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################################################################################
# PkgEval set-up: 2020-10-30T03:52:47.351
#
Julia Version 1.6.0-DEV.1380
Commit 300e34cf74 (2020-10-30 02:28 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-11.0.0 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_MAX_NUM_PRECOMPILE_FILES = 9223372036854775807
################################################################################
# Installation: 2020-10-30T03:52:49.501
#
Resolving package versions...
Installed VersionParsing ─────────────── v1.2.0
Installed CompilerSupportLibraries_jll ─ v0.3.4+0
Installed Conda ──────────────────────── v1.4.1
Installed Parsers ────────────────────── v1.0.11
Installed JSON ───────────────────────── v0.21.1
Installed MacroTools ─────────────────── v0.5.6
Installed JLLWrappers ────────────────── v1.1.3
Installed Devito ─────────────────────── v0.1.0
Installed Requires ───────────────────── v1.1.0
Installed TupleTools ─────────────────── v1.2.0
Installed MPICH_jll ──────────────────── v3.3.2+10
Installed MicrosoftMPI_jll ───────────── v10.1.2+3
Installed OpenMPI_jll ────────────────── v4.0.2+2
Installed PyCall ─────────────────────── v1.92.1
Installed DocStringExtensions ────────── v0.8.3
Installed MPI ────────────────────────── v0.15.1
Installed Strided ────────────────────── v1.1.1
Updating `~/.julia/environments/v1.6/Project.toml`
[06ed14b1] + Devito v0.1.0
Updating `~/.julia/environments/v1.6/Manifest.toml`
[8f4d0f93] + Conda v1.4.1
[06ed14b1] + Devito v0.1.0
[ffbed154] + DocStringExtensions v0.8.3
[692b3bcd] + JLLWrappers v1.1.3
[682c06a0] + JSON v0.21.1
[da04e1cc] + MPI v0.15.1
[1914dd2f] + MacroTools v0.5.6
[69de0a69] + Parsers v1.0.11
[438e738f] + PyCall v1.92.1
[ae029012] + Requires v1.1.0
[5e0ebb24] + Strided v1.1.1
[9d95972d] + TupleTools v1.2.0
[81def892] + VersionParsing v1.2.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.4+0
[7cb0a576] + MPICH_jll v3.3.2+10
[9237b28f] + MicrosoftMPI_jll v10.1.2+3
[fe0851c0] + OpenMPI_jll v4.0.2+2
[0dad84c5] + ArgTools
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[f43a241f] + Downloads
[b77e0a4c] + InteractiveUtils
[b27032c2] + LibCURL
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
[deac9b47] + LibCURL_jll
[14a3606d] + MozillaCACerts_jll
Building MPI ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0bd36605eea7a4d9c3ae0d7f21c10210dd54cb83/build.log`
Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/7a58bb32ce5d85f8bf7559aa7c2842f9aecf52fc/build.log`
Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b6dff5fa725eff4f775f472acd86756d6e31fb02/build.log`
Building Devito → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/3c2e4634f0f7dcbf9adb4d6cc3b3cdc52ac83cc1/build.log`
PkgEval failed: Error building `Devito`:
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
# All requested packages already installed.
Collecting git+https://github.com/devitocodes/devito.git
Cloning https://github.com/devitocodes/devito.git to /tmp/pip-req-build-3wmkicss
Requirement already satisfied: pip>=9.0.1 in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from devito==4.2.3+260.g32da18b81) (20.2.4)
Requirement already satisfied: numpy>1.16 in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from devito==4.2.3+260.g32da18b81) (1.19.2)
Collecting sympy<1.6
Downloading sympy-1.5.1-py2.py3-none-any.whl (5.6 MB)
Collecting scipy
Downloading scipy-1.5.3-cp38-cp38-manylinux1_x86_64.whl (25.8 MB)
Collecting pytest<7.0,>=3.6
Downloading pytest-6.1.2-py3-none-any.whl (272 kB)
Collecting pytest-runner
Downloading pytest_runner-5.2-py2.py3-none-any.whl (6.8 kB)
Collecting flake8>=2.1.0
Downloading flake8-3.8.4-py2.py3-none-any.whl (72 kB)
Collecting nbval
Downloading nbval-0.9.6-py2.py3-none-any.whl (23 kB)
Collecting cached-property
Downloading cached_property-1.5.2-py2.py3-none-any.whl (7.6 kB)
Collecting psutil>=5.1.0
Downloading psutil-5.7.3.tar.gz (465 kB)
Collecting py-cpuinfo
Downloading py-cpuinfo-7.0.0.tar.gz (95 kB)
Collecting cgen>=2020.1
Downloading cgen-2020.1.tar.gz (19 kB)
Collecting codepy>=2019.1
Downloading codepy-2019.1.tar.gz (24 kB)
Collecting click
Downloading click-7.1.2-py2.py3-none-any.whl (82 kB)
Collecting codecov
Downloading codecov-2.1.10-py2.py3-none-any.whl (16 kB)
Collecting pytest-cov
Downloading pytest_cov-2.10.1-py2.py3-none-any.whl (19 kB)
Collecting multidict
Downloading multidict-5.0.0-cp38-cp38-manylinux2014_x86_64.whl (159 kB)
Collecting anytree>=2.4.3
Downloading anytree-2.8.0-py2.py3-none-any.whl (41 kB)
Collecting pyrevolve>=2.1.3
Downloading pyrevolve-2.2.tar.gz (191 kB)
Collecting distributed<2.31
Downloading distributed-2.30.0-py3-none-any.whl (656 kB)
Collecting mpmath>=0.19
Downloading mpmath-1.1.0.tar.gz (512 kB)
Collecting toml
Downloading toml-0.10.1-py2.py3-none-any.whl (19 kB)
Collecting packaging
Downloading packaging-20.4-py2.py3-none-any.whl (37 kB)
Collecting iniconfig
Downloading iniconfig-1.1.1-py2.py3-none-any.whl (5.0 kB)
Collecting attrs>=17.4.0
Downloading attrs-20.2.0-py2.py3-none-any.whl (48 kB)
Collecting pluggy<1.0,>=0.12
Downloading pluggy-0.13.1-py2.py3-none-any.whl (18 kB)
Collecting py>=1.8.2
Downloading py-1.9.0-py2.py3-none-any.whl (99 kB)
Collecting mccabe<0.7.0,>=0.6.0
Downloading mccabe-0.6.1-py2.py3-none-any.whl (8.6 kB)
Collecting pycodestyle<2.7.0,>=2.6.0a1
Downloading pycodestyle-2.6.0-py2.py3-none-any.whl (41 kB)
Collecting pyflakes<2.3.0,>=2.2.0
Downloading pyflakes-2.2.0-py2.py3-none-any.whl (66 kB)
Collecting nbformat
Downloading nbformat-5.0.8-py3-none-any.whl (172 kB)
Collecting ipykernel
Downloading ipykernel-5.3.4-py3-none-any.whl (120 kB)
Collecting coverage
Downloading coverage-5.3-cp38-cp38-manylinux1_x86_64.whl (230 kB)
Collecting jupyter-client
Downloading jupyter_client-6.1.7-py3-none-any.whl (108 kB)
Requirement already satisfied: six in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from nbval->devito==4.2.3+260.g32da18b81) (1.15.0)
Collecting pytools>=2015.1.2
Downloading pytools-2020.4.3.tar.gz (62 kB)
Collecting appdirs>=1.4.0
Downloading appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
Requirement already satisfied: requests>=2.7.9 in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from codecov->devito==4.2.3+260.g32da18b81) (2.24.0)
Collecting contexttimer
Downloading contexttimer-0.3.3.tar.gz (4.9 kB)
Collecting dask>=2.9.0
Downloading dask-2.30.0-py3-none-any.whl (848 kB)
Collecting tblib>=1.6.0
Downloading tblib-1.7.0-py2.py3-none-any.whl (12 kB)
Collecting cloudpickle>=1.5.0
Downloading cloudpickle-1.6.0-py3-none-any.whl (23 kB)
Collecting tornado>=6.0.3; python_version >= "3.8"
Downloading tornado-6.0.4.tar.gz (496 kB)
Collecting toolz>=0.8.2
Downloading toolz-0.11.1-py3-none-any.whl (55 kB)
Collecting zict>=0.1.3
Downloading zict-2.0.0-py3-none-any.whl (10 kB)
Collecting msgpack>=0.6.0
Downloading msgpack-1.0.0-cp38-cp38-manylinux1_x86_64.whl (303 kB)
Collecting pyyaml
Downloading PyYAML-5.3.1.tar.gz (269 kB)
Collecting sortedcontainers!=2.0.0,!=2.0.1
Downloading sortedcontainers-2.2.2-py2.py3-none-any.whl (29 kB)
Requirement already satisfied: setuptools in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from distributed<2.31->devito==4.2.3+260.g32da18b81) (50.3.0.post20201006)
Collecting pyparsing>=2.0.2
Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB)
Collecting jsonschema!=2.5.0,>=2.4
Downloading jsonschema-3.2.0-py2.py3-none-any.whl (56 kB)
Collecting jupyter-core
Downloading jupyter_core-4.6.3-py2.py3-none-any.whl (83 kB)
Collecting traitlets>=4.1
Downloading traitlets-5.0.5-py3-none-any.whl (100 kB)
Collecting ipython-genutils
Downloading ipython_genutils-0.2.0-py2.py3-none-any.whl (26 kB)
Collecting ipython>=5.0.0
Downloading ipython-7.18.1-py3-none-any.whl (786 kB)
Collecting python-dateutil>=2.1
Downloading python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB)
Collecting pyzmq>=13
Downloading pyzmq-19.0.2-cp38-cp38-manylinux1_x86_64.whl (1.1 MB)
Collecting decorator>=3.2.0
Downloading decorator-4.4.2-py2.py3-none-any.whl (9.2 kB)
Requirement already satisfied: idna<3,>=2.5 in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from requests>=2.7.9->codecov->devito==4.2.3+260.g32da18b81) (2.10)
Requirement already satisfied: chardet<4,>=3.0.2 in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from requests>=2.7.9->codecov->devito==4.2.3+260.g32da18b81) (3.0.4)
Requirement already satisfied: certifi>=2017.4.17 in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from requests>=2.7.9->codecov->devito==4.2.3+260.g32da18b81) (2020.6.20)
Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from requests>=2.7.9->codecov->devito==4.2.3+260.g32da18b81) (1.25.11)
Collecting heapdict
Downloading HeapDict-1.0.1-py3-none-any.whl (3.9 kB)
Collecting pyrsistent>=0.14.0
Downloading pyrsistent-0.17.3.tar.gz (106 kB)
Collecting pickleshare
Downloading pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB)
Collecting prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0
Downloading prompt_toolkit-3.0.8-py3-none-any.whl (355 kB)
Collecting backcall
Downloading backcall-0.2.0-py2.py3-none-any.whl (11 kB)
Collecting pexpect>4.3; sys_platform != "win32"
Downloading pexpect-4.8.0-py2.py3-none-any.whl (59 kB)
Collecting jedi>=0.10
Downloading jedi-0.17.2-py2.py3-none-any.whl (1.4 MB)
Collecting pygments
Downloading Pygments-2.7.2-py3-none-any.whl (948 kB)
Collecting wcwidth
Downloading wcwidth-0.2.5-py2.py3-none-any.whl (30 kB)
Collecting ptyprocess>=0.5
Downloading ptyprocess-0.6.0-py2.py3-none-any.whl (39 kB)
Collecting parso<0.8.0,>=0.7.0
Downloading parso-0.7.1-py2.py3-none-any.whl (109 kB)
Building wheels for collected packages: devito, psutil, py-cpuinfo, cgen, codepy, pyrevolve, mpmath, pytools, contexttimer, tornado, pyyaml, pyrsistent
Building wheel for devito (setup.py): started
Building wheel for devito (setup.py): finished with status 'done'
Created wheel for devito: filename=devito-4.2.3+260.g32da18b81-py3-none-any.whl size=405935 sha256=f7e036f84e485ad3bf84ce7416ab16c83dec803be6b627d0664d382fa69ff45a
Stored in directory: /tmp/pip-ephem-wheel-cache-22dy4gah/wheels/18/38/2f/35f2aae0f3834b01341cd9272b43d4cf778e6f228808cf31b0
Building wheel for psutil (setup.py): started
Building wheel for psutil (setup.py): finished with status 'done'
Created wheel for psutil: filename=psutil-5.7.3-cp38-cp38-linux_x86_64.whl size=295108 sha256=21ed2e5dbead4ac768bc7a4f64effc2961177cb07942531c8a123791c0d20a51
Stored in directory: /home/pkgeval/.cache/pip/wheels/f6/59/c2/38111ef4c354088a156bc95fbeb5396c0cac91a0f62f7158b9
Building wheel for py-cpuinfo (setup.py): started
Building wheel for py-cpuinfo (setup.py): finished with status 'done'
Created wheel for py-cpuinfo: filename=py_cpuinfo-7.0.0-py3-none-any.whl size=20070 sha256=43fc0961e5f29eb38f403190a46df4936624b2c0cdbe520161ffa2658408d32e
Stored in directory: /home/pkgeval/.cache/pip/wheels/b4/99/9f/8eb77fdf759c1380719071722f2c37dd0fa1f6aa477c51cb6c
Building wheel for cgen (setup.py): started
Building wheel for cgen (setup.py): finished with status 'done'
Created wheel for cgen: filename=cgen-2020.1-py3-none-any.whl size=15822 sha256=6b8e799949b1fe74aceed38a8de19de4ae3942dd85065473bf1f0a74a8726250
Stored in directory: /home/pkgeval/.cache/pip/wheels/f1/7c/34/5ea06ad75758a23a959da1268dad81f7e1191b424fb4318dd2
Building wheel for codepy (setup.py): started
Building wheel for codepy (setup.py): finished with status 'done'
Created wheel for codepy: filename=codepy-2019.1-py3-none-any.whl size=19313 sha256=14c20346ebdaf9b6d4bed2d4a9178da6c40e51baacb73a504c59023250a9477a
Stored in directory: /home/pkgeval/.cache/pip/wheels/42/1f/3f/8c9d6eff98b2bacbf45771a1764eb26881c2d88c5d4e0ec75d
Building wheel for pyrevolve (setup.py): started
Building wheel for pyrevolve (setup.py): finished with status 'done'
Created wheel for pyrevolve: filename=pyrevolve-2.2-cp38-cp38-linux_x86_64.whl size=352333 sha256=2e1cabdeb692bde4c7ce6648718b3b3d0bec0f0911528cdc11fe6063237e7e09
Stored in directory: /home/pkgeval/.cache/pip/wheels/a6/f0/f9/a7cce2ae7bb69c398c146b9aaa38f3837abee3f63094297218
Building wheel for mpmath (setup.py): started
Building wheel for mpmath (setup.py): finished with status 'done'
Created wheel for mpmath: filename=mpmath-1.1.0-py3-none-any.whl size=532239 sha256=d0531996bccebbb9efc54f09ba3f96ac55312a5041e24cfd2b55dce257b157d8
Stored in directory: /home/pkgeval/.cache/pip/wheels/29/2c/1c/d2e4580cde2743b0aef389e936ac21a2db92921ddbca53faa1
Building wheel for pytools (setup.py): started
Building wheel for pytools (setup.py): finished with status 'done'
Created wheel for pytools: filename=pytools-2020.4.3-py2.py3-none-any.whl size=61374 sha256=ba159c329058ca47f8713abd093f5e66b107c43d6818819775d6a8a794dd25ea
Stored in directory: /home/pkgeval/.cache/pip/wheels/22/c7/47/a0973c96004cac56e61f9b13a55ebdb0a320e282156284db1b
Building wheel for contexttimer (setup.py): started
Building wheel for contexttimer (setup.py): finished with status 'done'
Created wheel for contexttimer: filename=contexttimer-0.3.3-py3-none-any.whl size=5816 sha256=328a52efcf568cc9daaf1ac71a672ef6f737543ad5f46c0274388c09174e8eb1
Stored in directory: /home/pkgeval/.cache/pip/wheels/70/dd/09/4924e45dc5912f71b971b6790958b5e82f88c9db95a7cb4969
Building wheel for tornado (setup.py): started
Building wheel for tornado (setup.py): finished with status 'done'
Created wheel for tornado: filename=tornado-6.0.4-cp38-cp38-linux_x86_64.whl size=428072 sha256=419e8c6188c4cf980b8c18c13df48d549e1e7095faf47793eb22e499825693a7
Stored in directory: /home/pkgeval/.cache/pip/wheels/88/79/e5/598ba17e85eccf2626eab62e4ee8452895636cd542650d450d
Building wheel for pyyaml (setup.py): started
Building wheel for pyyaml (setup.py): finished with status 'done'
Created wheel for pyyaml: filename=PyYAML-5.3.1-cp38-cp38-linux_x86_64.whl size=44619 sha256=0ab80b8d1a7a5714da95631a257a5f7e356cdabe254874c6592cda1ebd4b1070
Stored in directory: /home/pkgeval/.cache/pip/wheels/13/90/db/290ab3a34f2ef0b5a0f89235dc2d40fea83e77de84ed2dc05c
Building wheel for pyrsistent (setup.py): started
Building wheel for pyrsistent (setup.py): finished with status 'done'
Created wheel for pyrsistent: filename=pyrsistent-0.17.3-cp38-cp38-linux_x86_64.whl size=132290 sha256=c33618a60549980497c1a22364df7ddaa41a9276988f71a42b30efc613f9a188
Stored in directory: /home/pkgeval/.cache/pip/wheels/3d/22/08/7042eb6309c650c7b53615d5df5cc61f1ea9680e7edd3a08d2
Successfully built devito psutil py-cpuinfo cgen codepy pyrevolve mpmath pytools contexttimer tornado pyyaml pyrsistent
Installing collected packages: mpmath, sympy, scipy, toml, pyparsing, packaging, iniconfig, attrs, pluggy, py, pytest, pytest-runner, mccabe, pycodestyle, pyflakes, flake8, pyrsistent, jsonschema, ipython-genutils, traitlets, jupyter-core, nbformat, python-dateutil, pyzmq, tornado, jupyter-client, pickleshare, wcwidth, prompt-toolkit, decorator, backcall, ptyprocess, pexpect, parso, jedi, pygments, ipython, ipykernel, coverage, nbval, cached-property, psutil, py-cpuinfo, appdirs, pytools, cgen, codepy, click, codecov, pytest-cov, multidict, anytree, contexttimer, pyrevolve, pyyaml, dask, tblib, cloudpickle, toolz, heapdict, zict, msgpack, sortedcontainers, distributed, devito
Successfully installed anytree-2.8.0 appdirs-1.4.4 attrs-20.2.0 backcall-0.2.0 cached-property-1.5.2 cgen-2020.1 click-7.1.2 cloudpickle-1.6.0 codecov-2.1.10 codepy-2019.1 contexttimer-0.3.3 coverage-5.3 dask-2.30.0 decorator-4.4.2 devito-4.2.3+260.g32da18b81 distributed-2.30.0 flake8-3.8.4 heapdict-1.0.1 iniconfig-1.1.1 ipykernel-5.3.4 ipython-7.18.1 ipython-genutils-0.2.0 jedi-0.17.2 jsonschema-3.2.0 jupyter-client-6.1.7 jupyter-core-4.6.3 mccabe-0.6.1 mpmath-1.1.0 msgpack-1.0.0 multidict-5.0.0 nbformat-5.0.8 nbval-0.9.6 packaging-20.4 parso-0.7.1 pexpect-4.8.0 pickleshare-0.7.5 pluggy-0.13.1 prompt-toolkit-3.0.8 psutil-5.7.3 ptyprocess-0.6.0 py-1.9.0 py-cpuinfo-7.0.0 pycodestyle-2.6.0 pyflakes-2.2.0 pygments-2.7.2 pyparsing-2.4.7 pyrevolve-2.2 pyrsistent-0.17.3 pytest-6.1.2 pytest-cov-2.10.1 pytest-runner-5.2 python-dateutil-2.8.1 pytools-2020.4.3 pyyaml-5.3.1 pyzmq-19.0.2 scipy-1.5.3 sortedcontainers-2.2.2 sympy-1.5.1 tblib-1.7.0 toml-0.10.1 toolz-0.11.1 tornado-6.0.4 traitlets-5.0.5 wcwidth-0.2.5 zict-2.0.0
Collecting mpi4py
Downloading mpi4py-3.0.3.tar.gz (1.4 MB)
Building wheels for collected packages: mpi4py
Building wheel for mpi4py (setup.py): started
Building wheel for mpi4py (setup.py): finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /home/pkgeval/.julia/conda/3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-xfd0e6x8/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-xfd0e6x8/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-nxp93vni
cwd: /tmp/pip-install-xfd0e6x8/mpi4py/
Complete output (126 lines):
running bdist_wheel
running build
running build_src
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/bench.py -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/run.py -> build/lib.linux-x86_64-3.8/mpi4py
creating build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-3.8/mpi4py
creating build/lib.linux-x86_64-3.8/mpi4py/include
creating build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
running build_clib
MPI configuration: [mpi] from 'mpi.cfg'
checking for library 'lmpe' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -llmpe -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -llmpe
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'mpe' dylib library
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/src
creating build/temp.linux-x86_64-3.8/src/lib-pmpi
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/mpe.o
creating build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/mpe.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libmpe.so
checking for library 'vt-mpi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-mpi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt-mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.mpi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt.mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt' dylib library
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt.o
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt.so
checking for library 'vt-mpi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-mpi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt-mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.mpi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt.mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt-mpi' dylib library
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-mpi.o
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-mpi.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt-mpi.so
checking for library 'vt-hyb' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-hyb -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt-hyb
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.ompi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.ompi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt.ompi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt-hyb' dylib library
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-hyb.o
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-hyb.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt-hyb.so
running build_ext
MPI configuration: [mpi] from 'mpi.cfg'
checking for dlopen() availability ...
checking for header 'dlfcn.h' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pkgeval/.julia/conda/3/include/python3.8 -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
success!
checking for library 'dl' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pkgeval/.julia/conda/3/include/python3.8 -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'dlopen' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pkgeval/.julia/conda/3/include/python3.8 -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building 'mpi4py.dl' extension
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/home/pkgeval/.julia/conda/3/include/python3.8 -c src/dynload.c -o build/temp.linux-x86_64-3.8/src/dynload.o
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.8/src/dynload.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o build/lib.linux-x86_64-3.8/mpi4py/dl.cpython-38-x86_64-linux-gnu.so
checking for MPI compile and link ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pkgeval/.julia/conda/3/include/python3.8 -c _configtest.c -o _configtest.o
_configtest.c:2:10: fatal error: mpi.h: No such file or directory
2 | #include <mpi.h>
| ^~~~~~~
compilation terminated.
failure.
removing: _configtest.c _configtest.o
error: Cannot compile MPI programs. Check your configuration!!!
----------------------------------------
ERROR: Failed building wheel for mpi4py
Running setup.py clean for mpi4py
Failed to build mpi4py
Installing collected packages: mpi4py
Running setup.py install for mpi4py: started
Running setup.py install for mpi4py: finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /home/pkgeval/.julia/conda/3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-xfd0e6x8/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-xfd0e6x8/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-zuzt7pet/install-record.txt --single-version-externally-managed --compile --install-headers /home/pkgeval/.julia/conda/3/include/python3.8/mpi4py
cwd: /tmp/pip-install-xfd0e6x8/mpi4py/
Complete output (126 lines):
running install
running build
running build_src
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/bench.py -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/run.py -> build/lib.linux-x86_64-3.8/mpi4py
creating build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-3.8/mpi4py
creating build/lib.linux-x86_64-3.8/mpi4py/include
creating build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
running build_clib
MPI configuration: [mpi] from 'mpi.cfg'
checking for library 'lmpe' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -llmpe -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -llmpe
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'mpe' dylib library
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/src
creating build/temp.linux-x86_64-3.8/src/lib-pmpi
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/mpe.o
creating build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/mpe.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libmpe.so
checking for library 'vt-mpi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-mpi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt-mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.mpi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt.mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt' dylib library
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt.o
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt.so
checking for library 'vt-mpi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-mpi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt-mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.mpi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt.mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt-mpi' dylib library
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-mpi.o
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-mpi.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt-mpi.so
checking for library 'vt-hyb' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-hyb -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt-hyb
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.ompi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.ompi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt.ompi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt-hyb' dylib library
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-hyb.o
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-hyb.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt-hyb.so
running build_ext
MPI configuration: [mpi] from 'mpi.cfg'
checking for dlopen() availability ...
checking for header 'dlfcn.h' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pkgeval/.julia/conda/3/include/python3.8 -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
success!
checking for library 'dl' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pkgeval/.julia/conda/3/include/python3.8 -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'dlopen' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pkgeval/.julia/conda/3/include/python3.8 -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building 'mpi4py.dl' extension
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/home/pkgeval/.julia/conda/3/include/python3.8 -c src/dynload.c -o build/temp.linux-x86_64-3.8/src/dynload.o
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.8/src/dynload.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o build/lib.linux-x86_64-3.8/mpi4py/dl.cpython-38-x86_64-linux-gnu.so
checking for MPI compile and link ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pkgeval/.julia/conda/3/include/python3.8 -c _configtest.c -o _configtest.o
_configtest.c:2:10: fatal error: mpi.h: No such file or directory
2 | #include <mpi.h>
| ^~~~~~~
compilation terminated.
failure.
removing: _configtest.c _configtest.o
error: Cannot compile MPI programs. Check your configuration!!!
----------------------------------------
ERROR: Command errored out with exit status 1: /home/pkgeval/.julia/conda/3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-xfd0e6x8/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-xfd0e6x8/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-zuzt7pet/install-record.txt --single-version-externally-managed --compile --install-headers /home/pkgeval/.julia/conda/3/include/python3.8/mpi4py Check the logs for full command output.
[ Info: Running `conda install -q -y pip` in root environment
ERROR: LoadError: failed process: Process(`/home/pkgeval/.julia/conda/3/bin/pip install mpi4py`, ProcessExited(1)) [1]
Stacktrace:
[1] pipeline_error
@ ./process.jl:525 [inlined]
[2] run(::Cmd; wait::Bool)
@ Base ./process.jl:440
[3] run(::Cmd)
@ Base ./process.jl:438
[4] top-level scope
@ ~/.julia/packages/Devito/20atZ/deps/build.jl:6
[5] include(fname::String)
@ Base.MainInclude ./client.jl:444
[6] top-level scope
@ none:5
in expression starting at /home/pkgeval/.julia/packages/Devito/20atZ/deps/build.jl:6
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] (::Pkg.Operations.var"#77#82"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec})()
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1016
[3] withenv(::Pkg.Operations.var"#77#82"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, ::Pair{String, String}, ::Vararg{Pair{String, B} where B, N} where N)
@ Base ./env.jl:161
[4] (::Pkg.Operations.var"#104#108"{String, Pkg.Operations.var"#77#82"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec})()
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1506
[5] with_temp_env(fn::Pkg.Operations.var"#104#108"{String, Pkg.Operations.var"#77#82"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec}, temp_env::String)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1420
[6] (::Pkg.Operations.var"#103#107"{Pkg.Operations.var"#77#82"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String})(tmp::String)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1491
[7] mktempdir(fn::Pkg.Operations.var"#103#107"{Pkg.Operations.var"#77#82"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String}, parent::String; prefix::String)
@ Base.Filesystem ./file.jl:711
[8] mktempdir(fn::Function, parent::String)
@ Base.Filesystem ./file.jl:709
[9] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Pkg.Types.Project)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1458
[10] build_versions(ctx::Pkg.Types.Context, uuids::Vector{Base.UUID}; verbose::Bool)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:997
[11] build_versions
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:926 [inlined]
[12] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Vector{Base.UUID}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1217
[13] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:195
[14] add
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:146 [inlined]
[15] add(pkgs::Vector{Pkg.Types.PackageSpec}; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:71
[16] add
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:70 [inlined]
[17] #add#21
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[18] add
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[19] #add#20
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[20] add(pkg::String)
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67
[21] top-level scope
@ none:39
[22] eval
@ ./boot.jl:360 [inlined]
[23] eval(x::Expr)
@ Base.MainInclude ./client.jl:446
[24] top-level scope
@ none:1
[25] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[26] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[27] _start()
@ Base ./client.jl:485
################################################################################
# PkgEval teardown: 2020-10-30T03:55:18.914
CPU usage: 141.58s (124.86s user, 16.82s kernel)
Network usage:
- eth0: 480.117 MiB received, 1.430 MiB sent
Raw statistics: {"blkio_stats":{"io_queue_recursive":[],"io_serviced_recursive":[{"major":259,"value":0,"op":"Read","minor":0},{"major":259,"value":206,"op":"Write","minor":0},{"major":259,"value":16,"op":"Sync","minor":0},{"major":259,"value":190,"op":"Async","minor":0},{"major":259,"value":206,"op":"Total","minor":0},{"major":253,"value":0,"op":"Read","minor":2},{"major":253,"value":206,"op":"Write","minor":2},{"major":253,"value":16,"op":"Sync","minor":2},{"major":253,"value":190,"op":"Async","minor":2},{"major":253,"value":206,"op":"Total","minor":2}],"io_time_recursive":[],"sectors_recursive":[],"io_service_bytes_recursive":[{"major":259,"value":0,"op":"Read","minor":0},{"major":259,"value":9531392,"op":"Write","minor":0},{"major":259,"value":1867776,"op":"Sync","minor":0},{"major":259,"value":7663616,"op":"Async","minor":0},{"major":259,"value":9531392,"op":"Total","minor":0},{"major":253,"value":0,"op":"Read","minor":2},{"major":253,"value":38182912,"op":"Write","minor":2},{"major":253,"value":14196736,"op":"Sync","minor":2},{"major":253,"value":23986176,"op":"Async","minor":2},{"major":253,"value":38182912,"op":"Total","minor":2}],"io_wait_time_recursive":[],"io_merged_recursive":[],"io_service_time_recursive":[]},"memory_stats":{"usage":2120515584,"max_usage":2770411520,"stats":{"hierarchical_memory_limit":9223372036854771712,"pgmajfault":0,"total_rss":207261696,"inactive_file":8192,"inactive_anon":1327173632,"total_pgfault":2666043,"total_cache":1863213056,"total_rss_huge":0,"total_active_anon":743280640,"total_pgmajfault":0,"pgpgin":2590471,"rss_huge":0,"mapped_file":0,"total_inactive_file":8192,"dirty":0,"total_unevictable":0,"total_dirty":0,"writeback":0,"pgpgout":2084984,"hierarchical_memsw_limit":0,"cache":1863213056,"active_file":12288,"pgfault":2666043,"total_mapped_file":0,"total_pgpgout":2084984,"total_writeback":0,"rss":207261696,"unevictable":0,"total_inactive_anon":1327173632,"total_pgpgin":2590471,"active_anon":743280640,"total_active_file":12288},"limit":540972998656},"name":"/Devito-1DYdcPK0","networks":{"eth0":{"rx_bytes":503439293,"rx_packets":39577,"tx_packets":23474,"tx_bytes":1499372,"tx_dropped":0,"rx_dropped":5,"tx_errors":0,"rx_errors":0}},"id":"8c5dab5300512cc92f3a51208c66513c18909dcd75782d1d3ba7fc92ada70741","preread":"0001-01-01T00:00:00Z","storage_stats":{},"precpu_stats":{"throttling_data":{"throttled_periods":0,"throttled_time":0,"periods":0},"cpu_usage":{"usage_in_usermode":0,"usage_in_kernelmode":0,"total_usage":0}},"pids_stats":{"current":38},"num_procs":0,"cpu_stats":{"throttling_data":{"throttled_periods":0,"throttled_time":0,"periods":0},"system_cpu_usage":112605008570000000,"online_cpus":128,"cpu_usage":{"usage_in_usermode":124860000000,"usage_in_kernelmode":16820000000,"total_usage":141578457272,"percpu_usage":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3084932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,141575372340,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]}},"read":"2020-10-30T03:55:19.71994013Z"}