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1.6.0-DEV-a23a4ff08d.log
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Julia Version 1.6.0-DEV.430
Commit a23a4ff08d (2020-07-11 14:53 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed LeftChildRightSiblingTrees ─── v0.1.2
Installed FunctionWrappers ───────────── v1.1.1
Installed SimpleTraits ───────────────── v0.9.2
Installed CommonSubexpressions ───────── v0.3.0
Installed MacroTools ─────────────────── v0.5.5
Installed AbstractTrees ──────────────── v0.3.3
Installed CEnum ──────────────────────── v0.4.1
Installed RecursiveArrayTools ────────── v2.5.0
Installed NLsolve ────────────────────── v4.4.0
Installed SLEEFPirates ───────────────── v0.5.4
Installed TableTraits ────────────────── v1.0.0
Installed NLSolversBase ──────────────── v7.6.1
Installed VectorizationBase ──────────── v0.12.21
Installed NetworkDynamics ────────────── v0.3.1
Installed DataStructures ─────────────── v0.17.19
Installed StaticArrays ───────────────── v0.12.4
Installed DiffEqBase ─────────────────── v6.40.4
Installed LightGraphs ────────────────── v1.3.3
Installed DiffResults ────────────────── v1.0.2
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed FiniteDiff ─────────────────── v2.4.1
Installed DocStringExtensions ────────── v0.8.2
Installed ArnoldiMethod ──────────────── v0.0.4
Installed LoggingExtras ──────────────── v0.4.1
Installed NaNMath ────────────────────── v0.3.3
Installed RecursiveFactorization ─────── v0.1.4
Installed MuladdMacro ────────────────── v0.2.2
Installed ArrayInterface ─────────────── v2.9.1
Installed Roots ──────────────────────── v1.0.3
Installed Requires ───────────────────── v1.0.1
Installed Inflate ────────────────────── v0.1.2
Installed OrderedCollections ─────────── v1.3.0
Installed TreeViews ──────────────────── v0.3.0
Installed Parameters ─────────────────── v0.12.1
Installed ProgressMeter ──────────────── v1.3.1
Installed DiffRules ──────────────────── v1.0.1
Installed ProgressLogging ────────────── v0.1.3
Installed IteratorInterfaceExtensions ── v1.0.0
Installed Reexport ───────────────────── v0.2.0
Installed ZygoteRules ────────────────── v0.2.0
Installed UnPack ─────────────────────── v1.0.1
Installed ConsoleProgressMonitor ─────── v0.1.2
Installed SpecialFunctions ───────────── v0.10.3
Installed TerminalLoggers ────────────── v0.1.2
Installed LoopVectorization ──────────── v0.8.15
Installed IterativeSolvers ───────────── v0.8.4
Installed CpuId ──────────────────────── v0.2.2
Installed LineSearches ───────────────── v7.0.1
Installed RecipesBase ────────────────── v1.0.1
Installed OffsetArrays ───────────────── v1.1.1
Installed SIMDPirates ────────────────── v0.8.13
Installed ForwardDiff ────────────────── v0.10.12
Installed ChainRulesCore ─────────────── v0.9.3
Installed LLVM ───────────────────────── v2.0.0
Installed LabelledArrays ─────────────── v1.3.0
Installed Distances ──────────────────── v0.9.0
Updating `~/.julia/environments/v1.6/Project.toml`
[22e9dc34] + NetworkDynamics v0.3.1
Updating `~/.julia/environments/v1.6/Manifest.toml`
[1520ce14] + AbstractTrees v0.3.3
[ec485272] + ArnoldiMethod v0.0.4
[4fba245c] + ArrayInterface v2.9.1
[fa961155] + CEnum v0.4.1
[d360d2e6] + ChainRulesCore v0.9.3
[bbf7d656] + CommonSubexpressions v0.3.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[88cd18e8] + ConsoleProgressMonitor v0.1.2
[adafc99b] + CpuId v0.2.2
[864edb3b] + DataStructures v0.17.19
[2b5f629d] + DiffEqBase v6.40.4
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[b4f34e82] + Distances v0.9.0
[ffbed154] + DocStringExtensions v0.8.2
[6a86dc24] + FiniteDiff v2.4.1
[f6369f11] + ForwardDiff v0.10.12
[069b7b12] + FunctionWrappers v1.1.1
[d25df0c9] + Inflate v0.1.2
[42fd0dbc] + IterativeSolvers v0.8.4
[82899510] + IteratorInterfaceExtensions v1.0.0
[929cbde3] + LLVM v2.0.0
[2ee39098] + LabelledArrays v1.3.0
[1d6d02ad] + LeftChildRightSiblingTrees v0.1.2
[093fc24a] + LightGraphs v1.3.3
[d3d80556] + LineSearches v7.0.1
[e6f89c97] + LoggingExtras v0.4.1
[bdcacae8] + LoopVectorization v0.8.15
[1914dd2f] + MacroTools v0.5.5
[46d2c3a1] + MuladdMacro v0.2.2
[d41bc354] + NLSolversBase v7.6.1
[2774e3e8] + NLsolve v4.4.0
[77ba4419] + NaNMath v0.3.3
[22e9dc34] + NetworkDynamics v0.3.1
[6fe1bfb0] + OffsetArrays v1.1.1
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.3.0
[d96e819e] + Parameters v0.12.1
[33c8b6b6] + ProgressLogging v0.1.3
[92933f4c] + ProgressMeter v1.3.1
[3cdcf5f2] + RecipesBase v1.0.1
[731186ca] + RecursiveArrayTools v2.5.0
[f2c3362d] + RecursiveFactorization v0.1.4
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[f2b01f46] + Roots v1.0.3
[21efa798] + SIMDPirates v0.8.13
[476501e8] + SLEEFPirates v0.5.4
[699a6c99] + SimpleTraits v0.9.2
[276daf66] + SpecialFunctions v0.10.3
[90137ffa] + StaticArrays v0.12.4
[3783bdb8] + TableTraits v1.0.0
[5d786b92] + TerminalLoggers v0.1.2
[a2a6695c] + TreeViews v0.3.0
[3a884ed6] + UnPack v1.0.1
[3d5dd08c] + VectorizationBase v0.12.21
[700de1a5] + ZygoteRules v0.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building SLEEFPirates → `~/.julia/packages/SLEEFPirates/QzifL/deps/build.log`
Testing NetworkDynamics
Status `/tmp/jl_w4Opzj/Project.toml`
[2b5f629d] DiffEqBase v6.40.4
[093fc24a] LightGraphs v1.3.3
[22e9dc34] NetworkDynamics v0.3.1
[1dea7af3] OrdinaryDiffEq v5.41.0
[37e2e46d] LinearAlgebra
[2f01184e] SparseArrays
[8dfed614] Test
Status `/tmp/jl_w4Opzj/Manifest.toml`
[1520ce14] AbstractTrees v0.3.3
[79e6a3ab] Adapt v2.0.2
[ec485272] ArnoldiMethod v0.0.4
[4fba245c] ArrayInterface v2.9.1
[fa961155] CEnum v0.4.1
[d360d2e6] ChainRulesCore v0.9.3
[bbf7d656] CommonSubexpressions v0.3.0
[34da2185] Compat v3.13.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[88cd18e8] ConsoleProgressMonitor v0.1.2
[adafc99b] CpuId v0.2.2
[864edb3b] DataStructures v0.17.19
[2b5f629d] DiffEqBase v6.40.4
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[b4f34e82] Distances v0.9.0
[ffbed154] DocStringExtensions v0.8.2
[d4d017d3] ExponentialUtilities v1.7.0
[6a86dc24] FiniteDiff v2.4.1
[f6369f11] ForwardDiff v0.10.12
[069b7b12] FunctionWrappers v1.1.1
[01680d73] GenericSVD v0.3.0
[d25df0c9] Inflate v0.1.2
[42fd0dbc] IterativeSolvers v0.8.4
[82899510] IteratorInterfaceExtensions v1.0.0
[929cbde3] LLVM v2.0.0
[2ee39098] LabelledArrays v1.3.0
[1d6d02ad] LeftChildRightSiblingTrees v0.1.2
[093fc24a] LightGraphs v1.3.3
[d3d80556] LineSearches v7.0.1
[e6f89c97] LoggingExtras v0.4.1
[bdcacae8] LoopVectorization v0.8.15
[1914dd2f] MacroTools v0.5.5
[46d2c3a1] MuladdMacro v0.2.2
[d41bc354] NLSolversBase v7.6.1
[2774e3e8] NLsolve v4.4.0
[77ba4419] NaNMath v0.3.3
[22e9dc34] NetworkDynamics v0.3.1
[6fe1bfb0] OffsetArrays v1.1.1
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.3.0
[1dea7af3] OrdinaryDiffEq v5.41.0
[d96e819e] Parameters v0.12.1
[33c8b6b6] ProgressLogging v0.1.3
[92933f4c] ProgressMeter v1.3.1
[3cdcf5f2] RecipesBase v1.0.1
[731186ca] RecursiveArrayTools v2.5.0
[f2c3362d] RecursiveFactorization v0.1.4
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[f2b01f46] Roots v1.0.3
[21efa798] SIMDPirates v0.8.13
[476501e8] SLEEFPirates v0.5.4
[699a6c99] SimpleTraits v0.9.2
[47a9eef4] SparseDiffTools v1.9.1
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[3783bdb8] TableTraits v1.0.0
[5d786b92] TerminalLoggers v0.1.2
[a2a6695c] TreeViews v0.3.0
[3a884ed6] UnPack v1.0.1
[3d5dd08c] VectorizationBase v0.12.21
[19fa3120] VertexSafeGraphs v0.1.2
[700de1a5] ZygoteRules v0.2.0
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
--- Diffusion dynamics ---
Building with simple API
Building Static Network Dynamics
Test Summary: | Pass Total
Network dynamics static accuracy | 60 60
Building Static Network Dynamics with artifical ODE Edges
Maximum difference to analytic solution with explicit Laplacian: 0.00012774179624457788
Maximum difference to analytic solution with static ND: 0.00012774179577841605
Maximum difference to analytic solution with fake ode edge ND: 6.720940131890729e-6
--- Network dynamics with a static vertex ---
Building Static Network Dynamics with one static vertex
These dynamics should flow to π, at t=500. they are there up to 1.5016876631079867e-11
--- Function Typology ---
Testing NetworkDynamics tests passed