diff --git a/docs/_posts/mauro-nievoff/2022-12-01-oncology_biomarker_pipeline_en.md b/docs/_posts/mauro-nievoff/2022-12-01-oncology_biomarker_pipeline_en.md new file mode 100644 index 00000000000000..aa69e3272d1019 --- /dev/null +++ b/docs/_posts/mauro-nievoff/2022-12-01-oncology_biomarker_pipeline_en.md @@ -0,0 +1,214 @@ +--- +layout: model +title: Oncology Pipeline for Biomarkers +author: John Snow Labs +name: oncology_biomarker_pipeline +date: 2022-12-01 +tags: [licensed, pipeline, oncology, biomarker, en] +task: Named Entity Recognition +language: en +edition: Healthcare NLP 4.2.2 +spark_version: 3.0 +supported: true +article_header: + type: cover +use_language_switcher: "Python-Scala-Java" +--- + +## Description + +This pipeline includes Named-Entity Recognition, Assertion Status and Relation Extraction models to extract information from oncology texts. This pipeline focuses on entities related to biomarkers. + +{:.btn-box} + +[Open in Colab](https://colab.research.google.com/github/JohnSnowLabs/spark-nlp-workshop/blob/master/tutorials/Certification_Trainings/Healthcare/27.Oncology_Model.ipynb){:.button.button-orange.button-orange-trans.co.button-icon} +[Download](https://s3.amazonaws.com/auxdata.johnsnowlabs.com/clinical/models/oncology_biomarker_pipeline_en_4.2.2_3.0_1669902355525.zip){:.button.button-orange.button-orange-trans.arr.button-icon} + +## How to use + + + +
+{% include programmingLanguageSelectScalaPythonNLU.html %} +```python +from sparknlp.pretrained import PretrainedPipeline + +pipeline = PretrainedPipeline("oncology_biomarker_pipeline", "en", "clinical/models") + +pipeline.annotate("Immunohistochemistry was negative for thyroid transcription factor-1 and napsin A. The test was positive for ER and PR, and negative for HER2.") +``` +```scala +import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline + +val pipeline = new PretrainedPipeline("oncology_biomarker_pipeline", "en", "clinical/models") + +val result = pipeline.fullAnnotate("""Immunohistochemistry was negative for thyroid transcription factor-1 and napsin A. The test was positive for ER and PR, and negative for HER2.""")(0) +``` +
+ +## Results + +```bash +******************** ner_oncology_wip results ******************** + +| chunk | ner_label | +|:-------------------------------|:-----------------| +| negative | Biomarker_Result | +| thyroid transcription factor-1 | Biomarker | +| napsin | Biomarker | +| positive | Biomarker_Result | +| ER | Biomarker | +| PR | Biomarker | +| negative | Biomarker_Result | +| HER2 | Oncogene | + + +******************** ner_oncology_biomarker_wip results ******************** + +| chunk | ner_label | +|:-------------------------------|:-----------------| +| negative | Biomarker_Result | +| thyroid transcription factor-1 | Biomarker | +| napsin A | Biomarker | +| positive | Biomarker_Result | +| ER | Biomarker | +| PR | Biomarker | +| negative | Biomarker_Result | +| HER2 | Biomarker | + + +******************** ner_oncology_test_wip results ******************** + +| chunk | ner_label | +|:-------------------------------|:-----------------| +| Immunohistochemistry | Pathology_Test | +| negative | Biomarker_Result | +| thyroid transcription factor-1 | Biomarker | +| napsin A | Biomarker | +| positive | Biomarker_Result | +| ER | Biomarker | +| PR | Biomarker | +| negative | Biomarker_Result | +| HER2 | Oncogene | + + +******************** ner_biomarker results ******************** + +| chunk | ner_label | +|:-------------------------------|:----------------------| +| Immunohistochemistry | Test | +| negative | Biomarker_Measurement | +| thyroid transcription factor-1 | Biomarker | +| napsin A | Biomarker | +| positive | Biomarker_Measurement | +| ER | Biomarker | +| PR | Biomarker | +| negative | Biomarker_Measurement | +| HER2 | Biomarker | + + +******************** assertion_oncology_wip results ******************** + +| chunk | ner_label | assertion | +|:-------------------------------|:---------------|:------------| +| Immunohistochemistry | Pathology_Test | Past | +| thyroid transcription factor-1 | Biomarker | Present | +| napsin A | Biomarker | Present | +| ER | Biomarker | Present | +| PR | Biomarker | Present | +| HER2 | Oncogene | Present | + + +******************** assertion_oncology_test_binary_wip results ******************** + +| chunk | ner_label | assertion | +|:-------------------------------|:---------------|:----------------| +| Immunohistochemistry | Pathology_Test | Medical_History | +| thyroid transcription factor-1 | Biomarker | Medical_History | +| napsin A | Biomarker | Medical_History | +| ER | Biomarker | Medical_History | +| PR | Biomarker | Medical_History | +| HER2 | Oncogene | Medical_History | + + +******************** re_oncology_wip results ******************** + +| chunk1 | entity1 | chunk2 | entity2 | relation | +|:---------------------|:-----------------|:-------------------------------|:-----------------|:--------------| +| Immunohistochemistry | Pathology_Test | negative | Biomarker_Result | O | +| negative | Biomarker_Result | thyroid transcription factor-1 | Biomarker | is_related_to | +| negative | Biomarker_Result | napsin A | Biomarker | is_related_to | +| positive | Biomarker_Result | ER | Biomarker | is_related_to | +| positive | Biomarker_Result | PR | Biomarker | is_related_to | +| positive | Biomarker_Result | HER2 | Oncogene | O | +| ER | Biomarker | negative | Biomarker_Result | O | +| PR | Biomarker | negative | Biomarker_Result | O | +| negative | Biomarker_Result | HER2 | Oncogene | is_related_to | + + +******************** re_oncology_granular_wip results ******************** + +| chunk1 | entity1 | chunk2 | entity2 | relation | +|:---------------------|:-----------------|:-------------------------------|:-----------------|:--------------| +| Immunohistochemistry | Pathology_Test | negative | Biomarker_Result | O | +| negative | Biomarker_Result | thyroid transcription factor-1 | Biomarker | is_finding_of | +| negative | Biomarker_Result | napsin A | Biomarker | is_finding_of | +| positive | Biomarker_Result | ER | Biomarker | is_finding_of | +| positive | Biomarker_Result | PR | Biomarker | is_finding_of | +| positive | Biomarker_Result | HER2 | Oncogene | is_finding_of | +| ER | Biomarker | negative | Biomarker_Result | O | +| PR | Biomarker | negative | Biomarker_Result | O | +| negative | Biomarker_Result | HER2 | Oncogene | is_finding_of | + + +******************** re_oncology_biomarker_result_wip results ******************** + +| chunk1 | entity1 | chunk2 | entity2 | relation | +|:---------------------|:-----------------|:-------------------------------|:-----------------|:--------------| +| Immunohistochemistry | Pathology_Test | negative | Biomarker_Result | is_finding_of | +| negative | Biomarker_Result | thyroid transcription factor-1 | Biomarker | is_finding_of | +| negative | Biomarker_Result | napsin A | Biomarker | is_finding_of | +| positive | Biomarker_Result | ER | Biomarker | is_finding_of | +| positive | Biomarker_Result | PR | Biomarker | is_finding_of | +| positive | Biomarker_Result | HER2 | Oncogene | O | +| ER | Biomarker | negative | Biomarker_Result | O | +| PR | Biomarker | negative | Biomarker_Result | O | +| negative | Biomarker_Result | HER2 | Oncogene | is_finding_of | +``` + +{:.model-param} +## Model Information + +{:.table-model} +|---|---| +|Model Name:|oncology_biomarker_pipeline| +|Type:|pipeline| +|Compatibility:|Healthcare NLP 4.2.2+| +|License:|Licensed| +|Edition:|Official| +|Language:|en| +|Size:|1.7 GB| + +## Included Models + +- DocumentAssembler +- SentenceDetectorDLModel +- TokenizerModel +- WordEmbeddingsModel +- MedicalNerModel +- NerConverter +- MedicalNerModel +- NerConverter +- MedicalNerModel +- NerConverter +- MedicalNerModel +- NerConverter +- ChunkMergeModel +- ChunkMergeModel +- AssertionDLModel +- AssertionDLModel +- PerceptronModel +- DependencyParserModel +- RelationExtractionModel +- RelationExtractionModel +- RelationExtractionModel \ No newline at end of file diff --git a/docs/_posts/mauro-nievoff/2022-12-01-oncology_diagnosis_pipeline_en.md b/docs/_posts/mauro-nievoff/2022-12-01-oncology_diagnosis_pipeline_en.md new file mode 100644 index 00000000000000..81972391c2553d --- /dev/null +++ b/docs/_posts/mauro-nievoff/2022-12-01-oncology_diagnosis_pipeline_en.md @@ -0,0 +1,190 @@ +--- +layout: model +title: Oncology Pipeline for Diagnosis Entities +author: John Snow Labs +name: oncology_diagnosis_pipeline +date: 2022-12-01 +tags: [licensed, pipeline, oncology, en] +task: Named Entity Recognition +language: en +edition: Healthcare NLP 4.2.2 +spark_version: 3.0 +supported: true +article_header: + type: cover +use_language_switcher: "Python-Scala-Java" +--- + +## Description + +This pipeline includes Named-Entity Recognition, Assertion Status, Relation Extraction and Entity Resolution models to extract information from oncology texts. This pipeline focuses on entities related to oncological diagnosis. + +{:.btn-box} + +[Open in Colab](https://colab.research.google.com/github/JohnSnowLabs/spark-nlp-workshop/blob/master/tutorials/Certification_Trainings/Healthcare/27.Oncology_Model.ipynb){:.button.button-orange.button-orange-trans.co.button-icon} +[Download](https://s3.amazonaws.com/auxdata.johnsnowlabs.com/clinical/models/oncology_diagnosis_pipeline_en_4.2.2_3.0_1669901190921.zip){:.button.button-orange.button-orange-trans.arr.button-icon} + +## How to use + + + +
+{% include programmingLanguageSelectScalaPythonNLU.html %} +```python +from sparknlp.pretrained import PretrainedPipeline + +pipeline = PretrainedPipeline("oncology_diagnosis_pipeline", "en", "clinical/models") + +pipeline.fullAnnotate("Two years ago, the patient presented with a 4-cm tumor in her left breast. She was diagnosed with ductal carcinoma. +According to her last CT, she has no lung metastases.")[0] + +``` +```scala +import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline + +val pipeline = new PretrainedPipeline("oncology_diagnosis_pipeline", "en", "clinical/models") + +val result = pipeline.fullAnnotate("""Two years ago, the patient presented with a 4-cm tumor in her left breast. She was diagnosed with ductal carcinoma. +According to her last CT, she has no lung metastases.""")(0) +``` +
+ +## Results + +```bash +******************** ner_oncology_wip results ******************** + +| chunk | ner_label | +|:-----------|:------------------| +| 4-cm | Tumor_Size | +| tumor | Tumor_Finding | +| left | Direction | +| breast | Site_Breast | +| ductal | Histological_Type | +| carcinoma | Cancer_Dx | +| lung | Site_Lung | +| metastases | Metastasis | + + +******************** ner_oncology_diagnosis_wip results ******************** + +| chunk | ner_label | +|:-----------|:------------------| +| 4-cm | Tumor_Size | +| tumor | Tumor_Finding | +| ductal | Histological_Type | +| carcinoma | Cancer_Dx | +| metastases | Metastasis | + + +******************** ner_oncology_tnm_wip results ******************** + +| chunk | ner_label | +|:-----------|:------------------| +| 4-cm | Tumor_Description | +| tumor | Tumor | +| ductal | Tumor_Description | +| carcinoma | Cancer_Dx | +| metastases | Metastasis | + + +******************** assertion_oncology_wip results ******************** + +| chunk | ner_label | assertion | +|:-----------|:------------------|:------------| +| tumor | Tumor_Finding | Present | +| ductal | Histological_Type | Present | +| carcinoma | Cancer_Dx | Present | +| metastases | Metastasis | Absent | + + +******************** assertion_oncology_problem_wip results ******************** + +| chunk | ner_label | assertion | +|:-----------|:------------------|:-----------------------| +| tumor | Tumor_Finding | Medical_History | +| ductal | Histological_Type | Medical_History | +| carcinoma | Cancer_Dx | Medical_History | +| metastases | Metastasis | Hypothetical_Or_Absent | + + +******************** re_oncology_wip results ******************** + +| chunk1 | entity1 | chunk2 | entity2 | relation | +|:---------|:--------------|:-----------|:--------------|:--------------| +| 4-cm | Tumor_Size | tumor | Tumor_Finding | is_related_to | +| 4-cm | Tumor_Size | carcinoma | Cancer_Dx | O | +| tumor | Tumor_Finding | breast | Site_Breast | is_related_to | +| breast | Site_Breast | carcinoma | Cancer_Dx | O | +| lung | Site_Lung | metastases | Metastasis | is_related_to | + + +******************** re_oncology_granular_wip results ******************** + +| chunk1 | entity1 | chunk2 | entity2 | relation | +|:---------|:--------------|:-----------|:--------------|:---------------| +| 4-cm | Tumor_Size | tumor | Tumor_Finding | is_size_of | +| 4-cm | Tumor_Size | carcinoma | Cancer_Dx | O | +| tumor | Tumor_Finding | breast | Site_Breast | is_location_of | +| breast | Site_Breast | carcinoma | Cancer_Dx | O | +| lung | Site_Lung | metastases | Metastasis | is_location_of | + + +******************** re_oncology_size_wip results ******************** + +| chunk1 | entity1 | chunk2 | entity2 | relation | +|:---------|:-----------|:----------|:--------------|:-----------| +| 4-cm | Tumor_Size | tumor | Tumor_Finding | is_size_of | +| 4-cm | Tumor_Size | carcinoma | Cancer_Dx | O | + + +******************** ICD-O resolver results ******************** + +| chunk | ner_label | code | normalized_term | +|:-----------|:------------------|:-------|:------------------| +| tumor | Tumor_Finding | 8000/1 | tumor | +| breast | Site_Breast | C50 | breast | +| ductal | Histological_Type | 8500/2 | dcis | +| carcinoma | Cancer_Dx | 8010/3 | carcinoma | +| lung | Site_Lung | C34.9 | lung | +| metastases | Metastasis | 8000/6 | tumor, metastatic | +``` + +{:.model-param} +## Model Information + +{:.table-model} +|---|---| +|Model Name:|oncology_diagnosis_pipeline| +|Type:|pipeline| +|Compatibility:|Healthcare NLP 4.2.2+| +|License:|Licensed| +|Edition:|Official| +|Language:|en| +|Size:|2.3 GB| + +## Included Models + +- DocumentAssembler +- SentenceDetectorDLModel +- TokenizerModel +- WordEmbeddingsModel +- MedicalNerModel +- NerConverter +- MedicalNerModel +- NerConverter +- MedicalNerModel +- NerConverter +- ChunkMergeModel +- ChunkMergeModel +- AssertionDLModel +- AssertionDLModel +- PerceptronModel +- DependencyParserModel +- RelationExtractionModel +- RelationExtractionModel +- RelationExtractionModel +- ChunkMergeModel +- Chunk2Doc +- BertSentenceEmbeddings +- SentenceEntityResolverModel \ No newline at end of file diff --git a/docs/_posts/mauro-nievoff/2022-12-01-oncology_general_pipeline_en.md b/docs/_posts/mauro-nievoff/2022-12-01-oncology_general_pipeline_en.md new file mode 100644 index 00000000000000..6d0265813e8195 --- /dev/null +++ b/docs/_posts/mauro-nievoff/2022-12-01-oncology_general_pipeline_en.md @@ -0,0 +1,172 @@ +--- +layout: model +title: General Oncology Pipeline +author: John Snow Labs +name: oncology_general_pipeline +date: 2022-12-01 +tags: [licensed, pipeline, oncology, en] +task: Named Entity Recognition +language: en +edition: Healthcare NLP 4.2.2 +spark_version: 3.0 +supported: true +article_header: + type: cover +use_language_switcher: "Python-Scala-Java" +--- + +## Description + +This pipeline includes Named-Entity Recognition, Assertion Status and Relation Extraction models to extract information from oncology texts. This pipeline extracts diagnoses, treatments, tests, anatomical references and demographic entities. + +{:.btn-box} + +[Open in Colab](https://colab.research.google.com/github/JohnSnowLabs/spark-nlp-workshop/blob/master/tutorials/Certification_Trainings/Healthcare/27.Oncology_Model.ipynb){:.button.button-orange.button-orange-trans.co.button-icon} +[Download](https://s3.amazonaws.com/auxdata.johnsnowlabs.com/clinical/models/oncology_general_pipeline_en_4.2.2_3.0_1669899456383.zip){:.button.button-orange.button-orange-trans.arr.button-icon} + +## How to use + + + +
+{% include programmingLanguageSelectScalaPythonNLU.html %} +```python +from sparknlp.pretrained import PretrainedPipeline + +pipeline = PretrainedPipeline("oncology_general_pipeline", "en", "clinical/models") + +pipeline.annotate("The patient underwent a left mastectomy for a left breast cancer two months ago. +The tumor is positive for ER and PR.") + +``` +```scala +import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline + +val pipeline = new PretrainedPipeline("oncology_general_pipeline", "en", "clinical/models") + +val result = pipeline.fullAnnotate("""The patient underwent a left mastectomy for a left breast cancer two months ago. +The tumor is positive for ER and PR.""")(0) +``` +
+ +## Results + +```bash +******************** ner_oncology_wip results ******************** + +| chunk | ner_label | +|:---------------|:-----------------| +| left | Direction | +| mastectomy | Cancer_Surgery | +| left | Direction | +| breast cancer | Cancer_Dx | +| two months ago | Relative_Date | +| tumor | Tumor_Finding | +| positive | Biomarker_Result | +| ER | Biomarker | +| PR | Biomarker | + + +******************** ner_oncology_diagnosis_wip results ******************** + +| chunk | ner_label | +|:--------------|:--------------| +| breast cancer | Cancer_Dx | +| tumor | Tumor_Finding | + + +******************** ner_oncology_tnm_wip results ******************** + +| chunk | ner_label | +|:--------------|:------------| +| breast cancer | Cancer_Dx | +| tumor | Tumor | + + +******************** ner_oncology_therapy_wip results ******************** + +| chunk | ner_label | +|:-----------|:---------------| +| mastectomy | Cancer_Surgery | + + +******************** ner_oncology_test_wip results ******************** + +| chunk | ner_label | +|:---------|:-----------------| +| positive | Biomarker_Result | +| ER | Biomarker | +| PR | Biomarker | + + +******************** assertion_oncology_wip results ******************** + +| chunk | ner_label | assertion | +|:--------------|:---------------|:------------| +| mastectomy | Cancer_Surgery | Past | +| breast cancer | Cancer_Dx | Present | +| tumor | Tumor_Finding | Present | +| ER | Biomarker | Present | +| PR | Biomarker | Present | + + +******************** re_oncology_wip results ******************** + +| chunk1 | entity1 | chunk2 | entity2 | relation | +|:--------------|:-----------------|:---------------|:--------------|:--------------| +| mastectomy | Cancer_Surgery | two months ago | Relative_Date | is_related_to | +| breast cancer | Cancer_Dx | two months ago | Relative_Date | is_related_to | +| tumor | Tumor_Finding | ER | Biomarker | O | +| tumor | Tumor_Finding | PR | Biomarker | O | +| positive | Biomarker_Result | ER | Biomarker | is_related_to | +| positive | Biomarker_Result | PR | Biomarker | is_related_to | + + +******************** re_oncology_granular_wip results ******************** + +| chunk1 | entity1 | chunk2 | entity2 | relation | +|:--------------|:-----------------|:---------------|:--------------|:--------------| +| mastectomy | Cancer_Surgery | two months ago | Relative_Date | is_date_of | +| breast cancer | Cancer_Dx | two months ago | Relative_Date | is_date_of | +| tumor | Tumor_Finding | ER | Biomarker | O | +| tumor | Tumor_Finding | PR | Biomarker | O | +| positive | Biomarker_Result | ER | Biomarker | is_finding_of | +| positive | Biomarker_Result | PR | Biomarker | is_finding_of | +``` + +{:.model-param} +## Model Information + +{:.table-model} +|---|---| +|Model Name:|oncology_general_pipeline| +|Type:|pipeline| +|Compatibility:|Healthcare NLP 4.2.2+| +|License:|Licensed| +|Edition:|Official| +|Language:|en| +|Size:|1.7 GB| + +## Included Models + +- DocumentAssembler +- SentenceDetectorDLModel +- TokenizerModel +- WordEmbeddingsModel +- MedicalNerModel +- NerConverter +- MedicalNerModel +- NerConverter +- MedicalNerModel +- NerConverter +- MedicalNerModel +- NerConverter +- MedicalNerModel +- NerConverter +- ChunkMergeModel +- ChunkMergeModel +- AssertionDLModel +- PerceptronModel +- DependencyParserModel +- RelationExtractionModel +- RelationExtractionModel \ No newline at end of file diff --git a/docs/_posts/mauro-nievoff/2022-12-01-oncology_therapy_pipeline_en.md b/docs/_posts/mauro-nievoff/2022-12-01-oncology_therapy_pipeline_en.md new file mode 100644 index 00000000000000..d73d6e750ef661 --- /dev/null +++ b/docs/_posts/mauro-nievoff/2022-12-01-oncology_therapy_pipeline_en.md @@ -0,0 +1,141 @@ +--- +layout: model +title: Oncology Pipeline for Therapies +author: John Snow Labs +name: oncology_therapy_pipeline +date: 2022-12-01 +tags: [licensed, pipeline, oncology, en] +task: Named Entity Recognition +language: en +edition: Healthcare NLP 4.2.2 +spark_version: 3.0 +supported: true +article_header: + type: cover +use_language_switcher: "Python-Scala-Java" +--- + +## Description + +This pipeline includes Named-Entity Recognition and Assertion Status models to extract information from oncology texts. This pipeline focuses on entities related to therapies. + +{:.btn-box} + +[Open in Colab](https://colab.research.google.com/github/JohnSnowLabs/spark-nlp-workshop/blob/master/tutorials/Certification_Trainings/Healthcare/27.Oncology_Model.ipynb){:.button.button-orange.button-orange-trans.co.button-icon} +[Download](https://s3.amazonaws.com/auxdata.johnsnowlabs.com/clinical/models/oncology_therapy_pipeline_en_4.2.2_3.0_1669906146446.zip){:.button.button-orange.button-orange-trans.arr.button-icon} + +## How to use + + + +
+{% include programmingLanguageSelectScalaPythonNLU.html %} +```python +from sparknlp.pretrained import PretrainedPipeline + +pipeline = PretrainedPipeline("oncology_therapy_pipeline", "en", "clinical/models") + +pipeline.fullAnnotate("The patient underwent a mastectomy two years ago. She is currently receiving her second cycle of adriamycin and cyclophosphamide, and is in good overall condition.")[0] + +``` +```scala +import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline + +val pipeline = new PretrainedPipeline("oncology_therapy_pipeline", "en", "clinical/models") + +val result = pipeline.fullAnnotate("""The patient underwent a mastectomy two years ago. She is currently receiving her second cycle of adriamycin and cyclophosphamide, and is in good overall condition.""")(0) +``` +
+ +## Results + +```bash +******************** ner_oncology_wip results ******************** + +| chunk | ner_label | +|:-----------------|:---------------| +| mastectomy | Cancer_Surgery | +| second cycle | Cycle_Number | +| adriamycin | Chemotherapy | +| cyclophosphamide | Chemotherapy | + + +******************** ner_oncology_wip results ******************** + +| chunk | ner_label | +|:-----------------|:---------------| +| mastectomy | Cancer_Surgery | +| second cycle | Cycle_Number | +| adriamycin | Chemotherapy | +| cyclophosphamide | Chemotherapy | + + +******************** ner_oncology_wip results ******************** + +| chunk | ner_label | +|:-----------------|:---------------| +| mastectomy | Cancer_Surgery | +| second cycle | Cycle_Number | +| adriamycin | Cancer_Therapy | +| cyclophosphamide | Cancer_Therapy | + + +******************** ner_oncology_unspecific_posology_wip results ******************** + +| chunk | ner_label | +|:-----------------|:---------------------| +| mastectomy | Cancer_Therapy | +| second cycle | Posology_Information | +| adriamycin | Cancer_Therapy | +| cyclophosphamide | Cancer_Therapy | + + +******************** assertion_oncology_wip results ******************** + +| chunk | ner_label | assertion | +|:-----------------|:---------------|:------------| +| mastectomy | Cancer_Surgery | Past | +| adriamycin | Chemotherapy | Present | +| cyclophosphamide | Chemotherapy | Present | + + +******************** assertion_oncology_treatment_binary_wip results ******************** + +| chunk | ner_label | assertion | +|:-----------------|:---------------|:----------------| +| mastectomy | Cancer_Surgery | Present_Or_Past | +| adriamycin | Chemotherapy | Present_Or_Past | +| cyclophosphamide | Chemotherapy | Present_Or_Past | +``` + +{:.model-param} +## Model Information + +{:.table-model} +|---|---| +|Model Name:|oncology_therapy_pipeline| +|Type:|pipeline| +|Compatibility:|Healthcare NLP 4.2.2+| +|License:|Licensed| +|Edition:|Official| +|Language:|en| +|Size:|1.7 GB| + +## Included Models + +- DocumentAssembler +- SentenceDetectorDLModel +- TokenizerModel +- WordEmbeddingsModel +- MedicalNerModel +- NerConverter +- MedicalNerModel +- NerConverter +- MedicalNerModel +- NerConverter +- MedicalNerModel +- NerConverter +- ChunkMergeModel +- ChunkMergeModel +- AssertionDLModel +- AssertionDLModel \ No newline at end of file