Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

PdfContentImporter: java.lang.StringIndexOutOfBoundsException: String index out of range: 3 #7203

Closed
1 task done
koobs opened this issue Dec 18, 2020 · 0 comments · Fixed by #7207
Closed
1 task done

PdfContentImporter: java.lang.StringIndexOutOfBoundsException: String index out of range: 3 #7203

koobs opened this issue Dec 18, 2020 · 0 comments · Fixed by #7207
Labels
[outdated] type: bug Confirmed bugs or reports that are very likely to be bugs

Comments

@koobs
Copy link

koobs commented Dec 18, 2020

JabRef Version

JabRef 5.2--2020-12-14--e9be339
Windows 10 10.0 amd64 
Java 14.0.2

Summary

JabRef PDF Importer crashes attempting to process a PDF file

Additional Details (if relevent, obtained via Adobe Acrobat)

  • PDF Producer: GPL Ghostscript 8.70
  • PDF Version: 1.3 (Acrobat 4.x)
  • Tagged PDF: No

Steps to Reproduce

  1. Lookup -> Search for unlinked local files
  2. Select PDF file attached to this issue -> Import
Log File 
java.lang.StringIndexOutOfBoundsException: String index out of range: 3
  at java.base/java.lang.StringLatin1.charAt(Unknown Source)
  at java.base/java.lang.String.charAt(Unknown Source)
  at org.jabref@5.2.343/org.jabref.logic.importer.fileformat.PdfContentImporter.getEntryFromPDFContent(Unknown Source)
  at org.jabref@5.2.343/org.jabref.logic.importer.fileformat.PdfContentImporter.importDatabase(Unknown Source)
  at org.jabref@5.2.343/org.jabref.logic.externalfiles.ExternalFilesContentImporter.importPDFContent(Unknown Source)
  at org.jabref@5.2.343/org.jabref.gui.externalfiles.ImportHandler.importAsNewEntries(Unknown Source)
  at org.jabref@5.2.343/org.jabref.gui.externalfiles.FindUnlinkedFilesDialog.startImport(Unknown Source)
  at org.jabref@5.2.343/org.jabref.gui.externalfiles.FindUnlinkedFilesDialog.lambda$initialize$8(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.scene.control.Dialog.setResultAndClose(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.scene.control.DialogPane.lambda$createButton$3(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.event.Event.fireEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.scene.Node.fireEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.scene.control.Button.fire(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.scene.control.behavior.ButtonBehavior.mouseReleased(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.scene.control.inputmap.InputMap.handle(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.event.Event.fireEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.scene.Scene$MouseHandler.process(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.scene.Scene.processMouseEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.scene.Scene$ScenePeerListener.mouseEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(Unknown Source)
  at java.base/java.security.AccessController.doPrivileged(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleMouseEvent$2(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.glass.ui.View.handleMouseEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.glass.ui.View.notifyMouse(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.glass.ui.win.WinApplication._enterNestedEventLoopImpl(Native Method)
  at org.jabref.merged.module@5.2.343/com.sun.glass.ui.win.WinApplication._enterNestedEventLoop(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.glass.ui.Application.enterNestedEventLoop(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.glass.ui.EventLoop.enter(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.tk.quantum.QuantumToolkit.enterNestedEventLoop(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.stage.Stage.showAndWait(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.scene.control.HeavyweightDialog.showAndWait(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.scene.control.Dialog.showAndWait(Unknown Source)
  at org.jabref@5.2.343/org.jabref.gui.externalfiles.FindUnlinkedFilesAction.execute(Unknown Source)
  at org.jabref@5.2.343/org.jabref.gui.actions.JabRefAction.lambda$new$3(Unknown Source)
  at org.jabref.merged.module@5.2.343/org.controlsfx.control.action.Action.handle(Unknown Source)
  at org.jabref.merged.module@5.2.343/org.controlsfx.control.action.Action.handle(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.event.Event.fireEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.scene.control.MenuItem.fire(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.scene.control.ContextMenuContent$MenuItemContainer.doSelect(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.scene.control.ContextMenuContent$MenuItemContainer.lambda$createChildren$12(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.event.Event.fireEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.scene.Scene$MouseHandler.process(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.scene.Scene.processMouseEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/javafx.scene.Scene$ScenePeerListener.mouseEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(Unknown Source)
  at java.base/java.security.AccessController.doPrivileged(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleMouseEvent$2(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.glass.ui.View.handleMouseEvent(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.glass.ui.View.notifyMouse(Unknown Source)
  at org.jabref.merged.module@5.2.343/com.sun.glass.ui.win.WinApplication._runLoop(Native Method)
  at org.jabref.merged.module@5.2.343/com.sun.glass.ui.win.WinApplication.lambda$runLoop$3(Unknown Source)
  at java.base/java.lang.Thread.run(Unknown Source)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
[outdated] type: bug Confirmed bugs or reports that are very likely to be bugs
Projects
None yet
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

Fix pdf content importer exception if DOI is empty JabRef/jabref
2 participants
@Siedlerchr @koobs