install_instructions_Ubuntu.txt

# ==================================================== #
#            Thorsten Zirwes (07/20/2023)              #
# ==================================================== #

Install instructions for Ubuntu 2204:

install pre-requisite packages:

>sudo apt install build-essential
>sudo apt install python3-dev
>sudo apt-get install python3-pip
>sudo apt-get install -y cmake scons libboost-all-dev
>cd /usr/bin && sudo rm -f python && sudo ln -s python3 python
>pip3 install ipython matplotlib numpy ruamel.yaml cython pytest
>pip install --upgrade --user setuptools==58.3.0

add this line to your ~/.bashrc

export PATH="$HOME/.local/bin:$PATH"

then re-load the bashrc:

>source ~/.bashrc

set some temporary environment variables for the installation

>export compilerg=`which gcc`
>export compilergpp=`which g++`
>export pythonver=`which python3`

Prepare directory for installation:

>mkdir -p ~/Programs/Cantera && cd ~/Programs/Cantera
>mkdir -p Cantera_PMB_git && cd Cantera_PMB_git
>git clone --recursive https://github.com/IhmeGroup/PMCToolbox
>cd PMCToolbox

>scons build -j 8 prefix=$HOME/Programs/Cantera/Cantera_PMB_install python_cmd=$pythonver CC=$compilerg CXX=$compilergpp debug=no optimize=yes python_package=full system_sundials=n

If there are problems with missing python modules, set python_package=minimal

>scons install

in your ~/.bashrc, add the following line:

export PATH="$HOME/Programs/Cantera/Cantera_PMB_install/local/bin/:$PATH"

then, source the bashrc again:

>source ~/.bashrc

To run the example cases, go into the folder "PMB_example_cases" and the respective directories therein. Compile and run the examples by running the script

>./compile_example.sh