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single_cell_snakemake.yaml
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single_cell_snakemake.yaml
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name: base
channels:
- anaconda
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _r-mutex=1.0.1=anacondar_1
- aioeasywebdav=2.4.0=py37_1000
- aiohttp=3.6.2=py37h516909a_0
- appdirs=1.4.3=py_1
- asn1crypto=0.24.0=py37_0
- async-timeout=3.0.1=py_1000
- attrs=19.3.0=py_0
- bcrypt=3.1.7=py37h516909a_0
- binutils_impl_linux-64=2.33.1=h53a641e_8
- binutils_linux-64=2.33.1=h9595d00_16
- bioconductor-biobase=2.42.0=r351h14c3975_1
- bioconductor-biocgenerics=0.28.0=r351_1
- bioconductor-ebseq=1.24.0=r351_0
- boto3=1.12.13=py_0
- botocore=1.15.13=py_0
- bowtie=1.2.3=py37hc9558a2_0
- bwidget=1.9.14=0
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2019.11.28=hecc5488_0
- cachetools=3.1.1=py_0
- cairo=1.16.0=hfb77d84_1002
- certifi=2019.11.28=py37_0
- cffi=1.12.3=py37h2e261b9_0
- chardet=3.0.4=py37_1
- conda=4.8.2=py37_0
- conda-package-handling=1.3.11=py37_0
- configargparse=1.0=py_0
- cryptography=2.7=py37h1ba5d50_0
- curl=7.68.0=hf8cf82a_0
- datrie=0.8=py37h516909a_0
- decorator=4.4.2=py_0
- docutils=0.15.2=py37_0
- dropbox=9.4.0=py_0
- expat=2.2.9=he1b5a44_2
- fastqc=0.11.9=0
- fftw=3.3.8=nompi_h7f3a6c3_1110
- filechunkio=1.8=py_2
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=2.001=hab24e00_0
- font-ttf-source-code-pro=2.030=hab24e00_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.1=h86ecdb6_1001
- fonts-conda-forge=1=0
- freetype=2.10.0=he983fc9_1
- fribidi=1.0.5=h516909a_1002
- ftputil=3.4=py_0
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_16
- gdk-pixbuf=2.38.2=h3f25603_0
- gettext=0.19.8.1=hc5be6a0_1002
- gfortran_impl_linux-64=7.3.0=hdf63c60_5
- gfortran_linux-64=7.3.0=h553295d_16
- ghostscript=9.22=hf484d3e_1001
- giflib=5.2.1=h516909a_2
- gitdb=4.0.2=py_0
- gitpython=3.1.0=py_0
- glib=2.58.3=py37h6f030ca_1002
- gobject-introspection=1.58.2=py37h5503ade_1002
- google-api-core=1.16.0=py37_1
- google-auth=1.11.2=py_0
- google-cloud-core=1.3.0=py_0
- google-cloud-storage=1.26.0=py_0
- google-resumable-media=0.5.0=py_1
- googleapis-common-protos=1.51.0=py37_1
- graphite2=1.3.13=hf484d3e_1000
- graphviz=2.42.3=h0511662_0
- gsl=2.5=h294904e_1
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_16
- harfbuzz=2.4.0=h9f30f68_3
- htop=2.2.0=hf8c457e_1000
- htslib=1.9=h4da6232_3
- icu=64.2=he1b5a44_1
- idna=2.8=py37_0
- imagemagick=7.0.9_27=pl526ha9fe49d_0
- importlib_metadata=1.5.0=py37_0
- ipython_genutils=0.2.0=py_1
- jbig=2.1=h14c3975_2001
- jinja2=2.11.1=py_0
- jmespath=0.9.5=py_0
- jpeg=9c=h14c3975_1001
- jsonschema=3.2.0=py37_0
- jupyter_core=4.6.3=py37_0
- krb5=1.16.4=h173b8e3_0
- ld_impl_linux-64=2.33.1=h53a641e_8
- libarchive=3.3.3=h5d8350f_5
- libblas=3.8.0=14_openblas
- libcblas=3.8.0=14_openblas
- libcroco=0.6.13=h8d621e5_0
- libcurl=7.68.0=hda55be3_0
- libdeflate=1.5=h516909a_0
- libedit=3.1.20181209=hc058e9b_0
- libffi=3.2.1=hd88cf55_4
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran=3.0.0=1
- libgfortran-ng=7.3.0=hdf63c60_5
- libiconv=1.15=h516909a_1005
- liblapack=3.8.0=14_openblas
- libopenblas=0.3.7=h5ec1e0e_6
- libpng=1.6.37=hed695b0_0
- libprotobuf=3.11.4=h8b12597_0
- librsvg=2.46.4=h33a7fed_0
- libssh2=1.8.2=h22169c7_2
- libstdcxx-ng=9.1.0=hdf63c60_0
- libtiff=4.1.0=h2733197_0
- libtool=2.4.6=h14c3975_1002
- libuuid=2.32.1=h14c3975_1000
- libwebp=1.0.2=h56121f0_5
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.10=hee79883_0
- lz4-c=1.8.1.2=h14c3975_0
- lzo=2.10=h49e0be7_2
- make=4.3=h516909a_0
- markupsafe=1.1.1=py37h516909a_0
- multidict=4.7.5=py37h516909a_0
- mysql-connector-c=6.1.11=hc9bbbdd_1005
- nbformat=5.0.4=py_0
- ncurses=6.1=he6710b0_1
- networkx=2.4=py_0
- numpy=1.18.1=py37h95a1406_0
- openjdk=8.0.152=h7b6447c_2
- openjpeg=2.3.1=h981e76c_3
- openssl=1.1.1d=h516909a_0
- pandas=1.0.1=py37hb3f55d8_0
- pango=1.42.4=ha030887_1
- paramiko=2.7.1=py37_0
- pcre=8.44=he1b5a44_0
- perl=5.26.2=h516909a_1006
- perl-app-cpanminus=1.7044=pl526_1
- perl-carp=1.38=pl526_3
- perl-constant=1.33=pl526_1
- perl-cpan-meta=2.150010=pl526_0
- perl-cpan-meta-requirements=2.140=pl526_0
- perl-cpan-meta-yaml=0.018=pl526_0
- perl-data-dumper=2.173=pl526_0
- perl-encode=2.88=pl526_1
- perl-exporter=5.72=pl526_1
- perl-extutils-cbuilder=0.280230=pl526_1
- perl-extutils-makemaker=7.36=pl526_1
- perl-extutils-manifest=1.72=pl526_0
- perl-extutils-parsexs=3.35=pl526_0
- perl-file-path=2.16=pl526_0
- perl-file-temp=0.2304=pl526_2
- perl-getopt-long=2.50=pl526_1
- perl-ipc-cmd=1.02=pl526_0
- perl-json-pp=4.04=pl526_0
- perl-locale-maketext-simple=0.21=pl526_2
- perl-module-build=0.4224=pl526_3
- perl-module-corelist=5.20190524=pl526_0
- perl-module-load=0.32=pl526_1
- perl-module-load-conditional=0.68=pl526_2
- perl-module-metadata=1.000036=pl526_0
- perl-params-check=0.38=pl526_1
- perl-parent=0.236=pl526_1
- perl-perl-ostype=1.010=pl526_1
- perl-scalar-list-utils=1.52=pl526h516909a_0
- perl-text-abbrev=1.02=pl526_0
- perl-text-parsewords=3.30=pl526_0
- perl-version=0.9924=pl526_0
- pip=19.1.1=py37_0
- pixman=0.38.0=h516909a_1003
- pkg-config=0.29.2=h516909a_1006
- prettytable=0.7.2=py_3
- protobuf=3.11.4=py37he1b5a44_0
- psutil=5.7.0=py37h516909a_0
- pthread-stubs=0.4=h14c3975_1001
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycosat=0.6.3=py37h14c3975_0
- pycparser=2.19=py37_0
- pygments=2.5.2=py_0
- pygraphviz=1.3=py37h14c3975_1
- pynacl=1.3.0=py37h516909a_1001
- pyopenssl=19.0.0=py37_0
- pyrsistent=0.15.7=py37h516909a_0
- pysftp=0.2.9=py_1
- pysocks=1.7.0=py37_0
- python=3.7.6=h357f687_2
- python-dateutil=2.8.1=py_0
- python-irodsclient=0.8.2=py_0
- python-libarchive-c=2.8=py37_11
- pytz=2019.3=py_0
- pyyaml=5.1.2=py37h516909a_0
- r-assertthat=0.2.1=r35h6115d3f_1
- r-backports=1.1.5=r35hcdcec82_0
- r-base=3.5.1=hc461eb7_1012
- r-bibtex=0.4.2.2=r35hcdcec82_0
- r-bitops=1.0_6=r35hcdcec82_1003
- r-blockmodeling=0.3.6=r35h9bbef5b_0
- r-callr=3.4.2=r35h6115d3f_0
- r-catools=1.17.1.4=r35h0357c0b_0
- r-cli=2.0.1=r35h6115d3f_0
- r-codetools=0.2_16=r35h6115d3f_1001
- r-crayon=1.3.4=r35h6115d3f_1002
- r-desc=1.2.0=r35h6115d3f_1002
- r-digest=0.6.25=r35h0357c0b_0
- r-doparallel=1.0.15=r35h6115d3f_0
- r-dorng=1.8.2=r35h6115d3f_0
- r-ellipsis=0.3.0=r35hcdcec82_0
- r-evaluate=0.14=r35h6115d3f_1
- r-fansi=0.4.1=r35hcdcec82_0
- r-foreach=1.4.8=r35h6115d3f_0
- r-gdata=2.18.0=r35h6115d3f_1002
- r-glue=1.3.1=r35hcdcec82_1
- r-gplots=3.0.3=r35h6115d3f_0
- r-gtools=3.8.1=r35hcdcec82_1003
- r-iterators=1.0.12=r35h6115d3f_0
- r-kernsmooth=2.23_16=r35h9bbef5b_0
- r-lattice=0.20_40=r35hcdcec82_0
- r-magrittr=1.5=r35h6115d3f_1002
- r-matrix=1.2_18=r35hcdcec82_0
- r-pkgbuild=1.0.6=r35h6115d3f_0
- r-pkgload=1.0.2=r35h0357c0b_1001
- r-pkgmaker=0.31=r35h6115d3f_0
- r-praise=1.0.0=r35h6115d3f_1003
- r-prettyunits=1.1.1=r35h6115d3f_0
- r-processx=3.4.2=r35hcdcec82_0
- r-ps=1.3.2=r35hcdcec82_0
- r-r6=2.4.1=r35h6115d3f_0
- r-registry=0.5_1=r35h6115d3f_1
- r-rlang=0.4.4=r35hcdcec82_0
- r-rngtools=1.5=r35h6115d3f_0
- r-rprojroot=1.3_2=r35h6115d3f_1002
- r-rstudioapi=0.11=r35h6115d3f_0
- r-stringi=1.4.3=r35h0357c0b_2
- r-stringr=1.4.0=r35h6115d3f_1
- r-testthat=2.3.1=r35h0357c0b_0
- r-withr=2.1.2=r35h6115d3f_1001
- r-xtable=1.8_4=r35h6115d3f_2
- ratelimiter=1.2.0=py37_1000
- readline=8.0=hf8c457e_0
- requests=2.22.0=py37_0
- rsa=4.0=py_0
- rsem=1.3.3=pl526ha52163a_0
- ruamel_yaml=0.15.46=py37h14c3975_0
- s3transfer=0.3.3=py37_0
- samtools=1.9=h10a08f8_12
- setuptools=41.0.1=py37_0
- six=1.12.0=py37_0
- smmap=3.0.1=py_0
- snakemake=5.10.0=0
- snakemake-minimal=5.10.0=py_0
- sqlite=3.30.1=hcee41ef_0
- tbb=2019.9=hc9558a2_1
- tk=8.6.10=hed695b0_0
- tktable=2.10=h14c3975_0
- toposort=1.5=py_3
- tqdm=4.32.1=py_0
- traitlets=4.3.3=py37_0
- ucsc-bigwigsummary=357=1
- urllib3=1.24.2=py37_0
- wheel=0.33.4=py37_0
- wrapt=1.12.0=py37h516909a_0
- xmlrunner=1.7.7=py_0
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.9=h516909a_0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxpm=3.5.13=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-libxt=1.1.5=h516909a_1003
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.4=h14c3975_4
- yaml=0.1.7=had09818_2
- yarl=1.3.0=py37h516909a_1000
- zipp=3.1.0=py_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.3.7=h0b5b093_0
prefix: /opt/miniconda3