MAPL 2.22.0

This is a zero-diff minor release of MAPL. The main changes in these release are:

• Fix in pfio when missing values are NaN
• Fix in History when trying to write to a file that already exists
• CMake updates for better building with Spack
• Added monotonic regridding option
• Various CI improvements

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From CHANGELOG.md

Fixed

• By pass the check of the missing value of Nan
• Update CI to work with latest GEOSadas develop (Uses a special branch of GEOSadas)
• Fix bundleio tests
• HistoryGridComp now checks if a file exists already before writing and errors out if so
• Minor updates for FORD documentation testing
  • Add program statements to some test programs
  • Remove pfio/pfio_io_demo.F90 as dead code
  • Fix redefinition of _RETURN in pflogger_stub.F90
  • Removed unused Test_SimpleClient.pf
• Update CMake to require NetCDF C components and add NetCDF::NetCDF_C to pfio CMake

Added

• Updated MAPL_CapGridComp to mark fields going to ExtData to not be checkpointed by components
• Add debug loggers for start/stop during stages in MAPL_Generic
• Handling for double precision input when retrieving single precision attributes
• Enable GCM run test in CircleCI (1-hour, no ExtData)
• Added monotonic regridding option
• Make available to History and ExtData2G all supported regridding methods
• Add test cases for ExtData
• Add YAML validator GitHub Action
  • This action makes sure all YAML files are valid (to a relaxed standard)

Changed

• Modified error messages in FileMetadataUtilities to be unique and print filename
• Updated the ESMA_env version to v3.14.0
• Updated the ESMA_cmake version to v3.17.0
• Updated GitHub Actions MAPL build tests
• Added assert for missing file with ExtData2G
• Re-enable bundleio tests in CI
• Updated CircleCI to use latest Baselibs
• Updates for Spack support
  • Add find_package(MPI) for non-Baselibs builds
  • Add explicit interface dependence of MPI for ESMF target
  • Add esmf alias library for ESMF for compatibility

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What's Changed

• Fix ADAS CI by @mathomp4 in #1509
• Add loggers for generic stages by @mathomp4 in #1510
• Expand allowed _FillValue type and error handling in FileMetadataUtilities.F90 by @lizziel in #1506
• Enable GCM run in CI by @mathomp4 in #1466
• Automatic restart skip by @bena-nasa in #1516
• GitFlow: Handmerge main into develop 2022-May-24 by @mathomp4 in #1525
• Monotonic regridding by @bena-nasa in #1528
• GitFlow: Handmerge main into develop (2022-May-31) by @mathomp4 in #1534
• Update to ESMA_cmake v3.16.0 by @mathomp4 in #1540
• Fixes #1544. Adds _ASSERT for missing ExtData file by @mathomp4 in #1545
• Handmerge main into develop - 2022-Jun-07 by @mathomp4 in #1553
• Fix bundleio tests by @bena-nasa in #1559
• Enable bundleio tests in CI by @mathomp4 in #1561
• fixes #1565 by @bena-nasa in #1566
• Add ExtData Testing Framework by @bena-nasa in #1556
• Updates for FORD Testing by @mathomp4 in #1570
• Update components.yaml to latest env and cmake by @mathomp4 in #1572
• More Updates for Spack/non-Baselibs Compatibility by @mathomp4 in #1550
• Add NetCDF C requirement to CMake by @mathomp4 in #1578
• by pass missing value of NaN by @weiyuan-jiang in #1576
• Add YAML Linter by @mathomp4 in #1580
• Update CHANGELOG and CMakeLists for 2.22.0 Release by @mathomp4 in #1583
• Merge develop into main for 2.22.0 release by @mathomp4 in #1584

Full Changelog: v2.21.3...v2.22.0

MAPL 2.21.3

This is a bugfix release of MAPL that fixes a bug found during single-column model (SCM) testing. It is zero-diff for normal, cubed-sphere running of GEOS.

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From CHANGELOG.md

Fixed

• Fixed bug in non cubed-sphere grid path in MAPL_GetHorzIJIndex

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What's Changed

• fixes #1549 by @bena-nasa in #1551

Full Changelog: v2.21.2...v2.21.3

MAPL 2.21.2

This is a bugfix release which has a fix for an issue (#1530) which exposed an uninitialized logical when passing to Cap an external clock.

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From CHANGELOG.md

Fixed

• Initialize cap%lperp in MAPL_CapGridComp.F90 (see Issue #1530)

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What's Changed

• Hotfix 1530: Initialize lperp by @mathomp4 in #1531

Full Changelog: v2.21.1...v2.21.2

MAPL 2.12.3

This is a bugfix release on the MAPL 2.12 series. This release has a fix for an issue (#1530) which exposed an uninitialized logical when passing to Cap an external clock.

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From CHANGELOG.md

Fixed

• Initialize cap%lperp in MAPL_CapGridComp.F90 (see Issue #1530)

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Full Changelog: v2.12.2...v2.12.3

MAPL 2.21.1

This is a patch release on MAPL 2.21.0 to add missing _RETURN and _VERIFY macros.

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From CHANGELOG.md

Fixed

• Adding missing _RETURN and _VERIFY macros in GriddedIO.F90
• Update CircleCI to work with latest GEOSadas

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What's Changed

• fixes #1522 by @bena-nasa in #1523

Full Changelog: v2.21.0...v2.21.1

MAPL 2.21.0

This is a zero-diff release of MAPL. There are fixes and additions to the use of PRINTSPEC in CAP.rc, fixes to prevent ESMF errors when ESMF logging is turned on, as well as a new function to FileMetadata.

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From CHANGELOG.md

Fixed

• Fixed incorrect legend when using PRINTSPEC option in MAPL Cap
• Fix ESMF errors exposed by monthly collections

Added

• Added has_variable function to FileMetadata
• Added information about the container type for each item in state when using PRINTSPEC option

Changed

• Change many instances of _ASSERT(.false.,"msg") to _FAIL("msg")
• Extended format width for exclusive and inclusive times in profiler from f9.2 to f10.2 (see #1420)

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What's Changed

• fixes #1490 by @bena-nasa in #1491
• Closes #1378. Convert many _ASSERT(.false.) to _FAIL() by @mathomp4 in #1493
• Closes #1495. Correct ESMF errors with monthly collections by @mathomp4 in #1496
• Closes #1420. Extend profiler width by @mathomp4 in #1498
• add variable inquiry function to FileMetadata by @weiyuan-jiang in #1500
• Prepare for 2.21.0 Release by @mathomp4 in #1502
• Merge Develop into main for 2.21.0 release by @mathomp4 in #1504

Full Changelog: v2.20.0...v2.21.0

MAPL 2.20.0

This is a zero-diff minor release of MAPL. Two new features have been added for couplers and ExtData2G as well as various fixes.

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From CHANGELOG.md

Fixed

• Removed one redundant get_file_extension call
• Fix issue where ACG was called when no file had changed
• Add missing rc=status in MAPL_GetResourceFromMAPL_scalar
• Fixed bugs with next generation ExtData
• Fixed variable PTR40 declaration in GenericCplComp.F90

Added

• Added support for 4d variables in the coupler. Intentionally decided not to support 4d in the coupler's ReadRestart and WriteRestart to catch errors
• Added ability to use multiple rules for different time periods in next generation ExtData

Changed

• Cleaned up a bit of old CMake
• Updated CircleCI config to use new orb build job
• Updated components.yaml to match GEOSgcm v10.22.1
  • ESMA_env v3.13.0
  • ESMA_cmake v3.12.0

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What's Changed

• Fix issue with calling ACG multiple times by @mathomp4 in #1448
• Update CI to use orb build job, Update components.yaml by @mathomp4 in #1450
• GitFlow: Handmerge main into develop by @mathomp4 in #1458
• GitFlow: Handmerge main into develop 2022-Mar-299 by @mathomp4 in #1463
• Add missing rc=status by @mathomp4 in #1467
• Fixes #1455. Added support for 4d variables except in coupler's readR… by @atrayano in #1469
• Fix typo in mapl_tree.py by @mathomp4 in #1471
• ExtData2G updates, bugs fixes and multiple filestream feature. by @bena-nasa in #1475
• remove one redundant get_file_extension call by @weiyuan-jiang in #1480
• Fixes #1483. Fixed the rank of variable declaration by @atrayano in #1484
• Prepare for 2.20.0 Release by @mathomp4 in #1481
• more infomation if get_var fails by @weiyuan-jiang in #1339
• Merge develop into main for 2.20.0 release by @mathomp4 in #1486

Full Changelog: v2.19.2...v2.20.0

MAPL 2.19.2

This patch release of MAPL 2.19 provides a workaround for a GNU Fortran bug when defining metadata in the cubed-sphere factory

Zero-diff to previous release.

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From CHANGELOG.md

Fixed

• Provided workaround for GNU bug when defining file metadata in cubed-sphere grid factory (similar to Issue #1433 and its solution)

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What's Changed

• Fix GNU Cubed Sphere Factory Bug by @mathomp4 in #1461

Full Changelog: v2.19.1...v2.19.2

MAPL 2.19.1

This is a patch release of MAPL 2.19. It fixes a bug deallocating a pointer potentially pointing to shared memory allocated by MAPL_Shmem

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From CHANGELOG.md

Fixed

• Fix a bug deallocating a pointer potentially pointing to shared memory allocated by MAPL_Shmem

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What's Changed

• Fixes #1454. Now MAPL_Shmem memory is deallocated properly by @atrayano in #1456

Full Changelog: v2.19.0...v2.19.1

MAPL 2.19.0

This release of MAPL has many updates and fixes to support GEOS and GOCART development. These include:

• Building of the next-generation ExtData2G (use controlled by USE_EXTDATA2G CMake option)
• Fixes to the Automatic Code Generation Python script for GOCART development
• Fixes to allow building MAPL on M1 Macs
• And more (see below)

All testing shows this release is zero-diff for GEOSgcm versus MAPL 2.18.3

From CHANGELOG.md

Fixed

• Fixed duration of the clock to be the smaller of the user specified duration and (END_DATE - currTime)
• Fixes for compiling on M1 Macs (remove REAL128)
• Fix for CMake when esmf is already a target

Added

• New cmake option USE_EXTDATA2G to enable the next generation of ExtData for development, by default uses 1st generation ExtData
• MAPL_ESMFFieldBundleRead/Write modules are now available in when using MAPL

Changed

• Replaced a wild card "*" in any position of a string in MAPL_GridCompSpecs_ACG.py
• Updated MAPL_SunGetSolarConstantFromNRLFile to open NRL Solar Table file only on root and broadcast the tables to all processes. Now all processes do interpolation.
• Add voting interpolation method as optional argument to SimpleBundleRead method

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What's Changed

• New generic set_services is now in place with the legacy interface being by @tclune in #1359
• Added new gauge for memory profiling. by @tclune in #1362
• Fixes 1379. Limited the duration of the clock by @atrayano in #1381
• GitFlow: Handmerge of main into develop 2022-Feb-23 by @mathomp4 in #1390
• Revert "Added new gauge for memory profiling." by @mathomp4 in #1392
• Reverts the changes from PR #1359 by @mathomp4 in #1394
• Fixes #1382. Update NRL solar table read code by @mathomp4 in #1383
• Expose new MAPL field bundle subroutines via "use MAPL" by @bena-nasa in #1398
• Improve missing file error handling for untemplated filenames by @lizziel in #1377
• Add voting interpolation method as optional argument to SimpleBundleRead method by @christophkeller in #1402
• GitFlow: Handmerge main into develop 2022-Mar-07 by @mathomp4 in #1414
• Bring ExtData2G into develop via optional build argument to cmake by @bena-nasa in #1400
• Auto GitFlow - main → develop by @github-actions in #1425
• Auto GitFlow - main → develop by @github-actions in #1431
• Auto GitFlow - main → develop by @github-actions in #1435
• Fixes from M1 work by @mathomp4 in #1439
• more flexible mangled names by @weiyuan-jiang in #1401
• Prepare for 2.19.0 Release by @mathomp4 in #1444
• GitFlow: Merge develop into main for 2.19.0 release by @mathomp4 in #1446

New Contributors

• @christophkeller made their first contribution in #1402

Full Changelog: v2.18.3...v2.19.0