From 6591cf237cfeb411528d8056632a91a5ab583370 Mon Sep 17 00:00:00 2001 From: dimalvovs Date: Thu, 5 Sep 2024 17:38:06 -0400 Subject: [PATCH] add imscores to main pipeline --- main.nf | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/main.nf b/main.nf index 44cc74c..90b74fa 100644 --- a/main.nf +++ b/main.nf @@ -1,11 +1,10 @@ nextflow.enable.dsl=2 include { PREPROCESS } from './modules/local/preprocess.nf' -include { SPACEMARKERS } from './modules/local/spacemarkers.nf' include { COGAPS } from './modules/local/cogaps.nf' -include { SPACEMARKERS_MQC } from './modules/local/spacemarkers.nf' - - +include { SPACEMARKERS; + SPACEMARKERS_MQC; + SPACEMARKERS_IMSCORES } from './modules/local/spacemarkers.nf' workflow COSPACE { @@ -26,6 +25,9 @@ workflow COSPACE { ch_spacemarkers_mqc = SPACEMARKERS.out.spaceMarkers.map { tuple(it[0], it[1]) } SPACEMARKERS_MQC(ch_spacemarkers_mqc) + ch_spacemarkers_imscores = SPACEMARKERS.out.spaceMarkers.map { tuple(it[0], it[1]) } + SPACEMARKERS_IMSCORES(ch_spacemarkers_imscores) + emit: dgCMatrix = PREPROCESS.out.dgCMatrix cogapsResult = COGAPS.out.cogapsResult