From 07ec5a27e4d16a703a7d05e305e7359ca5d47c05 Mon Sep 17 00:00:00 2001 From: dimalvovs Date: Sat, 31 Aug 2024 11:25:02 -0400 Subject: [PATCH] debug add multiqc --- main.nf | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/main.nf b/main.nf index 040b2ab..44cc74c 100644 --- a/main.nf +++ b/main.nf @@ -1,9 +1,11 @@ nextflow.enable.dsl=2 -include { PREPROCESS } from './modules/local/preprocess' -include { SPACEMARKERS } from './modules/local/spacemarkers' -include { COGAPS } from './modules/local/cogaps' -include { SPACEMARKERS_MQC } from './modules/local/spacemakers' +include { PREPROCESS } from './modules/local/preprocess.nf' +include { SPACEMARKERS } from './modules/local/spacemarkers.nf' +include { COGAPS } from './modules/local/cogaps.nf' +include { SPACEMARKERS_MQC } from './modules/local/spacemarkers.nf' + + workflow COSPACE {