Fix CAM7 regression tests

[peverwhee]

Tag name (required for release branches): sima0_00_003
Originator(s): peverwhee

Description (include the issue title, and the keyword ['closes', 'fixes', 'resolves'] followed by the issue number):

Updates framework tag to include bugfix for groups - closes #335
Updates atmospheric_physics external to use apply_constituent_tendencies
Updates git-fleixmod to 0.9.4

Describe any changes made to build system: n/a

Describe any changes made to the namelist: n/a

List any changes to the defaults for the input datasets (e.g. boundary datasets): n/a

List all files eliminated and why: n/a

List all files added and what they do: n/a

List all existing files that have been modified, and describe the changes:
(Helpful git command: git diff --name-status development...<your_branch_name>)

M .gitmodules

• update ccpp-framework and atmospheric_physics tags

M .lib/git-fleixmod/*

• update git-fleixmod to 0.9.4

M test/existing-test-failures.txt

• only MPAS tests still fail

If there are new failures (compared to the test/existing-test-failures.txt file),
have them OK'd by the gatekeeper, note them here, and add them to the file.
If there are baseline differences, include the test and the reason for the
diff. What is the nature of the change? Roundoff?

derecho/intel/aux_sima: All PASS except MPAS; new baselines for CAM7 (test never passed before)

derecho/gnu/aux_sima: All PASS except MPAS; new baselines for CAM7 (test never passed before)

If this changes climate describe any run(s) done to evaluate the new
climate in enough detail that it(they) could be reproduced:

CAM-SIMA date used for the baseline comparison tests if different than latest:

[jimmielin]

Thanks @peverwhee!

[nusbaume]

Thanks for updating git-fleximod too!