environment.yml

name: spade
channels:
  - bioconda
  - conda-forge
dependencies:
  - ninja==1.10.2=h4bd325d_1
  - pytorch==1.9.1=py3.9_cuda11.1_cudnn8.0.5_0
  - libtiff==4.2.0=h85742a9_0
  - mkl==2021.3.0=h726a3e6_557
  - libgcc-ng==11.2.0=h1d223b6_9
  - mkl_fft==1.3.0=py39h42c9631_2
  - blas==1.0=mkl
  - python==3.9.7=hf930737_3_cpython
  - libwebp-base==1.2.1=h7f98852_0
  - typing_extensions==3.10.0.2=pyha770c72_0
  - freetype==2.10.4=h0708190_1
  - lz4-c==1.9.3=h9c3ff4c_1
  - six==1.16.0=pyh6c4a22f_0
  - mkl-service==2.4.0=py39h3811e60_0
  - zstd==1.4.9=ha95c52a_0
  - zlib==1.2.11=h36c2ea0_1013
  - cudatoolkit==11.1.74=h6bb024c_0
  - mkl_random==1.2.2=py39hde0f152_0
  - readline==8.1=h46c0cb4_0
  - lcms2==2.12=h3be6417_0
  - gmp==6.2.1=h58526e2_0
  - pillow==8.3.1=py39h2c7a002_0
  - numpy==1.20.3=py39hf144106_0
  - libuv==1.42.0=h7f98852_0
  - pip==21.2.4=pyhd8ed1ab_0
  - _libgcc_mutex==0.1=conda_forge
  - torchaudio==0.9.1=py39
  - wheel==0.37.0=pyhd8ed1ab_1
  - libpng==1.6.37=h21135ba_2
  - python_abi==3.9=2_cp39
  - llvm-openmp==12.0.1=h4bd325d_1
  - openssl
  - xz==5.2.5=h516909a_1
  - ffmpeg==4.3=hf484d3e_0
  - olefile==0.46=pyh9f0ad1d_1
  - lame==3.100=h7f98852_1001
  - ld_impl_linux-64==2.36.1=hea4e1c9_2
  - libzlib==1.2.11=h36c2ea0_1013
  - openh264==2.1.1=h780b84a_0
  - sqlite==3.36.0=h9cd32fc_2
  - torchvision==0.10.1=py39_cu111
  - numpy-base==1.20.3=py39h74d4b33_0
  - bzip2==1.0.8=h7f98852_4
  - libiconv==1.16=h516909a_0
  - libstdcxx-ng==11.2.0=he4da1e4_9
  - ncurses==6.2=h58526e2_4
  - tk==8.6.11=h27826a3_1
  - ca-certificates
  - openjpeg==2.4.0=hb52868f_1
  - gnutls==3.6.13=h85f3911_1
  - jpeg==9b=h024ee3a_2
  - libffi==3.4.2=h9c3ff4c_4
  - tbb==2021.3.0=h4bd325d_0
  - tzdata==2021b=he74cb21_0
  - _openmp_mutex==4.5=1_llvm
  - nettle==3.6=he412f7d_0
  - python-dotenv
  - hydra-core
  - colorlog
  - rich
  - debugpy
  - path
  - certifi
  - torchtext=0.12.0
  - swifter
  - einops
  - plotly
  - pyranges
  - roman
  - joblib
  - regex
  - samtools
  - umap-learn
  - datashader
  - holoviews
  - pybigwig
  - statannotations
  - gensim
prefix: /opt/modules/i12g/anaconda/envs/motifs