This repository was archived by the owner on Feb 6, 2024. It is now read-only.
-
Notifications
You must be signed in to change notification settings - Fork 44
index
Minh Bui edited this page Aug 9, 2018
·
9 revisions
| Date | Course Title | Location | Instructor |
|---|---|---|---|
| Jan 24, 2019 | IQ-TREE intro and tutorial | Workshop on Phylogenomics, Cesky Krumlov, Czech Republic | Stephen Crotty |
| Date | Course Title | Location | Instructor |
|---|---|---|---|
| Jul 24, 2018 | IQ-TREE | Workshop on Molecular Evolution, Woods Hole, USA | Bui Quang Minh |
Copyright (c) 2010-2016 IQ-TREE development team.
- First example
- Model selection
- New model selection
- Codon models
- Binary, Morphological, SNPs
- Ultrafast bootstrap
- Nonparametric bootstrap
- Single branch tests
- Partitioned analysis
- Partitioning with mixed data
- Partition scheme selection
- Bootstrapping partition model
- Utilizing multi-core CPUs
- Tree topology tests
- User-defined models
- Consensus construction and bootstrap value assignment
- Computing Robinson-Foulds distance
- Generating random trees
- DNA models
- Protein models
- Codon models
- Binary, morphological models
- Ascertainment bias correction
- Rate heterogeneity
- Counts files
- First running example
- Substitution models
- Virtual population size
- Sampling method
- Bootstrap branch support
- Interpretation of branch lengths