issues Search Results · repo:CellProfiler/CellProfiler-plugins language:Python
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inCellProfiler/CellProfiler-plugins (press backspace or delete to remove)Hello, I get this message when opening a pipeline built a few months ago before downloading the new repository.
Image
However, the pipeline starts and segments my images.
When selecting one of the suggested ...
Rhopenny-87
- 2
- Opened 17 days ago
- #271
If an object label image with no objects is run through EnforceObjectsOneToOne for both pre-primary and pre-secondary
objects (see attached EnforceObjectsOneToOne_pipeline.zip), the following error results: ...
braymp
- Opened on Feb 1
- #270
Multiple times I have received Barcodes.csv from collaborators where the Gene or ID column is left blank for sgRNAs that
are nontargeting. This can create problems in downstream workflows so it would be ...
enhancement
ErinWeisbart
- Opened on Jan 10
- #268
After trying to run the runcellpose module I get the following error:
File /path/to/conda/env/lib/python3.8/site-packages/cellprofiler/gui/pipelinecontroller.py , line 3390, in do_step
self.__pipeline.run_module(module, ...
MikeLippincott
- 2
- Opened on Dec 6, 2024
- #264
After clicking the Test GPU button in the RunCellpose module, this error shows up in my stdout:
Traceback (most recent call last):
File /path/to/conda/env/lib/python3.8/site-packages/cellprofiler/gui/module_view/_module_view.py ...
- 1
- Opened on Dec 5, 2024
- #263
When using Runilastik on an ilastik project file that was trained with multichannel input, even if we give it the
same/correct image, it barfs. I suspect it s an ordering issue - ilastik expects c,y,x, ...
bethac07
- Opened on Sep 10, 2024
- #260
- enable string.contains as option
- hardcoded to only search Barcode_BarcodeCalled - enable selection of measurement column
enhancement
- 1
- Opened on Aug 14, 2024
- #255
When I ran the command pytest tests under the CellProfiler-plugins folder, it reported errors shown below. I had already
run the pip install -e . and pip install -e .[imagejscript] for dependencies installation ...
binliunls
- Opened on Aug 8, 2024
- #253
Firstly, my versioning information:
CellProfiler version: 4.2.7
cellpose version: 3.0.7
platform: win32
python version: 3.8.19
torch version: 2.4.0
conda version: ...
kmshort
- 1
- Opened on Aug 8, 2024
- #252
Version of Cellprofiler: 4.2.6 (source installation)
After running a pipeline (on Analysis mode) containing two RunCellpose modules running with Docker, the pipeline gets
stuck on post processing. This ...
emiglietta
- 3
- Opened on Jul 31, 2024
- #251
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