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medcat_env.yaml
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name: medcat_env
channels:
- bioconda
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- bzip2=1.0.8=h4bc722e_7
- ca-certificates=2024.7.4=hbcca054_0
- ld_impl_linux-64=2.40=hf3520f5_7
- libffi=3.4.2=h7f98852_5
- libgcc-ng=14.1.0=h77fa898_0
- libgomp=14.1.0=h77fa898_0
- libnsl=2.0.1=hd590300_0
- libsqlite=3.46.0=hde9e2c9_0
- libuuid=2.38.1=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libzlib=1.3.1=h4ab18f5_1
- ncurses=6.5=h59595ed_0
- openssl=3.3.1=h4bc722e_2
- pip=24.2=pyhd8ed1ab_0
- python=3.10.14=hd12c33a_0_cpython
- readline=8.2=h8228510_1
- setuptools=72.1.0=pyhd8ed1ab_0
- tk=8.6.13=noxft_h4845f30_101
- wheel=0.43.0=pyhd8ed1ab_1
- xz=5.2.6=h166bdaf_0
- pip:
- accelerate==0.33.0
- aiofiles==24.1.0
- aiohappyeyeballs==2.3.4
- aiohttp==3.10.0
- aiosignal==1.3.1
- asttokens==2.4.1
- async-timeout==4.0.3
- attrs==24.1.0
- blis==0.7.11
- catalogue==2.0.10
- certifi==2024.7.4
- charset-normalizer==3.3.2
- click==8.1.7
- cloudpathlib==0.18.1
- comm==0.2.2
- confection==0.1.5
- cymem==2.0.8
- datasets==2.20.0
- decorator==5.1.1
- dill==0.3.8
- exceptiongroup==1.2.2
- executing==2.0.1
- filelock==3.15.4
- frozenlist==1.4.1
- fsspec==2024.5.0
- gensim==4.3.3
- gputil==1.4.0
- huggingface-hub==0.24.5
- humanfriendly==10.0
- humanize==4.10.0
- idna==3.7
- ipython==8.26.0
- ipywidgets==8.1.3
- jedi==0.19.1
- jinja2==3.1.4
- joblib==1.4.2
- jsonpickle==3.2.2
- jupyterlab-widgets==3.0.11
- langcodes==3.4.0
- language-data==1.2.0
- marisa-trie==1.2.0
- markdown-it-py==3.0.0
- markupsafe==2.1.5
- matplotlib-inline==0.1.7
- mdurl==0.1.2
- medcat==1.12.0
- mpmath==1.3.0
- multidict==6.0.5
- multiprocess==0.70.16
- murmurhash==1.0.10
- networkx==3.3
- numpy==1.25.2
- nvidia-cublas-cu12==12.1.3.1
- nvidia-cuda-cupti-cu12==12.1.105
- nvidia-cuda-nvrtc-cu12==12.1.105
- nvidia-cuda-runtime-cu12==12.1.105
- nvidia-cudnn-cu12==9.1.0.70
- nvidia-cufft-cu12==11.0.2.54
- nvidia-curand-cu12==10.3.2.106
- nvidia-cusolver-cu12==11.4.5.107
- nvidia-cusparse-cu12==12.1.0.106
- nvidia-nccl-cu12==2.20.5
- nvidia-nvjitlink-cu12==12.6.20
- nvidia-nvtx-cu12==12.1.105
- packaging==24.1
- pandas==2.2.2
- parso==0.8.4
- peft==0.12.0
- pexpect==4.9.0
- preshed==3.0.9
- prompt-toolkit==3.0.47
- psutil==6.0.0
- ptyprocess==0.7.0
- pure-eval==0.2.3
- pyarrow==17.0.0
- pyarrow-hotfix==0.6
- pydantic==1.10.17
- pygments==2.18.0
- python-dateutil==2.9.0.post0
- pytz==2024.1
- pyyaml==6.0.1
- regex==2024.7.24
- requests==2.32.3
- rich==13.7.1
- safetensors==0.4.3
- scikit-learn==1.5.1
- scipy==1.9.3
- shellingham==1.5.4
- six==1.16.0
- smart-open==7.0.4
- spacy==3.7.5
- spacy-legacy==3.0.12
- spacy-loggers==1.0.5
- srsly==2.4.8
- stack-data==0.6.3
- sympy==1.13.1
- thinc==8.2.5
- threadpoolctl==3.5.0
- tokenizers==0.19.1
- torch==2.4.0
- tqdm==4.66.5
- traitlets==5.14.3
- transformers==4.43.3
- triton==3.0.0
- typer==0.12.3
- typing-extensions==4.12.2
- tzdata==2024.1
- urllib3==2.2.2
- wasabi==1.1.3
- wcwidth==0.2.13
- weasel==0.4.1
- widgetsnbextension==4.0.11
- wrapt==1.16.0
- xxhash==3.4.1
- yarl==1.9.4