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Prediction#69

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johan-gson wants to merge 10 commits intoBUStools:predictionBUStools/bustools:predictionfrom johan-gson:predictionjohan-gson/bustools:predictionCopy head branch name to clipboard

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Commits on Apr 22, 2021

• feat: Added collapse from the butterfly branch, but modified to not include multimapped molecules.

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• test: copied the test case for collapse from the butterfly branch and modified it slightly.

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• fix: bug in collapse, the gene ids were incorrect.

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• fix: Fixed a bug in collapse

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Commits on Apr 25, 2021

• feat: Added clusterhist - a command that creates UMI histograms per cluster

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• fix: Fixed an issue with directory creation.

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Commits on May 4, 2021

• feat: count --hist now also writes a CU per cell file. Test added to tc0004.

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• fix: Fixed a bug related to CU per cell; had forgotten to extend the UMI/counts vectors per cell for each encountered cell.

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Commits on May 30, 2021

• fix: some minor things

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• Merge branch 'prediction' of https://github.com/BUStools/bustools into prediction

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