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add minor detail on continuous-time
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gabrieldansereau committed Aug 31, 2020
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Expand Up @@ -36,7 +36,7 @@ \section{Introduction}
\section{Methods}

The model formulation used in this paper is the same as in the original
publication. \citeauthor{hastings1991} used a 14 parameter model to represent the three-species
publication. \citeauthor{hastings1991} used a continuous-time model with 14 parameters to represent the three-species
food chain, with $X$, $Y$, and $Z$ as the numbers of the species at the lowest level of
the food chain, of the species that preys upon $X$, and of the species that preys upon
$Y$, respectively.
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dynamics. Moreover, \citeauthor{hastings1991} mention removing points resulting from
secondary local maxima, but do not provide details on how to identify these points.
Hence, we adopted the following method:
1) we let the system run for time steps between 0 and 10 000, then kept the 1000 last
solutions to the numerical integration for $z$ to eliminate transient behaviour
1) we let the system run for continuous time steps between 0 and 10 000, then kept the last 1000
solutions to the numerical integration to eliminate transient behaviour
(note that these do not occur at time steps between 9000 and 10 000, as the system doesn't
necessarily reach a stable solution, and that the exact time steps vary for all values of $b_1$);
2) we selected the values that were greater than both their preceding and following
2) we selected the values of $z$ that were greater than both their preceding and following
values, which identified local maxima only;
and 3) we only kept values that were greater than a given threshold of the cycle's maximal
amplitude, in order to remove secondary local maxima.
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