form.yml.erb

form:
    - samplesheet
    - run_name
    - af_method 
    - prot_mode 
    - email

cluster: "katana"

attributes:
    samplesheet:
        widget: "text_field"
        pattern: "*.csv^"
        help: |
            Acceptable inputs
            <ul>
                <li><b>Directory containing Fasta files</b> /srv/scratch/z3545907/Experiment</li>
                <li><b>Amino acid sequence</b> MPGAFSQNSSKRRAVLPRSHR</li>
            </ul>
    run_name:
        widget: "text_field"
        label: "Run Name"

    af_method:
        widget: "select"
        label: "Method"
        help: |
            <ul>
                <li><b>AlphaFold2.3</b> High Accuracy, Slower</li>
                <li><b>ESMFold</b> Medium/Low Accuracy, Fastest, No Evolutionary Sequence Calculations</li>
                <li><b>RoseTTAFold-All-Atom</b> High Accuracy, Slower</li>
                <li><b>HelixFold3</b> High Accuracy, Slower</li>
            </ul>
        options:
            - ["Alphafold2", "af2", data-hide-mode: false]
            - ["ESMFold", "esmf", data-hide-mode: true]
            - ["RoseTTAFold-All-Atom", "rfaa", data-hide-mode: true]
            - ["HelixFold3", "hf3", data-hide-mode: true]

    prot_mode:
        widget: "select"
        label: "Mode"
        options:
            - ["Multimer", "multimer"]
            - ["Monomer", "monomer"]

    email:
        widget: "text_field"