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Precompile error on v0.16.19 #960

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slwu89 opened this issue Feb 7, 2025 · 2 comments
Closed

Precompile error on v0.16.19 #960

slwu89 opened this issue Feb 7, 2025 · 2 comments
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@slwu89
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slwu89 commented Feb 7, 2025

Hi all, I'm working in a project with the following deps:

[deps]
CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
Catlab = "134e5e36-593f-5add-ad60-77f754baafbe"
Countries = "5bf49175-83fb-4b6d-82b5-d6ded85154ae"
DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
HTTP = "cd3eb016-35fb-5094-929b-558a96fad6f3"
HiGHS = "87dc4568-4c63-4d18-b0c0-bb2238e4078b"
JSON3 = "0f8b85d8-7281-11e9-16c2-39a750bddbf1"
JuMP = "4076af6c-e467-56ae-b986-b466b2749572"
Oxygen = "df9a0d86-3283-4920-82dc-4555fc0d1d8b"
Reexport = "189a3867-3050-52da-a836-e630ba90ab69"
StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
XLSX = "fdbf4ff8-1666-58a4-91e7-1b58723a45e0"

[compat]
Reexport = "1.2.2"

With the following versions (on Julia 1.11.3):

  [336ed68f] CSV v0.10.15
  [134e5e36] Catlab v0.16.19
  [5bf49175] Countries v0.3.0
  [a93c6f00] DataFrames v1.7.0
  [cd3eb016] HTTP v1.10.15
  [87dc4568] HiGHS v1.13.0
  [0f8b85d8] JSON3 v1.14.1
  [4076af6c] JuMP v1.24.0
  [df9a0d86] Oxygen v1.7.1
  [189a3867] Reexport v1.2.2
  [2913bbd2] StatsBase v0.34.4
  [fdbf4ff8] XLSX v0.10.4

When trying to precompile the project, I get the following error ``ERROR: LoadError: UndefVarError: ThCategory not defined in `Catlab.Theories```. The full error is below. Any ideas on what's going on? If I try to load Catlab in an empty project, it works fine.

ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories`
Stacktrace:
  [1] top-level scope
    @ :0
  [2] #macroexpand#74
    @ ./expr.jl:125 [inlined]
  [3] macroexpand(m::Module, x::Any)
    @ Base ./expr.jl:123
  [4] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any)
    @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235
  [5] include(mod::Module, _path::String)
    @ Base ./Base.jl:557
  [6] include(x::String)
    @ Catlab.Theories ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:6
  [7] top-level scope
    @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37
  [8] include(mod::Module, _path::String)
    @ Base ./Base.jl:557
  [9] include(x::String)
    @ Catlab ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1
 [10] top-level scope
    @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5
 [11] include
    @ ./Base.jl:557 [inlined]
 [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2881
 [13] top-level scope
    @ stdin:6
in expression starting at /Users/wusea/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15
in expression starting at /Users/wusea/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15
in expression starting at /Users/wusea/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1
in expression starting at /Users/wusea/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1
in expression starting at stdin:6
GCSModeling 

Failed to precompile GCSModeling [e93409f1-6d57-48c5-9fa8-1fd3b3493a8b] to "/Users/wusea/.julia/compiled/v1.11/GCSModeling/jl_OrHYxi".
ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories`
Stacktrace:
  [1] top-level scope
    @ :0
  [2] #macroexpand#74
    @ ./expr.jl:125 [inlined]
  [3] macroexpand(m::Module, x::Any)
    @ Base ./expr.jl:123
  [4] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any)
    @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235
  [5] include(mod::Module, _path::String)
    @ Base ./Base.jl:557
  [6] include(x::String)
    @ Catlab.Theories ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:6
  [7] top-level scope
    @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37
  [8] include(mod::Module, _path::String)
    @ Base ./Base.jl:557
  [9] include(x::String)
    @ Catlab ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1
 [10] top-level scope
    @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5
 [11] include
    @ ./Base.jl:557 [inlined]
 [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2881
 [13] top-level scope
    @ stdin:6
in expression starting at /Users/wusea/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15
in expression starting at /Users/wusea/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15
in expression starting at /Users/wusea/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1
in expression starting at /Users/wusea/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1
in expression starting at stdin:6
ERROR: LoadError: Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/Users/wusea/.julia/compiled/v1.11/Catlab/jl_HSVurt".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3174
  [3] (::Base.var"#1110#1111"{Base.PkgId})()
    @ Base ./loading.jl:2579
  [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile ~/.julia/juliaup/julia-1.11.3+0.aarch64.apple.darwin14/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95
  [5] #mkpidlock#6
    @ ~/.julia/juliaup/julia-1.11.3+0.aarch64.apple.darwin14/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile ~/.julia/juliaup/julia-1.11.3+0.aarch64.apple.darwin14/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116
  [7] #invokelatest#2
    @ ./essentials.jl:1057 [inlined]
  [8] invokelatest
    @ ./essentials.jl:1052 [inlined]
  [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3698
 [10] maybe_cachefile_lock
    @ ./loading.jl:3695 [inlined]
 [11] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2565
 [12] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2388
 [13] #invoke_in_world#3
    @ ./essentials.jl:1089 [inlined]
 [14] invoke_in_world
    @ ./essentials.jl:1086 [inlined]
 [15] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2375
 [16] macro expansion
    @ ./loading.jl:2314 [inlined]
 [17] macro expansion
    @ ./lock.jl:273 [inlined]
 [18] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2271
 [19] #invoke_in_world#3
    @ ./essentials.jl:1089 [inlined]
 [20] invoke_in_world
    @ ./essentials.jl:1086 [inlined]
 [21] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2260
 [22] include
    @ ./Base.jl:557 [inlined]
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2881
 [24] top-level scope
    @ stdin:6
in expression starting at /Users/wusea/Desktop/git/dssi-dyve-gcs/src/GCSModeling.jl:1
in expression starting at stdin:6

CatlabDataFramesExt 

Failed to precompile CatlabDataFramesExt [2ba0e0b3-fe25-51a6-b03e-95753f7b4923] to "/Users/wusea/.julia/compiled/v1.11/CatlabDataFramesExt/jl_JZdEmR".
ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories`
Stacktrace:
  [1] top-level scope
    @ :0
  [2] #macroexpand#74
    @ ./expr.jl:125 [inlined]
  [3] macroexpand(m::Module, x::Any)
    @ Base ./expr.jl:123
  [4] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any)
    @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235
  [5] include(mod::Module, _path::String)
    @ Base ./Base.jl:557
  [6] include(x::String)
    @ Catlab.Theories ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:6
  [7] top-level scope
    @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37
  [8] include(mod::Module, _path::String)
    @ Base ./Base.jl:557
  [9] include(x::String)
    @ Catlab ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1
 [10] top-level scope
    @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5
 [11] include
    @ ./Base.jl:557 [inlined]
 [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2881
 [13] top-level scope
    @ stdin:6
in expression starting at /Users/wusea/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15
in expression starting at /Users/wusea/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15
in expression starting at /Users/wusea/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1
in expression starting at /Users/wusea/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1
in expression starting at stdin:6
ERROR: LoadError: Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/Users/wusea/.julia/compiled/v1.11/Catlab/jl_51wok0".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3174
  [3] (::Base.var"#1110#1111"{Base.PkgId})()
    @ Base ./loading.jl:2579
  [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile ~/.julia/juliaup/julia-1.11.3+0.aarch64.apple.darwin14/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95
  [5] #mkpidlock#6
    @ ~/.julia/juliaup/julia-1.11.3+0.aarch64.apple.darwin14/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile ~/.julia/juliaup/julia-1.11.3+0.aarch64.apple.darwin14/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116
  [7] #invokelatest#2
    @ ./essentials.jl:1057 [inlined]
  [8] invokelatest
    @ ./essentials.jl:1052 [inlined]
  [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3698
 [10] maybe_cachefile_lock
    @ ./loading.jl:3695 [inlined]
 [11] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2565
 [12] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2388
 [13] #invoke_in_world#3
    @ ./essentials.jl:1089 [inlined]
 [14] invoke_in_world
    @ ./essentials.jl:1086 [inlined]
 [15] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2375
 [16] macro expansion
    @ ./loading.jl:2314 [inlined]
 [17] macro expansion
    @ ./lock.jl:273 [inlined]
 [18] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2271
 [19] #invoke_in_world#3
    @ ./essentials.jl:1089 [inlined]
 [20] invoke_in_world
    @ ./essentials.jl:1086 [inlined]
 [21] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2260
 [22] include
    @ ./Base.jl:557 [inlined]
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2881
 [24] top-level scope
    @ stdin:6
in expression starting at /Users/wusea/.julia/packages/Catlab/jPXBM/ext/CatlabDataFramesExt.jl:1
in expression starting at stdin:6
@epatters
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epatters commented Feb 7, 2025

Should be resolved by @kris-brown's https://github.com/AlgebraicJulia/GATlab.jl/releases/tag/v0.1.5

@epatters epatters added the bug label Feb 7, 2025
@epatters
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epatters commented Feb 7, 2025

Can confirm that this is resolved by Gatlab v0.1.5.

@epatters epatters closed this as completed Feb 7, 2025
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