From 02cc53f3ddd28d7de6041a3e29e904b69df605b6 Mon Sep 17 00:00:00 2001
From: Nozomi Ichihara <31800566+nozomione@users.noreply.github.com>
Date: Thu, 24 Aug 2023 10:57:26 -0400
Subject: [PATCH] (edit) remove the filter actions from the resources (not
 required) and update their corresponding test

---
 src/resources/compendia/compendia.test.js              | 10 +++-------
 src/resources/compendia/index.js                       |  5 ++---
 src/resources/experiments/experiments.test.js          | 10 +++-------
 src/resources/experiments/index.js                     |  5 ++---
 src/resources/institutions/index.js                    |  4 ++--
 src/resources/institutions/institutions.test.js        |  2 +-
 src/resources/organisms/index.js                       |  5 ++---
 src/resources/organisms/organisms.test.js              | 10 +++-------
 src/resources/originalFiles/index.js                   |  5 ++---
 src/resources/originalFiles/originalFiles.test.js      | 10 +++++-----
 src/resources/platforms/index.js                       |  4 ++--
 src/resources/platforms/platforms.test.js              |  2 +-
 src/resources/processors/index.js                      |  5 ++---
 src/resources/processors/processors.test.js            | 10 +++++-----
 src/resources/qnTargets/index.js                       |  5 ++---
 src/resources/qnTargets/qnTargets.test.js              | 10 +++++-----
 src/resources/samples/index.js                         |  5 ++---
 src/resources/samples/samples.test.js                  | 10 +++++-----
 src/resources/transcriptomeIndices/index.js            |  5 ++---
 .../transcriptomeIndices/transcriptomeIndices.test.js  |  8 ++++----
 20 files changed, 55 insertions(+), 75 deletions(-)

diff --git a/src/resources/compendia/compendia.test.js b/src/resources/compendia/compendia.test.js
index 4063979..17e82d2 100644
--- a/src/resources/compendia/compendia.test.js
+++ b/src/resources/compendia/compendia.test.js
@@ -2,18 +2,14 @@ import Refinebio from 'index'
 
 const api = Refinebio({ verbose: true })
 
-let filterRequest
+let getRequest
 
 beforeAll(async () => {
-  filterRequest = await api.compendia.filter()
-})
-
-test('get all compendia results with filtering', async () => {
-  expect(filterRequest.isOk).toBeTruthy()
+  getRequest = await api.compendia.get()
 })
 
 test('get a compendium result by ID', async () => {
-  const { id } = filterRequest.response.results[0]
+  const { id } = getRequest.response.results[0]
   const getCompendia = await api.compendia.get(id)
 
   expect(getCompendia.isOk).toBeTruthy()
diff --git a/src/resources/compendia/index.js b/src/resources/compendia/index.js
index 9461c18..e29299a 100644
--- a/src/resources/compendia/index.js
+++ b/src/resources/compendia/index.js
@@ -3,12 +3,11 @@ import { getActions } from 'utils/getActions'
 import { availableActions } from 'utils/availableActions'
 
 export const compendia = (config = defaultConfig) => {
-  const { get, filter } = getActions(config, 'compendia')
+  const { get } = getActions(config, 'compendia')
 
   return {
     ...availableActions('compendia'),
-    get,
-    filter
+    get
   }
 }
 
diff --git a/src/resources/experiments/experiments.test.js b/src/resources/experiments/experiments.test.js
index afda42d..42b44a6 100644
--- a/src/resources/experiments/experiments.test.js
+++ b/src/resources/experiments/experiments.test.js
@@ -2,18 +2,14 @@ import Refinebio from 'index'
 
 const api = Refinebio({ verbose: true })
 
-let filterRequest
+let getRequest
 
 beforeAll(async () => {
-  filterRequest = await api.experiments.filter()
-})
-
-test('get detailed information on experiments with filtering', async () => {
-  expect(filterRequest.isOk).toBeTruthy()
+  getRequest = await api.experiments.get()
 })
 
 test('get an experiment by accession code', async () => {
-  const { accession_code: accessionCode } = filterRequest.response.results[0]
+  const { accession_code: accessionCode } = getRequest.response.results[0]
   const getExperiment = await api.experiments.get(accessionCode)
 
   expect(getExperiment.isOk).toBeTruthy()
diff --git a/src/resources/experiments/index.js b/src/resources/experiments/index.js
index 253e64f..cc9f04b 100644
--- a/src/resources/experiments/index.js
+++ b/src/resources/experiments/index.js
@@ -3,12 +3,11 @@ import { getActions } from 'utils/getActions'
 import { availableActions } from 'utils/availableActions'
 
 export const experiments = (config = defaultConfig) => {
-  const { get, filter } = getActions(config, 'experiments', 'accession_code')
+  const { get } = getActions(config, 'experiments', 'accession_code')
 
   return {
     ...availableActions('experiments'),
-    get,
-    filter
+    get
   }
 }
 
diff --git a/src/resources/institutions/index.js b/src/resources/institutions/index.js
index f2f7ca6..9982882 100644
--- a/src/resources/institutions/index.js
+++ b/src/resources/institutions/index.js
@@ -3,11 +3,11 @@ import { getActions } from 'utils/getActions'
 import { availableActions } from 'utils/availableActions'
 
 export const institutions = (config = defaultConfig) => {
-  const { filter } = getActions(config, 'institutions')
+  const { get } = getActions(config, 'institutions')
 
   return {
     ...availableActions('institutions'),
-    filter
+    get
   }
 }
 
diff --git a/src/resources/institutions/institutions.test.js b/src/resources/institutions/institutions.test.js
index 4bfd769..1737d17 100644
--- a/src/resources/institutions/institutions.test.js
+++ b/src/resources/institutions/institutions.test.js
@@ -3,7 +3,7 @@ import Refinebio from 'index'
 const api = Refinebio({ verbose: true })
 
 test('get all the available "institution" information', async () => {
-  const getInstitutions = await api.institutions.filter()
+  const getInstitutions = await api.institutions.get()
 
   expect(getInstitutions.isOk).toBeTruthy()
 })
diff --git a/src/resources/organisms/index.js b/src/resources/organisms/index.js
index 26adbcc..cc87566 100644
--- a/src/resources/organisms/index.js
+++ b/src/resources/organisms/index.js
@@ -3,12 +3,11 @@ import { getActions } from 'utils/getActions'
 import { availableActions } from 'utils/availableActions'
 
 export const organisms = (config = defaultConfig) => {
-  const { get, filter } = getActions(config, 'organisms', 'name')
+  const { get } = getActions(config, 'organisms', 'name')
 
   return {
     ...availableActions('organisms'),
-    get,
-    filter
+    get
   }
 }
 
diff --git a/src/resources/organisms/organisms.test.js b/src/resources/organisms/organisms.test.js
index 7cdd519..0e9a6c7 100644
--- a/src/resources/organisms/organisms.test.js
+++ b/src/resources/organisms/organisms.test.js
@@ -2,18 +2,14 @@ import Refinebio from 'index'
 
 const api = Refinebio({ verbose: true })
 
-let filterRequest
+let getRequest
 
 beforeAll(async () => {
-  filterRequest = await api.organisms.filter()
-})
-
-test('get all available organisms with filtering', async () => {
-  expect(filterRequest.isOk).toBeTruthy()
+  getRequest = await api.organisms.get()
 })
 
 test('get an organism by its name', async () => {
-  const { name } = filterRequest.response.results[0]
+  const { name } = getRequest.response.results[0]
   const getOrganism = await api.organisms.get(name)
 
   expect(getOrganism.isOk).toBeTruthy()
diff --git a/src/resources/originalFiles/index.js b/src/resources/originalFiles/index.js
index 54f3f95..46b0ff9 100644
--- a/src/resources/originalFiles/index.js
+++ b/src/resources/originalFiles/index.js
@@ -3,12 +3,11 @@ import { getActions } from 'utils/getActions'
 import { availableActions } from 'utils/availableActions'
 
 export const originalFiles = (config = defaultConfig) => {
-  const { get, filter } = getActions(config, 'original_files')
+  const { get } = getActions(config, 'original_files')
 
   return {
     ...availableActions('original_files'),
-    get,
-    filter
+    get
   }
 }
 
diff --git a/src/resources/originalFiles/originalFiles.test.js b/src/resources/originalFiles/originalFiles.test.js
index 9b69cdb..ff945d7 100644
--- a/src/resources/originalFiles/originalFiles.test.js
+++ b/src/resources/originalFiles/originalFiles.test.js
@@ -2,18 +2,18 @@ import Refinebio from 'index'
 
 const api = Refinebio({ verbose: true })
 
-let filterRequest
+let getRequest
 
 beforeAll(async () => {
-  filterRequest = await api.originalFiles.filter()
+  getRequest = await api.originalFiles.get()
 })
 
-test('get original files with filtering', async () => {
-  expect(filterRequest.isOk).toBeTruthy()
+test('get original files', async () => {
+  expect(getRequest.isOk).toBeTruthy()
 })
 
 test('get an original file by ID', async () => {
-  const { id } = filterRequest.response.results[0]
+  const { id } = getRequest.response.results[0]
   const getOriginalFile = await api.originalFiles.get(id)
 
   expect(getOriginalFile.isOk).toBeTruthy()
diff --git a/src/resources/platforms/index.js b/src/resources/platforms/index.js
index b38727a..b25070e 100644
--- a/src/resources/platforms/index.js
+++ b/src/resources/platforms/index.js
@@ -3,11 +3,11 @@ import { getActions } from 'utils/getActions'
 import { availableActions } from 'utils/availableActions'
 
 export const platforms = (config = defaultConfig) => {
-  const { filter } = getActions(config, 'platforms')
+  const { get } = getActions(config, 'platforms')
 
   return {
     ...availableActions('platforms'),
-    filter
+    get
   }
 }
 
diff --git a/src/resources/platforms/platforms.test.js b/src/resources/platforms/platforms.test.js
index ef998eb..8d71386 100644
--- a/src/resources/platforms/platforms.test.js
+++ b/src/resources/platforms/platforms.test.js
@@ -3,7 +3,7 @@ import Refinebio from 'index'
 const api = Refinebio({ verbose: true })
 
 test('get all the available "platforms" information', async () => {
-  const getPlatforms = await api.platforms.filter()
+  const getPlatforms = await api.platforms.get()
 
   expect(getPlatforms.isOk).toBeTruthy()
 })
diff --git a/src/resources/processors/index.js b/src/resources/processors/index.js
index ad1f85c..e75e940 100644
--- a/src/resources/processors/index.js
+++ b/src/resources/processors/index.js
@@ -3,12 +3,11 @@ import { getActions } from 'utils/getActions'
 import { availableActions } from 'utils/availableActions'
 
 export const processors = (config = defaultConfig) => {
-  const { get, filter } = getActions(config, 'processors')
+  const { get } = getActions(config, 'processors')
 
   return {
     ...availableActions('processors'),
-    get,
-    filter
+    get
   }
 }
 
diff --git a/src/resources/processors/processors.test.js b/src/resources/processors/processors.test.js
index 9889598..d567451 100644
--- a/src/resources/processors/processors.test.js
+++ b/src/resources/processors/processors.test.js
@@ -2,18 +2,18 @@ import Refinebio from 'index'
 
 const api = Refinebio({ verbose: true })
 
-let filterRequest
+let getRequest
 
 beforeAll(async () => {
-  filterRequest = await api.processors.filter()
+  getRequest = await api.processors.get()
 })
 
-test('get all available processors with filtering', async () => {
-  expect(filterRequest.isOk).toBeTruthy()
+test('get all available processors', async () => {
+  expect(getRequest.isOk).toBeTruthy()
 })
 
 test('get a processor by its ID', async () => {
-  const { id } = filterRequest.response.results[0]
+  const { id } = getRequest.response.results[0]
   const getProcessor = await api.processors.get(id)
 
   expect(getProcessor.isOk).toBeTruthy()
diff --git a/src/resources/qnTargets/index.js b/src/resources/qnTargets/index.js
index da12435..6f0655d 100644
--- a/src/resources/qnTargets/index.js
+++ b/src/resources/qnTargets/index.js
@@ -3,12 +3,11 @@ import { getActions } from 'utils/getActions'
 import { availableActions } from 'utils/availableActions'
 
 export const qnTargets = (config = defaultConfig) => {
-  const { get, filter } = getActions(config, 'qn_targets', 'organism_name')
+  const { get } = getActions(config, 'qn_targets', 'organism_name')
 
   return {
     ...availableActions('qn_targets'),
-    get,
-    filter
+    get
   }
 }
 
diff --git a/src/resources/qnTargets/qnTargets.test.js b/src/resources/qnTargets/qnTargets.test.js
index c183e83..4348ad0 100644
--- a/src/resources/qnTargets/qnTargets.test.js
+++ b/src/resources/qnTargets/qnTargets.test.js
@@ -2,18 +2,18 @@ import Refinebio from 'index'
 
 const api = Refinebio({ verbose: true })
 
-let filterRequest
+let getRequest
 
 beforeAll(async () => {
-  filterRequest = await api.qnTargets.filter()
+  getRequest = await api.qnTargets.get()
 })
 
-test('get all organisms with available QN Targets with filtering', async () => {
-  expect(filterRequest.isOk).toBeTruthy()
+test('get all organisms with available QN Targets', async () => {
+  expect(getRequest.isOk).toBeTruthy()
 })
 
 test('get a Quantile Normalization file for an organism', async () => {
-  const { name } = filterRequest.response[0]
+  const { name } = getRequest.response[0]
   const getQnTarget = await api.qnTargets.get(name)
 
   expect(getQnTarget.isOk).toBeTruthy()
diff --git a/src/resources/samples/index.js b/src/resources/samples/index.js
index 30aa2d1..9f9083e 100644
--- a/src/resources/samples/index.js
+++ b/src/resources/samples/index.js
@@ -3,12 +3,11 @@ import { getActions } from 'utils/getActions'
 import { availableActions } from 'utils/availableActions'
 
 export const samples = (config = defaultConfig) => {
-  const { get, filter } = getActions(config, 'samples', 'accession_code')
+  const { get } = getActions(config, 'samples', 'accession_code')
 
   return {
     ...availableActions('samples'),
-    get,
-    filter
+    get
   }
 }
 
diff --git a/src/resources/samples/samples.test.js b/src/resources/samples/samples.test.js
index da28f40..be31810 100644
--- a/src/resources/samples/samples.test.js
+++ b/src/resources/samples/samples.test.js
@@ -2,18 +2,18 @@ import Refinebio from 'index'
 
 const api = Refinebio({ verbose: true })
 
-let filterRequest
+let getRequest
 
 beforeAll(async () => {
-  filterRequest = await api.samples.filter()
+  getRequest = await api.samples.get()
 })
 
-test('get detailed information on samples with filtering', async () => {
-  expect(filterRequest.isOk).toBeTruthy()
+test('get detailed information on samples', async () => {
+  expect(getRequest.isOk).toBeTruthy()
 })
 
 test('get sample details by its accession code', async () => {
-  const { accession_code: accessionCode } = filterRequest.response.results[0]
+  const { accession_code: accessionCode } = getRequest.response.results[0]
   const getSample = await api.samples.get(accessionCode)
 
   expect(getSample.isOk).toBeTruthy()
diff --git a/src/resources/transcriptomeIndices/index.js b/src/resources/transcriptomeIndices/index.js
index 42cbe87..4e39c29 100644
--- a/src/resources/transcriptomeIndices/index.js
+++ b/src/resources/transcriptomeIndices/index.js
@@ -3,12 +3,11 @@ import { getActions } from 'utils/getActions'
 import { availableActions } from 'utils/availableActions'
 
 export const transcriptomeIndices = (config = defaultConfig) => {
-  const { get, filter } = getActions(config, 'transcriptome_indices')
+  const { get } = getActions(config, 'transcriptome_indices')
 
   return {
     ...availableActions('transcriptome_indices'),
-    get,
-    filter
+    get
   }
 }
 
diff --git a/src/resources/transcriptomeIndices/transcriptomeIndices.test.js b/src/resources/transcriptomeIndices/transcriptomeIndices.test.js
index 3c51ed6..c42d852 100644
--- a/src/resources/transcriptomeIndices/transcriptomeIndices.test.js
+++ b/src/resources/transcriptomeIndices/transcriptomeIndices.test.js
@@ -2,18 +2,18 @@ import Refinebio from 'index'
 
 const api = Refinebio({ verbose: true })
 
-let filterRequest
+let getRequest
 
 beforeAll(async () => {
-  filterRequest = await api.transcriptomeIndices.filter()
+  getRequest = await api.transcriptomeIndices.get()
 })
 
 test('get all transcriptome Indices with filtering', async () => {
-  expect(filterRequest.isOk).toBeTruthy()
+  expect(getRequest.isOk).toBeTruthy()
 })
 
 test('get a S3 url associated with the transcriptome index', async () => {
-  const { id } = filterRequest.response.results[0]
+  const { id } = getRequest.response.results[0]
   const getS3Url = await api.transcriptomeIndices.get(id)
 
   expect(getS3Url.isOk).toBeTruthy()