From 013fd7ccbe1f5769fc779042a947ce4245032c09 Mon Sep 17 00:00:00 2001 From: Stephanie Spielman Date: Tue, 14 Jan 2025 14:06:32 -0500 Subject: [PATCH] update a comment --- analyses/hello-clusters/02_compare-clustering-parameters.Rmd | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/analyses/hello-clusters/02_compare-clustering-parameters.Rmd b/analyses/hello-clusters/02_compare-clustering-parameters.Rmd index 457ca45b7..3bfc1c0a4 100644 --- a/analyses/hello-clusters/02_compare-clustering-parameters.Rmd +++ b/analyses/hello-clusters/02_compare-clustering-parameters.Rmd @@ -221,8 +221,8 @@ cell_metric_list <- cluster_results_list |> # calculate silhouette width silhouette_df <- rOpenScPCA::calculate_silhouette(pca_matrix, cluster_df) - # calculate neighbhorhood purity - purity_df <- rOpenScPCA::calculate_purity(pca_matrix, silhouette_df) + # calculate neighbhorhood purity, starting from silhouette_df + OpenScPCA::calculate_purity(pca_matrix, silhouette_df) } )