Skip to content
This repository has been archived by the owner on Jun 21, 2023. It is now read-only.

adding annoFuse for kinase status #816

Merged
merged 10 commits into from
Oct 20, 2020
Merged

adding annoFuse for kinase status #816

Changes from all commits
Commits
Show all changes
10 commits
Select commit Hold shift + click to select a range
6f2ac2f
adding annoFuse for kinase status
kgaonkar6 Oct 19, 2020
51cd16a
Update Dockerfile
kgaonkar6 Oct 19, 2020
4563305
Update Dockerfile
kgaonkar6 Oct 19, 2020
467b7ba
Update Dockerfile
kgaonkar6 Oct 19, 2020
30bdf78
Update Dockerfile
kgaonkar6 Oct 19, 2020
f17e92b
Update Dockerfile
kgaonkar6 Oct 19, 2020
ce93c93
Update Dockerfile
kgaonkar6 Oct 19, 2020
6e4b623
Update Dockerfile
kgaonkar6 Oct 19, 2020
118dfb6
Update Dockerfile
kgaonkar6 Oct 19, 2020
9fc1c71
Update Dockerfile
kgaonkar6 Oct 19, 2020
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
7 changes: 7 additions & 0 deletions Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -332,6 +332,13 @@ RUN R -e "remotes::install_github('stan-dev/rstantools', ref = 'd43bf9fb6120d40a
# Build arguments are according to the sigfit instructions
RUN R -e "remotes::install_github('kgori/sigfit', ref = '209776ee1d2193ad4b682b2e2472f848bd7c67a6', build_vignettes = TRUE, build_opts = c('--no-resave-data', '--no-manual'), dependencies = TRUE)"

# Package for kinase domain retention for fusions
RUN ./install_bioc.r \
EnsDb.Hsapiens.v86 \
ensembldb

RUN R -e "remotes::install_github('d3b-center/annoFuse',ref = 'c6a2111b5949ca2aae3853f7f34de3d0db4ffa33', dependencies = TRUE)"


#### Please install your dependencies immediately above this comment.
#### Add a comment to indicate what analysis it is required for
Expand Down