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v13 data release #444
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v13 data release #444
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added 2 commits
January 16, 2020 12:51
add WXS.hg38.lancet.300bp_padded.bed file description
cgreene
reviewed
Jan 16, 2020
update tcga workflow links, mendqc link
cgreene
reviewed
Jan 16, 2020
add ticket number from @cgreene suggestion Co-Authored-By: Casey Greene <cgreene@users.noreply.github.com>
update lancet padding to 400 for WXS, 100 from input file + 300 for padding
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@jharenza should the release in the data-files-description.md be v13? https://github.com/AlexsLemonade/OpenPBTA-analysis/pull/444/files#diff-0468bf9add309a2a34494766546a847aL18 |
update release v13
yes, correct - updated |
added 2 commits
January 16, 2020 15:55
add mendQC file link
move consensus CN file description per @jaclyn-taroni suggestion
added 2 commits
January 16, 2020 16:55
-add to release chain: -cnv_consensus.tsv -intersect_exon_lancet_strelka_mutect_WGS.bed -intersect_exon_WXS.bed -intersect_strelka_mutect_WGS.bed fix filename -pbta-mend-qc-results.tar.gz -data-files-descriptions.md
add back gistic file to release notes
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@jaclyn-taroni the files are uploaded and md5sum updated. i am testing the download now, but should be ready for CI work. |
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Data download successful 👍 |
jaclyn-taroni
approved these changes
Jan 17, 2020
I'll merge once CI finishes
This was referenced Jan 18, 2020
This was referenced Jan 18, 2020
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Purpose/implementation Section
What scientific question is your analysis addressing?
V13 data release
What was your approach?
NA
What GitHub issue does your pull request address?
#373
Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.
Which areas should receive a particularly close look?
This is not ready yet (files will be uploaded to S3 after 2PM), but wanted to push the documents through for a look to determine if anything has to change since now we are adding both
release-notes.mdanddata-file-descriptions.mdin two places, within the release and in thedoc/folder. Does everything seem appropriately addressed?Is there anything that you want to discuss further?
@cansavvy can you take a look at the
data-file-descriptions.mdfor the intervals used for TMB?Are analysis files adequately described?
@jaclyn-taroni I added STAR output files to the gene expression section, but MendQC to a new QC section - does this sound reasonable?
Documentation Checklist
Data Release Checklist