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Planned Analysis: MultiPLIER LVs + Survival & Variant Analysis #4

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cgreene opened this issue Jul 11, 2019 · 3 comments
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Planned Analysis: MultiPLIER LVs + Survival & Variant Analysis #4

cgreene opened this issue Jul 11, 2019 · 3 comments
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in progress Someone is working on this issue, but feel free to propose an alternative approach! transcriptomic Related to or requires transcriptomic data

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@cgreene
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cgreene commented Jul 11, 2019

We plan to produce a MultiPLIER LV matrix. We then plan to use that analysis to identify LVs associated with survival as well as those associated with samples that contain alterations in selected genes. This issue is for more fully fleshing out the analysis.
@jaclyn-taroni
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I will get started on the MultiPLIER LV matrix this week in this Docker container to start. First steps include filtering to remove low variance LVs.

@jaclyn-taroni jaclyn-taroni added the in progress Someone is working on this issue, but feel free to propose an alternative approach! label Aug 5, 2019
@jaclyn-taroni jaclyn-taroni added the transcriptomic Related to or requires transcriptomic data label Oct 26, 2019
@jaclyn-taroni
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This should wait on #198

@cgreene cgreene mentioned this issue Dec 23, 2019
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@jaclyn-taroni
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Closing all planned analysis tickets in favor of opening new proposed analysis tickets as needed.

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