Planned data release: V13

[jharenza]

What data file(s) does this issue pertain to?

For V13, on deck:

• Update RNA-Seq stranded files, per Inconsistant table in pbta-gene-counts-rsem-expected_count.stranded.rds #369, Unknown sample BS_4X8PQ5G6 #371, Inconsistent gene ordering in pbta-gene-expression-rsem-fpkm.stranded.rds #370
• Add bed files per Updated Data Files: Add intersection genome BED files used for TMB to v13 data release #351
• Add MendQC data files per Possible to run docker in cavatica on openPBTA read data?  #341
• Add Consensus CNVs per Proposed Analysis: Copy number consensus calls #128
• remove BGI-China data per Updates on selection strategy, and v12 added "stranded" files. #374 (comment below)
• potentially include fusion files from Proposed Analysis: Fusion files specifically for consumption by molecular subtyping analyses #398
• address Propagate medulloblastoma molecular_subtypes labels to all biospecimens of the same sample #379

What release are you using?

V12

Put your question or report your issue here.

Any additional files to add?

[jaclyn-taroni]

@jharenza can we plan to remove the poly-A stranded samples that were added as part of v12? Related to @jashapiro's results here: #374 I think including them is likely to confuse folks working with the data.

[jharenza]

yes, was going to ask if we should do so

[jharenza]

We will also be adding merged MAFs and a clinical file for #257 with this release.

[jaclyn-taroni]

Closed via #444