Updated analysis: figures/mapping-histology-labels.Rmd

[kgaonkar6]

What analysis module should be updated and why?

figures/mapping-histology-labels.Rmd

What changes need to be made? Please provide enough detail for another participant to make the update.

• Include cancer_group in histology_variables
• Add cancer_group as display_group and
• Remove "Benign tumor","Dysplasia/Gliosis","Other" and Normals from display_group assignment
• Remove display_groups with <5 counts while assigning hex_codes for display

What input data should be used? Which data were used in the version being updated?

v20 pbta-histologies.tsv

When do you expect the revised analysis will be completed?

1/2day

Who will complete the updated analysis?

@kgaonkar6

[kgaonkar6]

I believe this can be closed with #1142, the filtering for <5 will be done within the analysis module when necessary.

Please open if required.