From c79de3afe4697a77d99aba083bd7ee8b62af4ac7 Mon Sep 17 00:00:00 2001 From: Komal Rathi Date: Fri, 3 Jan 2020 11:47:24 -0500 Subject: [PATCH] Update analyses/immune-deconv/run-immune-deconv.sh Co-Authored-By: Jaclyn Taroni --- analyses/immune-deconv/run-immune-deconv.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/analyses/immune-deconv/run-immune-deconv.sh b/analyses/immune-deconv/run-immune-deconv.sh index c236b90c53..e2ac79854d 100644 --- a/analyses/immune-deconv/run-immune-deconv.sh +++ b/analyses/immune-deconv/run-immune-deconv.sh @@ -18,7 +18,7 @@ cd "$script_directory" || exit # create results directory if it doesn't already exist mkdir -p results - +mkdir -p plots # generate deconvolution output for poly-A and stranded datasets using xCell and the second specified method # we will use CIBERSORT for the paper but because the dependent scripts are not publicly accesible, we will use the next best method i.e. MCP-counter as default for testing purpose # Reference for benchmarking between xCell, CIBERSORT and MCP-counter: PMID: 31641033