diff --git a/analyses/fusion_filtering/04-project-specific-filtering.Rmd b/analyses/fusion_filtering/04-project-specific-filtering.Rmd index 7c8621696f..475d1a9240 100644 --- a/analyses/fusion_filtering/04-project-specific-filtering.Rmd +++ b/analyses/fusion_filtering/04-project-specific-filtering.Rmd @@ -12,11 +12,11 @@ params: input: string dataStranded: label: "Input filtered fusion dataframe" - value: scratch/standardFusionStrandedExp_QC_expression_GTExComparison_annotated.RDS + value: scratch/standardFusionStrandedExp_QC_expression_filtered_annotated.RDS input: file dataPolya: label: "Input filtered fusion dataframe" - value: scratch/standardFusionPolyaExp_QC_expression_GTExComparison_annotated.RDS + value: scratch/standardFusionPolyaExp_QC_expression_filtered_annotated.RDS input: file numCaller: label: "Least Number of callers to have called fusion" @@ -111,7 +111,6 @@ table(fusion_calls$Caller) # aggregate caller fusion_caller.summary <- fusion_calls %>% - dplyr::filter(Fusion_Type != "other") %>% dplyr::select(Sample,FusionName,Caller,Fusion_Type) %>% group_by(FusionName, Sample ,Fusion_Type) %>% unique() %>% @@ -122,17 +121,20 @@ fusion_caller.summary <- fusion_calls %>% fusion_calls <- fusion_calls %>% # remove local rearrangement/adjacent genes dplyr::filter(!grepl("LOCAL_REARRANGEMENT|LOCAL_INVERSION",annots)) - + #to add aggregated caller from fusion_caller.summary fusion_calls<-fusion_calls %>% - dplyr::filter(Fusion_Type != "other") %>% dplyr::select(-Caller,-annots) %>% + dplyr::select(-Caller,-annots) %>% left_join(fusion_caller.summary,by=(c("Sample","FusionName","Fusion_Type"))) %>% dplyr::select(-JunctionReadCount,-SpanningFragCount,-Confidence,-LeftBreakpoint,-RightBreakpoint) %>% unique() #merge with histology file fusion_calls<-merge(fusion_calls,clinical,by.x="Sample",by.y="Kids_First_Biospecimen_ID") - +# filter for putative driver genes and mutifused genes per sample +putative_driver_annotated_fusions <- fusion_calls %>% + dplyr::filter(!is.na(Gene1A_anno) | !is.na(Gene1B_anno) | !is.na(Gene2A_anno) | !is.na(Gene2B_anno)) %>% + unique() @@ -141,7 +143,9 @@ fusion_calls<-merge(fusion_calls,clinical,by.x="Sample",by.y="Kids_First_Biospec ```{r} -# Gene fusion should be in-frame +# Gene fusion should be in-frame/frameshift +fusion_calls<-fusion_calls %>% + dplyr::filter(Fusion_Type != "other") # AND # # 1. Called by at least n callers @@ -237,15 +241,10 @@ QCGeneFiltered_recFusionUniq<-QCGeneFiltered_recFusion %>% ```{r} - -# filter for putative driver genes and mutifused genes per sample -putative_driver_annotated_fusions <- fusion_calls %>% - dplyr::filter(!is.na(Gene1A_anno) | !is.na(Gene1B_anno) | !is.na(Gene2A_anno) | !is.na(Gene2B_anno)) %>% - unique() # merge putative annotated oncogenic and scavenged back non-oncogenic annotated, recurrent fusions putative_driver_fusions<-rbind(QCGeneFiltered_recFusionUniq,putative_driver_annotated_fusions) %>% - unique() %>% select (-broad_histology) %>% + unique() %>% dplyr::select (-broad_histology) %>% as.data.frame() write.table(putative_driver_fusions,file.path(outputfolder,"pbta-fusion-putative-oncogenic.tsv"),sep="\t",quote=FALSE,row.names = FALSE) diff --git a/analyses/fusion_filtering/README.md b/analyses/fusion_filtering/README.md index 062e3448e8..0d2db5c8dd 100644 --- a/analyses/fusion_filtering/README.md +++ b/analyses/fusion_filtering/README.md @@ -20,7 +20,7 @@ We also gather counts for recurrent fusions and fused genes found in more than 3 * pbta-gene-expression-rsem-fpkm.stranded.rds : aggregated stranded fpm data #### Inputs used as reference -* genelistreference.txt : known kinases, oncogenes, tumor suppressors, curated transcription factors [@doi:10.1016/j.cell.2018.01.029], COSMIC Cancer Gene Census list[https://cancer.sanger.ac.uk/census] . MYBL1 [@doi:10.1073/pnas.1300252110], SNCAIP [@doi:10.1038/nature11327], FOXR2 [@doi:10.1016/j.cell.2016.01.015], TTYH1 [@doi:10.1038/ng.2849], and TERT [@doi:10.1038/ng.3438; @doi:10.1002/gcc.22110; @doi:10.1016/j.canlet.2014.11.057; @doi:10.1007/s11910-017-0722-5] were added to the oncogene list and BCOR [@doi:10.1016/j.cell.2016.01.015] and QKI [@doi:10.1038/ng.3500] were added to the tumor suppressor gene list based on pediatric cancer literature review. +* genelistreference.txt : known kinases, oncogenes, tumor suppressors, curated transcription factors [@doi:10.1016/j.cell.2018.01.029], COSMIC Cancer Gene Census list[https://cancer.sanger.ac.uk/census] . MYBL1 [@doi:10.1073/pnas.1300252110], SNCAIP [@doi:10.1038/nature11327], FOXR2 [@doi:10.1016/j.cell.2016.01.015], TTYH1 [@doi:10.1038/ng.2849], and TERT [@doi:10.1038/ng.3438; @doi:10.1002/gcc.22110; @doi:10.1016/j.canlet.2014.11.057; @doi:10.1007/s11910-017-0722-5] were added to the oncogene list and BCOR [@doi:10.1016/j.cell.2016.01.015] and QKI [@doi:10.1038/ng.3500] were added to the tumor suppressor gene list based on pediatric cancer literature review. IGH-@,IGH@ , IGL-@ and IGL@ were also added to reference list as oncogenic genes because StarFusion output contains these gene symbols instead of IGL/IGH as per public databases. * fusionreference.txt : known TCGA fusions * Brain_FPKM_hg38_matrix.txt.zip : GTex brain samples FPKM data The code to generate genelistreference.txt and fusionreference.txt is available here: https://gist.github.com/kgaonkar6/02b3fbcfeeddfa282a1cdf4803704794#file-format_reference_gene_list-r diff --git a/analyses/fusion_filtering/references/genelistreference.txt b/analyses/fusion_filtering/references/genelistreference.txt index 5ff050f41b..049f84ead5 100644 --- a/analyses/fusion_filtering/references/genelistreference.txt +++ b/analyses/fusion_filtering/references/genelistreference.txt @@ -6752,3 +6752,7 @@ "6751" "GAK" "PfamKinase" "Kinase" "6752" "PIK3C2B" "PfamKinase" "Kinase" "6753" "HUNK" "PfamKinase" "Kinase" +"6754" "IGH@" "addedToallOnco_Feb2017.tsv" "Oncogene" +"6755" "IGH-@" "addedToallOnco_Feb2017.tsv" "Oncogene" +"6756" "IGL@" "addedToallOnco_Feb2017.tsv" "Oncogene" +"6757" "IGL-@" "addedToallOnco_Feb2017.tsv" "Oncogene" diff --git a/analyses/fusion_filtering/results/FilteredFusion.tsv b/analyses/fusion_filtering/results/FilteredFusion.tsv index 238c927c8e..8ed77a7abd 100644 --- a/analyses/fusion_filtering/results/FilteredFusion.tsv +++ b/analyses/fusion_filtering/results/FilteredFusion.tsv @@ -1,16875 +1,18354 @@ -FusionName Sample zscore_Gene1A zscore_Gene1B zscore_Gene2A zscore_Gene2B note_expression_Gene1A note_expression_Gene1B note_expression_Gene2A note_expression_Gene2B LeftBreakpoint RightBreakpoint Caller Fusion_Type JunctionReadCount SpanningFragCount Confidence annots Gene1A Gene2A Gene1B Gene2B Gene1A_anno Gene1B_anno Gene2A_anno Gene2B_anno Fusion_anno -5_8S_rRNA(721981)/AC116618.1(630526)--WRAP73 BS_RCCN63K6 -0.0294627825494395 -0.0933181169601952 NA NA no change no change NA NA 22:11971940 1:3638822 ARRIBA other 3 0 medium [],translocation 5_8S_rRNA AC116618.1 WRAP73 NA NA NA NA NA NA -AAMDC--PRDM11 BS_CZ3NA7KV -1.58498672030824 1.62135370461607 NA NA no change no change NA NA 11:77842628 11:45141997 ARRIBA frameshift 8 1 high [INTRACHROMOSOMAL[chr11:32.59Mb]],inversion/3'-3' AAMDC NA PRDM11 NA NA TumorSuppressorGene NA NA NA -AASS--AC091893.1(24499)/BTG4P1(12571) BS_6JHXXVR7 2.58895379168952 NA NA NA differentially expressed NA NA NA 7:122126375 5:24774271 ARRIBA frameshift 134 17 high [],translocation AASS NA AC091893.1 BTG4P1 NA NA NA NA NA -AASS--BTG4P1 BS_6JHXXVR7 2.58895379168952 NA NA NA differentially expressed NA NA NA 7:122126375 5:24786870 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation AASS NA BTG4P1 NA NA NA NA NA NA -AASS--BTG4P1(16154)/SNORD29(8303) BS_6JHXXVR7 2.58895379168952 NA NA NA differentially expressed NA NA NA 7:122126375 5:24803178 ARRIBA frameshift 12 4 high [],translocation AASS NA BTG4P1 SNORD29 NA NA NA NA NA -AASS--YTHDC2(324791)/AC106789.1(135930) BS_6JHXXVR7 2.58895379168952 0.332208892220991 NA NA differentially expressed no change NA NA 7:122126375 5:113920076 ARRIBA frameshift 8 0 high [],translocation AASS NA YTHDC2 AC106789.1 NA NA NA NA NA -ABCA9--ABCA9(1072)/ABCA6(16566) BS_6JHXXVR7 8.56366462855168 8.56366462855168 NA 6.89097264364157 differentially expressed differentially expressed NA differentially expressed 17:68993016 17:69062136 ARRIBA frameshift 1 0 low [],duplication ABCA9 NA ABCA9 ABCA6 NA NA NA NA NA -ABCB7--ABCB7(22051)/BUD31P2(22708) BS_TNRHHYNC 0.820880109147533 0.820880109147533 NA 0.299176332437366 no change no change NA no change X:75098942 X:75178783 ARRIBA frameshift 2 1 high [],duplication ABCB7 NA ABCB7 BUD31P2 NA NA NA NA NA -ABCC4--CLDN10-AS1 BS_PN2CE34A 3.69120650231892 20.2460808344958 NA NA differentially expressed differentially expressed NA NA 13:95301241 13:95497125 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr13:0.18Mb]],duplication ABCC4 NA CLDN10-AS1 NA NA NA NA NA NA -ABCC5--CADM2 BS_FAQQ0GCQ -1.31610860586718 2.10380211421911 NA NA no change differentially expressed NA NA 3:184014264 3:85323893 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr3:97.85Mb]],deletion/5'-5' ABCC5 NA CADM2 NA NA TumorSuppressorGene NA NA NA -ABCC8--PTH(111190)/HMGN2P36(2992) BS_B1C6GZ84 -2.17747024545642 -0.125014002859089 NA -0.0592010336834036 differentially expressed no change NA no change 11:17427867 11:13607371 ARRIBA frameshift 2 1 high [],deletion ABCC8 NA PTH HMGN2P36 NA Oncogene NA NA NA -ABCC9--ABCC9 BS_3X9WMZGJ 2.70890297110969 2.70890297110969 NA NA differentially expressed differentially expressed NA NA 12:21815763 12:21894174 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing ABCC9 NA ABCC9 NA NA NA NA NA NA -ABCC9--ABCC9 BS_7BTZQKYY 6.88613926028842 6.88613926028842 NA NA differentially expressed differentially expressed NA NA 12:21815763 12:21894174 ARRIBA frameshift 23 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing ABCC9 NA ABCC9 NA NA NA NA NA NA -ABCC9--ABCC9 BS_X67GTEM6 5.72759550712903 5.72759550712903 NA NA differentially expressed differentially expressed NA NA 12:21815763 12:21894174 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing ABCC9 NA ABCC9 NA NA NA NA NA NA -ABCD4--ZNF521(67999)/RN7SL97P(398045) BS_QWTE1CWR -0.391502078639608 0.346252993600225 NA -0.0294627825494395 no change no change NA no change 14:74295148 18:25420189 ARRIBA frameshift 2 0 medium [],translocation ABCD4 NA ZNF521 RN7SL97P NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -ABHD13--MYO16 BS_23QW0BBA 13.8877476270207 17.0127688625013 NA NA differentially expressed differentially expressed NA NA 13:108218659 13:108665886 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr13:0.36Mb]],deletion ABHD13 NA MYO16 NA NA NA NA NA NA -ABHD13--MYO16 BS_23QW0BBA 13.8877476270207 17.0127688625013 NA NA differentially expressed differentially expressed NA NA 13:108218659 13:108855443 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr13:0.36Mb]],deletion ABHD13 NA MYO16 NA NA NA NA NA NA -ABHD13--MYO16 BS_23QW0BBA 13.8877476270207 17.0127688625013 NA NA differentially expressed differentially expressed NA NA 13:108218659 13:108992376 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr13:0.36Mb]],deletion ABHD13 NA MYO16 NA NA NA NA NA NA -ABHD8--GABRB1 BS_TGS109T3 0.296259202853674 2.53373825143893 NA NA no change differentially expressed NA NA 19:17300856 4:47320127 ARRIBA in-frame 27 2 high [INTERCHROMOSOMAL[chr19--chr4]],translocation ABHD8 NA GABRB1 NA NA NA NA NA NA -ABI1--SLX4IP BS_W3R88RFP 0.361508138749733 2.7036781641044 NA NA no change differentially expressed NA NA 10:26823192 20:10603326 ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr10--chr20]],translocation/5'-5' ABI1 NA SLX4IP NA CosmicCensus, Oncogene NA NA NA NA -ABI3BP--ABI3BP BS_61E80SD6 1.17716332171959 1.17716332171959 NA NA no change no change NA NA 3:100846372 3:100926481 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.24Mb]],duplication/non-canonical_splicing ABI3BP NA ABI3BP NA NA NA NA NA NA -ABL1--PTTG1 BS_YEQVW4ND 0.952659781428832 0.595917469186222 NA NA no change no change NA NA 9:130855096 5:160422302 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr9--chr5]],translocation ABL1 NA PTTG1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA -ABLIM2--ATP8A1 BS_B1C6GZ84 -0.714350748208722 -0.811606858327841 NA NA no change no change NA NA 4:7983264 4:42499335 ARRIBA frameshift 6 2 high [INTRACHROMOSOMAL[chr4:34.25Mb]],inversion/5'-5' ABLIM2 NA ATP8A1 NA NA NA NA NA NA -ABR--AC134669.2 BS_6JHXXVR7 -1.26404565805495 NA NA NA no change NA NA NA 17:1083520 17:31305630 ARRIBA frameshift 14 4 high [INTRACHROMOSOMAL[chr17:30.08Mb]],duplication ABR NA AC134669.2 NA Oncogene NA NA NA NA -ABR--AC134669.2 BS_6JHXXVR7 -1.26404565805495 NA NA NA no change NA NA NA 17:1083520 17:31307959 ARRIBA frameshift 1 4 high [INTRACHROMOSOMAL[chr17:30.08Mb]],duplication ABR NA AC134669.2 NA Oncogene NA NA NA NA -ABR--AC134669.2 BS_6JHXXVR7 -1.26404565805495 NA NA NA no change NA NA NA 17:1091665 17:31305630 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr17:30.08Mb]],duplication ABR NA AC134669.2 NA Oncogene NA NA NA NA -ABR--AC134669.2 BS_KE56MMY0 -1.29086608460143 NA NA NA no change NA NA NA 17:1083520 17:31305630 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr17:30.08Mb]],duplication ABR NA AC134669.2 NA Oncogene NA NA NA NA -ABR--ANKS1B BS_ZJZXDPTP 0.218408197302932 -1.72187031122531 NA NA no change no change NA NA 17:1125183 12:98832136 ARRIBA in-frame 7 0 high [INTERCHROMOSOMAL[chr17--chr12]],translocation ABR NA ANKS1B NA Oncogene NA NA NA NA -ABR--EVI2B BS_6JHXXVR7 -1.26404565805495 1.99229127384418 NA NA no change no change NA NA 17:1083520 17:31305630 ARRIBA frameshift 14 4 high [INTRACHROMOSOMAL[chr17:30.07Mb]],duplication ABR NA EVI2B NA Oncogene NA NA NA NA -ABR--EVI2B BS_6JHXXVR7 -1.26404565805495 1.99229127384418 NA NA no change no change NA NA 17:1083520 17:31307959 ARRIBA frameshift 1 4 high [INTRACHROMOSOMAL[chr17:30.07Mb]],duplication ABR NA EVI2B NA Oncogene NA NA NA NA -ABR--EVI2B BS_6JHXXVR7 -1.26404565805495 1.99229127384418 NA NA no change no change NA NA 17:1091665 17:31305630 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr17:30.07Mb]],duplication ABR NA EVI2B NA Oncogene NA NA NA NA -ABR--EVI2B BS_KE56MMY0 -1.29086608460143 1.76862343670827 NA NA no change no change NA NA 17:1083520 17:31305630 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr17:30.07Mb]],duplication ABR NA EVI2B NA Oncogene NA NA NA NA -ABR--WASF3 BS_QWTE1CWR 0.214354884401455 -1.93857275590648 NA NA no change no change NA NA 17:1067077 13:26685688 ARRIBA frameshift 112 20 high [INTERCHROMOSOMAL[chr17--chr13]],translocation ABR NA WASF3 NA Oncogene NA NA NA NA -ABR--WASF3 BS_WKESC3XN 0.283117959223922 -2.14371013331988 NA NA no change differentially expressed NA NA 17:1067077 13:26685688 ARRIBA frameshift 27 6 high [INTERCHROMOSOMAL[chr17--chr13]],translocation ABR NA WASF3 NA Oncogene NA NA NA NA -ABR--ZZEF1 BS_M0QYNVK8 0.0130591180460454 2.21125162415515 NA NA no change differentially expressed NA NA 17:1050050 17:4124051 ARRIBA in-frame 32 2 high [INTRACHROMOSOMAL[chr17:2.78Mb]],duplication ABR NA ZZEF1 NA Oncogene NA NA NA NA -ABRAXAS2--AC116407.2 BS_KE56MMY0 NA NA NA NA NA NA NA NA 10:124806921 17:32127460 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr10--chr17]],translocation ABRAXAS2 NA AC116407.2 NA NA NA NA NA NA -ABTB2--AP002791.1(164903)/AP003028.1(246170) BS_G23JJAZY 1.87927266881078 NA NA NA no change NA NA NA 11:34159296 11:91548192 ARRIBA frameshift 9 0 high [],duplication ABTB2 NA AP002791.1 AP003028.1 Oncogene NA NA NA NA -AC002127.2--EEF1A1P28(41023)/AC002127.2(29192) BS_VA5T4KAA 7.70544848589329 107.723709053583 NA 7.70544848589329 differentially expressed differentially expressed NA differentially expressed 7:88742077 7:88681439 ARRIBA other 4 1 high [],duplication AC002127.2 NA EEF1A1P28 AC002127.2 NA NA NA NA NA -AC002463.1--PCOLCE BS_84XCR9GG NA 0.763169802953447 NA NA NA no change NA NA 7:112635922 7:100605123 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:12.01Mb]],duplication AC002463.1 NA PCOLCE NA NA NA NA NA NA -AC002472.2--AC002472.3 BS_52MPKTJH NA NA NA NA NA NA NA NA 22:21008779 22:21013184 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[1931]],duplication AC002472.2 NA AC002472.3 NA NA NA NA NA NA -AC002472.2--AC002472.3 BS_7BTZQKYY NA NA NA NA NA NA NA NA 22:21008779 22:21013184 ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[1931]],duplication AC002472.2 NA AC002472.3 NA NA NA NA NA NA -AC002472.2--AC002472.3 BS_B741RZY9 NA NA NA NA NA NA NA NA 22:21008779 22:21013184 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[1931]],duplication AC002472.2 NA AC002472.3 NA NA NA NA NA NA -AC002472.2--AC002472.3 BS_K3ER45RV NA NA NA NA NA NA NA NA 22:21008779 22:21013184 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[1931]],duplication AC002472.2 NA AC002472.3 NA NA NA NA NA NA -AC003035.1--AC003035.1(14584)/GEMIN8(4875) BS_7BTZQKYY NA NA NA 1.7552942895088 NA NA NA no change X:13988690 X:14003404 ARRIBA other 5 1 medium [],duplication AC003035.1 NA AC003035.1 GEMIN8 NA NA NA NA NA -AC003991.2--ADAM22 BS_84XCR9GG NA 4.43436689682674 NA NA NA differentially expressed NA NA 7:88219224 7:88181505 ARRIBA other 23 3 medium [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[13771]],duplication AC003991.2 NA ADAM22 NA NA NA NA NA NA -AC004014.1(18335)/BUB3P1(23030)--TRPC4 BS_JXF8A2A6 NA 11.6424653463938 2.31026451075757 NA NA differentially expressed differentially expressed NA 7:108971001 13:37783360 ARRIBA other 4 0 medium [],translocation AC004014.1 BUB3P1 TRPC4 NA NA NA NA NA NA -AC004080.6--LRRC61 BS_Z1A875MW NA 0.694004947604725 NA NA NA no change NA NA 7:27140083 7:150325841 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr7:123.17Mb]],inversion AC004080.6 NA LRRC61 NA NA NA NA NA NA -AC004080.6--LRRC61 BS_Z1A875MW NA 0.694004947604725 NA NA NA no change NA NA 7:27140083 7:150336718 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:123.17Mb]],inversion AC004080.6 NA LRRC61 NA NA NA NA NA NA -AC004543.1--TMEM196(37647)/AC004543.1(2440) BS_4W68NV3M NA 0.603001600929233 NA NA NA no change NA NA 7:19814346 7:19811245 ARRIBA other 20 1 medium [],duplication AC004543.1 NA TMEM196 AC004543.1 NA NA NA NA NA -AC004656.1--PDK3 BS_N6NE6B3W NA 3.32611980314151 NA NA NA differentially expressed NA NA X:24546477 X:24494742 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chrX:0.01Mb],LOCAL_REARRANGEMENT:+:[5679]],duplication AC004656.1 NA PDK3 NA NA NA NA NA NA -AC004691.2--LINC01422 BS_70FFPA51 NA 2.79496787797483 NA NA NA differentially expressed NA NA 7:30882993 22:26906578 ARRIBA other 6 1 high [INTERCHROMOSOMAL[chr7--chr22]],translocation AC004691.2 NA LINC01422 NA NA NA NA NA NA -AC004691.2--LINC01422 BS_70FFPA51 NA 2.79496787797483 NA NA NA differentially expressed NA NA 7:30882993 22:26920377 ARRIBA other 4 1 high [INTERCHROMOSOMAL[chr7--chr22]],translocation AC004691.2 NA LINC01422 NA NA NA NA NA NA -AC004803.1--WNT5B(7859)/MIR3649(5213) BS_W644VEVE NA 7.93034064068299 NA NA NA differentially expressed NA NA 12:989809 12:1655102 ARRIBA other 24 0 high [],duplication AC004803.1 NA WNT5B MIR3649 NA NA NA NA NA -AC004828.1--DPF3 BS_52MPKTJH NA 4.04538485303356 NA NA NA differentially expressed NA NA 14:72594327 14:72619984 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA -AC004828.1--DPF3 BS_7FWZ518S NA 2.28139634364995 NA NA NA differentially expressed NA NA 14:72594327 14:72619984 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA -AC004828.1--DPF3 BS_81SP2HX4 NA 2.85232507589084 NA NA NA differentially expressed NA NA 14:72594327 14:72619984 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA -AC004828.1--DPF3 BS_FEPRNEXX NA 3.36468317424977 NA NA NA differentially expressed NA NA 14:72594327 14:72619984 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA -AC004828.1--DPF3 BS_GS1KR5PK NA 2.43112932831072 NA NA NA differentially expressed NA NA 14:72594327 14:72619984 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA -AC004828.1--DPF3 BS_N6NE6B3W NA 3.38125134237806 NA NA NA differentially expressed NA NA 14:72594327 14:72619984 ARRIBA other 15 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA -AC004828.1--DPF3 BS_N6NE6B3W NA 3.38125134237806 NA NA NA differentially expressed NA NA 14:72594327 14:72629736 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA -AC004828.1--DPF3 BS_SFKZSJN1 NA 2.72826697569547 NA NA NA differentially expressed NA NA 14:72594327 14:72619984 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA -AC004828.1--DPF3 BS_SFKZSJN1 NA 2.72826697569547 NA NA NA differentially expressed NA NA 14:72594327 14:72629736 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA -AC004828.1--DPF3 BS_ZRM0W01M NA 3.04511151069787 NA NA NA differentially expressed NA NA 14:72594327 14:72619984 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA -AC004828.1(22772)/DPF3(1399)--DPF3 BS_ZRM0W01M NA 3.04511151069787 3.04511151069787 NA NA differentially expressed differentially expressed NA 14:72617897 14:72771893 ARRIBA other 1 2 high [],duplication AC004828.1 DPF3 DPF3 NA NA TranscriptionFactor TranscriptionFactor NA NA -AC004852.2--NXPH1 BS_3T6X4BPC NA 1.19980517461773 NA NA NA no change NA NA 7:9189560 7:8751008 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:0.33Mb]],inversion AC004852.2 NA NXPH1 NA NA NA NA NA NA -AC004852.2--NXPH1 BS_9NJHQE9F NA -1.43087518160696 NA NA NA no change NA NA 7:9189560 7:8612991 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:0.33Mb]],deletion/5'-5' AC004852.2 NA NXPH1 NA NA NA NA NA NA -AC004852.2--NXPH1 BS_S1M423AB NA -1.29814418099773 NA NA NA no change NA NA 7:9189560 7:8612991 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr7:0.33Mb]],deletion/5'-5' AC004852.2 NA NXPH1 NA NA NA NA NA NA -AC004852.2--NXPH1 BS_TW8DQH8J NA -2.45533275061845 NA NA NA differentially expressed NA NA 7:9189560 7:8612991 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr7:0.33Mb]],deletion/5'-5' AC004852.2 NA NXPH1 NA NA NA NA NA NA -AC005258.1--FKBP8 BS_W97QQYKQ NA -0.425679596684973 NA NA NA no change NA NA 19:2269744 19:18541995 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr19:16.19Mb]],inversion AC005258.1 NA FKBP8 NA NA NA NA NA NA -AC005324.4--FOXO3 BS_BVSW4GTG NA 2.95024003948143 NA NA NA differentially expressed NA NA 17:15701240 6:108561086 ARRIBA in-frame 5 0 medium [INTERCHROMOSOMAL[chr17--chr6]],translocation AC005324.4 NA FOXO3 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -AC005330.1--AC005330.1(826)/MUM1(31039) BS_Q5WZYWCT NA NA NA -1.5142360196553 NA NA NA no change 19:1321456 19:1323672 ARRIBA other 5 2 medium [],duplication AC005330.1 NA AC005330.1 MUM1 NA NA NA NA NA -AC005330.1--AC005330.1(832)/MUM1(31033) BS_7BTZQKYY NA NA NA -0.329088487116721 NA NA NA no change 19:1321456 19:1323678 ARRIBA other 4 2 medium [],duplication AC005330.1 NA AC005330.1 MUM1 NA NA NA NA NA -AC005479.2--NPC2 BS_6JHXXVR7 NA 3.38515300901738 NA NA NA differentially expressed NA NA 14:74474304 14:74486436 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr14:0.00Mb],LOCAL_REARRANGEMENT:-:[1328]],duplication AC005479.2 NA NPC2 NA NA NA NA NA NA -AC005532.1--C1GALT1 BS_0BXY0F9N NA 4.19899753653078 NA NA NA differentially expressed NA NA 7:7267442 7:7234303 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA -AC005532.1--C1GALT1 BS_3F4FQJMR NA 5.38432437170609 NA NA NA differentially expressed NA NA 7:7267442 7:7234303 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA -AC005532.1--C1GALT1 BS_4W68NV3M NA 2.89690761990851 NA NA NA differentially expressed NA NA 7:7267401 7:7234304 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA -AC005532.1--C1GALT1 BS_6T4JGBGY NA 5.13593683899405 NA NA NA differentially expressed NA NA 7:7271844 7:7234303 ARRIBA other 9 1 high [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA -AC005532.1--C1GALT1 BS_6T4JGBGY NA 5.13593683899405 NA NA NA differentially expressed NA NA 7:7267442 7:7234303 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA -AC005532.1--C1GALT1 BS_7BTZQKYY NA 4.47103930438144 NA NA NA differentially expressed NA NA 7:7271844 7:7234303 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA -AC005532.1--C1GALT1 BS_7BTZQKYY NA 4.47103930438144 NA NA NA differentially expressed NA NA 7:7271844 7:7238255 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA -AC005532.1--C1GALT1 BS_7BTZQKYY NA 4.47103930438144 NA NA NA differentially expressed NA NA 7:7267442 7:7234303 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA -AC005532.1--C1GALT1 BS_KYF0Q0E7 NA 2.29088806319822 NA NA NA differentially expressed NA NA 7:7267442 7:7234303 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA -AC005532.1--C1GALT1 BS_QHS3V0GP NA 2.02575370951668 NA NA NA differentially expressed NA NA 7:7271844 7:7234303 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA -AC005833.3--AL365500.1(136907)/AL355300.1(53216) BS_A0DYVX9J NA NA NA NA NA NA NA NA 12:4669817 10:36035870 ARRIBA other 3 1 medium [],translocation AC005833.3 NA AL365500.1 AL355300.1 NA NA NA NA NA -AC005833.3--TMTC1 BS_49FQXT2E NA 2.24648319239639 NA NA NA differentially expressed NA NA 12:4669817 12:29512120 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr12:24.76Mb]],inversion AC005833.3 NA TMTC1 NA NA NA NA NA NA -AC005842.1(10391)/AC007207.2(100248)--PRMT8 BS_81SP2HX4 NA 0.773974865726146 NA NA NA no change NA NA 12:3920729 12:3549936 ARRIBA other 34 5 high [],inversion AC005842.1 AC007207.2 PRMT8 NA NA NA NA NA NA -AC005865.1--CCDC77 BS_W644VEVE NA 2.84829449265605 NA NA NA differentially expressed NA NA 12:3319726 12:428769 ARRIBA other 24 5 high [INTRACHROMOSOMAL[chr12:2.88Mb]],duplication AC005865.1 NA CCDC77 NA NA NA NA NA NA -AC005865.1--CCDC77 BS_W644VEVE NA 2.84829449265605 NA NA NA differentially expressed NA NA 12:3323452 12:405511 ARRIBA other 2 8 high [INTRACHROMOSOMAL[chr12:2.88Mb]],duplication AC005865.1 NA CCDC77 NA NA NA NA NA NA -AC005865.1--CCDC77 BS_W644VEVE NA 2.84829449265605 NA NA NA differentially expressed NA NA 12:3319726 12:405511 ARRIBA other 1 7 high [INTRACHROMOSOMAL[chr12:2.88Mb]],duplication AC005865.1 NA CCDC77 NA NA NA NA NA NA -AC005865.1--CCDC77 BS_W644VEVE NA 2.84829449265605 NA NA NA differentially expressed NA NA 12:3323452 12:428769 ARRIBA other 3 5 high [INTRACHROMOSOMAL[chr12:2.88Mb]],duplication AC005865.1 NA CCDC77 NA NA NA NA NA NA -AC005865.1--CCDC77 BS_W644VEVE NA 2.84829449265605 NA NA NA differentially expressed NA NA 12:3319726 12:431866 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr12:2.88Mb]],duplication AC005865.1 NA CCDC77 NA NA NA NA NA NA -AC005865.2--AC007207.1(56016)/CCND2-AS1(74617) BS_W644VEVE NA NA NA 2.35256618193704 NA NA NA differentially expressed 12:3366059 12:4174148 ARRIBA other 6 0 medium [],duplication AC005865.2 NA AC007207.1 CCND2-AS1 NA NA NA Oncogene NA -AC005865.2--AC010745.2(55621)/AC010745.4(31563) BS_W644VEVE NA 277.880413973593 NA 142.456031814028 NA differentially expressed NA differentially expressed 12:3366059 2:16284761 ARRIBA other 4 0 medium [],translocation AC005865.2 NA AC010745.2 AC010745.4 NA NA NA NA NA -AC005865.2--AC010745.2(73150)/AC010745.4(14034) BS_W644VEVE NA 277.880413973593 NA 142.456031814028 NA differentially expressed NA differentially expressed 12:3366059 2:16302290 ARRIBA other 6 0 medium [],translocation AC005865.2 NA AC010745.2 AC010745.4 NA NA NA NA NA -AC005865.2--CCND2 BS_W644VEVE NA 10.5051335938283 NA NA NA differentially expressed NA NA 12:3366059 12:4299860 ARRIBA other 307 2 medium [INTRACHROMOSOMAL[chr12:0.91Mb]],inversion AC005865.2 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA -AC005865.2--CRACR2A BS_81SP2HX4 NA 25.4762264020351 NA NA NA differentially expressed NA NA 12:3366059 12:3659654 ARRIBA other 11 0 medium [INTRACHROMOSOMAL[chr12:0.24Mb]],duplication AC005865.2 NA CRACR2A NA NA NA NA NA NA -AC005865.2--NINJ2 BS_W644VEVE NA 4.30346219338763 NA NA NA differentially expressed NA NA 12:3366059 12:566178 ARRIBA other 10 0 medium [INTRACHROMOSOMAL[chr12:2.63Mb]],deletion AC005865.2 NA NINJ2 NA NA NA NA NA NA -AC005865.2(132)/LINC02417(1579)--CCND2 BS_W644VEVE NA 10.5051335938283 NA NA NA differentially expressed NA NA 12:3366254 12:4299860 ARRIBA other 48 5 medium [],inversion AC005865.2 LINC02417 CCND2 NA NA CosmicCensus, Oncogene NA NA NA -AC005865.2(132)/LINC02417(1579)--PTPRO BS_H4B5Y6S0 NA 3.85306706647428 NA NA NA differentially expressed NA NA 12:3366254 12:15578853 ARRIBA other 4 1 high [],inversion AC005865.2 LINC02417 PTPRO NA NA NA NA NA NA -AC005906.2--RERGL BS_H4B5Y6S0 NA -0.399075637234555 NA NA NA no change NA NA 12:4910472 12:18088956 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr12:13.05Mb]],inversion AC005906.2 NA RERGL NA NA NA NA NA NA -AC006120.1--AC009120.2 BS_P4D8Y3S8 NA NA NA NA NA NA NA NA 17:66198221 16:74305273 ARRIBA other 10 0 low [INTERCHROMOSOMAL[chr17--chr16]],translocation/5'-5' AC006120.1 NA AC009120.2 NA NA NA NA NA NA -AC006236.1--ZSWIM7 BS_M0QYNVK8 NA 1.13837455997041 NA NA NA no change NA NA 17:5730652 17:15987368 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr17:10.25Mb]],duplication/3'-3' AC006236.1 NA ZSWIM7 NA NA NA NA NA NA -AC006299.1--GAS2 BS_1A6MQ9ZA NA 7.29931558898029 NA NA NA differentially expressed NA NA 11:22838364 11:22674850 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr11:0.02Mb],LOCAL_REARRANGEMENT:+:[16325]],duplication AC006299.1 NA GAS2 NA NA NA NA NA NA -AC006299.1--GAS2 BS_92VDQ0NE NA 0.670305613750981 NA NA NA no change NA NA 11:22838364 11:22674850 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr11:0.02Mb],LOCAL_REARRANGEMENT:+:[16325]],duplication AC006299.1 NA GAS2 NA NA NA NA NA NA -AC006299.1--GAS2 BS_92VDQ0NE NA 0.670305613750981 NA NA NA no change NA NA 11:22838364 11:22737705 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.02Mb],LOCAL_REARRANGEMENT:+:[16325]],duplication AC006299.1 NA GAS2 NA NA NA NA NA NA -AC006453.2--AC093913.1(143692)/snoU13(107951) BS_4QW2S1Q8 NA NA NA NA NA NA NA NA 2:89581006 4:34858290 ARRIBA other 6 0 medium [],translocation AC006453.2 NA AC093913.1 snoU13 NA NA NA NA NA -AC006453.2--AC093913.1(143692)/snoU13(107951) BS_MX23ZY0Y NA NA NA NA NA NA NA NA 2:89580558 4:34858290 ARRIBA other 5 0 medium [],translocation AC006453.2 NA AC093913.1 snoU13 NA NA NA NA NA -AC006453.2--AC093913.1(143692)/snoU13(107951) BS_P9JP6JFA NA NA NA NA NA NA NA NA 2:89581006 4:34858290 ARRIBA other 10 0 medium [],translocation AC006453.2 NA AC093913.1 snoU13 NA NA NA NA NA -AC007036.1(48731)/ZNRF2(56562)--ST7-AS2 BS_6WP1FHTE NA 8.14391200746179 4.72007251750714 NA NA differentially expressed differentially expressed NA 7:30227745 7:117081072 ARRIBA other 2 1 high [],inversion AC007036.1 ZNRF2 ST7-AS2 NA NA NA NA NA NA -AC007038.1--RPE BS_9DFBHHB5 NA 1.08035227414065 NA NA NA no change NA NA 2:210035244 2:210015973 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA -AC007038.1--RPE BS_ARBQDTT5 NA 1.2509108637054 NA NA NA no change NA NA 2:210032924 2:210009657 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA -AC007038.1--RPE BS_ARBQDTT5 NA 1.2509108637054 NA NA NA no change NA NA 2:210035244 2:210015973 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA -AC007038.1--RPE BS_D144EJRQ NA 1.13499069138028 NA NA NA no change NA NA 2:210035244 2:210009657 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA -AC007038.1--RPE BS_FEPRNEXX NA 1.38247759539485 NA NA NA no change NA NA 2:210035244 2:210015973 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA -AC007038.1--RPE BS_FEPRNEXX NA 1.38247759539485 NA NA NA no change NA NA 2:210035244 2:210009657 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA -AC007038.1--RPE BS_ME3HKN2C NA 0.889958743723309 NA NA NA no change NA NA 2:210035244 2:210015973 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA -AC007038.1--RPE BS_ME3HKN2C NA 0.889958743723309 NA NA NA no change NA NA 2:210035244 2:210009657 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA -AC007038.1--RPE BS_S5P8VTN5 NA 1.15583207801353 NA NA NA no change NA NA 2:210032924 2:210015973 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA -AC007091.1--AC003986.1(153075)/AC007091.1(54206) BS_A14Z8BBK 45.7743651849396 NA NA 45.7743651849396 differentially expressed NA NA differentially expressed 7:19405370 7:19299328 ARRIBA other 2 0 medium [],duplication AC007091.1 NA AC003986.1 AC007091.1 NA NA NA NA NA -AC007091.1--AC003986.1(153075)/AC007091.1(54206) BS_Q5WZYWCT 32.9156871392884 NA NA 32.9156871392884 differentially expressed NA NA differentially expressed 7:19405370 7:19299328 ARRIBA other 3 0 medium [],duplication AC007091.1 NA AC003986.1 AC007091.1 NA NA NA NA NA -AC007091.1--AC003986.1(153075)/AC007091.1(54206) BS_Z7PKVY9J 34.5291226560959 NA NA 34.5291226560959 differentially expressed NA NA differentially expressed 7:19405370 7:19299328 ARRIBA other 3 0 high [],duplication AC007091.1 NA AC003986.1 AC007091.1 NA NA NA NA NA -AC007091.1(30716)/TWISTNB(86140)--AC007091.1 BS_A14Z8BBK 45.7743651849396 45.7743651849396 0.63932151278642 NA differentially expressed differentially expressed no change NA 7:19609322 7:19576287 ARRIBA other 8 0 medium [],duplication AC007091.1 TWISTNB AC007091.1 NA NA NA NA NA NA -AC007091.1(30716)/TWISTNB(86140)--AC007091.1 BS_G63HYD6N 18.4999791029984 18.4999791029984 1.18719879609133 NA differentially expressed differentially expressed no change NA 7:19609322 7:19576287 ARRIBA other 3 0 low [],duplication AC007091.1 TWISTNB AC007091.1 NA NA NA NA NA NA -AC007091.1(30716)/TWISTNB(86140)--AC007091.1 BS_QEYPFYHD 27.4281690724665 27.4281690724665 0.647785580664699 NA differentially expressed differentially expressed no change NA 7:19609322 7:19576287 ARRIBA other 26 1 high [],duplication AC007091.1 TWISTNB AC007091.1 NA NA NA NA NA NA -AC007091.1(30716)/TWISTNB(86140)--AC007091.1 BS_QEYPFYHD 27.4281690724665 27.4281690724665 0.647785580664699 NA differentially expressed differentially expressed no change NA 7:19609322 7:19576287 ARRIBA other 12 1 high [],duplication AC007091.1 TWISTNB AC007091.1 NA NA NA NA NA NA -AC007091.1(30716)/TWISTNB(86140)--AC007091.1 BS_TE0GVDNG 33.8891317282849 33.8891317282849 1.77268391510055 NA differentially expressed differentially expressed no change NA 7:19609322 7:19576287 ARRIBA other 9 1 high [],duplication AC007091.1 TWISTNB AC007091.1 NA NA NA NA NA NA -AC007091.1(30716)/TWISTNB(86140)--AC007091.1 BS_Z7PKVY9J 34.5291226560959 34.5291226560959 0.923995811652858 NA differentially expressed differentially expressed no change NA 7:19609322 7:19576287 ARRIBA other 13 0 high [],duplication AC007091.1 TWISTNB AC007091.1 NA NA NA NA NA NA -AC007115.1(48390)/AC025035.1(119864)--CCER1 BS_Q9V7A95C NA 170.350406674511 NA NA NA differentially expressed NA NA 12:91242332 12:90905864 ARRIBA other 23 0 medium [],inversion AC007115.1 AC025035.1 CCER1 NA NA NA NA NA NA -AC007207.1--PARP11 BS_W644VEVE NA 4.92179106477613 NA NA NA differentially expressed NA NA 12:4109922 12:3827034 ARRIBA other 25 2 medium [INTRACHROMOSOMAL[chr12:0.24Mb]],inversion/5'-5' AC007207.1 NA PARP11 NA NA NA NA NA NA -AC007207.1(5333)/CCND2-AS1(125300)--PARP11 BS_W644VEVE NA 4.92179106477613 2.35256618193704 NA NA differentially expressed differentially expressed NA 12:4123465 12:3830018 ARRIBA other 1 1 low [],inversion AC007207.1 CCND2-AS1 PARP11 NA NA NA Oncogene NA NA -AC007207.2(47998)/HSPA8P5(22795)--PLCL2 BS_81SP2HX4 NA 1.46051718386972 13.2981846871522 NA NA no change differentially expressed NA 12:4074656 3:17067956 ARRIBA other 5 0 medium [],translocation AC007207.2 HSPA8P5 PLCL2 NA NA NA NA NA NA -AC007221.2--AC007221.1 BS_7ZV3DPGT NA NA NA NA NA NA NA NA 16:9566590 16:9514699 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr16:0.02Mb],LOCAL_REARRANGEMENT:+:[24481]],duplication AC007221.2 NA AC007221.1 NA NA NA NA NA NA -AC007389.1(49305)/AC118345.1(101433)--AC007389.1 BS_JTMXAMB7 64.4570579405311 64.4570579405311 -0.0506116872411649 NA differentially expressed differentially expressed no change NA 2:66133944 2:66072504 ARRIBA other 3 10 high [],duplication AC007389.1 AC118345.1 AC007389.1 NA NA NA NA NA NA -AC007389.1(50200)/AC118345.1(100538)--AC007389.1 BS_M84H3KXA 51.6904438764898 51.6904438764898 -0.0506116872411649 NA differentially expressed differentially expressed no change NA 2:66134839 2:66072504 ARRIBA other 2 0 low [],duplication AC007389.1 AC118345.1 AC007389.1 NA NA NA NA NA NA -AC007389.3--BHMT BS_77317DY4 43.6048215875017 16.164797535197 NA NA differentially expressed differentially expressed NA NA 2:65601157 5:79130933 ARRIBA other 7 0 medium [FA_CancerSupp,INTERCHROMOSOMAL[chr2--chr5]],translocation AC007389.3 NA BHMT NA NA NA NA NA NA -AC007389.3--BHMT BS_HB03GSHF 8.04211539329627 19.4928478204214 NA NA differentially expressed differentially expressed NA NA 2:65601157 5:79130933 ARRIBA other 4 0 medium [FA_CancerSupp,INTERCHROMOSOMAL[chr2--chr5]],translocation AC007389.3 NA BHMT NA NA NA NA NA NA -AC007389.3--BHMT BS_JZRM1S3T 16.2818992200302 18.5472863212496 NA NA differentially expressed differentially expressed NA NA 2:65601157 5:79130933 ARRIBA other 25 0 medium [FA_CancerSupp,INTERCHROMOSOMAL[chr2--chr5]],translocation AC007389.3 NA BHMT NA NA NA NA NA NA -AC007389.3--BHMT BS_M84H3KXA 34.0112895814569 20.3356601914243 NA NA differentially expressed differentially expressed NA NA 2:65601157 5:79130933 ARRIBA other 23 0 medium [FA_CancerSupp,INTERCHROMOSOMAL[chr2--chr5]],translocation AC007389.3 NA BHMT NA NA NA NA NA NA -AC007389.3--BHMT BS_YETBN0RQ 4.16394105410327 16.4301164052348 NA NA differentially expressed differentially expressed NA NA 2:65601157 5:79130933 ARRIBA other 9 0 medium [FA_CancerSupp,INTERCHROMOSOMAL[chr2--chr5]],translocation AC007389.3 NA BHMT NA NA NA NA NA NA -AC007563.2--RN7SKP43(9785)/DIRC3-AS1(21079) BS_CGB2WS2A NA -0.203039029752556 NA 1.11307492955109 NA no change NA no change 2:216712469 2:217261660 ARRIBA other 1 0 low [],deletion AC007563.2 NA RN7SKP43 DIRC3-AS1 NA NA NA NA NA -AC007570.1--KCTD10 BS_EFE4YEK3 NA 3.33938911847517 NA NA NA differentially expressed NA NA 12:109447067 12:109460805 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[1159]],duplication AC007570.1 NA KCTD10 NA NA NA NA NA NA -AC008667.1--CXXC5 BS_W4DB5RP1 NA 1.04335596000063 NA NA NA no change NA NA 5:139685432 5:139680364 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:+:[763]],duplication AC008667.1 NA CXXC5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -AC008667.1--CXXC5 BS_W4DB5RP1 NA 1.04335596000063 NA NA NA no change NA NA 5:139685432 5:139665580 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:+:[763]],duplication AC008667.1 NA CXXC5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -AC008695.1--AC008695.1 BS_B741RZY9 NA NA NA NA NA NA NA NA 5:131439581 5:131548190 ARRIBA frameshift 3 0 low [SELFIE],duplication/non-canonical_splicing AC008695.1 NA AC008695.1 NA NA NA NA NA NA -AC008695.1--RAPGEF6 BS_B741RZY9 NA 1.03636567586009 NA NA NA no change NA NA 5:131472587 5:131521521 ARRIBA frameshift 1 0 low [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA -AC008695.1--RAPGEF6 BS_B741RZY9 NA 1.03636567586009 NA NA NA no change NA NA 5:131504626 5:131548190 ARRIBA in-frame 1 0 low [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA -AC008695.1--RAPGEF6 BS_B741RZY9 NA 1.03636567586009 NA NA NA no change NA NA 5:131439581 5:131548190 ARRIBA frameshift 3 0 medium [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA -AC008695.1--RAPGEF6 BS_R7HZCZ8B NA 1.20146859764369 NA NA NA no change NA NA 5:131489546 5:131521521 ARRIBA frameshift 4 0 medium [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA -AC008695.1--RAPGEF6 BS_R7HZCZ8B NA 1.20146859764369 NA NA NA no change NA NA 5:131489546 5:131562047 ARRIBA frameshift 1 0 low [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA -AC008695.1--RAPGEF6 BS_R7HZCZ8B NA 1.20146859764369 NA NA NA no change NA NA 5:131453054 5:131521521 ARRIBA frameshift 1 0 low [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA -AC008695.1--RAPGEF6 BS_R7HZCZ8B NA 1.20146859764369 NA NA NA no change NA NA 5:131592383 5:131604693 ARRIBA frameshift 1 0 low [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA -AC008695.1--RAPGEF6 BS_R7HZCZ8B NA 1.20146859764369 NA NA NA no change NA NA 5:131521390 5:131548190 ARRIBA in-frame 1 0 low [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA -AC008695.1--RAPGEF6 BS_R7HZCZ8B NA 1.20146859764369 NA NA NA no change NA NA 5:131504626 5:131521521 ARRIBA in-frame 1 0 low [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA -AC008695.1--SPOCK1 BS_51RA1PGE NA 0.135294350884374 NA NA NA no change NA NA 5:131521390 5:137441060 ARRIBA frameshift 7 2 high [],inversion/5'-5' AC008695.1 NA SPOCK1 NA NA NA NA NA NA -AC008837.2(148398)/AC092284.1(204600)--AL356489.2 BS_49BQS7Z6 NA NA NA NA NA NA NA NA 5:99743695 9:33700132 ARRIBA other 2 0 medium [],translocation AC008837.2 AC092284.1 AL356489.2 NA NA NA NA NA NA -AC008837.2(148398)/AC092284.1(204600)--AL356489.2 BS_AG3D3435 NA NA NA NA NA NA NA NA 5:99743695 9:33700132 ARRIBA other 2 0 medium [],translocation AC008837.2 AC092284.1 AL356489.2 NA NA NA NA NA NA -AC008837.2(148398)/AC092284.1(204600)--AL356489.2 BS_FWMJPKCV NA NA NA NA NA NA NA NA 5:99743695 9:33700132 ARRIBA other 3 0 medium [],translocation AC008837.2 AC092284.1 AL356489.2 NA NA NA NA NA NA -AC008837.2(148398)/AC092284.1(204600)--AL356489.2 BS_M4TTKPNR NA NA NA NA NA NA NA NA 5:99743695 9:33700132 ARRIBA other 4 0 medium [],translocation AC008837.2 AC092284.1 AL356489.2 NA NA NA NA NA NA -AC008837.2(148398)/AC092284.1(204600)--AL356489.2 BS_TMTV769C NA NA NA NA NA NA NA NA 5:99743695 9:33700132 ARRIBA other 2 0 medium [],translocation AC008837.2 AC092284.1 AL356489.2 NA NA NA NA NA NA -AC009075.1(11625)/AC009075.2(41499)--LINC01572 BS_RHD7XPNP NA 6.3151418019071 NA NA NA differentially expressed NA NA 16:72236769 16:72308188 ARRIBA other 2 1 medium [],duplication AC009075.1 AC009075.2 LINC01572 NA NA NA NA NA NA -AC009093.3--ANK2 BS_014EVM2D NA 1.34947134185702 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_02NZT8CE NA 0.819482901322291 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_044XZ8ST NA 1.34904955941134 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 61 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_052PZFMK NA 0.320836308881881 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_063ERW0R NA 0.945136588782071 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_06AMMCXR NA -0.845163035856809 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_07ANYSYQ NA 1.33804507765298 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_09R7GDA7 NA 1.80929535425522 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_09Z7TC35 NA -0.0613542110579309 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_0BXY0F9N NA 0.57294728491451 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_0C7VZC0A NA 1.65880463681231 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_0HW7W7SD NA -1.38941619741803 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_0J9SHHSC NA 0.0257919257294979 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_0QYS36NR NA -0.571388228011334 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 1 high [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_0SCXXM6N NA 1.12574493338291 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_0T17SY47 NA 0.41056471207971 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_0WVJYM9R NA 0.576999481254237 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_0X9EGHY2 NA 1.19249993822183 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_0XEG6SNV NA 2.1543518839316 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_0Y66ZBWE NA 0.845851667779037 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_13CGKADW NA 1.52402676233874 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_15ETQ0E4 NA -2.2681931527048 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_17WYVEEC NA 0.102262417852409 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_196BBNEJ NA 0.640079862216022 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1A6MQ9ZA NA 0.792290019210295 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1AYRM596 NA -1.22006925361671 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1D6PZNKN NA 0.92742577238807 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1EN5V3XW NA 1.7799107991454 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1G3WYEN3 NA 1.90709278910137 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 59 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1HQ76V6D NA 1.79058851940156 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1J2WQ08M NA -1.58072505721941 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1JDG6JV5 NA -0.0282121810870386 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1KYGSMA7 NA 0.55458783132121 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1NPD7PVG NA 0.983687656271448 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1QNTEZPS NA -0.295723882563386 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1QXEC43H NA -0.213712119872143 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1RT76ANT NA 2.34087743588075 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1RXZ3BP7 NA 0.575199737523371 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1T19NFJ8 NA 1.43533196232303 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1TPWFSK6 NA 0.71412261423994 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1TWCV047 NA 0.925243936156642 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1XJ73KBQ NA -3.92726572473975 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1ZVXF5FE NA 1.25665090743024 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_21RE8W46 NA 1.58166441182868 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_24AHZ9ZW NA 0.73631308062182 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_258RRGDM NA 1.49559040938376 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_25T139TX NA 2.10297280906358 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_264RCK7G NA 0.295951620451494 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_273HKCT4 NA 0.259541182811029 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_27QE6BV7 NA 1.26880239367051 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_29CPJ040 NA 1.3605395305142 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_2A162JH9 NA -1.44381772339886 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_2A5R9MEJ NA 0.759214774286516 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_2ADZNNV4 NA 1.43306215712902 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 81 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_2AR3AP0N NA 1.28744695098056 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_2EMW8ZG3 NA 1.73582617215952 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_2EN3X6HB NA 0.781801954577578 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_2KJ2YAZR NA 0.730588682318541 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_2R9TCR03 NA 1.46114636195447 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_2SFTWNVE NA -0.0243185340417173 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_2WPQ8YCW NA 0.200967737228094 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_2XD3MNKD NA 1.12558386589633 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_2Z1MKS84 NA -2.48474084089671 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_30VC3R2Q NA 0.396824108871883 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_34201DKZ NA 0.74891807674837 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 93 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_37GTVG4N NA 0.750942124060086 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 64 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_398KYV92 NA 1.31495161598611 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_399RPKC9 NA 0.891421524221469 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_39CGACC7 NA 0.930511760914926 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3BVVWHP5 NA 2.15908470615183 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3EVSN5QD NA 2.18330888210668 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3F4FQJMR NA 1.65109927901527 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3F5PR9GS NA -0.385670037599962 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3G3KWY18 NA 0.849284967353777 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 65 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3H71BH6Q NA 1.08051518528948 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3KASVCSQ NA 1.88043710878604 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3MS8WVNR NA 1.35508479658221 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3MYEMXPQ NA -1.621296256447 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3NNQ6PSB NA 0.778423642407554 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3NWQXPQV NA -2.43627877206768 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3P20Q2C3 NA 1.0387678323262 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3PYESPHA NA 2.05388051008924 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3Q0GTSYH NA 0.393810842738193 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3V3KE3VT NA -0.420348974346733 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3W07B2TG NA 1.53373250603579 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 46 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3X9WMZGJ NA 1.11248473646671 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_3XY76V8T NA 1.28876023373155 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_401R3KV0 NA 0.862757968598105 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_40MP5BWR NA 0.703330586476467 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_42DY6WS7 NA 0.504603121054084 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_42Y3YANN NA 0.0950446744516571 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_44A3ES23 NA 0.642242287768024 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_470DYRJQ NA 1.34228628845575 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_478TN841 NA 0.601105217254139 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_47SJZ3PH NA 1.37375148678156 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_49852ZBH NA 0.66733367400589 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_49BQS7Z6 NA 1.32054085892679 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 55 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_49FQXT2E NA 1.63569754213917 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_49VCQD19 NA -0.408025685143522 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4A45GGSW NA 0.138764249479575 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4B0BAVTX NA 1.06538070385637 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4BWB0FA0 NA 1.34299209485972 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 120 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4C4MZ4NT NA -0.369999982613883 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4CP4T22V NA -1.9975345977796 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4E1G7E3G NA 1.0338360725953 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4FZS7TX4 NA 0.602655501414634 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4HQ3T2NC NA 0.395318165866081 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4NF35AF6 NA 0.374851815038403 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4PH1MBGR NA -0.993085714936512 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4QW2S1Q8 NA -0.338316062550575 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4SCWT0FX NA -0.195629916660388 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4T0HPZDC NA -0.151275469624287 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4W1DBAN4 NA 1.73170861504413 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4W68NV3M NA -1.929059680833 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4Y6BCYK5 NA 0.997326876443687 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4Z2F4P9N NA -0.565523010358968 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_51RA1PGE NA 0.94315811547037 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_52426AMF NA 1.00653043250895 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_52C576HH NA 0.96692155147645 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_52DAPP1Y NA 0.689320251586575 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_52MPKTJH NA 1.91398898636555 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_53CTGDQG NA 2.44354633337994 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_53GQKVEX NA 0.0959486264600833 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_53M8PP88 NA -0.688451040947146 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_55JW3HFM NA 0.590658150576175 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_55P8HPYD NA 0.406329860691307 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_593HEWBF NA 1.08349239160148 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_5965SFPZ NA 1.05532519686033 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_5CMGN56B NA 0.787746806728969 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_5JM573JC NA 0.753973532372789 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_5K3R0F5D NA 1.67549206607838 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_5NWDARXG NA 1.1160528567927 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_5P1TN10Z NA 1.09731520568633 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_5P3CZQV8 NA -0.562373458181785 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_5PEFNDCY NA 0.845087738068169 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 52 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_5PJCHF6V NA -1.89434629938341 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_5PV5N4HQ NA 0.435992353339393 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_5YJEPPTP NA 0.489021996620598 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_60K3EQ9S NA 1.22572196578906 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_61E80SD6 NA 0.307381783210278 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_66ABA973 NA 0.57474949371056 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_66HQ3E4Z NA 0.413299111110071 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_67Z63A2K NA 1.33960145843213 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_680K119G NA 1.65191822731725 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_68BW2163 NA 0.0166500759361335 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_699TN5RN NA 0.487360762157818 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_6G6C7VPX NA 0.198139291753856 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_6H1C1ME9 NA 0.983863235736565 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_6HTK4YJP NA -2.40428703646751 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_6MY8W3H0 NA 1.68239549966733 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_6MZ7FRZH NA 1.77155771394066 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_6N3AFF66 NA 0.259813874619318 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_6NTXGQAC NA -0.099582319846426 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_6P50QTPP NA 1.36416599539809 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 56 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_6VF6VPCG NA 1.13425901732769 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_6WP1FHTE NA 0.779219163892437 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_74FS6GMW NA -0.952700717036529 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_769BDPDB NA 0.803691398318742 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_775HDFNY NA 0.774041383059034 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_77CDMEY4 NA 0.487598184119679 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_78QX3XDF NA 0.280137973391775 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_7B89YR6K NA 2.34402879633991 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_7BTZQKYY NA 1.16426670141639 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 93 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_7C40TRCY NA -0.31610792783076 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_7FWZ518S NA 0.238683187861936 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_7N0B2CY1 NA 1.97555589353042 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_7P83Z28P NA 0.763837375810769 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_7T1J3KET NA 1.01050846007227 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_7XQRH69M NA 0.0220152521115831 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_7XRN3CFX NA 1.49893128995326 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 62 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_7Z93ZYMS NA 0.400582944905535 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_7ZV3DPGT NA -0.390926742331116 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_81SP2HX4 NA -0.47654904797607 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_850BAHH9 NA -2.24427380873787 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_86Q14TZG NA 0.769047328581641 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_8D0NYM46 NA -0.8030014029963 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_8F9BDWY4 NA 0.0606288845483663 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_8GW1TMV2 NA -0.35012612266142 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_8J3B6ZB6 NA 0.20350918605403 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_8NY9J9NQ NA 1.46180297126413 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_8PNA0V6R NA 0.560503352511426 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_8RCR7Y4B NA 0.734883847775938 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_8RHPJ740 NA 0.343796259159896 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_8S86CM61 NA -2.42508049467817 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_8SKZ7BRN NA -0.00626907292565134 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_8VAZSJEN NA 1.36736737030738 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_8Z3SCKB5 NA 1.44185686998254 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_8ZP3CBQA NA -0.292668872373821 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_90B22NGP NA 2.16927843873344 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_912NX4Y0 NA 0.997152728459202 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_91VYM11A NA 1.7803435686882 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_92VDQ0NE NA 1.58970121482658 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_94MT16N2 NA 1.39028999353203 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_9755PSCS NA 1.16536765144225 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_97M1E2DW NA -0.176677374346073 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_983Z6CA6 NA -0.438591810240421 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_996ZS2A4 NA -1.71369699787575 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_9BJARSX3 NA 0.994189388052384 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_9CA93S6D NA 0.16496885005652 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_9DFBHHB5 NA 0.91959409296172 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_9DZ253JY NA -1.83676953492664 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_9F09XV62 NA 0.764038064071396 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_9FHSNVS0 NA 0.964436244049315 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_9HSGV9TJ NA 1.75307421537733 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_9M5XJ10G NA 0.574073896807271 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_9NJHQE9F NA -0.47654904797607 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_9NZ2D6AD NA -0.0181723823088984 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_9PB3XH5D NA 1.06788500414925 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_9Q6Z6VJC NA 0.199271253696632 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_9SJWWYQ4 NA 1.08547420604501 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_A13BMEF5 NA 0.558685457175288 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_A14Z8BBK NA -0.184160770073881 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_A1VEGWTR NA 0.64289046142683 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_A3QZB9Y2 NA -0.241953426749211 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_A46RDWGM NA 0.201815323249393 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_A7MC2KR2 NA 0.903633626911404 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_A7Q8G0Y1 NA 0.515142612968729 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_A87NPZAP NA -1.13640926537673 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ABYF92Z9 NA 0.772245269825709 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_AD4JPN9Q NA 1.33279914384031 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 46 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_AG3D3435 NA 1.96862417372169 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_AG4H9S3J NA 0.849475496243413 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_AGTPCRR4 NA 0.515842850247993 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_AHEFXG7W NA 0.70832032299342 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_AJ6X83G5 NA 2.17141197209518 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_AKRHBPNZ NA 1.35298199556541 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 44 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_AM70R8RG NA 0.16583518699408 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_AMQGM1V9 NA 2.1016386224956 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_AMZ70B6F NA -0.303770387464115 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_AP0SZ364 NA 0.776632310985684 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ARBQDTT5 NA 1.7133326854535 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ARFQ1WG3 NA 0.134355936366346 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_AVYNZHSB NA 1.09321340138092 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_AWH9757B NA 0.606635249489289 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_B0SVFK4P NA 0.852901247479905 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_B1C6GZ84 NA -0.518901514837048 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_B1HVNV0T NA 1.93302761472324 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_B3M5SGPA NA 1.27204733186184 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_B61168DE NA -2.5723820666496 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_B7GEH89C NA 0.689950138862262 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_B7QS4DHK NA 0.0817293141341181 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_B7X8VXQ3 NA 1.26258967769523 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_B8T7M0WV NA 0.659440098493744 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_BA6AZWB3 NA 1.42287631227946 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_BB0YW800 NA 1.22723687852205 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_BC936YNZ NA 1.37014611845597 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_BHR08WGW NA -0.614432338281802 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_BJDNWMJH NA 2.601915953715 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_BKQZ550R NA 0.477596834814635 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_BKR4E30C NA 0.227876159699295 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_BN986DF6 NA 0.2130749300361 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_BPSTSCBJ NA 0.705827346937609 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_BPWEFR89 NA 0.800946568866458 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_BSV07M7Z NA -1.44304969133357 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_BVSW4GTG NA -0.568227435146859 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_BWBDH9GM NA -1.38570430092509 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_C05FKR8X NA 0.956600738967151 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_C41DJZ1F NA -0.137330997475541 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_C51RB0YR NA 1.453114550059 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_C6SKJG3N NA 0.61851703955045 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_C6ZZ3FY5 NA 2.09985802186924 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_C7A2TYAC NA -0.231627666856442 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_C7N3J4NW NA 1.58019894635787 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_C80S5N37 NA 0.866721883226526 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_CB6VK7PB NA -0.161811960737733 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_CGB2WS2A NA 1.23132018687875 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_CQSAJ7BF NA 1.08992457677392 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_CREQ97QC NA 1.84014732040465 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_CS170P7T NA 1.86036405982265 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_CTR5X93B NA 0.852901247479905 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_CVGFNCBJ NA 1.38974138090589 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_CW9QV8AG NA 1.51502627085867 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_CZ3ER8DY NA 1.03366574787729 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_CZ82ANWP NA 0.0439245855299003 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_D0BGESQF NA 0.133472854123423 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_D0RDN4K5 NA 0.894761100268177 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_D144EJRQ NA -0.187378392171997 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_D29RPBSZ NA 0.485460151646819 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_D2K9C7XR NA 0.384737779128374 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_D3YBV7KB NA 0.821228190142709 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 54 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_D8N31T39 NA 1.01378741526568 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_DBDXCXT5 NA 0.452809141173327 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_DEHJF4C7 NA 1.1077694469438 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_DFWFBYSN NA -0.835051348249805 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_DGTPWJ59 NA -1.82995497385202 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_DHA5FMVW NA -0.983186378681404 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_DMZP9G1H NA 1.77177521468653 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_DPF1CX0G NA 0.802319556181955 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_DSS3S5XD NA 0.375360235641504 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_DV86M0Y7 NA 1.22784245313785 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_DVCQ8XDZ NA 1.83314329782412 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 52 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_DY88N5ZT NA 2.50991579073885 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_E0N3PTPN NA 1.10662924541603 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_E1CGF3KV NA 1.05515708313422 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_E2Z940S4 NA -3.31817969772348 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_E3BAT4C1 NA -3.04859876305648 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_E4GC9EXR NA 0.643538379748359 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_E4QK839R NA 0.932505496022385 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_E60JZ9Z3 NA 0.285784003193869 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_E94QRJDW NA 0.882295951215204 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_EF775B3K NA 1.65402222387187 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_EFE4YEK3 NA -1.24438619058378 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_EFEZB0ZH NA 0.306056768526571 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_EHVYJAVA NA 0.522131606365857 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_EJ9JKM1C NA -0.607487610280926 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_EK5PCKY0 NA -2.39193598490033 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_EMYET8F4 NA 0.588873298921981 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_EN2VK7NY NA 0.270684638831952 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ERJAJ0KA NA 0.223700629053686 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ERWT0ZWE NA -0.208266554900043 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ET8CJXSF NA 1.22162471799745 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_EXGBH3TD NA 0.864835496234639 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_EYSS0ZDS NA 1.6147754363513 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_EYYMKWB7 NA 1.82484632225254 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_F4E8R9VY NA 0.513273854764074 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_F6V1Y4QS NA 0.413299111110071 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_F6Z5HFWH NA -0.949853666580203 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_F8N6CFQE NA 0.605972626514666 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_FAQQ0GCQ NA 0.655586239469015 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_FBJ5Q54N NA 1.7786118068668 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_FCAKKZ20 NA -0.670111606734921 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_FEPRNEXX NA 1.80982672137706 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_FEV5A0HN NA 1.63770440338546 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_FJWZ3M7V NA 0.942978136191542 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_FJZPQZ2C NA 1.19481810722847 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 52 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_FQX1PRAJ NA -0.595977831764639 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_FRZ76GEG NA 0.484509022149195 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_FW5ECXXK NA 0.974708158237359 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_FWMJPKCV NA -0.0465054135025164 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_G00FHF3Q NA -1.69658757881027 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_G23JJAZY NA 2.17141197209518 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_G3RJTBZD NA 0.371797986580212 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_G5QBBHDV NA 1.77155771394066 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_G7AGNB5G NA 0.229821118869356 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_G9XE3N9T NA 1.53473761836586 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GCA4GET3 NA 1.10075283355099 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GCQFGDTX NA 0.0686115876529316 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GE2RVZE6 NA -1.43004772134808 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GG9W3J9Y NA 0.88117504660258 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GHNJ4CYC NA 0.37358007551944 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GJNCYABP NA 0.53417595158096 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GMDQK06Q NA 1.6981642885114 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 69 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GMJBGBWB NA 1.55533224944473 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GNV89A5P NA -1.94148851054091 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GPEGRCCT NA 0.811313642948519 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GR46VD0Q NA 0.430102496954166 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GS1KR5PK NA 1.13905884749853 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GSVCN2XC NA -2.69920715401069 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GTZCFGRZ NA 1.26333051849778 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GV3NZ9QD NA 0.740389772851292 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 59 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GW0GKWMS NA 1.03689890520839 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GWCRMKE6 NA 1.73515916006335 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GYA4V1RD NA 1.00739603993797 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_GYXSDZ56 NA 1.84098163182343 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 57 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_H0QWRJE2 NA 2.18313953072289 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_H1ZS5FMZ NA 0.860867027210316 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_H3FE3TH9 NA 0.316627117491975 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_H4B5Y6S0 NA -1.17574820355542 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_H8A9PSYA NA 0.219514470932514 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_HA20Y4XY NA 0.385748372486086 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_HC44ZA0V NA 1.66508228045598 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_HC5M8JTC NA 0.648066675417231 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 50 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_HCP5C912 NA 1.4870791090584 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_HD4EJYE3 NA -1.44535486429386 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_HF3RNN2T NA -0.754298963448661 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_HHPA8NJ2 NA 0.8923498646186 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_HQ5BJ6MW NA 0.544528224194817 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_HSHN8PBB NA 0.955529362984464 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_HV8PFRBR NA 1.13441923754485 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_HX0S30NE NA 0.23370415084681 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_HZ707C55 NA 0.487598184119679 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_HZE3KYZ1 NA 0.187061642610937 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_HZRM07TW NA -0.551174037012767 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_J1AB8PMA NA -0.252716745878256 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_J483EMFP NA -0.0610227771751103 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_J60G8DMK NA -1.26148699589368 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_J6VKB1VE NA 0.799965161451498 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_J71N7D09 NA 1.67075799940626 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_J8G4SH4Z NA -1.75587214556085 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_J8VX4D17 NA 0.556410258807313 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JCPKYHKY NA -0.0139803148903875 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JFR750KD NA 0.661150030435081 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 44 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JH29M4KG NA 0.972764959792405 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JHGW42S6 NA 0.858405548791634 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JKXA3FQC NA 1.06654985185844 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JMHG7GCN NA 1.00288989838528 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JSPR854S NA -0.705525470523375 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JT82QGXF NA -1.79534781577615 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JTMXAMB7 NA -0.808212879593286 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JVA2NQFF NA 0.553219684309339 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JWSR581E NA 0.344573363184715 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JX449BF5 NA -0.664840765511057 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JX7S9MY7 NA 0.659226231951874 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JXF8A2A6 NA -3.10246158215079 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JXNZYGCR NA 0.403583840926584 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JZRM1S3T NA -2.26565888311568 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_K17VQECG NA 0.738148842670324 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_K2FHZGTK NA -0.6162892288408 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_K2VYFVKZ NA 0.850427809765432 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_K3ER45RV NA -3.03641544336369 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_K5802F84 NA 0.934496817273529 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_K7MVS0Z7 NA 0.12046621048391 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_K81DR8XG NA 0.269058597534973 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KDSTG5YY NA -0.25905918105874 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KEA474HN NA 0.305526463625014 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KK5C8VCK NA -1.34903892529129 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KM2EX0K6 NA 0.689950138862262 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KN92S7YQ NA -1.76892571120592 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KPT2WPHW NA 1.56645793316159 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KQ6ZW085 NA 1.58300660909277 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KSKZ9J7J NA -0.592769475037234 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KVAJYZ6F NA 0.0513696709150773 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KVV7001W NA 0.121356301948548 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KX6J8TRK NA 0.930149003825249 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KXCY5BN5 NA -1.0574067239818 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KXH37MPN NA 0.958741399535621 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KXMYBQ6N NA 1.16316501394728 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KYF0Q0E7 NA 0.918315631460946 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KZPR01BD NA 2.04607572479614 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_M026T44Q NA 0.403583840926584 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_M0QYNVK8 NA 0.783191009913265 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_M15PW2N0 NA 0.606193530502364 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_M1PVEHCM NA 2.21641855169033 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_M1T1K5WV NA -2.37425774253661 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_M4NVX721 NA 1.59733624752471 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 37 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_M4TTKPNR NA 0.970642485290399 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_M7QJ8VF0 NA -0.0114058817481687 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_M85CXHDV NA 0.852901247479905 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_M86ECPHK NA -4.24461620938974 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_M8M56Z4Y NA 1.11167271934929 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_MA2T7ET1 NA 3.27628925667564 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_MB7WN0ZB NA -0.304154538029433 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_MBSTWZA6 NA 0.163234805997183 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_MD3DT41J NA 0.437950961058709 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_MDBT7S5Z NA 0.501781146147449 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ME3HKN2C NA 1.45522505241025 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_MF47B9ZW NA 2.05525398878111 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_MF9X3PKH NA 0.948189555847963 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_MKM0EEN1 NA 0.542462975825604 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_MKP2Y41Z NA 0.535098796681861 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_MM20BVW9 NA 1.16379464000069 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_MMNRZ1EQ NA -0.61814821817454 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_MN5XVP5A NA -0.356856326021482 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_MV6ASWV9 NA 0.308176279951239 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_MVW01FPB NA 1.00097973114136 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_MWWZBQ60 NA 0.396322281060841 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_MY9D8XZ1 NA 0.437216756461472 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_N0877CX1 NA 1.17836590742479 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_N1E0H8YQ NA -0.309542088221264 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_N5B2CZMH NA 0.774240830174774 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_N5DVEJXT NA -3.27318038680601 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_N6NE6B3W NA 1.91618170842311 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_N8J1DP02 NA 0.592218308490506 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NB5XWMJT NA 1.65868815788886 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 87 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NDC69214 NA 0.22342188307591 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NDN62H0S NA 1.00410430532464 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NFRXNAFE NA 1.35788435579077 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NH7K4CD9 NA 0.562092364361683 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NKRYMHEP NA -1.24779215708967 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NNPEC7W1 NA 2.07671375753027 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NPQJ20KX NA 0.848903843348381 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NQB91P48 NA 0.0606288845483663 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NR3P3GN2 NA 0.308441026935785 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NRFQEQKP NA 0.880801241910532 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NRPG5K4K NA 1.18132701801005 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 105 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NT9NZYFD NA 0.603098171485381 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NVKGSMXS NA 2.04119039860456 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NYS8TRCB NA 1.23990735695626 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NZ71XCG3 NA -0.641093014839384 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_P277RYX5 NA 0.23425812210093 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_P39SQPTS NA 0.589542845293096 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_P44PE00R NA 2.44975073124797 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_P4D8Y3S8 NA -3.11726963647363 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_P4NX9MPA NA 1.40612067615035 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_P78SMRBS NA 0.937750151464247 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_PEP9NZXN NA 0.349744694714004 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_PGHK1JRW NA 0.160340663709099 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_PJPGVD62 NA -0.01720403336251 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_PK18H7E7 NA 0.886399411501397 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_PKW05VZV NA 1.74070934633147 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_PN2CE34A NA -0.263550965292294 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_PQ6QEVE8 NA 1.46311540401645 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_PQ7CQFYR NA 1.15843512004936 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_PQVTB6BB NA 0.24941967002048 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_PRAEF32W NA 1.15068025446738 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_PSW27ZTE NA 0.955350732450709 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_PZVHMSYN NA 1.02906030050995 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_Q3TBCK4V NA 0.232318405851254 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_Q5WZYWCT NA 1.66531432625743 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_Q79NP5YY NA 0.652582538017046 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_Q9V7A95C NA 0.00809277804637612 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QAG1RDXN NA 1.34468479549413 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QB7YGKN1 NA -0.184517972950284 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QB84TBA3 NA 1.77611920040861 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QC3XCE6X NA 1.21401016440648 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QEYPFYHD NA -1.34758917584711 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QF5VVZX5 NA 1.78164119450536 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QHS3V0GP NA 0.398829890386238 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QNAQGAV6 NA 1.5781206325685 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 61 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QP6MSKRE NA -0.533412086445458 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QPPPGYP4 NA -1.60426980379542 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QRDT19KS NA -1.29552930564716 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QRNSKFMS NA 0.948727726972773 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QSTAVWGE NA 2.90162350614165 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QT3NZ2YZ NA -0.428616097245712 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QTSXW7DA NA 0.664351369221544 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QV51J756 NA 1.76785579382299 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QWNBZ9RJ NA 1.4560157931168 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QWTE1CWR NA 0.130525817610304 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QX12J6W1 NA 2.33825952503876 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QXKRN6CR NA 1.07421221829375 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_QYPHA40N NA 0.341462741665699 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_R244Z0WX NA 1.38107650656174 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_R634WKN7 NA 1.03740882325245 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_R6WNEEE4 NA -0.18773629460795 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_R7HZCZ8B NA 1.732599771524 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 136 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_RB2S0KDF NA 2.41511260890404 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_RCC8BXVE NA 1.36346921901066 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_RCCN63K6 NA 0.225372113585685 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_RCFQ31XF NA 1.25397144883395 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_RD4D5F9F NA -1.10048133121241 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_RFMQ7T0T NA -0.447789672044125 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_RGPSEMHC NA 0.998371377307282 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_RGSMX7QD NA 1.14782232040697 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_RHD7XPNP NA 0.71039492044044 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_RSRPX3S8 NA -1.18294334209999 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_RWJZFTP9 NA -0.541381235678651 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_RXN5T5YT NA -0.316494971164216 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_S0175QKX NA -0.895574258027591 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_S1KK7XRH NA 1.13024843100023 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_S1M423AB NA -2.22069734158154 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_S2TA8R29 NA 1.71085192987319 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 41 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_S458NMKH NA 1.45667445342672 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 56 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_S4V9E1XJ NA 0.813067617371676 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_S50KQEXV NA 0.674130132593959 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_S5P8VTN5 NA 1.3938515220817 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_S69QZAJR NA 0.367717375058176 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_S6NJRR5W NA 0.592886494824267 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_S71RJ8DH NA 0.909705842909755 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_S7CZY2CH NA 1.6693698373 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_S9929Z8B NA 1.07736672106466 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_SBFNFZ8B NA 2.06474536049554 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_SDA4RMMG NA 0.951953060992828 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_SDZY6RZ3 NA 1.03434694094478 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_SFKZSJN1 NA 1.70089132024566 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 83 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_SHMC4902 NA 0.434767038049218 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_SKGJ5SY9 NA -1.00598570763717 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_SM8VQFPD NA 1.78174928379255 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_SQX5E15Z NA 0.60884206672353 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_SXCZ3CXN NA -0.474843327690515 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_SXRS2P6T NA 0.494704952938218 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_T0RKFEKR NA 0.800946568866458 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_T1DVKKJB NA 1.04959966822703 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_T1W4JA94 NA 0.495413943812591 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_T1YHK6B7 NA 1.56707382556269 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_T2QPMZCM NA 1.75032224766718 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_T3H5AY8A NA 0.252435280002239 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_T4JFN54G NA 0.517242431076679 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_T4P3J13C NA 0.790908630387652 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_T55Y4Z0Y NA 2.00365551940727 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 41 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_TA9WP4TH NA -1.60173097030248 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_TAHV8N04 NA -1.01129227819898 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_TBWYAFSM NA 2.19931826676426 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_TCGEZJ5F NA 1.93292902394617 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_TD1ZEQ7R NA 1.48966294532608 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_TDEFAPNH NA 1.15590693718948 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_TG93XC55 NA 2.07942174448402 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_TGS109T3 NA 1.06705066098829 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_TK84K675 NA 0.889935088839744 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_TM9MH0RP NA 2.28985485952531 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 80 1 high [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_TMTV769C NA 1.35157863316122 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_TRKH2SPE NA 0.295151195111048 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_TV5B86ZD NA 0.999241288280083 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_TXY8QYWA NA 0.481890576409494 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_TXZ7KHTQ NA 1.72880901729108 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_TYAYZ9ZW NA -2.30408915101155 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_V0Q1G94N NA 0.939915471322266 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_V3REENH9 NA 1.18738843615122 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_V3Z3DB4N NA 0.869735609471351 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_V4W81SFC NA -0.0379868174506831 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_V72GX2AZ NA 1.24680481162175 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_V7BJM89K NA 1.4627217841419 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 121 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_V89HGTET NA 0.759013496596987 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_V96WVE3Z NA 0.947471720315376 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_V9HVBBDW NA -0.136636867632813 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VA5T4KAA NA -0.417876918814331 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VARR255N NA 1.33832816554317 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VF5XWFXD NA 0.762230987561543 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VJVDJABP NA -0.695259557154343 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VMEX27TN NA -1.46469132775555 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VMMJYN8Z NA 1.82737135155359 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 151 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VNE0ZPBS NA 1.44092632362792 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VNK9XYV9 NA -1.29693386648225 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VNWKNRY4 NA 0.608180332400409 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VP5Y45Z7 NA 0.863324827345033 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VPBMDMQX NA 0.12757349113471 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VPMKHW9X NA 2.03443770687916 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VR7FR1NE NA 1.08778330880405 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VT6C6N6K NA -1.36214449772322 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VTJ9ESSV NA 0.151627555015228 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VVFBW0YH NA -0.781805332136291 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VVTHDRBD NA 0.963014380431105 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VW85Q4XJ NA 1.51667793592297 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 68 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_VXEFKW5P NA 0.623551852116203 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_W18SF91A NA 1.12751563548858 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_W3R88RFP NA 1.88308155042839 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_W4DB5RP1 NA 0.122542341760486 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_W4HGV6E7 NA 1.10353042233458 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 71 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_W60RQAKK NA 0.529553943093341 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_W644VEVE NA -0.754804182508979 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_W6AC5J3C NA 1.62800158874886 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 70 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_W7FP2G3F NA 0.541084701467353 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_W97QQYKQ NA 1.2153833882667 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_W9AT0MR7 NA 0.0308140384495702 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_W9N9844Q NA -0.520653568944597 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WAXJY4XQ NA 0.671797016332298 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WCRKYV0T NA 2.09932346556598 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WE3Q8A73 NA -0.961271557890411 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WFD0GE5X NA 1.07603924670856 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WG203ECV NA 0.83204634938438 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WGK8ZMVA NA -0.0796867010013092 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WH5HDE0A NA 1.09829811844742 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WH8G4VFB NA -0.0126925946148357 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WJ9H4NZZ NA 0.362089952144717 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WKESC3XN NA 0.70728204214464 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WMEHNDSK NA 0.47305235840921 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WRHDP7WF NA -0.32620077436763 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WSQMAA33 NA -3.60323163447463 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WV0S8N4M NA 0.432804632879284 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WVW3W6ZB NA 1.7599888203491 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WWKNJSJ5 NA -0.879143145970277 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WYERXS4G NA 0.0603210824256509 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_WYG77VVP NA 0.576999481254237 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_X0F9AYEC NA 1.39083842322632 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_X16PENSA NA 1.11021007751174 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_X4X1SFSE NA 1.92284159258643 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_X59HSFGG NA 1.33365097327908 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_X67GTEM6 NA -0.226122560842469 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_X91K8KMG NA -0.459993253296089 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_XBQZYS8G NA 1.77057860449339 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_XF0ZX2B3 NA 0.420238955321484 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_XGSA3GQE NA 0.715156587139983 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_XJTW0P8P NA 2.49008088618485 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 72 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_XKKB4MZV NA 0.164679969641633 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_XQ5SFW35 NA 0.26743094709246 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_XQYHPBFS NA -0.965286619854837 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_Y0PCBNJV NA 0.641593858570612 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_Y3G1X98S NA 0.891235793247534 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_Y7F9E2E9 NA 0.538094472227084 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_Y8D1F5WW NA -1.92493752168796 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_YA8RBGD8 NA 0.526774490572261 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_YB2RXRHT NA 1.57211546280668 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_YCREDZTJ NA 1.28613261876932 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_YE1MAQYJ NA 0.363114553104767 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_YEQVW4ND NA 1.42623388629879 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_YEW22W35 NA -0.0643401252902913 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_YG0A13JH NA 0.550708455142578 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_YMAJC22S NA 0.901419978343155 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_YNEQJ6AH NA -0.0360272374278611 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_YVMEEBKC NA 0.48403325106172 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_YY5B2XDD NA 0.11124028205414 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_YZ2Z1Q6Y NA 0.589096511331623 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_Z0AVVB1V NA 0.307646658102216 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_Z1A875MW NA 1.504953406289 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_Z45HD492 NA -0.303386326601206 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_Z6BWR941 NA 1.10009860098949 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_Z6MC4N8D NA 0.635963404541878 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_Z7Y2466H NA 0.761025165925472 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_Z8YZ6QGS NA 0.987896398871931 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ZF34SJGN NA -1.87826068815873 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ZH1FBX50 NA 1.82989251033493 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ZJZXDPTP NA 1.12671100720683 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ZR96A4FH NA 1.2405082852194 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ZRM0W01M NA 1.34736134716363 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ZV1P6W9C NA 1.97093799446146 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ZV68CES9 NA 0.466572741474784 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ZV9Z3SY6 NA 0.603540722446731 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ZVWE73JZ NA 1.72579247620001 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ZVZDDW2G NA 0.541314494082177 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ZWR9W4FX NA -1.32957431187138 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ZXYDSBM9 NA -0.790044500964712 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ZZMYDZJW NA 0.0914238900770306 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ZZPBANDD NA 1.22980903219882 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ZZWMD6FA NA 2.01860396386615 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 57 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_014EVM2D NA 1.34947134185702 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_02NZT8CE NA 0.819482901322291 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_044XZ8ST NA 1.34904955941134 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 61 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_052PZFMK NA 0.320836308881881 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_063ERW0R NA 0.945136588782071 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_06AMMCXR NA -0.845163035856809 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_07ANYSYQ NA 1.33804507765298 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_09R7GDA7 NA 1.80929535425522 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_09Z7TC35 NA -0.0613542110579309 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_0BXY0F9N NA 0.57294728491451 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_0C7VZC0A NA 1.65880463681231 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_0HW7W7SD NA -1.38941619741803 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_0J9SHHSC NA 0.0257919257294979 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_0QYS36NR NA -0.571388228011334 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 1 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_0SCXXM6N NA 1.12574493338291 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_0T17SY47 NA 0.41056471207971 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_0WVJYM9R NA 0.576999481254237 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_0X9EGHY2 NA 1.19249993822183 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_0XEG6SNV NA 2.1543518839316 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_0Y66ZBWE NA 0.845851667779037 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_13CGKADW NA 1.52402676233874 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_15ETQ0E4 NA -2.2681931527048 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_17WYVEEC NA 0.102262417852409 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_196BBNEJ NA 0.640079862216022 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1A6MQ9ZA NA 0.792290019210295 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1AYRM596 NA -1.22006925361671 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1D6PZNKN NA 0.92742577238807 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1EN5V3XW NA 1.7799107991454 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1G3WYEN3 NA 1.90709278910137 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 59 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1HQ76V6D NA 1.79058851940156 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1J2WQ08M NA -1.58072505721941 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1JDG6JV5 NA -0.0282121810870386 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1KYGSMA7 NA 0.55458783132121 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1NPD7PVG NA 0.983687656271448 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1QNTEZPS NA -0.295723882563386 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1QXEC43H NA -0.213712119872143 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1RT76ANT NA 2.34087743588075 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1RXZ3BP7 NA 0.575199737523371 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1T19NFJ8 NA 1.43533196232303 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1TPWFSK6 NA 0.71412261423994 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1TWCV047 NA 0.925243936156642 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1XJ73KBQ NA -3.92726572473975 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_1ZVXF5FE NA 1.25665090743024 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_21RE8W46 NA 1.58166441182868 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_24AHZ9ZW NA 0.73631308062182 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_258RRGDM NA 1.49559040938376 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_25T139TX NA 2.10297280906358 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_264RCK7G NA 0.295951620451494 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_273HKCT4 NA 0.259541182811029 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_27QE6BV7 NA 1.26880239367051 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_29CPJ040 NA 1.3605395305142 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_2A162JH9 NA -1.44381772339886 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_2A5R9MEJ NA 0.759214774286516 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_2ADZNNV4 NA 1.43306215712902 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 81 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_2AR3AP0N NA 1.28744695098056 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_2EMW8ZG3 NA 1.73582617215952 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_2EN3X6HB NA 0.781801954577578 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_2KJ2YAZR NA 0.730588682318541 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_2R9TCR03 NA 1.46114636195447 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_2SFTWNVE NA -0.0243185340417173 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_2WPQ8YCW NA 0.200967737228094 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_2XD3MNKD NA 1.12558386589633 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_2Z1MKS84 NA -2.48474084089671 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_30VC3R2Q NA 0.396824108871883 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_34201DKZ NA 0.74891807674837 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 93 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_37GTVG4N NA 0.750942124060086 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 64 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_398KYV92 NA 1.31495161598611 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_399RPKC9 NA 0.891421524221469 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_39CGACC7 NA 0.930511760914926 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3BVVWHP5 NA 2.15908470615183 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3EVSN5QD NA 2.18330888210668 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3F4FQJMR NA 1.65109927901527 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3F5PR9GS NA -0.385670037599962 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3G3KWY18 NA 0.849284967353777 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 65 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3H71BH6Q NA 1.08051518528948 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3KASVCSQ NA 1.88043710878604 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3MS8WVNR NA 1.35508479658221 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3MYEMXPQ NA -1.621296256447 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3NNQ6PSB NA 0.778423642407554 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3NWQXPQV NA -2.43627877206768 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3P20Q2C3 NA 1.0387678323262 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3PYESPHA NA 2.05388051008924 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3Q0GTSYH NA 0.393810842738193 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3V3KE3VT NA -0.420348974346733 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3W07B2TG NA 1.53373250603579 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 46 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3X9WMZGJ NA 1.11248473646671 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_3XY76V8T NA 1.28876023373155 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_401R3KV0 NA 0.862757968598105 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_40MP5BWR NA 0.703330586476467 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_42DY6WS7 NA 0.504603121054084 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_42Y3YANN NA 0.0950446744516571 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_44A3ES23 NA 0.642242287768024 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_470DYRJQ NA 1.34228628845575 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_478TN841 NA 0.601105217254139 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_47SJZ3PH NA 1.37375148678156 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_49852ZBH NA 0.66733367400589 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_49BQS7Z6 NA 1.32054085892679 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 55 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_49FQXT2E NA 1.63569754213917 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_49VCQD19 NA -0.408025685143522 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4A45GGSW NA 0.138764249479575 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4B0BAVTX NA 1.06538070385637 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4BWB0FA0 NA 1.34299209485972 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 120 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4C4MZ4NT NA -0.369999982613883 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4CP4T22V NA -1.9975345977796 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4E1G7E3G NA 1.0338360725953 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4FZS7TX4 NA 0.602655501414634 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4HQ3T2NC NA 0.395318165866081 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4NF35AF6 NA 0.374851815038403 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4PH1MBGR NA -0.993085714936512 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4QW2S1Q8 NA -0.338316062550575 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4SCWT0FX NA -0.195629916660388 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4T0HPZDC NA -0.151275469624287 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4W1DBAN4 NA 1.73170861504413 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4W68NV3M NA -1.929059680833 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4Y6BCYK5 NA 0.997326876443687 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4Z2F4P9N NA -0.565523010358968 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_51RA1PGE NA 0.94315811547037 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_52426AMF NA 1.00653043250895 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_52C576HH NA 0.96692155147645 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_52DAPP1Y NA 0.689320251586575 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_52MPKTJH NA 1.91398898636555 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_53CTGDQG NA 2.44354633337994 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_53GQKVEX NA 0.0959486264600833 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_53M8PP88 NA -0.688451040947146 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_55JW3HFM NA 0.590658150576175 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_55P8HPYD NA 0.406329860691307 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_593HEWBF NA 1.08349239160148 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_5965SFPZ NA 1.05532519686033 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_5CMGN56B NA 0.787746806728969 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_5JM573JC NA 0.753973532372789 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_5K3R0F5D NA 1.67549206607838 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_5NWDARXG NA 1.1160528567927 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_5P1TN10Z NA 1.09731520568633 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_5P3CZQV8 NA -0.562373458181785 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_5PEFNDCY NA 0.845087738068169 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 52 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_5PJCHF6V NA -1.89434629938341 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_5PV5N4HQ NA 0.435992353339393 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_5YJEPPTP NA 0.489021996620598 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_60K3EQ9S NA 1.22572196578906 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_61E80SD6 NA 0.307381783210278 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_66ABA973 NA 0.57474949371056 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_66HQ3E4Z NA 0.413299111110071 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_67Z63A2K NA 1.33960145843213 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_680K119G NA 1.65191822731725 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_68BW2163 NA 0.0166500759361335 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_699TN5RN NA 0.487360762157818 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_6G6C7VPX NA 0.198139291753856 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_6H1C1ME9 NA 0.983863235736565 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_6HTK4YJP NA -2.40428703646751 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_6MY8W3H0 NA 1.68239549966733 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_6MZ7FRZH NA 1.77155771394066 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_6N3AFF66 NA 0.259813874619318 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_6NTXGQAC NA -0.099582319846426 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_6P50QTPP NA 1.36416599539809 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 56 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_6VF6VPCG NA 1.13425901732769 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_6WP1FHTE NA 0.779219163892437 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_74FS6GMW NA -0.952700717036529 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_769BDPDB NA 0.803691398318742 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_775HDFNY NA 0.774041383059034 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_77CDMEY4 NA 0.487598184119679 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_78QX3XDF NA 0.280137973391775 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_7B89YR6K NA 2.34402879633991 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_7BTZQKYY NA 1.16426670141639 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 93 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_7C40TRCY NA -0.31610792783076 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_7FWZ518S NA 0.238683187861936 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_7N0B2CY1 NA 1.97555589353042 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_7P83Z28P NA 0.763837375810769 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_7T1J3KET NA 1.01050846007227 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_7XQRH69M NA 0.0220152521115831 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_7XRN3CFX NA 1.49893128995326 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 62 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_7Z93ZYMS NA 0.400582944905535 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_7ZV3DPGT NA -0.390926742331116 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_81SP2HX4 NA -0.47654904797607 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_850BAHH9 NA -2.24427380873787 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_86Q14TZG NA 0.769047328581641 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_8D0NYM46 NA -0.8030014029963 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_8F9BDWY4 NA 0.0606288845483663 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_8GW1TMV2 NA -0.35012612266142 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_8J3B6ZB6 NA 0.20350918605403 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_8NY9J9NQ NA 1.46180297126413 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_8PNA0V6R NA 0.560503352511426 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_8RCR7Y4B NA 0.734883847775938 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_8RHPJ740 NA 0.343796259159896 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_8S86CM61 NA -2.42508049467817 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_8SKZ7BRN NA -0.00626907292565134 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_8VAZSJEN NA 1.36736737030738 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_8Z3SCKB5 NA 1.44185686998254 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_8ZP3CBQA NA -0.292668872373821 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_90B22NGP NA 2.16927843873344 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_912NX4Y0 NA 0.997152728459202 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_91VYM11A NA 1.7803435686882 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_92VDQ0NE NA 1.58970121482658 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_94MT16N2 NA 1.39028999353203 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_9755PSCS NA 1.16536765144225 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_97M1E2DW NA -0.176677374346073 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_983Z6CA6 NA -0.438591810240421 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_996ZS2A4 NA -1.71369699787575 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_9BJARSX3 NA 0.994189388052384 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_9CA93S6D NA 0.16496885005652 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_9DFBHHB5 NA 0.91959409296172 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_9DZ253JY NA -1.83676953492664 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_9F09XV62 NA 0.764038064071396 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_9FHSNVS0 NA 0.964436244049315 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_9HSGV9TJ NA 1.75307421537733 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_9M5XJ10G NA 0.574073896807271 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_9NJHQE9F NA -0.47654904797607 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_9NZ2D6AD NA -0.0181723823088984 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_9PB3XH5D NA 1.06788500414925 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_9Q6Z6VJC NA 0.199271253696632 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_9SJWWYQ4 NA 1.08547420604501 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_A13BMEF5 NA 0.558685457175288 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_A14Z8BBK NA -0.184160770073881 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_A1VEGWTR NA 0.64289046142683 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_A3QZB9Y2 NA -0.241953426749211 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_A46RDWGM NA 0.201815323249393 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_A7MC2KR2 NA 0.903633626911404 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_A7Q8G0Y1 NA 0.515142612968729 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_A87NPZAP NA -1.13640926537673 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ABYF92Z9 NA 0.772245269825709 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_AD4JPN9Q NA 1.33279914384031 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 46 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_AG3D3435 NA 1.96862417372169 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_AG4H9S3J NA 0.849475496243413 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_AGTPCRR4 NA 0.515842850247993 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_AHEFXG7W NA 0.70832032299342 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_AJ6X83G5 NA 2.17141197209518 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_AKRHBPNZ NA 1.35298199556541 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 44 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_AM70R8RG NA 0.16583518699408 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_AMQGM1V9 NA 2.1016386224956 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_AMZ70B6F NA -0.303770387464115 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_AP0SZ364 NA 0.776632310985684 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ARBQDTT5 NA 1.7133326854535 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ARFQ1WG3 NA 0.134355936366346 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_AVYNZHSB NA 1.09321340138092 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_AWH9757B NA 0.606635249489289 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_B0SVFK4P NA 0.852901247479905 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_B1C6GZ84 NA -0.518901514837048 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_B1HVNV0T NA 1.93302761472324 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_B3M5SGPA NA 1.27204733186184 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_B61168DE NA -2.5723820666496 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_B7GEH89C NA 0.689950138862262 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_B7QS4DHK NA 0.0817293141341181 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_B7X8VXQ3 NA 1.26258967769523 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_B8T7M0WV NA 0.659440098493744 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_BA6AZWB3 NA 1.42287631227946 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_BB0YW800 NA 1.22723687852205 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_BC936YNZ NA 1.37014611845597 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_BHR08WGW NA -0.614432338281802 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_BJDNWMJH NA 2.601915953715 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_BKQZ550R NA 0.477596834814635 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_BKR4E30C NA 0.227876159699295 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_BN986DF6 NA 0.2130749300361 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_BPSTSCBJ NA 0.705827346937609 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_BPWEFR89 NA 0.800946568866458 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_BSV07M7Z NA -1.44304969133357 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_BVSW4GTG NA -0.568227435146859 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_BWBDH9GM NA -1.38570430092509 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_C05FKR8X NA 0.956600738967151 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_C41DJZ1F NA -0.137330997475541 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_C51RB0YR NA 1.453114550059 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_C6SKJG3N NA 0.61851703955045 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_C6ZZ3FY5 NA 2.09985802186924 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_C7A2TYAC NA -0.231627666856442 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_C7N3J4NW NA 1.58019894635787 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_C80S5N37 NA 0.866721883226526 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_CB6VK7PB NA -0.161811960737733 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_CGB2WS2A NA 1.23132018687875 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_CQSAJ7BF NA 1.08992457677392 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_CREQ97QC NA 1.84014732040465 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_CS170P7T NA 1.86036405982265 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_CTR5X93B NA 0.852901247479905 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_CVGFNCBJ NA 1.38974138090589 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_CW9QV8AG NA 1.51502627085867 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_CZ3ER8DY NA 1.03366574787729 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_CZ82ANWP NA 0.0439245855299003 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_D0BGESQF NA 0.133472854123423 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_D0RDN4K5 NA 0.894761100268177 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_D144EJRQ NA -0.187378392171997 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_D29RPBSZ NA 0.485460151646819 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_D2K9C7XR NA 0.384737779128374 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_D3YBV7KB NA 0.821228190142709 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 54 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_D8N31T39 NA 1.01378741526568 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_DBDXCXT5 NA 0.452809141173327 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_DEHJF4C7 NA 1.1077694469438 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_DFWFBYSN NA -0.835051348249805 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_DGTPWJ59 NA -1.82995497385202 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_DHA5FMVW NA -0.983186378681404 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_DMZP9G1H NA 1.77177521468653 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_DPF1CX0G NA 0.802319556181955 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_DSS3S5XD NA 0.375360235641504 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_DV86M0Y7 NA 1.22784245313785 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_DVCQ8XDZ NA 1.83314329782412 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 52 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_DY88N5ZT NA 2.50991579073885 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_E0N3PTPN NA 1.10662924541603 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_E1CGF3KV NA 1.05515708313422 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_E2Z940S4 NA -3.31817969772348 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_E3BAT4C1 NA -3.04859876305648 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_E4GC9EXR NA 0.643538379748359 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_E4QK839R NA 0.932505496022385 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_E60JZ9Z3 NA 0.285784003193869 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_E94QRJDW NA 0.882295951215204 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_EF775B3K NA 1.65402222387187 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_EFE4YEK3 NA -1.24438619058378 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_EFEZB0ZH NA 0.306056768526571 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_EHVYJAVA NA 0.522131606365857 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_EJ9JKM1C NA -0.607487610280926 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_EK5PCKY0 NA -2.39193598490033 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_EMYET8F4 NA 0.588873298921981 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_EN2VK7NY NA 0.270684638831952 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ERJAJ0KA NA 0.223700629053686 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ERWT0ZWE NA -0.208266554900043 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ET8CJXSF NA 1.22162471799745 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_EXGBH3TD NA 0.864835496234639 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_EYSS0ZDS NA 1.6147754363513 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_EYYMKWB7 NA 1.82484632225254 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_F4E8R9VY NA 0.513273854764074 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_F6V1Y4QS NA 0.413299111110071 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_F6Z5HFWH NA -0.949853666580203 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_F8N6CFQE NA 0.605972626514666 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_FAQQ0GCQ NA 0.655586239469015 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_FBJ5Q54N NA 1.7786118068668 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_FCAKKZ20 NA -0.670111606734921 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_FEPRNEXX NA 1.80982672137706 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_FEV5A0HN NA 1.63770440338546 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_FJWZ3M7V NA 0.942978136191542 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_FJZPQZ2C NA 1.19481810722847 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 52 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_FQX1PRAJ NA -0.595977831764639 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_FRZ76GEG NA 0.484509022149195 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_FW5ECXXK NA 0.974708158237359 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_FWMJPKCV NA -0.0465054135025164 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_G00FHF3Q NA -1.69658757881027 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_G23JJAZY NA 2.17141197209518 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_G3RJTBZD NA 0.371797986580212 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_G5QBBHDV NA 1.77155771394066 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_G7AGNB5G NA 0.229821118869356 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_G9XE3N9T NA 1.53473761836586 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GCA4GET3 NA 1.10075283355099 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GCQFGDTX NA 0.0686115876529316 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GE2RVZE6 NA -1.43004772134808 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GG9W3J9Y NA 0.88117504660258 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GHNJ4CYC NA 0.37358007551944 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GJNCYABP NA 0.53417595158096 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GMDQK06Q NA 1.6981642885114 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 69 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GMJBGBWB NA 1.55533224944473 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GNV89A5P NA -1.94148851054091 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GPEGRCCT NA 0.811313642948519 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GR46VD0Q NA 0.430102496954166 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GS1KR5PK NA 1.13905884749853 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GSVCN2XC NA -2.69920715401069 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GTZCFGRZ NA 1.26333051849778 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GV3NZ9QD NA 0.740389772851292 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 59 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GW0GKWMS NA 1.03689890520839 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GWCRMKE6 NA 1.73515916006335 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GYA4V1RD NA 1.00739603993797 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_GYXSDZ56 NA 1.84098163182343 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 57 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_H0QWRJE2 NA 2.18313953072289 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_H1ZS5FMZ NA 0.860867027210316 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_H3FE3TH9 NA 0.316627117491975 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_H4B5Y6S0 NA -1.17574820355542 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_H8A9PSYA NA 0.219514470932514 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_HA20Y4XY NA 0.385748372486086 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_HC44ZA0V NA 1.66508228045598 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_HC5M8JTC NA 0.648066675417231 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 50 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_HCP5C912 NA 1.4870791090584 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_HD4EJYE3 NA -1.44535486429386 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_HF3RNN2T NA -0.754298963448661 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_HHPA8NJ2 NA 0.8923498646186 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_HQ5BJ6MW NA 0.544528224194817 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_HSHN8PBB NA 0.955529362984464 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_HV8PFRBR NA 1.13441923754485 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_HX0S30NE NA 0.23370415084681 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_HZ707C55 NA 0.487598184119679 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_HZE3KYZ1 NA 0.187061642610937 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_HZRM07TW NA -0.551174037012767 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_J1AB8PMA NA -0.252716745878256 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_J483EMFP NA -0.0610227771751103 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_J60G8DMK NA -1.26148699589368 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_J6VKB1VE NA 0.799965161451498 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_J71N7D09 NA 1.67075799940626 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_J8G4SH4Z NA -1.75587214556085 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_J8VX4D17 NA 0.556410258807313 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JCPKYHKY NA -0.0139803148903875 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JFR750KD NA 0.661150030435081 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 44 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JH29M4KG NA 0.972764959792405 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JHGW42S6 NA 0.858405548791634 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JKXA3FQC NA 1.06654985185844 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JMHG7GCN NA 1.00288989838528 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JSPR854S NA -0.705525470523375 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JT82QGXF NA -1.79534781577615 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JTMXAMB7 NA -0.808212879593286 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JVA2NQFF NA 0.553219684309339 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JWSR581E NA 0.344573363184715 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JX449BF5 NA -0.664840765511057 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JX7S9MY7 NA 0.659226231951874 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JXF8A2A6 NA -3.10246158215079 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JXNZYGCR NA 0.403583840926584 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JZRM1S3T NA -2.26565888311568 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_K17VQECG NA 0.738148842670324 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_K2FHZGTK NA -0.6162892288408 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_K2VYFVKZ NA 0.850427809765432 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_K3ER45RV NA -3.03641544336369 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_K5802F84 NA 0.934496817273529 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_K7MVS0Z7 NA 0.12046621048391 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_K81DR8XG NA 0.269058597534973 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KDSTG5YY NA -0.25905918105874 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KEA474HN NA 0.305526463625014 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KK5C8VCK NA -1.34903892529129 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KM2EX0K6 NA 0.689950138862262 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KN92S7YQ NA -1.76892571120592 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KPT2WPHW NA 1.56645793316159 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KQ6ZW085 NA 1.58300660909277 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KSKZ9J7J NA -0.592769475037234 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KVAJYZ6F NA 0.0513696709150773 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KVV7001W NA 0.121356301948548 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KX6J8TRK NA 0.930149003825249 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KXCY5BN5 NA -1.0574067239818 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KXH37MPN NA 0.958741399535621 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KXMYBQ6N NA 1.16316501394728 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KYF0Q0E7 NA 0.918315631460946 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KZPR01BD NA 2.04607572479614 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_M026T44Q NA 0.403583840926584 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_M0QYNVK8 NA 0.783191009913265 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_M15PW2N0 NA 0.606193530502364 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_M1PVEHCM NA 2.21641855169033 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_M1T1K5WV NA -2.37425774253661 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_M4NVX721 NA 1.59733624752471 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 37 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_M4TTKPNR NA 0.970642485290399 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_M7QJ8VF0 NA -0.0114058817481687 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_M85CXHDV NA 0.852901247479905 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_M86ECPHK NA -4.24461620938974 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_M8M56Z4Y NA 1.11167271934929 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_MA2T7ET1 NA 3.27628925667564 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_MB7WN0ZB NA -0.304154538029433 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_MBSTWZA6 NA 0.163234805997183 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_MD3DT41J NA 0.437950961058709 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_MDBT7S5Z NA 0.501781146147449 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ME3HKN2C NA 1.45522505241025 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_MF47B9ZW NA 2.05525398878111 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_MF9X3PKH NA 0.948189555847963 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_MKM0EEN1 NA 0.542462975825604 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_MKP2Y41Z NA 0.535098796681861 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_MM20BVW9 NA 1.16379464000069 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_MMNRZ1EQ NA -0.61814821817454 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_MN5XVP5A NA -0.356856326021482 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_MV6ASWV9 NA 0.308176279951239 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_MVW01FPB NA 1.00097973114136 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_MWWZBQ60 NA 0.396322281060841 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_MY9D8XZ1 NA 0.437216756461472 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_N0877CX1 NA 1.17836590742479 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_N1E0H8YQ NA -0.309542088221264 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_N5B2CZMH NA 0.774240830174774 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_N5DVEJXT NA -3.27318038680601 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_N6NE6B3W NA 1.91618170842311 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_N8J1DP02 NA 0.592218308490506 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NB5XWMJT NA 1.65868815788886 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 87 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NDN62H0S NA 1.00410430532464 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NFRXNAFE NA 1.35788435579077 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NH7K4CD9 NA 0.562092364361683 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NKRYMHEP NA -1.24779215708967 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NNPEC7W1 NA 2.07671375753027 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NPQJ20KX NA 0.848903843348381 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NQB91P48 NA 0.0606288845483663 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NR3P3GN2 NA 0.308441026935785 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NRFQEQKP NA 0.880801241910532 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NRPG5K4K NA 1.18132701801005 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 105 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NT9NZYFD NA 0.603098171485381 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NVKGSMXS NA 2.04119039860456 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NYS8TRCB NA 1.23990735695626 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NZ71XCG3 NA -0.641093014839384 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_P277RYX5 NA 0.23425812210093 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_P39SQPTS NA 0.589542845293096 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_P44PE00R NA 2.44975073124797 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_P4NX9MPA NA 1.40612067615035 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_P78SMRBS NA 0.937750151464247 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_PEP9NZXN NA 0.349744694714004 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_PGHK1JRW NA 0.160340663709099 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_PJPGVD62 NA -0.01720403336251 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_PK18H7E7 NA 0.886399411501397 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_PKW05VZV NA 1.74070934633147 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_PN2CE34A NA -0.263550965292294 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_PQ6QEVE8 NA 1.46311540401645 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_PQ7CQFYR NA 1.15843512004936 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_PQVTB6BB NA 0.24941967002048 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_PRAEF32W NA 1.15068025446738 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_PSW27ZTE NA 0.955350732450709 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_PZVHMSYN NA 1.02906030050995 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_Q3TBCK4V NA 0.232318405851254 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_Q5WZYWCT NA 1.66531432625743 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_Q79NP5YY NA 0.652582538017046 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_Q9V7A95C NA 0.00809277804637612 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QAG1RDXN NA 1.34468479549413 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QB7YGKN1 NA -0.184517972950284 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QB84TBA3 NA 1.77611920040861 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QC3XCE6X NA 1.21401016440648 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QEYPFYHD NA -1.34758917584711 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QF5VVZX5 NA 1.78164119450536 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QHS3V0GP NA 0.398829890386238 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QNAQGAV6 NA 1.5781206325685 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 61 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QP6MSKRE NA -0.533412086445458 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QPPPGYP4 NA -1.60426980379542 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QRDT19KS NA -1.29552930564716 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QRNSKFMS NA 0.948727726972773 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QSTAVWGE NA 2.90162350614165 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QT3NZ2YZ NA -0.428616097245712 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QTSXW7DA NA 0.664351369221544 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QV51J756 NA 1.76785579382299 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QWNBZ9RJ NA 1.4560157931168 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QWTE1CWR NA 0.130525817610304 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QX12J6W1 NA 2.33825952503876 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QXKRN6CR NA 1.07421221829375 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_QYPHA40N NA 0.341462741665699 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_R244Z0WX NA 1.38107650656174 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_R634WKN7 NA 1.03740882325245 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_R6WNEEE4 NA -0.18773629460795 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_R7HZCZ8B NA 1.732599771524 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 136 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_RB2S0KDF NA 2.41511260890404 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_RCC8BXVE NA 1.36346921901066 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_RCCN63K6 NA 0.225372113585685 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_RCFQ31XF NA 1.25397144883395 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_RD4D5F9F NA -1.10048133121241 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_RFMQ7T0T NA -0.447789672044125 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_RGPSEMHC NA 0.998371377307282 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_RGSMX7QD NA 1.14782232040697 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_RHD7XPNP NA 0.71039492044044 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_RSRPX3S8 NA -1.18294334209999 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_RWJZFTP9 NA -0.541381235678651 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_RXN5T5YT NA -0.316494971164216 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_S0175QKX NA -0.895574258027591 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_S1KK7XRH NA 1.13024843100023 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_S1M423AB NA -2.22069734158154 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_S2TA8R29 NA 1.71085192987319 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 41 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_S458NMKH NA 1.45667445342672 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 56 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_S4V9E1XJ NA 0.813067617371676 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_S50KQEXV NA 0.674130132593959 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_S5P8VTN5 NA 1.3938515220817 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_S69QZAJR NA 0.367717375058176 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_S6NJRR5W NA 0.592886494824267 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_S71RJ8DH NA 0.909705842909755 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_S7CZY2CH NA 1.6693698373 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_S9929Z8B NA 1.07736672106466 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_SBFNFZ8B NA 2.06474536049554 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_SDA4RMMG NA 0.951953060992828 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_SDZY6RZ3 NA 1.03434694094478 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_SFKZSJN1 NA 1.70089132024566 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 83 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_SHMC4902 NA 0.434767038049218 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_SKGJ5SY9 NA -1.00598570763717 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_SM8VQFPD NA 1.78174928379255 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_SQX5E15Z NA 0.60884206672353 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_SXCZ3CXN NA -0.474843327690515 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_SXRS2P6T NA 0.494704952938218 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_T0RKFEKR NA 0.800946568866458 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_T1DVKKJB NA 1.04959966822703 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_T1W4JA94 NA 0.495413943812591 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_T1YHK6B7 NA 1.56707382556269 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_T2QPMZCM NA 1.75032224766718 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_T3H5AY8A NA 0.252435280002239 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_T4JFN54G NA 0.517242431076679 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_T4P3J13C NA 0.790908630387652 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_T55Y4Z0Y NA 2.00365551940727 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 41 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_TAHV8N04 NA -1.01129227819898 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_TBWYAFSM NA 2.19931826676426 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_TCGEZJ5F NA 1.93292902394617 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_TD1ZEQ7R NA 1.48966294532608 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_TDEFAPNH NA 1.15590693718948 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_TG93XC55 NA 2.07942174448402 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_TGS109T3 NA 1.06705066098829 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_TK84K675 NA 0.889935088839744 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_TM9MH0RP NA 2.28985485952531 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 80 1 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_TMTV769C NA 1.35157863316122 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_TRKH2SPE NA 0.295151195111048 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_TV5B86ZD NA 0.999241288280083 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_TXY8QYWA NA 0.481890576409494 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_TXZ7KHTQ NA 1.72880901729108 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_TYAYZ9ZW NA -2.30408915101155 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_V0Q1G94N NA 0.939915471322266 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_V3REENH9 NA 1.18738843615122 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_V3Z3DB4N NA 0.869735609471351 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_V4W81SFC NA -0.0379868174506831 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_V72GX2AZ NA 1.24680481162175 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_V7BJM89K NA 1.4627217841419 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 121 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_V89HGTET NA 0.759013496596987 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_V96WVE3Z NA 0.947471720315376 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_V9HVBBDW NA -0.136636867632813 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VA5T4KAA NA -0.417876918814331 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VARR255N NA 1.33832816554317 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VF5XWFXD NA 0.762230987561543 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VJVDJABP NA -0.695259557154343 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VMEX27TN NA -1.46469132775555 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VMMJYN8Z NA 1.82737135155359 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 151 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VNE0ZPBS NA 1.44092632362792 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VNK9XYV9 NA -1.29693386648225 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VNWKNRY4 NA 0.608180332400409 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VP5Y45Z7 NA 0.863324827345033 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VPBMDMQX NA 0.12757349113471 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VPMKHW9X NA 2.03443770687916 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VR7FR1NE NA 1.08778330880405 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VT6C6N6K NA -1.36214449772322 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VTJ9ESSV NA 0.151627555015228 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VVFBW0YH NA -0.781805332136291 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VVTHDRBD NA 0.963014380431105 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VW85Q4XJ NA 1.51667793592297 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 68 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_VXEFKW5P NA 0.623551852116203 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_W18SF91A NA 1.12751563548858 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_W3R88RFP NA 1.88308155042839 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_W4DB5RP1 NA 0.122542341760486 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_W4HGV6E7 NA 1.10353042233458 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 71 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_W60RQAKK NA 0.529553943093341 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_W644VEVE NA -0.754804182508979 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_W6AC5J3C NA 1.62800158874886 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 70 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_W7FP2G3F NA 0.541084701467353 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_W97QQYKQ NA 1.2153833882667 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_W9AT0MR7 NA 0.0308140384495702 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_W9N9844Q NA -0.520653568944597 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WAXJY4XQ NA 0.671797016332298 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WCRKYV0T NA 2.09932346556598 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WE3Q8A73 NA -0.961271557890411 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WFD0GE5X NA 1.07603924670856 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WG203ECV NA 0.83204634938438 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WGK8ZMVA NA -0.0796867010013092 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WH5HDE0A NA 1.09829811844742 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WH8G4VFB NA -0.0126925946148357 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WJ9H4NZZ NA 0.362089952144717 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WKESC3XN NA 0.70728204214464 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WMEHNDSK NA 0.47305235840921 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WRHDP7WF NA -0.32620077436763 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WSQMAA33 NA -3.60323163447463 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WV0S8N4M NA 0.432804632879284 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WVW3W6ZB NA 1.7599888203491 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WWKNJSJ5 NA -0.879143145970277 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WYERXS4G NA 0.0603210824256509 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_WYG77VVP NA 0.576999481254237 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_X0F9AYEC NA 1.39083842322632 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_X16PENSA NA 1.11021007751174 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_X4X1SFSE NA 1.92284159258643 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_X59HSFGG NA 1.33365097327908 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_X67GTEM6 NA -0.226122560842469 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_X91K8KMG NA -0.459993253296089 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_XBQZYS8G NA 1.77057860449339 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_XF0ZX2B3 NA 0.420238955321484 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_XGSA3GQE NA 0.715156587139983 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_XJTW0P8P NA 2.49008088618485 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 72 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_XKKB4MZV NA 0.164679969641633 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_XQ5SFW35 NA 0.26743094709246 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_XQYHPBFS NA -0.965286619854837 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_Y0PCBNJV NA 0.641593858570612 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_Y3G1X98S NA 0.891235793247534 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_Y7F9E2E9 NA 0.538094472227084 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_Y8D1F5WW NA -1.92493752168796 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_YA8RBGD8 NA 0.526774490572261 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_YB2RXRHT NA 1.57211546280668 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_YCREDZTJ NA 1.28613261876932 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_YE1MAQYJ NA 0.363114553104767 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_YEQVW4ND NA 1.42623388629879 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_YEW22W35 NA -0.0643401252902913 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_YG0A13JH NA 0.550708455142578 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_YMAJC22S NA 0.901419978343155 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_YNEQJ6AH NA -0.0360272374278611 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_YVMEEBKC NA 0.48403325106172 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_YY5B2XDD NA 0.11124028205414 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_YZ2Z1Q6Y NA 0.589096511331623 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_Z0AVVB1V NA 0.307646658102216 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_Z1A875MW NA 1.504953406289 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_Z45HD492 NA -0.303386326601206 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_Z6BWR941 NA 1.10009860098949 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_Z6MC4N8D NA 0.635963404541878 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_Z7Y2466H NA 0.761025165925472 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_Z8YZ6QGS NA 0.987896398871931 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ZF34SJGN NA -1.87826068815873 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ZH1FBX50 NA 1.82989251033493 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ZJZXDPTP NA 1.12671100720683 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ZR96A4FH NA 1.2405082852194 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ZRM0W01M NA 1.34736134716363 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ZV1P6W9C NA 1.97093799446146 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ZV68CES9 NA 0.466572741474784 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ZV9Z3SY6 NA 0.603540722446731 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ZVWE73JZ NA 1.72579247620001 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ZVZDDW2G NA 0.541314494082177 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ZWR9W4FX NA -1.32957431187138 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ZXYDSBM9 NA -0.790044500964712 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ZZMYDZJW NA 0.0914238900770306 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ZZPBANDD NA 1.22980903219882 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ZZWMD6FA NA 2.01860396386615 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 57 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009137.1--KIFC3 BS_11WY983P NA 2.64354386853362 NA NA NA differentially expressed NA NA 16:68944691 16:57788794 ARRIBA other 10 2 medium [INTRACHROMOSOMAL[chr16:11.06Mb]],inversion/3'-3' AC009137.1 NA KIFC3 NA NA NA NA NA NA -AC009264.1--AC009541.1(131639)/AC009264.1(65603) BS_9V633J1X 81.4505828464069 1.63899308818388 NA 81.4505828464069 differentially expressed no change NA differentially expressed 7:137032794 7:136619956 ARRIBA other 1 1 high [],deletion AC009264.1 NA AC009541.1 AC009264.1 NA NA NA NA NA -AC009264.1--AC009541.1(131639)/AC009264.1(65603) BS_GCQFGDTX 49.5791786077499 -0.0545290518943253 NA 49.5791786077499 differentially expressed no change NA differentially expressed 7:137032794 7:136619956 ARRIBA other 2 1 high [],deletion AC009264.1 NA AC009541.1 AC009264.1 NA NA NA NA NA -AC009403.2--AC009403.2 BS_1QXEC43H -1.22343777234331 -1.22343777234331 NA NA no change no change NA NA 7:155503021 7:155509097 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA -AC009403.2--AC009403.2 BS_470DYRJQ -1.24183384909661 -1.24183384909661 NA NA no change no change NA NA 7:155503021 7:155509097 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA -AC009403.2--AC009403.2 BS_FEPRNEXX 0.794521765546824 0.794521765546824 NA NA no change no change NA NA 7:155503021 7:155509097 ARRIBA other 10 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA -AC009403.2--AC009403.2 BS_N6NE6B3W 0.244663787687289 0.244663787687289 NA NA no change no change NA NA 7:155503021 7:155509097 ARRIBA other 20 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA -AC009403.2--AC009403.2 BS_QEYPFYHD 1.99792311914792 1.99792311914792 NA NA no change no change NA NA 7:155503021 7:155509097 ARRIBA other 23 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA -AC009403.2--AC009403.2 BS_S69QZAJR -0.556937857727281 -0.556937857727281 NA NA no change no change NA NA 7:155503021 7:155509097 ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA -AC009403.2--AC009403.2 BS_SFKZSJN1 -0.876728354878069 -0.876728354878069 NA NA no change no change NA NA 7:155503021 7:155509097 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA -AC009403.2--AC009403.2 BS_WH5HDE0A -1.23261656790571 -1.23261656790571 NA NA no change no change NA NA 7:155503021 7:155509097 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA -AC009403.2--AC009403.2 BS_ZRM0W01M -0.295759719874637 -0.295759719874637 NA NA no change no change NA NA 7:155503021 7:155509097 ARRIBA other 6 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA -AC009975.1--ELOBP3(16631)/AC009975.1(11814) BS_T55Y4Z0Y NA NA NA NA NA NA NA NA 2:48809641 2:48797526 ARRIBA other 2 2 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA -AC009975.1--ELOBP3(18411)/AC009975.1(10034) BS_2ADZNNV4 NA NA NA NA NA NA NA NA 2:48809642 2:48799306 ARRIBA other 1 8 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA -AC009975.1--ELOBP3(18411)/AC009975.1(10034) BS_4EN8D8Y4 NA NA NA NA NA NA NA NA 2:48809642 2:48799306 ARRIBA other 1 1 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA -AC009975.1--ELOBP3(18411)/AC009975.1(10034) BS_4Y6BCYK5 NA NA NA NA NA NA NA NA 2:48809642 2:48799306 ARRIBA other 1 1 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA -AC009975.1--ELOBP3(18411)/AC009975.1(10034) BS_52426AMF NA NA NA NA NA NA NA NA 2:48809642 2:48799306 ARRIBA other 1 0 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA -AC009975.1--ELOBP3(18411)/AC009975.1(10034) BS_MF9X3PKH NA NA NA NA NA NA NA NA 2:48809642 2:48799306 ARRIBA other 1 2 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA -AC009975.1--ELOBP3(18412)/AC009975.1(10033) BS_5YJEPPTP NA NA NA NA NA NA NA NA 2:48809641 2:48799307 ARRIBA other 2 6 medium [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA -AC009975.1--ELOBP3(26765)/AC009975.1(1680) BS_C6SKJG3N NA NA NA NA NA NA NA NA 2:48946405 2:48807660 ARRIBA other 1 3 high [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA -AC009975.1--ELOBP3(26765)/AC009975.1(1680) BS_CGB2WS2A NA NA NA NA NA NA NA NA 2:48946405 2:48807660 ARRIBA other 2 1 high [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA -AC009975.1--ELOBP3(26765)/AC009975.1(1680) BS_V89HGTET NA NA NA NA NA NA NA NA 2:48946405 2:48807660 ARRIBA other 2 0 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA -AC009975.1--ELOBP3(28223)/AC009975.1(222) BS_5PEFNDCY NA NA NA NA NA NA NA NA 2:48809641 2:48809118 ARRIBA other 3 5 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA -AC009975.1--ELOBP3(28223)/AC009975.1(222) BS_7Z93ZYMS NA NA NA NA NA NA NA NA 2:48809641 2:48809118 ARRIBA other 1 0 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA -AC009975.1--ELOBP3(28223)/AC009975.1(222) BS_NRPG5K4K NA NA NA NA NA NA NA NA 2:48809641 2:48809118 ARRIBA other 8 9 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA -AC009975.1--ELOBP3(28223)/AC009975.1(222) BS_R244Z0WX NA NA NA NA NA NA NA NA 2:48809641 2:48809118 ARRIBA other 2 0 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA -AC009975.1--ELOBP3(28223)/AC009975.1(222) BS_SDA4RMMG NA NA NA NA NA NA NA NA 2:48809641 2:48809118 ARRIBA other 3 2 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA -AC009975.1--ELOBP3(28223)/AC009975.1(222) BS_X16PENSA NA NA NA NA NA NA NA NA 2:48809641 2:48809118 ARRIBA other 2 3 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA -AC010099.4(24343)/AC073486.1(27683)--AC010099.4 BS_N8J1DP02 NA NA NA NA NA NA NA NA 7:125403664 7:125347125 ARRIBA other 3 0 medium [],duplication AC010099.4 AC073486.1 AC010099.4 NA NA NA NA NA NA -AC010132.3--ABCB1 BS_K17VQECG NA 1.44406873936898 NA NA NA no change NA NA 7:42932118 7:87566976 ARRIBA in-frame 9 0 medium [INTRACHROMOSOMAL[chr7:44.57Mb]],duplication AC010132.3 NA ABCB1 NA NA Oncogene NA NA NA -AC010132.3--ABCB1 BS_K17VQECG NA 1.44406873936898 NA NA NA no change NA NA 7:42932118 7:87566241 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:44.57Mb]],duplication AC010132.3 NA ABCB1 NA NA Oncogene NA NA NA -AC010132.3--INHBA-AS1 BS_K17VQECG NA 0.593487132921799 NA NA NA no change NA NA 7:42932118 7:41776841 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:1.13Mb]],inversion AC010132.3 NA INHBA-AS1 NA NA NA NA NA NA -AC010132.3--LINC-PINT BS_6WP1FHTE NA -1.04571558793558 NA NA NA no change NA NA 7:42911915 7:130984109 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:88.01Mb]],duplication AC010132.3 NA LINC-PINT NA NA TumorSuppressorGene NA NA NA -AC010463.1--AC087633.2 BS_AZN38B7V NA NA NA NA NA NA NA NA 19:17274185 15:95002318 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr19--chr15]],translocation/5'-5' AC010463.1 NA AC087633.2 NA NA NA NA NA NA -AC010745.4(3590)/AC010880.1(31100)--AC005865.2 BS_W644VEVE 142.456031814028 NA NA NA differentially expressed NA NA NA 2:16323156 12:3307818 ARRIBA other 5 0 medium [],translocation AC010745.4 AC010880.1 AC005865.2 NA NA NA NA NA NA -AC010745.4(3590)/AC010880.1(31100)--AC007207.1 BS_W644VEVE 142.456031814028 NA NA NA differentially expressed NA NA NA 2:16323156 12:4110280 ARRIBA other 10 0 medium [],translocation AC010745.4 AC010880.1 AC007207.1 NA NA NA NA NA NA -AC010880.1(23148)/AC104623.1(67326)--MYCNUT BS_W644VEVE NA 78.1725448973702 NA NA NA differentially expressed NA NA 2:16455850 2:15935774 ARRIBA other 4 0 high [],duplication AC010880.1 AC104623.1 MYCNUT NA NA NA NA NA NA -AC011444.1--GADD45GIP1 BS_8PNA0V6R NA -0.283897847914241 NA NA NA no change NA NA 19:5978514 19:12954526 ARRIBA other 17 1 high [INTRACHROMOSOMAL[chr19:6.93Mb]],inversion AC011444.1 NA GADD45GIP1 NA NA TumorSuppressorGene, Oncogene NA NA NA -AC011474.1--AC011474.1 BS_0Y66ZBWE NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 11 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_273HKCT4 NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 18 3 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_2A5R9MEJ NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 11 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_42DY6WS7 NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 10 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_5CMGN56B NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 8 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_5PEFNDCY NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 16 3 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_5PV5N4HQ NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 6 2 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_66HQ3E4Z NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_6MY8W3H0 NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 8 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_7WNSZNE3 NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 15 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_8RCR7Y4B NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_92VDQ0NE NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 12 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_9Q6Z6VJC NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 12 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_A13BMEF5 NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 9 2 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_AD4JPN9Q NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 10 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_AMQGM1V9 NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 8 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_B8T7M0WV NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_BPSTSCBJ NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_C7A2TYAC NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 9 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_CREQ97QC NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 9 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_CZ82ANWP NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_DPF1CX0G NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 4 2 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_DS438CXE NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 29 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_DV86M0Y7 NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_EHVYJAVA NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_FWMJPKCV NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 55 6 high [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_HA20Y4XY NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 10 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_HCP5C912 NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 12 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_K7MVS0Z7 NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 7 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_MWWZBQ60 NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 10 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_P4NX9MPA NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 11 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_PEP9NZXN NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 19 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_R13X6TMW NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 12 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_TG93XC55 NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 9 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_TRKH2SPE NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_VTJ9ESSV NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 13 2 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_XJTW0P8P NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 18 3 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_XQ5SFW35 NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 3 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_YMAJC22S NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 11 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_YNEQJ6AH NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 14 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_ZR96A4FH NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 7 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_ZZPBANDD NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 9 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC011625.1--TRRAP BS_84XCR9GG 51.8134285824673 3.30112155056111 NA NA differentially expressed differentially expressed NA NA 7:132352381 7:98929989 ARRIBA other 57 1 high [INTRACHROMOSOMAL[chr7:33.34Mb]],duplication AC011625.1 NA TRRAP NA NA Kinase, CosmicCensus, Kinase NA NA NA -AC011625.1--TRRAP BS_84XCR9GG 51.8134285824673 3.30112155056111 NA NA differentially expressed differentially expressed NA NA 7:132366067 7:98929989 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr7:33.34Mb]],duplication AC011625.1 NA TRRAP NA NA Kinase, CosmicCensus, Kinase NA NA NA -AC011625.1--TRRAP BS_84XCR9GG 51.8134285824673 3.30112155056111 NA NA differentially expressed differentially expressed NA NA 7:132352381 7:98930633 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:33.34Mb]],duplication AC011625.1 NA TRRAP NA NA Kinase, CosmicCensus, Kinase NA NA NA -AC012358.3--ALK BS_9XVACXP0 NA 6.96445284389594 NA NA NA differentially expressed NA NA 2:55342684 2:29224084 ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr2:25.36Mb]],deletion/3'-3' AC012358.3 NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -AC013652.1--THBS1 BS_DMZP9G1H NA 3.47956151675317 NA NA NA differentially expressed NA NA 15:38974155 15:39594233 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr15:0.15Mb]],duplication/5'-5' AC013652.1 NA THBS1 NA NA TumorSuppressorGene, Oncogene NA NA NA -AC015726.2(24658)/AC015726.1(3243)--DAW1 BS_H0QWRJE2 NA 3.72986367775454 3.50878446117017 NA NA differentially expressed differentially expressed NA 17:19893347 2:227912256 ARRIBA other 4 0 medium [],translocation AC015726.2 AC015726.1 DAW1 NA NA NA NA NA NA -AC015908.2--PIRT(9447)/AC015908.2(1649) BS_N6NE6B3W NA 0.960012938348775 NA NA NA no change NA NA 17:10880720 17:10847892 ARRIBA other 6 0 medium [],duplication AC015908.2 NA PIRT AC015908.2 NA NA NA NA NA -AC015936.1(9123)/C1QL1(1631)--KPNB1 BS_MN5XVP5A NA 2.08521932334721 5.27844195637782 NA NA differentially expressed differentially expressed NA 17:44958062 17:47650386 ARRIBA other 13 0 high [],deletion AC015936.1 C1QL1 KPNB1 NA NA NA NA NA NA -AC015936.1(9123)/C1QL1(1631)--KPNB1 BS_RCCN63K6 NA 2.63759386830431 4.89618812041855 NA NA differentially expressed differentially expressed NA 17:44958062 17:47650386 ARRIBA other 4 1 medium [],deletion AC015936.1 C1QL1 KPNB1 NA NA NA NA NA NA -AC016629.2--ZBTB45 BS_HF3RNN2T NA 2.85507380987494 NA NA NA differentially expressed NA NA 19:58586214 19:58525479 ARRIBA other 9 0 medium [INTRACHROMOSOMAL[chr19:0.05Mb],LOCAL_INVERSION:+:-:[47247]],duplication/5'-5' AC016629.2 NA ZBTB45 NA NA TranscriptionFactor NA NA NA -AC016831.1--LINC-PINT BS_HCP5C912 NA 0.816007322475176 NA NA NA no change NA NA 7:130884317 7:130984109 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.03Mb],LOCAL_REARRANGEMENT:-:[28450]],duplication AC016831.1 NA LINC-PINT NA NA TumorSuppressorGene NA NA NA -AC016831.1--LINC-PINT BS_M4NVX721 NA 0.154771179123695 NA NA NA no change NA NA 7:130912110 7:131025167 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.03Mb],LOCAL_REARRANGEMENT:-:[28450]],duplication AC016831.1 NA LINC-PINT NA NA TumorSuppressorGene NA NA NA -AC017037.2(123916)/AC098679.4(15969)--AC098679.5 BS_3BVVWHP5 NA NA NA NA NA NA NA NA 4:158093531 4:158111913 ARRIBA other 5 0 medium [],duplication AC017037.2 AC098679.4 AC098679.5 NA NA NA NA NA NA -AC017037.3(111040)/AC017037.4(16205)--PRDM5 BS_4QW2S1Q8 NA 4.80672932073705 NA NA NA differentially expressed NA NA 4:157929612 4:120799745 ARRIBA other 10 0 medium [],deletion AC017037.3 AC017037.4 PRDM5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -AC018685.1(102296)/AC011995.2(1011)--AC011995.2 BS_VNWKNRY4 0.943031111566352 NA NA NA no change NA NA NA 2:2833253 2:2834506 ARRIBA other 15 2 high [],duplication AC018685.1 AC011995.2 AC011995.2 NA NA NA NA NA NA -AC018692.1(52045)/CR382285.1(8126)--CR382285.1 BS_VNWKNRY4 NA NA NA NA NA NA NA NA 21:9966891 21:9975104 ARRIBA other 6 0 medium [],duplication AC018692.1 CR382285.1 CR382285.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_34201DKZ NA 43.4527670657848 NA NA NA differentially expressed NA NA 2:199070153 2:198579708 ARRIBA other 9 3 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_34201DKZ NA 43.4527670657848 NA NA NA differentially expressed NA NA 2:199071420 2:198579708 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_34201DKZ NA 43.4527670657848 NA NA NA differentially expressed NA NA 2:199071746 2:198579708 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_3F4FQJMR NA 80.8387627528552 NA NA NA differentially expressed NA NA 2:199070153 2:198579708 ARRIBA other 8 6 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_3F4FQJMR NA 80.8387627528552 NA NA NA differentially expressed NA NA 2:199071420 2:198579708 ARRIBA other 6 1 low [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_67Z63A2K NA 41.1111012297903 NA NA NA differentially expressed NA NA 2:199070153 2:198579708 ARRIBA other 7 1 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_67Z63A2K NA 41.1111012297903 NA NA NA differentially expressed NA NA 2:199071420 2:198579708 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_7BTZQKYY NA 81.5805417257895 NA NA NA differentially expressed NA NA 2:199070153 2:198579708 ARRIBA other 33 5 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_7BTZQKYY NA 81.5805417257895 NA NA NA differentially expressed NA NA 2:199071746 2:198579708 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_7BTZQKYY NA 81.5805417257895 NA NA NA differentially expressed NA NA 2:199071420 2:198579708 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_HC44ZA0V NA 77.9432226597751 NA NA NA differentially expressed NA NA 2:199070153 2:198579708 ARRIBA other 7 1 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_HC44ZA0V NA 77.9432226597751 NA NA NA differentially expressed NA NA 2:199071420 2:198579708 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_HC44ZA0V NA 77.9432226597751 NA NA NA differentially expressed NA NA 2:199071746 2:198579708 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_M1T1K5WV NA 49.606396576782 NA NA NA differentially expressed NA NA 2:199070153 2:198579708 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_M1T1K5WV NA 49.606396576782 NA NA NA differentially expressed NA NA 2:199071420 2:198579708 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_RHD7XPNP NA 44.8959516147983 NA NA NA differentially expressed NA NA 2:199070153 2:198579708 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_W4HGV6E7 NA 33.0410779500224 NA NA NA differentially expressed NA NA 2:199070153 2:198579708 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_W4HGV6E7 NA 33.0410779500224 NA NA NA differentially expressed NA NA 2:199071746 2:198579708 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_WFD0GE5X NA 26.6303968581502 NA NA NA differentially expressed NA NA 2:199070153 2:198579708 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1--AC019330.1 BS_WYERXS4G NA 27.719228724614 NA NA NA differentially expressed NA NA 2:199070153 2:198579708 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA -AC020718.1(29805)/AC018717.1(6988)--AC019330.1 BS_Q5WZYWCT NA 24.0595514789552 -0.163094132722263 NA NA differentially expressed no change NA 2:199101596 2:198579708 ARRIBA other 3 0 medium [],deletion AC020718.1 AC018717.1 AC019330.1 NA NA NA NA NA NA -AC020719.1--RFTN2 BS_0VRSD9V3 NA -0.816194749346802 NA NA NA no change NA NA 2:198191345 2:197572280 ARRIBA other 15 1 high [INTRACHROMOSOMAL[chr2:0.51Mb]],deletion AC020719.1 NA RFTN2 NA NA NA NA NA NA -AC021028.1--CHST6 BS_WSQMAA33 NA 1.22486949268852 NA NA NA no change NA NA 10:80534171 16:75477313 ARRIBA other 4 0 low [INTERCHROMOSOMAL[chr10--chr16]],translocation AC021028.1 NA CHST6 NA NA NA NA NA NA -AC021351.1--DPH6-AS1 BS_7BTZQKYY NA 2.37448677749596 NA NA NA differentially expressed NA NA 15:35940927 15:35857987 ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr15:0.08Mb],LOCAL_INVERSION:-:+:[80166]],duplication/3'-3' AC021351.1 NA DPH6-AS1 NA NA NA NA NA NA -AC021351.1--DPH6-AS1 BS_7H4RFCW9 NA 3.31080902609785 NA NA NA differentially expressed NA NA 15:35940927 15:35857987 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr15:0.08Mb],LOCAL_INVERSION:-:+:[80166]],duplication/3'-3' AC021351.1 NA DPH6-AS1 NA NA NA NA NA NA -AC021851.1(20727)/LIN28AP1(24515)--NUP35 BS_GCQFGDTX NA 2.69677254146384 19.5803751438544 NA NA differentially expressed differentially expressed NA 2:183236127 2:183157444 ARRIBA other 1 0 low [],duplication AC021851.1 LIN28AP1 NUP35 NA NA NA NA NA NA -AC022387.1--DDR2 BS_VJ2S5DVS NA 5.5049101115603 NA NA NA differentially expressed NA NA 10:63664647 1:162720491 ARRIBA other 9 1 medium [INTERCHROMOSOMAL[chr10--chr1]],translocation/3'-3' AC022387.1 NA DDR2 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA -AC022387.1--DDR2 BS_WH8G4VFB NA 4.87858998172074 NA NA NA differentially expressed NA NA 10:63664647 1:162720491 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr10--chr1]],translocation/3'-3' AC022387.1 NA DDR2 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA -AC022387.1--DDR2 BS_ZZWMD6FA NA 4.62899067016008 NA NA NA differentially expressed NA NA 10:63664647 1:162720491 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr10--chr1]],translocation/3'-3' AC022387.1 NA DDR2 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA -AC022701.1(368880)/AC016383.1(121853)--DCC BS_8GW1TMV2 NA 8.91380669226418 NA NA NA differentially expressed NA NA 18:52214508 18:52752054 ARRIBA other 4 0 high [],deletion AC022701.1 AC016383.1 DCC NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -AC022762.1--TRIM5 BS_VNWKNRY4 NA 4.57940247036363 NA NA NA differentially expressed NA NA 11:6110264 11:5680238 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr11:0.17Mb]],deletion AC022762.1 NA TRIM5 NA NA NA NA NA NA -AC022784.1--AC022784.3 BS_KK5C8VCK NA NA NA NA NA NA NA NA 8:9189586 8:9167773 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:0.02Mb],LOCAL_REARRANGEMENT:+:[20875]],duplication AC022784.1 NA AC022784.3 NA NA NA NA NA NA -AC022826.2--AP001330.3(15717)/AP001330.2(21251) BS_HZRM07TW NA NA NA NA NA NA NA NA 8:73738284 8:101240290 ARRIBA other 3 0 medium [],duplication AC022826.2 NA AP001330.3 AP001330.2 NA NA NA NA NA -AC022893.2(22609)/TERF1(35810)--PTK2 BS_HZRM07TW NA 0.446430785726616 0.751008466275184 NA NA no change no change NA 8:72973054 8:140925749 ARRIBA other 1 0 low [],duplication AC022893.2 TERF1 PTK2 NA NA Kinase TranscriptionFactor NA NA -AC023055.1--AL590824.1(25689)/FAM46A(908561) BS_VJ2S5DVS NA NA NA 0.877969325070145 NA NA NA no change 12:55789075 6:80582878 ARRIBA other 18 1 high [],translocation AC023055.1 NA AL590824.1 FAM46A NA NA NA NA NA -AC023055.1--AL590824.1(54976)/FAM46A(879274) BS_VJ2S5DVS NA NA NA 0.877969325070145 NA NA NA no change 12:55789075 6:80612165 ARRIBA frameshift 3 0 medium [],translocation AC023055.1 NA AL590824.1 FAM46A NA NA NA NA NA -AC023968.2(107864)/AC023968.1(174)--ZNF75A BS_7P83Z28P NA 0.403642174736649 NA NA NA no change NA NA 15:79668168 16:3311753 ARRIBA other 2 0 medium [],translocation AC023968.2 AC023968.1 ZNF75A NA NA TranscriptionFactor NA NA NA -AC024901.1--AEBP2 BS_CREQ97QC NA 2.79007781674608 NA NA NA differentially expressed NA NA 12:19944544 12:19650396 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr12:0.05Mb],LOCAL_REARRANGEMENT:+:[54650]],duplication AC024901.1 NA AEBP2 NA NA TranscriptionFactor NA NA NA -AC025176.1(21019)/CENPK(9699)--CENPK BS_ERWT0ZWE NA 6.64397242481401 6.64397242481401 NA NA differentially expressed differentially expressed NA 5:65508067 5:65552549 ARRIBA other 3 0 medium [],duplication AC025176.1 CENPK CENPK NA NA NA NA NA NA -AC025176.1(21019)/CENPK(9699)--CENPK BS_ZV68CES9 NA 8.04183890091774 8.04183890091774 NA NA differentially expressed differentially expressed NA 5:65508067 5:65552549 ARRIBA other 2 0 low [],duplication AC025176.1 CENPK CENPK NA NA NA NA NA NA -AC025178.1--GOLPH3 BS_1EBQ3T20 NA 2.59864646545363 NA NA NA differentially expressed NA NA 5:32121860 5:32143880 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[2763]],duplication AC025178.1 NA GOLPH3 NA NA NA NA NA NA -AC025178.1--GOLPH3 BS_53CTGDQG NA 2.58651334262623 NA NA NA differentially expressed NA NA 5:32106124 5:32143880 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[2763]],duplication AC025178.1 NA GOLPH3 NA NA NA NA NA NA -AC025178.1--GOLPH3 BS_53CTGDQG NA 2.58651334262623 NA NA NA differentially expressed NA NA 5:32121495 5:32143880 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[2763]],duplication AC025178.1 NA GOLPH3 NA NA NA NA NA NA -AC025178.1--GOLPH3 BS_N6NE6B3W NA 1.41458006077371 NA NA NA no change NA NA 5:32106124 5:32143880 ARRIBA other 1 3 medium [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[2763]],duplication AC025178.1 NA GOLPH3 NA NA NA NA NA NA -AC025178.1--GOLPH3 BS_N6NE6B3W NA 1.41458006077371 NA NA NA no change NA NA 5:32121495 5:32135686 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[2763]],duplication AC025178.1 NA GOLPH3 NA NA NA NA NA NA -AC025178.1--GOLPH3 BS_N6NE6B3W NA 1.41458006077371 NA NA NA no change NA NA 5:32121860 5:32143880 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[2763]],duplication AC025178.1 NA GOLPH3 NA NA NA NA NA NA -AC025594.2--ATP6V1F BS_QZFEB94Q NA -0.813796382681749 NA NA NA no change NA NA 7:128866830 7:128865377 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_REARRANGEMENT:+:[464]],duplication AC025594.2 NA ATP6V1F NA NA NA NA NA NA -AC026748.1--LINC01377(191635)/LINC01019(44285) BS_BPWEFR89 NA -0.220068444884892 NA 2.88866391578655 NA no change NA differentially expressed 5:1386653 5:3372867 ARRIBA other 1 1 medium [],deletion AC026748.1 NA LINC01377 LINC01019 NA NA NA NA NA -AC026951.1--TJP1 BS_51RA1PGE NA 1.17759232166761 NA NA NA no change NA NA 15:31767570 15:29874836 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr15:1.80Mb]],duplication AC026951.1 NA TJP1 NA NA NA NA NA NA -AC027097.1--ERN1(14821)/SNHG25(330) BS_TW8DQH8J NA 1.47724519984033 NA 1.86234879822264 NA no change NA no change 18:57642052 17:64145640 ARRIBA other 1 2 high [],translocation AC027097.1 NA ERN1 SNHG25 NA Kinase NA NA NA -AC027097.2--ERN1(14821)/SNHG25(330) BS_TW8DQH8J NA 1.47724519984033 NA 1.86234879822264 NA no change NA no change 18:57642052 17:64145640 ARRIBA other 1 2 high [],translocation AC027097.2 NA ERN1 SNHG25 NA Kinase NA NA NA -AC027796.4--KCNJ18(48904)/AC243725.1(20238) BS_4B0BAVTX NA 0.0211579304993571 NA NA NA no change NA NA 17:3657662 17:21753516 ARRIBA other 3 0 medium [],duplication AC027796.4 NA KCNJ18 AC243725.1 NA NA NA NA NA -AC034206.1(2835)/LINC01959(10875)--AC034206.1 BS_QEYPFYHD NA NA NA NA NA NA NA NA 5:135637709 5:135629237 ARRIBA other 2 0 low [],duplication AC034206.1 LINC01959 AC034206.1 NA NA NA NA NA NA -AC034229.4(9451)/FAM173B(12839)--FAM173B BS_NKRYMHEP NA 0.285610380514039 0.285610380514039 NA NA no change no change NA 5:10213491 5:10227647 ARRIBA other 4 0 high [],duplication AC034229.4 FAM173B FAM173B NA NA NA NA NA NA -AC034229.4(9451)/FAM173B(12839)--FAM173B BS_QSTAVWGE NA -0.195622234231651 -0.195622234231651 NA NA no change no change NA 5:10213491 5:10227647 ARRIBA other 4 0 high [],duplication AC034229.4 FAM173B FAM173B NA NA NA NA NA NA -AC034229.4(9451)/FAM173B(12839)--FAM173B BS_ZV68CES9 NA 1.47225569100925 1.47225569100925 NA NA no change no change NA 5:10213491 5:10227647 ARRIBA other 3 0 medium [],duplication AC034229.4 FAM173B FAM173B NA NA NA NA NA NA -AC036214.1(11403)/MRPS28(35555)--AC036214.3 BS_W9AT0MR7 NA NA -2.17562329885543 NA NA NA differentially expressed NA 8:79883162 8:79919148 ARRIBA other 1 0 low [],duplication AC036214.1 MRPS28 AC036214.3 NA NA NA NA NA NA -AC036214.1(11403)/MRPS28(35555)--MRPS28 BS_W9AT0MR7 NA -2.17562329885543 -2.17562329885543 NA NA differentially expressed differentially expressed NA 8:79883162 8:79919148 ARRIBA other 1 0 low [],duplication AC036214.1 MRPS28 MRPS28 NA NA NA NA NA NA -AC036214.1(44463)/MRPS28(2495)--AC036214.3 BS_N6NE6B3W NA NA -0.343793733311118 NA NA NA no change NA 8:79916222 8:79919148 ARRIBA other 1 0 low [],duplication AC036214.1 MRPS28 AC036214.3 NA NA NA NA NA NA -AC036214.1(44463)/MRPS28(2495)--MRPS28 BS_N6NE6B3W NA -0.343793733311118 -0.343793733311118 NA NA no change no change NA 8:79916222 8:79919148 ARRIBA other 1 0 low [],duplication AC036214.1 MRPS28 MRPS28 NA NA NA NA NA NA -AC046136.1--GAP43 BS_YEQVW4ND NA 0.347743942899978 NA NA NA no change NA NA 3:115262930 3:115676013 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA -AC048338.1--CPM BS_X23724NJ NA 0.593980872888814 NA NA NA no change NA NA 12:122261261 12:68871956 ARRIBA in-frame 9 2 high [INTRACHROMOSOMAL[chr12:53.24Mb]],deletion AC048338.1 NA CPM NA NA NA NA NA NA -AC058791.1(1752)/LINC-PINT(347)--MET BS_6WP1FHTE -1.5253685247153 11.4981207363808 -1.04571558793558 NA no change differentially expressed no change NA 7:130941413 7:116699071 ARRIBA other 100 10 high [],inversion AC058791.1 LINC-PINT MET NA NA Kinase, CosmicCensus, Oncogene, Kinase TumorSuppressorGene NA NA -AC058791.1(1752)/LINC-PINT(347)--MET BS_E60JZ9Z3 -1.54440955121316 4.06894629197446 -1.63006183983916 NA no change differentially expressed no change NA 7:130941413 7:116699071 ARRIBA other 24 4 high [],inversion AC058791.1 LINC-PINT MET NA NA Kinase, CosmicCensus, Oncogene, Kinase TumorSuppressorGene NA NA -AC060766.7--SLFN12 BS_8ZS9F31R NA 10.8986824464917 NA NA NA differentially expressed NA NA 17:35409465 17:35411927 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr17:0.00Mb],LOCAL_REARRANGEMENT:-:[1292]],duplication AC060766.7 NA SLFN12 NA NA NA NA NA NA -AC060834.2--AC096553.1(72298)/AC060834.1(18240) BS_VVFBW0YH 45.4235252716366 NA NA NA differentially expressed NA NA NA 7:9743302 7:9708001 ARRIBA other 6 1 medium [],duplication AC060834.2 NA AC096553.1 AC060834.1 NA NA NA NA NA -AC062021.1--AHCYP4(421176)/AC062021.1(42242) BS_3P20Q2C3 5.79377588690416 -0.174014660880759 NA 5.79377588690416 differentially expressed no change NA differentially expressed 2:139368484 2:139323923 ARRIBA other 3 2 medium [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA -AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_23W9EPFE 2.5012881822129 -0.174014660880759 NA 2.5012881822129 differentially expressed no change NA differentially expressed 2:139368484 2:139339254 ARRIBA other 4 1 high [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA -AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_4GTESTSE 5.61579471744329 -0.174014660880759 NA 5.61579471744329 differentially expressed no change NA differentially expressed 2:139368484 2:139339254 ARRIBA other 20 2 high [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA -AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_4NF35AF6 1.34490252234153 -0.174014660880759 NA 1.34490252234153 no change no change NA no change 2:139368484 2:139339254 ARRIBA other 4 0 medium [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA -AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_5CMGN56B 2.5012881822129 -0.174014660880759 NA 2.5012881822129 differentially expressed no change NA differentially expressed 2:139368484 2:139339254 ARRIBA other 7 0 high [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA -AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_FWMJPKCV 4.05370280138754 -0.174014660880759 NA 4.05370280138754 differentially expressed no change NA differentially expressed 2:139368484 2:139339254 ARRIBA other 11 0 high [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA -AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_GYA4V1RD 1.43746257186692 -0.174014660880759 NA 1.43746257186692 no change no change NA no change 2:139368484 2:139339254 ARRIBA other 3 0 low [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA -AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_HA20Y4XY 3.54061779859809 -0.174014660880759 NA 3.54061779859809 differentially expressed no change NA differentially expressed 2:139368484 2:139339254 ARRIBA other 4 1 high [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA -AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_JFR750KD 1.36836493872339 -0.174014660880759 NA 1.36836493872339 no change no change NA no change 2:139368484 2:139339254 ARRIBA other 3 1 medium [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA -AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_PEP9NZXN 2.05812211278933 -0.174014660880759 NA 2.05812211278933 differentially expressed no change NA differentially expressed 2:139368484 2:139339254 ARRIBA other 7 1 high [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA -AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_YMAJC22S 5.69322869974049 -0.174014660880759 NA 5.69322869974049 differentially expressed no change NA differentially expressed 2:139368484 2:139339254 ARRIBA other 10 1 high [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA -AC063924.1(31237)/AC079950.1(5196)--AC079950.1 BS_HZ707C55 NA NA NA NA NA NA NA NA 12:45476675 12:45519153 ARRIBA other 4 3 high [],duplication AC063924.1 AC079950.1 AC079950.1 NA NA NA NA NA NA -AC063924.1(31237)/AC079950.1(5196)--AC079950.1 BS_ZR96A4FH NA NA NA NA NA NA NA NA 12:45476675 12:45482071 ARRIBA other 5 0 medium [],duplication AC063924.1 AC079950.1 AC079950.1 NA NA NA NA NA NA -AC063944.1--LINC01990 BS_7BTZQKYY NA NA NA NA NA NA NA NA 3:107380585 3:107462735 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr3:0.01Mb],LOCAL_INVERSION:-:+:[9626]],duplication/5'-5' AC063944.1 NA LINC01990 NA NA NA NA NA NA -AC063944.1--LINC01990 BS_B741RZY9 NA NA NA NA NA NA NA NA 3:107380585 3:107462735 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr3:0.01Mb],LOCAL_INVERSION:-:+:[9626]],duplication/5'-5' AC063944.1 NA LINC01990 NA NA NA NA NA NA -AC063944.1--LINC01990 BS_FAVRBEW7 NA NA NA NA NA NA NA NA 3:107380585 3:107462735 ARRIBA other 11 0 high [INTRACHROMOSOMAL[chr3:0.01Mb],LOCAL_INVERSION:-:+:[9626]],duplication/5'-5' AC063944.1 NA LINC01990 NA NA NA NA NA NA -AC063944.1--LINC01990 BS_SES41DAX NA NA NA NA NA NA NA NA 3:107380585 3:107462735 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr3:0.01Mb],LOCAL_INVERSION:-:+:[9626]],duplication/5'-5' AC063944.1 NA LINC01990 NA NA NA NA NA NA -AC063944.1--LINC01990 BS_Z85M2R3N NA NA NA NA NA NA NA NA 3:107380585 3:107462735 ARRIBA other 11 2 high [INTRACHROMOSOMAL[chr3:0.01Mb],LOCAL_INVERSION:-:+:[9626]],duplication/5'-5' AC063944.1 NA LINC01990 NA NA NA NA NA NA -AC067747.1(1487)/TRDMT1(3182)--TRDMT1 BS_HC44ZA0V NA 6.65542699550835 6.65542699550835 NA NA differentially expressed differentially expressed NA 10:17139072 10:17174660 ARRIBA other 4 0 medium [],duplication AC067747.1 TRDMT1 TRDMT1 NA NA NA NA NA NA -AC067747.1(1487)/TRDMT1(3182)--TRDMT1 BS_W4HGV6E7 NA 3.86440772325742 3.86440772325742 NA NA differentially expressed differentially expressed NA 10:17139072 10:17174660 ARRIBA other 4 0 medium [],duplication AC067747.1 TRDMT1 TRDMT1 NA NA NA NA NA NA -AC067747.1(1487)/TRDMT1(3182)--TRDMT1 BS_YE1MAQYJ NA 2.92503484512853 2.92503484512853 NA NA differentially expressed differentially expressed NA 10:17139072 10:17174660 ARRIBA other 3 0 medium [],duplication AC067747.1 TRDMT1 TRDMT1 NA NA NA NA NA NA -AC068446.3(1688)/AC068446.1(31818)--NBEAP1 BS_ZJZXDPTP NA 12.873502388586 NA NA NA differentially expressed NA NA 15:21261835 15:20671268 ARRIBA other 1 2 high [],deletion AC068446.3 AC068446.1 NBEAP1 NA NA Oncogene NA NA NA -AC068446.3(1688)/AC068446.1(31818)--NBEAP1 BS_ZV68CES9 NA 14.6220167576737 NA NA NA differentially expressed NA NA 15:21261835 15:20671268 ARRIBA other 3 11 high [],deletion AC068446.3 AC068446.1 NBEAP1 NA NA Oncogene NA NA NA -AC068446.3(2420)/AC068446.1(31086)--AC100757.2 BS_GCQFGDTX NA NA NA NA NA NA NA NA 15:21262567 15:22360628 ARRIBA other 1 2 medium [],inversion AC068446.3 AC068446.1 AC100757.2 NA NA NA NA NA NA -AC068446.3(980)/AC068446.1(32526)--NBEAP1 BS_K74PZET7 NA 17.2610507552219 NA NA NA differentially expressed NA NA 15:21261127 15:20671268 ARRIBA other 4 2 high [],deletion AC068446.3 AC068446.1 NBEAP1 NA NA Oncogene NA NA NA -AC069208.1--C12orf77 BS_A0DYVX9J NA 307.829972914532 NA NA NA differentially expressed NA NA 12:24368563 12:24997591 ARRIBA other 48 10 high [INTRACHROMOSOMAL[chr12:0.43Mb]],duplication AC069208.1 NA C12orf77 NA NA NA NA NA NA -AC069208.1--C12orf77 BS_A0DYVX9J NA 307.829972914532 NA NA NA differentially expressed NA NA 12:24407485 12:24997591 ARRIBA other 1 5 high [INTRACHROMOSOMAL[chr12:0.43Mb]],duplication AC069208.1 NA C12orf77 NA NA NA NA NA NA -AC069208.1--C12orf77 BS_A0DYVX9J NA 307.829972914532 NA NA NA differentially expressed NA NA 12:24562333 12:24997591 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr12:0.43Mb]],duplication AC069208.1 NA C12orf77 NA NA NA NA NA NA -AC069208.1--C12orf77 BS_A0DYVX9J NA 307.829972914532 NA NA NA differentially expressed NA NA 12:24368563 12:24996339 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr12:0.43Mb]],duplication AC069208.1 NA C12orf77 NA NA NA NA NA NA -AC069281.1--NYAP1(14556)/AC069281.1(362) BS_TM9MH0RP NA -0.234128578704022 NA NA NA no change NA NA 7:100516756 7:100509355 ARRIBA other 3 0 medium [],duplication AC069281.1 NA NYAP1 AC069281.1 NA NA NA NA NA -AC073050.1--AC016723.1 BS_5AF6ZNJF NA NA NA NA NA NA NA NA 2:167293334 2:167818672 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr2:0.26Mb]],deletion/5'-5' AC073050.1 NA AC016723.1 NA NA NA NA NA NA -AC073050.1--DYSF BS_RRAEQZ97 NA 0.893473486624295 NA NA NA no change NA NA 2:167490277 2:71598564 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr2:95.61Mb]],duplication AC073050.1 NA DYSF NA NA NA NA NA NA -AC073409.1(237944)/AC092646.2(12913)--CNTNAP5 BS_SKGJ5SY9 -0.0294627825494395 16.8226923396374 693.082991314588 NA no change differentially expressed differentially expressed NA 2:123682389 2:124221705 ARRIBA other 10 2 high [],deletion AC073409.1 AC092646.2 CNTNAP5 NA NA NA NA NA NA -AC073486.1--AC010099.4 BS_GV3NZ9QD NA NA NA NA NA NA NA NA 7:125438297 7:125347125 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr7:0.05Mb],LOCAL_REARRANGEMENT:+:[52026]],duplication AC073486.1 NA AC010099.4 NA NA NA NA NA NA -AC073486.1--AC010099.4 BS_GV3NZ9QD NA NA NA NA NA NA NA NA 7:125461650 7:125347125 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.05Mb],LOCAL_REARRANGEMENT:+:[52026]],duplication AC073486.1 NA AC010099.4 NA NA NA NA NA NA -AC073486.1--AC010099.4 BS_GV3NZ9QD NA NA NA NA NA NA NA NA 7:125438297 7:125329682 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.05Mb],LOCAL_REARRANGEMENT:+:[52026]],duplication AC073486.1 NA AC010099.4 NA NA NA NA NA NA -AC073486.1--AC010099.4 BS_N8J1DP02 NA NA NA NA NA NA NA NA 7:125431593 7:125347125 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:0.05Mb],LOCAL_REARRANGEMENT:+:[52026]],duplication AC073486.1 NA AC010099.4 NA NA NA NA NA NA -AC073486.1--AC010099.4 BS_N8J1DP02 NA NA NA NA NA NA NA NA 7:125438297 7:125194948 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.05Mb],LOCAL_REARRANGEMENT:+:[52026]],duplication AC073486.1 NA AC010099.4 NA NA NA NA NA NA -AC073486.1--AC010099.4 BS_N8J1DP02 NA NA NA NA NA NA NA NA 7:125438297 7:125329682 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.05Mb],LOCAL_REARRANGEMENT:+:[52026]],duplication AC073486.1 NA AC010099.4 NA NA NA NA NA NA -AC073486.1--AC010099.4(22023)/AC073486.1(30003) BS_9755PSCS NA NA NA NA NA NA NA NA 7:125438297 7:125401344 ARRIBA other 4 0 high [],duplication AC073486.1 NA AC010099.4 AC073486.1 NA NA NA NA NA -AC073486.1--AC010099.4(22023)/AC073486.1(30003) BS_GV3NZ9QD NA NA NA NA NA NA NA NA 7:125438297 7:125401344 ARRIBA other 2 0 low [],duplication AC073486.1 NA AC010099.4 AC073486.1 NA NA NA NA NA -AC073486.1--AC010099.4(22023)/AC073486.1(30003) BS_N8J1DP02 NA NA NA NA NA NA NA NA 7:125438297 7:125401344 ARRIBA other 7 0 high [],duplication AC073486.1 NA AC010099.4 AC073486.1 NA NA NA NA NA -AC073941.1(19607)/AC073941.2(3075)--AC073941.1 BS_5PEFNDCY NA NA NA NA NA NA NA NA 15:46824451 15:46684302 ARRIBA other 1 5 medium [],duplication AC073941.1 AC073941.2 AC073941.1 NA NA NA NA NA NA -AC078785.1--ZBTB20 BS_6JHXXVR7 NA 6.584255568537 NA NA NA differentially expressed NA NA 3:113162019 3:115027574 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr3:1.13Mb]],inversion AC078785.1 NA ZBTB20 NA NA TranscriptionFactor NA NA NA -AC078788.1(2539)/AC078788.2(106)--LGR4 BS_ARBQDTT5 NA 0.669691982808029 NA NA NA no change NA NA 3:153376725 11:27378768 ARRIBA other 2 0 medium [],translocation AC078788.1 AC078788.2 LGR4 NA NA NA NA NA NA -AC078845.1--CHRM2 BS_0VRSD9V3 NA 9.79839719164996 NA NA NA differentially expressed NA NA 7:136329097 7:136869261 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:0.43Mb]],deletion AC078845.1 NA CHRM2 NA NA NA NA NA NA -AC079015.1--MYBL1 BS_AWH9757B NA 6.04663838138519 NA NA NA differentially expressed NA NA 8:138078767 8:66602523 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:71.45Mb]],inversion AC079015.1 NA MYBL1 NA NA Oncogene, TranscriptionFactor, Oncogene NA NA NA -AC079193.2--MICU3 BS_0X9EGHY2 NA -1.02046819181974 NA NA NA no change NA NA 8:17134261 8:17085236 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr8:0.01Mb],LOCAL_REARRANGEMENT:+:[8537]],duplication AC079193.2 NA MICU3 NA NA NA NA NA NA -AC079193.2--MICU3 BS_5VQP0E6K NA 0.354547256657292 NA NA NA no change NA NA 8:17134261 8:17077783 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr8:0.01Mb],LOCAL_REARRANGEMENT:+:[8537]],duplication AC079193.2 NA MICU3 NA NA NA NA NA NA -AC079193.2--MICU3 BS_5VQP0E6K NA 0.354547256657292 NA NA NA no change NA NA 8:17134261 8:17098458 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:0.01Mb],LOCAL_REARRANGEMENT:+:[8537]],duplication AC079193.2 NA MICU3 NA NA NA NA NA NA -AC079193.2--MICU3 BS_ZWR9W4FX NA -1.77887891529861 NA NA NA no change NA NA 8:17134261 8:17085236 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr8:0.01Mb],LOCAL_REARRANGEMENT:+:[8537]],duplication AC079193.2 NA MICU3 NA NA NA NA NA NA -AC080013.1--GFM1 BS_N6NE6B3W NA 1.23045272374346 NA NA NA no change NA NA 3:158742481 3:158652096 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr3:0.04Mb],LOCAL_REARRANGEMENT:+:[39688]],duplication AC080013.1 NA GFM1 NA NA NA NA NA NA -AC080013.1--GFM1 BS_N6NE6B3W NA 1.23045272374346 NA NA NA no change NA NA 3:158742144 3:158645629 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr3:0.04Mb],LOCAL_REARRANGEMENT:+:[39688]],duplication AC080013.1 NA GFM1 NA NA NA NA NA NA -AC080013.1--GFM1 BS_N6NE6B3W NA 1.23045272374346 NA NA NA no change NA NA 3:158742144 3:158649041 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr3:0.04Mb],LOCAL_REARRANGEMENT:+:[39688]],duplication AC080013.1 NA GFM1 NA NA NA NA NA NA -AC083899.1--AC092651.1(4218)/AC083899.1(192) BS_ZXYDSBM9 28.9381558844242 3.38977948872438 NA 28.9381558844242 differentially expressed differentially expressed NA differentially expressed 2:87156514 2:87125198 ARRIBA other 9 0 medium [],duplication AC083899.1 NA AC092651.1 AC083899.1 NA NA NA NA NA -AC084200.1--AC007115.1(121514)/AC025035.1(46740) BS_Q9V7A95C NA NA NA NA NA NA NA NA 12:89989289 12:91315456 ARRIBA other 5 0 medium [],deletion AC084200.1 NA AC007115.1 AC025035.1 NA NA NA NA NA -AC084337.2--LMO2(87951)/CAPRIN1(71443) BS_49FQXT2E NA 1.61593174667929 NA 1.423286247545 NA no change NA no change 11:6481555 11:33980240 ARRIBA frameshift 3 0 medium [],inversion AC084337.2 NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA -AC087500.1--ARHGAP44 BS_M0QYNVK8 NA -1.24662485623004 NA NA NA no change NA NA 17:5192163 17:12894940 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr17:7.54Mb]],deletion AC087500.1 NA ARHGAP44 NA NA NA NA NA NA -AC090114.3--UBE2H BS_GYA4V1RD NA 1.78901092763514 NA NA NA no change NA NA 7:128533730 7:129880971 ARRIBA other 11 0 high [INTRACHROMOSOMAL[chr7:1.21Mb]],inversion AC090114.3 NA UBE2H NA NA NA NA NA NA -AC090114.3--UBE2H BS_GYA4V1RD NA 1.78901092763514 NA NA NA no change NA NA 7:128533730 7:129879642 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:1.21Mb]],inversion AC090114.3 NA UBE2H NA NA NA NA NA NA -AC090403.1--CHST9 BS_KXMYBQ6N NA 2.9319360649989 NA NA NA differentially expressed NA NA 18:27581971 18:27142905 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr18:0.15Mb]],deletion AC090403.1 NA CHST9 NA NA NA NA NA NA -AC090630.1--AC090630.1(12556)/AC023513.1(124787) BS_M1T1K5WV NA NA NA NA NA NA NA NA 12:41909729 12:41945148 ARRIBA other 9 3 medium [],duplication AC090630.1 NA AC090630.1 AC023513.1 NA NA NA NA NA -AC090692.1--LDLRAD3 BS_45J79YTF NA 3.93915698155753 NA NA NA differentially expressed NA NA 11:35918011 11:36036103 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr11:0.03Mb],LOCAL_INVERSION:-:+:[25242]],inversion AC090692.1 NA LDLRAD3 NA NA NA NA NA NA -AC090692.1--LDLRAD3 BS_45J79YTF NA 3.93915698155753 NA NA NA differentially expressed NA NA 11:35918011 11:36227085 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.03Mb],LOCAL_INVERSION:-:+:[25242]],inversion AC090692.1 NA LDLRAD3 NA NA NA NA NA NA -AC090771.2--PTPRN2 BS_QWTE1CWR NA -0.446823940803582 NA NA NA no change NA NA 18:60129655 7:157823990 ARRIBA other 13 1 high [INTERCHROMOSOMAL[chr18--chr7]],translocation/5'-5' AC090771.2 NA PTPRN2 NA NA NA NA NA NA -AC090833.1--C2CD3 BS_B1C6GZ84 NA 1.77062823658528 NA NA NA no change NA NA 11:28741908 11:74037698 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr11:44.95Mb]],inversion AC090833.1 NA C2CD3 NA NA NA NA NA NA -AC091078.1--AC112693.3(11606)/AC112693.1(37544) BS_SAA624A4 NA NA NA NA NA NA NA NA 15:93373585 15:93219654 ARRIBA other 3 2 high [],duplication AC091078.1 NA AC112693.3 AC112693.1 NA NA NA NA NA -AC091167.7--CPQ BS_MM20BVW9 NA 3.17545755199143 NA NA NA differentially expressed NA NA 15:90295226 8:97066009 ARRIBA other 38 1 high [INTERCHROMOSOMAL[chr15--chr8]],translocation AC091167.7 NA CPQ NA NA NA NA NA NA -AC091167.7--CPQ BS_MM20BVW9 NA 3.17545755199143 NA NA NA differentially expressed NA NA 15:90266398 8:97066009 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr15--chr8]],translocation AC091167.7 NA CPQ NA NA NA NA NA NA -AC091305.2--AC091305.1(55120)/AC091305.2(3385) BS_W9N9844Q NA NA NA NA NA NA NA NA 18:70531787 18:70486245 ARRIBA other 2 1 medium [],duplication AC091305.2 NA AC091305.1 AC091305.2 NA NA NA NA NA -AC091826.2--LINC00461 BS_0T17SY47 NA 1.75233117212064 NA NA NA no change NA NA 5:88498673 5:88508354 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_4PH1MBGR NA 5.24598924933812 NA NA NA differentially expressed NA NA 5:88498673 5:88508354 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_4SCWT0FX NA 5.25124703784262 NA NA NA differentially expressed NA NA 5:88498673 5:88508354 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_5PJCHF6V NA 6.66899022749448 NA NA NA differentially expressed NA NA 5:88498673 5:88508354 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_C6ZZ3FY5 NA 2.77284828209318 NA NA NA differentially expressed NA NA 5:88498673 5:88508354 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_DGTPWJ59 NA 1.22801022272357 NA NA NA no change NA NA 5:88498673 5:88508354 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_E3BAT4C1 NA 3.67727837619133 NA NA NA differentially expressed NA NA 5:88498673 5:88508354 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_E4QK839R NA 1.82987627609158 NA NA NA no change NA NA 5:88498673 5:88508354 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_E4QK839R NA 1.82987627609158 NA NA NA no change NA NA 5:88498673 5:88507691 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_EF775B3K NA 0.339185618679451 NA NA NA no change NA NA 5:88498673 5:88508354 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_M0QYNVK8 NA 3.57820076824432 NA NA NA differentially expressed NA NA 5:88498673 5:88508354 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_M85CXHDV NA 0.256972282510213 NA NA NA no change NA NA 5:88498673 5:88508354 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_P0QF87WC NA 2.04193515020174 NA NA NA differentially expressed NA NA 5:88498673 5:88508354 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_PKW05VZV NA 1.50840105354148 NA NA NA no change NA NA 5:88498673 5:88508354 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_PSW27ZTE NA 2.65485954006394 NA NA NA differentially expressed NA NA 5:88498673 5:88508354 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_SBFNFZ8B NA 0.69502765349741 NA NA NA no change NA NA 5:88498673 5:88508354 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_TGW6HC4X NA 1.81323939151374 NA NA NA no change NA NA 5:88498673 5:88508354 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_TGW6HC4X NA 1.81323939151374 NA NA NA no change NA NA 5:88498673 5:88542070 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_V3Z3DB4N NA 2.68020668909296 NA NA NA differentially expressed NA NA 5:88498673 5:88508354 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_VJ2S5DVS NA 5.59635648556949 NA NA NA differentially expressed NA NA 5:88498673 5:88508354 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_W80TJC27 NA 2.2712646436542 NA NA NA differentially expressed NA NA 5:88498673 5:88508354 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091826.2--LINC00461 BS_X4X1SFSE NA 3.57159712107958 NA NA NA differentially expressed NA NA 5:88498673 5:88508354 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA -AC091893.1(30565)/BTG4P1(6505)--AASS BS_6JHXXVR7 NA 2.58895379168952 NA NA NA differentially expressed NA NA 5:24780337 7:122133741 ARRIBA other 2 0 low [],translocation AC091893.1 BTG4P1 AASS NA NA NA NA NA NA -AC092070.2--ZNF665 BS_RGSMX7QD NA 1.77506858109718 NA NA NA no change NA NA 19:53205080 19:53179469 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_INVERSION:+:-:[3725]],duplication/5'-5' AC092070.2 NA ZNF665 NA NA TranscriptionFactor NA NA NA -AC092098.1(101174)/AC079791.1(125744)--CTTNBP2 BS_6DCSD5Y6 NA 6.06964331817141 NA NA NA differentially expressed NA NA 7:119052433 7:117784454 ARRIBA other 9 0 high [],deletion AC092098.1 AC079791.1 CTTNBP2 NA NA NA NA NA NA -AC092155.1--ADD2 BS_S6S7SK3P -0.65744681982494 0.102706349287686 NA NA no change no change NA NA 2:62613836 2:70713184 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr2:7.94Mb]],inversion/3'-3' AC092155.1 NA ADD2 NA NA NA NA NA NA -AC092167.1--AC073387.2(77213)/EIF3IP1(117648) BS_4D9DD103 NA -0.0570356705829783 NA 131.505650974633 NA no change NA differentially expressed 7:110432811 7:109841570 ARRIBA other 2 1 high [],deletion AC092167.1 NA AC073387.2 EIF3IP1 NA NA NA NA NA -AC092167.1--AC073387.2(77213)/EIF3IP1(117648) BS_5VQP0E6K NA -0.0570356705829783 NA 268.956198402554 NA no change NA differentially expressed 7:110432811 7:109841570 ARRIBA other 8 2 high [],deletion AC092167.1 NA AC073387.2 EIF3IP1 NA NA NA NA NA -AC092167.1--AC073387.2(77213)/EIF3IP1(117648) BS_CYEY58NY NA -0.0570356705829783 NA 163.407988075704 NA no change NA differentially expressed 7:110432811 7:109841570 ARRIBA other 3 0 medium [],deletion AC092167.1 NA AC073387.2 EIF3IP1 NA NA NA NA NA -AC092295.2--MDS2 BS_VJ2S5DVS NA -0.614811964606619 NA NA NA no change NA NA 19:36491155 1:23620108 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr19--chr1]],translocation/5'-5' AC092295.2 NA MDS2 NA NA CosmicCensus, Oncogene NA NA NA -AC092490.2--MFAP5 BS_WSQMAA33 NA 0.757970645132774 NA NA NA no change NA NA 12:8664115 12:8654346 ARRIBA other 29 0 high [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[1123]],duplication/5'-5' AC092490.2 NA MFAP5 NA NA NA NA NA NA -AC092542.1(9783)/LINC02469(56805)--LINC00989 BS_AM70R8RG NA 26.9057172630105 NA NA NA differentially expressed NA NA 4:79606956 4:79493152 ARRIBA other 3 1 high [],duplication AC092542.1 LINC02469 LINC00989 NA NA NA NA NA NA -AC092542.1(9783)/LINC02469(56805)--LINC00989 BS_WH5HDE0A NA 48.601140289165 NA NA NA differentially expressed NA NA 4:79606956 4:79493152 ARRIBA other 3 1 high [],duplication AC092542.1 LINC02469 LINC00989 NA NA NA NA NA NA -AC092666.1(143590)/ACTR3C(23671)--DPP6 BS_593HEWBF NA 0.271061466255446 0.601256332725349 NA NA no change no change NA 7:150220245 7:154446214 ARRIBA other 3 0 high [],inversion AC092666.1 ACTR3C DPP6 NA NA NA NA NA NA -AC092691.1--LSAMP(205156)/RNU6-1200P(199660) BS_QEYPFYHD NA 0.143061700704176 NA NA NA no change NA NA 3:117997182 3:117344545 ARRIBA other 1 0 low [],deletion AC092691.1 NA LSAMP RNU6-1200P NA TumorSuppressorGene NA NA NA -AC092691.1--LSAMP(326104)/RNU6-1200P(78712) BS_KVNGNETA NA -1.68753208384908 NA NA NA no change NA NA 3:117997182 3:117465493 ARRIBA other 2 0 medium [],deletion AC092691.1 NA LSAMP RNU6-1200P NA TumorSuppressorGene NA NA NA -AC092691.1--LSAMP(368662)/RNU6-1200P(36154) BS_EFE4YEK3 NA 1.15447624248303 NA NA NA no change NA NA 3:117997182 3:117508051 ARRIBA other 1 0 low [],deletion AC092691.1 NA LSAMP RNU6-1200P NA TumorSuppressorGene NA NA NA -AC092747.1(24031)/STK38L(58544)--MED21 BS_M4NVX721 NA -0.788738966938903 4.68675939517226 NA NA no change differentially expressed NA 12:27185424 12:27046158 ARRIBA other 2 1 medium [],duplication AC092747.1 STK38L MED21 NA NA NA Oncogene, Kinase NA NA -AC092747.1(24050)/STK38L(58525)--MED21 BS_W4HGV6E7 NA 0.114852936851555 4.29059101883183 NA NA no change differentially expressed NA 12:27185443 12:27030158 ARRIBA other 1 0 low [],duplication AC092747.1 STK38L MED21 NA NA NA Oncogene, Kinase NA NA -AC092747.2--MED21 BS_7BTZQKYY NA 0.20268619477806 NA NA NA no change NA NA 12:27185443 12:27030734 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_REARRANGEMENT:+:[55567]],duplication AC092747.2 NA MED21 NA NA NA NA NA NA -AC092747.2--MED21 BS_7BTZQKYY NA 0.20268619477806 NA NA NA no change NA NA 12:27135086 12:27046154 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_REARRANGEMENT:+:[55567]],duplication AC092747.2 NA MED21 NA NA NA NA NA NA -AC092747.2--MED21 BS_7BTZQKYY NA 0.20268619477806 NA NA NA no change NA NA 12:27123381 12:27046154 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_REARRANGEMENT:+:[55567]],duplication AC092747.2 NA MED21 NA NA NA NA NA NA -AC092821.3--AC092821.1 BS_XJTW0P8P NA NA NA NA NA NA NA NA 12:9584164 12:9564160 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:0.11Mb]],duplication AC092821.3 NA AC092821.1 NA NA NA NA NA NA -AC092821.3--AC092821.1 BS_XJTW0P8P NA NA NA NA NA NA NA NA 12:9606456 12:9564160 ARRIBA other 15 0 low [INTRACHROMOSOMAL[chr12:0.11Mb]],duplication AC092821.3 NA AC092821.1 NA NA NA NA NA NA -AC092821.3--AC092821.1 BS_XJTW0P8P NA NA NA NA NA NA NA NA 12:9622436 12:9564160 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:0.11Mb]],duplication AC092821.3 NA AC092821.1 NA NA NA NA NA NA -AC092920.1(48786)/MTND5P15(94095)--TBL1XR1 BS_G3RJTBZD NA 3.51323471934967 6.63059602907585 NA NA differentially expressed differentially expressed NA 3:176916624 3:177026474 ARRIBA other 3 0 medium [],duplication AC092920.1 MTND5P15 TBL1XR1 NA NA CosmicCensus NA NA NA -AC092920.1(79469)/MTND5P15(63412)--TBL1XR1 BS_W9N9844Q NA 3.62692865982039 12.6668602672558 NA NA differentially expressed differentially expressed NA 3:176947307 3:177098541 ARRIBA other 1 0 low [],duplication AC092920.1 MTND5P15 TBL1XR1 NA NA CosmicCensus NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_0BXY0F9N NA 1.42951921276432 1.42951921276432 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 4 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_0QYS36NR NA -0.282537655642635 -0.282537655642635 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 3 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_34201DKZ NA 1.76801594084253 1.76801594084253 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 5 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_3F4FQJMR NA 3.08952205512635 3.08952205512635 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 14 5 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_49BQS7Z6 NA 1.04492312882668 1.04492312882668 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 3 0 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_4FZS7TX4 NA 1.16001689222752 1.16001689222752 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 4 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_53M8PP88 NA 0.814120917817109 0.814120917817109 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 4 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_67Z63A2K NA 1.81110332002222 1.81110332002222 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 4 0 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_6H1C1ME9 NA 0.911740570836579 0.911740570836579 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 2 2 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_6MZ7FRZH NA 2.07585921675614 2.07585921675614 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 6 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_7BTZQKYY NA 3.03391243326376 3.03391243326376 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 29 2 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_7G42J2SK NA 2.00023951915392 2.00023951915392 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 4 0 low [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_8Q77HZ4R NA 2.27861976006903 2.27861976006903 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 4 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_8RHPJ740 NA 0.510766342589162 0.510766342589162 NA NA no change no change NA 3:167234890 3:167252211 ARRIBA other 4 0 low [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_AG3D3435 NA 1.36278944951391 1.36278944951391 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 5 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_AGS1HHGF NA 1.77342374282875 1.77342374282875 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 8 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_B741RZY9 NA 2.64198908716366 2.64198908716366 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 6 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_CZ3ER8DY NA 2.16441078642826 2.16441078642826 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 5 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_E1CGF3KV NA 2.06817253924602 2.06817253924602 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 2 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_EK5PCKY0 NA 2.21892826609571 2.21892826609571 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 5 2 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_FAVRBEW7 NA 2.84359787215596 2.84359787215596 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 23 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_H0QWRJE2 NA 1.12854589783251 1.12854589783251 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 3 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_HC44ZA0V NA 3.53837393981203 3.53837393981203 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 8 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_HZ707C55 NA 2.26627009774909 2.26627009774909 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 8 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_M1T1K5WV NA 1.70535661618997 1.70535661618997 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 6 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_MT15SGJN NA 0.874605149046071 0.874605149046071 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 2 2 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_NGHK9RZP NA 2.2827045350646 2.2827045350646 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 7 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_P0W5VJH4 NA 1.0365465914818 1.0365465914818 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 5 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_P78SMRBS NA 1.73807927328892 1.73807927328892 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 3 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_PKK3BZRG NA 3.77294001788334 3.77294001788334 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 12 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_Q5WZYWCT NA 3.12106849862737 3.12106849862737 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 5 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_QSTAVWGE NA 1.77761081301956 1.77761081301956 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 5 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_RGPSEMHC NA 1.73435474764069 1.73435474764069 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 2 0 low [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_RHD7XPNP NA 2.07089185585212 2.07089185585212 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 10 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_SAA624A4 NA 1.60768154333001 1.60768154333001 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 35 4 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_SDCNP7MW NA 2.26551698722985 2.26551698722985 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 4 0 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_SXCZ3CXN NA 1.71553317898009 1.71553317898009 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 7 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_TNRHHYNC NA 1.5508186722258 1.5508186722258 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 15 2 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_W4HGV6E7 NA 2.70303963294234 2.70303963294234 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 10 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_WFD0GE5X NA 1.5508186722258 1.5508186722258 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 4 0 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_WRHDP7WF NA 0.566498438389097 0.566498438389097 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 7 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_WYERXS4G NA 2.56761800070226 2.56761800070226 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 11 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_WYG77VVP NA 0.837571423024142 0.837571423024142 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 4 0 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_YE1MAQYJ NA 2.49068058026179 2.49068058026179 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 2 3 low [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_Z85M2R3N NA 3.30110326309551 3.30110326309551 NA NA differentially expressed differentially expressed NA 3:167234890 3:167282495 ARRIBA other 29 5 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(168570)/ZBBX(5397)--ZBBX BS_ZN8136D9 NA 1.73869875676518 1.73869875676518 NA NA no change no change NA 3:167234890 3:167282495 ARRIBA other 4 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(21807)/ZBBX(152160)--ZBBX BS_CZ3NA7KV NA 1.66231356246243 1.66231356246243 NA NA no change no change NA 3:167088127 3:167282495 ARRIBA other 2 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(33088)/ZBBX(140879)--ZBBX BS_7G42J2SK NA 2.00023951915392 2.00023951915392 NA NA differentially expressed differentially expressed NA 3:167099408 3:167282495 ARRIBA other 2 2 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(33088)/ZBBX(140879)--ZBBX BS_EK5PCKY0 NA 2.21892826609571 2.21892826609571 NA NA differentially expressed differentially expressed NA 3:167099408 3:167282495 ARRIBA other 2 0 low [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(74369)/ZBBX(99598)--ZBBX BS_7BTZQKYY NA 3.03391243326376 3.03391243326376 NA NA differentially expressed differentially expressed NA 3:167140689 3:167282495 ARRIBA other 18 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(74369)/ZBBX(99598)--ZBBX BS_8Q77HZ4R NA 2.27861976006903 2.27861976006903 NA NA differentially expressed differentially expressed NA 3:167140689 3:167282495 ARRIBA other 5 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(74369)/ZBBX(99598)--ZBBX BS_AGS1HHGF NA 1.77342374282875 1.77342374282875 NA NA no change no change NA 3:167140689 3:167282495 ARRIBA other 3 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(74369)/ZBBX(99598)--ZBBX BS_FAVRBEW7 NA 2.84359787215596 2.84359787215596 NA NA differentially expressed differentially expressed NA 3:167140689 3:167282495 ARRIBA other 7 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(74369)/ZBBX(99598)--ZBBX BS_FAVRBEW7 NA 2.84359787215596 2.84359787215596 NA NA differentially expressed differentially expressed NA 3:167140689 3:167282495 ARRIBA other 2 1 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(74369)/ZBBX(99598)--ZBBX BS_NGHK9RZP NA 2.2827045350646 2.2827045350646 NA NA differentially expressed differentially expressed NA 3:167140689 3:167282495 ARRIBA other 2 1 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(74369)/ZBBX(99598)--ZBBX BS_PKK3BZRG NA 3.77294001788334 3.77294001788334 NA NA differentially expressed differentially expressed NA 3:167140689 3:167282495 ARRIBA other 3 0 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(74369)/ZBBX(99598)--ZBBX BS_SAA624A4 NA 1.60768154333001 1.60768154333001 NA NA no change no change NA 3:167140689 3:167282495 ARRIBA other 8 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(74369)/ZBBX(99598)--ZBBX BS_TNRHHYNC NA 1.5508186722258 1.5508186722258 NA NA no change no change NA 3:167140689 3:167288983 ARRIBA other 2 2 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(74369)/ZBBX(99598)--ZBBX BS_TNRHHYNC NA 1.5508186722258 1.5508186722258 NA NA no change no change NA 3:167140689 3:167288983 ARRIBA other 2 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(74369)/ZBBX(99598)--ZBBX BS_W4HGV6E7 NA 2.70303963294234 2.70303963294234 NA NA differentially expressed differentially expressed NA 3:167140689 3:167282495 ARRIBA other 4 0 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092965.1(74369)/ZBBX(99598)--ZBBX BS_Z85M2R3N NA 3.30110326309551 3.30110326309551 NA NA differentially expressed differentially expressed NA 3:167140689 3:167282495 ARRIBA other 4 0 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA -AC092979.1--LINC02046(108424)/RPL38P1(187614) BS_1BWP5MCT NA NA NA 65.8394042931998 NA NA NA differentially expressed 3:148911257 3:148508380 ARRIBA other 3 0 high [],deletion AC092979.1 NA LINC02046 RPL38P1 NA NA NA NA NA -AC092979.1--LINC02046(47042)/RPL38P1(248996) BS_1BWP5MCT NA NA NA 65.8394042931998 NA NA NA differentially expressed 3:148911257 3:148446998 ARRIBA other 5 0 high [],deletion AC092979.1 NA LINC02046 RPL38P1 NA NA NA NA NA -AC093752.1--RPAP2 BS_8Q77HZ4R NA 2.33626727633304 NA NA NA differentially expressed NA NA 4:119532958 1:92380809 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr4--chr1]],translocation AC093752.1 NA RPAP2 NA NA NA NA NA NA -AC093849.1(7890)/HAND2(47038)--SCRG1 BS_N6NE6B3W NA -1.5413400987438 -0.283974110266511 NA NA no change no change NA 4:173477931 4:173384651 ARRIBA other 2 0 low [],duplication AC093849.1 HAND2 SCRG1 NA NA NA TranscriptionFactor NA NA -AC093903.1--AC093903.1(16874)/LINC00498(198) BS_49BQS7Z6 NA NA NA 0.874098933124856 NA NA NA no change 4:138281739 4:138298658 ARRIBA other 5 1 medium [],duplication AC093903.1 NA AC093903.1 LINC00498 NA NA NA NA NA -AC093903.1--AC093903.1(16874)/LINC00498(198) BS_SDCNP7MW NA NA NA 5.21439031706656 NA NA NA differentially expressed 4:138281739 4:138298658 ARRIBA other 6 0 medium [],duplication AC093903.1 NA AC093903.1 LINC00498 NA NA NA NA NA -AC093903.1--LINC00499 BS_GCQFGDTX NA -1.18012451849276 NA NA NA no change NA NA 4:138281739 4:138337154 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr4:0.03Mb],LOCAL_INVERSION:-:+:[27927]],duplication/5'-5' AC093903.1 NA LINC00499 NA NA NA NA NA NA -AC096553.1(72273)/AC060834.1(18265)--AC060834.2 BS_HD4EJYE3 NA 52.3463301064771 NA NA NA differentially expressed NA NA 7:9707976 7:9760063 ARRIBA other 8 1 medium [],duplication AC096553.1 AC060834.1 AC060834.2 NA NA NA NA NA NA -AC096642.1(162)/AL513283.1(135974)--LYPLAL1 BS_5PEFNDCY NA 0.752955120781541 NA NA NA no change NA NA 1:219273549 1:219193082 ARRIBA other 1 3 high [],duplication AC096642.1 AL513283.1 LYPLAL1 NA NA NA NA NA NA -AC096642.1(36530)/AL513283.1(99606)--LYPLAL1 BS_4W1DBAN4 NA 0.395586118279482 NA NA NA no change NA NA 1:219309917 1:219193082 ARRIBA other 1 2 high [],duplication AC096642.1 AL513283.1 LYPLAL1 NA NA NA NA NA NA -AC097066.1(292599)/LINC01748(73438)--LINC01748 BS_PZVHMSYN NA NA NA NA NA NA NA NA 1:60442278 1:60600250 ARRIBA other 2 0 high [],duplication AC097066.1 LINC01748 LINC01748 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_34201DKZ NA 7.68440353345609 NA NA NA differentially expressed NA NA 4:16426440 4:16256257 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_34201DKZ NA 7.68440353345609 NA NA NA differentially expressed NA NA 4:16426440 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_34201DKZ NA 7.68440353345609 NA NA NA differentially expressed NA NA 4:16400533 4:16320065 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_3F4FQJMR NA 6.51871330106399 NA NA NA differentially expressed NA NA 4:16426440 4:16256257 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_3F4FQJMR NA 6.51871330106399 NA NA NA differentially expressed NA NA 4:16426440 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_3F4FQJMR NA 6.51871330106399 NA NA NA differentially expressed NA NA 4:16426440 4:16320065 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_3F4FQJMR NA 6.51871330106399 NA NA NA differentially expressed NA NA 4:16400533 4:16320065 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_470DYRJQ NA 4.99178972252842 NA NA NA differentially expressed NA NA 4:16426440 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_470DYRJQ NA 4.99178972252842 NA NA NA differentially expressed NA NA 4:16421133 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_470DYRJQ NA 4.99178972252842 NA NA NA differentially expressed NA NA 4:16426440 4:16256257 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_470DYRJQ NA 4.99178972252842 NA NA NA differentially expressed NA NA 4:16426440 4:16288884 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_6VPKXXMR NA 7.27681287171568 NA NA NA differentially expressed NA NA 4:16426440 4:16238771 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_6VPKXXMR NA 7.27681287171568 NA NA NA differentially expressed NA NA 4:16421133 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_7BTZQKYY NA 9.11174575257114 NA NA NA differentially expressed NA NA 4:16426440 4:16320065 ARRIBA other 8 0 high [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_7BTZQKYY NA 9.11174575257114 NA NA NA differentially expressed NA NA 4:16426440 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_7BTZQKYY NA 9.11174575257114 NA NA NA differentially expressed NA NA 4:16421133 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_7BTZQKYY NA 9.11174575257114 NA NA NA differentially expressed NA NA 4:16400533 4:16256257 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_7BTZQKYY NA 9.11174575257114 NA NA NA differentially expressed NA NA 4:16426440 4:16288884 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_8Q77HZ4R NA 8.99061370464678 NA NA NA differentially expressed NA NA 4:16426440 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_8RHPJ740 NA 6.21677559579311 NA NA NA differentially expressed NA NA 4:16426440 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_8RHPJ740 NA 6.21677559579311 NA NA NA differentially expressed NA NA 4:16426440 4:16320065 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_9NJHQE9F NA 8.78234211443383 NA NA NA differentially expressed NA NA 4:16426440 4:16238771 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_9NJHQE9F NA 8.78234211443383 NA NA NA differentially expressed NA NA 4:16426440 4:16256257 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_9NJHQE9F NA 8.78234211443383 NA NA NA differentially expressed NA NA 4:16426440 4:16320065 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_E4F1D721 NA 7.97276410545368 NA NA NA differentially expressed NA NA 4:16426440 4:16256257 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_E4F1D721 NA 7.97276410545368 NA NA NA differentially expressed NA NA 4:16426440 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_E4F1D721 NA 7.97276410545368 NA NA NA differentially expressed NA NA 4:16426440 4:16320065 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_FAVRBEW7 NA 7.44364163327675 NA NA NA differentially expressed NA NA 4:16434138 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_FAVRBEW7 NA 7.44364163327675 NA NA NA differentially expressed NA NA 4:16426440 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_FAVRBEW7 NA 7.44364163327675 NA NA NA differentially expressed NA NA 4:16421133 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_FAVRBEW7 NA 7.44364163327675 NA NA NA differentially expressed NA NA 4:16426440 4:16256257 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_FAVRBEW7 NA 7.44364163327675 NA NA NA differentially expressed NA NA 4:16426440 4:16288884 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_NRPG5K4K NA 4.72388867966907 NA NA NA differentially expressed NA NA 4:16426440 4:16316430 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_NRPG5K4K NA 4.72388867966907 NA NA NA differentially expressed NA NA 4:16421133 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_NRPG5K4K NA 4.72388867966907 NA NA NA differentially expressed NA NA 4:16426440 4:16320065 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_Q5WZYWCT NA 8.05466453253463 NA NA NA differentially expressed NA NA 4:16426440 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_Q5WZYWCT NA 8.05466453253463 NA NA NA differentially expressed NA NA 4:16426440 4:16288884 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_Q5WZYWCT NA 8.05466453253463 NA NA NA differentially expressed NA NA 4:16426440 4:16320065 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_RCFQ31XF NA 4.9772574665117 NA NA NA differentially expressed NA NA 4:16426440 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_RCFQ31XF NA 4.9772574665117 NA NA NA differentially expressed NA NA 4:16426440 4:16320065 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_RHD7XPNP NA 7.84748222405159 NA NA NA differentially expressed NA NA 4:16426440 4:16238771 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_RHD7XPNP NA 7.84748222405159 NA NA NA differentially expressed NA NA 4:16426440 4:16320065 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_SAA624A4 NA 4.53742914367602 NA NA NA differentially expressed NA NA 4:16426440 4:16320065 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_SAA624A4 NA 4.53742914367602 NA NA NA differentially expressed NA NA 4:16426440 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_WRHDP7WF NA 4.96268512146208 NA NA NA differentially expressed NA NA 4:16426440 4:16320065 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_X67GTEM6 NA 7.16259281682195 NA NA NA differentially expressed NA NA 4:16426440 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_X67GTEM6 NA 7.16259281682195 NA NA NA differentially expressed NA NA 4:16421133 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_Z85M2R3N NA 6.86574665096261 NA NA NA differentially expressed NA NA 4:16421133 4:16238771 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC097515.1--TAPT1-AS1 BS_Z85M2R3N NA 6.86574665096261 NA NA NA differentially expressed NA NA 4:16400533 4:16238771 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA -AC099489.1--TOM1 BS_MGAMKKBD NA 5.63992836203042 NA NA NA differentially expressed NA NA 16:11460964 22:35332981 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr16--chr22]],translocation AC099489.1 NA TOM1 NA NA NA NA NA NA -AC099542.1--AC099542.1(62897)/AC107302.1(6748) BS_QX12J6W1 NA NA NA NA NA NA NA NA 3:81288079 3:81360242 ARRIBA other 1 0 low [],duplication AC099542.1 NA AC099542.1 AC107302.1 NA NA NA NA NA -AC099792.1--AC099792.1 BS_0WVJYM9R NA NA NA NA NA NA NA NA 1:60762796 1:60826585 ARRIBA other 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication AC099792.1 NA AC099792.1 NA NA NA NA NA NA -AC099792.1--AC099792.1 BS_8F9BDWY4 NA NA NA NA NA NA NA NA 1:60726410 1:60733522 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing AC099792.1 NA AC099792.1 NA NA NA NA NA NA -AC099792.1--AC099792.1 BS_D2K9C7XR NA NA NA NA NA NA NA NA 1:60762796 1:60826585 ARRIBA other 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication AC099792.1 NA AC099792.1 NA NA NA NA NA NA -AC099792.1--AC099792.1 BS_FJWZ3M7V NA NA NA NA NA NA NA NA 1:60726410 1:60733522 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing AC099792.1 NA AC099792.1 NA NA NA NA NA NA -AC099792.1--AC099792.1 BS_GG9W3J9Y NA NA NA NA NA NA NA NA 1:60726410 1:60733522 ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing AC099792.1 NA AC099792.1 NA NA NA NA NA NA -AC099792.1--AC099792.1 BS_JVA2NQFF NA NA NA NA NA NA NA NA 1:60726410 1:60733522 ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing AC099792.1 NA AC099792.1 NA NA NA NA NA NA -AC099792.1--AC099792.1 BS_KM2EX0K6 NA NA NA NA NA NA NA NA 1:60726410 1:60733522 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing AC099792.1 NA AC099792.1 NA NA NA NA NA NA -AC099792.1--AC099792.1 BS_MKM0EEN1 NA NA NA NA NA NA NA NA 1:60726410 1:60733522 ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing AC099792.1 NA AC099792.1 NA NA NA NA NA NA -AC099805.1--AC099805.1 BS_E4F1D721 NA NA NA NA NA NA NA NA 8:71527549 8:71535848 ARRIBA other 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr8:0.19Mb]],duplication AC099805.1 NA AC099805.1 NA NA NA NA NA NA -AC099805.1--AC099805.1 BS_Z85M2R3N NA NA NA NA NA NA NA NA 8:71527549 8:71535848 ARRIBA other 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr8:0.19Mb]],duplication AC099805.1 NA AC099805.1 NA NA NA NA NA NA -AC100757.2--NBEA BS_GCQFGDTX NA 1.3150246260551 NA NA NA no change NA NA 15:22360989 13:35109290 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr15--chr13]],translocation AC100757.2 NA NBEA NA NA CosmicCensus NA NA NA -AC100757.2--NBEA BS_SKGJ5SY9 NA 2.46760270425885 NA NA NA differentially expressed NA NA 15:22360989 13:35109290 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr15--chr13]],translocation AC100757.2 NA NBEA NA NA CosmicCensus NA NA NA -AC103718.1--FAM49B BS_7327SDAQ NA 0.356975990529047 NA NA NA no change NA NA 8:129679928 8:129903350 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr8:0.16Mb]],duplication AC103718.1 NA FAM49B NA NA NA NA NA NA -AC103718.1--LINC00976(136388)/LINC00977(114078) BS_2A5R9MEJ NA 9.1227160192992 NA 13.1814415311286 NA differentially expressed NA differentially expressed 8:129679928 8:129102389 ARRIBA other 3 0 high [],deletion AC103718.1 NA LINC00976 LINC00977 NA NA NA NA NA -AC103718.1--LINC00976(136388)/LINC00977(114078) BS_QB7YGKN1 NA 42.3361780037964 NA 14.580922398075 NA differentially expressed NA differentially expressed 8:129679928 8:129102389 ARRIBA other 3 0 high [],deletion AC103718.1 NA LINC00976 LINC00977 NA NA NA NA NA -AC103718.1--LINC00976(136388)/LINC00977(114078) BS_XG0DBWVT NA 51.3281308754797 NA 19.7976984427183 NA differentially expressed NA differentially expressed 8:129679928 8:129102389 ARRIBA other 2 0 medium [],deletion AC103718.1 NA LINC00976 LINC00977 NA NA NA NA NA -AC103746.1--NR2F2 BS_MVW01FPB NA 6.54740453565568 NA NA NA differentially expressed NA NA 15:96342998 15:96334076 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_REARRANGEMENT:+:[2690]],duplication AC103746.1 NA NR2F2 NA NA TranscriptionFactor NA NA NA -AC104009.1--AC006299.1(157962)/AC090092.1(61545) BS_MN5XVP5A NA NA NA NA NA NA NA NA 11:22301280 11:23103355 ARRIBA other 7 1 medium [],inversion AC104009.1 NA AC006299.1 AC090092.1 NA NA NA NA NA -AC104042.1(760540)/SNORA31(243718)--SHANK2 BS_7G42J2SK NA 1.28878329219183 2.69835571830002 NA NA no change differentially expressed NA 11:37458407 11:71226669 ARRIBA other 1 0 low [],inversion AC104042.1 SNORA31 SHANK2 NA NA NA NA NA NA -AC104057.1--AC114501.2(55910)/AC104057.1(6423) BS_3NWQXPQV 49.115628535798 NA NA 49.115628535798 differentially expressed NA NA differentially expressed 7:65619153 7:65610654 ARRIBA other 22 0 medium [],duplication AC104057.1 NA AC114501.2 AC104057.1 NA NA NA NA NA -AC104451.1--TBC1D3G(15300)/TBC1D3H(27472) BS_9G69F50J NA -0.28163877689047 NA -0.57506938757435 NA no change NA no change 3:17706079 17:36350059 ARRIBA other 6 0 low [],translocation AC104451.1 NA TBC1D3G TBC1D3H NA NA NA NA NA -AC104574.2--AC018618.1 BS_NRPG5K4K NA NA NA NA NA NA NA NA 15:61507178 15:61639712 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_REARRANGEMENT:-:[3900]],duplication AC104574.2 NA AC018618.1 NA NA NA NA NA NA -AC104819.3--AC104819.3(52384)/AC079795.1(1943) BS_B741RZY9 NA NA NA NA NA NA NA NA 4:151352900 4:151405608 ARRIBA other 4 0 high [],duplication AC104819.3 NA AC104819.3 AC079795.1 NA NA NA NA NA -AC104819.3--AC104819.3(52384)/AC079795.1(1943) BS_Z85M2R3N NA NA NA NA NA NA NA NA 4:151352900 4:151405608 ARRIBA other 6 0 medium [],duplication AC104819.3 NA AC104819.3 AC079795.1 NA NA NA NA NA -AC104836.1--TGFBR3 BS_SXRS2P6T NA 3.4412276777406 NA NA NA differentially expressed NA NA 1:92080720 1:91806792 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr1:0.17Mb]],duplication/5'-5' AC104836.1 NA TGFBR3 NA NA TumorSuppressorGene, Oncogene NA NA NA -AC105052.1--DOCK4 BS_6JHXXVR7 NA 0.558604988893902 NA NA NA no change NA NA 7:102639123 7:112004131 ARRIBA in-frame 6 0 medium [INTRACHROMOSOMAL[chr7:9.08Mb]],duplication AC105052.1 NA DOCK4 NA NA NA NA NA NA -AC105389.3--GRXCR1 BS_YCREDZTJ NA 32.9450437146888 NA NA NA differentially expressed NA NA 4:41766135 4:43020354 ARRIBA other 17 1 high [INTRACHROMOSOMAL[chr4:1.07Mb]],inversion/3'-3' AC105389.3 NA GRXCR1 NA NA NA NA NA NA -AC105417.1(74307)/AC082650.1(45774)--LINC02465 BS_CXVJK2FY NA NA NA NA NA NA NA NA 4:129253401 4:129780010 ARRIBA other 13 0 high [],deletion AC105417.1 AC082650.1 LINC02465 NA NA NA NA NA NA -AC106729.1--CNTNAP4 BS_70FFPA51 NA 2.3699993788287 NA NA NA differentially expressed NA NA 16:76736479 16:76535545 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr16:0.18Mb]],duplication AC106729.1 NA CNTNAP4 NA NA NA NA NA NA -AC106729.1--CNTNAP4 BS_70FFPA51 NA 2.3699993788287 NA NA NA differentially expressed NA NA 16:76736479 16:76553283 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr16:0.18Mb]],duplication AC106729.1 NA CNTNAP4 NA NA NA NA NA NA -AC106729.1--MON1B BS_6YMJ621P NA 2.66311298445378 NA NA NA differentially expressed NA NA 16:76736479 16:77191476 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr16:0.26Mb]],deletion AC106729.1 NA MON1B NA NA NA NA NA NA -AC106779.1--CDH13 BS_6DCSD5Y6 NA 1.30452286531494 NA NA NA no change NA NA 16:56729506 16:83344862 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr16:25.90Mb]],inversion AC106779.1 NA CDH13 NA NA TumorSuppressorGene, Oncogene NA NA NA -AC106791.2(8067)/NPY6R(31190)--AC106791.1 BS_92VDQ0NE NA NA -0.720057520944746 NA NA NA no change NA 5:137770003 5:137859263 ARRIBA other 1 0 low [],duplication AC106791.2 NPY6R AC106791.1 NA NA NA NA NA NA -AC108467.1(143864)/THAP12P9(127737)--TMEM165 BS_TGS109T3 NA 1.97336497292845 NA NA NA no change NA NA 4:45195516 4:55411614 ARRIBA other 2 0 low [],deletion AC108467.1 THAP12P9 TMEM165 NA NA NA NA NA NA -AC108721.1--IRAK3 BS_7327SDAQ NA 2.00142867098913 NA NA NA differentially expressed NA NA 12:59373640 12:66203711 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr12:6.78Mb]],deletion/3'-3' AC108721.1 NA IRAK3 NA NA Kinase, Kinase NA NA NA -AC109927.1--ELF2 BS_23M72ABG NA 1.64190304470393 NA NA NA no change NA NA 4:138995912 4:139139497 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_REARRANGEMENT:-:[15466]],duplication AC109927.1 NA ELF2 NA NA TranscriptionFactor NA NA NA -AC109927.1--ELF2 BS_H3FE3TH9 NA 1.24282836568418 NA NA NA no change NA NA 4:138945519 4:139139497 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_REARRANGEMENT:-:[15466]],duplication AC109927.1 NA ELF2 NA NA TranscriptionFactor NA NA NA -AC109927.1--ELF2 BS_H3FE3TH9 NA 1.24282836568418 NA NA NA no change NA NA 4:139012595 4:139059607 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_REARRANGEMENT:-:[15466]],duplication AC109927.1 NA ELF2 NA NA TranscriptionFactor NA NA NA -AC110023.1--AC091078.1 BS_044XZ8ST NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 2 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_0BXY0F9N NA NA NA NA NA NA NA NA 15:93634194 15:93557472 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_0BXY0F9N NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_196BBNEJ NA NA NA NA NA NA NA NA 15:93656437 15:93569438 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_196BBNEJ NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_196BBNEJ NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_2A162JH9 NA NA NA NA NA NA NA NA 15:93656437 15:93553605 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_2A162JH9 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_2A162JH9 NA NA NA NA NA NA NA NA 15:93593359 15:93557472 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_3F4FQJMR NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_49BQS7Z6 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 2 2 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_49BQS7Z6 NA NA NA NA NA NA NA NA 15:93593359 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_49BQS7Z6 NA NA NA NA NA NA NA NA 15:93592733 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_52C576HH NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_53M8PP88 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_5PEFNDCY NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_5PEFNDCY NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_6H1C1ME9 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_78QX3XDF NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_7BTZQKYY NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_7BTZQKYY NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_7GJT4A6A NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_84XCR9GG NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_84XCR9GG NA NA NA NA NA NA NA NA 15:93592733 15:93569438 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_8Q77HZ4R NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_8ZP3CBQA NA NA NA NA NA NA NA NA 15:93592733 15:93557472 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_8ZP3CBQA NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_9755PSCS NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_9755PSCS NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_9HSGV9TJ NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_9HSGV9TJ NA NA NA NA NA NA NA NA 15:93592733 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_AG3D3435 NA NA NA NA NA NA NA NA 15:93657737 15:93530237 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_AG3D3435 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_B1C6GZ84 NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_B1C6GZ84 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_B1C6GZ84 NA NA NA NA NA NA NA NA 15:93592733 15:93557472 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_B741RZY9 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_B741RZY9 NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_B741RZY9 NA NA NA NA NA NA NA NA 15:93593359 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_C51RB0YR NA NA NA NA NA NA NA NA 15:93593359 15:93557472 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_C51RB0YR NA NA NA NA NA NA NA NA 15:93592733 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_C6ZZ3FY5 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_C6ZZ3FY5 NA NA NA NA NA NA NA NA 15:93592733 15:93498521 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_C6ZZ3FY5 NA NA NA NA NA NA NA NA 15:93592733 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_C80S5N37 NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_C80S5N37 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_D8N31T39 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_D8N31T39 NA NA NA NA NA NA NA NA 15:93593359 15:93557472 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_D8N31T39 NA NA NA NA NA NA NA NA 15:93592733 15:93557472 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_ERJAJ0KA NA NA NA NA NA NA NA NA 15:93592733 15:93557603 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_F6Z5HFWH NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_F6Z5HFWH NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_FJZPQZ2C NA NA NA NA NA NA NA NA 15:93656437 15:93557472 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_FJZPQZ2C NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_FJZPQZ2C NA NA NA NA NA NA NA NA 15:93593359 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_GR46VD0Q NA NA NA NA NA NA NA NA 15:93634194 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_GW0GKWMS NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_HZ707C55 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_JX449BF5 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_M0QYNVK8 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_M1T1K5WV NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_MKM0EEN1 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 7 1 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_MKM0EEN1 NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_MWWZBQ60 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_MWWZBQ60 NA NA NA NA NA NA NA NA 15:93592733 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_N6N147BY NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 2 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_P78SMRBS NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_Q5WZYWCT NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 2 2 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_QSTAVWGE NA NA NA NA NA NA NA NA 15:93656437 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_QSTAVWGE NA NA NA NA NA NA NA NA 15:93592733 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_R7HZCZ8B NA NA NA NA NA NA NA NA 15:93656437 15:93557472 ARRIBA other 2 0 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_RGSMX7QD NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_RHD7XPNP NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_RHD7XPNP NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_S0175QKX NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_SAA624A4 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_SES41DAX NA NA NA NA NA NA NA NA 15:93593359 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_TNRHHYNC NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_TNRHHYNC NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_TNRHHYNC NA NA NA NA NA NA NA NA 15:93593359 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_TNRHHYNC NA NA NA NA NA NA NA NA 15:93592733 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_VJVDJABP NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_VJVDJABP NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_W4HGV6E7 NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_W4HGV6E7 NA NA NA NA NA NA NA NA 15:93593359 15:93557472 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_W6AC5J3C NA NA NA NA NA NA NA NA 15:93592733 15:93557472 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_W6AC5J3C NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_W6AC5J3C NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_W6AC5J3C NA NA NA NA NA NA NA NA 15:93593359 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_WFD0GE5X NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_WFD0GE5X NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_WGK8ZMVA NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_WGK8ZMVA NA NA NA NA NA NA NA NA 15:93593359 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_WRHDP7WF NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_WRHDP7WF NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_WRHDP7WF NA NA NA NA NA NA NA NA 15:93593359 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_X67GTEM6 NA NA NA NA NA NA NA NA 15:93656437 15:93557472 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_X67GTEM6 NA NA NA NA NA NA NA NA 15:93592733 15:93569438 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_YE1MAQYJ NA NA NA NA NA NA NA NA 15:93592733 15:93553605 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_YE1MAQYJ NA NA NA NA NA NA NA NA 15:93592733 15:93557472 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110023.1--AC091078.1 BS_ZN8136D9 NA NA NA NA NA NA NA NA 15:93593359 15:93553605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA -AC110751.1--AC105383.1 BS_1T19NFJ8 NA NA NA NA NA NA NA NA 4:132985512 4:133078462 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr4:0.09Mb],LOCAL_REARRANGEMENT:-:[86634]],duplication AC110751.1 NA AC105383.1 NA NA NA NA NA NA -AC110751.1--AC105383.1 BS_2XD3MNKD NA NA NA NA NA NA NA NA 4:132985512 4:133078462 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr4:0.09Mb],LOCAL_REARRANGEMENT:-:[86634]],duplication AC110751.1 NA AC105383.1 NA NA NA NA NA NA -AC110751.1--AC105383.1 BS_NT9NZYFD NA NA NA NA NA NA NA NA 4:132985512 4:133116511 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr4:0.09Mb],LOCAL_REARRANGEMENT:-:[86634]],duplication AC110751.1 NA AC105383.1 NA NA NA NA NA NA -AC119674.1--CEBPD BS_AD4JPN9Q NA 1.28529494296112 NA NA NA no change NA NA 1:56422678 8:47737462 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr1--chr8]],translocation AC119674.1 NA CEBPD NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -AC122707.1--AC122707.1(157958)/RNF180(26843) BS_DGTPWJ59 NA NA NA 4.96897628052695 NA NA NA differentially expressed 5:63973045 5:64139001 ARRIBA other 4 0 medium [],duplication AC122707.1 NA AC122707.1 RNF180 NA NA NA TumorSuppressorGene NA -AC123023.1--LINC01811(106334)/FECHP1(203430) BS_JTMXAMB7 29.6479045200986 NA NA -0.0893017439043701 differentially expressed NA NA no change 3:34203308 3:34669211 ARRIBA other 2 0 medium [],deletion AC123023.1 NA LINC01811 FECHP1 NA NA NA NA NA -AC123023.1--LINC01811(106334)/FECHP1(203430) BS_M84H3KXA 45.0236901536384 NA NA -0.0893017439043701 differentially expressed NA NA no change 3:34203308 3:34669211 ARRIBA other 3 0 medium [],deletion AC123023.1 NA LINC01811 FECHP1 NA NA NA NA NA -AC124944.3(4441)/SDHAP1(822)--SDHAP1 BS_3P20Q2C3 3.2584799759256 1.36088656327957 1.36088656327957 NA differentially expressed no change no change NA 3:195958926 3:195960086 ARRIBA other 1 1 low [],duplication AC124944.3 SDHAP1 SDHAP1 NA NA NA NA NA NA -AC124944.3(4441)/SDHAP1(822)--SDHAP1 BS_FAQQ0GCQ 0.719986153569145 -0.318144661039836 -0.318144661039836 NA no change no change no change NA 3:195958926 3:195960086 ARRIBA other 1 1 low [],duplication AC124944.3 SDHAP1 SDHAP1 NA NA NA NA NA NA -AC124944.3(4441)/SDHAP1(822)--SDHAP1 BS_MWWZBQ60 2.6212343669566 0.642247181326615 0.642247181326615 NA differentially expressed no change no change NA 3:195958926 3:195960086 ARRIBA other 2 0 low [],duplication AC124944.3 SDHAP1 SDHAP1 NA NA NA NA NA NA -AC126755.1--RN7SL714P(35438)/AL132719.1(110030) BS_K2FHZGTK NA NA NA NA NA NA NA NA 16:18343617 14:98387102 ARRIBA other 2 1 medium [],translocation AC126755.1 NA RN7SL714P AL132719.1 NA NA NA NA NA -AC131532.1(81292)/AC126471.1(143674)--AC131532.1 BS_5JM573JC NA NA NA NA NA NA NA NA 12:85424204 12:85342472 ARRIBA other 5 0 medium [],duplication AC131532.1 AC126471.1 AC131532.1 NA NA NA NA NA NA -AC131532.1(81292)/AC126471.1(143674)--AC131532.1 BS_67Z63A2K NA NA NA NA NA NA NA NA 12:85424204 12:85342472 ARRIBA other 2 1 high [],duplication AC131532.1 AC126471.1 AC131532.1 NA NA NA NA NA NA -AC131532.1(81292)/AC126471.1(143674)--AC131532.1 BS_VA5T4KAA NA NA NA NA NA NA NA NA 12:85424204 12:85342472 ARRIBA other 2 1 high [],duplication AC131532.1 AC126471.1 AC131532.1 NA NA NA NA NA NA -AC132008.2--THRB BS_FAQQ0GCQ NA -0.187673119892198 NA NA NA no change NA NA 3:197619740 3:24337371 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr3:173.08Mb]],deletion AC132008.2 NA THRB NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -AC135895.1--AC083805.3(33019)/AC084033.3(1663) BS_X23724NJ NA NA NA NA NA NA NA NA 12:65019521 12:57929865 ARRIBA other 3 1 medium [],deletion AC135895.1 NA AC083805.3 AC084033.3 NA NA NA NA NA -AC136759.1--AC136759.1 BS_4W1DBAN4 NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_6MY8W3H0 NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_92VDQ0NE NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_AKRHBPNZ NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_AMQGM1V9 NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 12 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_CREQ97QC NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 5 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_DMZP9G1H NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 7 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_HCP5C912 NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 16 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_K5802F84 NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_KPT2WPHW NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 6 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_TG93XC55 NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 5 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_VMMJYN8Z NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_VNE0ZPBS NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_WCRKYV0T NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 12 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_XJTW0P8P NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 11 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_YMAJC22S NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_ZH1FBX50 NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC136759.1--AC136759.1 BS_ZR96A4FH NA NA NA NA NA NA NA NA 11:49576906 11:49576046 ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_03FT4S8B NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 13 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_063ERW0R NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_0C7VZC0A NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_1N9XZXGE NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_29X4ZX6Q NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_2AR3AP0N NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_2SFTWNVE NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 15 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_2Z1MKS84 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 21 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_34201DKZ NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 14 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_37GTVG4N NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_399RPKC9 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_39CGACC7 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_3F5PR9GS NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_3P20Q2C3 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 13 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_42DY6WS7 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_4HQ3T2NC NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_4NF35AF6 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 13 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_4QW2S1Q8 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_4T0HPZDC NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_4Y6BCYK5 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_55JW3HFM NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_5GNQC2FF NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_5PJCHF6V NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_5PV5N4HQ NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_742RHK1M NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_7B89YR6K NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_7Z93ZYMS NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_84XCR9GG NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_8F9BDWY4 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_8ZP3CBQA NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 17 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_90B22NGP NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 23 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_9BJARSX3 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 24 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_9V633J1X NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 39 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_ABYF92Z9 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_AGS1HHGF NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_AMZ70B6F NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_B24PKKQB NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_BA6AZWB3 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 23 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_BJDNWMJH NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_CXVGG342 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_CXVJK2FY NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_CYEY58NY NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 14 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_CZ3ER8DY NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_D8N31T39 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_DFWFBYSN NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_DV86M0Y7 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 32 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_DVCQ8XDZ NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_DY88N5ZT NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_DY9NTFQR NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 14 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_E4QK839R NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_E60JZ9Z3 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_FAVRBEW7 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_GC3CH9TY NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_GCQFGDTX NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 15 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_H3Y8FWHV NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_HCP5C912 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_HD4EJYE3 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_HHPA8NJ2 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_J60G8DMK NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 17 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_J8G4SH4Z NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 28 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_JT82QGXF NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_K81DR8XG NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_KVNGNETA NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_KX6J8TRK NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_M1T1K5WV NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 13 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_MBSTWZA6 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_MVW01FPB NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 28 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_MX23ZY0Y NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 27 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_N4B1SZZH NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_N6NE6B3W NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 16 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_NNPEC7W1 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_NT9NZYFD NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_P0QF87WC NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_P4D8Y3S8 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_P9JP6JFA NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_PJPGVD62 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_QB7YGKN1 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 14 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_QC3XCE6X NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_QPPPGYP4 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_QWNBZ9RJ NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_R439VVPK NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_RD4D5F9F NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_S1M423AB NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_S69QZAJR NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 16 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_SHMC4902 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_TM9MH0RP NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 16 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_VMQMGSJY NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_VNK9XYV9 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_VVFBW0YH NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_VXEFKW5P NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_WE3Q8A73 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_X67GTEM6 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_XBQZYS8G NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_XHCYEE2S NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_YA8RBGD8 NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_YE1MAQYJ NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_YNEQJ6AH NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_Z1A875MW NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_Z6MC4N8D NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_Z8YZ6QGS NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_ZF34SJGN NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_ZR96A4FH NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_ZVWE73JZ NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC138932.1--AC136443.2 BS_ZWR9W4FX NA NA NA NA NA NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA -AC139143.1(122)/SYT8(24090)--ACTB BS_996ZS2A4 NA 2.25874482149477 0.0254018984291864 NA NA differentially expressed no change NA 11:1804217 7:5529665 ARRIBA other 6 0 medium [],translocation AC139143.1 SYT8 ACTB NA NA Oncogene NA NA NA -AC139491.3--AC140125.2(931)/AC140125.1(5877) BS_052PZFMK NA NA NA NA NA NA NA NA 5:176040847 5:177795327 ARRIBA other 3 0 medium [],inversion AC139491.3 NA AC140125.2 AC140125.1 NA NA NA NA NA -AC139491.5--FAM153B BS_7FWZ518S NA -0.0158902381708584 NA NA NA no change NA NA 5:176137278 5:176119545 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:+:[4899]],duplication AC139491.5 NA FAM153B NA NA NA NA NA NA -AC139491.5--FAM153B BS_FEPRNEXX NA 0.511272525133158 NA NA NA no change NA NA 5:176137278 5:176119545 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:+:[4899]],duplication AC139491.5 NA FAM153B NA NA NA NA NA NA -AC139491.5--FAM153B BS_MF47B9ZW NA 0.19300366977181 NA NA NA no change NA NA 5:176137278 5:176119545 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:+:[4899]],duplication AC139491.5 NA FAM153B NA NA NA NA NA NA -AC139718.1--AC004704.1 BS_8D0NYM46 NA NA NA NA NA NA NA NA 4:111808397 4:111829050 ARRIBA other 6 1 medium [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_REARRANGEMENT:-:[17187]],duplication AC139718.1 NA AC004704.1 NA NA NA NA NA NA -AC241585.2--PDE4DIP BS_2EN3X6HB 1.2647876379454 -0.614460514418895 NA NA no change no change NA NA 1:145214677 1:148879699 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr1:3.59Mb]],duplication/5'-5' AC241585.2 NA PDE4DIP NA NA CosmicCensus, Oncogene NA NA NA -AC241952.1--HSD3BP1 BS_29X4ZX6Q NA 15.2439141465329 NA NA NA differentially expressed NA NA 1:120489811 1:119471095 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr1:1.02Mb]],inversion AC241952.1 NA HSD3BP1 NA NA NA NA NA NA -AC244154.1--AC136604.1 BS_TA9WP4TH NA NA NA NA NA NA NA NA 17:38256898 5:179652294 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr17--chr5]],translocation AC244154.1 NA AC136604.1 NA NA NA NA NA NA -AC244197.3--CXorf40A BS_9F09XV62 NA 5.04263625937464 NA NA NA differentially expressed NA NA X:149490314 X:149542019 ARRIBA frameshift 36 3 high [INTRACHROMOSOMAL[chrX:0.01Mb],LOCAL_INVERSION:-:+:[6420]],inversion AC244197.3 NA CXorf40A NA NA NA NA NA NA -AC245123.1--AC246817.2 BS_MD3DT41J NA NA NA NA NA NA NA NA 8:2595565 8:2705286 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:-:[42697]],duplication AC245123.1 NA AC246817.2 NA NA NA NA NA NA -AC245123.1--AC246817.2 BS_MD3DT41J NA NA NA NA NA NA NA NA 8:2595565 8:2678939 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:-:[42697]],duplication AC245123.1 NA AC246817.2 NA NA NA NA NA NA -AC245407.1--AC245407.2(42882)/AC245407.1(9730) BS_QRDT19KS NA NA NA NA NA NA NA NA 1:146516446 1:146504741 ARRIBA other 3 0 medium [],duplication AC245407.1 NA AC245407.2 AC245407.1 NA NA NA NA NA -AC245595.1--RABGAP1L BS_KE56MMY0 NA 0.852315175378658 NA NA NA no change NA NA 1:144245686 1:174506941 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:29.91Mb]],duplication/5'-5' AC245595.1 NA RABGAP1L NA NA Oncogene NA NA NA -ACACA--SYNRG BS_052PZFMK 2.46716294443643 2.93492908385973 NA NA differentially expressed differentially expressed NA NA 17:37330173 17:37519071 ARRIBA frameshift 5 1 high [CCLE,INTRACHROMOSOMAL[chr17:0.11Mb]],duplication ACACA NA SYNRG NA NA NA NA NA NA -ACACB--NF1 BS_1A6MQ9ZA -0.152660331336249 0.540535682527793 NA NA no change no change NA NA 12:109242593 17:31258345 ARRIBA in-frame 5 0 high [INTERCHROMOSOMAL[chr12--chr17]],translocation ACACB NA NF1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -ACACB--NF1 BS_40MP5BWR 1.25872867571542 1.14501883164291 NA NA no change no change NA NA 12:109241281 17:31258344 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr12--chr17]],translocation ACACB NA NF1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -ACAD11--CSTA BS_FAQQ0GCQ -1.72926365262437 3.41641154592532 NA NA no change differentially expressed NA NA 3:132659603 3:122341439 ARRIBA frameshift 7 2 high [INTRACHROMOSOMAL[chr3:10.22Mb]],inversion ACAD11 NA CSTA NA NA Oncogene NA NA NA -ACAT1(1082)/NPAT(8357)--ACAT1 BS_DGTPWJ59 2.46301877565393 2.46301877565393 3.707035540728 NA differentially expressed differentially expressed differentially expressed NA 11:108148858 11:108131907 ARRIBA other 1 0 low [],duplication ACAT1 NPAT ACAT1 NA NA NA NA NA NA -ACAT1(1082)/NPAT(8357)--ACAT1 BS_FWMJPKCV 0.217062651530406 0.217062651530406 2.5631004382484 NA no change no change differentially expressed NA 11:108148858 11:108133820 ARRIBA other 1 0 low [],duplication ACAT1 NPAT ACAT1 NA NA NA NA NA NA -ACAT1(1082)/NPAT(8357)--ACAT1 BS_N6NE6B3W -0.83313824458811 -0.83313824458811 3.5051637622169 NA no change no change differentially expressed NA 11:108148858 11:108133820 ARRIBA other 1 1 low [],duplication ACAT1 NPAT ACAT1 NA NA NA NA NA NA -ACAT1(1082)/NPAT(8357)--ACAT1 BS_QEYPFYHD -0.586526227531495 -0.586526227531495 4.26010722760187 NA no change no change differentially expressed NA 11:108148858 11:108133820 ARRIBA other 1 0 low [],duplication ACAT1 NPAT ACAT1 NA NA NA NA NA NA -ACBD3--FP325317.1(87182)/BX088702.1(17333833) BS_W60RQAKK 3.86175247739608 3.20229730114963 NA NA differentially expressed differentially expressed NA NA 1:226149793 9:43213087 ARRIBA frameshift 9 2 medium [],translocation ACBD3 NA FP325317.1 BX088702.1 NA NA NA NA NA -ACBD5--AL049649.1(11635)/RPS11P1(32223) BS_6P50QTPP 0.639690858678563 NA NA -0.0715065844740018 no change NA NA no change 10:27208246 20:11313160 ARRIBA frameshift 3 0 medium [],translocation ACBD5 NA AL049649.1 RPS11P1 NA NA NA NA NA -ACBD5--AL049649.1(11635)/RPS11P1(32223) BS_W3R88RFP 0.596293556996202 NA NA 21.1207761325418 no change NA NA differentially expressed 10:27208246 20:11313160 ARRIBA frameshift 2 1 high [],translocation ACBD5 NA AL049649.1 RPS11P1 NA NA NA NA NA -ACBD5--RPS11P1(110570)/AL109837.2(79981) BS_W3R88RFP 0.596293556996202 21.1207761325418 NA NA no change differentially expressed NA NA 10:27208246 20:11456425 ARRIBA frameshift 3 0 high [],translocation ACBD5 NA RPS11P1 AL109837.2 NA NA NA NA NA -ACBD5--RPS11P1(152630)/AL109837.2(37921) BS_W3R88RFP 0.596293556996202 21.1207761325418 NA NA no change differentially expressed NA NA 10:27208246 20:11498485 ARRIBA frameshift 3 0 high [],translocation ACBD5 NA RPS11P1 AL109837.2 NA NA NA NA NA -ACBD5--RPS11P1(168866)/AL109837.2(21685) BS_6P50QTPP 0.639690858678563 -0.0715065844740018 NA NA no change no change NA NA 10:27207383 20:11514721 ARRIBA other 4 0 low [],translocation ACBD5 NA RPS11P1 AL109837.2 NA NA NA NA NA -ACBD6--ACBD6(3516)/Y_RNA(12546) BS_C6ZZ3FY5 -0.208156214663796 -0.208156214663796 NA -0.162236315085263 no change no change NA no change 1:180397516 1:180506470 ARRIBA frameshift 2 1 high [],duplication ACBD6 NA ACBD6 Y_RNA NA NA NA NA NA -ACBD6--AKNAD1 BS_1EBQ3T20 0.859821897146084 1.01597310839699 NA NA no change no change NA NA 1:180397516 1:108849576 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:71.41Mb]],deletion ACBD6 NA AKNAD1 NA NA NA NA NA NA -ACBD6--AL449266.1 BS_8ZD6J47V 1.0357823076617 NA NA NA no change NA NA NA 1:180397516 1:108849576 ARRIBA in-frame 1 0 low [],deletion ACBD6 NA AL449266.1 NA NA NA NA NA NA -ACBD6--GPSM2 BS_8ZD6J47V 1.0357823076617 -1.45855520407494 NA NA no change no change NA NA 1:180357586 1:108896864 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:71.34Mb]],duplication/3'-3' ACBD6 NA GPSM2 NA NA NA NA NA NA -ACBD6--Y_RNA(2648)/OVAAL(37209) BS_C6ZZ3FY5 -0.208156214663796 -0.162236315085263 NA 0.783742162782484 no change no change NA no change 1:180314692 1:180521767 ARRIBA frameshift 4 0 high [],duplication ACBD6 NA Y_RNA OVAAL NA NA NA NA NA -ACO1--AL583785.1(257272)/LINC00583(183188) BS_6P50QTPP -2.02652717981716 NA NA -0.0770514169362851 differentially expressed NA NA no change 9:32408651 9:13744783 ARRIBA frameshift 6 0 high [],inversion ACO1 NA AL583785.1 LINC00583 NA NA NA NA NA -ACO2--MKL1 BS_49BQS7Z6 -0.761701539955673 0.853867400303679 NA NA no change no change NA NA 22:41469182 22:40552367 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion ACO2 NA MKL1 NA NA Oncogene NA NA NA -ACO2--MKL1 BS_49BQS7Z6 -0.761701539955673 0.853867400303679 NA NA no change no change NA NA 22:41469182 22:40594735 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion ACO2 NA MKL1 NA NA Oncogene NA NA NA -ACO2--MKL1 BS_49BQS7Z6 -0.761701539955673 0.853867400303679 NA NA no change no change NA NA 22:41469508 22:40594735 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion ACO2 NA MKL1 NA NA Oncogene NA NA NA -ACO2--MKL1 BS_GXTFW99H -1.74488530548868 1.94372495531633 NA NA no change no change NA NA 22:41469182 22:40594735 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion ACO2 NA MKL1 NA NA Oncogene NA NA NA -ACOT7--MICAL3 BS_27QE6BV7 -0.010910015682345 0.495163545910482 NA NA no change no change NA NA 1:6285380 22:17905054 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr1--chr22]],translocation ACOT7 NA MICAL3 NA NA NA NA NA NA -ACP2--DOCK3 BS_KE56MMY0 2.34035695521915 -3.58686673761623 NA NA differentially expressed differentially expressed NA NA 11:47243239 3:51248775 ARRIBA frameshift 11 1 high [INTERCHROMOSOMAL[chr11--chr3]],translocation/5'-5' ACP2 NA DOCK3 NA NA NA NA NA NA -ACSL1--AC110772.1 BS_E4F1D721 -0.0409804471787128 NA NA NA no change NA NA NA 4:184825916 4:187019821 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr4:2.15Mb]],inversion/5'-5' ACSL1 NA AC110772.1 NA NA NA NA NA NA -ACTL6B--STAG3 BS_84XCR9GG -2.654548131503 -1.30114497927803 NA NA differentially expressed no change NA NA 7:100648783 7:100219997 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr7:0.42Mb]],inversion ACTL6B NA STAG3 NA NA NA NA NA NA -ACVR1--ACVR1 BS_FJZPQZ2C 1.76088512441085 1.76088512441085 NA NA no change no change NA NA 2:157760880 2:157774187 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.14Mb]],duplication/non-canonical_splicing ACVR1 NA ACVR1 NA CosmicCensus, Kinase CosmicCensus, Kinase NA NA NA -AD000671.1--AC011474.1 BS_QWTE1CWR NA NA NA NA NA NA NA NA 19:35745991 19:29379279 ARRIBA frameshift 6 2 medium [INTRACHROMOSOMAL[chr19:6.22Mb]],duplication/5'-5' AD000671.1 NA AC011474.1 NA NA NA NA NA NA -ADAM12--ADAM12 BS_JVA2NQFF 4.9215151310861 4.9215151310861 NA NA differentially expressed differentially expressed NA NA 10:126039294 10:126046132 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr10:0.38Mb]],duplication/non-canonical_splicing ADAM12 NA ADAM12 NA Oncogene Oncogene NA NA NA -ADAM12--ADAM12 BS_MY9D8XZ1 2.53133843875623 2.53133843875623 NA NA differentially expressed differentially expressed NA NA 10:126039294 10:126046132 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr10:0.38Mb]],duplication/non-canonical_splicing ADAM12 NA ADAM12 NA Oncogene Oncogene NA NA NA -ADAM17--YWHAQ BS_VNE0ZPBS 1.45284168450471 -0.419821501529055 NA NA no change no change NA NA 2:9555509 2:9587509 ARRIBA frameshift 4 2 medium [Klijn_CellLines,FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr2:0.03Mb],LOCAL_REARRANGEMENT:-:[28180]],duplication ADAM17 NA YWHAQ NA NA NA NA NA TCGAFusion -ADAM23--SMARCD1(370)/GPD1(2737) BS_PKW05VZV 0.0459179234470402 -0.614655378657711 NA 1.71890705300077 no change no change NA no change 2:206617983 12:50101082 ARRIBA other 2 0 low [],translocation ADAM23 NA SMARCD1 GPD1 Oncogene CosmicCensus NA NA NA -ADAM9--TACC1(23998)/PLEKHA2(24209) BS_8F9BDWY4 0.562315608626043 3.77953893003995 NA 1.29028351619856 no change differentially expressed NA no change 8:39011716 8:38877026 ARRIBA frameshift 2 0 high [],inversion ADAM9 NA TACC1 PLEKHA2 Oncogene Oncogene NA Oncogene NA -ADAMTS12--ADAMTS12 BS_HC5M8JTC 3.59837747230551 3.59837747230551 NA NA differentially expressed differentially expressed NA NA 5:33561027 5:33624351 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.37Mb]],duplication/non-canonical_splicing ADAMTS12 NA ADAMTS12 NA NA NA NA NA NA -ADAMTS14--PRF1(64730)/ADAMTS14(5298) BS_996ZS2A4 -0.429037531889779 6.36731376458341 NA -0.429037531889779 no change differentially expressed NA no change 10:70675178 10:70667505 ARRIBA frameshift 8 0 medium [],duplication ADAMTS14 NA PRF1 ADAMTS14 NA CosmicCensus, Oncogene NA NA NA -ADAMTS16--SNORD81(38231)/RN7SL58P(272885) BS_B1C6GZ84 0.370602384470434 NA NA 20.1912198052262 no change NA NA differentially expressed 5:5200269 5:18274427 ARRIBA frameshift 1 1 high [],deletion ADAMTS16 NA SNORD81 RN7SL58P NA NA NA NA NA -ADAMTS18--ADAMTS18 BS_C51RB0YR 1.46808602362305 1.46808602362305 NA NA no change no change NA NA 16:77293076 16:77335904 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.19Mb]],duplication/non-canonical_splicing ADAMTS18 NA ADAMTS18 NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA -ADAMTS18--ADAMTS18 BS_RHD7XPNP 2.18224872026377 2.18224872026377 NA NA differentially expressed differentially expressed NA NA 16:77297289 16:77335904 ARRIBA frameshift 4 3 low [SELFIE,INTRACHROMOSOMAL[chr16:0.19Mb]],duplication/non-canonical_splicing ADAMTS18 NA ADAMTS18 NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA -ADAMTS2--CLK4 BS_7G42J2SK 4.55980629855511 -0.945588039205328 NA NA differentially expressed no change NA NA 5:179272911 5:178618603 ARRIBA in-frame 221 30 high [INTRACHROMOSOMAL[chr5:0.48Mb]],inversion/5'-5' ADAMTS2 NA CLK4 NA NA Kinase, Kinase NA NA NA -ADAMTS20--ADAMTS20 BS_2A5R9MEJ 29.7834666735677 29.7834666735677 NA NA differentially expressed differentially expressed NA NA 12:43492505 12:43532195 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.20Mb]],duplication/non-canonical_splicing ADAMTS20 NA ADAMTS20 NA NA NA NA NA NA -ADAMTS3--ADAMTS3 BS_6T4JGBGY 6.5764675792528 6.5764675792528 NA NA differentially expressed differentially expressed NA NA 4:72414815 4:72442216 ARRIBA frameshift 13 2 low [SELFIE,INTRACHROMOSOMAL[chr4:0.29Mb]],duplication/non-canonical_splicing ADAMTS3 NA ADAMTS3 NA NA NA NA NA NA -ADAMTS3--ADAMTS3 BS_T1DVKKJB 3.98253966870367 3.98253966870367 NA NA differentially expressed differentially expressed NA NA 4:72414815 4:72442216 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.29Mb]],duplication/non-canonical_splicing ADAMTS3 NA ADAMTS3 NA NA NA NA NA NA -ADAMTS6--ADAMTS6 BS_AD4JPN9Q 3.95987180080456 3.95987180080456 NA NA differentially expressed differentially expressed NA NA 5:65451475 5:65471142 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.33Mb]],duplication/non-canonical_splicing ADAMTS6 NA ADAMTS6 NA NA NA NA NA NA -ADAMTS6--ADAMTS6 BS_FJWZ3M7V 5.17545267875038 5.17545267875038 NA NA differentially expressed differentially expressed NA NA 5:65260600 5:65473952 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.33Mb]],duplication/non-canonical_splicing ADAMTS6 NA ADAMTS6 NA NA NA NA NA NA -ADAMTS6--CENPK BS_3NWQXPQV 4.34367681626844 12.5518779207873 NA NA differentially expressed differentially expressed NA NA 5:65260600 5:65552549 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[35846]],duplication ADAMTS6 NA CENPK NA NA NA NA NA NA -ADAMTS6--CENPK BS_3NWQXPQV 4.34367681626844 12.5518779207873 NA NA differentially expressed differentially expressed NA NA 5:65451475 5:65554946 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[35846]],duplication ADAMTS6 NA CENPK NA NA NA NA NA NA -ADAMTS6--CENPK BS_3NWQXPQV 4.34367681626844 12.5518779207873 NA NA differentially expressed differentially expressed NA NA 5:65451475 5:65554898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[35846]],duplication ADAMTS6 NA CENPK NA NA NA NA NA NA -ADAMTS6--CENPK BS_3NWQXPQV 4.34367681626844 12.5518779207873 NA NA differentially expressed differentially expressed NA NA 5:65451475 5:65552549 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[35846]],duplication ADAMTS6 NA CENPK NA NA NA NA NA NA -ADAMTS6--CENPK BS_3NWQXPQV 4.34367681626844 12.5518779207873 NA NA differentially expressed differentially expressed NA NA 5:65451475 5:65542848 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[35846]],duplication ADAMTS6 NA CENPK NA NA NA NA NA NA -ADAMTS6--CENPK BS_JFB984RG 2.13213664001523 10.0611299610047 NA NA differentially expressed differentially expressed NA NA 5:65260600 5:65554946 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[35846]],duplication ADAMTS6 NA CENPK NA NA NA NA NA NA -ADAMTS9--GEMIN8(101690)/AC002524.1(112799) BS_QXKRN6CR -0.0693398563297132 3.28904903435923 NA NA no change differentially expressed NA NA 3:64686568 X:14131583 ARRIBA frameshift 2 0 high [],translocation ADAMTS9 NA GEMIN8 AC002524.1 TumorSuppressorGene NA NA NA NA -ADAMTS9--GEMIN8(116893)/AC002524.1(97596) BS_QXKRN6CR -0.0693398563297132 3.28904903435923 NA NA no change differentially expressed NA NA 3:64686568 X:14146786 ARRIBA frameshift 3 0 high [],translocation ADAMTS9 NA GEMIN8 AC002524.1 TumorSuppressorGene NA NA NA NA -ADAMTSL1--CHST15(146118)/OAT(157578) BS_P0QF87WC 0.175915693506306 2.09099967781593 NA -2.00895414786256 no change differentially expressed NA differentially expressed 9:18504956 10:124239725 ARRIBA frameshift 2 0 medium [],translocation ADAMTSL1 NA CHST15 OAT NA NA NA NA NA -ADAMTSL1--NAMA BS_BKQZ550R 3.97176551393358 -1.81219711110998 NA NA differentially expressed no change NA NA 9:18662073 9:99359459 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr9:80.44Mb]],deletion/5'-5' ADAMTSL1 NA NAMA NA NA NA NA NA NA -ADAR--IQGAP3 BS_KE56MMY0 2.46976065268886 15.8588652168369 NA NA differentially expressed differentially expressed NA NA 1:154596800 1:156528890 ARRIBA frameshift 12 1 medium [INTRACHROMOSOMAL[chr1:1.90Mb]],duplication ADAR NA IQGAP3 NA NA NA NA NA NA -ADAR--IQGAP3 BS_KE56MMY0 2.46976065268886 15.8588652168369 NA NA differentially expressed differentially expressed NA NA 1:154596805 1:156528610 ARRIBA in-frame 8 1 medium [INTRACHROMOSOMAL[chr1:1.90Mb]],duplication ADAR NA IQGAP3 NA NA NA NA NA NA -ADAR--IQGAP3 BS_KE56MMY0 2.46976065268886 15.8588652168369 NA NA differentially expressed differentially expressed NA NA 1:154596805 1:156528060 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:1.90Mb]],duplication ADAR NA IQGAP3 NA NA NA NA NA NA -ADCK1(44926)/FXNP1(80004)--ADCK1 BS_VNWKNRY4 3.11759097277447 3.11759097277447 NA NA differentially expressed differentially expressed NA NA 14:77979938 14:77859076 ARRIBA other 21 0 medium [],duplication ADCK1 FXNP1 ADCK1 NA Kinase Kinase NA NA NA -ADCK1(86847)/FXNP1(38083)--ADCK1 BS_VNWKNRY4 3.11759097277447 3.11759097277447 NA NA differentially expressed differentially expressed NA NA 14:78021859 14:77859076 ARRIBA other 16 3 high [],duplication ADCK1 FXNP1 ADCK1 NA Kinase Kinase NA NA NA -ADCY1--ADCY1 BS_VNK9XYV9 -0.751973848118956 -0.751973848118956 NA NA no change no change NA NA 7:45662214 7:45622632 ARRIBA frameshift 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.15Mb]],duplication/non-canonical_splicing ADCY1 NA ADCY1 NA NA NA NA NA NA -ADCY2--ADCY2 BS_769BDPDB -1.08730096483351 -1.08730096483351 NA NA no change no change NA NA 5:7804692 5:7784365 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA -ADCY2--ADCY2 BS_AGTPCRR4 1.98141693278535 1.98141693278535 NA NA no change no change NA NA 5:7804692 5:7784365 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA -ADCY2--ADCY2 BS_G63HYD6N -1.48890632611995 -1.48890632611995 NA NA no change no change NA NA 5:7804692 5:7784365 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA -ADCY2--ADCY2 BS_GM9Y3AZ5 -0.321076818425424 -0.321076818425424 NA NA no change no change NA NA 5:7804692 5:7784365 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA -ADCY2--ADCY2 BS_H3FE3TH9 -0.703647107002263 -0.703647107002263 NA NA no change no change NA NA 5:7804692 5:7784365 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA -ADCY2--ADCY2 BS_K2VYFVKZ 0.169950564528272 0.169950564528272 NA NA no change no change NA NA 5:7804692 5:7784365 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA -ADCY2--ADCY2 BS_SAA624A4 -1.68811751906837 -1.68811751906837 NA NA no change no change NA NA 5:7804692 5:7784365 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA -ADCY2--ADCY2 BS_VR7FR1NE 1.37699757376705 1.37699757376705 NA NA no change no change NA NA 5:7804692 5:7784365 ARRIBA frameshift 8 2 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA -ADCY2--ADCY2 BS_WFD0GE5X 2.26116076650764 2.26116076650764 NA NA differentially expressed differentially expressed NA NA 5:7804692 5:7784365 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA -ADCY3--AC016712.1(42420)/ACSL3(91680) BS_Q9V7A95C -0.895171073915644 15.3044533325333 NA 0.806560658638904 no change differentially expressed NA no change 2:24828217 2:222769254 ARRIBA other 20 0 medium [],inversion ADCY3 NA AC016712.1 ACSL3 NA NA NA CosmicCensus, Oncogene NA -ADCY8(34806)/AC087341.1(53156)--WISP1 BS_WMEHNDSK -1.14211261321876 6.34815901749418 NA NA no change differentially expressed NA NA 8:131077232 8:133212864 ARRIBA other 1 1 medium [],deletion ADCY8 AC087341.1 WISP1 NA NA NA NA NA NA -ADCY9--AC093525.2 BS_6JHXXVR7 2.3735428027781 NA NA NA differentially expressed NA NA NA 16:4113750 16:2519218 ARRIBA frameshift 32 2 high [INTRACHROMOSOMAL[chr16:1.43Mb]],inversion ADCY9 NA AC093525.2 NA NA NA NA NA NA -ADCY9--AC093525.2 BS_6JHXXVR7 2.3735428027781 NA NA NA differentially expressed NA NA NA 16:4113750 16:2519541 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr16:1.43Mb]],inversion ADCY9 NA AC093525.2 NA NA NA NA NA NA -ADCY9--AC093525.2 BS_KE56MMY0 3.25143520133999 NA NA NA differentially expressed NA NA NA 16:4113750 16:2519218 ARRIBA frameshift 6 4 medium [INTRACHROMOSOMAL[chr16:1.43Mb]],inversion ADCY9 NA AC093525.2 NA NA NA NA NA NA -ADCY9--AC093525.2 BS_KE56MMY0 3.25143520133999 NA NA NA differentially expressed NA NA NA 16:4113750 16:2519541 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr16:1.43Mb]],inversion ADCY9 NA AC093525.2 NA NA NA NA NA NA -ADCY9--ATP6V0C BS_6JHXXVR7 2.3735428027781 -0.348691462678794 NA NA differentially expressed no change NA NA 16:4113750 16:2519218 ARRIBA in-frame 32 2 high [INTRACHROMOSOMAL[chr16:1.43Mb]],inversion ADCY9 NA ATP6V0C NA NA NA NA NA NA -ADCY9--ATP6V0C BS_6JHXXVR7 2.3735428027781 -0.348691462678794 NA NA differentially expressed no change NA NA 16:4113750 16:2519541 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr16:1.43Mb]],inversion ADCY9 NA ATP6V0C NA NA NA NA NA NA -ADCY9--ATP6V0C BS_KE56MMY0 3.25143520133999 -0.288527436809438 NA NA differentially expressed no change NA NA 16:4113750 16:2519218 ARRIBA in-frame 6 4 medium [INTRACHROMOSOMAL[chr16:1.43Mb]],inversion ADCY9 NA ATP6V0C NA NA NA NA NA NA -ADCY9--ATP6V0C BS_KE56MMY0 3.25143520133999 -0.288527436809438 NA NA differentially expressed no change NA NA 16:4113750 16:2519541 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr16:1.43Mb]],inversion ADCY9 NA ATP6V0C NA NA NA NA NA NA -ADCY9--CA5B BS_EJ9JKM1C 3.95135554054518 1.37181065631959 NA NA differentially expressed no change NA NA 16:4113750 X:15782485 ARRIBA frameshift 32 1 high [INTERCHROMOSOMAL[chr16--chrX]],translocation ADCY9 NA CA5B NA NA NA NA NA NA -ADCY9--CA5B BS_GFM6EA61 2.84112854356969 2.29428786734387 NA NA differentially expressed differentially expressed NA NA 16:4113750 X:15782485 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr16--chrX]],translocation ADCY9 NA CA5B NA NA NA NA NA NA -ADCY9--CA5B BS_YB07VF1X 1.372280825009 3.25796969147655 NA NA no change differentially expressed NA NA 16:4113750 X:15782485 ARRIBA frameshift 10 0 high [INTERCHROMOSOMAL[chr16--chrX]],translocation ADCY9 NA CA5B NA NA NA NA NA NA -ADD2--AL592227.1(210739)/AL589678.1(269300) BS_S6S7SK3P 0.102706349287686 NA NA NA no change NA NA NA 2:70683591 9:11829360 ARRIBA frameshift 2 0 high [],translocation ADD2 NA AL592227.1 AL589678.1 NA NA NA NA NA -ADD2--TMEM17 BS_S6S7SK3P 0.102706349287686 -1.18310034894176 NA NA no change no change NA NA 2:70767886 2:62501262 ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr2:8.10Mb]],inversion/5'-5' ADD2 NA TMEM17 NA NA NA NA NA NA -ADD3--SNRPGP12(10405)/MXI1(57774) BS_Y3G1X98S 2.52945589513286 NA NA -1.23529404102351 differentially expressed NA NA no change 10:109996446 10:110149831 ARRIBA other 4 0 medium [],inversion ADD3 NA SNRPGP12 MXI1 Oncogene NA NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA -ADGB--ADGB BS_0BXY0F9N 3.06086907832407 3.06086907832407 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_34201DKZ 4.86050936625694 4.86050936625694 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 19 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_3F4FQJMR 6.14758884879498 6.14758884879498 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 32 4 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_3X9WMZGJ 4.66349405883381 4.66349405883381 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 15 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_7BTZQKYY 7.01331230528672 7.01331230528672 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 104 9 high [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_8RHPJ740 4.32205119031371 4.32205119031371 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 25 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_8ZP3CBQA 3.42352687101407 3.42352687101407 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 14 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_AG3D3435 4.25297141591111 4.25297141591111 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_AGS1HHGF 4.25297141591111 4.25297141591111 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 12 4 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_AGTPCRR4 3.27078872882967 3.27078872882967 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_B741RZY9 5.8788365879367 5.8788365879367 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 24 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_H0QWRJE2 2.27842307052056 2.27842307052056 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_HC44ZA0V 6.66709119697377 6.66709119697377 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 31 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_J8VX4D17 2.76689019768819 2.76689019768819 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_KK5C8VCK 3.41775296018983 3.41775296018983 NA NA differentially expressed differentially expressed NA NA 6:146802011 6:146782020 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_MKP2Y41Z 3.79816008146695 3.79816008146695 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_P78SMRBS 4.17153445077652 4.17153445077652 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 16 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_QSTAVWGE 5.68698766146166 5.68698766146166 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 68 10 high [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_SDCNP7MW 5.32414508444506 5.32414508444506 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_TBWYAFSM 1.45129527914165 1.45129527914165 NA NA no change no change NA NA 6:146788610 6:146782020 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_W4HGV6E7 6.30871858160445 6.30871858160445 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 56 6 high [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGB--ADGB BS_Z85M2R3N 7.04483760836696 7.04483760836696 NA NA differentially expressed differentially expressed NA NA 6:146788610 6:146782020 ARRIBA in-frame 47 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA -ADGRA3--PTBP2 BS_H1ZS5FMZ 1.64247328112699 1.02481975214024 NA NA no change no change NA NA 4:22420886 1:96806419 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr4--chr1]],translocation ADGRA3 NA PTBP2 NA NA NA NA NA NA -ADGRL3--AL353072.1(971529)/LINC01724(354231) BS_P0QF87WC 0.306559091686557 NA NA NA no change NA NA NA 4:61733554 1:195690765 ARRIBA frameshift 5 0 medium [],translocation ADGRL3 NA AL353072.1 LINC01724 NA NA NA NA NA -ADGRL3--AL353753.1(486117)/AL442639.1(38172) BS_S6S7SK3P 3.22480737344229 NA NA NA differentially expressed NA NA NA 4:62044549 9:26604525 ARRIBA frameshift 8 0 high [],translocation ADGRL3 NA AL353753.1 AL442639.1 NA NA NA NA NA -ADGRL3--NFXL1 BS_MX23ZY0Y 5.48554981402008 3.67651675417061 NA NA differentially expressed differentially expressed NA NA 4:61676935 4:47903323 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr4:13.29Mb]],inversion ADGRL3 NA NFXL1 NA NA TranscriptionFactor NA NA NA -ADGRL3--NFXL1 BS_MX23ZY0Y 5.48554981402008 3.67651675417061 NA NA differentially expressed differentially expressed NA NA 4:61676935 4:47894302 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:13.29Mb]],inversion ADGRL3 NA NFXL1 NA NA TranscriptionFactor NA NA NA -ADGRV1--ADGRV1 BS_02NZT8CE 1.43660729673814 1.43660729673814 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_07ANYSYQ 1.74101863201977 1.74101863201977 NA NA no change no change NA NA 5:90985522 5:90840578 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_1QXEC43H -0.498836488723235 -0.498836488723235 NA NA no change no change NA NA 5:91102340 5:90781430 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_24AHZ9ZW -0.567996042612291 -0.567996042612291 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_27QE6BV7 0.263250357018099 0.263250357018099 NA NA no change no change NA NA 5:91102340 5:90781430 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_2A5R9MEJ 1.05347335364706 1.05347335364706 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_2R9TCR03 0.422098959130864 0.422098959130864 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_2XD3MNKD 0.392614059202925 0.392614059202925 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_399RPKC9 1.35644107888105 1.35644107888105 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_3MS8WVNR 0.878636537614408 0.878636537614408 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_3W07B2TG 0.850481426189397 0.850481426189397 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_49FQXT2E 1.19833392253078 1.19833392253078 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_4C4MZ4NT -0.0522408371424818 -0.0522408371424818 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_4FZS7TX4 0.544224666268923 0.544224666268923 NA NA no change no change NA NA 5:90985522 5:90763305 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_4GTESTSE 1.49533896988834 1.49533896988834 NA NA no change no change NA NA 5:91102340 5:90781430 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_4HQ3T2NC -0.919612686133927 -0.919612686133927 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_5PEFNDCY -0.839735605161965 -0.839735605161965 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_5YJEPPTP -0.821395566662529 -0.821395566662529 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_680K119G 0.773092466037498 0.773092466037498 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_6T4JGBGY 1.64569741282023 1.64569741282023 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 18 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_6WP1FHTE -0.213384882892783 -0.213384882892783 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_7C40TRCY 0.392614059202925 0.392614059202925 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_9BJARSX3 1.63218833097408 1.63218833097408 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_9DFBHHB5 0.314690072799439 0.314690072799439 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_9RT63JD9 1.30407080619957 1.30407080619957 NA NA no change no change NA NA 5:91102340 5:90781430 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_AJ6X83G5 0.281391555352703 0.281391555352703 NA NA no change no change NA NA 5:90985522 5:90763305 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_AMZ70B6F 0.104824064004267 0.104824064004267 NA NA no change no change NA NA 5:91102340 5:90781430 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_AWH9757B 0.0966916040207828 0.0966916040207828 NA NA no change no change NA NA 5:91102340 5:90781430 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_BB0YW800 0.121666363870982 0.121666363870982 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_C05FKR8X 1.73983820767203 1.73983820767203 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_C7N3J4NW 0.641977782161405 0.641977782161405 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_CB6VK7PB 0.405451858893889 0.405451858893889 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_CYEY58NY 2.03232380362008 2.03232380362008 NA NA differentially expressed differentially expressed NA NA 5:91102340 5:90781430 ARRIBA frameshift 23 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_E3BAT4C1 1.17181223426617 1.17181223426617 NA NA no change no change NA NA 5:91102340 5:90781430 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_FJZPQZ2C 0.408344139134662 0.408344139134662 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_FWMJPKCV 0.327418765712904 0.327418765712904 NA NA no change no change NA NA 5:90779097 5:90720048 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_HHPA8NJ2 0.248882906248737 0.248882906248737 NA NA no change no change NA NA 5:91102340 5:90781430 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_JS95PE0J -0.529465432412604 -0.529465432412604 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_K7MVS0Z7 0.827594250178345 0.827594250178345 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_KQ6ZW085 0.672190380709807 0.672190380709807 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_KXH37MPN 1.05964953393852 1.05964953393852 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_MWWZBQ60 0.722022411705003 0.722022411705003 NA NA no change no change NA NA 5:91102340 5:90781430 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_P0QF87WC 0.950618017048278 0.950618017048278 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_P44PE00R 1.33445762359096 1.33445762359096 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_PQ7CQFYR 0.422098959130864 0.422098959130864 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_QB7YGKN1 -0.258325781894266 -0.258325781894266 NA NA no change no change NA NA 5:90985522 5:90763305 ARRIBA frameshift 2 2 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_S2TA8R29 0.718757628113739 0.718757628113739 NA NA no change no change NA NA 5:91102340 5:90781430 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_SBFNFZ8B 0.334343449817505 0.334343449817505 NA NA no change no change NA NA 5:90848821 5:90805284 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_TE0GVDNG 1.21307759887085 1.21307759887085 NA NA no change no change NA NA 5:91102340 5:90781430 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_VW85Q4XJ 0.9187905305529 0.9187905305529 NA NA no change no change NA NA 5:91102340 5:90781430 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_W6AC5J3C 1.81821521224899 1.81821521224899 NA NA no change no change NA NA 5:91102340 5:90781430 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_W7FP2G3F -0.945289595673669 -0.945289595673669 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_WRQHPSXQ 1.10200051054934 1.10200051054934 NA NA no change no change NA NA 5:90848821 5:90805284 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_X59HSFGG -0.24747698982849 -0.24747698982849 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_YB2RXRHT 0.64242297944327 0.64242297944327 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_Z8YZ6QGS 1.41839997385311 1.41839997385311 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADGRV1--ADGRV1 BS_ZWR9W4FX 0.131150680880526 0.131150680880526 NA NA no change no change NA NA 5:90985522 5:90965415 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA -ADIPOR2--ERC1 BS_VXHWZJDC 1.89253186574967 5.26137251727071 NA NA no change differentially expressed NA NA 12:1772961 12:1371833 ARRIBA frameshift 1 0 low [ChimerSeq,INTRACHROMOSOMAL[chr12:0.19Mb]],duplication ADIPOR2 NA ERC1 NA NA CosmicCensus, Oncogene NA NA TCGAFusion -ADIPOR2--NUDT4 BS_2EN3X6HB -0.127992216285308 2.7811587338462 NA NA no change differentially expressed NA NA 12:1770326 12:93379417 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr12:91.59Mb]],deletion ADIPOR2 NA NUDT4 NA NA NA NA NA NA -ADNP2--EXOC6 BS_TXZ7KHTQ 1.59077018118278 -0.639243804483322 NA NA no change no change NA NA 18:80135827 10:93056924 ARRIBA in-frame 1 1 high [INTERCHROMOSOMAL[chr18--chr10]],translocation ADNP2 NA EXOC6 NA TranscriptionFactor NA NA NA NA -ADSS--AC099063.4 BS_KND4B5CW 1.06126104703211 NA NA NA no change NA NA NA 1:244432545 1:89205784 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:155.20Mb]],inversion ADSS NA AC099063.4 NA NA NA NA NA NA -AES--MIA BS_AZN38B7V -1.31027844425873 3.11374905811767 NA NA no change differentially expressed NA NA 19:3057679 19:40775644 ARRIBA frameshift 24 1 high [INTRACHROMOSOMAL[chr19:37.71Mb]],duplication/5'-5' AES NA MIA NA NA TumorSuppressorGene NA NA NA -AES--MIA-RAB4B BS_AZN38B7V -1.31027844425873 -0.596030015329127 NA NA no change no change NA NA 19:3057679 19:40775644 ARRIBA frameshift 17 0 high [INTRACHROMOSOMAL[chr19:37.71Mb]],duplication/5'-5' AES NA MIA-RAB4B NA NA NA NA NA NA -AES--SNRPA(5793)/MIA(466)/MIA-RAB4B(466) BS_AZN38B7V -1.31027844425873 -0.237346645127505 NA 3.11374905811767 no change no change NA differentially expressed 19:3057679 19:40771182 ARRIBA frameshift 11 0 medium [],duplication AES NA SNRPA MIA NA NA NA TumorSuppressorGene NA -AF117829.1--AC090578.1(85152)/RPSAP74(349341) BS_HQ5BJ6MW NA NA NA NA NA NA NA NA 8:89757045 8:88894060 ARRIBA other 2 0 medium [],deletion AF117829.1 NA AC090578.1 RPSAP74 NA NA NA NA NA -AF127577.4--NRIP1 BS_3Y0QXZQB NA 2.15581885782055 NA NA NA differentially expressed NA NA 21:14825522 21:15043573 ARRIBA other 1 1 medium [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA -AF127577.4--NRIP1 BS_3Y0QXZQB NA 2.15581885782055 NA NA NA differentially expressed NA NA 21:15014344 21:15043574 ARRIBA other 1 1 medium [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA -AF127577.4--NRIP1 BS_4NWHYH53 NA 5.572283044873 NA NA NA differentially expressed NA NA 21:14825522 21:15043573 ARRIBA other 2 3 high [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA -AF127577.4--NRIP1 BS_4NWHYH53 NA 5.572283044873 NA NA NA differentially expressed NA NA 21:15014344 21:15043574 ARRIBA other 1 0 low [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA -AF127577.4--NRIP1 BS_74G5K7JF NA 5.03355831915597 NA NA NA differentially expressed NA NA 21:14825522 21:15043573 ARRIBA other 1 1 medium [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA -AF127577.4--NRIP1 BS_74G5K7JF NA 5.03355831915597 NA NA NA differentially expressed NA NA 21:15014344 21:15043574 ARRIBA other 2 0 low [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA -AF127577.4--NRIP1 BS_8T7DZV2F NA 5.53698420857539 NA NA NA differentially expressed NA NA 21:15014344 21:15043574 ARRIBA other 4 0 low [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA -AF127577.4--NRIP1 BS_8T7DZV2F NA 5.53698420857539 NA NA NA differentially expressed NA NA 21:14825522 21:15043573 ARRIBA other 1 0 low [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA -AF127577.4--NRIP1 BS_F8N6CFQE NA 4.7024195584495 NA NA NA differentially expressed NA NA 21:14825522 21:15043573 ARRIBA other 1 2 medium [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA -AF127577.4--NRIP1 BS_F8N6CFQE NA 4.7024195584495 NA NA NA differentially expressed NA NA 21:15014344 21:15043574 ARRIBA other 2 0 low [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA -AF127577.4--NRIP1 BS_QXKRN6CR NA 5.57156796044532 NA NA NA differentially expressed NA NA 21:14825522 21:15043573 ARRIBA other 1 1 medium [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA -AF127577.4--NRIP1 BS_RXN5T5YT NA 1.14669418175333 NA NA NA no change NA NA 21:14825522 21:15043573 ARRIBA other 1 0 low [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA -AF127577.4--NRIP1 BS_RXN5T5YT NA 1.14669418175333 NA NA NA no change NA NA 21:15014344 21:15043574 ARRIBA other 1 0 low [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA -AF127577.4--TTC9C BS_HZ707C55 NA -0.559388003276256 NA NA NA no change NA NA 21:15006624 11:62728163 ARRIBA other 2 0 low [],translocation/5'-5' AF127577.4 NA TTC9C NA NA NA NA NA NA -AF130359.1--TTC3 BS_1EN5V3XW NA 3.25078366489797 NA NA NA differentially expressed NA NA 21:16815030 21:37159699 ARRIBA other 18 2 high [INTRACHROMOSOMAL[chr21:20.26Mb]],inversion AF130359.1 NA TTC3 NA NA NA NA NA NA -AF130359.1--TTC3 BS_1EN5V3XW NA 3.25078366489797 NA NA NA differentially expressed NA NA 21:16755680 21:37159699 ARRIBA other 1 3 high [INTRACHROMOSOMAL[chr21:20.26Mb]],inversion AF130359.1 NA TTC3 NA NA NA NA NA NA -AF130359.1--TTC3 BS_1EN5V3XW NA 3.25078366489797 NA NA NA differentially expressed NA NA 21:16815622 21:37159699 ARRIBA other 14 0 medium [INTRACHROMOSOMAL[chr21:20.26Mb]],inversion AF130359.1 NA TTC3 NA NA NA NA NA NA -AF254983.1--AF254983.1 BS_MKM0EEN1 NA NA NA NA NA NA NA NA 21:10570549 21:10567670 ARRIBA other 10 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.12Mb]],duplication/non-canonical_splicing AF254983.1 NA AF254983.1 NA NA NA NA NA NA -AFAP1--NTRK2 BS_JFR750KD 6.59770602044061 0.686225995013765 NA NA differentially expressed no change NA NA 4:7778762 9:84741892 ARRIBA in-frame 121 28 high [ChimerSeq,INTERCHROMOSOMAL[chr4--chr9]],translocation AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion -AFAP1--NTRK2 BS_JFR750KD 6.59770602044061 0.686225995013765 NA NA differentially expressed no change NA NA 4:7778762 9:84744973 ARRIBA in-frame 7 11 medium [ChimerSeq,INTERCHROMOSOMAL[chr4--chr9]],translocation AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion -AFAP1--NTRK2 BS_S458NMKH 5.57429126570269 0.841861413534496 NA NA differentially expressed no change NA NA 4:7778762 9:84741892 ARRIBA in-frame 90 12 high [ChimerSeq,INTERCHROMOSOMAL[chr4--chr9]],translocation AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion -AFAP1--NTRK2 BS_S458NMKH 5.57429126570269 0.841861413534496 NA NA differentially expressed no change NA NA 4:7778762 9:84744973 ARRIBA in-frame 2 5 medium [ChimerSeq,INTERCHROMOSOMAL[chr4--chr9]],translocation AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion -AFAP1--NTRK2 BS_S458NMKH 5.57429126570269 0.841861413534496 NA NA differentially expressed no change NA NA 4:7778762 9:84751986 ARRIBA frameshift 1 2 medium [ChimerSeq,INTERCHROMOSOMAL[chr4--chr9]],translocation AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion -AFDN--AFDN BS_7G42J2SK NA NA NA NA NA NA NA NA 6:167962567 6:167914168 ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.15Mb]],duplication/non-canonical_splicing AFDN NA AFDN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -AFDN--AFDN BS_CXVJK2FY NA NA NA NA NA NA NA NA 6:167962567 6:167914168 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.15Mb]],duplication/non-canonical_splicing AFDN NA AFDN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -AFDN--AFDN BS_G63HYD6N NA NA NA NA NA NA NA NA 6:167962567 6:167914168 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.15Mb]],duplication/non-canonical_splicing AFDN NA AFDN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -AFDN--AFDN BS_NGHK9RZP NA NA NA NA NA NA NA NA 6:167907289 6:167896878 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.15Mb]],duplication/non-canonical_splicing AFDN NA AFDN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -AFDN--SMTN BS_1HQ76V6D NA 0.634174849809215 NA NA NA no change NA NA 6:167827237 22:31095303 ARRIBA in-frame 33 4 high [INTERCHROMOSOMAL[chr6--chr22]],translocation AFDN NA SMTN NA CosmicCensus, Oncogene NA NA NA NA -AFDN--SMTN BS_1HQ76V6D NA 0.634174849809215 NA NA NA no change NA NA 6:167827932 22:31095303 ARRIBA other 1 4 high [INTERCHROMOSOMAL[chr6--chr22]],translocation AFDN NA SMTN NA CosmicCensus, Oncogene NA NA NA NA -AFF2--SND1 BS_JT82QGXF 3.87895247917512 1.69059254610637 NA NA differentially expressed no change NA NA X:148662768 7:127844324 ARRIBA in-frame 10 1 high [INTERCHROMOSOMAL[chrX--chr7]],translocation AFF2 NA SND1 NA NA CosmicCensus NA NA NA -AFF3--TMEM182 BS_PNYN0AYD 4.38275029496636 2.0560743008593 NA NA differentially expressed differentially expressed NA NA 2:99554311 2:102841437 ARRIBA frameshift 3 0 medium [ChimerSeq,INTRACHROMOSOMAL[chr2:2.59Mb]],inversion AFF3 NA TMEM182 NA CosmicCensus, Oncogene NA NA NA TCGAFusion -AFF3--TMEM182 BS_PNYN0AYD 4.38275029496636 2.0560743008593 NA NA differentially expressed differentially expressed NA NA 2:99554311 2:102843412 ARRIBA frameshift 2 0 low [ChimerSeq,INTRACHROMOSOMAL[chr2:2.59Mb]],inversion AFF3 NA TMEM182 NA CosmicCensus, Oncogene NA NA NA TCGAFusion -AFG1L--AFG1L BS_TG93XC55 NA NA NA NA NA NA NA NA 6:108447296 6:108355654 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.23Mb]],duplication/non-canonical_splicing AFG1L NA AFG1L NA NA NA NA NA NA -AGAP2--AC080011.1(109755)/AC087883.1(10168) BS_H1ZS5FMZ 1.93023831171293 NA NA NA no change NA NA NA 12:57729639 12:60205826 ARRIBA frameshift 215 28 high [],duplication AGAP2 NA AC080011.1 AC087883.1 Oncogene NA NA NA NA -AGAP2--OS9 BS_7327SDAQ 1.41794052762207 6.07257726131102 NA NA no change differentially expressed NA NA 12:57729639 12:57715760 ARRIBA frameshift 26 5 medium [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:-:+:[2204]],inversion AGAP2 NA OS9 NA Oncogene NA NA NA NA -AGFG1--ASXL2 BS_RRAEQZ97 0.909756460567779 7.13284054132409 NA NA no change differentially expressed NA NA 2:227523925 2:25806337 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:201.59Mb]],inversion AGFG1 NA ASXL2 NA NA CosmicCensus NA NA NA -AGGF1--BHMT BS_JTMXAMB7 1.03052272581989 17.4030458876456 NA NA no change differentially expressed NA NA 5:77043643 5:79130935 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr5:2.05Mb]],inversion/3'-3' AGGF1 NA BHMT NA NA NA NA NA NA -AGGF1--BHMT BS_M84H3KXA 1.99019666594929 20.3356601914243 NA NA no change differentially expressed NA NA 5:77043643 5:79130935 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr5:2.05Mb]],inversion/3'-3' AGGF1 NA BHMT NA NA NA NA NA NA -AGK--ACTR3B(202863)/AC079809.1(86072) BS_QWTE1CWR -0.180198159192797 -2.014693302455 NA NA no change differentially expressed NA NA 7:141596641 7:153058241 ARRIBA frameshift 1 1 high [],deletion AGK NA ACTR3B AC079809.1 NA NA NA NA NA -AGO1--FOXP4-AS1 BS_RCCN63K6 3.53122892696061 -0.947840071828243 NA NA differentially expressed no change NA NA 1:35902337 6:41508207 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr1--chr6]],translocation/5'-5' AGO1 NA FOXP4-AS1 NA NA NA NA NA NA -AGO1--LINC01276 BS_RCCN63K6 3.53122892696061 26.0146353464418 NA NA differentially expressed differentially expressed NA NA 1:35902337 6:41508207 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr1--chr6]],translocation AGO1 NA LINC01276 NA NA NA NA NA NA -AGO1--LINC01276 BS_RCCN63K6 3.53122892696061 26.0146353464418 NA NA differentially expressed differentially expressed NA NA 1:35902337 6:41519376 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr1--chr6]],translocation AGO1 NA LINC01276 NA NA NA NA NA NA -AGO2--MACROD2 BS_HE57E1RP 6.30954465887999 2.76338338506937 NA NA differentially expressed differentially expressed NA NA 8:140560374 20:15802608 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr8--chr20]],translocation AGO2 NA MACROD2 NA NA NA NA NA NA -AGO2--MACROD2 BS_HE57E1RP 6.30954465887999 2.76338338506937 NA NA differentially expressed differentially expressed NA NA 8:140560374 20:15862745 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr8--chr20]],translocation AGO2 NA MACROD2 NA NA NA NA NA NA -AGO2--NRBP2 BS_HZRM07TW 4.94917806260729 -2.52575072534744 NA NA differentially expressed differentially expressed NA NA 8:140572812 8:143840229 ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr8:3.20Mb]],duplication AGO2 NA NRBP2 NA NA Kinase, Kinase NA NA NA -AGPAT3--CD44 BS_T1DVKKJB 3.23047148581931 4.34435898188052 NA NA differentially expressed differentially expressed NA NA 21:43982475 11:35167805 ARRIBA frameshift 1 2 medium [INTERCHROMOSOMAL[chr21--chr11]],translocation AGPAT3 NA CD44 NA NA TumorSuppressorGene, Oncogene NA NA NA -AGTR1--AC068633.1(126104)/IGSF11(216785) BS_FAQQ0GCQ -0.59326755021025 NA NA 0.398668003404166 no change NA NA no change 3:148698127 3:118683772 ARRIBA other 2 0 medium [],inversion AGTR1 NA AC068633.1 IGSF11 TumorSuppressorGene NA NA NA NA -AHCYL2--ZNF746 BS_593HEWBF 5.50084022548655 1.36782824027968 NA NA differentially expressed no change NA NA 7:129225439 7:149494503 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:20.04Mb]],inversion AHCYL2 NA ZNF746 NA NA TranscriptionFactor NA NA NA -AHNAK--AC116535.2 BS_3W07B2TG 5.02125786855031 NA NA NA differentially expressed NA NA NA 11:62532602 11:10786294 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr11:51.63Mb]],deletion/5'-5' AHNAK NA AC116535.2 NA TumorSuppressorGene NA NA NA NA -AICDA(12270)/AC092184.1(6404)--STON2 BS_WSQMAA33 28.5692149085101 2.19359237022956 NA NA differentially expressed differentially expressed NA NA 12:8625141 14:81278739 ARRIBA other 4 0 medium [],translocation AICDA AC092184.1 STON2 NA NA NA NA NA NA -AIFM3--IGFL1(4661)/AC006262.4(13490) BS_JGPR9SR2 -2.90486195459967 -0.520846717783737 NA -0.29583656105915 differentially expressed no change NA no change 22:20974816 19:46235904 ARRIBA frameshift 4 0 high [],translocation AIFM3 NA IGFL1 AC006262.4 NA NA NA NA NA -AIP--RCN1 BS_XF0ZX2B3 -1.48094025469059 1.59730528852723 NA NA no change no change NA NA 11:67490590 11:32008602 ARRIBA other 9 1 medium [INTRACHROMOSOMAL[chr11:35.38Mb]],duplication AIP NA RCN1 NA TumorSuppressorGene NA NA NA NA -AJ009632.2--AJ009632.2 BS_4W1DBAN4 NA NA NA NA NA NA NA NA 21:15511119 21:15513934 ARRIBA other 2 1 low [SELFIE,INTRACHROMOSOMAL[chr21:0.26Mb]],duplication/non-canonical_splicing AJ009632.2 NA AJ009632.2 NA NA NA NA NA NA -AJ009632.2--AJ009632.2 BS_AMQGM1V9 NA NA NA NA NA NA NA NA 21:15511119 21:15513934 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.26Mb]],duplication/non-canonical_splicing AJ009632.2 NA AJ009632.2 NA NA NA NA NA NA -AJ009632.2--AJ009632.2 BS_DVCQ8XDZ NA NA NA NA NA NA NA NA 21:15511119 21:15513934 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.26Mb]],duplication/non-canonical_splicing AJ009632.2 NA AJ009632.2 NA NA NA NA NA NA -AJ009632.2--AJ009632.2 BS_P44PE00R NA NA NA NA NA NA NA NA 21:15511119 21:15513934 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.26Mb]],duplication/non-canonical_splicing AJ009632.2 NA AJ009632.2 NA NA NA NA NA NA -AK3--DMRT1 BS_MKM0EEN1 0.334928802409354 21.3980796004468 NA NA no change differentially expressed NA NA 9:4718419 9:893912 ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr9:3.74Mb]],inversion AK3 NA DMRT1 NA NA TranscriptionFactor NA NA NA -AK4--SLC22A2(53300)/SLC22A3(17330) BS_1021ZGQT 5.00523713642893 3.68633750435364 NA -1.37297741870438 differentially expressed differentially expressed NA no change 1:65148552 6:160330938 ARRIBA frameshift 25 1 high [],translocation AK4 NA SLC22A2 SLC22A3 NA NA NA NA NA -AK4--SLC22A3 BS_1021ZGQT 5.00523713642893 -1.37297741870438 NA NA differentially expressed no change NA NA 1:65190352 6:160362552 ARRIBA other 14 1 medium [INTERCHROMOSOMAL[chr1--chr6]],translocation/5'-5' AK4 NA SLC22A3 NA NA NA NA NA NA -AK6P1(272184)/ZNF970P(3053445)--SNRPCP16 BS_NDN62H0S NA 9.85946279963509 -0.086713193922977 NA NA differentially expressed no change NA 12:34522142 4:9052052 ARRIBA other 4 0 medium [],translocation AK6P1 ZNF970P SNRPCP16 NA NA NA NA NA NA -AKAP13--THADA BS_FCAKKZ20 1.57084471540474 1.4006058455854 NA NA no change no change NA NA 15:85585823 2:43578607 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr15--chr2]],translocation AKAP13 NA THADA NA Oncogene Oncogene NA NA NA -AKAP13--TMBIM6 BS_6WP1FHTE 3.86115291231542 2.06056419179142 NA NA differentially expressed differentially expressed NA NA 15:85741495 12:49752464 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr15--chr12]],translocation AKAP13 NA TMBIM6 NA Oncogene NA NA NA NA -AKAP8L--RAB1B BS_W80TJC27 -1.73481795470197 -1.35889707065891 NA NA no change no change NA NA 19:15410520 11:66275804 ARRIBA frameshift 21 1 high [INTERCHROMOSOMAL[chr19--chr11]],translocation AKAP8L NA RAB1B NA TranscriptionFactor NA NA NA NA -AKR1C6P--AKR1E2 BS_03FT4S8B -0.26611577991179 3.887873285943 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_06AMMCXR -0.26611577991179 4.88146194083169 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_1021ZGQT -0.26611577991179 6.89907635446469 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_13CGKADW 0.172816666311929 5.93098612633038 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_196BBNEJ -0.26611577991179 4.19908565648964 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_1BWP5MCT -0.26611577991179 10.4994244983005 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_1RT76ANT -0.26611577991179 7.85623365077948 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_273HKCT4 -0.26611577991179 6.07365308317915 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_2KJ2YAZR -0.26611577991179 6.02229824164871 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_2SFTWNVE -0.26611577991179 5.75630556060432 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_34201DKZ -0.26611577991179 6.18709359481936 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_3KASVCSQ -0.26611577991179 6.89376436703329 NA NA no change differentially expressed NA NA 10:4929717 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_3NWQXPQV -0.26611577991179 10.0889801452127 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_3T6X4BPC -0.26611577991179 6.71483943425729 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_4A45GGSW -0.26611577991179 6.55147858113845 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_4CP4T22V -0.26611577991179 10.8688437219569 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_4FZS7TX4 -0.26611577991179 7.78274311295758 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_4PH1MBGR -0.26611577991179 8.39682420290374 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_4W1DBAN4 -0.26611577991179 5.64532376623782 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_52DAPP1Y -0.26611577991179 8.05335580898535 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_5PEFNDCY 0.172816666311929 4.28553195600524 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_5PJCHF6V -0.26611577991179 9.7028992138944 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_5PV5N4HQ -0.26611577991179 5.85791220188834 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_5VQP0E6K -0.26611577991179 7.12173153987435 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_61E80SD6 -0.26611577991179 10.780421298966 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_68BW2163 -0.26611577991179 8.30079264721874 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_7P83Z28P -0.26611577991179 7.46675495355071 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_7T1J3KET -0.26611577991179 7.94538285247579 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_7Z93ZYMS -0.26611577991179 5.58166689782247 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_7ZV3DPGT -0.26611577991179 7.02471059073313 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_8S86CM61 -0.26611577991179 9.03674357790286 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_92VDQ0NE -0.26611577991179 5.0369708029091 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_9GJ23RHH 3.12881636337967 6.30985910644048 NA NA differentially expressed differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_9M5XJ10G -0.26611577991179 9.81506178830859 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_9NJHQE9F -0.26611577991179 5.60298649810978 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_9Q6Z6VJC -0.26611577991179 5.70115826909068 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_9V633J1X -0.26611577991179 6.85104022093307 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_A14Z8BBK -0.26611577991179 8.38921696699562 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_AD4JPN9Q -0.26611577991179 6.32798722640907 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_AHEFXG7W -0.26611577991179 8.91315433967337 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_AMQGM1V9 -0.26611577991179 5.69421688757292 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_CREQ97QC -0.26611577991179 3.89825720918513 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_D144EJRQ -0.26611577991179 7.17695607044508 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_DRD9QXR5 -0.26611577991179 1.69163709124552 NA NA no change no change NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_DV86M0Y7 -0.26611577991179 4.8647741715471 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_E4GC9EXR 0.607424584628078 5.34020144138995 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_EFE4YEK3 -0.26611577991179 5.52431365556906 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_EHVYJAVA -0.26611577991179 4.7203612263937 NA NA no change differentially expressed NA NA 10:4929717 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_ENKG5GF3 -0.26611577991179 5.86460475111406 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_F6Z5HFWH -0.26611577991179 7.86051931430428 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 7 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_FEV5A0HN -0.26611577991179 7.90315199439047 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_FJWZ3M7V -0.26611577991179 4.01091976077936 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_G00FHF3Q -0.26611577991179 8.21454804299346 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_GE2RVZE6 -0.26611577991179 8.30855136928484 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_HCP5C912 -0.26611577991179 6.2977328179197 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_HD4EJYE3 -0.26611577991179 5.64532376623782 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_J8G4SH4Z -0.26611577991179 7.84335201026271 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_JCPKYHKY 0.172816666311929 3.90861712333477 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_JFB984RG -0.26611577991179 11.0173875201548 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_JXF8A2A6 -0.26611577991179 9.41561655801296 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_JXNZYGCR -0.26611577991179 5.05303053649478 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_K5802F84 -0.26611577991179 3.97027856719457 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_KEA474HN -0.26611577991179 6.14331847187294 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_KYF0Q0E7 -0.26611577991179 10.8248506255522 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_M4NVX721 -0.26611577991179 2.42576563575886 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_MVW01FPB -0.26611577991179 6.57436834163947 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_N8J1DP02 -0.26611577991179 10.2072373824013 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 1 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_NDN62H0S -0.26611577991179 6.54573782330819 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_NKRYMHEP -0.26611577991179 11.1302986218726 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_NQB91P48 -0.26611577991179 7.77401738308486 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_NRFQEQKP -0.26611577991179 7.67243077439762 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_NS7GSHB9 -0.26611577991179 7.2265762993042 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_PEP9NZXN -0.26611577991179 3.73991349265626 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_QEYPFYHD -0.26611577991179 9.54099966040436 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 7 1 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_QNAQGAV6 -0.26611577991179 2.75884729954158 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_QPPPGYP4 -0.26611577991179 7.90739303670766 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_QWNBZ9RJ -0.26611577991179 9.10540152714707 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_R13X6TMW -0.26611577991179 7.40079240344867 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_R6WNEEE4 -0.26611577991179 8.6838611994071 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_RHD7XPNP -0.26611577991179 3.77203306298581 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_S1KK7XRH -0.26611577991179 11.4046083172338 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 7 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_S1M423AB -0.26611577991179 10.780421298966 NA NA no change differentially expressed NA NA 10:4929717 10:4830675 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_SFKZSJN1 -0.26611577991179 4.21844059316703 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_T1YHK6B7 -0.26611577991179 10.8226395912741 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_T2QPMZCM 0.607424584628078 6.74241281895772 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_TAHV8N04 -0.26611577991179 6.44700248034324 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_TG93XC55 -0.26611577991179 5.13247695956969 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_V96WVE3Z 0.607424584628078 7.34827473283654 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_VJVDJABP -0.26611577991179 5.60298649810978 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_VMEX27TN -0.26611577991179 7.01954556321757 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_VPMKHW9X -0.26611577991179 5.48809146255692 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_VTJ9ESSV -0.26611577991179 7.17196369012516 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_VVFBW0YH -0.26611577991179 9.79006888318363 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_VXEFKW5P -0.26611577991179 3.51968927457833 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_W311713R 1.03779235809684 11.4701613236936 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_WCRKYV0T -0.26611577991179 4.6769856613851 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_XJTW0P8P -0.26611577991179 5.69421688757292 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_XQ5SFW35 -0.26611577991179 12.1556601017048 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_Y8D1F5WW -0.26611577991179 10.1766873035492 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_YB2RXRHT -0.26611577991179 3.3588277624137 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_YMAJC22S -0.26611577991179 3.40538050193868 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_Z0AVVB1V -0.26611577991179 7.2265762993042 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_Z45HD492 -0.26611577991179 7.09640269416817 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_Z6BWR941 -0.26611577991179 7.10655142075745 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_Z7PKVY9J -0.26611577991179 9.25221694066033 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_Z85M2R3N -0.26611577991179 1.03475664050198 NA NA no change no change NA NA 10:4889923 10:4830675 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_ZH1FBX50 -0.26611577991179 5.06103886905308 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_ZR96A4FH -0.26611577991179 7.73013200901274 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_ZTWGFWTX -0.26611577991179 7.15193835679858 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P--AKR1E2 BS_ZXYDSBM9 -0.26611577991179 9.75091179737726 NA NA no change differentially expressed NA NA 10:4889923 10:4830675 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA -AKR1C6P(17631)/U8(52830)--AKR1E2 BS_XQ5SFW35 -0.26611577991179 12.1556601017048 -0.16515650414899 NA no change differentially expressed no change NA 10:4909606 10:4842421 ARRIBA other 1 0 low [],duplication AKR1C6P U8 AKR1E2 NA NA NA NA NA NA -AKR1C6P(19097)/U8(51364)--AKR1E2 BS_2KJ2YAZR -0.26611577991179 6.02229824164871 -0.16515650414899 NA no change differentially expressed no change NA 10:4911072 10:4830675 ARRIBA other 1 0 low [],duplication AKR1C6P U8 AKR1E2 NA NA NA NA NA NA -AKR1C6P(37742)/U8(32719)--AKR1E2 BS_Y8D1F5WW -0.26611577991179 10.1766873035492 -0.16515650414899 NA no change differentially expressed no change NA 10:4929717 10:4830675 ARRIBA other 1 0 low [],duplication AKR1C6P U8 AKR1E2 NA NA NA NA NA NA -AKR1C6P(57886)/U8(12575)--AKR1E2 BS_NKRYMHEP -0.26611577991179 11.1302986218726 -0.16515650414899 NA no change differentially expressed no change NA 10:4949861 10:4830675 ARRIBA other 1 0 low [],duplication AKR1C6P U8 AKR1E2 NA NA NA NA NA NA -AKR1C6P(57886)/U8(12575)--AKR1E2 BS_QEYPFYHD -0.26611577991179 9.54099966040436 -0.16515650414899 NA no change differentially expressed no change NA 10:4949861 10:4830675 ARRIBA other 1 4 medium [],duplication AKR1C6P U8 AKR1E2 NA NA NA NA NA NA -AKR1C6P(57886)/U8(12575)--AKR1E2 BS_QWNBZ9RJ -0.26611577991179 9.10540152714707 -0.16515650414899 NA no change differentially expressed no change NA 10:4949861 10:4830675 ARRIBA other 1 1 low [],duplication AKR1C6P U8 AKR1E2 NA NA NA NA NA NA -AKR1C6P(69308)/U8(1153)--AKR1E2 BS_4A45GGSW -0.26611577991179 6.55147858113845 -0.16515650414899 NA no change differentially expressed no change NA 10:4961283 10:4830675 ARRIBA other 1 0 low [],duplication AKR1C6P U8 AKR1E2 NA NA NA NA NA NA -AL008723.1--SLC5A4-AS1 BS_03FT4S8B 1.83896002352938 NA NA NA no change NA NA NA 22:32276805 22:32268289 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]],duplication AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA -AL008723.1--SLC5A4-AS1 BS_FWMJPKCV 1.35096541805234 NA NA NA no change NA NA NA 22:32273507 22:32269357 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]],duplication AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA -AL008723.1--SLC5A4-AS1 BS_FWMJPKCV 1.35096541805234 NA NA NA no change NA NA NA 22:32273507 22:32265431 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]],duplication AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA -AL008723.1--SLC5A4-AS1 BS_QEYPFYHD 0.570354732430626 NA NA NA no change NA NA NA 22:32273507 22:32265431 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]],duplication AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA -AL008723.1--SLC5A4-AS1 BS_QWNBZ9RJ 1.01164876868538 NA NA NA no change NA NA NA 22:32273507 22:32246174 ARRIBA other 1 2 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]],duplication AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA -AL008723.1--SLC5A4-AS1 BS_QWNBZ9RJ 1.01164876868538 NA NA NA no change NA NA NA 22:32273507 22:32269357 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]],duplication AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA -AL009178.2(23665)/AFDN-AS1(1963)--SMTN BS_1HQ76V6D NA 0.634174849809215 NA NA NA no change NA NA 6:167821913 22:31095303 ARRIBA other 1 1 high [],translocation AL009178.2 AFDN-AS1 SMTN NA NA NA NA NA NA -AL021408.1(7637)/MIR548AJ1(8276)--AL021408.1 BS_JKXA3FQC NA NA NA NA NA NA NA NA 6:132106916 6:132009857 ARRIBA other 2 1 medium [],duplication AL021408.1 MIR548AJ1 AL021408.1 NA NA NA NA NA NA -AL022068.1--MIR548A1HG(414070)/AL589647.1(55624) BS_5NWDARXG NA NA NA NA NA NA NA NA 6:19534887 6:19088071 ARRIBA other 2 0 high [],deletion AL022068.1 NA MIR548A1HG AL589647.1 NA NA NA NA NA -AL022100.1(2906)/AL023755.1(21047)--AL022100.1 BS_VA5T4KAA NA NA NA NA NA NA NA NA 1:168379782 1:168367491 ARRIBA other 2 1 medium [],duplication AL022100.1 AL023755.1 AL022100.1 NA NA NA NA NA NA -AL024497.2--TARID BS_3PYESPHA NA 3.61079370407375 NA NA NA differentially expressed NA NA 6:133456534 6:133507321 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr6:0.05Mb],LOCAL_REARRANGEMENT:-:[45647]],duplication AL024497.2 NA TARID NA NA NA NA NA NA -AL024497.2--TARID BS_4W68NV3M NA 5.0907024458149 NA NA NA differentially expressed NA NA 6:133456534 6:133507321 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr6:0.05Mb],LOCAL_REARRANGEMENT:-:[45647]],duplication AL024497.2 NA TARID NA NA NA NA NA NA -AL024497.2--TARID BS_ERWT0ZWE NA 4.7970623904554 NA NA NA differentially expressed NA NA 6:133456534 6:133507321 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr6:0.05Mb],LOCAL_REARRANGEMENT:-:[45647]],duplication AL024497.2 NA TARID NA NA NA NA NA NA -AL024498.2--DST BS_NJ4WPQVK NA 0.393346064324939 NA NA NA no change NA NA 6:10755232 6:56792187 ARRIBA other 2 0 low [],deletion/5'-5' AL024498.2 NA DST NA NA Oncogene NA NA NA -AL031686.1--AL031686.1(221)/ZNF334(2678) BS_9V633J1X NA NA NA 2.63298783125202 NA NA NA differentially expressed 20:46474501 20:46496952 ARRIBA other 3 2 medium [],duplication AL031686.1 NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA -AL031686.1--AL031686.1(221)/ZNF334(2678) BS_G63HYD6N NA NA NA 1.06612476521267 NA NA NA no change 20:46474501 20:46496952 ARRIBA other 3 2 high [],duplication AL031686.1 NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA -AL031686.1--ZNF334 BS_044XZ8ST NA -0.565027832751074 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_044XZ8ST NA -0.565027832751074 NA NA NA no change NA NA 20:46485529 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_258RRGDM NA -0.103902394349837 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_2ADZNNV4 NA -1.06589508537856 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 2 2 high [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_3F4FQJMR NA 0.380221069119428 NA NA NA no change NA NA 20:46492682 20:46512140 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_3W07B2TG NA -0.296998300689306 NA NA NA no change NA NA 20:46485529 20:46504740 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_49BQS7Z6 NA -0.743998755705876 NA NA NA no change NA NA 20:46474501 20:46506458 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_49BQS7Z6 NA -0.743998755705876 NA NA NA no change NA NA 20:46457675 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_49BQS7Z6 NA -0.743998755705876 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_4CP4T22V NA 2.05326565655189 NA NA NA differentially expressed NA NA 20:46485529 20:46504740 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_5PEFNDCY NA 0.39931525230626 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_5PEFNDCY NA 0.39931525230626 NA NA NA no change NA NA 20:46474501 20:46506458 ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_5PEFNDCY NA 0.39931525230626 NA NA NA no change NA NA 20:46474501 20:46503097 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_5VQP0E6K NA 2.01636377262129 NA NA NA differentially expressed NA NA 20:46496711 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_5VQP0E6K NA 2.01636377262129 NA NA NA differentially expressed NA NA 20:46481050 20:46506458 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_5VQP0E6K NA 2.01636377262129 NA NA NA differentially expressed NA NA 20:46485529 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_6MZ7FRZH NA 0.258547180095515 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_6MZ7FRZH NA 0.258547180095515 NA NA NA no change NA NA 20:46492682 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_7G42J2SK NA 1.26418649905248 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 2 4 high [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_7G42J2SK NA 1.26418649905248 NA NA NA no change NA NA 20:46485529 20:46504740 ARRIBA other 1 3 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_7G42J2SK NA 1.26418649905248 NA NA NA no change NA NA 20:46492682 20:46509751 ARRIBA other 1 3 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_7G42J2SK NA 1.26418649905248 NA NA NA no change NA NA 20:46492682 20:46504740 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_7G42J2SK NA 1.26418649905248 NA NA NA no change NA NA 20:46496711 20:46504740 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_9M5XJ10G NA 1.45928182056618 NA NA NA no change NA NA 20:46485529 20:46504740 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_9M5XJ10G NA 1.45928182056618 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_9M5XJ10G NA 1.45928182056618 NA NA NA no change NA NA 20:46474501 20:46503097 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_CZ3ER8DY NA 0.619539836123319 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_CZ3ER8DY NA 0.619539836123319 NA NA NA no change NA NA 20:46492682 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_DGTPWJ59 NA 0.23798531523648 NA NA NA no change NA NA 20:46492682 20:46506458 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_DGTPWJ59 NA 0.23798531523648 NA NA NA no change NA NA 20:46492682 20:46503097 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_DGTPWJ59 NA 0.23798531523648 NA NA NA no change NA NA 20:46474501 20:46509751 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_G63HYD6N NA 1.06612476521267 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_G63HYD6N NA 1.06612476521267 NA NA NA no change NA NA 20:46474501 20:46506458 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_G63HYD6N NA 1.06612476521267 NA NA NA no change NA NA 20:46496711 20:46504740 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_G63HYD6N NA 1.06612476521267 NA NA NA no change NA NA 20:46492682 20:46504740 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_G63HYD6N NA 1.06612476521267 NA NA NA no change NA NA 20:46485529 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_KVNGNETA NA 0.933337974615594 NA NA NA no change NA NA 20:46474501 20:46506458 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_KVNGNETA NA 0.933337974615594 NA NA NA no change NA NA 20:46485529 20:46506458 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_KVNGNETA NA 0.933337974615594 NA NA NA no change NA NA 20:46485529 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_N6NE6B3W NA 0.363701372950544 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_N8J1DP02 NA -0.164908565636937 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_N8J1DP02 NA -0.164908565636937 NA NA NA no change NA NA 20:46481050 20:46504740 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_N8J1DP02 NA -0.164908565636937 NA NA NA no change NA NA 20:46496711 20:46509751 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_NGHK9RZP NA 1.543134242621 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_NGHK9RZP NA 1.543134242621 NA NA NA no change NA NA 20:46496711 20:46504740 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_NGHK9RZP NA 1.543134242621 NA NA NA no change NA NA 20:46485529 20:46504740 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_NGHK9RZP NA 1.543134242621 NA NA NA no change NA NA 20:46492682 20:46506458 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_QEYPFYHD NA 1.11713193613377 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_QEYPFYHD NA 1.11713193613377 NA NA NA no change NA NA 20:46485529 20:46506458 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_QEYPFYHD NA 1.11713193613377 NA NA NA no change NA NA 20:46496711 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_QEYPFYHD NA 1.11713193613377 NA NA NA no change NA NA 20:46485529 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_QPPPGYP4 NA 1.08138046532088 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_W41S7B55 NA -0.610524417578614 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_W4HGV6E7 NA -0.103902394349837 NA NA NA no change NA NA 20:46457675 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_W4HGV6E7 NA -0.103902394349837 NA NA NA no change NA NA 20:46496711 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_W4HGV6E7 NA -0.103902394349837 NA NA NA no change NA NA 20:46492682 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_W4HGV6E7 NA -0.103902394349837 NA NA NA no change NA NA 20:46474501 20:46506458 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_W4HGV6E7 NA -0.103902394349837 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_W80TJC27 NA 0.53548222856885 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_W80TJC27 NA 0.53548222856885 NA NA NA no change NA NA 20:46485529 20:46504740 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_WRHDP7WF NA -0.312692567880535 NA NA NA no change NA NA 20:46492682 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_WRHDP7WF NA -0.312692567880535 NA NA NA no change NA NA 20:46474501 20:46509751 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL031686.1--ZNF334 BS_WRHDP7WF NA -0.312692567880535 NA NA NA no change NA NA 20:46485529 20:46504740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA -AL035409.1--ST6GALNAC5 BS_1G3WYEN3 NA 1.82759596191884 NA NA NA no change NA NA 1:77068843 1:77061012 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:+:[2209]],duplication AL035409.1 NA ST6GALNAC5 NA NA NA NA NA NA -AL035409.1--ST6GALNAC5 BS_6P50QTPP NA 1.30152011533845 NA NA NA no change NA NA 1:77076850 1:77062975 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:+:[2209]],duplication AL035409.1 NA ST6GALNAC5 NA NA NA NA NA NA -AL035409.1--ST6GALNAC5 BS_CXVGG342 NA 3.27631201185396 NA NA NA differentially expressed NA NA 1:77068843 1:77061012 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:+:[2209]],duplication AL035409.1 NA ST6GALNAC5 NA NA NA NA NA NA -AL035409.1--ST6GALNAC5 BS_S2TA8R29 NA 2.05653826358225 NA NA NA differentially expressed NA NA 1:77137746 1:77062975 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:+:[2209]],duplication AL035409.1 NA ST6GALNAC5 NA NA NA NA NA NA -AL050305.1(313455)/AL591501.1(880)--DMD BS_CQSAJ7BF NA 2.90979586789198 NA NA NA differentially expressed NA NA X:33725628 X:33020200 ARRIBA other 3 0 high [],deletion AL050305.1 AL591501.1 DMD NA NA TumorSuppressorGene NA NA NA -AL050305.1(313455)/AL591501.1(880)--DMD BS_SBFNFZ8B NA 1.75377589363587 NA NA NA no change NA NA X:33725628 X:33020200 ARRIBA other 2 0 medium [],deletion AL050305.1 AL591501.1 DMD NA NA TumorSuppressorGene NA NA NA -AL050305.1(313455)/AL591501.1(880)--DMD BS_TG93XC55 NA 2.28466740950452 NA NA NA differentially expressed NA NA X:33725628 X:33020200 ARRIBA other 3 0 high [],deletion AL050305.1 AL591501.1 DMD NA NA TumorSuppressorGene NA NA NA -AL050305.1(313455)/AL591501.1(880)--DMD BS_VNE0ZPBS NA 1.96317939436285 NA NA NA no change NA NA X:33725628 X:33020200 ARRIBA other 3 0 high [],deletion AL050305.1 AL591501.1 DMD NA NA TumorSuppressorGene NA NA NA -AL078590.2--AL078590.3 BS_YH05F9DB NA NA NA NA NA NA NA NA 6:134520509 6:134525543 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr6:0.00Mb],LOCAL_REARRANGEMENT:-:[4729]],duplication AL078590.2 NA AL078590.3 NA NA NA NA NA NA -AL078590.2--AL078590.3 BS_YH05F9DB NA NA NA NA NA NA NA NA 6:134520509 6:134531064 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr6:0.00Mb],LOCAL_REARRANGEMENT:-:[4729]],duplication AL078590.2 NA AL078590.3 NA NA NA NA NA NA -AL079305.1(39056)/G2E3-AS1(25821)--G2E3-AS1 BS_VA5T4KAA NA NA NA NA NA NA NA NA 14:30412171 14:30472503 ARRIBA other 3 0 high [],duplication AL079305.1 G2E3-AS1 G2E3-AS1 NA NA NA NA NA NA -AL110292.1--NOVA1 BS_H1ZS5FMZ NA 3.04095868759806 NA NA NA differentially expressed NA NA 14:27077300 14:26480143 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.24Mb]],inversion AL110292.1 NA NOVA1 NA NA NA NA NA NA -AL121574.1--ADGRF5 BS_6JHXXVR7 NA 4.42884612899075 NA NA NA differentially expressed NA NA 6:37818578 6:46906786 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr6:9.03Mb]],duplication AL121574.1 NA ADGRF5 NA NA NA NA NA NA -AL121574.1--ADGRF5 BS_KE56MMY0 NA 3.13748048361212 NA NA NA differentially expressed NA NA 6:37818578 6:46906786 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:9.03Mb]],duplication AL121574.1 NA ADGRF5 NA NA NA NA NA NA -AL121603.2(32584)/SRP54-AS1(11815)--SRP54-AS1 BS_7BTZQKYY NA 2.28513961540333 2.28513961540333 NA NA differentially expressed differentially expressed NA 14:34909043 14:34926527 ARRIBA other 1 1 low [],duplication AL121603.2 SRP54-AS1 SRP54-AS1 NA NA NA NA NA NA -AL121603.2(32584)/SRP54-AS1(11815)--SRP54-AS1 BS_KVNGNETA NA 4.60477516325085 4.60477516325085 NA NA differentially expressed differentially expressed NA 14:34909043 14:34921713 ARRIBA other 1 0 low [],duplication AL121603.2 SRP54-AS1 SRP54-AS1 NA NA NA NA NA NA -AL121603.2(37276)/SRP54-AS1(7123)--SRP54-AS1 BS_2SFTWNVE NA 4.0467543106225 4.0467543106225 NA NA differentially expressed differentially expressed NA 14:34913735 14:34934131 ARRIBA other 1 1 low [],duplication AL121603.2 SRP54-AS1 SRP54-AS1 NA NA NA NA NA NA -AL121603.2(39630)/SRP54-AS1(4769)--SRP54-AS1 BS_KYF0Q0E7 NA 4.95202355529481 4.95202355529481 NA NA differentially expressed differentially expressed NA 14:34916089 14:34972064 ARRIBA other 1 1 medium [],duplication AL121603.2 SRP54-AS1 SRP54-AS1 NA NA NA NA NA NA -AL121603.2(40130)/SRP54-AS1(4269)--SRP54-AS1 BS_5PJCHF6V NA 5.41176108112727 5.41176108112727 NA NA differentially expressed differentially expressed NA 14:34916589 14:34921713 ARRIBA other 2 0 low [],duplication AL121603.2 SRP54-AS1 SRP54-AS1 NA NA NA NA NA NA -AL121603.2(40130)/SRP54-AS1(4269)--SRP54-AS1 BS_9NJHQE9F NA 4.82239964536743 4.82239964536743 NA NA differentially expressed differentially expressed NA 14:34916589 14:34934131 ARRIBA other 1 0 low [],duplication AL121603.2 SRP54-AS1 SRP54-AS1 NA NA NA NA NA NA -AL121603.2(40130)/SRP54-AS1(4269)--SRP54-AS1 BS_N6NE6B3W NA 3.81397329568448 3.81397329568448 NA NA differentially expressed differentially expressed NA 14:34916589 14:34926527 ARRIBA other 1 0 low [],duplication AL121603.2 SRP54-AS1 SRP54-AS1 NA NA NA NA NA NA -AL121603.2(40130)/SRP54-AS1(4269)--SRP54-AS1 BS_RFMQ7T0T NA 3.07024248313845 3.07024248313845 NA NA differentially expressed differentially expressed NA 14:34916589 14:34921713 ARRIBA other 1 0 low [],duplication AL121603.2 SRP54-AS1 SRP54-AS1 NA NA NA NA NA NA -AL121766.1(47138)/FOXG1-AS1(8218)--FOXG1-AS1 BS_052PZFMK NA 4.47610100726854 4.47610100726854 NA NA differentially expressed differentially expressed NA 14:28720865 14:28738844 ARRIBA other 2 0 low [],duplication AL121766.1 FOXG1-AS1 FOXG1-AS1 NA NA NA NA NA NA -AL121766.1(50541)/FOXG1-AS1(4815)--FOXG1-AS1 BS_GCQFGDTX NA 3.63740209010743 3.63740209010743 NA NA differentially expressed differentially expressed NA 14:28724268 14:28738844 ARRIBA other 3 0 low [],duplication AL121766.1 FOXG1-AS1 FOXG1-AS1 NA NA NA NA NA NA -AL121766.1(50541)/FOXG1-AS1(4815)--FOXG1-AS1 BS_KP735TJ6 NA 4.98849602732845 4.98849602732845 NA NA differentially expressed differentially expressed NA 14:28724268 14:28738844 ARRIBA other 4 0 high [],duplication AL121766.1 FOXG1-AS1 FOXG1-AS1 NA NA NA NA NA NA -AL121890.4--TMEM230 BS_SAA624A4 NA -4.08537458676517 NA NA NA differentially expressed NA NA 20:5067209 20:5069349 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[78]],duplication AL121890.4 NA TMEM230 NA NA NA NA NA NA -AL132656.2--MINPP1 BS_8ZP3CBQA NA 0.629771137117061 NA NA NA no change NA NA 10:79671133 10:87449476 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:7.83Mb]],deletion AL132656.2 NA MINPP1 NA NA NA NA NA NA -AL132656.2--MINPP1 BS_9E7YVFJM NA -0.188942743745072 NA NA NA no change NA NA 10:79671133 10:87449476 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr10:7.83Mb]],deletion AL132656.2 NA MINPP1 NA NA NA NA NA NA -AL132656.2--MINPP1 BS_EFE4YEK3 NA 0.95922882981572 NA NA NA no change NA NA 10:79671133 10:87449476 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:7.83Mb]],deletion AL132656.2 NA MINPP1 NA NA NA NA NA NA -AL132656.2--MINPP1 BS_NYS8TRCB NA -0.85619731607503 NA NA NA no change NA NA 10:79671133 10:87449476 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr10:7.83Mb]],deletion AL132656.2 NA MINPP1 NA NA NA NA NA NA -AL133319.1(2304)/PDE7B(40926)--LINC00271 BS_7BTZQKYY NA 6.673215222466 0.43856763246406 NA NA differentially expressed no change NA 6:135810770 6:135659984 ARRIBA other 2 0 low [],duplication AL133319.1 PDE7B LINC00271 NA NA NA NA NA NA -AL133319.1(2304)/PDE7B(40926)--LINC00271 BS_Q5WZYWCT NA 5.47126068527545 -0.0473973715534294 NA NA differentially expressed no change NA 6:135810770 6:135659980 ARRIBA other 2 2 medium [],duplication AL133319.1 PDE7B LINC00271 NA NA NA NA NA NA -AL133346.1--ALDH8A1 BS_MN5XVP5A NA 0.697186368769568 NA NA NA no change NA NA 6:132070840 6:134933032 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr6:2.84Mb]],duplication/3'-3' AL133346.1 NA ALDH8A1 NA NA NA NA NA NA -AL133410.1--HMGB3P23(327855)/RNA5SP281(320543) BS_V3Z3DB4N NA -0.0400103385914836 NA NA NA no change NA NA 9:35790340 9:31973015 ARRIBA other 4 0 medium [],duplication AL133410.1 NA HMGB3P23 RNA5SP281 NA NA NA NA NA -AL136317.2--AL136317.3 BS_W60RQAKK NA NA NA NA NA NA NA NA 9:66020016 9:66029422 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr9:0.01Mb],LOCAL_INVERSION:-:+:[8448]],duplication/5'-5' AL136317.2 NA AL136317.3 NA NA NA NA NA NA -AL136980.1--ERMP1 BS_7BTZQKYY NA 1.23606243076522 NA NA NA no change NA NA 9:5719431 9:5831027 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr9:0.04Mb],LOCAL_REARRANGEMENT:-:[44832]],duplication AL136980.1 NA ERMP1 NA NA NA NA NA NA -AL136980.1--KIAA2026 BS_5965SFPZ NA 2.21371111203076 NA NA NA differentially expressed NA NA 9:5719432 9:5914062 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr9:0.16Mb]],duplication AL136980.1 NA KIAA2026 NA NA NA NA NA NA -AL136980.1--KIAA2026 BS_FEPRNEXX NA 4.32132220944767 NA NA NA differentially expressed NA NA 9:5719432 9:5914062 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr9:0.16Mb]],duplication AL136980.1 NA KIAA2026 NA NA NA NA NA NA -AL136980.1--KIAA2026 BS_FEPRNEXX NA 4.32132220944767 NA NA NA differentially expressed NA NA 9:5720180 9:5914062 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr9:0.16Mb]],duplication AL136980.1 NA KIAA2026 NA NA NA NA NA NA -AL138694.1--TNFSF13B BS_23QW0BBA NA 11.3027503644888 NA NA NA differentially expressed NA NA 13:108335572 13:108303253 ARRIBA frameshift 2 1 low [INTRACHROMOSOMAL[chr13:0.03Mb],LOCAL_REARRANGEMENT:+:[26870]],duplication AL138694.1 NA TNFSF13B NA NA Oncogene NA NA NA -AL138752.2--CUX1 BS_74FS6GMW NA 0.769530514325184 NA NA NA no change NA NA 9:38067929 7:102239320 ARRIBA frameshift 3 1 medium [INTERCHROMOSOMAL[chr9--chr7]],translocation AL138752.2 NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -AL138752.2--CUX1 BS_74FS6GMW NA 0.769530514325184 NA NA NA no change NA NA 9:37974622 7:102227367 ARRIBA in-frame 1 1 medium [INTERCHROMOSOMAL[chr9--chr7]],translocation AL138752.2 NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -AL138752.2--LINC00094 BS_A0DYVX9J NA 4.16794143645263 NA NA NA differentially expressed NA NA 9:37831730 9:134025334 ARRIBA other 1 3 medium [INTRACHROMOSOMAL[chr9:95.96Mb]],inversion AL138752.2 NA LINC00094 NA NA NA NA NA NA -AL138752.2--LINC00094 BS_A0DYVX9J NA 4.16794143645263 NA NA NA differentially expressed NA NA 9:37899829 9:134025845 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr9:95.96Mb]],inversion AL138752.2 NA LINC00094 NA NA NA NA NA NA -AL138752.2--PSIP1 BS_W3R88RFP NA -1.18160082012232 NA NA NA no change NA NA 9:37955883 9:15466859 ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr9:22.08Mb]],deletion AL138752.2 NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA -AL138752.2--PSIP1 BS_W3R88RFP NA -1.18160082012232 NA NA NA no change NA NA 9:37953831 9:15468273 ARRIBA other 6 1 medium [INTRACHROMOSOMAL[chr9:22.08Mb]],deletion AL138752.2 NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA -AL138752.2--PSIP1 BS_W3R88RFP NA -1.18160082012232 NA NA NA no change NA NA 9:37955883 9:15465580 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr9:22.08Mb]],deletion AL138752.2 NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA -AL138752.2--VAV2(32730)/LINC00094(105) BS_A0DYVX9J NA 1.46564424767181 NA 4.16794143645263 NA no change NA differentially expressed 9:37831730 9:134025334 ARRIBA other 8 0 low [],inversion AL138752.2 NA VAV2 LINC00094 NA Oncogene NA NA NA -AL138830.1(4855)/RNU6-475P(326143)--HDAC2-AS2 BS_7B89YR6K NA NA NA NA NA NA NA NA 6:114540730 6:114371592 ARRIBA other 2 0 medium [],duplication AL138830.1 RNU6-475P HDAC2-AS2 NA NA NA NA NA NA -AL138830.1(4855)/RNU6-475P(326143)--HDAC2-AS2 BS_M15PW2N0 NA NA NA NA NA NA NA NA 6:114540730 6:114371592 ARRIBA other 6 0 high [],duplication AL138830.1 RNU6-475P HDAC2-AS2 NA NA NA NA NA NA -AL138830.1(4855)/RNU6-475P(326143)--HDAC2-AS2 BS_M4NVX721 NA NA NA NA NA NA NA NA 6:114540730 6:114371592 ARRIBA other 2 1 high [],duplication AL138830.1 RNU6-475P HDAC2-AS2 NA NA NA NA NA NA -AL138830.1(4855)/RNU6-475P(326143)--HDAC2-AS2 BS_RD4D5F9F NA NA NA NA NA NA NA NA 6:114540730 6:114371592 ARRIBA other 2 1 high [],duplication AL138830.1 RNU6-475P HDAC2-AS2 NA NA NA NA NA NA -AL139158.2--CACHD1 BS_RCCN63K6 NA 0.185945577133087 NA NA NA no change NA NA 1:38047614 1:64641820 ARRIBA other 8 0 high [INTRACHROMOSOMAL[chr1:26.35Mb]],deletion AL139158.2 NA CACHD1 NA NA NA NA NA NA -AL139327.2(19327)/ANKRD26P3(7393)--ANKRD26P3 BS_3PYESPHA NA 39.96104488045 39.96104488045 NA NA differentially expressed differentially expressed NA 13:19283200 13:19317057 ARRIBA other 3 0 medium [],duplication AL139327.2 ANKRD26P3 ANKRD26P3 NA NA NA NA NA NA -AL157688.1(12728)/LINC02296(7952)--LINC02296 BS_6T4JGBGY NA NA NA NA NA NA NA NA 14:87345118 14:87441029 ARRIBA other 1 1 low [],duplication AL157688.1 LINC02296 LINC02296 NA NA NA NA NA NA -AL157937.1(2777)/DMRTA1(229392)--LINC01239 BS_MN5XVP5A NA 78.1576809694734 29.061190902617 NA NA differentially expressed differentially expressed NA 9:22217449 9:22674443 ARRIBA other 8 0 medium [],deletion AL157937.1 DMRTA1 LINC01239 NA NA NA TranscriptionFactor NA NA -AL158198.1--UBA2 BS_NJ4WPQVK NA 2.20407138395462 NA NA NA differentially expressed NA NA 6:20291858 19:34431861 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr6--chr19]],translocation/3'-3' AL158198.1 NA UBA2 NA NA NA NA NA NA -AL160279.1(17259)/CTSL3P(13241)--SMOX BS_TGS109T3 NA -1.01983581933577 -0.0966299681309815 NA NA no change no change NA 9:87759212 20:4175030 ARRIBA other 3 0 medium [],translocation AL160279.1 CTSL3P SMOX NA NA NA NA NA NA -AL161616.2(9911)/AL161616.1(35504)--AL161616.2 BS_6T4JGBGY NA NA NA NA NA NA NA NA 13:31447910 13:31437719 ARRIBA other 6 0 low [],duplication AL161616.2 AL161616.1 AL161616.2 NA NA NA NA NA NA -AL161716.1--AL161716.1(11567)/Metazoa_SRP(227796) BS_6T4JGBGY NA NA NA -6.2447542163921 NA NA NA differentially expressed 13:34671000 13:34682749 ARRIBA other 35 5 medium [],duplication AL161716.1 NA AL161716.1 Metazoa_SRP NA NA NA NA NA -AL161935.3--ZEB1 BS_55P8HPYD NA 6.55668877469434 NA NA NA differentially expressed NA NA 10:31707306 10:31461037 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.16Mb]],inversion AL161935.3 NA ZEB1 NA NA CosmicCensus, TranscriptionFactor NA NA NA -AL162511.1--LINC00609 BS_0T17SY47 NA 5.01715063899089 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_0WVJYM9R NA 3.27371487619788 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_0WVJYM9R NA 3.27371487619788 NA NA NA differentially expressed NA NA 14:36215058 14:36164120 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_1T19NFJ8 NA 6.67121633573436 NA NA NA differentially expressed NA NA 14:36215058 14:36164120 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_1T19NFJ8 NA 6.67121633573436 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_23W9EPFE NA 7.81357125468034 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_258RRGDM NA 6.47280564398528 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_2XD3MNKD NA 7.29874557692151 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_3F4FQJMR NA 6.45820990271202 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_49BQS7Z6 NA 5.53010655990534 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 7 1 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_60K3EQ9S NA 6.20589304839555 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 2 1 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_8PNA0V6R NA 5.20778984166848 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_8PNA0V6R NA 5.20778984166848 NA NA NA differentially expressed NA NA 14:36215058 14:36164120 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_9F09XV62 NA 6.50182232614942 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_9RT63JD9 NA 5.65386306668447 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_AG3D3435 NA 5.1383440917447 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_AG3D3435 NA 5.1383440917447 NA NA NA differentially expressed NA NA 14:36215058 14:36164120 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_C6ZZ3FY5 NA 7.34486558797169 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_C80S5N37 NA 6.07284146443457 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_E4QK839R NA 5.87225602437272 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_GG9W3J9Y NA 4.65937595056362 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 2 1 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_JHGW42S6 NA 3.21465825685865 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_M1T1K5WV NA 3.32027836098366 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_N8J1DP02 NA 2.23668391873751 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_NT9NZYFD NA 4.35062441036385 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_NT9NZYFD NA 4.35062441036385 NA NA NA differentially expressed NA NA 14:36215058 14:36164120 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_QC3XCE6X NA 3.33182654898165 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 2 1 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_QHS3V0GP NA 2.78539301683157 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_V96WVE3Z NA 3.80669683483623 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 3 1 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_W18SF91A NA 6.24229036726898 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_WFD0GE5X NA 6.15325586523903 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 5 1 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_WRHDP7WF NA 4.1812535030855 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 11 0 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_WYERXS4G NA 8.10066186927876 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_X4X1SFSE NA 5.61102631995923 NA NA NA differentially expressed NA NA 14:36215515 14:36164120 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162511.1--LINC00609 BS_X4X1SFSE NA 5.61102631995923 NA NA NA differentially expressed NA NA 14:36215058 14:36164120 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA -AL162726.3--AL162726.3(143413)/RASEF(55978) BS_CYEY58NY NA NA NA -0.264829083300083 NA NA NA no change 9:82496858 9:82923607 ARRIBA other 14 0 high [],deletion AL162726.3 NA AL162726.3 RASEF NA NA NA NA NA -AL353588.1--AL353588.1 BS_34201DKZ NA NA NA NA NA NA NA NA 6:44376473 6:44352726 ARRIBA other 18 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing AL353588.1 NA AL353588.1 NA NA NA NA NA NA -AL353588.1--AL353588.1 BS_3F4FQJMR NA NA NA NA NA NA NA NA 6:44376473 6:44352726 ARRIBA other 36 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing AL353588.1 NA AL353588.1 NA NA NA NA NA NA -AL353588.1--AL353588.1 BS_7BTZQKYY NA NA NA NA NA NA NA NA 6:44376473 6:44352726 ARRIBA other 202 15 high [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing AL353588.1 NA AL353588.1 NA NA NA NA NA NA -AL353588.1--AL353588.1 BS_HC44ZA0V NA NA NA NA NA NA NA NA 6:44376473 6:44352726 ARRIBA other 23 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing AL353588.1 NA AL353588.1 NA NA NA NA NA NA -AL353588.1--AL353588.1 BS_PKK3BZRG NA NA NA NA NA NA NA NA 6:44376473 6:44352726 ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing AL353588.1 NA AL353588.1 NA NA NA NA NA NA -AL353588.1--AL353588.1 BS_Z85M2R3N NA NA NA NA NA NA NA NA 6:44376473 6:44352726 ARRIBA other 41 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing AL353588.1 NA AL353588.1 NA NA NA NA NA NA -AL353613.1--RNU2-36P(166681)/AL353613.1(42338) BS_C6ZZ3FY5 NA NA NA NA NA NA NA NA 9:86632268 9:86589809 ARRIBA other 10 3 high [],duplication AL353613.1 NA RNU2-36P AL353613.1 NA NA NA NA NA -AL353613.1--RNU2-36P(166681)/AL353613.1(42338) BS_GG9W3J9Y NA NA NA NA NA NA NA NA 9:86632268 9:86589809 ARRIBA other 18 0 high [],duplication AL353613.1 NA RNU2-36P AL353613.1 NA NA NA NA NA -AL355306.2--AL355306.2 BS_QC3XCE6X NA NA NA NA NA NA NA NA 1:106048346 1:106041567 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.17Mb]],duplication/non-canonical_splicing AL355306.2 NA AL355306.2 NA NA NA NA NA NA -AL355483.4--AL606760.1 BS_A3QZB9Y2 NA NA NA NA NA NA NA NA 1:53268014 1:53241847 ARRIBA other 14 1 high [INTRACHROMOSOMAL[chr1:0.03Mb],LOCAL_REARRANGEMENT:+:[25152]],duplication AL355483.4 NA AL606760.1 NA NA NA NA NA NA -AL356289.1--TRABD2B(14635)/AL356289.1(39129) BS_J60G8DMK 26.9912910584012 8.3122526013275 NA 26.9912910584012 differentially expressed differentially expressed NA differentially expressed 1:48055196 1:48011530 ARRIBA other 5 0 high [],duplication AL356289.1 NA TRABD2B AL356289.1 NA NA NA NA NA -AL356289.1--TRABD2B(14635)/AL356289.1(39129) BS_TAHV8N04 64.0689111874955 7.92801379691636 NA 64.0689111874955 differentially expressed differentially expressed NA differentially expressed 1:48055196 1:48011530 ARRIBA other 4 0 high [],duplication AL356289.1 NA TRABD2B AL356289.1 NA NA NA NA NA -AL356289.1--TRABD2B(14635)/AL356289.1(39129) BS_TZ5D0A7R 15.1502939961638 5.30934406909159 NA 15.1502939961638 differentially expressed differentially expressed NA differentially expressed 1:48055196 1:48011530 ARRIBA other 3 0 medium [],duplication AL356289.1 NA TRABD2B AL356289.1 NA NA NA NA NA -AL356585.3--U2(16630)/CU459211.1(186475) BS_XG0DBWVT NA 0.574568592510197 NA 36.9070950391318 NA no change NA differentially expressed 13:18334935 22:10752913 ARRIBA other 2 0 medium [],translocation AL356585.3 NA U2 CU459211.1 NA NA NA NA NA -AL357052.1--AL022068.1 BS_3F4FQJMR NA NA NA NA NA NA NA NA 6:19301943 6:19325798 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr6:0.00Mb],LOCAL_REARRANGEMENT:-:[3967]],duplication AL357052.1 NA AL022068.1 NA NA NA NA NA NA -AL357052.1--AL022068.1 BS_7BTZQKYY NA NA NA NA NA NA NA NA 6:19301943 6:19325798 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr6:0.00Mb],LOCAL_REARRANGEMENT:-:[3967]],duplication AL357052.1 NA AL022068.1 NA NA NA NA NA NA -AL357052.1--AL022068.1 BS_7BTZQKYY NA NA NA NA NA NA NA NA 6:19320918 6:19388638 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr6:0.00Mb],LOCAL_REARRANGEMENT:-:[3967]],duplication AL357052.1 NA AL022068.1 NA NA NA NA NA NA -AL357052.1--AL022068.1 BS_FAVRBEW7 NA NA NA NA NA NA NA NA 6:19306237 6:19325798 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr6:0.00Mb],LOCAL_REARRANGEMENT:-:[3967]],duplication AL357052.1 NA AL022068.1 NA NA NA NA NA NA -AL357052.1--AL022068.1 BS_SFKZSJN1 NA NA NA NA NA NA NA NA 6:19297161 6:19325798 ARRIBA other 1 2 low [INTRACHROMOSOMAL[chr6:0.00Mb],LOCAL_REARRANGEMENT:-:[3967]],duplication AL357052.1 NA AL022068.1 NA NA NA NA NA NA -AL357078.1--KDF1 BS_RCCN63K6 NA 5.2762926545691 NA NA NA differentially expressed NA NA 1:65066628 1:26950756 ARRIBA other 11 1 high [INTRACHROMOSOMAL[chr1:38.11Mb]],deletion AL357078.1 NA KDF1 NA NA NA NA NA NA -AL357078.1--KDF1 BS_RCCN63K6 NA 5.2762926545691 NA NA NA differentially expressed NA NA 1:65067604 1:26950756 ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr1:38.11Mb]],deletion AL357078.1 NA KDF1 NA NA NA NA NA NA -AL358075.4--LRRC41 BS_QEYPFYHD NA 1.72539713749334 NA NA NA no change NA NA 1:46080642 1:46303368 ARRIBA in-frame 13 3 high [INTRACHROMOSOMAL[chr1:0.08Mb],LOCAL_REARRANGEMENT:-:[84708]],duplication AL358075.4 NA LRRC41 NA NA NA NA NA NA -AL358075.4--LRRC41 BS_QEYPFYHD NA 1.72539713749334 NA NA NA no change NA NA 1:46080642 1:46298370 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.08Mb],LOCAL_REARRANGEMENT:-:[84708]],duplication AL358075.4 NA LRRC41 NA NA NA NA NA NA -AL358075.4--LRRC41 BS_Z7PKVY9J NA 1.34510771235459 NA NA NA no change NA NA 1:46080642 1:46303394 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.08Mb],LOCAL_REARRANGEMENT:-:[84708]],duplication AL358075.4 NA LRRC41 NA NA NA NA NA NA -AL358394.1--AL512324.3 BS_6NRTJSYK NA NA NA NA NA NA NA NA 10:45181082 10:45194254 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr10:0.01Mb],LOCAL_REARRANGEMENT:-:[5865]],duplication AL358394.1 NA AL512324.3 NA NA NA NA NA NA -AL358394.1--AL512324.3 BS_JR5ATB7G NA NA NA NA NA NA NA NA 10:45181082 10:45194254 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr10:0.01Mb],LOCAL_REARRANGEMENT:-:[5865]],duplication AL358394.1 NA AL512324.3 NA NA NA NA NA NA -AL358972.1(176429)/AL450345.1(302677)--MYB BS_HC44ZA0V NA 5.38009569149029 NA NA NA differentially expressed NA NA 6:164525073 6:135185903 ARRIBA other 2 0 medium [],duplication AL358972.1 AL450345.1 MYB NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -AL359634.1(29682)/MCM9(340)--MCM9 BS_5PV5N4HQ NA 3.18431175922635 3.18431175922635 NA NA differentially expressed differentially expressed NA 6:118813102 6:118856545 ARRIBA other 3 0 high [],duplication AL359634.1 MCM9 MCM9 NA NA TumorSuppressorGene TumorSuppressorGene NA NA -AL359634.1(29682)/MCM9(340)--MCM9 BS_8F9BDWY4 NA 2.84444965875937 2.84444965875937 NA NA differentially expressed differentially expressed NA 6:118813102 6:118856545 ARRIBA other 5 0 medium [],duplication AL359634.1 MCM9 MCM9 NA NA TumorSuppressorGene TumorSuppressorGene NA NA -AL359634.1(29682)/MCM9(340)--MCM9 BS_N6NE6B3W NA 1.48388204738549 1.48388204738549 NA NA no change no change NA 6:118813102 6:118856545 ARRIBA other 3 0 high [],duplication AL359634.1 MCM9 MCM9 NA NA TumorSuppressorGene TumorSuppressorGene NA NA -AL359634.1(29682)/MCM9(340)--MCM9 BS_NRPG5K4K NA 1.6785391961021 1.6785391961021 NA NA no change no change NA 6:118813102 6:118856545 ARRIBA other 3 0 high [],duplication AL359634.1 MCM9 MCM9 NA NA TumorSuppressorGene TumorSuppressorGene NA NA -AL359634.1(29682)/MCM9(340)--MCM9 BS_PEP9NZXN NA 3.36695183261354 3.36695183261354 NA NA differentially expressed differentially expressed NA 6:118813102 6:118856545 ARRIBA other 3 0 medium [],duplication AL359634.1 MCM9 MCM9 NA NA TumorSuppressorGene TumorSuppressorGene NA NA -AL360085.1(111216)/RNU6-1163P(33807)--SOBP BS_7327SDAQ NA 1.7027803696699 NA NA NA no change NA NA 6:112937686 6:107633514 ARRIBA other 3 1 high [],duplication AL360085.1 RNU6-1163P SOBP NA NA NA NA NA NA -AL360093.1(15811)/AC096642.1(29466)--LYPLAL1 BS_2SFTWNVE NA 0.27831307570777 NA NA NA no change NA NA 1:219241308 1:219210515 ARRIBA other 1 0 low [],duplication AL360093.1 AC096642.1 LYPLAL1 NA NA NA NA NA NA -AL360093.1(15811)/AC096642.1(29466)--LYPLAL1 BS_ME3HKN2C NA 1.42167808932113 NA NA NA no change NA NA 1:219241308 1:219211492 ARRIBA other 1 0 low [],duplication AL360093.1 AC096642.1 LYPLAL1 NA NA NA NA NA NA -AL360093.1(20232)/AC096642.1(25045)--LYPLAL1 BS_X4X1SFSE NA 1.342563810368 NA NA NA no change NA NA 1:219245729 1:219193082 ARRIBA other 1 1 low [],duplication AL360093.1 AC096642.1 LYPLAL1 NA NA NA NA NA NA -AL360093.1(5877)/AC096642.1(39400)--LYPLAL1 BS_680K119G NA -0.88641733477805 NA NA NA no change NA NA 1:219231374 1:219179147 ARRIBA other 1 0 low [],duplication AL360093.1 AC096642.1 LYPLAL1 NA NA NA NA NA NA -AL390067.1--KIAA1958 BS_6T4JGBGY NA 5.50986702686343 NA NA NA differentially expressed NA NA 9:112749787 9:112645650 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr9:0.08Mb],LOCAL_INVERSION:-:+:[79505]],duplication/3'-3' AL390067.1 NA KIAA1958 NA NA NA NA NA NA -AL390726.6--AL390726.6 BS_3MYEMXPQ NA NA NA NA NA NA NA NA 9:38462233 9:38456118 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing AL390726.6 NA AL390726.6 NA NA NA NA NA NA -AL390726.6--AL390726.6 BS_470DYRJQ NA NA NA NA NA NA NA NA 9:38462233 9:38456118 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing AL390726.6 NA AL390726.6 NA NA NA NA NA NA -AL390726.6--AL390726.6 BS_4PH1MBGR NA NA NA NA NA NA NA NA 9:38462233 9:38456118 ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing AL390726.6 NA AL390726.6 NA NA NA NA NA NA -AL390726.6--AL390726.6 BS_90B22NGP NA NA NA NA NA NA NA NA 9:38462233 9:38456118 ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing AL390726.6 NA AL390726.6 NA NA NA NA NA NA -AL390726.6--AL390726.6 BS_AMQGM1V9 NA NA NA NA NA NA NA NA 9:38462233 9:38456118 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing AL390726.6 NA AL390726.6 NA NA NA NA NA NA -AL390726.6--AL390726.6 BS_B8T7M0WV NA NA NA NA NA NA NA NA 9:38462233 9:38456118 ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing AL390726.6 NA AL390726.6 NA NA NA NA NA NA -AL390726.6--AL390726.6 BS_QEYPFYHD NA NA NA NA NA NA NA NA 9:38471933 9:38426650 ARRIBA other 4 3 medium [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication AL390726.6 NA AL390726.6 NA NA NA NA NA NA -AL390726.6--AL390726.6 BS_QPPPGYP4 NA NA NA NA NA NA NA NA 9:38462233 9:38456118 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing AL390726.6 NA AL390726.6 NA NA NA NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_052PZFMK NA 15.2539010911498 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 16 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_09R7GDA7 NA 7.40860500808015 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 2 1 low [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_1HQ76V6D NA 13.8759075579214 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 5 0 low [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_1QXEC43H NA 18.6999801288371 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 6 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_2SFTWNVE NA 14.6747289105467 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_2Z1MKS84 NA 18.8419055459129 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 7 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_37GTVG4N NA 12.4548801398226 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_3F5PR9GS NA 14.9991812999179 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_3MYEMXPQ NA 14.9765865196882 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 3 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_3NWQXPQV NA 13.9284096672584 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 8 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_470DYRJQ NA 5.08604851116024 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_4PH1MBGR NA 15.9249558960778 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 9 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_4W1DBAN4 NA 3.94743453515826 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 3 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_5PJCHF6V NA 14.4255719508028 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 4 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_61E80SD6 NA 15.2360197984842 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_8GW1TMV2 NA 15.5192991091026 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 3 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_8MA5B8Y9 NA 0.538719771602788 NA NA NA no change NA NA 9:38471933 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_8S86CM61 NA 14.8493020753933 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_9M5XJ10G NA 16.0302170147298 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 5 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_9NZ2D6AD NA 15.842974072316 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_9V633J1X NA 8.2671411521351 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_AWH9757B NA 13.7608593551509 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 2 1 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_B8T7M0WV NA 4.06087618889669 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 2 1 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_BPWEFR89 NA 18.1791809341701 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_BSV07M7Z NA 14.2391595512236 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_DGTPWJ59 NA 6.06362923108338 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 4 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_E3BAT4C1 NA 16.84358997053 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 3 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_ERWT0ZWE NA 14.8372837676763 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_G00FHF3Q NA 14.0113415229908 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_GE2RVZE6 NA 13.6963671738968 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 4 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_GNV89A5P NA 15.1017746860425 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 3 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_GR46VD0Q NA 14.2675302351405 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 3 0 low [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_GS1KR5PK NA 8.60445775205755 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_GW0GKWMS NA 7.92305913166777 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_H4B5Y6S0 NA 15.3299600039441 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 10 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_HCP5C912 NA 1.33471223731307 NA NA NA no change NA NA 9:38471933 9:38426650 ARRIBA other 4 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_HD4EJYE3 NA 16.4197538346507 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 4 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_HF3RNN2T NA 14.9283820659427 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_HHPA8NJ2 NA 15.5473096557235 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_HKZENFDA NA 16.5159663793704 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 16 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_HZE3KYZ1 NA 14.6283268448143 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 2 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_HZRM07TW NA 18.123220368634 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 6 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_J1AB8PMA NA 16.4650445498642 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 4 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_JX449BF5 NA 8.65997967331712 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 4 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_KN92S7YQ NA 13.1262621951648 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_KYF0Q0E7 NA 12.958981455903 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 4 3 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_ME3HKN2C NA 3.9291394581682 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 3 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_N6NE6B3W NA 5.4332169709157 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 4 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_NDN62H0S NA 5.31781657194186 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 2 0 low [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_NZ71XCG3 NA 15.8413632787429 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 4 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_QEYPFYHD NA 16.7420518028815 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 14 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_QPPPGYP4 NA 15.1408436322231 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 5 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_QRDT19KS NA 17.0600521481894 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 9 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_QWNBZ9RJ NA 12.805402948469 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 4 2 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_RCC8BXVE NA 15.1897048805939 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 2 0 low [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_RSRPX3S8 NA 18.7736910403411 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 10 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_S1M423AB NA 14.3666751905005 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_S69QZAJR NA 18.4694593349409 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 3 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_SKGJ5SY9 NA 14.7700584684128 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_TE0GVDNG NA 14.9001872472472 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_TJTEF70D NA 9.37209683747397 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 2 1 low [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_TV5B86ZD NA 11.9040058221921 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 8 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_TW8DQH8J NA 15.9121192455138 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 2 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_TYAYZ9ZW NA 14.9801277605578 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 1 0 low [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_V96WVE3Z NA 11.6747013250548 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_VMEX27TN NA 13.933364086478 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_VNE0ZPBS NA 2.42614110186976 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_VNWKNRY4 NA 11.5283510683818 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 6 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_W644VEVE NA 17.1003075839467 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 4 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_W9AT0MR7 NA 16.1673145686191 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 6 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_WCRKYV0T NA 1.20561926280591 NA NA NA no change NA NA 9:38471933 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_XJTW0P8P NA 4.27060850405178 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 5 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_Y7F9E2E9 NA 3.09234315278268 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 3 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_Y8D1F5WW NA 17.5899645609897 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 6 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_YEB88D32 NA 12.2710376297702 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_Z7PKVY9J NA 14.7964470623079 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 6 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_ZR96A4FH NA 2.08094180949668 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 5 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_ZRM0W01M NA 4.68576238169125 NA NA NA differentially expressed NA NA 9:38471933 9:38426650 ARRIBA other 4 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_ZXYDSBM9 NA 17.2478705235594 NA NA NA differentially expressed NA NA 9:38462233 9:38426650 ARRIBA other 7 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA -AL445673.1--PRRX1(68185)/MROH9(127867) BS_42DY6WS7 NA 4.91148413088149 NA 1.31281207570786 NA differentially expressed NA no change 1:171251523 1:170807604 ARRIBA other 1 2 medium [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -AL445673.1--PRRX1(68185)/MROH9(127867) BS_5PEFNDCY NA 4.40129500193201 NA -0.212040043078493 NA differentially expressed NA no change 1:171247581 1:170807604 ARRIBA other 2 3 medium [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -AL445673.1--PRRX1(68185)/MROH9(127867) BS_CB6VK7PB NA 4.70296537129452 NA -0.212040043078493 NA differentially expressed NA no change 1:171251523 1:170807604 ARRIBA other 2 3 high [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -AL445673.1--PRRX1(68185)/MROH9(127867) BS_EXGBH3TD NA 4.95651306289348 NA -0.212040043078493 NA differentially expressed NA no change 1:171251523 1:170807604 ARRIBA other 1 2 high [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -AL445673.1--PRRX1(68185)/MROH9(127867) BS_GYA4V1RD NA 3.73271585580526 NA 1.31281207570786 NA differentially expressed NA no change 1:171247581 1:170807604 ARRIBA other 1 3 medium [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -AL445673.1--PRRX1(68185)/MROH9(127867) BS_KDSTG5YY NA -1.36249965190086 NA 1.31281207570786 NA no change NA no change 1:171251523 1:170807604 ARRIBA other 1 2 high [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -AL445673.1--PRRX1(68185)/MROH9(127867) BS_QB7YGKN1 NA 5.63065886856191 NA 4.31773920666928 NA differentially expressed NA differentially expressed 1:171247581 1:170807604 ARRIBA other 1 2 medium [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -AL445673.1--PRRX1(68185)/MROH9(127867) BS_S1KK7XRH NA 3.91779192761128 NA -0.212040043078493 NA differentially expressed NA no change 1:171247581 1:170807604 ARRIBA other 3 0 medium [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -AL445673.1--PRRX1(68185)/MROH9(127867) BS_Z6BWR941 NA 4.94499620108685 NA 1.31281207570786 NA differentially expressed NA no change 1:171247581 1:170807604 ARRIBA other 1 3 medium [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -AL451164.1--CCND2 BS_A0DYVX9J NA 11.4918089677634 NA NA NA differentially expressed NA NA 10:3256460 12:4299860 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr10--chr12]],translocation AL451164.1 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA -AL512356.1--TMOD2 BS_TZ5D0A7R NA -3.00436286550644 NA NA NA differentially expressed NA NA 14:105155562 15:51809529 ARRIBA other 68 11 high [INTERCHROMOSOMAL[chr14--chr15]],translocation/5'-5' AL512356.1 NA TMOD2 NA NA NA NA NA NA -AL513550.1--FIG4 BS_PNYN0AYD NA -1.73204483833118 NA NA NA no change NA NA 6:99425898 6:109727109 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr6:10.26Mb]],deletion AL513550.1 NA FIG4 NA NA NA NA NA NA -AL513550.1--FIG4 BS_PNYN0AYD NA -1.73204483833118 NA NA NA no change NA NA 6:99425898 6:109732637 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr6:10.26Mb]],deletion AL513550.1 NA FIG4 NA NA NA NA NA NA -AL513550.1--FIG4 BS_R5SNFB5B NA -1.23132435407224 NA NA NA no change NA NA 6:99425898 6:109732637 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr6:10.26Mb]],deletion AL513550.1 NA FIG4 NA NA NA NA NA NA -AL513550.1--FIG4 BS_R5SNFB5B NA -1.23132435407224 NA NA NA no change NA NA 6:99425898 6:109727109 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:10.26Mb]],deletion AL513550.1 NA FIG4 NA NA NA NA NA NA -AL589647.1(49253)/AL357052.1(96906)--AL022068.1 BS_7BTZQKYY NA NA NA NA NA NA NA NA 6:19193413 6:19325798 ARRIBA other 3 0 low [],duplication AL589647.1 AL357052.1 AL022068.1 NA NA NA NA NA NA -AL589740.1--AL589740.1 BS_C51RB0YR NA NA NA NA NA NA NA NA 6:97828206 6:97742172 ARRIBA other 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:1.12Mb]],duplication AL589740.1 NA AL589740.1 NA NA NA NA NA NA -AL590132.1--AL590132.1 BS_M1T1K5WV NA NA NA NA NA NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 18 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.28Mb]],duplication/non-canonical_splicing AL590132.1 NA AL590132.1 NA NA NA NA NA NA -AL590132.1--KCNH1 BS_044XZ8ST NA 2.70715082215773 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_044XZ8ST NA 2.70715082215773 NA NA NA differentially expressed NA NA 1:211103496 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_044XZ8ST NA 2.70715082215773 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_044XZ8ST NA 2.70715082215773 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_044XZ8ST NA 2.70715082215773 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_044XZ8ST NA 2.70715082215773 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_044XZ8ST NA 2.70715082215773 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_044XZ8ST NA 2.70715082215773 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_07ANYSYQ NA 1.73628719321685 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_07ANYSYQ NA 1.73628719321685 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_07ANYSYQ NA 1.73628719321685 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_07ANYSYQ NA 1.73628719321685 NA NA NA no change NA NA 1:211103496 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_0T17SY47 NA 2.25104172243631 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 11 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_0T17SY47 NA 2.25104172243631 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_0T17SY47 NA 2.25104172243631 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_0T17SY47 NA 2.25104172243631 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_0T17SY47 NA 2.25104172243631 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 6 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_0T17SY47 NA 2.25104172243631 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_0T17SY47 NA 2.25104172243631 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_0T17SY47 NA 2.25104172243631 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_1G3WYEN3 NA 1.57401575148041 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_1G3WYEN3 NA 1.57401575148041 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_1G3WYEN3 NA 1.57401575148041 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_1G3WYEN3 NA 1.57401575148041 NA NA NA no change NA NA 1:211082780 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_1G3WYEN3 NA 1.57401575148041 NA NA NA no change NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_1T19NFJ8 NA 2.31351461601261 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 35 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_1T19NFJ8 NA 2.31351461601261 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_1T19NFJ8 NA 2.31351461601261 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 22 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_1T19NFJ8 NA 2.31351461601261 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_1T19NFJ8 NA 2.31351461601261 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_1T19NFJ8 NA 2.31351461601261 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_1T19NFJ8 NA 2.31351461601261 NA NA NA differentially expressed NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_1T19NFJ8 NA 2.31351461601261 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_258RRGDM NA 1.85236087834876 NA NA NA no change NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_258RRGDM NA 1.85236087834876 NA NA NA no change NA NA 1:211090562 1:211107377 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_258RRGDM NA 1.85236087834876 NA NA NA no change NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_258RRGDM NA 1.85236087834876 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_258RRGDM NA 1.85236087834876 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_258RRGDM NA 1.85236087834876 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_273HKCT4 NA 1.46666901488323 NA NA NA no change NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_273HKCT4 NA 1.46666901488323 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_273HKCT4 NA 1.46666901488323 NA NA NA no change NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_273HKCT4 NA 1.46666901488323 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_273HKCT4 NA 1.46666901488323 NA NA NA no change NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_273HKCT4 NA 1.46666901488323 NA NA NA no change NA NA 1:210919640 1:211063737 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_273HKCT4 NA 1.46666901488323 NA NA NA no change NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_2XD3MNKD NA 2.58159713075994 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_2XD3MNKD NA 2.58159713075994 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 11 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_2XD3MNKD NA 2.58159713075994 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_2XD3MNKD NA 2.58159713075994 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 11 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_2XD3MNKD NA 2.58159713075994 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_2XD3MNKD NA 2.58159713075994 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_2XD3MNKD NA 2.58159713075994 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_398KYV92 NA 3.63653654788377 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 24 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_398KYV92 NA 3.63653654788377 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 16 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_398KYV92 NA 3.63653654788377 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_398KYV92 NA 3.63653654788377 NA NA NA differentially expressed NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_398KYV92 NA 3.63653654788377 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_398KYV92 NA 3.63653654788377 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_398KYV92 NA 3.63653654788377 NA NA NA differentially expressed NA NA 1:211103496 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_398KYV92 NA 3.63653654788377 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_39CGACC7 NA 1.72212556182583 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 13 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_39CGACC7 NA 1.72212556182583 NA NA NA no change NA NA 1:211103496 1:211107377 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_39CGACC7 NA 1.72212556182583 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_39CGACC7 NA 1.72212556182583 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 4 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_39CGACC7 NA 1.72212556182583 NA NA NA no change NA NA 1:211090562 1:211107377 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_39CGACC7 NA 1.72212556182583 NA NA NA no change NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_39CGACC7 NA 1.72212556182583 NA NA NA no change NA NA 1:211082780 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_39CGACC7 NA 1.72212556182583 NA NA NA no change NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_3MS8WVNR NA 0.875393308752539 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_3MS8WVNR NA 0.875393308752539 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_3MS8WVNR NA 0.875393308752539 NA NA NA no change NA NA 1:211103496 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_3MS8WVNR NA 0.875393308752539 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 10 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_3MS8WVNR NA 0.875393308752539 NA NA NA no change NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_3P20Q2C3 NA 2.155859836416 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_3P20Q2C3 NA 2.155859836416 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_3P20Q2C3 NA 2.155859836416 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_3P20Q2C3 NA 2.155859836416 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_3P20Q2C3 NA 2.155859836416 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_3P20Q2C3 NA 2.155859836416 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_3P20Q2C3 NA 2.155859836416 NA NA NA differentially expressed NA NA 1:210919642 1:211019258 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_3P20Q2C3 NA 2.155859836416 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_5K3R0F5D NA 1.45845659013808 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_5K3R0F5D NA 1.45845659013808 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_5K3R0F5D NA 1.45845659013808 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_5K3R0F5D NA 1.45845659013808 NA NA NA no change NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_5K3R0F5D NA 1.45845659013808 NA NA NA no change NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_5K3R0F5D NA 1.45845659013808 NA NA NA no change NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_5K3R0F5D NA 1.45845659013808 NA NA NA no change NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_60K3EQ9S NA 1.13957961623969 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_60K3EQ9S NA 1.13957961623969 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_67Z63A2K NA 1.33936226198201 NA NA NA no change NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_67Z63A2K NA 1.33936226198201 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_680K119G NA 1.22123530658558 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_680K119G NA 1.22123530658558 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_680K119G NA 1.22123530658558 NA NA NA no change NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_680K119G NA 1.22123530658558 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_680K119G NA 1.22123530658558 NA NA NA no change NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_6MY8W3H0 NA 4.11489877258609 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 16 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_6MY8W3H0 NA 4.11489877258609 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 6 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_6MY8W3H0 NA 4.11489877258609 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_6MY8W3H0 NA 4.11489877258609 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 34 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_6MY8W3H0 NA 4.11489877258609 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_6MY8W3H0 NA 4.11489877258609 NA NA NA differentially expressed NA NA 1:211082780 1:211103602 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_6MY8W3H0 NA 4.11489877258609 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 17 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_6MY8W3H0 NA 4.11489877258609 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 5 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_6MY8W3H0 NA 4.11489877258609 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_7XRN3CFX NA 2.13054798618757 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_7XRN3CFX NA 2.13054798618757 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_7XRN3CFX NA 2.13054798618757 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_7XRN3CFX NA 2.13054798618757 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_8MA5B8Y9 NA 1.95516130844469 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_8MA5B8Y9 NA 1.95516130844469 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_8MA5B8Y9 NA 1.95516130844469 NA NA NA no change NA NA 1:210919640 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_8MA5B8Y9 NA 1.95516130844469 NA NA NA no change NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_8MA5B8Y9 NA 1.95516130844469 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_8MA5B8Y9 NA 1.95516130844469 NA NA NA no change NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_8MA5B8Y9 NA 1.95516130844469 NA NA NA no change NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_912NX4Y0 NA 3.22660645268006 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_912NX4Y0 NA 3.22660645268006 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_912NX4Y0 NA 3.22660645268006 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_912NX4Y0 NA 3.22660645268006 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_912NX4Y0 NA 3.22660645268006 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_912NX4Y0 NA 3.22660645268006 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_912NX4Y0 NA 3.22660645268006 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_912NX4Y0 NA 3.22660645268006 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_92VDQ0NE NA 2.3338658135749 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 25 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_92VDQ0NE NA 2.3338658135749 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_92VDQ0NE NA 2.3338658135749 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_92VDQ0NE NA 2.3338658135749 NA NA NA differentially expressed NA NA 1:211018864 1:211107377 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_92VDQ0NE NA 2.3338658135749 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_92VDQ0NE NA 2.3338658135749 NA NA NA differentially expressed NA NA 1:210919640 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_92VDQ0NE NA 2.3338658135749 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_92VDQ0NE NA 2.3338658135749 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 23 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_9F09XV62 NA 1.36555473307387 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_9F09XV62 NA 1.36555473307387 NA NA NA no change NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_9F09XV62 NA 1.36555473307387 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_9F09XV62 NA 1.36555473307387 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_9F09XV62 NA 1.36555473307387 NA NA NA no change NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AG4H9S3J NA 1.94576954875202 NA NA NA no change NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AG4H9S3J NA 1.94576954875202 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AG4H9S3J NA 1.94576954875202 NA NA NA no change NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AG4H9S3J NA 1.94576954875202 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AJ6X83G5 NA 4.34563609346822 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AJ6X83G5 NA 4.34563609346822 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AJ6X83G5 NA 4.34563609346822 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AJ6X83G5 NA 4.34563609346822 NA NA NA differentially expressed NA NA 1:211018864 1:211107377 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AJ6X83G5 NA 4.34563609346822 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AJ6X83G5 NA 4.34563609346822 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AJ6X83G5 NA 4.34563609346822 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AMQGM1V9 NA 2.39846041535519 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 13 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AMQGM1V9 NA 2.39846041535519 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AMQGM1V9 NA 2.39846041535519 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AMQGM1V9 NA 2.39846041535519 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AMQGM1V9 NA 2.39846041535519 NA NA NA differentially expressed NA NA 1:211103496 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AMQGM1V9 NA 2.39846041535519 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AMQGM1V9 NA 2.39846041535519 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AMQGM1V9 NA 2.39846041535519 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AWH9757B NA 2.54822849466082 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AWH9757B NA 2.54822849466082 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AWH9757B NA 2.54822849466082 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AWH9757B NA 2.54822849466082 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AWH9757B NA 2.54822849466082 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AWH9757B NA 2.54822849466082 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_AWH9757B NA 2.54822849466082 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_BKR4E30C NA 2.25897054304064 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_BKR4E30C NA 2.25897054304064 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_BKR4E30C NA 2.25897054304064 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_BKR4E30C NA 2.25897054304064 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_BKR4E30C NA 2.25897054304064 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_BKR4E30C NA 2.25897054304064 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_BKR4E30C NA 2.25897054304064 NA NA NA differentially expressed NA NA 1:211082780 1:211103602 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_C6ZZ3FY5 NA 1.17365269285413 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_C6ZZ3FY5 NA 1.17365269285413 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_C6ZZ3FY5 NA 1.17365269285413 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_C7N3J4NW NA 4.52260483756419 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_C7N3J4NW NA 4.52260483756419 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_C7N3J4NW NA 4.52260483756419 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_C7N3J4NW NA 4.52260483756419 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_C7N3J4NW NA 4.52260483756419 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_C7N3J4NW NA 4.52260483756419 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 17 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CQSAJ7BF NA 3.79598842231576 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CQSAJ7BF NA 3.79598842231576 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 10 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CQSAJ7BF NA 3.79598842231576 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CQSAJ7BF NA 3.79598842231576 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CQSAJ7BF NA 3.79598842231576 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CQSAJ7BF NA 3.79598842231576 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CQSAJ7BF NA 3.79598842231576 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CQSAJ7BF NA 3.79598842231576 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CREQ97QC NA 2.53244202934516 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 12 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CREQ97QC NA 2.53244202934516 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 18 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CREQ97QC NA 2.53244202934516 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CREQ97QC NA 2.53244202934516 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 6 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CREQ97QC NA 2.53244202934516 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CREQ97QC NA 2.53244202934516 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CREQ97QC NA 2.53244202934516 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CREQ97QC NA 2.53244202934516 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CREQ97QC NA 2.53244202934516 NA NA NA differentially expressed NA NA 1:211082780 1:211103602 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CVGFNCBJ NA 3.09734467623406 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CVGFNCBJ NA 3.09734467623406 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CVGFNCBJ NA 3.09734467623406 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CVGFNCBJ NA 3.09734467623406 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CVGFNCBJ NA 3.09734467623406 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CVGFNCBJ NA 3.09734467623406 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CZ82ANWP NA 1.64589038396749 NA NA NA no change NA NA 1:211018864 1:211019256 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CZ82ANWP NA 1.64589038396749 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 12 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CZ82ANWP NA 1.64589038396749 NA NA NA no change NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CZ82ANWP NA 1.64589038396749 NA NA NA no change NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CZ82ANWP NA 1.64589038396749 NA NA NA no change NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_CZ82ANWP NA 1.64589038396749 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DMZP9G1H NA 3.64021074302108 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DMZP9G1H NA 3.64021074302108 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 23 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DMZP9G1H NA 3.64021074302108 NA NA NA differentially expressed NA NA 1:210919640 1:211082898 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DMZP9G1H NA 3.64021074302108 NA NA NA differentially expressed NA NA 1:211082780 1:211103602 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DMZP9G1H NA 3.64021074302108 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DMZP9G1H NA 3.64021074302108 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 24 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DMZP9G1H NA 3.64021074302108 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DMZP9G1H NA 3.64021074302108 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DMZP9G1H NA 3.64021074302108 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 5 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DMZP9G1H NA 3.64021074302108 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DVCQ8XDZ NA 2.95985518736006 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 18 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DVCQ8XDZ NA 2.95985518736006 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DVCQ8XDZ NA 2.95985518736006 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DVCQ8XDZ NA 2.95985518736006 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DVCQ8XDZ NA 2.95985518736006 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DVCQ8XDZ NA 2.95985518736006 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_DVCQ8XDZ NA 2.95985518736006 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ERJAJ0KA NA 1.66800358746845 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ERJAJ0KA NA 1.66800358746845 NA NA NA no change NA NA 1:211082780 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ERJAJ0KA NA 1.66800358746845 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ERJAJ0KA NA 1.66800358746845 NA NA NA no change NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ERJAJ0KA NA 1.66800358746845 NA NA NA no change NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ERJAJ0KA NA 1.66800358746845 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ERJAJ0KA NA 1.66800358746845 NA NA NA no change NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ERJAJ0KA NA 1.66800358746845 NA NA NA no change NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_FJZPQZ2C NA 1.0998317466907 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_FJZPQZ2C NA 1.0998317466907 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_FJZPQZ2C NA 1.0998317466907 NA NA NA no change NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_FJZPQZ2C NA 1.0998317466907 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 7 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_FJZPQZ2C NA 1.0998317466907 NA NA NA no change NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_FJZPQZ2C NA 1.0998317466907 NA NA NA no change NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_FW5ECXXK NA 2.34646935425043 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 13 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_FW5ECXXK NA 2.34646935425043 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_FW5ECXXK NA 2.34646935425043 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_FW5ECXXK NA 2.34646935425043 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_FW5ECXXK NA 2.34646935425043 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_HCP5C912 NA 2.36645309200404 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_HCP5C912 NA 2.36645309200404 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_HCP5C912 NA 2.36645309200404 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 29 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_HCP5C912 NA 2.36645309200404 NA NA NA differentially expressed NA NA 1:211103496 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_HCP5C912 NA 2.36645309200404 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_HCP5C912 NA 2.36645309200404 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 28 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_HCP5C912 NA 2.36645309200404 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_HCP5C912 NA 2.36645309200404 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_HCP5C912 NA 2.36645309200404 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_HCP5C912 NA 2.36645309200404 NA NA NA differentially expressed NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_JVA2NQFF NA 2.61868128775996 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA in-frame 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_JVA2NQFF NA 2.61868128775996 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_JVA2NQFF NA 2.61868128775996 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_JVA2NQFF NA 2.61868128775996 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_JVA2NQFF NA 2.61868128775996 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_JVA2NQFF NA 2.61868128775996 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_JXNZYGCR NA 2.20543927315673 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_JXNZYGCR NA 2.20543927315673 NA NA NA differentially expressed NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_JXNZYGCR NA 2.20543927315673 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 12 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_JXNZYGCR NA 2.20543927315673 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_JXNZYGCR NA 2.20543927315673 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_JXNZYGCR NA 2.20543927315673 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_JXNZYGCR NA 2.20543927315673 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_K5802F84 NA 3.45071797026707 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_K5802F84 NA 3.45071797026707 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 10 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_K5802F84 NA 3.45071797026707 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_K5802F84 NA 3.45071797026707 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 15 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_K5802F84 NA 3.45071797026707 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 46 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_K5802F84 NA 3.45071797026707 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_K5802F84 NA 3.45071797026707 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_K5802F84 NA 3.45071797026707 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_K5802F84 NA 3.45071797026707 NA NA NA differentially expressed NA NA 1:211103496 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KPT2WPHW NA 2.98292480077658 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 13 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KPT2WPHW NA 2.98292480077658 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KPT2WPHW NA 2.98292480077658 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KPT2WPHW NA 2.98292480077658 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KPT2WPHW NA 2.98292480077658 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 27 5 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KPT2WPHW NA 2.98292480077658 NA NA NA differentially expressed NA NA 1:210919640 1:211082898 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KPT2WPHW NA 2.98292480077658 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KPT2WPHW NA 2.98292480077658 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KPT2WPHW NA 2.98292480077658 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KQ6ZW085 NA 2.88136858926657 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KQ6ZW085 NA 2.88136858926657 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KQ6ZW085 NA 2.88136858926657 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KQ6ZW085 NA 2.88136858926657 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KQ6ZW085 NA 2.88136858926657 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KX6J8TRK NA 1.29032899749049 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KX6J8TRK NA 1.29032899749049 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KX6J8TRK NA 1.29032899749049 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KX6J8TRK NA 1.29032899749049 NA NA NA no change NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_KX6J8TRK NA 1.29032899749049 NA NA NA no change NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M1PVEHCM NA 3.7516905102167 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M1PVEHCM NA 3.7516905102167 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M1PVEHCM NA 3.7516905102167 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M1PVEHCM NA 3.7516905102167 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M1PVEHCM NA 3.7516905102167 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M1PVEHCM NA 3.7516905102167 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M1T1K5WV NA 4.38810987959662 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 18 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M1T1K5WV NA 4.38810987959662 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 14 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M1T1K5WV NA 4.38810987959662 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M1T1K5WV NA 4.38810987959662 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M1T1K5WV NA 4.38810987959662 NA NA NA differentially expressed NA NA 1:211018864 1:211107377 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M1T1K5WV NA 4.38810987959662 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M1T1K5WV NA 4.38810987959662 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M1T1K5WV NA 4.38810987959662 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M4NVX721 NA 2.08174243082969 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M4NVX721 NA 2.08174243082969 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M4NVX721 NA 2.08174243082969 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 12 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M4NVX721 NA 2.08174243082969 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_M4NVX721 NA 2.08174243082969 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_MF47B9ZW NA 3.57797207955671 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_MF47B9ZW NA 3.57797207955671 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_MF47B9ZW NA 3.57797207955671 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_MF47B9ZW NA 3.57797207955671 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NT9NZYFD NA 2.65501621838205 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 26 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NT9NZYFD NA 2.65501621838205 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NT9NZYFD NA 2.65501621838205 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NT9NZYFD NA 2.65501621838205 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NT9NZYFD NA 2.65501621838205 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NT9NZYFD NA 2.65501621838205 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NT9NZYFD NA 2.65501621838205 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NVKGSMXS NA 3.80828793984113 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 12 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NVKGSMXS NA 3.80828793984113 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NVKGSMXS NA 3.80828793984113 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NVKGSMXS NA 3.80828793984113 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NVKGSMXS NA 3.80828793984113 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NYS8TRCB NA 1.32612157964562 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NYS8TRCB NA 1.32612157964562 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NYS8TRCB NA 1.32612157964562 NA NA NA no change NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NYS8TRCB NA 1.32612157964562 NA NA NA no change NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_NYS8TRCB NA 1.32612157964562 NA NA NA no change NA NA 1:210919640 1:211019256 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_PQ7CQFYR NA 3.81828899190024 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_PQ7CQFYR NA 3.81828899190024 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_PQ7CQFYR NA 3.81828899190024 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_PQ7CQFYR NA 3.81828899190024 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_PQ7CQFYR NA 3.81828899190024 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QC3XCE6X NA 2.68439756085587 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QC3XCE6X NA 2.68439756085587 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QC3XCE6X NA 2.68439756085587 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QC3XCE6X NA 2.68439756085587 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QC3XCE6X NA 2.68439756085587 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QC3XCE6X NA 2.68439756085587 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QC3XCE6X NA 2.68439756085587 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QNAQGAV6 NA 2.69891017592312 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 10 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QNAQGAV6 NA 2.69891017592312 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QNAQGAV6 NA 2.69891017592312 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QNAQGAV6 NA 2.69891017592312 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QNAQGAV6 NA 2.69891017592312 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 16 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QNAQGAV6 NA 2.69891017592312 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QV51J756 NA 2.42269956787958 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QV51J756 NA 2.42269956787958 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QV51J756 NA 2.42269956787958 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QV51J756 NA 2.42269956787958 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QV51J756 NA 2.42269956787958 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_QV51J756 NA 2.42269956787958 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_R7HZCZ8B NA 1.36988329808555 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_R7HZCZ8B NA 1.36988329808555 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_R7HZCZ8B NA 1.36988329808555 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_R7HZCZ8B NA 1.36988329808555 NA NA NA no change NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_TG93XC55 NA 4.06632583757526 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_TG93XC55 NA 4.06632583757526 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 25 7 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_TG93XC55 NA 4.06632583757526 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 13 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_TG93XC55 NA 4.06632583757526 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_TG93XC55 NA 4.06632583757526 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_TG93XC55 NA 4.06632583757526 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_TG93XC55 NA 4.06632583757526 NA NA NA differentially expressed NA NA 1:210919640 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_TG93XC55 NA 4.06632583757526 NA NA NA differentially expressed NA NA 1:211103496 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_TG93XC55 NA 4.06632583757526 NA NA NA differentially expressed NA NA 1:211082780 1:211103602 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VMMJYN8Z NA 2.63800883023558 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VMMJYN8Z NA 2.63800883023558 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VMMJYN8Z NA 2.63800883023558 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 8 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VMMJYN8Z NA 2.63800883023558 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VMMJYN8Z NA 2.63800883023558 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VMMJYN8Z NA 2.63800883023558 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 18 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VMMJYN8Z NA 2.63800883023558 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VNE0ZPBS NA 3.56526165284459 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VNE0ZPBS NA 3.56526165284459 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VNE0ZPBS NA 3.56526165284459 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VNE0ZPBS NA 3.56526165284459 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 17 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VNE0ZPBS NA 3.56526165284459 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VNE0ZPBS NA 3.56526165284459 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VNE0ZPBS NA 3.56526165284459 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VPMKHW9X NA 3.9944346318268 NA NA NA differentially expressed NA NA 1:210919640 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VPMKHW9X NA 3.9944346318268 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 14 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VPMKHW9X NA 3.9944346318268 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VPMKHW9X NA 3.9944346318268 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VPMKHW9X NA 3.9944346318268 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VPMKHW9X NA 3.9944346318268 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VPMKHW9X NA 3.9944346318268 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VPMKHW9X NA 3.9944346318268 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VPMKHW9X NA 3.9944346318268 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VPMKHW9X NA 3.9944346318268 NA NA NA differentially expressed NA NA 1:211082780 1:211103602 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VTJ9ESSV NA 2.53696660505022 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VTJ9ESSV NA 2.53696660505022 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VTJ9ESSV NA 2.53696660505022 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VTJ9ESSV NA 2.53696660505022 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_VTJ9ESSV NA 2.53696660505022 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_W18SF91A NA 1.61597671485542 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_W18SF91A NA 1.61597671485542 NA NA NA no change NA NA 1:211018864 1:211019256 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_W18SF91A NA 1.61597671485542 NA NA NA no change NA NA 1:211082780 1:211090690 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_W18SF91A NA 1.61597671485542 NA NA NA no change NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_W18SF91A NA 1.61597671485542 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_W18SF91A NA 1.61597671485542 NA NA NA no change NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WCRKYV0T NA 4.09600660418697 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 13 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WCRKYV0T NA 4.09600660418697 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 6 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WCRKYV0T NA 4.09600660418697 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WCRKYV0T NA 4.09600660418697 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WCRKYV0T NA 4.09600660418697 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WCRKYV0T NA 4.09600660418697 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 18 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WCRKYV0T NA 4.09600660418697 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WCRKYV0T NA 4.09600660418697 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WCRKYV0T NA 4.09600660418697 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 51 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WGK8ZMVA NA 0.942426579237604 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WGK8ZMVA NA 0.942426579237604 NA NA NA no change NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WGK8ZMVA NA 0.942426579237604 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WYG77VVP NA 2.76380173850783 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WYG77VVP NA 2.76380173850783 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WYG77VVP NA 2.76380173850783 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 8 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WYG77VVP NA 2.76380173850783 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WYG77VVP NA 2.76380173850783 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_WYG77VVP NA 2.76380173850783 NA NA NA differentially expressed NA NA 1:211082780 1:211103602 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YB2RXRHT NA 3.25714229475116 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YB2RXRHT NA 3.25714229475116 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YB2RXRHT NA 3.25714229475116 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YB2RXRHT NA 3.25714229475116 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YB2RXRHT NA 3.25714229475116 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YB2RXRHT NA 3.25714229475116 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 22 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YB2RXRHT NA 3.25714229475116 NA NA NA differentially expressed NA NA 1:210919640 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YMAJC22S NA 2.60350383149347 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 15 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YMAJC22S NA 2.60350383149347 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YMAJC22S NA 2.60350383149347 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YMAJC22S NA 2.60350383149347 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YMAJC22S NA 2.60350383149347 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YMAJC22S NA 2.60350383149347 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YMAJC22S NA 2.60350383149347 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YNEQJ6AH NA 1.87535594092743 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YNEQJ6AH NA 1.87535594092743 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YNEQJ6AH NA 1.87535594092743 NA NA NA no change NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_YNEQJ6AH NA 1.87535594092743 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_Z2NWPQKF NA 2.02558036552263 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_Z2NWPQKF NA 2.02558036552263 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_Z2NWPQKF NA 2.02558036552263 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_Z2NWPQKF NA 2.02558036552263 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_Z2NWPQKF NA 2.02558036552263 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZH1FBX50 NA 4.14287006567823 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 26 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZH1FBX50 NA 4.14287006567823 NA NA NA differentially expressed NA NA 1:211103496 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZH1FBX50 NA 4.14287006567823 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 20 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZH1FBX50 NA 4.14287006567823 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZH1FBX50 NA 4.14287006567823 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZH1FBX50 NA 4.14287006567823 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZH1FBX50 NA 4.14287006567823 NA NA NA differentially expressed NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZH1FBX50 NA 4.14287006567823 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZH1FBX50 NA 4.14287006567823 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZH1FBX50 NA 4.14287006567823 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZR96A4FH NA 3.30347144946073 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 10 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZR96A4FH NA 3.30347144946073 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 9 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZR96A4FH NA 3.30347144946073 NA NA NA differentially expressed NA NA 1:210919640 1:211090690 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZR96A4FH NA 3.30347144946073 NA NA NA differentially expressed NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZR96A4FH NA 3.30347144946073 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZR96A4FH NA 3.30347144946073 NA NA NA differentially expressed NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZR96A4FH NA 3.30347144946073 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 24 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZR96A4FH NA 3.30347144946073 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 31 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZR96A4FH NA 3.30347144946073 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZXYDSBM9 NA 3.36154002506614 NA NA NA differentially expressed NA NA 1:210919640 1:210920069 ARRIBA frameshift 11 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZXYDSBM9 NA 3.36154002506614 NA NA NA differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 12 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZXYDSBM9 NA 3.36154002506614 NA NA NA differentially expressed NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZXYDSBM9 NA 3.36154002506614 NA NA NA differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZXYDSBM9 NA 3.36154002506614 NA NA NA differentially expressed NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZXYDSBM9 NA 3.36154002506614 NA NA NA differentially expressed NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZXYDSBM9 NA 3.36154002506614 NA NA NA differentially expressed NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZZPBANDD NA 1.8257156814599 NA NA NA no change NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZZPBANDD NA 1.8257156814599 NA NA NA no change NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZZPBANDD NA 1.8257156814599 NA NA NA no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZZPBANDD NA 1.8257156814599 NA NA NA no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZZPBANDD NA 1.8257156814599 NA NA NA no change NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZZPBANDD NA 1.8257156814599 NA NA NA no change NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590132.1--KCNH1 BS_ZZPBANDD NA 1.8257156814599 NA NA NA no change NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA -AL590385.2--BCAN BS_KE56MMY0 NA -2.22211720422719 NA NA NA differentially expressed NA NA 1:161513708 1:156647113 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr1:4.85Mb]],duplication AL590385.2 NA BCAN NA NA NA NA NA NA -AL590824.1(410045)/FAM46A(524205)--AC090283.1 BS_TJTEF70D NA NA 2.08006054222804 NA NA NA differentially expressed NA 6:80967234 17:40809271 ARRIBA other 6 0 medium [],translocation AL590824.1 FAM46A AC090283.1 NA NA NA NA NA NA -AL591684.2--PTPN20 BS_E4F1D721 NA 2.44655886404515 NA NA NA differentially expressed NA NA 10:47542167 10:46940623 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr10:0.52Mb]],inversion AL591684.2 NA PTPN20 NA NA NA NA NA NA -AL591684.2--PTPN20 BS_E4F1D721 NA 2.44655886404515 NA NA NA differentially expressed NA NA 10:47542167 10:46964986 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.52Mb]],inversion AL591684.2 NA PTPN20 NA NA NA NA NA NA -AL591684.2--PTPN20 BS_KDSTG5YY NA 1.10461092815778 NA NA NA no change NA NA 10:47542167 10:46940582 ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr10:0.52Mb]],inversion AL591684.2 NA PTPN20 NA NA NA NA NA NA -AL591684.2--PTPN20 BS_N6NE6B3W NA 2.86736203015877 NA NA NA differentially expressed NA NA 10:47542167 10:46940623 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr10:0.52Mb]],inversion AL591684.2 NA PTPN20 NA NA NA NA NA NA -AL591684.2--PTPN20 BS_X67GTEM6 NA 1.65021859638648 NA NA NA no change NA NA 10:47542167 10:46943918 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr10:0.52Mb]],inversion AL591684.2 NA PTPN20 NA NA NA NA NA NA -AL591684.2--PTPN20 BS_X67GTEM6 NA 1.65021859638648 NA NA NA no change NA NA 10:47542167 10:46940623 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.52Mb]],inversion AL591684.2 NA PTPN20 NA NA NA NA NA NA -AL592463.1(640)/MUSK(62912)--AL592463.1 BS_77317DY4 NA NA -0.529939745354497 NA NA NA no change NA 9:110605859 9:110604418 ARRIBA other 5 0 medium [],duplication AL592463.1 MUSK AL592463.1 NA NA NA Kinase, Kinase NA NA -AL606763.1--AL606763.1(69913)/Z69733.1(19311) BS_4B0BAVTX NA NA NA NA NA NA NA NA X:103408299 X:103478212 ARRIBA other 8 0 medium [],inversion AL606763.1 NA AL606763.1 Z69733.1 NA NA NA NA NA -AL606763.1(53219)/Z69733.1(36005)--RAB40A BS_7BTZQKYY NA -1.10446535331712 NA NA NA no change NA NA X:103461518 X:103517525 ARRIBA other 3 0 high [],duplication AL606763.1 Z69733.1 RAB40A NA NA NA NA NA NA -AL627309.5(7175)/FO538757.2(1659)--ABCA8 BS_TGS109T3 NA -1.52726689556859 -5.45127489784963 NA NA no change differentially expressed NA 1:181037 17:68917396 ARRIBA other 3 0 low [],translocation AL627309.5 FO538757.2 ABCA8 NA NA NA NA NA NA -AL627309.5(7175)/FO538757.2(1659)--IFT52 BS_QWTE1CWR NA 0.563296398061932 -5.39652404025912 NA NA no change differentially expressed NA 1:181037 20:43618940 ARRIBA other 28 0 medium [],translocation AL627309.5 FO538757.2 IFT52 NA NA NA NA NA NA -AL627309.5(7175)/FO538757.2(1659)--IFT52 BS_WKESC3XN NA 0.306462911323633 -5.45127489784963 NA NA no change differentially expressed NA 1:181037 20:43618940 ARRIBA other 11 0 high [],translocation AL627309.5 FO538757.2 IFT52 NA NA NA NA NA NA -AL627309.5(7175)/FO538757.2(1659)--MUC17 BS_W36RZSFA NA 31.5156684241904 -4.76303918390503 NA NA differentially expressed differentially expressed NA 1:181037 7:101031120 ARRIBA other 3 0 medium [],translocation AL627309.5 FO538757.2 MUC17 NA NA Oncogene NA NA NA -AL691442.1--RELA(2327)/RN7SL309P(30131) BS_CZ3ER8DY NA 4.03965363581365 NA 4.74482062883432 NA differentially expressed NA differentially expressed 1:155063936 11:65665421 ARRIBA frameshift 3 2 high [],translocation AL691442.1 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA -AL807742.1--RIMBP2 BS_DY88N5ZT NA 3.31382455852018 NA NA NA differentially expressed NA NA X:20839997 12:130506769 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chrX--chr12]],translocation AL807742.1 NA RIMBP2 NA NA NA NA NA NA -AL807742.1--RIMBP2 BS_ZH1FBX50 NA 2.27633319682002 NA NA NA differentially expressed NA NA X:20839996 12:130517915 ARRIBA other 4 0 low [INTERCHROMOSOMAL[chrX--chr12]],translocation AL807742.1 NA RIMBP2 NA NA NA NA NA NA -AL807752.7--P2RX5 BS_J60G8DMK NA 1.96919338820163 NA NA NA no change NA NA 9:136977692 17:3685580 ARRIBA frameshift 3 0 low [INTERCHROMOSOMAL[chr9--chr17]],translocation AL807752.7 NA P2RX5 NA NA NA NA NA NA -AL845472.1--CR786580.1(3419)/DUX4L50(170) BS_VJ2S5DVS NA NA NA -2.26423198227211 NA NA NA differentially expressed 9:41272915 9:63817578 ARRIBA other 1 1 medium [],inversion AL845472.1 NA CR786580.1 DUX4L50 NA NA NA NA NA -ALCAM--P4HTM BS_FAQQ0GCQ 0.100911039567508 -1.23506382568956 NA NA no change no change NA NA 3:105367481 3:49001438 ARRIBA in-frame 10 0 high [INTRACHROMOSOMAL[chr3:56.36Mb]],duplication ALCAM NA P4HTM NA NA NA NA NA NA -ALDH1A3--TARSL2 BS_H0QWRJE2 -1.84111073669038 3.05182618195255 NA NA no change differentially expressed NA NA 15:100905687 15:101666749 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr15:0.74Mb]],deletion/5'-5' ALDH1A3 NA TARSL2 NA NA NA NA NA NA -ALDH1A3--TARSL2 BS_TJTEF70D -1.61247054438512 2.14188055572536 NA NA no change differentially expressed NA NA 15:100905687 15:101666749 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr15:0.74Mb]],deletion/5'-5' ALDH1A3 NA TARSL2 NA NA NA NA NA NA -ALDH7A1--SMARCC1 BS_JFEZA9KE 1.49529118853696 8.76930229756403 NA NA no change differentially expressed NA NA 5:126595007 3:47675588 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr5--chr3]],translocation ALDH7A1 NA SMARCC1 NA NA TumorSuppressorGene NA NA NA -ALDOA--APC2 BS_RXN5T5YT 0.72936134360482 3.2728876310085 NA NA no change differentially expressed NA NA 16:30068976 19:1455386 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr16--chr19]],translocation ALDOA NA APC2 NA NA Oncogene NA NA NA -ALG1--AL590999.1 BS_N5B2CZMH 0.527160136533873 NA NA NA no change NA NA NA 16:5078016 6:39882235 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr16--chr6]],translocation/5'-5' ALG1 NA AL590999.1 NA NA NA NA NA NA -ALK--CLIP4 BS_ZV68CES9 -0.222382113157479 2.08560151039334 NA NA no change differentially expressed NA NA 2:29197036 2:29121374 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_INVERSION:-:+:[3131]],duplication/3'-3' ALK NA CLIP4 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -ALK--PPP1CB BS_PQ6QEVE8 9.94101182353293 2.44874556428233 NA NA differentially expressed differentially expressed NA NA 2:29694850 2:28799199 ARRIBA frameshift 291 33 high [INTRACHROMOSOMAL[chr2:0.39Mb]],inversion ALK NA PPP1CB NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -ALK--PPP1CB BS_PQ6QEVE8 9.94101182353293 2.44874556428233 NA NA differentially expressed differentially expressed NA NA 2:29717578 2:28799199 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr2:0.39Mb]],inversion ALK NA PPP1CB NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -ALK--PPP1CB BS_ZZWMD6FA 7.31193792330893 2.92816423753225 NA NA differentially expressed differentially expressed NA NA 2:29694850 2:28799199 ARRIBA frameshift 84 18 high [INTRACHROMOSOMAL[chr2:0.39Mb]],inversion ALK NA PPP1CB NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -ALK--SPDYA BS_PQ6QEVE8 9.94101182353293 -1.06033774924285 NA NA differentially expressed no change NA NA 2:29694850 2:28799199 ARRIBA frameshift 140 0 medium [INTRACHROMOSOMAL[chr2:0.34Mb]],inversion ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -ALK--SPDYA BS_PQ6QEVE8 9.94101182353293 -1.06033774924285 NA NA differentially expressed no change NA NA 2:29694850 2:28840172 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr2:0.34Mb]],inversion ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -ALK--SPDYA BS_ZZWMD6FA 7.31193792330893 -1.38853393296424 NA NA differentially expressed no change NA NA 2:29694850 2:28799199 ARRIBA frameshift 34 0 medium [INTRACHROMOSOMAL[chr2:0.34Mb]],inversion ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -ALK--SPDYA BS_ZZWMD6FA 7.31193792330893 -1.38853393296424 NA NA differentially expressed no change NA NA 2:29694850 2:28814613 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.34Mb]],inversion ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -ALK--SPDYA BS_ZZWMD6FA 7.31193792330893 -1.38853393296424 NA NA differentially expressed no change NA NA 2:29694850 2:28840172 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.34Mb]],inversion ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -ALKBH1--KIF26B BS_D2K9C7XR -0.0135580634898495 5.65687167673898 NA NA no change differentially expressed NA NA 14:77704369 1:245235423 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr14--chr1]],translocation/5'-5' ALKBH1 NA KIF26B NA NA NA NA NA NA -ALKBH1--WARS2P1(143089)/RPA2P2(52250) BS_9CA93S6D -0.197384351165347 6.06750657084282 NA -0.076860886114321 no change differentially expressed NA no change 14:77694738 10:81084290 ARRIBA frameshift 4 0 high [],translocation ALKBH1 NA WARS2P1 RPA2P2 NA NA NA NA NA -ALKBH5--MAP4 BS_KZPR01BD 1.24917277238146 0.575491259564807 NA NA no change no change NA NA 17:18195019 3:47880169 ARRIBA frameshift 10 1 medium [INTERCHROMOSOMAL[chr17--chr3]],translocation ALKBH5 NA MAP4 NA NA Oncogene NA NA NA -ALOX12-AS1--GLUD2(113979)/HSPA8P1(39123) BS_9NJHQE9F -0.0766688125322585 3.75941960452345 NA 6.6058865555087 no change differentially expressed NA differentially expressed 17:6926161 X:121164059 ARRIBA other 3 0 medium [],translocation ALOX12-AS1 NA GLUD2 HSPA8P1 NA NA NA NA NA -ALOX12P2--ALOX12P2 BS_AGS1HHGF 2.74918976595277 2.74918976595277 NA NA differentially expressed differentially expressed NA NA 17:6892075 17:6855235 ARRIBA other 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr17:0.10Mb]],duplication ALOX12P2 NA ALOX12P2 NA NA NA NA NA NA -ALOX12P2--ALOX12P2 BS_KZPR01BD 0.429210798621545 0.429210798621545 NA NA no change no change NA NA 17:6899985 17:6892003 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.10Mb]],duplication/non-canonical_splicing ALOX12P2 NA ALOX12P2 NA NA NA NA NA NA -ALOX12P2--ALOX12P2 BS_QV51J756 2.129110640753 2.129110640753 NA NA differentially expressed differentially expressed NA NA 17:6899985 17:6892003 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.10Mb]],duplication/non-canonical_splicing ALOX12P2 NA ALOX12P2 NA NA NA NA NA NA -ALS2--WDPCP BS_RRAEQZ97 0.32976459685214 1.34461006228155 NA NA no change no change NA NA 2:201725415 2:63732443 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:137.87Mb]],inversion/5'-5' ALS2 NA WDPCP NA NA NA NA NA NA -ALS2CR12--ALS2CR12(5288)/TRAK2(14521) BS_09R7GDA7 0.857992057370327 0.857992057370327 NA -0.0453140770735679 no change no change NA no change 2:201299238 2:201362686 ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA -ALS2CR12--ALS2CR12(5288)/TRAK2(14521) BS_2SFTWNVE 0.139452948018195 0.139452948018195 NA 0.681776611355116 no change no change NA no change 2:201330470 2:201362686 ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA -ALS2CR12--ALS2CR12(5288)/TRAK2(14521) BS_39CGACC7 0.904861987606062 0.904861987606062 NA 0.563780731609543 no change no change NA no change 2:201344170 2:201362686 ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA -ALS2CR12--ALS2CR12(5288)/TRAK2(14521) BS_NKRYMHEP 0.385054798482367 0.385054798482367 NA 0.330394665091704 no change no change NA no change 2:201330470 2:201362686 ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA -ALS2CR12--ALS2CR12(6775)/TRAK2(13034) BS_9V633J1X 5.0357752994071 5.0357752994071 NA 1.09008581728348 differentially expressed differentially expressed NA no change 2:201342370 2:201364173 ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA -ALS2CR12--ALS2CR12(6778)/TRAK2(13031) BS_09Z7TC35 5.61732765778146 5.61732765778146 NA 2.48676291727952 differentially expressed differentially expressed NA differentially expressed 2:201307519 2:201364176 ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA -ALS2CR12--ALS2CR12(6778)/TRAK2(13031) BS_61E80SD6 4.00587982243667 4.00587982243667 NA 1.21032711866488 differentially expressed differentially expressed NA no change 2:201299238 2:201364176 ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA -ALS2CR12--ALS2CR12(6778)/TRAK2(13031) BS_6T4JGBGY 4.48880533290734 4.48880533290734 NA 1.3768007342013 differentially expressed differentially expressed NA no change 2:201307519 2:201364176 ARRIBA frameshift 1 5 high [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA -ALS2CR12--ALS2CR12(6778)/TRAK2(13031) BS_GCQFGDTX 4.7718012131559 4.7718012131559 NA 3.04686755723584 differentially expressed differentially expressed NA differentially expressed 2:201307519 2:201364176 ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA -ALS2CR12--ALS2CR12(6778)/TRAK2(13031) BS_VA5T4KAA 3.26032457159327 3.26032457159327 NA 1.33695847805916 differentially expressed differentially expressed NA no change 2:201307519 2:201364176 ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA -ALS2CR12--ALS2CR12(6778)/TRAK2(13031) BS_ZV68CES9 3.75560536614893 3.75560536614893 NA 1.85626582460608 differentially expressed differentially expressed NA no change 2:201299238 2:201364176 ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA -ALX4--CDC42EP2 BS_3DCBDJAT 23.1728763015302 2.73731763573746 NA NA differentially expressed differentially expressed NA NA 11:44309597 11:65320544 ARRIBA frameshift 57 3 high [INTRACHROMOSOMAL[chr11:21.00Mb]],inversion ALX4 NA CDC42EP2 NA TranscriptionFactor NA NA NA NA -ALYREF--PTPRZ1 BS_X91K8KMG 2.17137557639692 4.26414014032385 NA NA differentially expressed differentially expressed NA NA 17:81888520 7:122010332 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr17--chr7]],translocation ALYREF NA PTPRZ1 NA NA NA NA NA NA -AMBRA1--AC024405.1(10037)/OR4C50P(4159127) BS_SXCZ3CXN 1.43563942121672 NA NA -0.0678142842492893 no change NA NA no change 11:46493608 11:50432353 ARRIBA frameshift 9 0 high [],duplication AMBRA1 NA AC024405.1 OR4C50P NA NA NA NA NA -AMBRA1--AC024405.1(72208)/OR4C50P(4096956) BS_SXCZ3CXN 1.43563942121672 NA NA -0.0678142842492893 no change NA NA no change 11:46493608 11:50494524 ARRIBA frameshift 1 2 high [],duplication AMBRA1 NA AC024405.1 OR4C50P NA NA NA NA NA -AMBRA1--AC104042.1(11647)/SNORA31(992611) BS_MN5XVP5A 1.9441121509904 NA NA 5.26407363108577 no change NA NA differentially expressed 11:46493608 11:36709514 ARRIBA frameshift 3 0 high [],inversion AMBRA1 NA AC104042.1 SNORA31 NA NA NA NA NA -AMBRA1--AKAP6 BS_6JHXXVR7 2.37347546669254 0.881541643733278 NA NA differentially expressed no change NA NA 11:46493608 14:32535554 ARRIBA frameshift 11 1 high [INTERCHROMOSOMAL[chr11--chr14]],translocation AMBRA1 NA AKAP6 NA NA NA NA NA NA -AMBRA1--AKAP6 BS_6JHXXVR7 2.37347546669254 0.881541643733278 NA NA differentially expressed no change NA NA 11:46493608 14:32487812 ARRIBA frameshift 10 2 high [INTERCHROMOSOMAL[chr11--chr14]],translocation AMBRA1 NA AKAP6 NA NA NA NA NA NA -AMBRA1--MRM3 BS_MN5XVP5A 1.9441121509904 NA NA NA no change NA NA NA 11:46593828 17:787965 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr11--chr17]],translocation AMBRA1 NA MRM3 NA NA NA NA NA NA -AMBRA1--MRM3 BS_MN5XVP5A 1.9441121509904 NA NA NA no change NA NA NA 11:46593828 17:791534 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr11--chr17]],translocation AMBRA1 NA MRM3 NA NA NA NA NA NA -AMBRA1--MRM3 BS_RCCN63K6 1.66256745932569 NA NA NA no change NA NA NA 11:46593828 17:787965 ARRIBA other 6 0 high [INTERCHROMOSOMAL[chr11--chr17]],translocation AMBRA1 NA MRM3 NA NA NA NA NA NA -AMBRA1--MRM3 BS_RCCN63K6 1.66256745932569 NA NA NA no change NA NA NA 11:46593828 17:791534 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr11--chr17]],translocation AMBRA1 NA MRM3 NA NA NA NA NA NA -AMDHD1--UBE2Q2P1 BS_044XZ8ST -0.932164238255755 3.63723227522679 NA NA no change differentially expressed NA NA 12:95947437 15:84546277 ARRIBA other 4 0 high [INTERCHROMOSOMAL[chr12--chr15]],translocation AMDHD1 NA UBE2Q2P1 NA NA NA NA NA NA -AMOTL1--AP002001.2(194737)/GUCY1A2(167484) BS_3DCBDJAT 5.34484310769404 NA NA -0.719839821455339 differentially expressed NA NA no change 11:94859715 11:106506528 ARRIBA frameshift 16 2 high [],inversion AMOTL1 NA AP002001.2 GUCY1A2 NA NA NA Oncogene NA -AMOTL1--AP002001.2(233284)/GUCY1A2(128937) BS_3DCBDJAT 5.34484310769404 NA NA -0.719839821455339 differentially expressed NA NA no change 11:94859871 11:106545075 ARRIBA frameshift 2 0 low [],inversion AMOTL1 NA AP002001.2 GUCY1A2 NA NA NA Oncogene NA -AMPD3--OSBPL5 BS_6JHXXVR7 0.282932725176587 3.20830126812922 NA NA no change differentially expressed NA NA 11:10478730 11:3166289 ARRIBA frameshift 34 0 high [INTRACHROMOSOMAL[chr11:7.14Mb]],duplication/5'-5' AMPD3 NA OSBPL5 NA NA NA NA NA NA -AMPD3--OSBPL5 BS_KE56MMY0 0.513037737344214 2.92347373193833 NA NA no change differentially expressed NA NA 11:10478730 11:3166289 ARRIBA frameshift 10 0 medium [INTRACHROMOSOMAL[chr11:7.14Mb]],duplication/5'-5' AMPD3 NA OSBPL5 NA NA NA NA NA NA -AMPH--AMPH BS_2XD3MNKD -0.776415554822178 -0.776415554822178 NA NA no change no change NA NA 7:38432189 7:38461411 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.25Mb]],duplication/non-canonical_splicing AMPH NA AMPH NA NA NA NA NA NA -ANK2--CAMK2D BS_WRQHPSXQ 1.12928443333391 2.84357983371512 NA NA no change differentially expressed NA NA 4:113353556 4:113517657 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.07Mb],LOCAL_INVERSION:+:-:[67292]],duplication/3'-3' ANK2 NA CAMK2D NA NA Kinase, Oncogene, Kinase NA NA NA -ANK2--OTOL1(223998)/AC131211.1(88969) BS_C6ZZ3FY5 2.09985802186924 -0.397933427393202 NA NA differentially expressed no change NA NA 4:113374946 3:161727940 ARRIBA other 9 2 high [],translocation ANK2 NA OTOL1 AC131211.1 NA NA NA NA NA -ANKAR--ASNSD1 BS_23QW0BBA 2.24521774530458 0.616684801384592 NA NA differentially expressed no change NA NA 2:189689964 2:189665376 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[3459]],duplication ANKAR NA ASNSD1 NA NA NA NA NA NA -ANKAR--ASNSD1 BS_9M5XJ10G 4.5591294897661 1.01302389284092 NA NA differentially expressed no change NA NA 2:189689964 2:189665376 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[3459]],duplication ANKAR NA ASNSD1 NA NA NA NA NA NA -ANKAR--ASNSD1 BS_H4B5Y6S0 3.41988039012658 1.43232765260082 NA NA differentially expressed no change NA NA 2:189689964 2:189665376 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[3459]],duplication ANKAR NA ASNSD1 NA NA NA NA NA NA -ANKFN1--ANKFN1 BS_49BQS7Z6 7.97207642561624 7.97207642561624 NA NA differentially expressed differentially expressed NA NA 17:56374714 17:56326221 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.63Mb]],duplication/non-canonical_splicing ANKFN1 NA ANKFN1 NA NA NA NA NA NA -ANKFN1--ANKFN1 BS_R7HZCZ8B 5.36199317897724 5.36199317897724 NA NA differentially expressed differentially expressed NA NA 17:56374714 17:56326221 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.63Mb]],duplication/non-canonical_splicing ANKFN1 NA ANKFN1 NA NA NA NA NA NA -ANKH--FOS BS_9XWJ88Q1 5.20305884039585 1.68842694380057 NA NA differentially expressed no change NA NA 5:14871352 14:75278803 ARRIBA in-frame 41 4 high [INTERCHROMOSOMAL[chr5--chr14]],translocation ANKH NA FOS NA NA Oncogene, TranscriptionFactor NA NA NA -ANKHD1--AC113378.1(28284)/LINC02229(156316) BS_H4B5Y6S0 -0.184645733852403 NA NA NA no change NA NA NA 5:140464776 5:66351228 ARRIBA frameshift 3 1 high [],inversion ANKHD1 NA AC113378.1 LINC02229 NA NA NA NA NA -ANKHD1--CYSTM1 BS_7H4RFCW9 1.5192244611498 -1.45483505908307 NA NA no change no change NA NA 5:140402273 5:140243305 ARRIBA frameshift 2 0 low [CCLE,FA_CancerSupp,INTRACHROMOSOMAL[chr5:0.12Mb]],duplication ANKHD1 NA CYSTM1 NA NA NA NA NA NA -ANKHD1-EIF4EBP3--AC113378.1(28284)/LINC02229(156316) BS_H4B5Y6S0 -1.1334458852723 NA NA NA no change NA NA NA 5:140464776 5:66351228 ARRIBA frameshift 3 1 high [],inversion ANKHD1-EIF4EBP3 NA AC113378.1 LINC02229 NA NA NA NA NA -ANKHD1-EIF4EBP3--CYSTM1 BS_7H4RFCW9 1.61021844848886 -1.45483505908307 NA NA no change no change NA NA 5:140402273 5:140243305 ARRIBA frameshift 2 0 low [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr5:0.12Mb]],duplication ANKHD1-EIF4EBP3 NA CYSTM1 NA NA NA NA NA NA -ANKLE2--RDX BS_FW5ECXXK 0.629962418773544 1.58931156531557 NA NA no change no change NA NA 12:132735092 11:110204158 ARRIBA other 8 2 medium [INTERCHROMOSOMAL[chr12--chr11]],translocation/5'-5' ANKLE2 NA RDX NA NA NA NA NA NA -ANKRD13D--GRK2 BS_SFRQXM76 -0.667612944939744 NA NA NA no change NA NA NA 11:67290446 11:67277272 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:+:[1991]],duplication ANKRD13D NA GRK2 NA NA Kinase NA NA NA -ANKRD17--THAP12P9(14743)/AC108043.1(73566) BS_TGS109T3 3.60861785046008 NA NA NA differentially expressed NA NA NA 4:73085249 4:45340771 ARRIBA frameshift 26 0 high [],deletion ANKRD17 NA THAP12P9 AC108043.1 NA NA NA NA NA -ANKRD26--ANKRD26 BS_EK5PCKY0 3.14922812683063 3.14922812683063 NA NA differentially expressed differentially expressed NA NA 10:27034796 10:27044190 ARRIBA frameshift 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr10:0.11Mb]],duplication/non-canonical_splicing ANKRD26 NA ANKRD26 NA NA NA NA NA NA -ANKRD30B--ANKRD30B BS_7G42J2SK 1.29613141239616 1.29613141239616 NA NA no change no change NA NA 18:14791491 18:14757815 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.12Mb]],duplication/non-canonical_splicing ANKRD30B NA ANKRD30B NA NA NA NA NA NA -ANKRD36--ANKRD36 BS_7G42J2SK 2.44541163157436 2.44541163157436 NA NA differentially expressed differentially expressed NA NA 2:97224879 2:97167577 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.15Mb]],duplication/non-canonical_splicing ANKRD36 NA ANKRD36 NA NA NA NA NA NA -ANKRD36--ANKRD36 BS_W80TJC27 0.725958924157518 0.725958924157518 NA NA no change no change NA NA 2:97224879 2:97167577 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.15Mb]],duplication/non-canonical_splicing ANKRD36 NA ANKRD36 NA NA NA NA NA NA -ANKRD36C--ANKRD36C BS_7G42J2SK 2.79908722302913 2.79908722302913 NA NA differentially expressed differentially expressed NA NA 2:95853709 2:95935644 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.15Mb]],duplication/non-canonical_splicing ANKRD36C NA ANKRD36C NA NA NA NA NA NA -ANKRD52--PRKG1 BS_A0DYVX9J 3.25538171204634 -0.804067503575517 NA NA differentially expressed no change NA NA 12:56252015 10:51984967 ARRIBA frameshift 20 4 high [INTERCHROMOSOMAL[chr12--chr10]],translocation/5'-5' ANKRD52 NA PRKG1 NA NA Kinase NA NA NA -ANKRD55--ANKRD55 BS_DSS3S5XD 3.79432172902066 3.79432172902066 NA NA differentially expressed differentially expressed NA NA 5:56111118 5:56116782 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.13Mb]],duplication/non-canonical_splicing ANKRD55 NA ANKRD55 NA NA NA NA NA NA -ANKRD62P1-PARP4P3--AC005301.1 BS_7C40TRCY 17.6284847671899 NA NA NA differentially expressed NA NA NA 22:16669462 22:16679493 ARRIBA other 8 0 high [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[476]],duplication ANKRD62P1-PARP4P3 NA AC005301.1 NA NA NA NA NA NA -ANKRD62P1-PARP4P3--AC005301.1 BS_7C40TRCY 17.6284847671899 NA NA NA differentially expressed NA NA NA 22:16675123 22:16677376 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[476]],duplication ANKRD62P1-PARP4P3 NA AC005301.1 NA NA NA NA NA NA -ANKRD62P1-PARP4P3--AC005301.1 BS_7XQRH69M 12.7268031792179 NA NA NA differentially expressed NA NA NA 22:16669462 22:16679493 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[476]],duplication ANKRD62P1-PARP4P3 NA AC005301.1 NA NA NA NA NA NA -ANKRD62P1-PARP4P3--AC005301.1 BS_GCQFGDTX 13.7261581915166 NA NA NA differentially expressed NA NA NA 22:16669462 22:16679493 ARRIBA other 4 1 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[476]],duplication ANKRD62P1-PARP4P3 NA AC005301.1 NA NA NA NA NA NA -ANKRD62P1-PARP4P3--AC005301.1 BS_M86ECPHK 12.8198752394783 NA NA NA differentially expressed NA NA NA 22:16669462 22:16679493 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[476]],duplication ANKRD62P1-PARP4P3 NA AC005301.1 NA NA NA NA NA NA -ANKRD62P1-PARP4P3--AC005301.1 BS_VA5T4KAA 15.8177761129757 NA NA NA differentially expressed NA NA NA 22:16669462 22:16679493 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[476]],duplication ANKRD62P1-PARP4P3 NA AC005301.1 NA NA NA NA NA NA -ANKRD7--ANKRD7 BS_4W68NV3M 4.9751122701576 4.9751122701576 NA NA differentially expressed differentially expressed NA NA 7:118324575 7:118264813 ARRIBA other 17 2 high [SELFIE,INTRACHROMOSOMAL[chr7:0.28Mb]],inversion/3'-3' ANKRD7 NA ANKRD7 NA NA NA NA NA NA -ANO10--BTD BS_FAQQ0GCQ 0.883102225346517 2.14854760738214 NA NA no change differentially expressed NA NA 3:43565653 3:15630187 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr3:27.71Mb]],deletion/5'-5' ANO10 NA BTD NA NA NA NA NA NA -ANO10--NUP210 BS_81SP2HX4 -1.05763177644198 0.502601736225404 NA NA no change no change NA NA 3:43605714 3:13366091 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr3:29.93Mb]],deletion ANO10 NA NUP210 NA NA NA NA NA NA -ANO10--NUP210 BS_81SP2HX4 -1.05763177644198 0.502601736225404 NA NA no change no change NA NA 3:43605714 3:13360491 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:29.93Mb]],deletion ANO10 NA NUP210 NA NA NA NA NA NA -ANO10--PXK BS_S6S7SK3P 0.471325567278553 -0.438144001938453 NA NA no change no change NA NA 3:43600384 3:58365874 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr3:14.64Mb]],inversion ANO10 NA PXK NA NA NA NA NA NA -ANO10--PXK BS_S6S7SK3P 0.471325567278553 -0.438144001938453 NA NA no change no change NA NA 3:43605714 3:58365874 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr3:14.64Mb]],inversion ANO10 NA PXK NA NA NA NA NA NA -ANO3--ANO3 BS_398KYV92 -0.0435848919001025 -0.0435848919001025 NA NA no change no change NA NA 11:26559779 11:26525635 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr11:0.35Mb]],duplication/non-canonical_splicing ANO3 NA ANO3 NA NA NA NA NA NA -ANO4--ANO4 BS_1AYRM596 -0.602605999942253 -0.602605999942253 NA NA no change no change NA NA 12:100740105 12:100733774 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing ANO4 NA ANO4 NA NA NA NA NA NA -ANO4--ANO4 BS_8RCR7Y4B 0.105142206688096 0.105142206688096 NA NA no change no change NA NA 12:101048401 12:101020034 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing ANO4 NA ANO4 NA NA NA NA NA NA -ANO5--LINC02511 BS_MX23ZY0Y 0.0311635809559572 NA NA NA no change NA NA NA 11:22193532 4:136813731 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr11--chr4]],translocation ANO5 NA LINC02511 NA NA NA NA NA NA -ANO6--ANO6 BS_7BTZQKYY 2.36355690956133 2.36355690956133 NA NA differentially expressed differentially expressed NA NA 12:45378113 12:45331295 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.22Mb]],duplication/non-canonical_splicing ANO6 NA ANO6 NA NA NA NA NA NA -ANTXR1--BCS1L BS_RRAEQZ97 4.54759517616293 0.359890542544236 NA NA differentially expressed no change NA NA 2:69090919 2:218662197 ARRIBA in-frame 9 2 medium [INTRACHROMOSOMAL[chr2:149.41Mb]],deletion ANTXR1 NA BCS1L NA NA NA NA NA NA -ANTXR1--BRAF BS_044XZ8ST 2.97839096214668 1.85547105410597 NA NA differentially expressed no change NA NA 2:69152264 7:140787584 ARRIBA in-frame 8 2 high [INTERCHROMOSOMAL[chr2--chr7]],translocation ANTXR1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -ANTXR1--BRAF BS_044XZ8ST 2.97839096214668 1.85547105410597 NA NA differentially expressed no change NA NA 2:69193415 7:140850212 ARRIBA in-frame 1 2 medium [INTERCHROMOSOMAL[chr2--chr7]],translocation ANTXR1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -ANTXR1--BRAF BS_044XZ8ST 2.97839096214668 1.85547105410597 NA NA differentially expressed no change NA NA 2:69193415 7:140794467 ARRIBA frameshift 1 2 medium [INTERCHROMOSOMAL[chr2--chr7]],translocation ANTXR1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -ANXA2--AC010463.1 BS_AZN38B7V 2.4966737030441 NA NA NA differentially expressed NA NA NA 15:60382342 19:17276495 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr15--chr19]],translocation ANXA2 NA AC010463.1 NA NA NA NA NA NA -ANXA2--BABAM1 BS_AZN38B7V 2.4966737030441 -0.533754765982254 NA NA differentially expressed no change NA NA 15:60382342 19:17276495 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr15--chr19]],translocation ANXA2 NA BABAM1 NA NA NA NA NA NA -ANXA7--MRPS21P6(37534)/RPS27P18(269215) BS_84XCR9GG -1.5735102852335 2.60459932153564 NA -0.0294627825494395 no change differentially expressed NA no change 10:73380013 10:125204471 ARRIBA frameshift 6 1 medium [],duplication ANXA7 NA MRPS21P6 RPS27P18 TumorSuppressorGene NA NA NA NA -AP000317.2--MIR99AHG BS_Z8F3GM85 NA 0.306522241932972 NA NA NA no change NA NA 21:34073745 21:16181591 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr21:17.45Mb]],duplication AP000317.2 NA MIR99AHG NA NA NA NA NA NA -AP000317.2--MIR99AHG BS_Z8F3GM85 NA 0.306522241932972 NA NA NA no change NA NA 21:34073745 21:16231056 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:17.45Mb]],duplication AP000317.2 NA MIR99AHG NA NA NA NA NA NA -AP000487.1--PCSK2 BS_49FQXT2E NA -0.162699671734861 NA NA NA no change NA NA 11:70398098 20:17481584 ARRIBA other 9 0 high [INTERCHROMOSOMAL[chr11--chr20]],translocation AP000487.1 NA PCSK2 NA NA NA NA NA NA -AP000721.2--KAT5 BS_G63HYD6N NA 0.848818644131477 NA NA NA no change NA NA 11:64036159 11:65711874 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr11:1.61Mb]],deletion AP000721.2 NA KAT5 NA NA TumorSuppressorGene, Oncogene NA NA NA -AP000721.2--RELA(333)/RN7SL309P(32125) BS_G63HYD6N NA 4.95228108716172 NA -0.127540765796411 NA differentially expressed NA no change 11:64036159 11:65663427 ARRIBA other 2 0 medium [],deletion AP000721.2 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA -AP000797.1(115629)/LINC02151(429779)--TRA2B BS_5CTVXVRX 17.7959448913914 1.80030107854223 NA NA differentially expressed no change NA NA 11:116067120 3:185931852 ARRIBA other 4 0 high [],translocation AP000797.1 LINC02151 TRA2B NA NA NA NA NA NA -AP000797.1(115629)/LINC02151(429779)--TRA2B BS_8ZS9F31R 25.7824094647046 2.10472195645817 NA NA differentially expressed differentially expressed NA NA 11:116067120 3:185931852 ARRIBA other 2 0 low [],translocation AP000797.1 LINC02151 TRA2B NA NA NA NA NA NA -AP000820.1(33792)/AP001877.1(22544)--SESN3 BS_ZVZDDW2G NA 3.4941378496251 NA NA NA differentially expressed NA NA 11:95734415 11:95193522 ARRIBA other 3 0 medium [],deletion AP000820.1 AP001877.1 SESN3 NA NA NA NA NA NA -AP001029.1--PRELID3A BS_HB03GSHF NA NA NA NA NA NA NA NA 18:12433000 18:12427041 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr18:0.00Mb],LOCAL_REARRANGEMENT:+:[659]],duplication AP001029.1 NA PRELID3A NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_044XZ8ST NA 2.56941456487462 2.56941456487462 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 3 0 low [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_0C7VZC0A NA 4.16921159933826 4.16921159933826 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 8 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_0WVJYM9R NA 0.506102973607568 0.506102973607568 NA NA no change no change NA 11:57152640 11:57189151 ARRIBA other 8 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_13CGKADW NA 6.84133206836265 6.84133206836265 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 7 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_1JDG6JV5 NA 4.43244154690089 4.43244154690089 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 6 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_1T19NFJ8 NA 1.31604871758772 1.31604871758772 NA NA no change no change NA 11:57152640 11:57189151 ARRIBA other 8 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_21RE8W46 NA 3.18571029414805 3.18571029414805 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 11 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_24AHZ9ZW NA 3.5750946351861 3.5750946351861 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_2ADZNNV4 NA 5.33699536150265 5.33699536150265 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 12 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_2R9TCR03 NA 3.17588216176715 3.17588216176715 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_2SFTWNVE NA 1.02082612949145 1.02082612949145 NA NA no change no change NA 11:57152640 11:57189151 ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_34201DKZ NA 1.30103983271973 1.30103983271973 NA NA no change no change NA 11:57152640 11:57189151 ARRIBA other 9 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_470DYRJQ NA 6.41624142475365 6.41624142475365 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 11 3 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_49BQS7Z6 NA 4.37911090096633 4.37911090096633 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 16 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_4HQ3T2NC NA 3.84450657224168 3.84450657224168 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 9 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_4NF35AF6 NA 5.42116968312508 5.42116968312508 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 9 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_4T0HPZDC NA 6.98078696836698 6.98078696836698 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 5 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_4Y6BCYK5 NA 7.17839658655898 7.17839658655898 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 8 2 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_53M8PP88 NA 3.15940631292272 3.15940631292272 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_55P8HPYD NA 3.06829855006756 3.06829855006756 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_5965SFPZ NA 3.31591074878537 3.31591074878537 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 7 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_5CMGN56B NA 4.02512149832349 4.02512149832349 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 3 0 low [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_5NWDARXG NA 5.49997403067275 5.49997403067275 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 8 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_5PEFNDCY NA 2.84783824592979 2.84783824592979 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 35 6 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_60K3EQ9S NA 3.703441326846 3.703441326846 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 4 2 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_680K119G NA 4.64430586851564 4.64430586851564 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 10 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_7Z93ZYMS NA 6.20056093442946 6.20056093442946 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 9 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_8Z3SCKB5 NA 4.54265017791049 4.54265017791049 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 5 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_8ZP3CBQA NA 4.24409676206602 4.24409676206602 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 9 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_92VDQ0NE NA 1.79300359929307 1.79300359929307 NA NA no change no change NA 11:57152640 11:57189151 ARRIBA other 4 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_94MT16N2 NA 2.01763267669589 2.01763267669589 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_9DFBHHB5 NA 5.85236092973254 5.85236092973254 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 8 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_9SJWWYQ4 NA 4.34806121809162 4.34806121809162 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 4 0 low [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_A1VEGWTR NA 4.54802194943629 4.54802194943629 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 17 4 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_AGTPCRR4 NA 2.72697474204151 2.72697474204151 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 7 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_AMQGM1V9 NA 2.81341004387575 2.81341004387575 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 5 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_AP0SZ364 NA 6.90584704747913 6.90584704747913 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 7 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_BHR08WGW NA 2.63709989443949 2.63709989443949 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 3 0 low [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_C7A2TYAC NA 2.85541821566711 2.85541821566711 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 6 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_CGB2WS2A NA 2.55217151273 2.55217151273 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 9 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_CVGFNCBJ NA 1.50947388964785 1.50947388964785 NA NA no change no change NA 11:57152640 11:57189151 ARRIBA other 5 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_CZ82ANWP NA 3.610581498234 3.610581498234 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_D2K9C7XR NA 5.7147299810471 5.7147299810471 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 8 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_D3YBV7KB NA 3.58607316888524 3.58607316888524 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 7 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_DBDXCXT5 NA 3.55297618318446 3.55297618318446 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 5 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_DPF1CX0G NA 2.3485356128947 2.3485356128947 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 3 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_E4GC9EXR NA 4.93949440673872 4.93949440673872 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 7 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_EHVYJAVA NA 1.81109845329654 1.81109845329654 NA NA no change no change NA 11:57152640 11:57189151 ARRIBA other 10 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_ERJAJ0KA NA 0.880153203649013 0.880153203649013 NA NA no change no change NA 11:57152640 11:57189151 ARRIBA other 6 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_ET8CJXSF NA 1.65568443197951 1.65568443197951 NA NA no change no change NA 11:57152640 11:57189151 ARRIBA other 2 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_FWMJPKCV NA 3.610581498234 3.610581498234 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 8 2 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_G9XE3N9T NA 4.90005112755748 4.90005112755748 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 13 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_GV3NZ9QD NA 3.29731945978681 3.29731945978681 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 7 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_GWCRMKE6 NA 4.41164012950623 4.41164012950623 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 4 0 low [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_GYA4V1RD NA 4.71183941461649 4.71183941461649 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 11 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_H3FE3TH9 NA 3.65350590366516 3.65350590366516 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 9 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_H8A9PSYA NA 2.39075794243564 2.39075794243564 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_HSHN8PBB NA 6.51494939797217 6.51494939797217 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 7 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_HV8PFRBR NA 1.68763445350272 1.68763445350272 NA NA no change no change NA 11:57152640 11:57189151 ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_JKXA3FQC NA 6.19539198740949 6.19539198740949 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 15 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_JVA2NQFF NA 5.11867704027504 5.11867704027504 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 7 3 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_K2VYFVKZ NA 6.84327514707347 6.84327514707347 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 6 3 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_KX6J8TRK NA 4.66986814277255 4.66986814277255 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_M1T1K5WV NA 7.94845419080751 7.94845419080751 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 12 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_M4NVX721 NA 5.17085899410694 5.17085899410694 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 4 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_M4TTKPNR NA 5.76224157081619 5.76224157081619 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 8 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_M85CXHDV NA 5.12006580691088 5.12006580691088 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 4 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_M8M56Z4Y NA 5.27303783686315 5.27303783686315 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 6 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_ME3HKN2C NA 3.00545227140559 3.00545227140559 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 10 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_MKP2Y41Z NA 2.03945727992578 2.03945727992578 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 5 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_MWWZBQ60 NA 3.85182064942124 3.85182064942124 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_MY9D8XZ1 NA 4.41733226740803 4.41733226740803 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 4 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_N8J1DP02 NA 1.41124846372932 1.41124846372932 NA NA no change no change NA 11:57152640 11:57189151 ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_NB5XWMJT NA 4.70183720405015 4.70183720405015 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_NPQJ20KX NA 3.76497963068208 3.76497963068208 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 7 0 low [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_NRPG5K4K NA 7.10695176640971 7.10695176640971 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 42 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_NYS8TRCB NA 2.83260156851455 2.83260156851455 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 15 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_PEP9NZXN NA 5.0221797274531 5.0221797274531 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 6 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_QNAQGAV6 NA 3.06140135734373 3.06140135734373 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_QTSXW7DA NA 2.69063890980938 2.69063890980938 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 14 2 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_QV51J756 NA 3.16930623612708 3.16930623612708 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 7 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_S458NMKH NA 6.60593109503035 6.60593109503035 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 10 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_SBFNFZ8B NA 3.66675420476355 3.66675420476355 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_SDA4RMMG NA 5.70188961186859 5.70188961186859 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 36 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_SFKZSJN1 NA 4.64087560382902 4.64087560382902 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 8 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_T2QPMZCM NA 2.96256182719739 2.96256182719739 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 3 2 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_T4P3J13C NA 4.84740982722836 4.84740982722836 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_T55Y4Z0Y NA 6.78889027335125 6.78889027335125 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 11 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_TK84K675 NA 3.05448303995378 3.05448303995378 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_TMTV769C NA 3.62408320527138 3.62408320527138 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 3 0 low [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_V89HGTET NA 5.92642752790629 5.92642752790629 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 6 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_VNE0ZPBS NA 3.26283285308739 3.26283285308739 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 18 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_VR7FR1NE NA 3.78763102914249 3.78763102914249 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 17 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_W18SF91A NA 3.19874830357572 3.19874830357572 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 24 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_WWKNJSJ5 NA 1.96213040378111 1.96213040378111 NA NA no change no change NA 11:57152640 11:57189151 ARRIBA other 7 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_WYG77VVP NA 6.21514237509861 6.21514237509861 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 6 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_X0F9AYEC NA 3.53344326093118 3.53344326093118 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_X16PENSA NA 4.93497825289437 4.93497825289437 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 10 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_Y0PCBNJV NA 5.25610793621746 5.25610793621746 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 4 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_Y7F9E2E9 NA 3.40367267395987 3.40367267395987 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 10 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_YB2RXRHT NA 4.05423917985923 4.05423917985923 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 6 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_YVMEEBKC NA 3.47955778236421 3.47955778236421 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 6 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_Z6BWR941 NA 6.41232732073833 6.41232732073833 NA NA differentially expressed differentially expressed NA 11:57152640 11:57189151 ARRIBA other 13 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_ZVZDDW2G NA 1.16926974767908 1.16926974767908 NA NA no change no change NA 11:57152640 11:57189151 ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA -AP001790.1(61591)/AP000820.1(138942)--AP001790.1 BS_6T4JGBGY NA NA NA NA NA NA NA NA 11:95559144 11:95497494 ARRIBA other 28 7 high [],duplication AP001790.1 AP000820.1 AP001790.1 NA NA NA NA NA NA -AP001790.1(61591)/AP000820.1(138942)--AP001790.1 BS_9M5XJ10G NA NA NA NA NA NA NA NA 11:95559144 11:95497494 ARRIBA other 4 0 high [],duplication AP001790.1 AP000820.1 AP001790.1 NA NA NA NA NA NA -AP001978.1(127806)/AP001541.1(226699)--RSF1 BS_BWBDH9GM NA 4.50786093093775 NA NA NA differentially expressed NA NA 11:79740106 11:77702495 ARRIBA other 1 0 low [],inversion AP001978.1 AP001541.1 RSF1 NA NA Oncogene NA NA NA -AP001979.2--OPCML BS_EBMCTR80 NA 3.06160116219005 NA NA NA differentially expressed NA NA 11:133725367 11:133297188 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr11:0.25Mb]],deletion AP001979.2 NA OPCML NA NA TumorSuppressorGene, Oncogene NA NA NA -AP002004.1--AP002004.2 BS_8NY9J9NQ NA NA NA NA NA NA NA NA 11:104905947 11:104873256 ARRIBA other 17 1 medium [INTRACHROMOSOMAL[chr11:0.03Mb],LOCAL_INVERSION:-:+:[28132]],duplication/3'-3' AP002004.1 NA AP002004.2 NA NA NA NA NA NA -AP002004.1--AP003181.1 BS_5GNQC2FF NA NA NA NA NA NA NA NA 11:104918113 11:105268311 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.24Mb]],duplication AP002004.1 NA AP003181.1 NA NA NA NA NA NA -AP002026.1--AP002026.1 BS_CXVJK2FY NA NA NA NA NA NA NA NA 4:99288785 4:99133555 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.21Mb]],duplication/non-canonical_splicing AP002026.1 NA AP002026.1 NA NA NA NA NA NA -AP002373.2(27226)/NXPE2P1(31357)--REXO2 BS_TW8DQH8J NA 0.318323060305462 -0.148371618789917 NA NA no change no change NA 11:114481349 11:114445979 ARRIBA other 3 0 high [],duplication AP002373.2 NXPE2P1 REXO2 NA NA NA NA NA NA -AP002989.1--PDGFD BS_8Q77HZ4R NA 5.23160760617499 NA NA NA differentially expressed NA NA 11:103893875 11:104000255 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11915]],duplication AP002989.1 NA PDGFD NA NA NA NA NA NA -AP002989.1--PDGFD BS_B53Z0T1Q NA 7.0100270033122 NA NA NA differentially expressed NA NA 11:103893875 11:104000255 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11915]],duplication AP002989.1 NA PDGFD NA NA NA NA NA NA -AP002989.1--PDGFD BS_D0BGESQF NA 11.1933247229787 NA NA NA differentially expressed NA NA 11:103893875 11:104000255 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11915]],duplication AP002989.1 NA PDGFD NA NA NA NA NA NA -AP002989.1--PDGFD BS_JK0VPG1T NA 17.1367220955059 NA NA NA differentially expressed NA NA 11:103893875 11:104000237 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11915]],duplication AP002989.1 NA PDGFD NA NA NA NA NA NA -AP002989.1--PDGFD BS_JK0VPG1T NA 17.1367220955059 NA NA NA differentially expressed NA NA 11:103893875 11:103927126 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11915]],duplication AP002989.1 NA PDGFD NA NA NA NA NA NA -AP002989.1--PDGFD BS_WRQHPSXQ NA 8.21750517362932 NA NA NA differentially expressed NA NA 11:103893875 11:104092948 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11915]],duplication AP002989.1 NA PDGFD NA NA NA NA NA NA -AP002989.1--PDGFD BS_WRQHPSXQ NA 8.21750517362932 NA NA NA differentially expressed NA NA 11:103893875 11:104000255 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11915]],duplication AP002989.1 NA PDGFD NA NA NA NA NA NA -AP002989.1--PDGFD BS_WRQHPSXQ NA 8.21750517362932 NA NA NA differentially expressed NA NA 11:103893875 11:104000237 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11915]],duplication AP002989.1 NA PDGFD NA NA NA NA NA NA -AP002989.1(9409)/PDGFD(2506)--PDGFD BS_WRQHPSXQ NA 8.21750517362932 8.21750517362932 NA NA differentially expressed differentially expressed NA 11:103904680 11:104000255 ARRIBA other 6 0 high [],duplication AP002989.1 PDGFD PDGFD NA NA NA NA NA NA -AP003354.2--AZIN1-AS1 BS_GE2RVZE6 NA 2.49692443725791 NA NA NA differentially expressed NA NA 8:102978955 8:102904224 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.00Mb],LOCAL_REARRANGEMENT:+:[909]],duplication AP003354.2 NA AZIN1-AS1 NA NA NA NA NA NA -AP003398.1(295292)/MTND4LP18(299300)--TENM4 BS_49FQXT2E NA 7.42883429428394 NA NA NA differentially expressed NA NA 11:81252926 11:78891336 ARRIBA other 4 0 medium [],deletion AP003398.1 MTND4LP18 TENM4 NA NA NA NA NA NA -AP003419.2--RELA BS_G63HYD6N NA 4.95228108716172 NA NA NA differentially expressed NA NA 11:67368534 11:65662351 ARRIBA other 10 0 medium [INTRACHROMOSOMAL[chr11:1.69Mb]],deletion AP003419.2 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -AP003555.3--ARRB1 BS_B1C6GZ84 NA -0.519873963431242 NA NA NA no change NA NA 11:69986166 11:75277448 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr11:5.25Mb]],inversion AP003555.3 NA ARRB1 NA NA NA NA NA NA -AP1S1--AC004951.2 BS_P9JP6JFA -0.436417301299024 NA NA NA no change NA NA NA 7:101154517 7:43988247 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:57.16Mb]],inversion AP1S1 NA AC004951.2 NA NA NA NA NA NA -AP1S1--POLR2J4 BS_P9JP6JFA -0.436417301299024 1.67720325728742 NA NA no change no change NA NA 7:101154517 7:43988247 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:57.14Mb]],inversion AP1S1 NA POLR2J4 NA NA NA NA NA NA -AP2A2--GDPD5 BS_B1C6GZ84 0.542509785473296 -0.135846669748716 NA NA no change no change NA NA 11:926088 11:75490320 ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr11:74.42Mb]],inversion AP2A2 NA GDPD5 NA NA NA NA NA NA -AP3D1--AC137630.2 BS_VMQMGSJY 0.363794449522557 NA NA NA no change NA NA NA 19:2108687 3:48980346 ARRIBA frameshift 39 2 high [INTERCHROMOSOMAL[chr19--chr3]],translocation AP3D1 NA AC137630.2 NA NA NA NA NA NA -AP3D1--KLF2(20339)/AC020917.3(4249) BS_61E80SD6 0.0293351907265983 0.626019513341465 NA NA no change no change NA NA 19:2137011 19:16348213 ARRIBA frameshift 23 2 high [],duplication AP3D1 NA KLF2 AC020917.3 NA TranscriptionFactor NA NA NA -AP3S2--ARPIN BS_JTMXAMB7 2.71991089838883 2.4435594237793 NA NA differentially expressed differentially expressed NA NA 15:89871475 15:89910819 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_REARRANGEMENT:-:[368]],duplication AP3S2 NA ARPIN NA NA NA NA NA NA -APBA2--MAN2A2 BS_84XCR9GG 0.588394588529575 0.995217183331815 NA NA no change no change NA NA 15:28995806 15:90902317 ARRIBA other 20 4 high [INTRACHROMOSOMAL[chr15:61.78Mb]],deletion APBA2 NA MAN2A2 NA NA NA NA NA NA -APBA2--MAN2A2 BS_84XCR9GG 0.588394588529575 0.995217183331815 NA NA no change no change NA NA 15:28995806 15:90904190 ARRIBA other 17 2 high [INTRACHROMOSOMAL[chr15:61.78Mb]],deletion APBA2 NA MAN2A2 NA NA NA NA NA NA -APBB2--RBM47 BS_PNYN0AYD 0.285151901689361 3.92135148697532 NA NA no change differentially expressed NA NA 4:41142987 4:40544506 ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr4:0.18Mb]],deletion APBB2 NA RBM47 NA NA NA NA NA NA -APBB2--ZFC3H1 BS_J483EMFP 1.40210295805077 0.176691693113015 NA NA no change no change NA NA 4:40900224 12:71663344 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr4--chr12]],translocation APBB2 NA ZFC3H1 NA NA NA NA NA NA -API5--SLX4 BS_6JHXXVR7 3.11845216961031 0.108347906197283 NA NA differentially expressed no change NA NA 11:43312196 16:3588587 ARRIBA frameshift 17 4 high [INTERCHROMOSOMAL[chr11--chr16]],translocation/5'-5' API5 NA SLX4 NA NA TumorSuppressorGene NA NA NA -API5--SLX4 BS_KE56MMY0 2.8546831173809 0.728737644472622 NA NA differentially expressed no change NA NA 11:43312196 16:3588587 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr11--chr16]],translocation/5'-5' API5 NA SLX4 NA NA TumorSuppressorGene NA NA NA -APIP--EHF BS_MN5XVP5A -1.58631144792918 5.12286166330891 NA NA no change differentially expressed NA NA 11:34888752 11:34642628 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr11:0.19Mb]],inversion APIP NA EHF NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -ARAP2--ARAP2 BS_1EBQ3T20 0.324830471918508 0.324830471918508 NA NA no change no change NA NA 4:36073689 4:36167047 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.30Mb]],duplication/non-canonical_splicing ARAP2 NA ARAP2 NA Oncogene Oncogene NA NA NA -ARAP2--PCDH7 BS_GW0GKWMS 1.33817624198497 3.29603334112774 NA NA no change differentially expressed NA NA 4:36107565 4:30903372 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr4:4.80Mb]],deletion/5'-5' ARAP2 NA PCDH7 NA Oncogene NA NA NA NA -ARFGAP1--MAFB BS_B61168DE -0.485123375825252 2.50129186628968 NA NA no change differentially expressed NA NA 20:63286443 20:40688332 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr20:22.58Mb]],duplication/5'-5' ARFGAP1 NA MAFB NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -ARFGAP2--PDHX BS_RCCN63K6 0.0109466395905798 0.246526435763395 NA NA no change no change NA NA 11:47175182 11:34978124 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr11:12.14Mb]],inversion ARFGAP2 NA PDHX NA NA NA NA NA NA -ARFGAP2--PDHX BS_RCCN63K6 0.0109466395905798 0.246526435763395 NA NA no change no change NA NA 11:47176516 11:34978124 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr11:12.14Mb]],inversion ARFGAP2 NA PDHX NA NA NA NA NA NA -ARFGAP3--HMOX1 BS_QWTE1CWR 1.35857467385603 4.30215993884086 NA NA no change differentially expressed NA NA 22:42807073 22:35380934 ARRIBA frameshift 9 3 high [INTRACHROMOSOMAL[chr22:7.40Mb]],inversion ARFGAP3 NA HMOX1 NA NA NA NA NA NA -ARFGAP3--HMOX1 BS_QWTE1CWR 1.35857467385603 4.30215993884086 NA NA no change differentially expressed NA NA 22:42807073 22:35383106 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr22:7.40Mb]],inversion ARFGAP3 NA HMOX1 NA NA NA NA NA NA -ARFGEF3--AL024497.2 BS_PNYN0AYD 0.804054455927511 NA NA NA no change NA NA NA 6:138280164 6:133456753 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr6:4.71Mb]],inversion ARFGEF3 NA AL024497.2 NA NA NA NA NA NA -ARFGEF3--EYA4 BS_PNYN0AYD 0.804054455927511 0.721551416153573 NA NA no change no change NA NA 6:138280164 6:133456753 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr6:4.63Mb]],inversion/3'-3' ARFGEF3 NA EYA4 NA NA TumorSuppressorGene, Oncogene NA NA NA -ARGLU1--LINC00443(42665)/AL162574.2(58795) BS_Z8YZ6QGS -0.401877556950712 1.21771746115075 NA NA no change no change NA NA 13:106567573 13:106714828 ARRIBA frameshift 6 0 medium [],duplication ARGLU1 NA LINC00443 AL162574.2 NA NA NA NA NA -ARHGAP1--MAP4K2 BS_CZ3NA7KV -0.587481018936855 -0.241024797068989 NA NA no change no change NA NA 11:46700551 11:64800826 ARRIBA other 18 0 medium [INTRACHROMOSOMAL[chr11:18.08Mb]],duplication ARHGAP1 NA MAP4K2 NA NA Oncogene, Kinase NA NA NA -ARHGAP12--FAM107B BS_QWTE1CWR -0.371360513709504 -0.589749326203562 NA NA no change no change NA NA 10:31928822 10:14530515 ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr10:17.03Mb]],inversion/3'-3' ARHGAP12 NA FAM107B NA NA NA NA NA NA -ARHGAP15--ARHGAP15 BS_VNE0ZPBS 1.25722126850632 1.25722126850632 NA NA no change no change NA NA 2:143624267 2:143228581 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.68Mb]],duplication/non-canonical_splicing ARHGAP15 NA ARHGAP15 NA NA NA NA NA NA -ARHGAP15--KYNU BS_3NWQXPQV 2.87083787649022 0.814612188985031 NA NA differentially expressed no change NA NA 2:143624267 2:142927659 ARRIBA frameshift 3 0 high [ChimerSeq,CCLE,INTRACHROMOSOMAL[chr2:0.04Mb],LOCAL_REARRANGEMENT:+:[35530]],duplication ARHGAP15 NA KYNU NA NA NA NA NA TCGAFusion -ARHGAP19-SLIT1--ARHGAP19-SLIT1 BS_TYAYZ9ZW 10.6601173674656 10.6601173674656 NA NA differentially expressed differentially expressed NA NA 10:97157818 10:97164890 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.14Mb]],duplication/non-canonical_splicing ARHGAP19-SLIT1 NA ARHGAP19-SLIT1 NA NA NA NA NA NA -ARHGAP20--OR4A6P(506104)/TRIM48(30262) BS_RCCN63K6 0.770141851109822 -0.0467500233313125 NA 15.7985951567984 no change no change NA differentially expressed 11:110690547 11:55231920 ARRIBA frameshift 4 1 high [],deletion ARHGAP20 NA OR4A6P TRIM48 Oncogene NA NA NA NA -ARHGAP33--ATP4A BS_T1YHK6B7 2.72083546217862 1.01574909180697 NA NA differentially expressed no change NA NA 19:35782869 19:35557847 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr19:0.21Mb]],inversion ARHGAP33 NA ATP4A NA NA NA NA NA NA -ARHGAP35--AP2S1(21452)/ARHGAP35(46232) BS_GYA4V1RD 1.8162611470286 -0.847567954126686 NA 1.8162611470286 no change no change NA no change 19:46922356 19:46872444 ARRIBA frameshift 1 0 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_2R9TCR03 1.2500569401241 -0.195272763088246 NA 1.2500569401241 no change no change NA no change 19:46989675 19:46918488 ARRIBA frameshift 3 0 medium [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_39CGACC7 1.46719312470225 -0.426165439483713 NA 1.46719312470225 no change no change NA no change 19:46989675 19:46918488 ARRIBA frameshift 1 0 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_51RA1PGE 1.72241056866125 0.550727008940252 NA 1.72241056866125 no change no change NA no change 19:46989675 19:46918488 ARRIBA frameshift 1 0 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_7BTZQKYY 2.04985811428039 -0.790911611646808 NA 2.04985811428039 differentially expressed no change NA differentially expressed 19:46989675 19:46918488 ARRIBA frameshift 5 0 medium [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_8F9BDWY4 2.61355719665359 -0.382040144922394 NA 2.61355719665359 differentially expressed no change NA differentially expressed 19:46989675 19:46918488 ARRIBA frameshift 1 0 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_8ZD6J47V 3.62337532966382 0.414491404666552 NA 3.62337532966382 differentially expressed no change NA differentially expressed 19:46989675 19:46918488 ARRIBA frameshift 1 1 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_AWH9757B 3.56262043327527 0.147336688025593 NA 3.56262043327527 differentially expressed no change NA differentially expressed 19:46989675 19:46918488 ARRIBA frameshift 2 1 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_FWMJPKCV 3.0268116733432 -1.05821215552187 NA 3.0268116733432 differentially expressed no change NA differentially expressed 19:46989675 19:46918488 ARRIBA frameshift 3 4 medium [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_M4NVX721 2.27540976392622 0.384694182884399 NA 2.27540976392622 differentially expressed no change NA differentially expressed 19:46989675 19:46918488 ARRIBA frameshift 4 0 medium [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_N6NE6B3W 1.93758689354974 -0.596259882821998 NA 1.93758689354974 no change no change NA no change 19:46989675 19:46918488 ARRIBA frameshift 1 3 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_NKRYMHEP 3.37781279597819 -0.573557383464317 NA 3.37781279597819 differentially expressed no change NA differentially expressed 19:46989675 19:46918488 ARRIBA frameshift 1 0 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_NR3P3GN2 2.04528264672208 0.864028767063312 NA 2.04528264672208 differentially expressed no change NA differentially expressed 19:46989675 19:46918488 ARRIBA frameshift 2 1 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_PZVHMSYN 1.81913614550998 -0.344018186247298 NA 1.81913614550998 no change no change NA no change 19:46989675 19:46918488 ARRIBA frameshift 1 0 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_QHS3V0GP 3.59284327170994 0.974141006513695 NA 3.59284327170994 differentially expressed no change NA differentially expressed 19:46989675 19:46918488 ARRIBA frameshift 2 0 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_TZ5D0A7R 1.25731556156497 -0.0698125452536308 NA 1.25731556156497 no change no change NA no change 19:46989675 19:46918488 ARRIBA frameshift 3 1 medium [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_VTJ9ESSV 2.27243331152027 -1.21252236632362 NA 2.27243331152027 differentially expressed no change NA differentially expressed 19:46989675 19:46918488 ARRIBA frameshift 2 1 medium [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_YBJBSRHV 2.79539173053587 1.27622795507178 NA 2.79539173053587 differentially expressed no change NA differentially expressed 19:46989675 19:46918488 ARRIBA frameshift 1 3 high [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--AP2S1(67500)/ARHGAP35(184) BS_45J79YTF 4.5121280455704 0.282529975239407 NA 4.5121280455704 differentially expressed no change NA differentially expressed 19:46937408 19:46918492 ARRIBA frameshift 1 1 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA -ARHGAP35--SCAPER BS_AZN38B7V 0.182509463647499 -2.5774548866531 NA NA no change differentially expressed NA NA 19:46937408 15:76574284 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr19--chr15]],translocation ARHGAP35 NA SCAPER NA TranscriptionFactor NA NA NA NA -ARHGAP39--NRBP2 BS_HZE3KYZ1 -0.47097015069844 -1.24848869448651 NA NA no change no change NA NA 8:144605535 8:143840229 ARRIBA frameshift 20 0 high [INTRACHROMOSOMAL[chr8:0.69Mb]],deletion ARHGAP39 NA NRBP2 NA NA Kinase, Kinase NA NA NA -ARHGAP42--CNTN5 BS_WVW3W6ZB 11.5876961349169 8.92416818267817 NA NA differentially expressed differentially expressed NA NA 11:100687832 11:100340463 ARRIBA frameshift 2 0 low [CCLE,INTRACHROMOSOMAL[chr11:0.33Mb]],duplication ARHGAP42 NA CNTN5 NA NA NA NA NA NA -ARHGAP42--SORL1(353896)/RNU6-256P(16766) BS_5PJCHF6V 1.94653340612641 -0.807043734401641 NA NA no change no change NA NA 11:100859625 11:121987589 ARRIBA frameshift 3 1 high [],deletion ARHGAP42 NA SORL1 RNU6-256P NA Oncogene NA NA NA -ARHGEF10--ARHGEF10 BS_3P20Q2C3 1.12671194382567 1.12671194382567 NA NA no change no change NA NA 8:1933942 8:1880048 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.13Mb]],duplication/non-canonical_splicing ARHGEF10 NA ARHGEF10 NA CosmicCensus CosmicCensus NA NA NA -ARHGEF10--ARHGEF10 BS_G63HYD6N -0.509511957935737 -0.509511957935737 NA NA no change no change NA NA 8:1894572 8:1876571 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.13Mb]],duplication/non-canonical_splicing ARHGEF10 NA ARHGEF10 NA CosmicCensus CosmicCensus NA NA NA -ARHGEF10--KBTBD11-OT1 BS_G63HYD6N -0.509511957935737 -1.3556306704153 NA NA no change no change NA NA 8:1894572 8:1882635 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication ARHGEF10 NA KBTBD11-OT1 NA CosmicCensus NA NA NA NA -ARHGEF10--KBTBD11-OT1 BS_G63HYD6N -0.509511957935737 -1.3556306704153 NA NA no change no change NA NA 8:1894572 8:1876571 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication ARHGEF10 NA KBTBD11-OT1 NA CosmicCensus NA NA NA NA -ARHGEF10--KBTBD11-OT1 BS_G63HYD6N -0.509511957935737 -1.3556306704153 NA NA no change no change NA NA 8:1909470 8:1876571 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication ARHGEF10 NA KBTBD11-OT1 NA CosmicCensus NA NA NA NA -ARHGEF10--KBTBD11-OT1 BS_G63HYD6N -0.509511957935737 -1.3556306704153 NA NA no change no change NA NA 8:1864436 8:1843353 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication ARHGEF10 NA KBTBD11-OT1 NA CosmicCensus NA NA NA NA -ARHGEF10--KBTBD11-OT1 BS_G63HYD6N -0.509511957935737 -1.3556306704153 NA NA no change no change NA NA 8:1898525 8:1880048 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication ARHGEF10 NA KBTBD11-OT1 NA CosmicCensus NA NA NA NA -ARHGEF10--KBTBD11-OT1 BS_G63HYD6N -0.509511957935737 -1.3556306704153 NA NA no change no change NA NA 8:1903451 8:1843353 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication ARHGEF10 NA KBTBD11-OT1 NA CosmicCensus NA NA NA NA -ARHGEF12--ETS1 BS_7BW0YRPY 1.65906972804983 3.08285693715961 NA NA no change differentially expressed NA NA 11:120337275 11:128490576 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr11:7.97Mb]],inversion ARHGEF12 NA ETS1 NA TumorSuppressorGene, CosmicCensus, Oncogene Oncogene, TranscriptionFactor NA NA NA -ARHGEF2--NTRK1 BS_KE56MMY0 2.11149462496571 5.90929100181055 NA NA differentially expressed differentially expressed NA NA 1:155950299 1:156874571 ARRIBA frameshift 7 3 medium [INTRACHROMOSOMAL[chr1:0.81Mb]],inversion ARHGEF2 NA NTRK1 NA Oncogene CosmicCensus, Oncogene, Kinase NA NA NA -ARHGEF2--NTRK1 BS_KE56MMY0 2.11149462496571 5.90929100181055 NA NA differentially expressed differentially expressed NA NA 1:155950269 1:156874571 ARRIBA frameshift 2 4 medium [INTRACHROMOSOMAL[chr1:0.81Mb]],inversion ARHGEF2 NA NTRK1 NA Oncogene CosmicCensus, Oncogene, Kinase NA NA NA -ARHGEF28--AC143336.1(125214)/MAP1B(225719) BS_NNPEC7W1 1.71118309909046 NA NA 2.5149485616659 no change NA NA differentially expressed 5:73684884 5:71881515 ARRIBA frameshift 6 0 high [],duplication ARHGEF28 NA AC143336.1 MAP1B NA NA NA NA NA -ARHGEF28--AC143336.1(125214)/MAP1B(225719) BS_TM9MH0RP 0.368258050014042 NA NA 3.38426333613006 no change NA NA differentially expressed 5:73684884 5:71881515 ARRIBA frameshift 7 0 high [],duplication ARHGEF28 NA AC143336.1 MAP1B NA NA NA NA NA -ARHGEF28--AC143336.1(125214)/MAP1B(225719) BS_ZVWE73JZ 1.06143912895008 NA NA 2.84897938653338 no change NA NA differentially expressed 5:73684884 5:71881515 ARRIBA frameshift 7 2 high [],duplication ARHGEF28 NA AC143336.1 MAP1B NA NA NA NA NA -ARHGEF28--AC143336.1(221655)/MAP1B(129278) BS_TM9MH0RP 0.368258050014042 NA NA 3.38426333613006 no change NA NA differentially expressed 5:73684884 5:71977956 ARRIBA frameshift 8 0 high [],duplication ARHGEF28 NA AC143336.1 MAP1B NA NA NA NA NA -ARHGEF28--AC143336.1(221655)/MAP1B(129278) BS_ZVWE73JZ 1.06143912895008 NA NA 2.84897938653338 no change NA NA differentially expressed 5:73684884 5:71977956 ARRIBA frameshift 3 1 high [],duplication ARHGEF28 NA AC143336.1 MAP1B NA NA NA NA NA -ARHGEF3--PLCL2-AS1 BS_FAQQ0GCQ 0.829252428272049 6.44702647294302 NA NA no change differentially expressed NA NA 3:56958823 3:17042913 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr3:39.68Mb]],deletion ARHGEF3 NA PLCL2-AS1 NA NA NA NA NA NA -ARHGEF7--LINC01446 BS_4QW2S1Q8 -0.34063046027043 46.6236033932362 NA NA no change differentially expressed NA NA 13:111153991 7:53657448 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr13--chr7]],translocation ARHGEF7 NA LINC01446 NA NA NA NA NA NA -ARID1B--LDB2 BS_G3RJTBZD 3.31484073560701 -0.507510244833549 NA NA differentially expressed no change NA NA 6:157200798 4:16637202 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr6--chr4]],translocation ARID1B NA LDB2 NA CosmicCensus, Oncogene NA NA NA NA -ARID1B--PLAGL1 BS_3F4FQJMR 1.97350769543857 0.858255952722617 NA NA no change no change NA NA 6:157148951 6:143942663 ARRIBA in-frame 6 6 high [INTRACHROMOSOMAL[chr6:12.71Mb]],inversion ARID1B NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -ARID1B--PLAGL1 BS_3F4FQJMR 1.97350769543857 0.858255952722617 NA NA no change no change NA NA 6:157148981 6:143942663 ARRIBA in-frame 4 6 high [INTRACHROMOSOMAL[chr6:12.71Mb]],inversion ARID1B NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -ARID1B--PLAGL1 BS_HC44ZA0V 3.16947653293838 1.75337328976212 NA NA differentially expressed no change NA NA 6:157148951 6:143942663 ARRIBA in-frame 19 1 high [INTRACHROMOSOMAL[chr6:12.71Mb]],inversion ARID1B NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -ARID1B--PLAGL1 BS_HC44ZA0V 3.16947653293838 1.75337328976212 NA NA differentially expressed no change NA NA 6:157148981 6:143942663 ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr6:12.71Mb]],inversion ARID1B NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -ARID1B--QKI BS_3F4FQJMR 1.97350769543857 1.34819836433665 NA NA no change no change NA NA 6:157036876 6:163455279 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr6:6.20Mb]],deletion ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA -ARID1B--QKI BS_3F4FQJMR 1.97350769543857 1.34819836433665 NA NA no change no change NA NA 6:156829421 6:163455279 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr6:6.20Mb]],deletion ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA -ARID1B--QKI BS_HC44ZA0V 3.16947653293838 1.44951069778525 NA NA differentially expressed no change NA NA 6:156935576 6:163455279 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr6:6.20Mb]],deletion ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA -ARID1B--QKI BS_HC44ZA0V 3.16947653293838 1.44951069778525 NA NA differentially expressed no change NA NA 6:156829421 6:163455279 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr6:6.20Mb]],deletion ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA -ARID1B--QKI BS_HC44ZA0V 3.16947653293838 1.44951069778525 NA NA differentially expressed no change NA NA 6:157084905 6:163455279 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr6:6.20Mb]],deletion ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA -ARID1B--QKI BS_HC44ZA0V 3.16947653293838 1.44951069778525 NA NA differentially expressed no change NA NA 6:156901525 6:163455279 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:6.20Mb]],deletion ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA -ARID1B--QKI BS_HC44ZA0V 3.16947653293838 1.44951069778525 NA NA differentially expressed no change NA NA 6:157110561 6:163455279 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr6:6.20Mb]],deletion ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA -ARID1B--QKI BS_HC44ZA0V 3.16947653293838 1.44951069778525 NA NA differentially expressed no change NA NA 6:157036876 6:163455279 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:6.20Mb]],deletion ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA -ARID4B--AL391645.1 BS_QWTE1CWR 0.0482491185852844 NA NA NA no change NA NA NA 1:235160893 1:190487896 ARRIBA other 9 1 high [INTRACHROMOSOMAL[chr1:44.64Mb]],deletion/5'-5' ARID4B NA AL391645.1 NA NA NA NA NA NA -ARID4B--AL391645.1 BS_WKESC3XN 2.89262678640164 NA NA NA differentially expressed NA NA NA 1:235160511 1:190487896 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr1:44.64Mb]],deletion/5'-5' ARID4B NA AL391645.1 NA NA NA NA NA NA -ARIH1--AP005230.1 BS_TK84K675 1.7488312484592 NA NA NA no change NA NA NA 15:72572165 18:2035147 ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr15--chr18]],translocation ARIH1 NA AP005230.1 NA NA NA NA NA NA -ARIH1--AP005230.1 BS_TK84K675 1.7488312484592 NA NA NA no change NA NA NA 15:72572165 18:1906646 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr15--chr18]],translocation ARIH1 NA AP005230.1 NA NA NA NA NA NA -ARIH1--AP005230.1 BS_TK84K675 1.7488312484592 NA NA NA no change NA NA NA 15:72572165 18:1886447 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr15--chr18]],translocation ARIH1 NA AP005230.1 NA NA NA NA NA NA -ARIH1--COX7B BS_4B0BAVTX 3.07605016978185 -3.80180625209905 NA NA differentially expressed differentially expressed NA NA 15:72572165 X:77902643 ARRIBA in-frame 8 0 high [INTERCHROMOSOMAL[chr15--chrX]],translocation ARIH1 NA COX7B NA NA NA NA NA NA -ARL17A--TTC39A BS_DY88N5ZT 1.8043850953726 -1.36775307063955 NA NA no change no change NA NA 17:46576175 1:51309017 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr17--chr1]],translocation/5'-5' ARL17A NA TTC39A NA NA NA NA NA NA -ARL2-SNX15--MACROD1 BS_FW5ECXXK -0.410167103089346 -2.40742512371681 NA NA no change differentially expressed NA NA 11:65034962 11:64077016 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr11:0.85Mb]],inversion ARL2-SNX15 NA MACROD1 NA NA Oncogene NA NA NA -ARL6IP5--AC137630.1 BS_FAQQ0GCQ -0.0299586178957712 NA NA NA no change NA NA NA 3:69085223 3:48985389 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr3:20.09Mb]],inversion ARL6IP5 NA AC137630.1 NA TumorSuppressorGene NA NA NA NA -ARL6IP5--AC137630.4 BS_FAQQ0GCQ -0.0299586178957712 NA NA NA no change NA NA NA 3:69085223 3:48985701 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr3:20.10Mb]],inversion ARL6IP5 NA AC137630.4 NA TumorSuppressorGene NA NA NA NA -ARL6IP5--ARIH2 BS_FAQQ0GCQ -0.0299586178957712 -0.00623184646305169 NA NA no change no change NA NA 3:69085223 3:48985701 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr3:20.10Mb]],inversion/3'-3' ARL6IP5 NA ARIH2 NA TumorSuppressorGene NA NA NA NA -ARMC3--ARMC3 BS_P78SMRBS 5.66857829684851 5.66857829684851 NA NA differentially expressed differentially expressed NA NA 10:23008931 10:22981340 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.11Mb]],duplication/non-canonical_splicing ARMC3 NA ARMC3 NA NA NA NA NA NA -ARMC4--ARMC4 BS_AG3D3435 5.49800014027119 5.49800014027119 NA NA differentially expressed differentially expressed NA NA 10:27907663 10:27971313 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.19Mb]],duplication/non-canonical_splicing ARMC4 NA ARMC4 NA NA NA NA NA NA -ARMC4--ARMC4 BS_WRQHPSXQ 2.87177615441198 2.87177615441198 NA NA differentially expressed differentially expressed NA NA 10:27860625 10:27944962 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.19Mb]],duplication/non-canonical_splicing ARMC4 NA ARMC4 NA NA NA NA NA NA -ARMC9--ARMC9 BS_39CGACC7 -0.16032469061264 -0.16032469061264 NA NA no change no change NA NA 2:231331897 2:231282059 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing ARMC9 NA ARMC9 NA NA NA NA NA NA -ARMC9--ARMC9 BS_92VDQ0NE 0.517613295317126 0.517613295317126 NA NA no change no change NA NA 2:231331897 2:231282059 ARRIBA in-frame 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing ARMC9 NA ARMC9 NA NA NA NA NA NA -ARMC9--ARMC9 BS_C7N3J4NW 1.68821943443891 1.68821943443891 NA NA no change no change NA NA 2:231331897 2:231282059 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing ARMC9 NA ARMC9 NA NA NA NA NA NA -ARMC9--ARMC9 BS_CW9QV8AG 1.32904478298299 1.32904478298299 NA NA no change no change NA NA 2:231331897 2:231282059 ARRIBA in-frame 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing ARMC9 NA ARMC9 NA NA NA NA NA NA -ARMC9--ARMC9 BS_VPMKHW9X 1.20360383174034 1.20360383174034 NA NA no change no change NA NA 2:231331897 2:231282059 ARRIBA in-frame 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing ARMC9 NA ARMC9 NA NA NA NA NA NA -ARMC9--ARMC9 BS_ZR96A4FH 1.07987814778917 1.07987814778917 NA NA no change no change NA NA 2:231331897 2:231282059 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing ARMC9 NA ARMC9 NA NA NA NA NA NA -ARMC9--ARMC9 BS_ZZPBANDD 1.02362682948664 1.02362682948664 NA NA no change no change NA NA 2:231331897 2:231282059 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing ARMC9 NA ARMC9 NA NA NA NA NA NA -ARNT2--AC068492.1(32327)/CXCR4(3509) BS_4B0BAVTX 0.148475183650438 -0.411495052108292 NA 1.20638714030116 no change no change NA no change 15:80404546 2:136110840 ARRIBA frameshift 9 0 high [],translocation ARNT2 NA AC068492.1 CXCR4 TranscriptionFactor NA NA CosmicCensus NA -ARNTL--BTBD10 BS_N6NE6B3W 0.289654128010894 1.89071152180606 NA NA no change no change NA NA 11:13384499 11:13421838 ARRIBA other 2 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_INVERSION:+:-:[735]],duplication/3'-3' ARNTL NA BTBD10 NA TumorSuppressorGene, TranscriptionFactor NA NA NA TCGAFusion -ARNTL--BTBD10 BS_N6NE6B3W 0.289654128010894 1.89071152180606 NA NA no change no change NA NA 11:13310059 11:13445181 ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_INVERSION:+:-:[735]],inversion ARNTL NA BTBD10 NA TumorSuppressorGene, TranscriptionFactor NA NA NA TCGAFusion -ARPP21--ARPP21 BS_T1W4JA94 -0.864454326328622 -0.864454326328622 NA NA no change no change NA NA 3:35743965 3:35729303 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr3:0.16Mb]],duplication/non-canonical_splicing ARPP21 NA ARPP21 NA NA NA NA NA NA -ARSG--ARSG BS_7B89YR6K 0.995779671090381 0.995779671090381 NA NA no change no change NA NA 17:68370524 17:68306943 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.16Mb]],duplication/non-canonical_splicing ARSG NA ARSG NA NA NA NA NA NA -ASAP1--AC091163.3(34362)/AC091163.1(16154) BS_HZRM07TW 1.96060489690533 NA NA NA no change NA NA NA 8:130358017 8:46906407 ARRIBA frameshift 112 8 high [],inversion ASAP1 NA AC091163.3 AC091163.1 NA NA NA NA NA -ASAP1--AC104989.1(4574)/AC105029.1(94825) BS_R439VVPK 2.87020400338949 NA NA NA differentially expressed NA NA NA 8:130167536 8:48199201 ARRIBA frameshift 18 1 high [],deletion ASAP1 NA AC104989.1 AC105029.1 NA NA NA NA NA -ASAP1--LINC00964 BS_WMEHNDSK 5.994075986954 7.85911897864503 NA NA differentially expressed differentially expressed NA NA 8:130443460 8:124941463 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr8:5.10Mb]],inversion ASAP1 NA LINC00964 NA NA NA NA NA NA -ASAP1--LINC00964 BS_WMEHNDSK 5.994075986954 7.85911897864503 NA NA differentially expressed differentially expressed NA NA 8:130401885 8:124941463 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:5.10Mb]],inversion ASAP1 NA LINC00964 NA NA NA NA NA NA -ASAP1--NDRG1 BS_WMEHNDSK 5.994075986954 2.82062245643953 NA NA differentially expressed differentially expressed NA NA 8:130358017 8:133284329 ARRIBA in-frame 601 131 high [INTRACHROMOSOMAL[chr8:2.79Mb]],duplication ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -ASAP1--NDRG1 BS_WMEHNDSK 5.994075986954 2.82062245643953 NA NA differentially expressed differentially expressed NA NA 8:130401885 8:133284329 ARRIBA frameshift 47 15 high [INTRACHROMOSOMAL[chr8:2.79Mb]],duplication ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -ASAP1--NDRG1 BS_WMEHNDSK 5.994075986954 2.82062245643953 NA NA differentially expressed differentially expressed NA NA 8:130358017 8:133264652 ARRIBA in-frame 48 22 medium [INTRACHROMOSOMAL[chr8:2.79Mb]],duplication ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -ASAP1--NDRG1 BS_WMEHNDSK 5.994075986954 2.82062245643953 NA NA differentially expressed differentially expressed NA NA 8:130401885 8:133280267 ARRIBA frameshift 1 6 medium [INTRACHROMOSOMAL[chr8:2.79Mb]],duplication ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -ASAP1--NDRG1 BS_WMEHNDSK 5.994075986954 2.82062245643953 NA NA differentially expressed differentially expressed NA NA 8:130443460 8:133284329 ARRIBA other 2 4 medium [INTRACHROMOSOMAL[chr8:2.79Mb]],duplication ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -ASAP1--NDRG1 BS_WMEHNDSK 5.994075986954 2.82062245643953 NA NA differentially expressed differentially expressed NA NA 8:130401885 8:133264652 ARRIBA frameshift 2 3 medium [INTRACHROMOSOMAL[chr8:2.79Mb]],duplication ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -ASAP1--NDRG1 BS_WMEHNDSK 5.994075986954 2.82062245643953 NA NA differentially expressed differentially expressed NA NA 8:130443460 8:133264652 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr8:2.79Mb]],duplication ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -ASAP1--SLC45A4 BS_HZRM07TW 1.96060489690533 0.624422734094889 NA NA no change no change NA NA 8:130443460 8:141254629 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr8:10.76Mb]],duplication ASAP1 NA SLC45A4 NA NA NA NA NA NA -ASAP1--SLC45A4 BS_HZRM07TW 1.96060489690533 0.624422734094889 NA NA no change no change NA NA 8:130443460 8:141221765 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:10.76Mb]],duplication ASAP1 NA SLC45A4 NA NA NA NA NA NA -ASAP1--SLC45A4 BS_HZRM07TW 1.96060489690533 0.624422734094889 NA NA no change no change NA NA 8:130443460 8:141219829 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:10.76Mb]],duplication ASAP1 NA SLC45A4 NA NA NA NA NA NA -ASAP1--TSPY16P(6532)/AC017019.1(17981) BS_WKESC3XN 4.09513689669838 NA NA NA differentially expressed NA NA NA 8:130358017 Y:9647248 ARRIBA frameshift 16 3 high [],translocation ASAP1 NA TSPY16P AC017019.1 NA NA NA NA NA -ASAP2--AC018685.1(55082)/AC011995.2(48225) BS_Z8F3GM85 4.25683195403212 3.39214383020285 NA NA differentially expressed differentially expressed NA NA 2:9297445 2:2786039 ARRIBA frameshift 2 0 low [],inversion ASAP2 NA AC018685.1 AC011995.2 NA NA NA NA NA -ASAP2--OXNAD1 BS_C41DJZ1F 4.61944347523528 3.52917742224203 NA NA differentially expressed differentially expressed NA NA 2:9393647 3:16337112 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr2--chr3]],translocation ASAP2 NA OXNAD1 NA NA NA NA NA NA -ASAP3--HTR1D(16140)/AL109936.1(33896) BS_MN5XVP5A -2.02753194991121 3.11915084052667 NA NA differentially expressed differentially expressed NA NA 1:23484005 1:23210869 ARRIBA frameshift 2 0 medium [],inversion ASAP3 NA HTR1D AL109936.1 NA NA NA NA NA -ASAP3--SLC12A6 BS_WG203ECV 3.60319774280915 2.00399588731424 NA NA differentially expressed differentially expressed NA NA 1:23437426 15:34240831 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr1--chr15]],translocation ASAP3 NA SLC12A6 NA NA NA NA NA NA -ASB7--SEPT10P1 BS_91VYM11A 3.66479903116433 49.3934218013524 NA NA differentially expressed differentially expressed NA NA 15:100629732 8:56477901 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr15--chr8]],translocation ASB7 NA SEPT10P1 NA NA NA NA NA NA -ASB7--SEPT10P1 BS_H0QWRJE2 3.4771612722488 55.9489797085607 NA NA differentially expressed differentially expressed NA NA 15:100629732 8:56477901 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr15--chr8]],translocation ASB7 NA SEPT10P1 NA NA NA NA NA NA -ASB7--SEPT10P1 BS_TJTEF70D 3.04129812327805 49.612369766886 NA NA differentially expressed differentially expressed NA NA 15:100629732 8:56477901 ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr15--chr8]],translocation ASB7 NA SEPT10P1 NA NA NA NA NA NA -ASCC1--CCAR1 BS_MX23ZY0Y 1.89484380158755 1.37454799915113 NA NA no change no change NA NA 10:72196811 10:68761007 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr10:3.30Mb]],inversion ASCC1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA -ASCC1--CCAR1 BS_MX23ZY0Y 1.89484380158755 1.37454799915113 NA NA no change no change NA NA 10:72203427 10:68761007 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:3.30Mb]],inversion ASCC1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA -ASCC1--CTNNA3 BS_MX23ZY0Y 1.89484380158755 -0.734738311859846 NA NA no change no change NA NA 10:72128082 10:66595835 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr10:4.40Mb]],inversion/5'-5' ASCC1 NA CTNNA3 NA NA TumorSuppressorGene NA NA NA -ASCC1--CTNNA3 BS_P9JP6JFA 1.08999020279916 -1.4159588098489 NA NA no change no change NA NA 10:72128082 10:66595835 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr10:4.40Mb]],inversion/5'-5' ASCC1 NA CTNNA3 NA NA TumorSuppressorGene NA NA NA -ASH1L--C11orf74 BS_JS95PE0J 2.96984847664842 -0.429610270594167 NA NA differentially expressed no change NA NA 1:155395459 11:36604911 ARRIBA frameshift 11 1 high [INTERCHROMOSOMAL[chr1--chr11]],translocation/5'-5' ASH1L NA C11orf74 NA TranscriptionFactor NA NA NA NA -ASH1L--CADM3 BS_W60RQAKK 2.87945751222729 -0.696373411576237 NA NA differentially expressed no change NA NA 1:155438327 1:159199751 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr1:3.61Mb]],inversion ASH1L NA CADM3 NA TranscriptionFactor TumorSuppressorGene NA NA NA -ASH2L--LIN54 BS_YETBN0RQ 1.39941289414824 2.94815823569642 NA NA no change differentially expressed NA NA 8:38122348 4:82931056 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr8--chr4]],translocation ASH2L NA LIN54 NA NA TranscriptionFactor NA NA NA -ASRGL1--RHOG BS_6MZ7FRZH -2.90718477783423 -0.0679336513302681 NA NA differentially expressed no change NA NA 11:62338167 11:3828206 ARRIBA in-frame 12 0 high [INTRACHROMOSOMAL[chr11:58.50Mb]],inversion ASRGL1 NA RHOG NA NA Oncogene NA NA NA -ASS1P12--APTX BS_7BTZQKYY -1.3384194857765 0.918479130902715 NA NA no change no change NA NA 9:32946753 9:32989895 ARRIBA other 1 3 medium [INTRACHROMOSOMAL[chr9:0.03Mb],LOCAL_INVERSION:+:-:[25384]],duplication/3'-3' ASS1P12 NA APTX NA NA NA NA NA NA -ASS1P12(19454)/APTX(5930)--APTX BS_7BTZQKYY -1.3384194857765 0.918479130902715 0.918479130902715 NA no change no change no change NA 9:32966676 9:32989895 ARRIBA other 8 0 medium [],duplication ASS1P12 APTX APTX NA NA NA NA NA NA -ASS1P12(19454)/APTX(5930)--APTX BS_E4F1D721 -1.10198264297618 0.924336727810182 0.924336727810182 NA no change no change no change NA 9:32966676 9:32989895 ARRIBA other 4 0 medium [],duplication ASS1P12 APTX APTX NA NA NA NA NA NA -ASS1P12(19454)/APTX(5930)--APTX BS_KXH37MPN -1.25882814129248 0.333364231395266 0.333364231395266 NA no change no change no change NA 9:32966676 9:32989895 ARRIBA other 3 0 medium [],duplication ASS1P12 APTX APTX NA NA NA NA NA NA -ASS1P12(19454)/APTX(5930)--APTX BS_QPPPGYP4 -1.10198264297618 -0.155626559741251 -0.155626559741251 NA no change no change no change NA 9:32966676 9:32989895 ARRIBA other 3 0 medium [],duplication ASS1P12 APTX APTX NA NA NA NA NA NA -ASTN2--ANKS6 BS_8ZD6J47V 2.21975426045007 1.41951051617803 NA NA differentially expressed no change NA NA 9:116618324 9:98784876 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:17.63Mb]],deletion ASTN2 NA ANKS6 NA Oncogene NA NA NA NA -ASXL1--SNRPN BS_WGK8ZMVA 0.789697778244528 -1.88600078327376 NA NA no change no change NA NA 20:32369123 15:24912363 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr20--chr15]],translocation ASXL1 NA SNRPN NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -ASXL1--SNRPN BS_WGK8ZMVA 0.789697778244528 -1.88600078327376 NA NA no change no change NA NA 20:32371874 15:24886516 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr20--chr15]],translocation ASXL1 NA SNRPN NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -ASXL2--ASXL2 BS_MQCKXD60 9.26657257636877 9.26657257636877 NA NA differentially expressed differentially expressed NA NA 2:25799385 2:25758511 ARRIBA frameshift 2 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.14Mb]],inversion/5'-5' ASXL2 NA ASXL2 NA CosmicCensus CosmicCensus NA NA NA -ASXL2--SPHKAP(144424)/AC074019.1(26051) BS_RRAEQZ97 7.13284054132409 0.644300776000902 NA NA differentially expressed no change NA NA 2:25878166 2:228326069 ARRIBA frameshift 3 0 high [],duplication ASXL2 NA SPHKAP AC074019.1 CosmicCensus NA NA NA NA -ASXL3--ASXL3 BS_WGK8ZMVA 2.99638679658499 2.99638679658499 NA NA differentially expressed differentially expressed NA NA 18:33683568 18:33644894 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.17Mb]],duplication/non-canonical_splicing ASXL3 NA ASXL3 NA NA NA NA NA NA -ATAD5--STX8 BS_FCAKKZ20 3.57964502460627 -0.825681646134818 NA NA differentially expressed no change NA NA 17:30857112 17:9525996 ARRIBA frameshift 10 1 high [INTRACHROMOSOMAL[chr17:21.26Mb]],duplication/5'-5' ATAD5 NA STX8 NA NA NA NA NA NA -ATAD5--STX8 BS_TW8DQH8J 3.42955235397715 -0.652951008533623 NA NA differentially expressed no change NA NA 17:30857112 17:9525996 ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr17:21.26Mb]],duplication/5'-5' ATAD5 NA STX8 NA NA NA NA NA NA -ATF1--EWSR1 BS_QBR4WCQ2 3.21241829929844 -0.992620722535862 NA NA differentially expressed no change NA NA 12:50780238 22:29296239 ARRIBA in-frame 15 0 high [ChimerPub,ChimerKB,INTERCHROMOSOMAL[chr12--chr22]],translocation ATF1 NA EWSR1 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA -ATF2--AC104088.1(8897)/AC078883.4(91173) BS_MQCKXD60 -0.53753845082687 15.8294970965139 NA -0.31833650306979 no change differentially expressed NA no change 2:175080660 2:172332634 ARRIBA frameshift 3 0 high [],deletion ATF2 NA AC104088.1 AC078883.4 Oncogene, TranscriptionFactor NA NA NA NA -ATF6--ATF6 BS_TE0GVDNG 2.59404355514992 2.59404355514992 NA NA differentially expressed differentially expressed NA NA 1:161863312 1:161791408 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.20Mb]],duplication/non-canonical_splicing ATF6 NA ATF6 NA TranscriptionFactor TranscriptionFactor NA NA NA -ATF6--RPL31P13(45844)/AL592402.1(17380) BS_P0QF87WC 2.91758765717543 -0.124958934136626 NA NA differentially expressed no change NA NA 1:161912380 1:213474921 ARRIBA frameshift 3 0 high [],deletion ATF6 NA RPL31P13 AL592402.1 TranscriptionFactor NA NA NA NA -ATF6B--PGAM5 BS_3BDAG9YN -0.31478938453304 4.20810341563799 NA NA no change differentially expressed NA NA 6:32120771 12:132720678 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr6--chr12]],translocation ATF6B NA PGAM5 NA TranscriptionFactor NA NA NA NA -ATF7IP--DSE BS_QRDT19KS 5.39627146338839 5.48254664058918 NA NA differentially expressed differentially expressed NA NA 12:14444584 6:116260527 ARRIBA other 1 2 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation ATF7IP NA DSE NA Oncogene NA NA NA NA -ATF7IP--LINC02484(341210)/AC093689.1(46649) BS_MN5XVP5A 5.93401983321037 NA NA NA differentially expressed NA NA NA 12:14481185 4:34610957 ARRIBA frameshift 9 0 high [],translocation ATF7IP NA LINC02484 AC093689.1 Oncogene NA NA NA NA -ATF7IP--LINC02484(341210)/AC093689.1(46649) BS_RCCN63K6 6.48188579564502 NA NA NA differentially expressed NA NA NA 12:14481185 4:34610957 ARRIBA frameshift 4 0 medium [],translocation ATF7IP NA LINC02484 AC093689.1 Oncogene NA NA NA NA -ATG13--AMBRA1 BS_MN5XVP5A 1.6813919116385 1.9441121509904 NA NA no change no change NA NA 11:46650317 11:46548500 ARRIBA frameshift 4 0 high [CCLE,ChimerSeq,INTRACHROMOSOMAL[chr11:0.02Mb],LOCAL_INVERSION:+:-:[23402]],inversion ATG13 NA AMBRA1 NA NA NA NA NA NA -ATG13--AMBRA1 BS_RCCN63K6 0.976370946451392 1.66256745932569 NA NA no change no change NA NA 11:46650317 11:46548500 ARRIBA frameshift 6 0 high [CCLE,ChimerSeq,INTRACHROMOSOMAL[chr11:0.02Mb],LOCAL_INVERSION:+:-:[23402]],inversion ATG13 NA AMBRA1 NA NA NA NA NA NA -ATG14--LINC01500 BS_K17VQECG 0.312325333582391 9.17902286110947 NA NA no change differentially expressed NA NA 14:55397372 14:58910263 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr14:3.42Mb]],inversion ATG14 NA LINC01500 NA NA NA NA NA NA -ATG4C(1085)/AC099794.1(29411)--ATG4C BS_N6NE6B3W 1.80135620009905 1.80135620009905 NA NA no change no change NA NA 1:62866598 1:62816575 ARRIBA other 1 0 low [],duplication ATG4C AC099794.1 ATG4C NA NA NA NA NA NA -ATG4C(1085)/AC099794.1(29411)--ATG4C BS_TBWYAFSM 1.89765802655277 1.89765802655277 NA NA no change no change NA NA 1:62866598 1:62803719 ARRIBA other 4 0 medium [],duplication ATG4C AC099794.1 ATG4C NA NA NA NA NA NA -ATG4C(1085)/AC099794.1(29411)--ATG4C BS_ZZWMD6FA 0.203401223281571 0.203401223281571 NA NA no change no change NA NA 1:62866598 1:62803719 ARRIBA other 3 0 medium [],duplication ATG4C AC099794.1 ATG4C NA NA NA NA NA NA -ATG4D--AC012618.3 BS_K17VQECG 0.327487941414827 NA NA NA no change NA NA NA 19:10544325 19:12234713 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr19:1.64Mb]],deletion ATG4D NA AC012618.3 NA NA NA NA NA NA -ATG4D--AC012618.3 BS_K17VQECG 0.327487941414827 NA NA NA no change NA NA NA 19:10545130 19:12234713 ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr19:1.64Mb]],deletion ATG4D NA AC012618.3 NA NA NA NA NA NA -ATG4D--AC012618.3 BS_K17VQECG 0.327487941414827 NA NA NA no change NA NA NA 19:10544325 19:12237090 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr19:1.64Mb]],deletion ATG4D NA AC012618.3 NA NA NA NA NA NA -ATG4D--AC012618.3 BS_K17VQECG 0.327487941414827 NA NA NA no change NA NA NA 19:10547115 19:12234713 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr19:1.64Mb]],deletion ATG4D NA AC012618.3 NA NA NA NA NA NA -ATG7--AC046136.1 BS_FAQQ0GCQ 2.94585906770536 NA NA NA differentially expressed NA NA NA 3:11380052 3:115302568 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:103.69Mb]],inversion/3'-3' ATG7 NA AC046136.1 NA NA NA NA NA NA -ATG7--ATG7 BS_1EBQ3T20 2.34915766685143 2.34915766685143 NA NA differentially expressed differentially expressed NA NA 3:11426926 3:11298686 ARRIBA frameshift 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr3:0.29Mb]],duplication/non-canonical_splicing ATG7 NA ATG7 NA NA NA NA NA NA -ATG9B--AL353633.1(308064)/PTMAP5(79440) BS_XJTW0P8P 0.267834079598357 NA NA 2.7822608008389 no change NA NA differentially expressed 7:151017871 13:81610471 ARRIBA frameshift 3 0 medium [],translocation ATG9B NA AL353633.1 PTMAP5 NA NA NA NA NA -ATM--ATP2B2 BS_07ANYSYQ 1.65642307105557 1.09393953668131 NA NA no change no change NA NA 11:108347365 3:10329125 ARRIBA frameshift 7 0 high [INTERCHROMOSOMAL[chr11--chr3]],translocation ATM NA ATP2B2 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA -ATP10B--ATP10B BS_GWCRMKE6 2.28988280184207 2.28988280184207 NA NA differentially expressed differentially expressed NA NA 5:160783841 5:160785803 ARRIBA other 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr5:0.29Mb]],duplication ATP10B NA ATP10B NA NA NA NA NA NA -ATP10D--ATP10D BS_Q79NP5YY 4.05963985371237 4.05963985371237 NA NA differentially expressed differentially expressed NA NA 4:47576973 4:47554726 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.11Mb]],duplication/non-canonical_splicing ATP10D NA ATP10D NA NA NA NA NA NA -ATP10D--ATP10D BS_TGS109T3 7.4572022281041 7.4572022281041 NA NA differentially expressed differentially expressed NA NA 4:47536938 4:47523012 ARRIBA frameshift 42 5 low [SELFIE,INTRACHROMOSOMAL[chr4:0.11Mb]],duplication/non-canonical_splicing ATP10D NA ATP10D NA NA NA NA NA NA -ATP11A--SLX4IP BS_Z8YZ6QGS 4.15816818281776 10.1552995659159 NA NA differentially expressed differentially expressed NA NA 13:112690455 20:10556231 ARRIBA in-frame 13 0 high [INTERCHROMOSOMAL[chr13--chr20]],translocation ATP11A NA SLX4IP NA NA NA NA NA NA -ATP11A--SLX4IP BS_Z8YZ6QGS 4.15816818281776 10.1552995659159 NA NA differentially expressed differentially expressed NA NA 13:112690455 20:10458176 ARRIBA frameshift 9 1 high [INTERCHROMOSOMAL[chr13--chr20]],translocation ATP11A NA SLX4IP NA NA NA NA NA NA -ATP11A--SLX4IP BS_Z8YZ6QGS 4.15816818281776 10.1552995659159 NA NA differentially expressed differentially expressed NA NA 13:112690455 20:10598675 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr13--chr20]],translocation ATP11A NA SLX4IP NA NA NA NA NA NA -ATP11A--SLX4IP BS_Z8YZ6QGS 4.15816818281776 10.1552995659159 NA NA differentially expressed differentially expressed NA NA 13:112690455 20:10560700 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr13--chr20]],translocation ATP11A NA SLX4IP NA NA NA NA NA NA -ATP11B--ATP11B BS_G63HYD6N 1.09454771755855 1.09454771755855 NA NA no change no change NA NA 3:182913994 3:182885951 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.13Mb]],duplication/non-canonical_splicing ATP11B NA ATP11B NA NA NA NA NA NA -ATP11B--ATP11B BS_XF0ZX2B3 1.81573766640824 1.81573766640824 NA NA no change no change NA NA 3:182913994 3:182885951 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.13Mb]],duplication/non-canonical_splicing ATP11B NA ATP11B NA NA NA NA NA NA -ATP2B1--AC007115.1(48254)/AC025035.1(120000) BS_Q9V7A95C 0.612338117821549 NA NA NA no change NA NA NA 12:89708596 12:91242196 ARRIBA other 59 3 high [],inversion ATP2B1 NA AC007115.1 AC025035.1 NA NA NA NA NA -ATP2B1--AC084365.1(183969)/AC112481.1(2485) BS_Q9V7A95C 0.612338117821549 NA NA NA no change NA NA NA 12:89708596 12:90806791 ARRIBA other 4 1 medium [],duplication ATP2B1 NA AC084365.1 AC112481.1 NA NA NA NA NA -ATP2B1--CCER1 BS_Q9V7A95C 0.612338117821549 170.350406674511 NA NA no change differentially expressed NA NA 12:89708596 12:90905864 ARRIBA other 21 1 medium [INTRACHROMOSOMAL[chr12:1.20Mb]],duplication ATP2B1 NA CCER1 NA NA NA NA NA NA -ATP2B1--CCER1 BS_Q9V7A95C 0.612338117821549 170.350406674511 NA NA no change differentially expressed NA NA 12:89709219 12:90905864 ARRIBA other 10 0 medium [INTRACHROMOSOMAL[chr12:1.20Mb]],duplication ATP2B1 NA CCER1 NA NA NA NA NA NA -ATP2B1--DCN BS_Q9V7A95C 0.612338117821549 4.61740159029087 NA NA no change differentially expressed NA NA 12:89708596 12:91169765 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr12:1.43Mb]],inversion/5'-5' ATP2B1 NA DCN NA NA TumorSuppressorGene NA NA NA -ATP2B1--DCN(9522)/AC007115.1(1064) BS_Q9V7A95C 0.612338117821549 4.61740159029087 NA NA no change differentially expressed NA NA 12:89708596 12:91192645 ARRIBA other 278 18 high [],inversion ATP2B1 NA DCN AC007115.1 NA TumorSuppressorGene NA NA NA -ATP2B1-AS1--DCN(9522)/AC007115.1(1064) BS_Q9V7A95C NA 4.61740159029087 NA NA NA differentially expressed NA NA 12:89709219 12:91192645 ARRIBA other 10 0 medium [],inversion ATP2B1-AS1 NA DCN AC007115.1 NA TumorSuppressorGene NA NA NA -ATP2C1--AC110716.1(26947)/AC016933.1(120931) BS_7GJT4A6A 3.0160982253574 NA NA NA differentially expressed NA NA NA 3:130941699 3:139716289 ARRIBA frameshift 9 1 high [],inversion ATP2C1 NA AC110716.1 AC016933.1 NA NA NA NA NA -ATP2C1--NMNAT3 BS_7GJT4A6A 3.0160982253574 5.39728523923254 NA NA differentially expressed differentially expressed NA NA 3:130941699 3:139638062 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr3:8.54Mb]],inversion ATP2C1 NA NMNAT3 NA NA NA NA NA NA -ATP5G1P3(25899)/LINC01391(19333)--MYLK BS_FAQQ0GCQ 0.586391727592701 -0.969933472130383 0.772337274837895 NA no change no change no change NA 3:138915856 3:123740001 ARRIBA other 3 0 high [],deletion ATP5G1P3 LINC01391 MYLK NA NA Kinase NA NA NA -ATP5HP2(3973)/CARM1P1(2296)--CARM1P1 BS_EFE4YEK3 13.9310846454195 11.7898477711247 11.7898477711247 NA differentially expressed differentially expressed differentially expressed NA 9:2904777 9:3014177 ARRIBA other 1 0 low [],duplication ATP5HP2 CARM1P1 CARM1P1 NA NA NA NA NA NA -ATP5HP2(3973)/CARM1P1(2296)--CARM1P1 BS_HF3RNN2T 13.9193005348669 11.8600322942497 11.8600322942497 NA differentially expressed differentially expressed differentially expressed NA 9:2904777 9:3014177 ARRIBA other 4 0 high [],duplication ATP5HP2 CARM1P1 CARM1P1 NA NA NA NA NA NA -ATP5HP2(3973)/CARM1P1(2296)--CARM1P1 BS_QEYPFYHD 7.98770545328112 10.8944285053518 10.8944285053518 NA differentially expressed differentially expressed differentially expressed NA 9:2904777 9:2948282 ARRIBA other 4 0 low [],duplication ATP5HP2 CARM1P1 CARM1P1 NA NA NA NA NA NA -ATP6AP1L(156477)/AC026782.1(2408)--XRCC4 BS_KVNGNETA -0.507248240813647 0.667811108661765 NA NA no change no change NA NA 5:82543454 5:83104910 ARRIBA other 2 1 high [],deletion ATP6AP1L AC026782.1 XRCC4 NA NA NA NA NA NA -ATP6AP1L(156477)/AC026782.1(2408)--XRCC4 BS_M84H3KXA -2.03416680650606 1.24098757804618 NA NA differentially expressed no change NA NA 5:82543454 5:83104910 ARRIBA other 1 1 medium [],deletion ATP6AP1L AC026782.1 XRCC4 NA NA NA NA NA NA -ATP6V0A1--AC018521.7 BS_MN5XVP5A -0.720726720926409 NA NA NA no change NA NA NA 17:42501304 17:47880847 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr17:5.36Mb]],deletion/5'-5' ATP6V0A1 NA AC018521.7 NA NA NA NA NA NA -ATP6V0A1--AC018521.7 BS_RCCN63K6 -0.808734814397687 NA NA NA no change NA NA NA 17:42501304 17:47880847 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr17:5.36Mb]],deletion/5'-5' ATP6V0A1 NA AC018521.7 NA NA NA NA NA NA -ATP6V0D1--WARS BS_6JHXXVR7 -0.136516706530983 0.83857104454345 NA NA no change no change NA NA 16:67480957 14:100361921 ARRIBA frameshift 24 5 high [INTERCHROMOSOMAL[chr16--chr14]],translocation ATP6V0D1 NA WARS NA NA NA NA NA NA -ATP6V0E2--LINC01510(18942)/MET(38628) BS_KND4B5CW -4.22014736915816 17.0381177552317 NA 5.57130280655861 differentially expressed differentially expressed NA differentially expressed 7:149875645 7:116633762 ARRIBA frameshift 2 0 high [],inversion ATP6V0E2 NA LINC01510 MET NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA -ATP6V1G1(6593)/TMEM268(6240)--C9orf135 BS_A0DYVX9J 0.368767755367955 3.70586894264502 NA NA no change differentially expressed NA NA 9:114604966 9:69856555 ARRIBA other 5 1 high [],inversion ATP6V1G1 TMEM268 C9orf135 NA NA NA NA NA NA -ATP6V1G2-DDX39B--LRFN2 BS_GW0GKWMS -0.53022833657916 0.987247181010962 NA NA no change no change NA NA 6:31540322 6:40433131 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr6:8.84Mb]],duplication ATP6V1G2-DDX39B NA LRFN2 NA NA NA NA NA NA -ATP8A1--AC105389.3 BS_YCREDZTJ -3.4617676217415 NA NA NA differentially expressed NA NA NA 4:42656825 4:41766293 ARRIBA frameshift 38 1 high [INTRACHROMOSOMAL[chr4:0.58Mb]],deletion/5'-5' ATP8A1 NA AC105389.3 NA NA NA NA NA NA -ATP8A1--GRXCR1 BS_YCREDZTJ -3.4617676217415 32.9450437146888 NA NA differentially expressed differentially expressed NA NA 4:42656825 4:43020354 ARRIBA frameshift 14 1 high [INTRACHROMOSOMAL[chr4:0.24Mb]],inversion ATP8A1 NA GRXCR1 NA NA NA NA NA NA -ATP8A1--GRXCR1 BS_YCREDZTJ -3.4617676217415 32.9450437146888 NA NA differentially expressed differentially expressed NA NA 4:42656825 4:43030361 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr4:0.24Mb]],inversion ATP8A1 NA GRXCR1 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_063ERW0R 1.10272348926374 1.10272348926374 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_0T17SY47 0.0685347882829528 0.0685347882829528 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_258RRGDM 1.04203727187369 1.04203727187369 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_2XD3MNKD -0.507828731585779 -0.507828731585779 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_3T6X4BPC 0.0185154939898651 0.0185154939898651 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_6MY8W3H0 1.76248808158979 1.76248808158979 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 26 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_6WP1FHTE -0.400591013860203 -0.400591013860203 NA NA no change no change NA NA 13:25589699 13:25570767 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_7FWZ518S 1.52115282968882 1.52115282968882 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_7XRN3CFX 0.228059980928925 0.228059980928925 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_9F09XV62 -0.386976400928498 -0.386976400928498 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_AMZ70B6F 0.169301340387063 0.169301340387063 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_CREQ97QC 1.89240630879594 1.89240630879594 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 17 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_ERJAJ0KA -0.237402560767475 -0.237402560767475 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_KPT2WPHW 0.913173068438013 0.913173068438013 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_KVNGNETA 0.924831601279901 0.924831601279901 NA NA no change no change NA NA 13:25564031 13:25529999 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_MF47B9ZW 1.21941606351323 1.21941606351323 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_N6NE6B3W 2.09177819921977 2.09177819921977 NA NA differentially expressed differentially expressed NA NA 13:25589699 13:25537988 ARRIBA in-frame 34 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_NDN62H0S 3.93278659256704 3.93278659256704 NA NA differentially expressed differentially expressed NA NA 13:25589699 13:25570767 ARRIBA in-frame 39 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_NT9NZYFD -0.363508876750987 -0.363508876750987 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_S69QZAJR 0.472451207926239 0.472451207926239 NA NA no change no change NA NA 13:25589699 13:25570767 ARRIBA in-frame 5 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_SDA4RMMG 0.132201189288364 0.132201189288364 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_SFKZSJN1 0.945541433284852 0.945541433284852 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_VMMJYN8Z 1.38074938909453 1.38074938909453 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 18 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_W18SF91A -1.02536661035307 -1.02536661035307 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_WCRKYV0T 1.32092668520575 1.32092668520575 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_X0F9AYEC 0.757230517097211 0.757230517097211 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_Z6MC4N8D 1.05044418346435 1.05044418346435 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_ZA9XT151 0.553626749471063 0.553626749471063 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8A2--ATP8A2 BS_ZR96A4FH 0.985939682181644 0.985939682181644 NA NA no change no change NA NA 13:25774959 13:25769046 ARRIBA frameshift 31 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA -ATP8B4--ATP8B4 BS_JXNZYGCR 2.9029584424946 2.9029584424946 NA NA differentially expressed differentially expressed NA NA 15:50038768 15:50165536 ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.32Mb]],duplication ATP8B4 NA ATP8B4 NA NA NA NA NA NA -ATP9A--PMEPA1 BS_6DCSD5Y6 -0.361131443028112 2.63654902726142 NA NA no change differentially expressed NA NA 20:51768302 20:57659697 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr20:5.88Mb]],duplication ATP9A NA PMEPA1 NA NA Oncogene NA NA NA -ATP9B--AC068473.1 BS_NJ4WPQVK 1.06728828609122 NA NA NA no change NA NA NA 18:79096649 18:79660804 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr18:0.26Mb]],inversion ATP9B NA AC068473.1 NA NA NA NA NA NA -ATP9B--ATP9B BS_3NNQ6PSB 1.48937578883024 1.48937578883024 NA NA no change no change NA NA 18:79307234 18:79193183 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_6MY8W3H0 2.14553060697888 2.14553060697888 NA NA differentially expressed differentially expressed NA NA 18:79307234 18:79193183 ARRIBA in-frame 15 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_7XRN3CFX 0.686524785284355 0.686524785284355 NA NA no change no change NA NA 18:79253541 18:79193183 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_AJ6X83G5 1.37341819339801 1.37341819339801 NA NA no change no change NA NA 18:79307234 18:79193183 ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_C6ZZ3FY5 0.572445819687496 0.572445819687496 NA NA no change no change NA NA 18:79307234 18:79193183 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_H3Y8FWHV 0.618190059790932 0.618190059790932 NA NA no change no change NA NA 18:79253541 18:79176813 ARRIBA frameshift 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_HCP5C912 1.89952072504104 1.89952072504104 NA NA no change no change NA NA 18:79307234 18:79193183 ARRIBA in-frame 24 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_K5802F84 2.01763729922809 2.01763729922809 NA NA differentially expressed differentially expressed NA NA 18:79307234 18:79193183 ARRIBA frameshift 22 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_KM2EX0K6 1.29504993786745 1.29504993786745 NA NA no change no change NA NA 18:79253541 18:79193183 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_KPT2WPHW 1.6543338495394 1.6543338495394 NA NA no change no change NA NA 18:79307234 18:79193183 ARRIBA frameshift 13 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_NVKGSMXS 0.702759111279533 0.702759111279533 NA NA no change no change NA NA 18:79307234 18:79193183 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_P44PE00R 0.280074640946363 0.280074640946363 NA NA no change no change NA NA 18:79307234 18:79193183 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_QV51J756 1.17588410949569 1.17588410949569 NA NA no change no change NA NA 18:79307234 18:79193183 ARRIBA in-frame 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_R7HZCZ8B 0.347004662749218 0.347004662749218 NA NA no change no change NA NA 18:79307234 18:79193183 ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_TDEFAPNH 0.768977441603334 0.768977441603334 NA NA no change no change NA NA 18:79253541 18:79193183 ARRIBA frameshift 6 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_TNRHHYNC 1.42323233152816 1.42323233152816 NA NA no change no change NA NA 18:79307234 18:79206937 ARRIBA in-frame 15 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_VNE0ZPBS 1.59717960138854 1.59717960138854 NA NA no change no change NA NA 18:79307234 18:79193183 ARRIBA frameshift 9 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_WCRKYV0T 1.81572513854251 1.81572513854251 NA NA no change no change NA NA 18:79307234 18:79193183 ARRIBA frameshift 26 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_YVMEEBKC 0.515995247647581 0.515995247647581 NA NA no change no change NA NA 18:79253541 18:79193183 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATP9B--ATP9B BS_ZH1FBX50 1.56896853967548 1.56896853967548 NA NA no change no change NA NA 18:79307234 18:79193183 ARRIBA in-frame 14 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA -ATPIF1--TAF12 BS_5CTVXVRX -1.3132930546812 1.26312716712525 NA NA no change no change NA NA 1:28246576 1:28605460 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr1:0.34Mb]],duplication/3'-3' ATPIF1 NA TAF12 NA NA NA NA NA NA -ATPIF1--TAF12 BS_8ZS9F31R -1.9376939306222 0.503248698648859 NA NA no change no change NA NA 1:28246576 1:28605460 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr1:0.34Mb]],duplication/3'-3' ATPIF1 NA TAF12 NA NA NA NA NA NA -ATRX--AL157778.1(513131)/AL137843.1(278882) BS_4B0BAVTX 3.47421970415005 NA NA NA differentially expressed NA NA NA X:77616613 X:99378115 ARRIBA frameshift 4 0 high [],duplication ATRX NA AL157778.1 AL137843.1 CosmicCensus, Oncogene NA NA NA NA -ATRX--ATP7A BS_9755PSCS 2.54216929511301 8.2087383695188 NA NA differentially expressed differentially expressed NA NA X:77785982 X:77971621 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chrX:0.12Mb]],inversion ATRX NA ATP7A NA CosmicCensus, Oncogene NA NA NA NA -ATRX--CYLC1 BS_NJ4WPQVK 0.695523251243245 300.289828154827 NA NA no change differentially expressed NA NA X:77785982 X:83872886 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chrX:6.07Mb]],inversion ATRX NA CYLC1 NA CosmicCensus, Oncogene NA NA NA NA -ATRX--CYLC1 BS_NJ4WPQVK 0.695523251243245 300.289828154827 NA NA no change differentially expressed NA NA X:77785982 X:83871452 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chrX:6.07Mb]],inversion ATRX NA CYLC1 NA CosmicCensus, Oncogene NA NA NA NA -ATRX--Z83820.1 BS_M0QYNVK8 4.23659275950106 NA NA NA differentially expressed NA NA NA X:77574250 X:84973237 ARRIBA frameshift 8 1 high [INTRACHROMOSOMAL[chrX:7.19Mb]],inversion ATRX NA Z83820.1 NA CosmicCensus, Oncogene NA NA NA NA -ATXN1--AL137003.2(10090)/STMND1(325285) BS_6T4JGBGY 2.9405124537406 NA NA -0.639804308365419 differentially expressed NA NA no change 6:16522627 6:16776973 ARRIBA other 1 2 high [],duplication ATXN1 NA AL137003.2 STMND1 NA NA NA NA NA -ATXN10--NPFFR2 BS_91VYM11A 0.409583287704155 5.68643465582284 NA NA no change differentially expressed NA NA 22:45702847 4:72128585 ARRIBA in-frame 4 0 medium [INTERCHROMOSOMAL[chr22--chr4]],translocation ATXN10 NA NPFFR2 NA NA NA NA NA NA -ATXN7--CACNA2D3 BS_FAQQ0GCQ 2.63304162520009 -1.20886410009921 NA NA differentially expressed no change NA NA 3:63913225 3:54627787 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr3:8.79Mb]],duplication ATXN7 NA CACNA2D3 NA NA TumorSuppressorGene NA NA NA -ATXN7--CACNA2D3 BS_FAQQ0GCQ 2.63304162520009 -1.20886410009921 NA NA differentially expressed no change NA NA 3:63912923 3:54627787 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:8.79Mb]],duplication ATXN7 NA CACNA2D3 NA NA TumorSuppressorGene NA NA NA -ATXN7--FLNB BS_BVSW4GTG 3.3323905332232 -0.0928527981694598 NA NA differentially expressed no change NA NA 3:63952483 3:58130741 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr3:5.69Mb]],duplication ATXN7 NA FLNB NA NA Oncogene NA NA NA -ATXN7--GK BS_QXKRN6CR 0.147489299772622 2.82589792228815 NA NA no change differentially expressed NA NA 3:64000210 X:30697364 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr3--chrX]],translocation/5'-5' ATXN7 NA GK NA NA NA NA NA NA -ATXN7L1--LHFPL3 BS_W644VEVE 5.44815009777956 1.0737258674284 NA NA differentially expressed no change NA NA 7:105788604 7:104736675 ARRIBA in-frame 5 1 high [INTRACHROMOSOMAL[chr7:0.70Mb]],inversion ATXN7L1 NA LHFPL3 NA NA NA NA NA NA -AUTS2--AC026786.1 BS_YB07VF1X -0.208583506680775 NA NA NA no change NA NA NA 7:70698620 12:133181946 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr7--chr12]],translocation AUTS2 NA AC026786.1 NA NA NA NA NA NA -AUTS2--DCDC1 BS_40MP5BWR 3.74273332405491 5.90000725203863 NA NA differentially expressed differentially expressed NA NA 7:69599962 11:30931952 ARRIBA in-frame 24 2 high [INTERCHROMOSOMAL[chr7--chr11]],translocation AUTS2 NA DCDC1 NA NA NA NA NA NA -AUTS2--ELK3 BS_MV6ASWV9 6.08545008634162 2.30528469043418 NA NA differentially expressed differentially expressed NA NA 7:69599962 12:96223565 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr7--chr12]],translocation AUTS2 NA ELK3 NA NA Oncogene, TranscriptionFactor NA NA NA -AUTS2--ITPKB BS_GTZCFGRZ 2.04546069405353 1.49070774144049 NA NA differentially expressed no change NA NA 7:69599962 1:226648771 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr7--chr1]],translocation AUTS2 NA ITPKB NA NA NA NA NA NA -AUTS2--LINC01986 BS_VNWKNRY4 5.38090543494013 NA NA NA differentially expressed NA NA NA 7:69599962 3:23968 ARRIBA frameshift 12 2 high [INTERCHROMOSOMAL[chr7--chr3]],translocation AUTS2 NA LINC01986 NA NA NA NA NA NA -AUTS2--ZNF268 BS_YB07VF1X -0.208583506680775 3.97329785432868 NA NA no change differentially expressed NA NA 7:70698620 12:133181946 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr7--chr12]],translocation AUTS2 NA ZNF268 NA NA TranscriptionFactor NA NA NA -AVEN--AC108861.1 BS_0VRSD9V3 2.94534424857703 NA NA NA differentially expressed NA NA NA 15:34003032 15:71549698 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr15:37.51Mb]],duplication AVEN NA AC108861.1 NA NA NA NA NA NA -AVEN--THSD4 BS_0VRSD9V3 2.94534424857703 0.615021392184158 NA NA differentially expressed no change NA NA 15:34003032 15:71764613 ARRIBA frameshift 17 0 high [INTRACHROMOSOMAL[chr15:37.06Mb]],duplication/5'-5' AVEN NA THSD4 NA NA NA NA NA NA -AXIN1--RBFOX1 BS_RCCN63K6 0.395708623081245 -1.90987040761568 NA NA no change no change NA NA 16:346148 16:7518147 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr16:4.89Mb]],inversion AXIN1 NA RBFOX1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -AZIN1-AS1--GJB1 BS_W644VEVE 1.79398143038971 -1.52844618581592 NA NA no change no change NA NA 8:102880058 X:71223692 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr8--chrX]],translocation AZIN1-AS1 NA GJB1 NA NA NA NA NA NA -B3GALNT2--LYST BS_W644VEVE 4.24264609874239 2.60021325514557 NA NA differentially expressed differentially expressed NA NA 1:235480054 1:235741628 ARRIBA in-frame 85 16 high [CCLE,INTRACHROMOSOMAL[chr1:0.16Mb]],duplication B3GALNT2 NA LYST NA NA NA NA NA TCGAFusion -B3GALT5--B3GALT5 BS_273HKCT4 2.04595884871175 2.04595884871175 NA NA differentially expressed differentially expressed NA NA 21:39646623 21:39642368 ARRIBA other 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.12Mb]],duplication B3GALT5 NA B3GALT5 NA NA NA NA NA NA -B3GLCT--AL672296.1(22535)/SH3BP5L(14119) BS_TXZ7KHTQ 1.14971025214087 -0.11313386706681 NA -0.579623269441829 no change no change NA no change 13:31229294 1:248796327 ARRIBA frameshift 2 0 medium [],translocation B3GLCT NA AL672296.1 SH3BP5L NA NA NA NA NA -B4GALNT3--AC005865.1 BS_W644VEVE 9.84057173156904 NA NA NA differentially expressed NA NA NA 12:549912 12:3323349 ARRIBA frameshift 17 3 medium [INTRACHROMOSOMAL[chr12:2.76Mb]],deletion B4GALNT3 NA AC005865.1 NA NA NA NA NA NA -B4GALNT3--AC005865.2 BS_W644VEVE 9.84057173156904 NA NA NA differentially expressed NA NA NA 12:460545 12:3316829 ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr12:2.73Mb]],deletion/5'-5' B4GALNT3 NA AC005865.2 NA NA NA NA NA NA -B4GALNT3--AC005865.2 BS_W644VEVE 9.84057173156904 NA NA NA differentially expressed NA NA NA 12:545469 12:3345983 ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr12:2.73Mb]],inversion B4GALNT3 NA AC005865.2 NA NA NA NA NA NA -B4GALNT3--AC005865.2 BS_W644VEVE 9.84057173156904 NA NA NA differentially expressed NA NA NA 12:536295 12:3298260 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:2.73Mb]],inversion B4GALNT3 NA AC005865.2 NA NA NA NA NA NA -B4GALNT3--AC010145.1 BS_W644VEVE 9.84057173156904 NA NA NA differentially expressed NA NA NA 12:460545 2:15997609 ARRIBA frameshift 9 0 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation B4GALNT3 NA AC010145.1 NA NA NA NA NA NA -B4GALNT3--AC010145.1 BS_W644VEVE 9.84057173156904 NA NA NA differentially expressed NA NA NA 12:460545 2:15997412 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr2]],translocation B4GALNT3 NA AC010145.1 NA NA NA NA NA NA -B4GALNT3--AC010745.2(55621)/AC010745.4(31563) BS_W644VEVE 9.84057173156904 277.880413973593 NA 142.456031814028 differentially expressed differentially expressed NA differentially expressed 12:460545 2:16284761 ARRIBA frameshift 6 0 low [],translocation B4GALNT3 NA AC010745.2 AC010745.4 NA NA NA NA NA -B4GALNT3--AC010745.2(76121)/AC010745.4(11063) BS_W644VEVE 9.84057173156904 277.880413973593 NA 142.456031814028 differentially expressed differentially expressed NA differentially expressed 12:460545 2:16305261 ARRIBA frameshift 71 8 high [],translocation B4GALNT3 NA AC010745.2 AC010745.4 NA NA NA NA NA -B4GALNT3--AC010745.4 BS_W644VEVE 9.84057173156904 142.456031814028 NA NA differentially expressed differentially expressed NA NA 12:460545 2:16316892 ARRIBA frameshift 6 0 low [INTERCHROMOSOMAL[chr12--chr2]],translocation B4GALNT3 NA AC010745.4 NA NA NA NA NA NA -B4GALNT3--AC113608.1 BS_W644VEVE 9.84057173156904 NA NA NA differentially expressed NA NA NA 12:460545 2:15870167 ARRIBA frameshift 7 4 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation/5'-5' B4GALNT3 NA AC113608.1 NA NA NA NA NA NA -B4GALNT3--AC113608.1(13988)/snoU13(19438) BS_W644VEVE 9.84057173156904 NA NA NA differentially expressed NA NA NA 12:460545 2:15884231 ARRIBA frameshift 9 0 medium [],translocation B4GALNT3 NA AC113608.1 snoU13 NA NA NA NA NA -B4GALNT3--AC130710.1(20541)/AC174048.1(22869) BS_W644VEVE 9.84057173156904 NA NA NA differentially expressed NA NA NA 12:460545 2:16126382 ARRIBA frameshift 12 3 medium [],translocation B4GALNT3 NA AC130710.1 AC174048.1 NA NA NA NA NA -B4GALNT3--B4GALNT3 BS_W644VEVE 9.84057173156904 9.84057173156904 NA NA differentially expressed differentially expressed NA NA 12:536295 12:534102 ARRIBA frameshift 4 1 medium [SELFIE,INTRACHROMOSOMAL[chr12:0.10Mb]],inversion/3'-3' B4GALNT3 NA B4GALNT3 NA NA NA NA NA NA -B4GALNT3--CCND2 BS_W644VEVE 9.84057173156904 10.5051335938283 NA NA differentially expressed differentially expressed NA NA 12:545469 12:4299860 ARRIBA in-frame 77 25 medium [INTRACHROMOSOMAL[chr12:3.71Mb]],deletion B4GALNT3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA -B4GALNT3--CCND2 BS_W644VEVE 9.84057173156904 10.5051335938283 NA NA differentially expressed differentially expressed NA NA 12:536295 12:4299860 ARRIBA in-frame 13 4 medium [INTRACHROMOSOMAL[chr12:3.71Mb]],deletion B4GALNT3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA -B4GALNT3--CCND2 BS_W644VEVE 9.84057173156904 10.5051335938283 NA NA differentially expressed differentially expressed NA NA 12:544972 12:4299860 ARRIBA frameshift 3 9 medium [INTRACHROMOSOMAL[chr12:3.71Mb]],deletion B4GALNT3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA -B4GALNT3--CCND2 BS_W644VEVE 9.84057173156904 10.5051335938283 NA NA differentially expressed differentially expressed NA NA 12:544434 12:4299860 ARRIBA in-frame 1 5 medium [INTRACHROMOSOMAL[chr12:3.71Mb]],deletion B4GALNT3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA -B4GALNT3--CCND2 BS_W644VEVE 9.84057173156904 10.5051335938283 NA NA differentially expressed differentially expressed NA NA 12:460545 12:4288842 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr12:3.71Mb]],deletion B4GALNT3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA -B4GALNT3--CCND2 BS_W644VEVE 9.84057173156904 10.5051335938283 NA NA differentially expressed differentially expressed NA NA 12:460545 12:4299860 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:3.71Mb]],deletion B4GALNT3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA -B4GALNT3--CCND2-AS1 BS_W644VEVE 9.84057173156904 2.35256618193704 NA NA differentially expressed differentially expressed NA NA 12:460545 12:4249193 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr12:3.69Mb]],inversion B4GALNT3 NA CCND2-AS1 NA NA Oncogene NA NA NA -B4GALNT3--CCND2-AS1 BS_W644VEVE 9.84057173156904 2.35256618193704 NA NA differentially expressed differentially expressed NA NA 12:536295 12:4249193 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:3.69Mb]],inversion B4GALNT3 NA CCND2-AS1 NA NA Oncogene NA NA NA -B4GALNT3--CRACR2A BS_W644VEVE 9.84057173156904 28.5413150224443 NA NA differentially expressed differentially expressed NA NA 12:460545 12:3627706 ARRIBA in-frame 15 0 medium [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion B4GALNT3 NA CRACR2A NA NA NA NA NA NA -B4GALNT3--CRACR2A BS_W644VEVE 9.84057173156904 28.5413150224443 NA NA differentially expressed differentially expressed NA NA 12:460545 12:3697035 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion B4GALNT3 NA CRACR2A NA NA NA NA NA NA -B4GALNT3--CRACR2A BS_W644VEVE 9.84057173156904 28.5413150224443 NA NA differentially expressed differentially expressed NA NA 12:460545 12:3733210 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion B4GALNT3 NA CRACR2A NA NA NA NA NA NA -B4GALNT3--CRACR2A BS_W644VEVE 9.84057173156904 28.5413150224443 NA NA differentially expressed differentially expressed NA NA 12:536295 12:3697035 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion B4GALNT3 NA CRACR2A NA NA NA NA NA NA -B4GALNT3--CRACR2A BS_W644VEVE 9.84057173156904 28.5413150224443 NA NA differentially expressed differentially expressed NA NA 12:559421 12:3680349 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion B4GALNT3 NA CRACR2A NA NA NA NA NA NA -B4GALNT3--CRACR2A BS_W644VEVE 9.84057173156904 28.5413150224443 NA NA differentially expressed differentially expressed NA NA 12:460545 12:3619372 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion B4GALNT3 NA CRACR2A NA NA NA NA NA NA -B4GALNT3--ERC1 BS_W644VEVE 9.84057173156904 3.38205052943934 NA NA differentially expressed differentially expressed NA NA 12:536295 12:1180540 ARRIBA in-frame 34 8 medium [INTRACHROMOSOMAL[chr12:0.43Mb]],deletion B4GALNT3 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA -B4GALNT3--ERC1 BS_W644VEVE 9.84057173156904 3.38205052943934 NA NA differentially expressed differentially expressed NA NA 12:460545 12:1141620 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr12:0.43Mb]],deletion B4GALNT3 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA -B4GALNT3--ERC1 BS_W644VEVE 9.84057173156904 3.38205052943934 NA NA differentially expressed differentially expressed NA NA 12:460545 12:1180540 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr12:0.43Mb]],deletion B4GALNT3 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA -B4GALNT3--MYCNOS BS_W644VEVE 9.84057173156904 14.3828701915834 NA NA differentially expressed differentially expressed NA NA 12:460545 2:15941097 ARRIBA frameshift 21 1 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation B4GALNT3 NA MYCNOS NA NA NA NA NA NA -B4GALNT3--MYCNOS BS_W644VEVE 9.84057173156904 14.3828701915834 NA NA differentially expressed differentially expressed NA NA 12:460545 2:15922190 ARRIBA frameshift 4 1 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation B4GALNT3 NA MYCNOS NA NA NA NA NA NA -B4GALNT3--MYCNOS BS_W644VEVE 9.84057173156904 14.3828701915834 NA NA differentially expressed differentially expressed NA NA 12:536295 2:15941097 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation B4GALNT3 NA MYCNOS NA NA NA NA NA NA -B4GALNT3--MYCNOS BS_W644VEVE 9.84057173156904 14.3828701915834 NA NA differentially expressed differentially expressed NA NA 12:460545 2:15921122 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr2]],translocation B4GALNT3 NA MYCNOS NA NA NA NA NA NA -B4GALNT3--NINJ2 BS_8NY9J9NQ -0.37856561860041 -0.494799317352866 NA NA no change no change NA NA 12:559421 12:566178 ARRIBA frameshift 4 0 high [CCLE,INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[787]],inversion B4GALNT3 NA NINJ2 NA NA NA NA NA NA -B4GALNT3--NINJ2 BS_W644VEVE 9.84057173156904 4.30346219338763 NA NA differentially expressed differentially expressed NA NA 12:460545 12:566178 ARRIBA frameshift 7 0 medium [CCLE,INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[787]],inversion B4GALNT3 NA NINJ2 NA NA NA NA NA NA -B4GALNT3--NINJ2 BS_W644VEVE 9.84057173156904 4.30346219338763 NA NA differentially expressed differentially expressed NA NA 12:545469 12:566178 ARRIBA in-frame 1 0 low [CCLE,INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[787]],inversion B4GALNT3 NA NINJ2 NA NA NA NA NA NA -B4GALNT3--NINJ2 BS_W644VEVE 9.84057173156904 4.30346219338763 NA NA differentially expressed differentially expressed NA NA 12:551031 12:566178 ARRIBA in-frame 1 0 low [CCLE,INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[787]],inversion B4GALNT3 NA NINJ2 NA NA NA NA NA NA -B4GALNT3--TSPAN9 BS_W644VEVE 9.84057173156904 1.93250949774353 NA NA differentially expressed no change NA NA 12:532774 12:3277101 ARRIBA other 31 16 medium [INTRACHROMOSOMAL[chr12:2.51Mb]],inversion/3'-3' B4GALNT3 NA TSPAN9 NA NA NA NA NA NA -B4GALNT3--TSPAN9 BS_W644VEVE 9.84057173156904 1.93250949774353 NA NA differentially expressed no change NA NA 12:548297 12:3278421 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr12:2.51Mb]],deletion B4GALNT3 NA TSPAN9 NA NA NA NA NA NA -B4GALNT3--TSPAN9 BS_W644VEVE 9.84057173156904 1.93250949774353 NA NA differentially expressed no change NA NA 12:460545 12:3281198 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:2.51Mb]],deletion B4GALNT3 NA TSPAN9 NA NA NA NA NA NA -B4GALNT3--WNT5B BS_W644VEVE 9.84057173156904 7.93034064068299 NA NA differentially expressed differentially expressed NA NA 12:460545 12:1646803 ARRIBA frameshift 11 0 medium [INTRACHROMOSOMAL[chr12:0.97Mb]],inversion/3'-3' B4GALNT3 NA WNT5B NA NA NA NA NA NA -B4GALT1--LINC00687 BS_6P50QTPP 2.87155220365966 -0.113154363346207 NA NA differentially expressed no change NA NA 9:33135189 20:11822300 ARRIBA frameshift 21 4 high [INTERCHROMOSOMAL[chr9--chr20]],translocation/5'-5' B4GALT1 NA LINC00687 NA NA NA NA NA NA -B4GALT1--LINC00687 BS_W3R88RFP 2.56457892892807 -0.113154363346207 NA NA differentially expressed no change NA NA 9:33135189 20:11842386 ARRIBA frameshift 35 0 high [INTERCHROMOSOMAL[chr9--chr20]],translocation/5'-5' B4GALT1 NA LINC00687 NA NA NA NA NA NA -BABAM1--AC087633.2 BS_AZN38B7V -0.533754765982254 NA NA NA no change NA NA NA 19:17274185 15:95002318 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr19--chr15]],translocation/5'-5' BABAM1 NA AC087633.2 NA NA NA NA NA NA -BABAM2--GAPDHP28(19507)/FAF2P1(78610) BS_EJ9JKM1C NA -0.0610019398708347 NA -0.14535952174191 NA no change NA no change 2:28244862 10:91687289 ARRIBA frameshift 3 0 high [],translocation BABAM2 NA GAPDHP28 FAF2P1 NA NA NA NA NA -BACE2--AC020915.2 BS_YEQVW4ND 1.65858622894666 6.53062799941695 NA NA no change differentially expressed NA NA 21:41226354 19:58285717 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr21--chr19]],translocation BACE2 NA AC020915.2 NA NA NA NA NA NA -BACE2--AC020915.6 BS_YEQVW4ND 1.65858622894666 NA NA NA no change NA NA NA 21:41226354 19:58285717 ARRIBA in-frame 2 0 high [INTERCHROMOSOMAL[chr21--chr19]],translocation BACE2 NA AC020915.6 NA NA NA NA NA NA -BACE2--ZNF8 BS_YEQVW4ND 1.65858622894666 1.3410637801528 NA NA no change no change NA NA 21:41226354 19:58285717 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr21--chr19]],translocation BACE2 NA ZNF8 NA NA TranscriptionFactor NA NA NA -BACH1--QRICH1 BS_PN2CE34A 4.71047595627917 0.779034861665355 NA NA differentially expressed no change NA NA 21:29321514 3:49077038 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr21--chr3]],translocation BACH1 NA QRICH1 NA TranscriptionFactor NA NA NA NA -BAGE2--BAGE2 BS_052PZFMK 37.0176439240208 37.0176439240208 NA NA differentially expressed differentially expressed NA NA 21:10464976 21:10454134 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.10Mb]],duplication/non-canonical_splicing BAGE2 NA BAGE2 NA NA NA NA NA NA -BAGE2--BAGE2 BS_6JHXXVR7 105.181121349904 105.181121349904 NA NA differentially expressed differentially expressed NA NA 21:10473729 21:10454134 ARRIBA other 13 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.10Mb]],duplication/non-canonical_splicing BAGE2 NA BAGE2 NA NA NA NA NA NA -BAGE2--BAGE2 BS_BWBDH9GM 55.1184922918122 55.1184922918122 NA NA differentially expressed differentially expressed NA NA 21:10473729 21:10454134 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.10Mb]],duplication/non-canonical_splicing BAGE2 NA BAGE2 NA NA NA NA NA NA -BAIAP2--MAP2K6 BS_7FWZ518S 0.409982481969658 4.44047061880811 NA NA no change differentially expressed NA NA 17:81035308 17:69505780 ARRIBA frameshift 14 1 high [INTRACHROMOSOMAL[chr17:11.49Mb]],duplication BAIAP2 NA MAP2K6 NA NA Kinase, Kinase NA NA NA -BAIAP2--MAP2K6 BS_7FWZ518S 0.409982481969658 4.44047061880811 NA NA no change differentially expressed NA NA 17:81036961 17:69505780 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr17:11.49Mb]],duplication BAIAP2 NA MAP2K6 NA NA Kinase, Kinase NA NA NA -BAZ2B--CECR3 BS_1D6PZNKN 1.46987769611355 4.80260175288856 NA NA no change differentially expressed NA NA 2:159446782 22:17260585 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr2--chr22]],translocation/5'-5' BAZ2B NA CECR3 NA TranscriptionFactor NA NA NA NA -BBS9--NT5C3A BS_1QNTEZPS 2.86656101177323 -0.246552819619676 NA NA differentially expressed no change NA NA 7:33177591 7:33038842 ARRIBA frameshift 18 2 high [INTRACHROMOSOMAL[chr7:0.07Mb],LOCAL_INVERSION:+:-:[66447]],duplication/5'-5' BBS9 NA NT5C3A NA NA NA NA NA NA -BBS9(34969)/AC008080.1(84944)--BBS9 BS_R7HZCZ8B 1.51794235647044 1.51794235647044 NA NA no change no change NA NA 7:33641037 7:33604865 ARRIBA other 1 0 low [],duplication BBS9 AC008080.1 BBS9 NA NA NA NA NA NA -BBS9(36288)/AC008080.1(83625)--BBS9 BS_EHVYJAVA 2.39888178763674 2.39888178763674 NA NA differentially expressed differentially expressed NA NA 7:33642356 7:33533954 ARRIBA other 1 0 low [],duplication BBS9 AC008080.1 BBS9 NA NA NA NA NA NA -BBS9(36288)/AC008080.1(83625)--BBS9 BS_W4HGV6E7 4.93784027339935 4.93784027339935 NA NA differentially expressed differentially expressed NA NA 7:33642356 7:33357855 ARRIBA other 1 0 low [],duplication BBS9 AC008080.1 BBS9 NA NA NA NA NA NA -BBS9(36850)/AC008080.1(83063)--BBS9 BS_N6NE6B3W 1.92592396598924 1.92592396598924 NA NA no change no change NA NA 7:33642918 7:33533954 ARRIBA other 1 0 low [],duplication BBS9 AC008080.1 BBS9 NA NA NA NA NA NA -BBS9(44687)/AC008080.1(75226)--BBS9 BS_FEPRNEXX 1.56916602031494 1.56916602031494 NA NA no change no change NA NA 7:33650755 7:33604865 ARRIBA other 1 0 low [],duplication BBS9 AC008080.1 BBS9 NA NA NA NA NA NA -BBS9(44687)/AC008080.1(75226)--BBS9 BS_MY9D8XZ1 1.60706392433046 1.60706392433046 NA NA no change no change NA NA 7:33650755 7:33357855 ARRIBA other 1 1 high [],duplication BBS9 AC008080.1 BBS9 NA NA NA NA NA NA -BCAP29--DUS4L BS_QEYPFYHD 0.34313082177256 3.74547140057292 NA NA no change differentially expressed NA NA 7:107613432 7:107564588 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_REARRANGEMENT:+:[1513]],duplication BCAP29 NA DUS4L NA NA NA NA NA NA -BCAP29--DUS4L BS_QEYPFYHD 0.34313082177256 3.74547140057292 NA NA no change differentially expressed NA NA 7:107583982 7:107575188 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_REARRANGEMENT:+:[1513]],duplication BCAP29 NA DUS4L NA NA NA NA NA NA -BCAP29--DUS4L BS_QEYPFYHD 0.34313082177256 3.74547140057292 NA NA no change differentially expressed NA NA 7:107613432 7:107575188 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_REARRANGEMENT:+:[1513]],duplication BCAP29 NA DUS4L NA NA NA NA NA NA -BCAP29--DUS4L BS_QEYPFYHD 0.34313082177256 3.74547140057292 NA NA no change differentially expressed NA NA 7:107596002 7:107567050 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_REARRANGEMENT:+:[1513]],duplication BCAP29 NA DUS4L NA NA NA NA NA NA -BCAP29--DUS4L BS_QEYPFYHD 0.34313082177256 3.74547140057292 NA NA no change differentially expressed NA NA 7:107596002 7:107576366 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_REARRANGEMENT:+:[1513]],duplication BCAP29 NA DUS4L NA NA NA NA NA NA -BCAR3--BCAR3 BS_W9AT0MR7 -0.859985468290376 -0.859985468290376 NA NA no change no change NA NA 1:93642304 1:93841403 ARRIBA frameshift 2 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.29Mb]],inversion/5'-5' BCAR3 NA BCAR3 NA NA NA NA NA NA -BCAS1--RAF1 BS_401R3KV0 -1.13608301185825 -0.173225368601259 NA NA no change no change NA NA 20:53966906 3:12600415 ARRIBA in-frame 16 3 high [INTERCHROMOSOMAL[chr20--chr3]],translocation BCAS1 NA RAF1 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -BCAS3--SEL1L3 BS_KYF0Q0E7 2.26432677528137 1.07203251437841 NA NA differentially expressed no change NA NA 17:60689761 4:25869769 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr17--chr4]],translocation BCAS3 NA SEL1L3 NA Oncogene NA NA NA NA -BCAS3--SEL1L3 BS_KYF0Q0E7 2.26432677528137 1.07203251437841 NA NA differentially expressed no change NA NA 17:60689761 4:25847864 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr17--chr4]],translocation BCAS3 NA SEL1L3 NA Oncogene NA NA NA NA -BCAS3--SEL1L3 BS_KYF0Q0E7 2.26432677528137 1.07203251437841 NA NA differentially expressed no change NA NA 17:60689761 4:25835323 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr17--chr4]],translocation BCAS3 NA SEL1L3 NA Oncogene NA NA NA NA -BCAS3--SMIM20 BS_KYF0Q0E7 2.26432677528137 -3.14332707368218 NA NA differentially expressed differentially expressed NA NA 17:60689761 4:25906834 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr17--chr4]],translocation/5'-5' BCAS3 NA SMIM20 NA Oncogene NA NA NA NA -BCAT1--BCAT1 BS_AMZ70B6F 3.89198012698633 3.89198012698633 NA NA differentially expressed differentially expressed NA NA 12:24878530 12:24894475 ARRIBA in-frame 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.14Mb]],duplication/non-canonical_splicing BCAT1 NA BCAT1 NA NA NA NA NA NA -BCAT1--TNN BS_91VYM11A 0.681322084596187 19.3075405584804 NA NA no change differentially expressed NA NA 12:24948927 1:175066852 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr12--chr1]],translocation BCAT1 NA TNN NA NA Oncogene NA NA NA -BCL10--CRIM1 BS_XBQZYS8G 3.41365940041512 2.07931047777373 NA NA differentially expressed differentially expressed NA NA 1:85270618 2:36528686 ARRIBA frameshift 9 2 high [INTERCHROMOSOMAL[chr1--chr2]],translocation/5'-5' BCL10 NA CRIM1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -BCL10--FEZ2 BS_XBQZYS8G 3.41365940041512 -1.24155682970545 NA NA differentially expressed no change NA NA 1:85270618 2:36542075 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr1--chr2]],translocation BCL10 NA FEZ2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -BCL10--FEZ2 BS_XBQZYS8G 3.41365940041512 -1.24155682970545 NA NA differentially expressed no change NA NA 1:85270618 2:36532021 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr1--chr2]],translocation BCL10 NA FEZ2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -BCL2L11--AC107079.1(58041)/AC112715.1(74953) BS_RRAEQZ97 4.82557818094537 -0.276235092835016 NA NA differentially expressed no change NA NA 2:111150147 2:237182138 ARRIBA frameshift 4 0 high [],inversion BCL2L11 NA AC107079.1 AC112715.1 TumorSuppressorGene, Oncogene NA NA NA NA -BCL2L13--IGLV6-57 BS_49BQS7Z6 2.96657220662186 18.6960357076306 NA NA differentially expressed differentially expressed NA NA 22:17655832 22:22195970 ARRIBA in-frame 55 2 high [INTRACHROMOSOMAL[chr22:4.46Mb]],deletion BCL2L13 NA IGLV6-57 NA NA NA NA NA NA -BCL2L13--IGLV6-57 BS_49BQS7Z6 2.96657220662186 18.6960357076306 NA NA differentially expressed differentially expressed NA NA 22:17638886 22:22195970 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr22:4.46Mb]],deletion BCL2L13 NA IGLV6-57 NA NA NA NA NA NA -BCL2L13--IGLV6-57 BS_49BQS7Z6 2.96657220662186 18.6960357076306 NA NA differentially expressed differentially expressed NA NA 22:17638700 22:22195970 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr22:4.46Mb]],deletion BCL2L13 NA IGLV6-57 NA NA NA NA NA NA -BCL2L13--IGLV6-57 BS_GXTFW99H 2.88870166208034 21.4607075109948 NA NA differentially expressed differentially expressed NA NA 22:17655832 22:22195970 ARRIBA in-frame 35 1 high [INTRACHROMOSOMAL[chr22:4.46Mb]],deletion BCL2L13 NA IGLV6-57 NA NA NA NA NA NA -BCL2L13--IGLV6-57 BS_GXTFW99H 2.88870166208034 21.4607075109948 NA NA differentially expressed differentially expressed NA NA 22:17638886 22:22195970 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr22:4.46Mb]],deletion BCL2L13 NA IGLV6-57 NA NA NA NA NA NA -BCL2L13--PARVB BS_1D6PZNKN 2.06175086318955 1.23341423655678 NA NA differentially expressed no change NA NA 22:17683321 22:44163858 ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr22:26.27Mb]],deletion BCL2L13 NA PARVB NA NA Oncogene NA NA NA -BCL2L13--PARVB BS_1D6PZNKN 2.06175086318955 1.23341423655678 NA NA differentially expressed no change NA NA 22:17655832 22:44163858 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr22:26.27Mb]],deletion BCL2L13 NA PARVB NA NA Oncogene NA NA NA -BCL9--FAM189B BS_Y3G1X98S 2.94467329529073 1.5301373207414 NA NA differentially expressed no change NA NA 1:147606866 1:155247955 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr1:7.62Mb]],inversion BCL9 NA FAM189B NA CosmicCensus, Oncogene NA NA NA NA -BCL9--PI4KB BS_3J85TTZM 1.18909316890114 0.951482610978518 NA NA no change no change NA NA 1:147541674 1:151327687 ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr1:3.67Mb]],inversion BCL9 NA PI4KB NA CosmicCensus, Oncogene Kinase NA NA NA -BCL9--PI4KB BS_3J85TTZM 1.18909316890114 0.951482610978518 NA NA no change no change NA NA 1:147541674 1:151316509 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr1:3.67Mb]],inversion BCL9 NA PI4KB NA CosmicCensus, Oncogene Kinase NA NA NA -BCL9--PI4KB BS_3J85TTZM 1.18909316890114 0.951482610978518 NA NA no change no change NA NA 1:147541674 1:151307801 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:3.67Mb]],inversion BCL9 NA PI4KB NA CosmicCensus, Oncogene Kinase NA NA NA -BCL9L--SLC35F2 BS_SXCZ3CXN 3.00546053291084 2.98964487423832 NA NA differentially expressed differentially expressed NA NA 11:118896245 11:107868278 ARRIBA other 9 1 medium [INTRACHROMOSOMAL[chr11:10.97Mb]],deletion BCL9L NA SLC35F2 NA CosmicCensus NA NA NA NA -BCOR--BX119917.1 BS_W80TJC27 1.60970803692055 NA NA NA no change NA NA NA X:40097215 X:72159928 ARRIBA other 6 0 high [INTRACHROMOSOMAL[chrX:31.98Mb]],duplication/5'-5' BCOR NA BX119917.1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -BCOR--EP300 BS_WGK8ZMVA 7.45038655555892 3.92660163520615 NA NA differentially expressed differentially expressed NA NA X:40063046 22:41178265 ARRIBA frameshift 164 23 high [ChimerSeq,FA_CancerSupp,INTERCHROMOSOMAL[chrX--chr22]],translocation BCOR NA EP300 NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -BCOR--NHSL2 BS_W80TJC27 1.60970803692055 -0.142945901056134 NA NA no change no change NA NA X:40097215 X:72155726 ARRIBA other 7 1 high [INTRACHROMOSOMAL[chrX:31.73Mb]],duplication/5'-5' BCOR NA NHSL2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -BCORL1--BEND2 BS_NGHK9RZP 0.502275888608796 196.176272102207 NA NA no change differentially expressed NA NA X:129982762 X:18203915 ARRIBA other 5 1 high [INTRACHROMOSOMAL[chrX:111.76Mb]],inversion BCORL1 NA BEND2 NA TumorSuppressorGene, CosmicCensus NA NA NA NA -BCORL1--BEND2 BS_NGHK9RZP 0.502275888608796 196.176272102207 NA NA no change differentially expressed NA NA X:129982762 X:18212680 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chrX:111.76Mb]],inversion BCORL1 NA BEND2 NA TumorSuppressorGene, CosmicCensus NA NA NA NA -BCR--AP000350.4 BS_31TF0P1N -0.876676165460182 NA NA NA no change NA NA NA 22:23295155 22:23868481 ARRIBA in-frame 4 0 high [INTRACHROMOSOMAL[chr22:0.54Mb]],deletion BCR NA AP000350.4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -BCR--AP000350.4 BS_31TF0P1N -0.876676165460182 NA NA NA no change NA NA NA 22:23292638 22:23868481 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr22:0.54Mb]],deletion BCR NA AP000350.4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -BCR--FERMT2 BS_ZVZDDW2G -1.13811291765802 0.686166413645313 NA NA no change no change NA NA 22:23182239 14:52881469 ARRIBA in-frame 39 3 high [HGNC_GENEFAM,INTERCHROMOSOMAL[chr22--chr14]],translocation BCR NA FERMT2 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -BCR--GALNT12 BS_31TF0P1N -0.876676165460182 0.797031023722843 NA NA no change no change NA NA 22:23295155 9:98809920 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr22--chr9]],translocation/5'-5' BCR NA GALNT12 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -BCR--KIAA1671 BS_N0877CX1 -1.56171258186862 2.05906756012766 NA NA no change differentially expressed NA NA 22:23182239 22:25032609 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr22:1.63Mb]],deletion BCR NA KIAA1671 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -BCR--MIF BS_PGHK1JRW -0.719976638204589 0.0206232868529188 NA NA no change no change NA NA 22:23182239 22:23894772 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr22:0.58Mb]],deletion BCR NA MIF NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene Oncogene NA NA NA -BCR--MKL1 BS_P4D8Y3S8 -1.61621697729864 1.70871835199541 NA NA no change no change NA NA 22:23273774 22:40555102 ARRIBA frameshift 12 1 high [INTRACHROMOSOMAL[chr22:17.09Mb]],deletion/5'-5' BCR NA MKL1 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene Oncogene NA NA NA -BCR--SLC2A11 BS_31TF0P1N -0.876676165460182 -2.65360216673385 NA NA no change differentially expressed NA NA 22:23295155 22:23868481 ARRIBA in-frame 4 0 high [INTRACHROMOSOMAL[chr22:0.54Mb]],deletion BCR NA SLC2A11 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -BCR--SLC2A11 BS_31TF0P1N -0.876676165460182 -2.65360216673385 NA NA no change differentially expressed NA NA 22:23292638 22:23868481 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr22:0.54Mb]],deletion BCR NA SLC2A11 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -BCRP8--TOP3B BS_31TF0P1N -0.527787490629423 -1.18505919709509 NA NA no change no change NA NA 22:23179918 22:21962893 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:1.20Mb]],deletion BCRP8 NA TOP3B NA NA NA NA NA NA -BET1--AC006378.1(1730)/AC003092.1(9990) BS_6T4JGBGY 3.72165792131527 NA NA -0.148684527909754 differentially expressed NA NA no change 7:93972495 7:94012843 ARRIBA other 6 0 medium [],duplication BET1 NA AC006378.1 AC003092.1 NA NA NA NA NA -BET1L--USP47 BS_ZVWE73JZ -0.666769066832374 0.16423659287858 NA NA no change no change NA NA 11:205611 11:11920156 ARRIBA in-frame 7 2 high [INTRACHROMOSOMAL[chr11:11.63Mb]],inversion BET1L NA USP47 NA NA NA NA NA NA -BICD1--AC016957.2(4615)/AC016957.1(1290) BS_YETBN0RQ 2.77509214179939 NA NA NA differentially expressed NA NA NA 12:32107544 12:32005837 ARRIBA frameshift 15 0 high [],inversion BICD1 NA AC016957.2 AC016957.1 NA NA NA NA NA -BICD1--BICD1 BS_9HA238XS 2.07967275028249 2.07967275028249 NA NA differentially expressed differentially expressed NA NA 12:32306122 12:32305697 ARRIBA in-frame 4 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing BICD1 NA BICD1 NA NA NA NA NA NA -BICD1--BICD1 BS_FQX1PRAJ 2.5553898209346 2.5553898209346 NA NA differentially expressed differentially expressed NA NA 12:32306122 12:32305697 ARRIBA in-frame 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing BICD1 NA BICD1 NA NA NA NA NA NA -BICD1--BICD1 BS_FRM9TG02 2.47527586253277 2.47527586253277 NA NA differentially expressed differentially expressed NA NA 12:32306122 12:32305697 ARRIBA in-frame 12 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing BICD1 NA BICD1 NA NA NA NA NA NA -BICD1--BICD1 BS_NDRDM2A9 2.43340370078313 2.43340370078313 NA NA differentially expressed differentially expressed NA NA 12:32306122 12:32305697 ARRIBA in-frame 9 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing BICD1 NA BICD1 NA NA NA NA NA NA -BICD1--BICD1 BS_QAG1RDXN 3.29444620180463 3.29444620180463 NA NA differentially expressed differentially expressed NA NA 12:32337706 12:32293994 ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing BICD1 NA BICD1 NA NA NA NA NA NA -BICD1--BICD1 BS_R13X6TMW 1.35598877874741 1.35598877874741 NA NA no change no change NA NA 12:32306122 12:32305697 ARRIBA in-frame 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing BICD1 NA BICD1 NA NA NA NA NA NA -BICD1--BICD1 BS_TAHV8N04 1.86276817084233 1.86276817084233 NA NA no change no change NA NA 12:32306122 12:32305697 ARRIBA in-frame 18 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing BICD1 NA BICD1 NA NA NA NA NA NA -BICD1--PACRG BS_MN5XVP5A 2.74293265524352 -0.160257158995201 NA NA differentially expressed no change NA NA 12:32107544 6:163314827 ARRIBA frameshift 11 0 high [INTERCHROMOSOMAL[chr12--chr6]],translocation BICD1 NA PACRG NA NA TumorSuppressorGene NA NA NA -BICD1--PACRG BS_MN5XVP5A 2.74293265524352 -0.160257158995201 NA NA differentially expressed no change NA NA 12:32107544 6:163312779 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr6]],translocation BICD1 NA PACRG NA NA TumorSuppressorGene NA NA NA -BICRAL--AL035587.1(3761)/RPL24P4(4224) BS_NB42PWZN NA NA NA 3.04344782148929 NA NA NA differentially expressed 6:42830172 6:42952121 ARRIBA frameshift 4 1 high [],inversion BICRAL NA AL035587.1 RPL24P4 NA NA NA NA NA -BIN1--AC020718.1 BS_JAEM78XS -2.14130752524443 NA NA NA differentially expressed NA NA NA 2:127048116 2:198929482 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr2:71.78Mb]],inversion/5'-5' BIN1 NA AC020718.1 NA TumorSuppressorGene, Oncogene NA NA NA NA -BIN1--NBAS BS_RRAEQZ97 -1.58473832527318 -0.276384285583669 NA NA no change no change NA NA 2:127106860 2:15277101 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr2:111.49Mb]],deletion BIN1 NA NBAS NA TumorSuppressorGene, Oncogene NA NA NA NA -BMI1--RNU6-413P(39256)/ARMC3(101269) BS_FBJ5Q54N 1.54191960491049 NA NA -0.0440606299493207 no change NA NA no change 10:22329448 10:22826755 ARRIBA frameshift 144 24 high [],deletion BMI1 NA RNU6-413P ARMC3 Oncogene NA NA NA NA -BMP1--CSMD1 BS_HZRM07TW -0.144534169399235 -1.6709180048611 NA NA no change no change NA NA 8:22201928 8:3187829 ARRIBA frameshift 4 2 high [INTRACHROMOSOMAL[chr8:17.17Mb]],duplication/5'-5' BMP1 NA CSMD1 NA NA TumorSuppressorGene NA NA NA -BMP2--C20orf78(17425)/AL135936.1(153131) BS_B61168DE 2.32183105539529 -0.113476013694111 NA NA differentially expressed no change NA NA 20:6770472 20:18847578 ARRIBA frameshift 3 0 high [],inversion BMP2 NA C20orf78 AL135936.1 TumorSuppressorGene NA NA NA NA -BMP2K--BMP2K BS_CXVJK2FY 3.68135141487273 3.68135141487273 NA NA differentially expressed differentially expressed NA NA 4:78865720 4:78850924 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.14Mb]],duplication/non-canonical_splicing BMP2K NA BMP2K NA Kinase Kinase NA NA NA -BMPR2--FEV BS_S6S7SK3P 2.68131652956648 -0.504897979070045 NA NA differentially expressed no change NA NA 2:202520201 2:218984305 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr2:16.41Mb]],inversion BMPR2 NA FEV NA Kinase, TumorSuppressorGene, Kinase CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -BMS1P2--PTPN20 BS_E4F1D721 3.9485625590666 2.44655886404515 NA NA differentially expressed differentially expressed NA NA 10:47542167 10:46940623 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr10:0.54Mb]],inversion BMS1P2 NA PTPN20 NA NA NA NA NA NA -BMS1P2--PTPN20 BS_E4F1D721 3.9485625590666 2.44655886404515 NA NA differentially expressed differentially expressed NA NA 10:47542167 10:46964986 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.54Mb]],inversion BMS1P2 NA PTPN20 NA NA NA NA NA NA -BMS1P2--PTPN20 BS_KDSTG5YY 2.03146701450896 1.10461092815778 NA NA differentially expressed no change NA NA 10:47542167 10:46940582 ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr10:0.54Mb]],inversion BMS1P2 NA PTPN20 NA NA NA NA NA NA -BMS1P2--PTPN20 BS_N6NE6B3W 1.53284467599746 2.86736203015877 NA NA no change differentially expressed NA NA 10:47542167 10:46940623 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr10:0.54Mb]],inversion BMS1P2 NA PTPN20 NA NA NA NA NA NA -BMS1P2--PTPN20 BS_RHD7XPNP 2.53130882177053 2.71481413345575 NA NA differentially expressed differentially expressed NA NA 10:47542167 10:46932377 ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr10:0.54Mb]],inversion BMS1P2 NA PTPN20 NA NA NA NA NA NA -BMS1P2--PTPN20 BS_RHD7XPNP 2.53130882177053 2.71481413345575 NA NA differentially expressed differentially expressed NA NA 10:47542167 10:46940623 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr10:0.54Mb]],inversion BMS1P2 NA PTPN20 NA NA NA NA NA NA -BMS1P2--PTPN20 BS_X67GTEM6 2.55521049196202 1.65021859638648 NA NA differentially expressed no change NA NA 10:47542167 10:46943918 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr10:0.54Mb]],inversion BMS1P2 NA PTPN20 NA NA NA NA NA NA -BMS1P2--PTPN20 BS_X67GTEM6 2.55521049196202 1.65021859638648 NA NA differentially expressed no change NA NA 10:47542167 10:46940623 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.54Mb]],inversion BMS1P2 NA PTPN20 NA NA NA NA NA NA -BMT2--DOCK4 BS_6JHXXVR7 NA 0.558604988893902 NA NA NA no change NA NA 7:112895569 7:112169166 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr7:0.61Mb]],inversion/5'-5' BMT2 NA DOCK4 NA NA NA NA NA NA -BNC2--SGMS1 BS_VJ2S5DVS 7.51854884923976 1.63200420357088 NA NA differentially expressed no change NA NA 9:16552530 10:50519921 ARRIBA frameshift 8 2 high [INTERCHROMOSOMAL[chr9--chr10]],translocation BNC2 NA SGMS1 NA TranscriptionFactor TumorSuppressorGene, Oncogene NA NA NA -BOD1--AC243725.1 BS_4QW2S1Q8 0.862115261436302 NA NA NA no change NA NA NA 5:173616200 17:21782880 ARRIBA frameshift 9 0 high [INTERCHROMOSOMAL[chr5--chr17]],translocation BOD1 NA AC243725.1 NA NA NA NA NA NA -BOD1--AC243725.1 BS_4QW2S1Q8 0.862115261436302 NA NA NA no change NA NA NA 5:173616200 17:21775839 ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr5--chr17]],translocation BOD1 NA AC243725.1 NA NA NA NA NA NA -BOD1--AC243725.1 BS_MX23ZY0Y 1.36996298542865 NA NA NA no change NA NA NA 5:173616200 17:21775839 ARRIBA frameshift 9 0 high [INTERCHROMOSOMAL[chr5--chr17]],translocation BOD1 NA AC243725.1 NA NA NA NA NA NA -BOD1--AC243725.1 BS_MX23ZY0Y 1.36996298542865 NA NA NA no change NA NA NA 5:173616200 17:21782880 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr5--chr17]],translocation BOD1 NA AC243725.1 NA NA NA NA NA NA -BOD1--AC243725.1 BS_P9JP6JFA 2.04288257151952 NA NA NA differentially expressed NA NA NA 5:173616200 17:21782880 ARRIBA frameshift 4 1 medium [INTERCHROMOSOMAL[chr5--chr17]],translocation BOD1 NA AC243725.1 NA NA NA NA NA NA -BOD1--AC243725.1 BS_P9JP6JFA 2.04288257151952 NA NA NA differentially expressed NA NA NA 5:173616200 17:21775839 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr5--chr17]],translocation BOD1 NA AC243725.1 NA NA NA NA NA NA -BOD1--LINC01484(13820)/LINC01485(26759) BS_X2QTK3QD -0.383808319203587 0.169711512375494 NA -1.85627373141168 no change no change NA no change 5:173613131 5:173760031 ARRIBA frameshift 9 0 high [],duplication BOD1 NA LINC01484 LINC01485 NA NA NA NA NA -BOLL--DPP10 BS_RRAEQZ97 18.9153635125716 0.748559083635649 NA NA differentially expressed no change NA NA 2:197756428 2:114667973 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr2:81.88Mb]],inversion BOLL NA DPP10 NA NA NA NA NA NA -BPTF--SPTAN1 BS_HD4EJYE3 3.00838076607321 0.250644640864367 NA NA differentially expressed no change NA NA 17:67945890 9:128566737 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr17--chr9]],translocation BPTF NA SPTAN1 NA TranscriptionFactor Oncogene NA NA NA -BRAF--AC002456.2 BS_593HEWBF 2.27030408702492 -1.91307187413938 NA NA differentially expressed no change NA NA 7:140787548 7:90479718 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:50.23Mb]],deletion/5'-5' BRAF NA AC002456.2 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -BRAF--AC006153.1 BS_593HEWBF 2.27030408702492 NA NA NA differentially expressed NA NA NA 7:140787548 7:90479718 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:50.21Mb]],deletion/5'-5' BRAF NA AC006153.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -BRAF--ANTXR1 BS_044XZ8ST 1.85547105410597 2.97839096214668 NA NA no change differentially expressed NA NA 7:140794308 2:69170248 ARRIBA in-frame 24 5 high [INTERCHROMOSOMAL[chr7--chr2]],translocation BRAF NA ANTXR1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -BRAF--CDK14 BS_593HEWBF 2.27030408702492 1.46533058512729 NA NA differentially expressed no change NA NA 7:140787548 7:90479718 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:49.51Mb]],deletion/5'-5' BRAF NA CDK14 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase NA NA NA -BRAF--CLDN12 BS_593HEWBF 2.27030408702492 0.487220473399658 NA NA differentially expressed no change NA NA 7:140787548 7:90479718 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:50.21Mb]],deletion/5'-5' BRAF NA CLDN12 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -BRAF--HIPK2 BS_GYA4V1RD 1.84573007831092 1.9433104184316 NA NA no change no change NA NA 7:140924566 7:139717015 ARRIBA frameshift 13 4 medium [INTRACHROMOSOMAL[chr7:0.94Mb]],deletion BRAF NA HIPK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA -BRAF--KIAA1549 BS_PQ7CQFYR 1.01127763659386 3.80729225545591 NA NA no change differentially expressed NA NA 7:140794308 7:138861456 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr7:1.74Mb]],deletion BRAF NA KIAA1549 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus, Oncogene NA NA NA -BRAF--KIAA1549 BS_PQ7CQFYR 1.01127763659386 3.80729225545591 NA NA no change differentially expressed NA NA 7:140776912 7:138871362 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:1.74Mb]],deletion BRAF NA KIAA1549 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus, Oncogene NA NA NA -BRAF--PID1 BS_BC936YNZ 1.80754609393609 1.12235864538734 NA NA no change no change NA NA 7:140794308 2:229026108 ARRIBA in-frame 20 0 high [INTERCHROMOSOMAL[chr7--chr2]],translocation BRAF NA PID1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -BRAF--RNF130 BS_E94QRJDW 1.64334146890491 -0.323695054296904 NA NA no change no change NA NA 7:140776912 5:180013311 ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation BRAF NA RNF130 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -BRAF--RNF130 BS_E94QRJDW 1.64334146890491 -0.323695054296904 NA NA no change no change NA NA 7:140739812 5:180013311 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation BRAF NA RNF130 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -BRAF--RNF130 BS_E94QRJDW 1.64334146890491 -0.323695054296904 NA NA no change no change NA NA 7:140776912 5:180040647 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation BRAF NA RNF130 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -BRAF--TPK1 BS_JKXA3FQC 1.3098198682233 1.67436416504261 NA NA no change no change NA NA 7:140834609 7:144601595 ARRIBA frameshift 16 3 high [INTRACHROMOSOMAL[chr7:3.53Mb]],inversion/5'-5' BRAF NA TPK1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA -BRAF--TRG-AS1 BS_49F4RAA4 0.773812262266101 15.8006760494219 NA NA no change differentially expressed NA NA 7:140787548 7:38350346 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:102.34Mb]],inversion BRAF NA TRG-AS1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -BRAF--TRIM24 BS_HX0S30NE 2.35413687712063 7.67335489597872 NA NA differentially expressed differentially expressed NA NA 7:140794308 7:138519189 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:2.13Mb]],inversion BRAF NA TRIM24 NA Kinase, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene NA NA TCGAFusion -BRAFP1(39382)/TTC3P1(115943)--GNL3L BS_37GTVG4N 5.95672964435437 10.4198511851624 5.77129610947035 NA differentially expressed differentially expressed differentially expressed NA X:75624888 X:54530352 ARRIBA other 6 2 medium [],duplication BRAFP1 TTC3P1 GNL3L NA NA NA NA NA NA -BRCA1--BRCA1 BS_JTMXAMB7 4.21681225628192 4.21681225628192 NA NA differentially expressed differentially expressed NA NA 17:43090944 17:43094860 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing BRCA1 NA BRCA1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -BRINP1--BRINP1 BS_3T6X4BPC 1.23480538180573 1.23480538180573 NA NA no change no change NA NA 9:119208719 9:119214155 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -BRINP1--BRINP1 BS_3W07B2TG 0.0152681203408005 0.0152681203408005 NA NA no change no change NA NA 9:119208719 9:119214155 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -BRINP1--BRINP1 BS_9BJARSX3 -1.26544843510156 -1.26544843510156 NA NA no change no change NA NA 9:119208719 9:119214155 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -BRINP1--BRINP1 BS_NB5XWMJT 1.13661099922563 1.13661099922563 NA NA no change no change NA NA 9:119208719 9:119214155 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -BRINP1--BRINP1 BS_QPPPGYP4 0.101550067046762 0.101550067046762 NA NA no change no change NA NA 9:119208719 9:119214155 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -BRINP1--BRINP1 BS_QWNBZ9RJ -0.708675481075049 -0.708675481075049 NA NA no change no change NA NA 9:119208719 9:119214155 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -BRINP1--BRINP1 BS_W7FP2G3F -0.861619546184219 -0.861619546184219 NA NA no change no change NA NA 9:119208719 9:119214155 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -BRINP1--BRINP1 BS_WRQHPSXQ 0.466823371814577 0.466823371814577 NA NA no change no change NA NA 9:119208719 9:119214155 ARRIBA frameshift 7 3 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -BRINP1--BRINP1 BS_X23724NJ -1.11140191666289 -1.11140191666289 NA NA no change no change NA NA 9:119208719 9:119214155 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -BRINP1--BRINP1 BS_ZA9XT151 -1.86374443588536 -1.86374443588536 NA NA no change no change NA NA 9:119208719 9:119214155 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -BRINP1--BRINP1 BS_ZR96A4FH 0.555906509721534 0.555906509721534 NA NA no change no change NA NA 9:119238655 9:119249150 ARRIBA frameshift 7 3 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -BRIP1--BRIP1 BS_GE2RVZE6 2.86609256664677 2.86609256664677 NA NA differentially expressed differentially expressed NA NA 17:61776401 17:61799299 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.18Mb]],duplication/non-canonical_splicing BRIP1 NA BRIP1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -BRPF3--AC103798.2 BS_6JHXXVR7 1.83561935572823 NA NA NA no change NA NA NA 6:36207444 11:38013629 ARRIBA frameshift 11 0 high [INTERCHROMOSOMAL[chr6--chr11]],translocation/5'-5' BRPF3 NA AC103798.2 NA NA NA NA NA NA -BRPF3--AC103798.2 BS_KE56MMY0 2.00835404581534 NA NA NA differentially expressed NA NA NA 6:36207444 11:38013629 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr6--chr11]],translocation/5'-5' BRPF3 NA AC103798.2 NA NA NA NA NA NA -BRPF3--AC103798.2(41622)/LRRC6P1(155626) BS_6JHXXVR7 1.83561935572823 NA NA -0.0573232122835916 no change NA NA no change 6:36207444 11:38055763 ARRIBA frameshift 7 0 high [],translocation BRPF3 NA AC103798.2 LRRC6P1 NA NA NA NA NA -BRSK1--HSPD1P15(167731)/CDH18(70733) BS_6JHXXVR7 -2.31775562603067 -0.0370656907136378 NA -1.72930683827661 differentially expressed no change NA no change 19:55289620 5:19402218 ARRIBA frameshift 85 15 high [],translocation BRSK1 NA HSPD1P15 CDH18 Kinase, TumorSuppressorGene, Kinase NA NA NA NA -BRSK1--HSPD1P15(167731)/CDH18(70733) BS_KE56MMY0 -2.58390344185451 -0.0370656907136378 NA -1.74914738815675 differentially expressed no change NA no change 19:55289620 5:19402218 ARRIBA frameshift 16 2 high [],translocation BRSK1 NA HSPD1P15 CDH18 Kinase, TumorSuppressorGene, Kinase NA NA NA NA -BRSK2--AL078612.2 BS_49FQXT2E -2.26092819987393 NA NA NA differentially expressed NA NA NA 11:1390375 11:32143144 ARRIBA frameshift 49 3 high [INTRACHROMOSOMAL[chr11:30.67Mb]],deletion BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA -BRSK2--AL078612.2 BS_49FQXT2E -2.26092819987393 NA NA NA differentially expressed NA NA NA 11:1390375 11:32137121 ARRIBA frameshift 9 3 high [INTRACHROMOSOMAL[chr11:30.67Mb]],deletion BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA -BRSK2--THEM7P BS_49FQXT2E -2.26092819987393 -0.488102983182883 NA NA differentially expressed no change NA NA 11:1390375 11:32226684 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr11:30.65Mb]],deletion/5'-5' BRSK2 NA THEM7P NA Kinase, Kinase NA NA NA NA -BSG--POLRMT(2433)/AC004449.1(1068) BS_4PH1MBGR 0.773584076829009 1.36996401855981 NA NA no change no change NA NA 19:581499 19:636037 ARRIBA frameshift 40 0 medium [],inversion BSG NA POLRMT AC004449.1 NA NA NA NA NA -BSG(958)/HCN2(5442)--FZD8 BS_KZPR01BD -0.682873409863144 1.33995056524175 0.091491906890565 NA no change no change no change NA 19:584451 10:35640192 ARRIBA other 2 0 medium [],translocation BSG HCN2 FZD8 NA NA NA NA NA NA -BTBD8--TGFBR3 BS_SXRS2P6T 3.24914210750381 3.4412276777406 NA NA differentially expressed differentially expressed NA NA 1:92080720 1:91806792 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr1:0.17Mb]],duplication/5'-5' BTBD8 NA TGFBR3 NA NA TumorSuppressorGene, Oncogene NA NA NA -BTG3-AS1(218)/AP000432.1(25859)--BTG3-AS1 BS_XHCYEE2S NA NA -1.04811766606544 NA NA NA no change NA 21:17633417 21:17622746 ARRIBA other 5 0 medium [],duplication BTG3-AS1 AP000432.1 BTG3-AS1 NA NA NA NA NA NA -BTRC--RPS27P18(71051)/TEX36-AS1(29388) BS_JAEM78XS 0.0589249791201992 -0.0294627825494395 NA NA no change no change NA NA 10:101479457 10:125544983 ARRIBA frameshift 2 0 medium [],inversion BTRC NA RPS27P18 TEX36-AS1 Oncogene NA NA NA NA -BTRC--TEX36 BS_JAEM78XS 0.0589249791201992 51.7284664439215 NA NA no change differentially expressed NA NA 10:101479457 10:125576874 ARRIBA in-frame 14 0 high [INTRACHROMOSOMAL[chr10:24.02Mb]],inversion BTRC NA TEX36 NA Oncogene NA NA NA NA -BZW1--ST6GAL2 BS_RRAEQZ97 3.37856609240856 3.88125222231647 NA NA differentially expressed differentially expressed NA NA 2:200811990 2:106844034 ARRIBA other 14 0 medium [INTRACHROMOSOMAL[chr2:93.92Mb]],inversion BZW1 NA ST6GAL2 NA NA NA NA NA NA -BZW1--ST6GAL2 BS_RRAEQZ97 3.37856609240856 3.88125222231647 NA NA differentially expressed differentially expressed NA NA 2:200811946 2:106844034 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:93.92Mb]],inversion BZW1 NA ST6GAL2 NA NA NA NA NA NA -C10orf76--C10orf76 BS_TG93XC55 -0.866465409608856 -0.866465409608856 NA NA no change no change NA NA 10:101889412 10:101995355 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.21Mb]],duplication/non-canonical_splicing C10orf76 NA C10orf76 NA NA NA NA NA NA -C11orf24--DGKZ BS_B1C6GZ84 2.07437942570267 -1.56393564333374 NA NA differentially expressed no change NA NA 11:68268054 11:46367291 ARRIBA other 9 2 high [INTRACHROMOSOMAL[chr11:21.88Mb]],inversion C11orf24 NA DGKZ NA NA NA NA NA NA -C11orf58--C11orf58 BS_2ADZNNV4 0.186294663634976 0.186294663634976 NA NA no change no change NA NA 11:16655255 11:16645989 ARRIBA other 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr11:0.14Mb]],duplication C11orf58 NA C11orf58 NA NA NA NA NA NA -C11orf58--C11orf58 BS_2KJ2YAZR 0.505332731725763 0.505332731725763 NA NA no change no change NA NA 11:16655255 11:16645989 ARRIBA other 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr11:0.14Mb]],duplication C11orf58 NA C11orf58 NA NA NA NA NA NA -C11orf58--C11orf58 BS_FRM9TG02 0.26320692503096 0.26320692503096 NA NA no change no change NA NA 11:16655255 11:16645989 ARRIBA other 2 1 medium [SELFIE,INTRACHROMOSOMAL[chr11:0.14Mb]],duplication C11orf58 NA C11orf58 NA NA NA NA NA NA -C11orf58--C11orf58 BS_NS7GSHB9 1.35944678116619 1.35944678116619 NA NA no change no change NA NA 11:16655255 11:16645989 ARRIBA other 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr11:0.14Mb]],duplication C11orf58 NA C11orf58 NA NA NA NA NA NA -C11orf95--AL359999.1(31965)/APIP(77930) BS_J70GK8SM 2.10553480568594 NA NA -0.461304039462421 differentially expressed NA NA no change 11:63763524 11:34775164 ARRIBA frameshift 11 2 medium [],deletion C11orf95 NA AL359999.1 APIP NA NA NA NA NA -C11orf95--LBHD1 BS_H4NXBD2D 4.35359837542632 1.19196398023988 NA NA differentially expressed no change NA NA 11:63763687 11:62667747 ARRIBA other 2 2 high [INTRACHROMOSOMAL[chr11:1.09Mb]],inversion/3'-3' C11orf95 NA LBHD1 NA NA NA NA NA NA -C11orf95--LRP5 BS_SXCZ3CXN 4.62031746532604 4.8534222559129 NA NA differentially expressed differentially expressed NA NA 11:63764630 11:68407007 ARRIBA frameshift 16 4 medium [INTRACHROMOSOMAL[chr11:4.54Mb]],inversion C11orf95 NA LRP5 NA NA Oncogene NA NA NA -C11orf95--MAML2 BS_J70GK8SM 2.10553480568594 7.17318274116564 NA NA differentially expressed differentially expressed NA NA 11:63763520 11:96093517 ARRIBA in-frame 24 7 high [INTRACHROMOSOMAL[chr11:32.21Mb]],duplication C11orf95 NA MAML2 NA NA CosmicCensus, Oncogene NA NA NA -C11orf95--METTL12 BS_H4NXBD2D 4.35359837542632 1.08218981294325 NA NA differentially expressed no change NA NA 11:63765368 11:62667774 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr11:1.09Mb]],inversion C11orf95 NA METTL12 NA NA NA NA NA NA -C11orf95--NCOA1 BS_74G5K7JF 3.44066350681856 2.34324479221579 NA NA differentially expressed differentially expressed NA NA 11:63765807 2:24726589 ARRIBA in-frame 49 0 high [INTERCHROMOSOMAL[chr11--chr2]],translocation C11orf95 NA NCOA1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -C11orf95--NCOA2 BS_TZ5D0A7R 4.72643266901602 5.87172112426916 NA NA differentially expressed differentially expressed NA NA 11:63763616 8:70138332 ARRIBA frameshift 34 16 high [INTERCHROMOSOMAL[chr11--chr8]],translocation C11orf95 NA NCOA2 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_07ANYSYQ 4.29826190280346 3.97585737028289 NA NA differentially expressed differentially expressed NA NA 11:63764518 11:65662076 ARRIBA in-frame 136 3 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_0WQJP6ZG 3.81878607332284 2.68699342393284 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 52 8 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_0WQJP6ZG 3.81878607332284 2.68699342393284 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_0XEG6SNV 4.93417458854812 4.61048400802179 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 25 0 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_0XEG6SNV 4.93417458854812 4.61048400802179 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662088 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_4NWHYH53 4.53828300732576 3.8942299264604 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 88 12 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_4NWHYH53 4.53828300732576 3.8942299264604 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662088 ARRIBA in-frame 2 8 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_4NWHYH53 4.53828300732576 3.8942299264604 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 12 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_4NWHYH53 4.53828300732576 3.8942299264604 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662088 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_6MZ7FRZH 4.48421640185791 5.46360715535048 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 297 5 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_6MZ7FRZH 4.48421640185791 5.46360715535048 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662088 ARRIBA in-frame 29 1 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_7G42J2SK 4.00690888067391 4.35949074949949 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65655935 ARRIBA in-frame 98 1 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_7G42J2SK 4.00690888067391 4.35949074949949 NA NA differentially expressed differentially expressed NA NA 11:63768484 11:65655935 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_C05FKR8X 5.91473108899467 4.57124562858994 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 248 35 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_C05FKR8X 5.91473108899467 4.57124562858994 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662088 ARRIBA in-frame 32 13 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_C05FKR8X 5.91473108899467 4.57124562858994 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 35 0 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_C05FKR8X 5.91473108899467 4.57124562858994 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662088 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_CXVJK2FY 3.91627764253082 4.50810336207501 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 82 0 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_CXVJK2FY 3.91627764253082 4.50810336207501 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662088 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_CZ3ER8DY 3.89008167453102 4.03965363581365 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 88 1 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_CZ3ER8DY 3.89008167453102 4.03965363581365 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662088 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_CZ3NA7KV 3.73241317135758 3.75330104585591 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 47 0 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_CZ3NA7KV 3.73241317135758 3.75330104585591 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662088 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_EK5PCKY0 2.83030160813892 3.12538873402916 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 35 1 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_FTKPQ5FZ 6.18489671018741 4.49080755069457 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 124 17 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_FTKPQ5FZ 6.18489671018741 4.49080755069457 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662088 ARRIBA in-frame 9 11 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_FTKPQ5FZ 6.18489671018741 4.49080755069457 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_FW5ECXXK 3.46067721739119 3.18961498927351 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 81 20 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_FW5ECXXK 3.46067721739119 3.18961498927351 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_G23JJAZY 4.27120134451453 4.13452360301398 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662441 ARRIBA in-frame 89 33 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_G23JJAZY 4.27120134451453 4.13452360301398 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 95 18 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_G23JJAZY 4.27120134451453 4.13452360301398 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662088 ARRIBA in-frame 2 12 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_G23JJAZY 4.27120134451453 4.13452360301398 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 7 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_G63HYD6N 5.72441050162175 4.95228108716172 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 584 190 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_G63HYD6N 5.72441050162175 4.95228108716172 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 63 1 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_H4NXBD2D 4.35359837542632 4.28943147545753 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 36 0 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_H4NXBD2D 4.35359837542632 4.28943147545753 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662088 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_KBT7MQ6H 5.5111378320735 5.32523418850425 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 125 5 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_KBT7MQ6H 5.5111378320735 5.32523418850425 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 15 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_KBT7MQ6H 5.5111378320735 5.32523418850425 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662347 ARRIBA frameshift 1 7 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_KBT7MQ6H 5.5111378320735 5.32523418850425 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662088 ARRIBA in-frame 1 3 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_KBT7MQ6H 5.5111378320735 5.32523418850425 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662088 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_MQCKXD60 5.30089157842654 4.09977894626653 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_MT15SGJN 3.50461475732844 3.3747595646412 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 144 25 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_N5DVEJXT 5.49771438281932 5.1039710042587 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 410 77 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_N5DVEJXT 5.49771438281932 5.1039710042587 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 24 0 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_N5DVEJXT 5.49771438281932 5.1039710042587 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662088 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_NB42PWZN 5.88272008935557 5.34465212084127 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 282 16 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_NB42PWZN 5.88272008935557 5.34465212084127 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662088 ARRIBA in-frame 2 10 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_NGHK9RZP 5.02055255084435 5.33970834116522 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 290 80 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_NGHK9RZP 5.02055255084435 5.33970834116522 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 7 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_NGHK9RZP 5.02055255084435 5.33970834116522 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662088 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_QSTAVWGE 1.81507422250582 2.17271059233018 NA NA no change differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_QXKRN6CR 5.3916309839366 4.50424394209314 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 161 49 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_QXKRN6CR 5.3916309839366 4.50424394209314 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 10 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_QXKRN6CR 5.3916309839366 4.50424394209314 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662088 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_SXCZ3CXN 4.62031746532604 5.30797066638922 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 468 177 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_SXCZ3CXN 4.62031746532604 5.30797066638922 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 144 5 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_SXCZ3CXN 4.62031746532604 5.30797066638922 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662088 ARRIBA in-frame 6 2 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_T1DVKKJB 6.48658765188245 6.13886450164672 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 600 211 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_T1DVKKJB 6.48658765188245 6.13886450164672 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 21 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_T1DVKKJB 6.48658765188245 6.13886450164672 NA NA differentially expressed differentially expressed NA NA 11:63768484 11:65662205 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_T1DVKKJB 6.48658765188245 6.13886450164672 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662088 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_VAAHBH60 5.84290434698574 5.40743688847517 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 90 9 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_VAAHBH60 5.84290434698574 5.40743688847517 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662088 ARRIBA in-frame 5 4 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_VAAHBH60 5.84290434698574 5.40743688847517 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_W80TJC27 3.38576384730861 3.80137213701998 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 41 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_W80TJC27 3.38576384730861 3.80137213701998 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662088 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_XF0ZX2B3 2.79144411942699 3.17999835764806 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662205 ARRIBA in-frame 31 0 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_XF0ZX2B3 2.79144411942699 3.17999835764806 NA NA differentially expressed differentially expressed NA NA 11:63765807 11:65662088 ARRIBA in-frame 7 0 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA BS_Z7890YNR 5.99402775088314 5.48246792679446 NA NA differentially expressed differentially expressed NA NA 11:63764868 11:65662205 ARRIBA in-frame 220 27 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA(2327)/RN7SL309P(30131) BS_6MZ7FRZH 4.48421640185791 5.46360715535048 NA -0.127540765796411 differentially expressed differentially expressed NA no change 11:63763687 11:65665421 ARRIBA other 8 2 medium [],deletion C11orf95 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA(440)/RN7SL309P(32018) BS_VAAHBH60 5.84290434698574 5.40743688847517 NA 7.26510464780709 differentially expressed differentially expressed NA differentially expressed 11:63764836 11:65663534 ARRIBA frameshift 128 8 high [],duplication C11orf95 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA -C11orf95--RELA(806)/RN7SL309P(31652) BS_QXKRN6CR 5.3916309839366 4.50424394209314 NA -0.127540765796411 differentially expressed differentially expressed NA no change 11:63764856 11:65663900 ARRIBA frameshift 5 0 low [],duplication C11orf95 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA -C11orf98--RPL4P1(8351)/TRAV6(8592) BS_PGK832G2 -0.841729191234716 -0.027996780375973 NA -0.137765161946345 no change no change NA no change 11:62663236 14:21759897 ARRIBA frameshift 4 0 high [],translocation C11orf98 NA RPL4P1 TRAV6 NA NA NA NA NA -C12orf40--SLC2A13 BS_HJRTC9JQ -0.616082002197521 1.76395344882381 NA NA no change no change NA NA 12:39822629 12:40048210 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/3'-3' C12orf40 NA SLC2A13 NA NA NA NA NA NA -C16orf45--COA1 BS_401R3KV0 -0.783691215245893 0.17713819295914 NA NA no change no change NA NA 16:15515428 7:43648652 ARRIBA frameshift 19 3 high [INTERCHROMOSOMAL[chr16--chr7]],translocation C16orf45 NA COA1 NA NA NA NA NA NA -C16orf97--LINC00919 BS_S6S7SK3P 28.3127656478993 66.8531327682464 NA NA differentially expressed differentially expressed NA NA 16:52058368 16:52084566 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr16:0.00Mb],LOCAL_REARRANGEMENT:-:[4591]],duplication C16orf97 NA LINC00919 NA NA NA NA NA NA -C18orf54--AC040963.1(21361)/SEC11C(33135) BS_TW8DQH8J 3.61461169715418 NA NA -3.03515430856235 differentially expressed NA NA differentially expressed 18:54359517 18:59106342 ARRIBA other 1 1 medium [],deletion C18orf54 NA AC040963.1 SEC11C NA NA NA NA NA -C19orf60--SH3KBP1 BS_W80TJC27 -2.36287219509376 -0.382944079235092 NA NA differentially expressed no change NA NA 19:18588900 X:19569188 ARRIBA frameshift 10 0 high [INTERCHROMOSOMAL[chr19--chrX]],translocation C19orf60 NA SH3KBP1 NA NA NA NA NA NA -C19orf60--SH3KBP1 BS_W80TJC27 -2.36287219509376 -0.382944079235092 NA NA differentially expressed no change NA NA 19:18589077 X:19569188 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr19--chrX]],translocation C19orf60 NA SH3KBP1 NA NA NA NA NA NA -C1orf112--C1orf112 BS_FEPRNEXX 0.189924370958677 0.189924370958677 NA NA no change no change NA NA 1:169806088 1:169798857 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.19Mb]],duplication/non-canonical_splicing C1orf112 NA C1orf112 NA NA NA NA NA NA -C1orf27(3883)/AL596220.1(9900)--C1orf27 BS_Y8D1F5WW -0.411787356198644 -0.411787356198644 NA NA no change no change NA NA 1:186425261 1:186390712 ARRIBA other 3 0 medium [],duplication C1orf27 AL596220.1 C1orf27 NA NA NA NA NA NA -C1orf27(3883)/AL596220.1(9900)--C1orf27 BS_ZV68CES9 2.46330788543142 2.46330788543142 NA NA differentially expressed differentially expressed NA NA 1:186425261 1:186390712 ARRIBA other 2 0 low [],duplication C1orf27 AL596220.1 C1orf27 NA NA NA NA NA NA -C1orf27(3919)/AL596220.1(9864)--C1orf27 BS_DGTPWJ59 0.164816440084719 0.164816440084719 NA NA no change no change NA NA 1:186425297 1:186390711 ARRIBA other 5 0 medium [],duplication C1orf27 AL596220.1 C1orf27 NA NA NA NA NA NA -C1orf27(3968)/AL596220.1(9815)--C1orf27 BS_ZH1FBX50 -0.795458980819252 -0.795458980819252 NA NA no change no change NA NA 1:186425346 1:186390711 ARRIBA other 1 0 low [],duplication C1orf27 AL596220.1 C1orf27 NA NA NA NA NA NA -C1orf61--PCDHGC3 BS_M8M56Z4Y 0.742805241041039 3.51345393038425 NA NA no change differentially expressed NA NA 1:156407081 5:141476533 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr1--chr5]],translocation C1orf61 NA PCDHGC3 NA NA TumorSuppressorGene NA NA NA -C1QTNF3-AMACR--AC138409.2 BS_37GTVG4N 1.52308200492499 NA NA NA no change NA NA NA 5:34108948 5:34169153 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[40170]],duplication C1QTNF3-AMACR NA AC138409.2 NA NA NA NA NA NA -C1QTNF3-AMACR--AC138409.2 BS_37GTVG4N 1.52308200492499 NA NA NA no change NA NA NA 5:33998641 5:34169153 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[40170]],duplication C1QTNF3-AMACR NA AC138409.2 NA NA NA NA NA NA -C1QTNF3-AMACR--AC138409.2 BS_37GTVG4N 1.52308200492499 NA NA NA no change NA NA NA 5:34124418 5:34179097 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[40170]],duplication C1QTNF3-AMACR NA AC138409.2 NA NA NA NA NA NA -C1QTNF3-AMACR--AC138409.2 BS_KN92S7YQ 1.06915274425644 NA NA NA no change NA NA NA 5:34108948 5:34169153 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[40170]],duplication C1QTNF3-AMACR NA AC138409.2 NA NA NA NA NA NA -C1QTNF3-AMACR--AC138409.2 BS_QEYPFYHD 0.990746805189682 NA NA NA no change NA NA NA 5:34108948 5:34182867 ARRIBA frameshift 2 1 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[40170]],duplication C1QTNF3-AMACR NA AC138409.2 NA NA NA NA NA NA -C1QTNF3-AMACR(33007)/AC139792.1(586)--AC138409.2 BS_QEYPFYHD 0.990746805189682 NA NA NA no change NA NA NA 5:34157535 5:34182867 ARRIBA other 1 0 low [],duplication C1QTNF3-AMACR AC139792.1 AC138409.2 NA NA NA NA NA NA -C1QTNF4(21304)/MTCH2(1352)--MTCH2 BS_N6NE6B3W 1.15901918244429 0.576437938072395 0.576437938072395 NA no change no change no change NA 11:47615963 11:47622776 ARRIBA other 1 0 low [],duplication C1QTNF4 MTCH2 MTCH2 NA NA NA NA NA NA -C20orf27--VWA3A BS_NGHK9RZP -0.877196413499941 2.84617061295798 NA NA no change differentially expressed NA NA 20:3753959 16:22142668 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr20--chr16]],translocation C20orf27 NA VWA3A NA NA NA NA NA NA -C22orf34--C22orf34 BS_8ZS9F31R 4.31498008726684 4.31498008726684 NA NA differentially expressed differentially expressed NA NA 22:49559525 22:49567820 ARRIBA other 3 1 high [SELFIE,INTRACHROMOSOMAL[chr22:0.24Mb]],inversion/5'-5' C22orf34 NA C22orf34 NA NA NA NA NA NA -C2CD2L--DIXDC1 BS_5PJCHF6V -0.998288285854841 -0.579707473905375 NA NA no change no change NA NA 11:119112392 11:112010034 ARRIBA frameshift 2 2 high [INTRACHROMOSOMAL[chr11:7.08Mb]],duplication C2CD2L NA DIXDC1 NA NA NA NA NA NA -C2CD2L--DIXDC1 BS_5PJCHF6V -0.998288285854841 -0.579707473905375 NA NA no change no change NA NA 11:119112392 11:112016691 ARRIBA in-frame 1 1 high [INTRACHROMOSOMAL[chr11:7.08Mb]],duplication C2CD2L NA DIXDC1 NA NA NA NA NA NA -C2CD3--MACROD1 BS_VAAHBH60 4.25296925918212 -1.83376536467715 NA NA differentially expressed no change NA NA 11:74074253 11:64152393 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:9.85Mb]],deletion C2CD3 NA MACROD1 NA NA Oncogene NA NA NA -C2CD3--MACROD1(10889)/STIP1(8277) BS_VAAHBH60 4.25296925918212 -1.83376536467715 NA 1.30690006630198 differentially expressed no change NA no change 11:74074253 11:64176995 ARRIBA frameshift 3 1 high [],deletion C2CD3 NA MACROD1 STIP1 NA Oncogene NA NA NA -C2orf16--BHMT BS_CYEY58NY -0.330464883621995 19.5010816515919 NA NA no change differentially expressed NA NA 2:27558009 5:79130933 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr2--chr5]],translocation/3'-3' C2orf16 NA BHMT NA NA NA NA NA NA -C2orf27A--LINC01087(35094)/C2orf27A(37666) BS_1EBQ3T20 3.82476558009624 -0.296494408993531 NA 3.82476558009624 differentially expressed no change NA differentially expressed 2:131751585 2:131684709 ARRIBA other 5 0 high [],duplication C2orf27A NA LINC01087 C2orf27A NA NA NA NA NA -C2orf72--AC073409.1(225050)/AC092646.2(25807) BS_RRAEQZ97 -0.830536026475213 -0.0294627825494395 NA -0.0689251118163292 no change no change NA no change 2:231041409 2:123669495 ARRIBA frameshift 4 0 high [],inversion C2orf72 NA AC073409.1 AC092646.2 NA NA NA NA NA -C2orf74--KIAA1841 BS_8Q77HZ4R -3.65786925161478 -0.208248839433103 NA NA differentially expressed no change NA NA 2:61158012 2:61108317 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[7034]],duplication C2orf74 NA KIAA1841 NA NA NA NA NA NA -C2orf74--KIAA1841 BS_8Q77HZ4R -3.65786925161478 -0.208248839433103 NA NA differentially expressed no change NA NA 2:61145196 2:61108317 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[7034]],duplication C2orf74 NA KIAA1841 NA NA NA NA NA NA -C2orf88--PCBP1-AS1 BS_RRAEQZ97 0.359592849616454 1.55116787293628 NA NA no change no change NA NA 2:190181109 2:70085624 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr2:119.78Mb]],inversion C2orf88 NA PCBP1-AS1 NA NA NA NA NA NA -C3orf22--TXNRD3 BS_1EBQ3T20 10.4603518598488 8.58112906915069 NA NA differentially expressed differentially expressed NA NA 3:126549537 3:126647296 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr3:0.05Mb],LOCAL_REARRANGEMENT:-:[48087]],duplication C3orf22 NA TXNRD3 NA NA NA NA NA NA -C3orf35--GOLGA4(11451)/C3orf35(8067) BS_FEPRNEXX 1.87401440677103 1.60713630786371 NA 1.87401440677103 no change no change NA no change 3:37386370 3:37378202 ARRIBA other 1 0 low [],duplication C3orf35 NA GOLGA4 C3orf35 NA NA NA NA NA -C3orf35--GOLGA4(12291)/C3orf35(7227) BS_2SFTWNVE 0.306557245919461 1.2173705732662 NA 0.306557245919461 no change no change NA no change 3:37416724 3:37379042 ARRIBA other 1 1 high [],duplication C3orf35 NA GOLGA4 C3orf35 NA NA NA NA NA -C3orf35--GOLGA4(12291)/C3orf35(7227) BS_AMQGM1V9 -0.351274262355605 0.909106111008437 NA -0.351274262355605 no change no change NA no change 3:37399659 3:37379042 ARRIBA other 1 0 low [],duplication C3orf35 NA GOLGA4 C3orf35 NA NA NA NA NA -C3orf35--GOLGA4(12291)/C3orf35(7227) BS_KVNGNETA 1.94479163108832 2.82289877509181 NA 1.94479163108832 no change differentially expressed NA no change 3:37416724 3:37379042 ARRIBA other 1 1 high [],duplication C3orf35 NA GOLGA4 C3orf35 NA NA NA NA NA -C3orf35--GOLGA4(13520)/C3orf35(5998) BS_8D0NYM46 0.0341231882197088 3.02289843457641 NA 0.0341231882197088 no change differentially expressed NA no change 3:37416724 3:37380271 ARRIBA other 1 0 low [],duplication C3orf35 NA GOLGA4 C3orf35 NA NA NA NA NA -C3orf35--GOLGA4(16475)/C3orf35(3043) BS_7FWZ518S 0.375171799439705 1.99009334785471 NA 0.375171799439705 no change no change NA no change 3:37417492 3:37383226 ARRIBA frameshift 1 0 low [],duplication C3orf35 NA GOLGA4 C3orf35 NA NA NA NA NA -C3orf35--GOLGA4(18390)/C3orf35(1128) BS_T2QPMZCM 0.491557196034561 1.75211282719631 NA 0.491557196034561 no change no change NA no change 3:37416724 3:37385141 ARRIBA other 1 0 low [],duplication C3orf35 NA GOLGA4 C3orf35 NA NA NA NA NA -C3orf35--GOLGA4(18390)/C3orf35(1128) BS_ZRM0W01M 0.887804557160587 2.01119496793936 NA 0.887804557160587 no change differentially expressed NA no change 3:37386370 3:37385141 ARRIBA other 1 0 low [],duplication C3orf35 NA GOLGA4 C3orf35 NA NA NA NA NA -C3orf70--ATG7 BS_7GJT4A6A 3.05938804404061 4.18082253456143 NA NA differentially expressed differentially expressed NA NA 3:185152628 3:11358418 ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr3:173.52Mb]],inversion C3orf70 NA ATG7 NA NA NA NA NA NA -C3orf70--CCDC68 BS_4B0BAVTX 2.84219995874723 3.41484562485447 NA NA differentially expressed differentially expressed NA NA 3:185131991 18:54919376 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr3--chr18]],translocation C3orf70 NA CCDC68 NA NA NA NA NA NA -C3orf70--CCDC68 BS_4B0BAVTX 2.84219995874723 3.41484562485447 NA NA differentially expressed differentially expressed NA NA 3:185152628 18:54919376 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr3--chr18]],translocation C3orf70 NA CCDC68 NA NA NA NA NA NA -C4orf50--C4orf50 BS_K5802F84 1.38946620410144 1.38946620410144 NA NA no change no change NA NA 4:6007996 4:6011968 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing C4orf50 NA C4orf50 NA NA NA NA NA NA -C4orf50--C4orf50 BS_KPT2WPHW 2.1662785887935 2.1662785887935 NA NA differentially expressed differentially expressed NA NA 4:6007996 4:6011968 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing C4orf50 NA C4orf50 NA NA NA NA NA NA -C4orf50--C4orf50 BS_NT9NZYFD 0.195297232727021 0.195297232727021 NA NA no change no change NA NA 4:6007996 4:6011968 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing C4orf50 NA C4orf50 NA NA NA NA NA NA -C4orf50--C4orf50 BS_ZR96A4FH 1.9349946835411 1.9349946835411 NA NA no change no change NA NA 4:6007996 4:6011968 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing C4orf50 NA C4orf50 NA NA NA NA NA NA -C5orf24--CAMLG BS_J8G4SH4Z 2.23450767581876 0.204376087083243 NA NA differentially expressed no change NA NA 5:134846212 5:134738699 ARRIBA other 27 3 high [INTRACHROMOSOMAL[chr5:0.09Mb],LOCAL_REARRANGEMENT:+:[93520]],duplication C5orf24 NA CAMLG NA NA NA NA NA NA -C5orf24--CAMLG BS_J8G4SH4Z 2.23450767581876 0.204376087083243 NA NA differentially expressed no change NA NA 5:134846212 5:134741063 ARRIBA other 17 2 high [INTRACHROMOSOMAL[chr5:0.09Mb],LOCAL_REARRANGEMENT:+:[93520]],duplication C5orf24 NA CAMLG NA NA NA NA NA NA -C5orf24--CAMLG BS_J8G4SH4Z 2.23450767581876 0.204376087083243 NA NA differentially expressed no change NA NA 5:134846212 5:134750759 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.09Mb],LOCAL_REARRANGEMENT:+:[93520]],duplication C5orf24 NA CAMLG NA NA NA NA NA NA -C5orf42--C5orf42 BS_M4TTKPNR -0.203180101508774 -0.203180101508774 NA NA no change no change NA NA 5:37122430 5:37239869 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.14Mb]],duplication/non-canonical_splicing C5orf42 NA C5orf42 NA NA NA NA NA NA -C5orf42--C5orf42 BS_S1KK7XRH 0.736740762557277 0.736740762557277 NA NA no change no change NA NA 5:37122430 5:37239869 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.14Mb]],duplication/non-canonical_splicing C5orf42 NA C5orf42 NA NA NA NA NA NA -C5orf42--C5orf42 BS_SDZY6RZ3 0.719585576798057 0.719585576798057 NA NA no change no change NA NA 5:37226304 5:37227817 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.14Mb]],duplication/non-canonical_splicing C5orf42 NA C5orf42 NA NA NA NA NA NA -C5orf64--C5orf64 BS_2KJ2YAZR 0.340388583662162 0.340388583662162 NA NA no change no change NA NA 5:61755944 5:61703866 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.11Mb]],duplication C5orf64 NA C5orf64 NA NA NA NA NA NA -C5orf64--C5orf64 BS_HA20Y4XY 2.14704279762889 2.14704279762889 NA NA differentially expressed differentially expressed NA NA 5:61755944 5:61703866 ARRIBA other 7 1 medium [SELFIE,INTRACHROMOSOMAL[chr5:0.11Mb]],duplication C5orf64 NA C5orf64 NA NA NA NA NA NA -C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_0Y66ZBWE 2.17950919346565 2.17950919346565 NA NA differentially expressed differentially expressed NA NA 5:61755944 5:61703866 ARRIBA other 3 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_398KYV92 0.63137227908414 0.63137227908414 NA NA no change no change NA NA 5:61755944 5:61686883 ARRIBA other 1 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_55P8HPYD 2.5947748122099 2.5947748122099 NA NA differentially expressed differentially expressed NA NA 5:61755944 5:61686883 ARRIBA other 1 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_5CMGN56B 1.76317645494336 1.76317645494336 NA NA no change no change NA NA 5:61755944 5:61703866 ARRIBA other 1 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_8RCR7Y4B 2.37205444351926 2.37205444351926 NA NA differentially expressed differentially expressed NA NA 5:61755944 5:61703866 ARRIBA other 2 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_AD4JPN9Q 0.405642573017572 0.405642573017572 NA NA no change no change NA NA 5:61755944 5:61686883 ARRIBA other 4 0 medium [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_CREQ97QC 0.750050317951123 0.750050317951123 NA NA no change no change NA NA 5:61755944 5:61686883 ARRIBA other 2 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_CZ82ANWP 1.92056021624206 1.92056021624206 NA NA no change no change NA NA 5:61755944 5:61686883 ARRIBA other 5 0 medium [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_E4QK839R 1.02430426934421 1.02430426934421 NA NA no change no change NA NA 5:61755944 5:61686883 ARRIBA other 2 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_EHVYJAVA 1.57127532103663 1.57127532103663 NA NA no change no change NA NA 5:61755944 5:61748602 ARRIBA other 3 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_ET8CJXSF 1.13126955589948 1.13126955589948 NA NA no change no change NA NA 5:61755944 5:61703866 ARRIBA other 1 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_HA20Y4XY 2.14704279762889 2.14704279762889 NA NA differentially expressed differentially expressed NA NA 5:61755944 5:61748602 ARRIBA other 2 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_NT9NZYFD 1.25249934551738 1.25249934551738 NA NA no change no change NA NA 5:61755944 5:61686883 ARRIBA other 4 0 medium [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_RVSEDNJ4 3.08533827069351 3.08533827069351 NA NA differentially expressed differentially expressed NA NA 5:61755944 5:61686883 ARRIBA other 4 0 medium [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_YNEQJ6AH 3.94786863111866 3.94786863111866 NA NA differentially expressed differentially expressed NA NA 5:61755944 5:61748602 ARRIBA other 3 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(9259)/AC026434.2(70925)--C5orf64 BS_2ADZNNV4 1.01287060734333 1.01287060734333 NA NA no change no change NA NA 5:61761022 5:61686883 ARRIBA other 2 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(9259)/AC026434.2(70925)--C5orf64 BS_2XD3MNKD 2.25629633384216 2.25629633384216 NA NA differentially expressed differentially expressed NA NA 5:61761022 5:61686883 ARRIBA other 2 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(9259)/AC026434.2(70925)--C5orf64 BS_39CGACC7 1.64022971833629 1.64022971833629 NA NA no change no change NA NA 5:61761022 5:61686883 ARRIBA other 1 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(9259)/AC026434.2(70925)--C5orf64 BS_ERJAJ0KA 2.34104144369954 2.34104144369954 NA NA differentially expressed differentially expressed NA NA 5:61761022 5:61686883 ARRIBA other 2 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(9259)/AC026434.2(70925)--C5orf64 BS_FWMJPKCV 1.84236243305594 1.84236243305594 NA NA no change no change NA NA 5:61761022 5:61703866 ARRIBA other 4 0 high [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(9259)/AC026434.2(70925)--C5orf64 BS_KXH37MPN 2.22714577779287 2.22714577779287 NA NA differentially expressed differentially expressed NA NA 5:61761022 5:61686883 ARRIBA other 1 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(9259)/AC026434.2(70925)--C5orf64 BS_MWWZBQ60 -0.539929695127978 -0.539929695127978 NA NA no change no change NA NA 5:61761022 5:61703866 ARRIBA other 1 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C5orf64(9259)/AC026434.2(70925)--C5orf64 BS_Z6BWR941 1.20841029229829 1.20841029229829 NA NA no change no change NA NA 5:61761022 5:61703866 ARRIBA other 2 0 high [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA -C6orf106--AC025884.1 BS_JR5ATB7G -1.25697918284544 NA NA NA no change NA NA NA 6:34696446 15:22278818 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr6--chr15]],translocation C6orf106 NA AC025884.1 NA NA NA NA NA NA -C6orf106--AC025884.1 BS_JR5ATB7G -1.25697918284544 NA NA NA no change NA NA NA 6:34696446 15:22282799 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr6--chr15]],translocation C6orf106 NA AC025884.1 NA NA NA NA NA NA -C6orf106--AC025884.2(19970)/AC025884.1(153) BS_JR5ATB7G -1.25697918284544 NA NA NA no change NA NA NA 6:34696446 15:22278818 ARRIBA frameshift 6 1 high [],translocation C6orf106 NA AC025884.2 AC025884.1 NA NA NA NA NA -C6orf106--AL358942.1(114055)/AL360085.1(94004) BS_3F4FQJMR -0.862346178832611 NA NA NA no change NA NA NA 6:34696446 6:112731935 ARRIBA frameshift 4 1 high [],duplication C6orf106 NA AL358942.1 AL360085.1 NA NA NA NA NA -C6orf106--AL358942.1(114055)/AL360085.1(94004) BS_HC44ZA0V -0.523380368856086 NA NA NA no change NA NA NA 6:34696446 6:112731935 ARRIBA frameshift 4 0 high [],duplication C6orf106 NA AL358942.1 AL360085.1 NA NA NA NA NA -C6orf106--AL358942.1(151704)/AL360085.1(56355) BS_HC44ZA0V -0.523380368856086 NA NA NA no change NA NA NA 6:34696446 6:112769584 ARRIBA frameshift 8 1 high [],duplication C6orf106 NA AL358942.1 AL360085.1 NA NA NA NA NA -C6orf58--QKI BS_W4HGV6E7 12.5106587201147 2.1446437561174 NA NA differentially expressed differentially expressed NA NA 6:127581282 6:163455279 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr6:35.82Mb]],deletion C6orf58 NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA -C6orf89--LINC01162(180856)/RN7SL542P(11533) BS_6JHXXVR7 6.24039087608755 -0.0294627825494395 NA -0.0416847786721587 differentially expressed no change NA no change 6:36927603 7:21204004 ARRIBA other 5 0 medium [],translocation C6orf89 NA LINC01162 RN7SL542P NA NA NA NA NA -C6orf89--MEG8 BS_2A162JH9 -0.114842287438176 3.36003705509358 NA NA no change differentially expressed NA NA 6:36902434 14:100987150 ARRIBA frameshift 36 3 high [INTERCHROMOSOMAL[chr6--chr14]],translocation/5'-5' C6orf89 NA MEG8 NA NA NA NA NA NA -C6orf89--MEG8 BS_BWBDH9GM -0.0989735165425639 3.51932174819767 NA NA no change differentially expressed NA NA 6:36902434 14:100987150 ARRIBA frameshift 35 2 high [INTERCHROMOSOMAL[chr6--chr14]],translocation/5'-5' C6orf89 NA MEG8 NA NA NA NA NA NA -C7orf25--LINC-PINT BS_6WP1FHTE 4.47755478961887 -1.04571558793558 NA NA differentially expressed no change NA NA 7:42911915 7:130984109 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:88.03Mb]],duplication C7orf25 NA LINC-PINT NA NA TumorSuppressorGene NA NA NA -C7orf55-LUC7L2--PPP1R2P6 BS_7C40TRCY -1.52259340177491 26.1582134995875 NA NA no change differentially expressed NA NA 7:139341522 7:140292701 ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr7:0.87Mb]],deletion C7orf55-LUC7L2 NA PPP1R2P6 NA NA NA NA NA NA -C8orf34--C8orf34 BS_9DFBHHB5 1.51125564666301 1.51125564666301 NA NA no change no change NA NA 8:68468820 8:68439499 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.49Mb]],duplication/non-canonical_splicing C8orf34 NA C8orf34 NA NA NA NA NA NA -C8orf34--C8orf34 BS_PZVHMSYN 3.85433957542442 3.85433957542442 NA NA differentially expressed differentially expressed NA NA 8:68583044 8:68439499 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.49Mb]],duplication C8orf34 NA C8orf34 NA NA NA NA NA NA -C8orf34--C8orf34 BS_X16PENSA 2.49416479439582 2.49416479439582 NA NA differentially expressed differentially expressed NA NA 8:68721437 8:68439499 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.49Mb]],duplication/non-canonical_splicing C8orf34 NA C8orf34 NA NA NA NA NA NA -C8orf34--C8orf34 BS_X67GTEM6 5.35757577715431 5.35757577715431 NA NA differentially expressed differentially expressed NA NA 8:68787536 8:68708994 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.49Mb]],duplication/non-canonical_splicing C8orf34 NA C8orf34 NA NA NA NA NA NA -C8orf34--C8orf34 BS_ZR96A4FH 1.13158379500689 1.13158379500689 NA NA no change no change NA NA 8:68787536 8:68708994 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.49Mb]],duplication/non-canonical_splicing C8orf34 NA C8orf34 NA NA NA NA NA NA -C9orf135--APBA1 BS_A0DYVX9J 3.70586894264502 -2.04151159402173 NA NA differentially expressed differentially expressed NA NA 9:69857977 9:69517279 ARRIBA frameshift 15 1 high [INTRACHROMOSOMAL[chr9:0.15Mb]],inversion C9orf135 NA APBA1 NA NA NA NA NA NA -C9orf135--KDM4C BS_A0DYVX9J 3.70586894264502 1.69501395012742 NA NA differentially expressed no change NA NA 9:69859631 9:7046862 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr9:62.65Mb]],duplication C9orf135 NA KDM4C NA NA Oncogene NA NA NA -C9orf135--TMEM268 BS_A0DYVX9J 3.70586894264502 NA NA NA differentially expressed NA NA NA 9:69857977 9:114612282 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:44.70Mb]],inversion/3'-3' C9orf135 NA TMEM268 NA NA NA NA NA NA -C9orf24--UBAP1 BS_SAA624A4 4.98728985386571 -3.79100795916504 NA NA differentially expressed differentially expressed NA NA 9:34381290 9:34220908 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr9:0.13Mb]],duplication/3'-3' C9orf24 NA UBAP1 NA NA NA NA NA NA -C9orf3--TNRC18 BS_MA1A3GY0 2.67852338344468 1.65535004756004 NA NA differentially expressed no change NA NA 9:95086286 7:5315004 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr9--chr7]],translocation C9orf3 NA TNRC18 NA NA NA NA NA NA -CABIN1--AP000350.4 BS_WH8G4VFB 1.23060719422623 NA NA NA no change NA NA NA 22:24090747 22:23890566 ARRIBA other 14 1 medium [INTRACHROMOSOMAL[chr22:0.12Mb]],duplication CABIN1 NA AP000350.4 NA NA NA NA NA NA -CABIN1--AP000350.4 BS_WH8G4VFB 1.23060719422623 NA NA NA no change NA NA NA 22:24087713 22:23894772 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr22:0.12Mb]],duplication CABIN1 NA AP000350.4 NA NA NA NA NA NA -CABIN1--GNAQ BS_31TF0P1N -1.58893134283964 -2.08307294892172 NA NA no change differentially expressed NA NA 22:24011367 9:77922345 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr22--chr9]],translocation CABIN1 NA GNAQ NA NA CosmicCensus, Oncogene NA NA NA -CABIN1--GNAQ BS_31TF0P1N -1.58893134283964 -2.08307294892172 NA NA no change differentially expressed NA NA 22:24011728 9:77922345 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr22--chr9]],translocation CABIN1 NA GNAQ NA NA CosmicCensus, Oncogene NA NA NA -CABIN1--LINC01399 BS_70FFPA51 -0.405452246371716 50.7822852528155 NA NA no change differentially expressed NA NA 22:24108622 22:35153197 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr22:10.94Mb]],deletion/5'-5' CABIN1 NA LINC01399 NA NA NA NA NA NA -CABIN1--MIF BS_WH8G4VFB 1.23060719422623 1.67499953309725 NA NA no change no change NA NA 22:24087713 22:23894772 ARRIBA in-frame 5 1 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr22:0.12Mb]],duplication CABIN1 NA MIF NA NA Oncogene NA NA NA -CABLES1--LAMA3 BS_1EBQ3T20 -1.25042719351519 -0.973003126730369 NA NA no change no change NA NA 18:23144845 18:23834015 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr18:0.43Mb]],inversion/3'-3' CABLES1 NA LAMA3 NA TumorSuppressorGene NA NA NA NA -CABLES1--LAMA3 BS_8ZD6J47V -0.840972923164651 -0.973003126730369 NA NA no change no change NA NA 18:23144845 18:23834015 ARRIBA frameshift 10 0 medium [INTRACHROMOSOMAL[chr18:0.43Mb]],inversion/3'-3' CABLES1 NA LAMA3 NA TumorSuppressorGene NA NA NA NA -CABLES1--LAMA3 BS_M8EA6R2A -1.0960377134666 -1.00103571124037 NA NA no change no change NA NA 18:23144845 18:23834015 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr18:0.43Mb]],inversion/3'-3' CABLES1 NA LAMA3 NA TumorSuppressorGene NA NA NA NA -CABP1(13171)/MLEC(6374)--CABP1 BS_N6NE6B3W -0.580906794022662 -0.580906794022662 -0.443878823436976 NA no change no change no change NA 12:120680495 12:120659878 ARRIBA other 5 0 high [],duplication CABP1 MLEC CABP1 NA NA NA NA NA NA -CACHD1--AL020998.1 BS_RCCN63K6 0.185945577133087 NA NA NA no change NA NA NA 1:64641969 1:20294354 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr1:44.15Mb]],inversion CACHD1 NA AL020998.1 NA NA NA NA NA NA -CACHD1--FECH BS_M0QYNVK8 2.19400889541533 1.95413742237693 NA NA differentially expressed no change NA NA 1:64658873 18:57580199 ARRIBA in-frame 5 0 high [INTERCHROMOSOMAL[chr1--chr18]],translocation CACHD1 NA FECH NA NA NA NA NA NA -CACNA1A--CACNA1A BS_2SFTWNVE 0.803815927787452 0.803815927787452 NA NA no change no change NA NA 19:13307782 19:13308528 ARRIBA in-frame 25 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_470DYRJQ 0.613029830875783 0.613029830875783 NA NA no change no change NA NA 19:13307782 19:13308528 ARRIBA in-frame 40 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_5PEFNDCY 0.618103654434538 0.618103654434538 NA NA no change no change NA NA 19:13307782 19:13308528 ARRIBA in-frame 44 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_5YJEPPTP -0.444369456303858 -0.444369456303858 NA NA no change no change NA NA 19:13307782 19:13308528 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_7FWZ518S 0.679842194548848 0.679842194548848 NA NA no change no change NA NA 19:13307782 19:13308528 ARRIBA in-frame 14 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_90B22NGP 2.36402457119217 2.36402457119217 NA NA differentially expressed differentially expressed NA NA 19:13307782 19:13308528 ARRIBA in-frame 38 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_9DZ253JY -0.0566699437275977 -0.0566699437275977 NA NA no change no change NA NA 19:13307782 19:13308528 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_B8T7M0WV 1.07965369084368 1.07965369084368 NA NA no change no change NA NA 19:13307782 19:13308528 ARRIBA in-frame 25 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_C51RB0YR -0.575533478280443 -0.575533478280443 NA NA no change no change NA NA 19:13307782 19:13308528 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_ET8CJXSF 0.398865429070162 0.398865429070162 NA NA no change no change NA NA 19:13307782 19:13308528 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_FEPRNEXX 1.33163794143883 1.33163794143883 NA NA no change no change NA NA 19:13307782 19:13308528 ARRIBA in-frame 46 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_J71N7D09 2.17683480249543 2.17683480249543 NA NA differentially expressed differentially expressed NA NA 19:13307782 19:13308528 ARRIBA in-frame 37 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_JTMXAMB7 0.958755481279021 0.958755481279021 NA NA no change no change NA NA 19:13307782 19:13308528 ARRIBA in-frame 20 2 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_N6NE6B3W 1.16163333014949 1.16163333014949 NA NA no change no change NA NA 19:13307782 19:13308528 ARRIBA in-frame 77 0 high [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_SDA4RMMG 0.293484912221477 0.293484912221477 NA NA no change no change NA NA 19:13307782 19:13308528 ARRIBA in-frame 15 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_SFKZSJN1 0.631392888697713 0.631392888697713 NA NA no change no change NA NA 19:13307782 19:13308528 ARRIBA in-frame 17 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_Z7PKVY9J -0.344396398508343 -0.344396398508343 NA NA no change no change NA NA 19:13307782 19:13308528 ARRIBA in-frame 7 3 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1A--CACNA1A BS_ZRM0W01M 0.916849471005361 0.916849471005361 NA NA no change no change NA NA 19:13307782 19:13308528 ARRIBA in-frame 45 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA -CACNA1B--CACNA1B BS_13CGKADW -0.451720904724583 -0.451720904724583 NA NA no change no change NA NA 9:137917431 9:137913180 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.25Mb]],duplication/non-canonical_splicing CACNA1B NA CACNA1B NA NA NA NA NA NA -CACNA1B--CACNA1B BS_49BQS7Z6 -0.468214255074987 -0.468214255074987 NA NA no change no change NA NA 9:137957687 9:137952274 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.25Mb]],duplication/non-canonical_splicing CACNA1B NA CACNA1B NA NA NA NA NA NA -CACNA1B--CACNA1B BS_78QX3XDF -1.23476475779312 -1.23476475779312 NA NA no change no change NA NA 9:137917431 9:137913180 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.25Mb]],duplication/non-canonical_splicing CACNA1B NA CACNA1B NA NA NA NA NA NA -CACNA1B--CACNA1B BS_7ZV3DPGT -0.0822831822259946 -0.0822831822259946 NA NA no change no change NA NA 9:137917431 9:137913180 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.25Mb]],duplication/non-canonical_splicing CACNA1B NA CACNA1B NA NA NA NA NA NA -CACNA1B--CACNA1B BS_81SP2HX4 0.343859254755026 0.343859254755026 NA NA no change no change NA NA 9:137917431 9:137913180 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.25Mb]],duplication/non-canonical_splicing CACNA1B NA CACNA1B NA NA NA NA NA NA -CACNA1B--CACNA1B BS_M7QJ8VF0 0.729839610331591 0.729839610331591 NA NA no change no change NA NA 9:137917431 9:137913180 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.25Mb]],duplication/non-canonical_splicing CACNA1B NA CACNA1B NA NA NA NA NA NA -CACNA1B--CACNA1B BS_N6NE6B3W 1.03902857440768 1.03902857440768 NA NA no change no change NA NA 9:137917431 9:137913180 ARRIBA frameshift 19 3 low [SELFIE,INTRACHROMOSOMAL[chr9:0.25Mb]],duplication/non-canonical_splicing CACNA1B NA CACNA1B NA NA NA NA NA NA -CACNA1C--AC005865.2 BS_W644VEVE -1.49491098309613 NA NA NA no change NA NA NA 12:2457706 12:3317319 ARRIBA frameshift 14 0 high [INTRACHROMOSOMAL[chr12:0.60Mb]],inversion CACNA1C NA AC005865.2 NA NA NA NA NA NA -CACNA1C--AC005865.2 BS_W644VEVE -1.49491098309613 NA NA NA no change NA NA NA 12:2457706 12:3323512 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr12:0.60Mb]],inversion CACNA1C NA AC005865.2 NA NA NA NA NA NA -CACNA1C--AC005865.2 BS_W644VEVE -1.49491098309613 NA NA NA no change NA NA NA 12:2457706 12:3307476 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.60Mb]],inversion CACNA1C NA AC005865.2 NA NA NA NA NA NA -CACNA1C--AC005865.2 BS_W644VEVE -1.49491098309613 NA NA NA no change NA NA NA 12:2457706 12:3307818 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.60Mb]],inversion CACNA1C NA AC005865.2 NA NA NA NA NA NA -CACNA1C--SMKR1(61550)/AC078846.1(30066) BS_8NY9J9NQ 2.76081909777863 -2.00280327556332 NA NA differentially expressed differentially expressed NA NA 12:2688779 7:129574482 ARRIBA frameshift 39 7 high [],translocation CACNA1C NA SMKR1 AC078846.1 NA NA NA NA NA -CACNA1C--TSPAN9 BS_81SP2HX4 -1.66232613394442 0.27627273649718 NA NA no change no change NA NA 12:2449153 12:3278421 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr12:0.38Mb]],inversion/3'-3' CACNA1C NA TSPAN9 NA NA NA NA NA NA -CACNA1C--TSPAN9 BS_W644VEVE -1.49491098309613 1.93250949774353 NA NA no change no change NA NA 12:2437460 12:3259109 ARRIBA other 19 4 medium [INTRACHROMOSOMAL[chr12:0.38Mb]],inversion/3'-3' CACNA1C NA TSPAN9 NA NA NA NA NA NA -CACNA1E--CACNA1E BS_0T17SY47 1.09052778398843 1.09052778398843 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_0X9EGHY2 1.68253695222101 1.68253695222101 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_0Y66ZBWE 0.784941552271674 0.784941552271674 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_196BBNEJ 0.254515019153518 0.254515019153518 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_1T19NFJ8 1.11958059512522 1.11958059512522 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_264RCK7G 0.689199002286566 0.689199002286566 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_273HKCT4 1.09994282195891 1.09994282195891 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 9 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_2A5R9MEJ 1.8063660543171 1.8063660543171 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_2XD3MNKD -0.318818296068398 -0.318818296068398 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_398KYV92 1.12162922771132 1.12162922771132 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_39CGACC7 0.378274313633513 0.378274313633513 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_3MS8WVNR 0.135281931023465 0.135281931023465 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_470DYRJQ 0.151420296219094 0.151420296219094 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_49852ZBH -0.557541366191235 -0.557541366191235 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_4C4MZ4NT -0.139915527007224 -0.139915527007224 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_52426AMF -0.154588006463119 -0.154588006463119 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_5965SFPZ 1.22550423156069 1.22550423156069 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_5PEFNDCY -0.272354300867758 -0.272354300867758 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_6MZ7FRZH -0.21203256095299 -0.21203256095299 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_6WP1FHTE 1.1979639902823 1.1979639902823 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_7FWZ518S -0.193594512148284 -0.193594512148284 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_7XRN3CFX 0.662527897919586 0.662527897919586 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_7Z93ZYMS 0.0411815923496423 0.0411815923496423 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_7ZV3DPGT 0.552800988530212 0.552800988530212 NA NA no change no change NA NA 1:181511510 1:181483744 ARRIBA in-frame 5 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_8RCR7Y4B 0.256615448055861 0.256615448055861 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_90B22NGP 2.44433034348243 2.44433034348243 NA NA differentially expressed differentially expressed NA NA 1:181580776 1:181577766 ARRIBA frameshift 28 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_A1VEGWTR 0.415629110548188 0.415629110548188 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_AKRHBPNZ 1.32632085407676 1.32632085407676 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_AMZ70B6F 1.40810459233471 1.40810459233471 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_ARFQ1WG3 0.903437442402339 0.903437442402339 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_B741RZY9 0.932523660417782 0.932523660417782 NA NA no change no change NA NA 1:181511510 1:181483744 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_B8T7M0WV 0.11420974930253 0.11420974930253 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_BKR4E30C -0.292048401717331 -0.292048401717331 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_BPSTSCBJ 0.295843109284868 0.295843109284868 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_C6ZZ3FY5 0.0461903133717337 0.0461903133717337 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_CZ82ANWP -0.0446187569444802 -0.0446187569444802 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_D2K9C7XR 1.45401458296587 1.45401458296587 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_DY9NTFQR 1.46483900713966 1.46483900713966 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_E4QK839R -0.122541249798738 -0.122541249798738 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_EHVYJAVA -0.221358509497912 -0.221358509497912 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_ERWT0ZWE 1.41934756687354 1.41934756687354 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_ET8CJXSF -0.466210323948022 -0.466210323948022 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_FBJ5Q54N 2.61761890155525 2.61761890155525 NA NA differentially expressed differentially expressed NA NA 1:181580776 1:181577766 ARRIBA frameshift 34 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_FEPRNEXX 0.891107798728385 0.891107798728385 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_FWMJPKCV 0.309979348115291 0.309979348115291 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_G9XE3N9T 0.8443583138895 0.8443583138895 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_GYA4V1RD -0.292048401717331 -0.292048401717331 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_HA20Y4XY -0.643009520142823 -0.643009520142823 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_HCP5C912 1.99387580208011 1.99387580208011 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 18 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_J8G4SH4Z 0.647451409874755 0.647451409874755 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_JXNZYGCR 0.733792113028077 0.733792113028077 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_K5802F84 0.862261339164512 0.862261339164512 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_K7MVS0Z7 0.664025220263136 0.664025220263136 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_KM2EX0K6 0.410099204875108 0.410099204875108 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_KPT2WPHW 1.9452804797152 1.9452804797152 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_M1T1K5WV 1.06290797840177 1.06290797840177 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_M8WP5T16 -0.603796795466967 -0.603796795466967 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_MB7WN0ZB 0.267063004181792 0.267063004181792 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_N1E0H8YQ -0.768942596135952 -0.768942596135952 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_N6NE6B3W 1.00794426238806 1.00794426238806 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 25 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_PK18H7E7 0.273288318658826 0.273288318658826 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_PQ7CQFYR 1.52635725895205 1.52635725895205 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_PZVHMSYN -0.142835760365366 -0.142835760365366 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_QB7YGKN1 0.0660194964384701 0.0660194964384701 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_QEYPFYHD 2.37658140128153 2.37658140128153 NA NA differentially expressed differentially expressed NA NA 1:181580776 1:181577766 ARRIBA frameshift 32 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_QPPPGYP4 0.337763676021966 0.337763676021966 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_QV51J756 2.16214614673849 2.16214614673849 NA NA differentially expressed differentially expressed NA NA 1:181580776 1:181577766 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_QWNBZ9RJ 1.35364099139168 1.35364099139168 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_R13X6TMW -0.0473166207156076 -0.0473166207156076 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_R7HZCZ8B 0.776793185212924 0.776793185212924 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_RCC8BXVE 2.19659589056867 2.19659589056867 NA NA differentially expressed differentially expressed NA NA 1:181580776 1:181577766 ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_RXN5T5YT 0.627565569429585 0.627565569429585 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_S69QZAJR 1.81790441524049 1.81790441524049 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_SDA4RMMG -0.516978757069183 -0.516978757069183 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_SFKZSJN1 0.462520491146638 0.462520491146638 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_T55Y4Z0Y 0.547867484008386 0.547867484008386 NA NA no change no change NA NA 1:181511510 1:181483744 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_TA9WP4TH 0.411945328869075 0.411945328869075 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_TDEFAPNH 0.483561998553002 0.483561998553002 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_TG93XC55 2.36241593391471 2.36241593391471 NA NA differentially expressed differentially expressed NA NA 1:181580776 1:181577766 ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_TM9MH0RP 0.0758130111172437 0.0758130111172437 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_TRKH2SPE 0.764466345372714 0.764466345372714 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_V3Z3DB4N 0.692126332209056 0.692126332209056 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 9 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_V96WVE3Z 1.77702715472106 1.77702715472106 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_VJVDJABP 3.3797745215016 3.3797745215016 NA NA differentially expressed differentially expressed NA NA 1:181511510 1:181483744 ARRIBA in-frame 24 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_VNE0ZPBS 1.62597895110158 1.62597895110158 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_VTJ9ESSV 0.810386987258648 0.810386987258648 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_W18SF91A -0.803860857545768 -0.803860857545768 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_W60RQAKK 0.408250247228466 0.408250247228466 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_W9N9844Q -0.451010176897078 -0.451010176897078 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_WH5HDE0A 1.99387580208011 1.99387580208011 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_WH8G4VFB 0.699413684562944 0.699413684562944 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_X67GTEM6 1.14694742894727 1.14694742894727 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_XJTW0P8P 2.25550806346352 2.25550806346352 NA NA differentially expressed differentially expressed NA NA 1:181580776 1:181577766 ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_YVMEEBKC -0.656369313315119 -0.656369313315119 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_ZR96A4FH 2.08002339002395 2.08002339002395 NA NA differentially expressed differentially expressed NA NA 1:181580776 1:181577766 ARRIBA frameshift 18 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_ZRM0W01M 0.519522748708357 0.519522748708357 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_ZVWE73JZ 0.275356294566354 0.275356294566354 NA NA no change no change NA NA 1:181580776 1:181577766 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1E--CACNA1E BS_ZXYDSBM9 2.19701509908875 2.19701509908875 NA NA differentially expressed differentially expressed NA NA 1:181580776 1:181577766 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA -CACNA1I--MKL1 BS_1D6PZNKN -1.02234535968842 2.44755578991604 NA NA no change differentially expressed NA NA 22:39634724 22:40594735 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr22:0.72Mb]],inversion CACNA1I NA MKL1 NA NA Oncogene NA NA NA -CACNA2D1--LINC01446 BS_4QW2S1Q8 2.37560100612546 46.6236033932362 NA NA differentially expressed differentially expressed NA NA 7:82335135 7:53779659 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:28.13Mb]],inversion/5'-5' CACNA2D1 NA LINC01446 NA NA NA NA NA NA -CACNA2D1--MTHFD2P5(10131)/AC004006.1(56213) BS_QEYPFYHD 6.90201424521298 27.5870107416567 NA NA differentially expressed differentially expressed NA NA 7:81961894 7:82600822 ARRIBA frameshift 5 0 medium [],duplication CACNA2D1 NA MTHFD2P5 AC004006.1 NA NA NA NA NA -CACNA2D1--RAC1P9 BS_4QW2S1Q8 2.37560100612546 70.5042452397193 NA NA differentially expressed differentially expressed NA NA 7:82335135 7:53779659 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr7:28.17Mb]],inversion CACNA2D1 NA RAC1P9 NA NA NA NA NA NA -CACNA2D1--RN7SKP226(165208)/LINC00824(19258) BS_TZVFR600 7.63244870226552 11.4578890084109 NA 5.23102845653062 differentially expressed differentially expressed NA differentially expressed 7:82060428 8:128386011 ARRIBA frameshift 7 0 medium [],translocation CACNA2D1 NA RN7SKP226 LINC00824 NA NA NA NA NA -CACNA2D3--AC129807.1 BS_FAQQ0GCQ -1.20886410009921 NA NA NA no change NA NA NA 3:54764351 3:81920810 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr3:26.77Mb]],inversion/3'-3' CACNA2D3 NA AC129807.1 NA TumorSuppressorGene NA NA NA NA -CACNA2D3--AC132008.2 BS_FAQQ0GCQ -1.20886410009921 NA NA NA no change NA NA NA 3:54764351 3:197593159 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr3:142.50Mb]],inversion CACNA2D3 NA AC132008.2 NA TumorSuppressorGene NA NA NA NA -CACNA2D3--ATXN7 BS_FAQQ0GCQ -1.20886410009921 2.63304162520009 NA NA no change differentially expressed NA NA 3:54642241 3:63898399 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:8.79Mb]],deletion CACNA2D3 NA ATXN7 NA TumorSuppressorGene NA NA NA NA -CACNA2D3--ATXN7 BS_FAQQ0GCQ -1.20886410009921 2.63304162520009 NA NA no change differentially expressed NA NA 3:54764351 3:63898399 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:8.79Mb]],deletion CACNA2D3 NA ATXN7 NA TumorSuppressorGene NA NA NA NA -CACNA2D3--LINC02008 BS_FAQQ0GCQ -1.20886410009921 NA NA NA no change NA NA NA 3:54764351 3:82022788 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr3:26.91Mb]],inversion/3'-3' CACNA2D3 NA LINC02008 NA TumorSuppressorGene NA NA NA NA -CACNB4--CACNB4 BS_9PB3XH5D 0.43739497858263 0.43739497858263 NA NA no change no change NA NA 2:151841903 2:151855375 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication/non-canonical_splicing CACNB4 NA CACNB4 NA NA NA NA NA NA -CACNB4--CACNB4 BS_V96WVE3Z 0.108531585330148 0.108531585330148 NA NA no change no change NA NA 2:151841903 2:151855375 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication/non-canonical_splicing CACNB4 NA CACNB4 NA NA NA NA NA NA -CADM1--AP003063.1(136161)/AP003100.1(29414) BS_7G42J2SK 1.06156700305898 NA NA NA no change NA NA NA 11:115504271 11:112757890 ARRIBA frameshift 5 2 high [],deletion CADM1 NA AP003063.1 AP003100.1 TumorSuppressorGene NA NA NA NA -CADM1--CASP5 BS_KBT7MQ6H 0.764847148931186 8.98562414775416 NA NA no change differentially expressed NA NA 11:115504271 11:104999028 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:10.15Mb]],deletion CADM1 NA CASP5 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -CADM1--SLC17A6 BS_7G42J2SK 1.06156700305898 0.371855670999435 NA NA no change no change NA NA 11:115504271 11:22359413 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr11:92.79Mb]],inversion CADM1 NA SLC17A6 NA TumorSuppressorGene NA NA NA NA -CADM2--CADM2 BS_M0QYNVK8 4.90279370595685 4.90279370595685 NA NA differentially expressed differentially expressed NA NA 3:84959668 3:85383346 ARRIBA frameshift 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr3:1.12Mb]],inversion/3'-3' CADM2 NA CADM2 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -CADPS--CADPS BS_JXNZYGCR -0.939325352867867 -0.939325352867867 NA NA no change no change NA NA 3:62445765 3:62481869 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.48Mb]],duplication/non-canonical_splicing CADPS NA CADPS NA NA NA NA NA NA -CAMK2D--AC093840.1(216486)/TEMN3-AS1(80532) BS_C6ZZ3FY5 0.163834449254723 NA NA NA no change NA NA NA 4:113509638 4:181739487 ARRIBA frameshift 1 1 medium [],inversion CAMK2D NA AC093840.1 TEMN3-AS1 Kinase, Oncogene, Kinase NA NA NA NA -CAMK2D--AC097522.1(17413)/RNU6-1252P(35901) BS_QB84TBA3 2.95800331856013 NA NA NA differentially expressed NA NA NA 4:113759320 4:52458948 ARRIBA frameshift 5 0 medium [],inversion CAMK2D NA AC097522.1 RNU6-1252P Kinase, Oncogene, Kinase NA NA NA NA -CAMK2D--ANK2 BS_WRQHPSXQ 2.84357983371512 1.12928443333391 NA NA differentially expressed no change NA NA 4:113759320 4:113381457 ARRIBA frameshift 1 0 low [ChimerSeq,INTRACHROMOSOMAL[chr4:0.07Mb],LOCAL_INVERSION:-:+:[67292]],inversion CAMK2D NA ANK2 NA Kinase, Oncogene, Kinase NA NA NA TCGAFusion -CAMKV--SPSB4 BS_FAQQ0GCQ -1.88533766982547 4.2989043789915 NA NA no change differentially expressed NA NA 3:49869758 3:141147142 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr3:91.18Mb]],inversion CAMKV NA SPSB4 NA Kinase NA NA NA NA -CAMSAP1--EXD3 BS_V3Z3DB4N 2.74974088923621 -0.208282837054093 NA NA differentially expressed no change NA NA 9:135850137 9:137354377 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr9:1.40Mb]],duplication CAMSAP1 NA EXD3 NA NA NA NA NA NA -CAMSAP1--EXD3 BS_V3Z3DB4N 2.74974088923621 -0.208282837054093 NA NA differentially expressed no change NA NA 9:135850137 9:137354773 ARRIBA in-frame 5 1 high [INTRACHROMOSOMAL[chr9:1.40Mb]],duplication CAMSAP1 NA EXD3 NA NA NA NA NA NA -CAMSAP1--FBXW2 BS_0XEG6SNV 1.85468136015086 2.40548630330527 NA NA no change differentially expressed NA NA 9:135818408 9:120778545 ARRIBA in-frame 8 0 high [INTRACHROMOSOMAL[chr9:15.02Mb]],deletion CAMSAP1 NA FBXW2 NA NA NA NA NA NA -CAMSAP2--AL353784.1 BS_DFGS950G 3.33538987691258 NA NA NA differentially expressed NA NA NA 1:200761098 10:54568565 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr1--chr10]],translocation CAMSAP2 NA AL353784.1 NA NA NA NA NA NA -CAMSAP2--CAMSAP2 BS_DFGS950G 3.33538987691258 3.33538987691258 NA NA differentially expressed differentially expressed NA NA 1:200767915 1:200799519 ARRIBA frameshift 2 1 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.12Mb]],inversion/3'-3' CAMSAP2 NA CAMSAP2 NA NA NA NA NA NA -CAMSAP2--GS1-279B7.1(20852)/RNU7-183P(78353) BS_QWTE1CWR -0.498762488749531 -0.129775830329164 NA NA no change no change NA NA 1:200815644 1:185355891 ARRIBA frameshift 3 0 high [],inversion CAMSAP2 NA GS1-279B7.1 RNU7-183P NA NA NA NA NA -CAMSAP2--GS1-279B7.1(54707)/RNU7-183P(44498) BS_QWTE1CWR -0.498762488749531 -0.129775830329164 NA NA no change no change NA NA 1:200815644 1:185389746 ARRIBA frameshift 12 2 high [],inversion CAMSAP2 NA GS1-279B7.1 RNU7-183P NA NA NA NA NA -CAMSAP2--GS1-279B7.1(54707)/RNU7-183P(44498) BS_WKESC3XN 1.96379830423875 0.432180877710404 NA NA no change no change NA NA 1:200815644 1:185389746 ARRIBA frameshift 9 1 high [],inversion CAMSAP2 NA GS1-279B7.1 RNU7-183P NA NA NA NA NA -CAMTA1--SH3PXD2B BS_KZPR01BD 0.717824830406318 1.64307823365396 NA NA no change no change NA NA 1:6825210 5:172373815 ARRIBA frameshift 6 1 high [INTERCHROMOSOMAL[chr1--chr5]],translocation CAMTA1 NA SH3PXD2B NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -CAMTA1--SH3PXD2B BS_KZPR01BD 0.717824830406318 1.64307823365396 NA NA no change no change NA NA 1:6825210 5:172358877 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr1--chr5]],translocation CAMTA1 NA SH3PXD2B NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -CAMTA1--SMAP2 BS_TRKH2SPE 1.25330819473422 -0.340567494380737 NA NA no change no change NA NA 1:6825210 1:40407482 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:32.58Mb]],inversion/3'-3' CAMTA1 NA SMAP2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -CAPN10-AS1--CDC16 BS_NJ4WPQVK -0.870372961491381 -2.39810387105657 NA NA no change differentially expressed NA NA 2:240586260 13:114251336 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr2--chr13]],translocation/5'-5' CAPN10-AS1 NA CDC16 NA NA NA NA NA NA -CAPN7--AC005865.2 BS_81SP2HX4 0.472351448709239 NA NA NA no change NA NA NA 3:15223561 12:3332392 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr3--chr12]],translocation CAPN7 NA AC005865.2 NA NA NA NA NA NA -CAPS2--CAPS2 BS_7G42J2SK 1.73915974618181 1.73915974618181 NA NA no change no change NA NA 12:75282251 12:75316434 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.11Mb]],duplication/non-canonical_splicing CAPS2 NA CAPS2 NA NA NA NA NA NA -CAPS2--CAPS2 BS_CZ3NA7KV 1.19395940166996 1.19395940166996 NA NA no change no change NA NA 12:75282251 12:75323222 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.11Mb]],duplication/non-canonical_splicing CAPS2 NA CAPS2 NA NA NA NA NA NA -CAPS2--CAPS2 BS_EK5PCKY0 2.21933178123026 2.21933178123026 NA NA differentially expressed differentially expressed NA NA 12:75282251 12:75316434 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.11Mb]],duplication/non-canonical_splicing CAPS2 NA CAPS2 NA NA NA NA NA NA -CAPS2--CAPS2 BS_NGHK9RZP 1.87798632170627 1.87798632170627 NA NA no change no change NA NA 12:75282251 12:75316434 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.11Mb]],duplication/non-canonical_splicing CAPS2 NA CAPS2 NA NA NA NA NA NA -CAPZA2--BRAF BS_HX0S30NE 2.48669469141898 2.35413687712063 NA NA differentially expressed differentially expressed NA NA 7:116862650 7:140800481 ARRIBA frameshift 22 0 medium [INTRACHROMOSOMAL[chr7:23.80Mb]],inversion CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -CAPZA2--BRAF BS_HX0S30NE 2.48669469141898 2.35413687712063 NA NA differentially expressed differentially expressed NA NA 7:116862650 7:140794467 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr7:23.80Mb]],inversion CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -CAPZA2--BRAF BS_HX0S30NE 2.48669469141898 2.35413687712063 NA NA differentially expressed differentially expressed NA NA 7:116862650 7:140787584 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:23.80Mb]],inversion CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -CAPZA2--BRAF BS_YB2RXRHT 1.64304374863556 2.32818000980563 NA NA no change differentially expressed NA NA 7:116862650 7:140794467 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr7:23.80Mb]],inversion CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -CAPZA2--BRAF BS_YB2RXRHT 1.64304374863556 2.32818000980563 NA NA no change differentially expressed NA NA 7:116862650 7:140800481 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:23.80Mb]],inversion CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -CAPZA2--UBAP2 BS_4QW2S1Q8 1.65958768820623 1.37406627990912 NA NA no change no change NA NA 7:116906342 9:33927992 ARRIBA frameshift 8 0 high [INTERCHROMOSOMAL[chr7--chr9]],translocation CAPZA2 NA UBAP2 NA NA NA NA NA NA -CAPZA2--UBAP2 BS_4QW2S1Q8 1.65958768820623 1.37406627990912 NA NA no change no change NA NA 7:116904383 9:33927992 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr7--chr9]],translocation CAPZA2 NA UBAP2 NA NA NA NA NA NA -CARD10--LGALS2 BS_PGK832G2 7.2976250437785 19.8834510697852 NA NA differentially expressed differentially expressed NA NA 22:37519343 22:37580281 ARRIBA other 29 0 high [INTRACHROMOSOMAL[chr22:0.05Mb],LOCAL_REARRANGEMENT:-:[50704]],duplication CARD10 NA LGALS2 NA NA NA NA NA TCGAFusion -CARD10--LGALS2 BS_PGK832G2 7.2976250437785 19.8834510697852 NA NA differentially expressed differentially expressed NA NA 22:37519343 22:37579985 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:0.05Mb],LOCAL_REARRANGEMENT:-:[50704]],duplication CARD10 NA LGALS2 NA NA NA NA NA TCGAFusion -CARD10--LGALS2 BS_PGK832G2 7.2976250437785 19.8834510697852 NA NA differentially expressed differentially expressed NA NA 22:37519343 22:37571931 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr22:0.05Mb],LOCAL_REARRANGEMENT:-:[50704]],duplication CARD10 NA LGALS2 NA NA NA NA NA TCGAFusion -CARD14--CYTH1 BS_C41DJZ1F -1.19800055440075 0.515708282143307 NA NA no change no change NA NA 17:80209071 17:78688706 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr17:1.39Mb]],inversion CARD14 NA CYTH1 NA NA NA NA NA NA -CARM1P1--CARM1P1 BS_N6NE6B3W 7.05694600607843 7.05694600607843 NA NA differentially expressed differentially expressed NA NA 9:2984382 9:3053412 ARRIBA other 12 0 medium [SELFIE,INTRACHROMOSOMAL[chr9:0.15Mb]],duplication CARM1P1 NA CARM1P1 NA NA NA NA NA NA -CARM1P1--CARM1P1 BS_SFKZSJN1 5.74158243195276 5.74158243195276 NA NA differentially expressed differentially expressed NA NA 9:2984382 9:3053412 ARRIBA other 14 0 medium [SELFIE,INTRACHROMOSOMAL[chr9:0.15Mb]],duplication CARM1P1 NA CARM1P1 NA NA NA NA NA NA -CARMIL1--AL021407.2(3717)/MYLIP(16815) BS_NJ4WPQVK NA NA NA 1.06113757801476 NA NA NA no change 6:25482343 6:16112310 ARRIBA frameshift 2 0 medium [],inversion CARMIL1 NA AL021407.2 MYLIP NA NA NA NA NA -CARS--PAFAH1B2 BS_KBT7MQ6H 1.71030233125429 1.8019716615586 NA NA no change no change NA NA 11:3038050 11:117175906 ARRIBA in-frame 20 0 high [INTRACHROMOSOMAL[chr11:114.09Mb]],inversion CARS NA PAFAH1B2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CASC1--KRAS BS_7BTZQKYY 7.89327322674007 -0.327309082301163 NA NA differentially expressed no change NA NA 12:25119145 12:25245395 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_REARRANGEMENT:-:[9627]],duplication CASC1 NA KRAS NA TumorSuppressorGene CosmicCensus, Oncogene NA NA NA -CASC1--KRAS BS_7BTZQKYY 7.89327322674007 -0.327309082301163 NA NA differentially expressed no change NA NA 12:25119159 12:25245395 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_REARRANGEMENT:-:[9627]],duplication CASC1 NA KRAS NA TumorSuppressorGene CosmicCensus, Oncogene NA NA NA -CASC1--KRAS BS_7BTZQKYY 7.89327322674007 -0.327309082301163 NA NA differentially expressed no change NA NA 12:25144365 12:25245395 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_REARRANGEMENT:-:[9627]],duplication CASC1 NA KRAS NA TumorSuppressorGene CosmicCensus, Oncogene NA NA NA -CASC1--KRAS BS_7BTZQKYY 7.89327322674007 -0.327309082301163 NA NA differentially expressed no change NA NA 12:25147001 12:25245395 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_REARRANGEMENT:-:[9627]],duplication CASC1 NA KRAS NA TumorSuppressorGene CosmicCensus, Oncogene NA NA NA -CASC15--CASC15 BS_KVNGNETA 2.98133392936118 2.98133392936118 NA NA differentially expressed differentially expressed NA NA 6:22110920 6:21909470 ARRIBA other 13 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.70Mb]],duplication/non-canonical_splicing CASC15 NA CASC15 NA NA NA NA NA NA -CASC15(32315)/HDGFL1(168850)--CASC15 BS_052PZFMK 4.68523610326925 4.68523610326925 0.647967636867004 NA differentially expressed differentially expressed no change NA 6:22400643 6:22349229 ARRIBA other 5 1 high [],duplication CASC15 HDGFL1 CASC15 NA NA NA NA NA NA -CASC15(32315)/HDGFL1(168850)--CASC15 BS_1EN5V3XW 4.65355397943332 4.65355397943332 1.17899694505628 NA differentially expressed differentially expressed no change NA 6:22400643 6:22349229 ARRIBA other 7 0 high [],duplication CASC15 HDGFL1 CASC15 NA NA NA NA NA NA -CASC15(32315)/HDGFL1(168850)--CASC15 BS_9M5XJ10G 6.58617900924148 6.58617900924148 2.21164076800796 NA differentially expressed differentially expressed differentially expressed NA 6:22400643 6:22349229 ARRIBA other 6 1 medium [],duplication CASC15 HDGFL1 CASC15 NA NA NA NA NA NA -CASC15(32315)/HDGFL1(168850)--CASC15 BS_E3BAT4C1 5.64962734736827 5.64962734736827 2.46393385419079 NA differentially expressed differentially expressed differentially expressed NA 6:22400643 6:22349229 ARRIBA other 7 0 medium [],duplication CASC15 HDGFL1 CASC15 NA NA NA NA NA NA -CASC15(32315)/HDGFL1(168850)--CASC15 BS_QEYPFYHD 6.47085142679461 6.47085142679461 0.378610993093684 NA differentially expressed differentially expressed no change NA 6:22400643 6:22349229 ARRIBA other 15 0 high [],duplication CASC15 HDGFL1 CASC15 NA NA NA NA NA NA -CASC15(32315)/HDGFL1(168850)--CASC15 BS_RSRPX3S8 4.87800327698107 4.87800327698107 1.44076596462602 NA differentially expressed differentially expressed no change NA 6:22400643 6:22349229 ARRIBA other 1 0 low [],duplication CASC15 HDGFL1 CASC15 NA NA NA NA NA NA -CASC17--AC007423.1 BS_3MS8WVNR 49.6029921958557 NA NA NA differentially expressed NA NA NA 17:71185596 17:70779229 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr17:0.32Mb]],deletion CASC17 NA AC007423.1 NA NA NA NA NA NA -CASC17--AC007423.1 BS_WVW3W6ZB 260.526384247299 NA NA NA differentially expressed NA NA NA 17:71185596 17:70779229 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr17:0.32Mb]],deletion CASC17 NA AC007423.1 NA NA NA NA NA NA -CASC19--MROH1 BS_HE57E1RP 128.741148409275 -0.202776760503098 NA NA differentially expressed no change NA NA 8:127168898 8:144223108 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr8:16.92Mb]],inversion CASC19 NA MROH1 NA NA NA NA NA NA -CATSPERE--AL445218.1(31141)/LINC01761(62596) BS_VVTHDRBD NA NA NA NA NA NA NA NA 1:244457569 1:95412141 ARRIBA other 7 0 high [],duplication CATSPERE NA AL445218.1 LINC01761 NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_0T17SY47 NA -4.4266649309698 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_0T17SY47 NA -4.4266649309698 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_1EBQ3T20 NA -0.431759916414357 NA NA NA no change NA NA 9:100578551 9:100498765 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_1EBQ3T20 NA -0.431759916414357 NA NA NA no change NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_1T19NFJ8 NA -2.11315806325701 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 6 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_1T19NFJ8 NA -2.11315806325701 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_1T19NFJ8 NA -2.11315806325701 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_1T19NFJ8 NA -2.11315806325701 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_2SFTWNVE NA -3.58115738644699 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_2SFTWNVE NA -3.58115738644699 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_2SFTWNVE NA -3.58115738644699 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_2SFTWNVE NA -3.58115738644699 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_2XD3MNKD NA -3.93807309887101 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_2XD3MNKD NA -3.93807309887101 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_2XD3MNKD NA -3.93807309887101 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_2XD3MNKD NA -3.93807309887101 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_3NWQXPQV NA -3.84762148371519 NA NA NA differentially expressed NA NA 9:100585927 9:100572518 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_3NWQXPQV NA -3.84762148371519 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_4D9DD103 NA -4.75752106163389 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_4D9DD103 NA -4.75752106163389 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_4D9DD103 NA -4.75752106163389 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_4W68NV3M NA -4.48822611990416 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_4W68NV3M NA -4.48822611990416 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_4W68NV3M NA -4.48822611990416 NA NA NA differentially expressed NA NA 9:100578551 9:100547744 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_4W68NV3M NA -4.48822611990416 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_7FWZ518S NA -1.96131951599781 NA NA NA no change NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_7FWZ518S NA -1.96131951599781 NA NA NA no change NA NA 9:100578551 9:100547744 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_7FWZ518S NA -1.96131951599781 NA NA NA no change NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_8ZD6J47V NA -4.17269779927154 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_9M5XJ10G NA -3.49726762374958 NA NA NA differentially expressed NA NA 9:100585927 9:100576516 ARRIBA frameshift 2 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_9V633J1X NA -4.2535023594913 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_9V633J1X NA -4.2535023594913 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_9V633J1X NA -4.2535023594913 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_AMZ70B6F NA -4.45718685280054 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_AMZ70B6F NA -4.45718685280054 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_AMZ70B6F NA -4.45718685280054 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_BSV07M7Z NA -4.28124944967679 NA NA NA differentially expressed NA NA 9:100586185 9:100576516 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_BSV07M7Z NA -4.28124944967679 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_CQSAJ7BF NA -3.58115738644699 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_DVCQ8XDZ NA -3.32355711557478 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_EFE4YEK3 NA -3.78259904675389 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_EFE4YEK3 NA -3.78259904675389 NA NA NA differentially expressed NA NA 9:100585927 9:100572518 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_EFE4YEK3 NA -3.78259904675389 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_ERWT0ZWE NA -3.89228889123996 NA NA NA differentially expressed NA NA 9:100585927 9:100576516 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_ERWT0ZWE NA -3.89228889123996 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_ERWT0ZWE NA -3.89228889123996 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_GNV89A5P NA -2.62860804887377 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_GNV89A5P NA -2.62860804887377 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_H4B5Y6S0 NA 2.58429332910088 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_H4B5Y6S0 NA 2.58429332910088 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_HCP5C912 NA -3.09776443120689 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_HF3RNN2T NA 0.232819085791424 NA NA NA no change NA NA 9:100585927 9:100572518 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_HF3RNN2T NA 0.232819085791424 NA NA NA no change NA NA 9:100578551 9:100576516 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_HF3RNN2T NA 0.232819085791424 NA NA NA no change NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_HHPA8NJ2 NA -1.82111229116808 NA NA NA no change NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_HHPA8NJ2 NA -1.82111229116808 NA NA NA no change NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_HHPA8NJ2 NA -1.82111229116808 NA NA NA no change NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_HHPA8NJ2 NA -1.82111229116808 NA NA NA no change NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_HKZENFDA NA 2.23395136318244 NA NA NA differentially expressed NA NA 9:100585927 9:100561397 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_HKZENFDA NA 2.23395136318244 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_HKZENFDA NA 2.23395136318244 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_HZRM07TW NA -4.55192899219644 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_HZRM07TW NA -4.55192899219644 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_J8G4SH4Z NA -2.36013707697459 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_JFB984RG NA -0.197935469930834 NA NA NA no change NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_JFB984RG NA -0.197935469930834 NA NA NA no change NA NA 9:100586185 9:100561397 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_M15PW2N0 NA -4.13359440072455 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_N6NE6B3W NA -2.62294723163815 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_N6NE6B3W NA -2.62294723163815 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_N6NE6B3W NA -2.62294723163815 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_N6NE6B3W NA -2.62294723163815 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_NKEAAFMW NA -3.85868661053742 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_NKEAAFMW NA -3.85868661053742 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_NKRYMHEP NA -1.25727299258644 NA NA NA no change NA NA 9:100578551 9:100576516 ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_NKRYMHEP NA -1.25727299258644 NA NA NA no change NA NA 9:100578551 9:100561397 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_NT9NZYFD NA -4.4266649309698 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_NT9NZYFD NA -4.4266649309698 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_NT9NZYFD NA -4.4266649309698 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_QEYPFYHD NA -3.31528950371036 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 15 2 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_QEYPFYHD NA -3.31528950371036 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_QEYPFYHD NA -3.31528950371036 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_QEYPFYHD NA -3.31528950371036 NA NA NA differentially expressed NA NA 9:100578551 9:100547744 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_QEYPFYHD NA -3.31528950371036 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_QPPPGYP4 NA -3.4701371583808 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_QPPPGYP4 NA -3.4701371583808 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_QWNBZ9RJ NA -3.79327705320316 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_QWNBZ9RJ NA -3.79327705320316 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_QWNBZ9RJ NA -3.79327705320316 NA NA NA differentially expressed NA NA 9:100578551 9:100547744 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_RCC8BXVE NA -2.66294542207823 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_RCC8BXVE NA -2.66294542207823 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_RCC8BXVE NA -2.66294542207823 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_TV5B86ZD NA 1.7957918979963 NA NA NA no change NA NA 9:100585927 9:100498765 ARRIBA in-frame 4 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_TV5B86ZD NA 1.7957918979963 NA NA NA no change NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_TV5B86ZD NA 1.7957918979963 NA NA NA no change NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_V96WVE3Z NA -4.26732335277419 NA NA NA differentially expressed NA NA 9:100649183 9:100576516 ARRIBA other 1 2 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_VVFBW0YH NA -2.35037026493024 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_VVFBW0YH NA -2.35037026493024 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_W644VEVE NA -3.75093359639318 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_W644VEVE NA -3.75093359639318 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_W9AT0MR7 NA -2.85140165036636 NA NA NA differentially expressed NA NA 9:100578551 9:100454249 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_WCRKYV0T NA -3.78259904675389 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 4 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_WCRKYV0T NA -3.78259904675389 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_WH5HDE0A NA -4.02105759044538 NA NA NA differentially expressed NA NA 9:100586185 9:100498765 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_WH5HDE0A NA -4.02105759044538 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_YB2RXRHT NA -3.29070829010504 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_Z7PKVY9J NA 2.92337673068384 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_Z7PKVY9J NA 2.92337673068384 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_Z7PKVY9J NA 2.92337673068384 NA NA NA differentially expressed NA NA 9:100578551 9:100547744 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--MSANTD3-TMEFF1 BS_ZXYDSBM9 NA -3.86981900298134 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA -CAVIN4--TMEFF1 BS_0T17SY47 NA 2.41469327760261 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_0T17SY47 NA 2.41469327760261 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_1EBQ3T20 NA 2.5161817694973 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_1EBQ3T20 NA 2.5161817694973 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_1T19NFJ8 NA 2.73858583611006 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 6 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_1T19NFJ8 NA 2.73858583611006 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_1T19NFJ8 NA 2.73858583611006 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_1T19NFJ8 NA 2.73858583611006 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_2SFTWNVE NA 4.45661348775407 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_2SFTWNVE NA 4.45661348775407 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_2SFTWNVE NA 4.45661348775407 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_2SFTWNVE NA 4.45661348775407 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_2XD3MNKD NA 3.14671548491343 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_2XD3MNKD NA 3.14671548491343 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_2XD3MNKD NA 3.14671548491343 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_2XD3MNKD NA 3.14671548491343 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_3NWQXPQV NA 3.13309861254547 NA NA NA differentially expressed NA NA 9:100585927 9:100572518 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_3NWQXPQV NA 3.13309861254547 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_4D9DD103 NA 1.88310936542057 NA NA NA no change NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_4D9DD103 NA 1.88310936542057 NA NA NA no change NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_4D9DD103 NA 1.88310936542057 NA NA NA no change NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_4W68NV3M NA 4.12106664150652 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_4W68NV3M NA 4.12106664150652 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_4W68NV3M NA 4.12106664150652 NA NA NA differentially expressed NA NA 9:100578551 9:100547744 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_4W68NV3M NA 4.12106664150652 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_7FWZ518S NA 3.30949568279993 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_7FWZ518S NA 3.30949568279993 NA NA NA differentially expressed NA NA 9:100578551 9:100547744 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_7FWZ518S NA 3.30949568279993 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_8ZD6J47V NA 1.80290157433479 NA NA NA no change NA NA 9:100578551 9:100498765 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_9M5XJ10G NA 4.24535959612099 NA NA NA differentially expressed NA NA 9:100585927 9:100576516 ARRIBA frameshift 2 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_9V633J1X NA 1.48411835292389 NA NA NA no change NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_9V633J1X NA 1.48411835292389 NA NA NA no change NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_9V633J1X NA 1.48411835292389 NA NA NA no change NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_AMZ70B6F NA 4.60935383595741 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_AMZ70B6F NA 4.60935383595741 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_AMZ70B6F NA 4.60935383595741 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_BSV07M7Z NA 4.28453051291272 NA NA NA differentially expressed NA NA 9:100586185 9:100576516 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_BSV07M7Z NA 4.28453051291272 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_CQSAJ7BF NA 1.55054578242967 NA NA NA no change NA NA 9:100585927 9:100498765 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_DS438CXE NA 2.1461873113909 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_DVCQ8XDZ NA 2.2553931629935 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_EFE4YEK3 NA 5.08368710725573 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_EFE4YEK3 NA 5.08368710725573 NA NA NA differentially expressed NA NA 9:100585927 9:100572518 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_EFE4YEK3 NA 5.08368710725573 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_ERWT0ZWE NA 4.95203826661177 NA NA NA differentially expressed NA NA 9:100585927 9:100576516 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_ERWT0ZWE NA 4.95203826661177 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_ERWT0ZWE NA 4.95203826661177 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_ET8CJXSF NA 0.693212994036832 NA NA NA no change NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_ET8CJXSF NA 0.693212994036832 NA NA NA no change NA NA 9:100578551 9:100547744 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_GNV89A5P NA 4.74801859573352 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_GNV89A5P NA 4.74801859573352 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_H4B5Y6S0 NA 4.54066158023801 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_H4B5Y6S0 NA 4.54066158023801 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_HCP5C912 NA 1.67820016321403 NA NA NA no change NA NA 9:100585927 9:100498765 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_HF3RNN2T NA 4.54619778676135 NA NA NA differentially expressed NA NA 9:100585927 9:100572518 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_HF3RNN2T NA 4.54619778676135 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_HF3RNN2T NA 4.54619778676135 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_HHPA8NJ2 NA 4.30378047725024 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_HHPA8NJ2 NA 4.30378047725024 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_HHPA8NJ2 NA 4.30378047725024 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_HHPA8NJ2 NA 4.30378047725024 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_HKZENFDA NA 3.21667359401942 NA NA NA differentially expressed NA NA 9:100585927 9:100561397 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_HKZENFDA NA 3.21667359401942 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_HKZENFDA NA 3.21667359401942 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_HZRM07TW NA 4.89969815714838 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_HZRM07TW NA 4.89969815714838 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_J8G4SH4Z NA 4.70472834675477 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_JFB984RG NA 4.32371451351229 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_JFB984RG NA 4.32371451351229 NA NA NA differentially expressed NA NA 9:100586185 9:100561397 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_M15PW2N0 NA 4.06898416655768 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_M1T1K5WV NA 2.38514843813043 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_N6NE6B3W NA 0.662007729060955 NA NA NA no change NA NA 9:100585927 9:100498765 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_N6NE6B3W NA 0.662007729060955 NA NA NA no change NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_N6NE6B3W NA 0.662007729060955 NA NA NA no change NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_N6NE6B3W NA 0.662007729060955 NA NA NA no change NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_NKEAAFMW NA 4.41915017333421 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_NKEAAFMW NA 4.41915017333421 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_NKRYMHEP NA 4.65623529936931 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_NKRYMHEP NA 4.65623529936931 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_NT9NZYFD NA 2.92377067462266 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_NT9NZYFD NA 2.92377067462266 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_NT9NZYFD NA 2.92377067462266 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_QEYPFYHD NA 5.58642348608354 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 15 2 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_QEYPFYHD NA 5.58642348608354 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_QEYPFYHD NA 5.58642348608354 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_QEYPFYHD NA 5.58642348608354 NA NA NA differentially expressed NA NA 9:100578551 9:100547744 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_QEYPFYHD NA 5.58642348608354 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_QPPPGYP4 NA 4.17159095662062 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_QPPPGYP4 NA 4.17159095662062 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_QWNBZ9RJ NA 4.61125429404099 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_QWNBZ9RJ NA 4.61125429404099 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_QWNBZ9RJ NA 4.61125429404099 NA NA NA differentially expressed NA NA 9:100578551 9:100547744 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_RCC8BXVE NA 2.96151955259972 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_RCC8BXVE NA 2.96151955259972 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_RCC8BXVE NA 2.96151955259972 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_TV5B86ZD NA 2.18177925328296 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 4 1 high [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_TV5B86ZD NA 2.18177925328296 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_TV5B86ZD NA 2.18177925328296 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_V3Z3DB4N NA 2.23844974125264 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_V3Z3DB4N NA 2.23844974125264 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_V96WVE3Z NA 4.40160817554886 NA NA NA differentially expressed NA NA 9:100649183 9:100576516 ARRIBA other 1 2 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_VVFBW0YH NA 4.70975281218783 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_VVFBW0YH NA 4.70975281218783 NA NA NA differentially expressed NA NA 9:100578551 9:100561397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_W644VEVE NA 4.21297064228468 NA NA NA differentially expressed NA NA 9:100578551 9:100498765 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_W644VEVE NA 4.21297064228468 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_W9AT0MR7 NA 5.20206782667765 NA NA NA differentially expressed NA NA 9:100586185 9:100547744 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_WCRKYV0T NA 2.50828337511491 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 4 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_WCRKYV0T NA 2.50828337511491 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_WH5HDE0A NA 4.2687848942628 NA NA NA differentially expressed NA NA 9:100586185 9:100498765 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_WH5HDE0A NA 4.2687848942628 NA NA NA differentially expressed NA NA 9:100578551 9:100572518 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_XJTW0P8P NA 3.12762097448781 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_YB2RXRHT NA 1.58052087634604 NA NA NA no change NA NA 9:100585927 9:100498765 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_YE1MAQYJ NA 1.73337135003396 NA NA NA no change NA NA 9:100585927 9:100498765 ARRIBA in-frame 4 0 high [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_YE1MAQYJ NA 1.73337135003396 NA NA NA no change NA NA 9:100578551 9:100498765 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_Z7PKVY9J NA 4.21345147842192 NA NA NA differentially expressed NA NA 9:100585927 9:100498765 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_Z7PKVY9J NA 4.21345147842192 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_Z7PKVY9J NA 4.21345147842192 NA NA NA differentially expressed NA NA 9:100578551 9:100547744 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_ZH1FBX50 NA 1.61445912988567 NA NA NA no change NA NA 9:100585927 9:100498765 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_ZH1FBX50 NA 1.61445912988567 NA NA NA no change NA NA 9:100578551 9:100498765 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CAVIN4--TMEFF1 BS_ZXYDSBM9 NA 5.1875473433965 NA NA NA differentially expressed NA NA 9:100578551 9:100576516 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA -CBFA2T2--TBC1D22A BS_3J85TTZM 0.244839751790314 1.13610013507032 NA NA no change no change NA NA 20:33490301 22:46912074 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr20--chr22]],translocation CBFA2T2 NA TBC1D22A NA NA NA NA NA NA -CBWD1--GABRG3 BS_1EBQ3T20 -1.37308802076542 1.43124140459464 NA NA no change no change NA NA 9:172081 15:27326809 ARRIBA frameshift 8 0 high [INTERCHROMOSOMAL[chr9--chr15]],translocation CBWD1 NA GABRG3 NA NA NA NA NA NA -CBWD1--GABRG3 BS_8ZD6J47V -2.68440891260863 1.91998269768874 NA NA differentially expressed no change NA NA 9:172081 15:27326809 ARRIBA frameshift 9 0 high [INTERCHROMOSOMAL[chr9--chr15]],translocation CBWD1 NA GABRG3 NA NA NA NA NA NA -CBWD1--GABRG3 BS_M8EA6R2A -1.8350165773512 1.97979534561876 NA NA no change no change NA NA 9:172081 15:27326809 ARRIBA frameshift 7 0 high [INTERCHROMOSOMAL[chr9--chr15]],translocation CBWD1 NA GABRG3 NA NA NA NA NA NA -CBX6--SCUBE1 BS_1D6PZNKN -0.0477099041522148 -0.211311720082115 NA NA no change no change NA NA 22:38871480 22:43339235 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr22:4.32Mb]],duplication CBX6 NA SCUBE1 NA NA NA NA NA NA -CC2D2A--CC2D2A BS_MKM0EEN1 1.5216546359465 1.5216546359465 NA NA no change no change NA NA 4:15599706 4:15586157 ARRIBA in-frame 42 6 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing CC2D2A NA CC2D2A NA NA NA NA NA NA -CCAR1--GRID1 BS_4QW2S1Q8 0.0999823876854951 0.753606295961801 NA NA no change no change NA NA 10:68761192 10:86206648 ARRIBA frameshift 13 1 high [INTRACHROMOSOMAL[chr10:16.81Mb]],inversion CCAR1 NA GRID1 NA TumorSuppressorGene NA NA NA NA -CCAR1--GRID1 BS_4QW2S1Q8 0.0999823876854951 0.753606295961801 NA NA no change no change NA NA 10:68761192 10:86139024 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:16.81Mb]],inversion CCAR1 NA GRID1 NA TumorSuppressorGene NA NA NA NA -CCAR1--GRID1 BS_MX23ZY0Y 1.37454799915113 0.794956898912534 NA NA no change no change NA NA 10:68761192 10:86206648 ARRIBA frameshift 38 2 high [INTRACHROMOSOMAL[chr10:16.81Mb]],inversion CCAR1 NA GRID1 NA TumorSuppressorGene NA NA NA NA -CCAR1--GRID1 BS_P9JP6JFA -0.0675025812191853 -2.80722627977232 NA NA no change differentially expressed NA NA 10:68761192 10:86206648 ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chr10:16.81Mb]],inversion CCAR1 NA GRID1 NA TumorSuppressorGene NA NA NA NA -CCDC134--MPPED1(6818)/EFCAB6-AS1(1441) BS_1HQ76V6D 2.18836578058005 -0.626980083076661 NA 15.4124440321431 differentially expressed no change NA differentially expressed 22:41813975 22:43514666 ARRIBA frameshift 1 3 medium [],deletion CCDC134 NA MPPED1 EFCAB6-AS1 NA NA NA NA NA -CCDC162P--CCDC162P BS_7BTZQKYY 2.12574708787012 2.12574708787012 NA NA differentially expressed differentially expressed NA NA 6:109227649 6:109203715 ARRIBA other 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.19Mb]],duplication/non-canonical_splicing CCDC162P NA CCDC162P NA NA NA NA NA NA -CCDC171--CCDC171 BS_0HW7W7SD 0.31091106294394 0.31091106294394 NA NA no change no change NA NA 9:15591556 9:15563978 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.51Mb]],duplication/non-canonical_splicing CCDC171 NA CCDC171 NA NA NA NA NA NA -CCDC171--CCDC171 BS_1EBQ3T20 -0.460684128713445 -0.460684128713445 NA NA no change no change NA NA 9:15784694 9:15563978 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.51Mb]],duplication/non-canonical_splicing CCDC171 NA CCDC171 NA NA NA NA NA NA -CCDC171--CCDC171 BS_FEPRNEXX 1.19915280047879 1.19915280047879 NA NA no change no change NA NA 9:15784694 9:15695235 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.51Mb]],duplication/non-canonical_splicing CCDC171 NA CCDC171 NA NA NA NA NA NA -CCDC171--CCDC171 BS_M4NVX721 -0.729028355228212 -0.729028355228212 NA NA no change no change NA NA 9:15729798 9:15695235 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.51Mb]],duplication/non-canonical_splicing CCDC171 NA CCDC171 NA NA NA NA NA NA -CCDC171--CCDC171 BS_WCRKYV0T -0.34619308910603 -0.34619308910603 NA NA no change no change NA NA 9:15695337 9:15563978 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.51Mb]],duplication/non-canonical_splicing CCDC171 NA CCDC171 NA NA NA NA NA NA -CCDC171--CCDC171 BS_ZR96A4FH 0.667091627967222 0.667091627967222 NA NA no change no change NA NA 9:15729798 9:15695235 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.51Mb]],duplication/non-canonical_splicing CCDC171 NA CCDC171 NA NA NA NA NA NA -CCDC171--PES1P2(36257)/AL360089.1(1805) BS_H1ZS5FMZ 2.83638320918774 -0.439676366696124 NA NA differentially expressed no change NA NA 9:15920422 9:14024166 ARRIBA frameshift 3 1 high [],duplication CCDC171 NA PES1P2 AL360089.1 NA NA NA NA NA -CCDC171--PSAT1(34023)/AL592221.1(225042) BS_A0DYVX9J -0.374312664127289 1.65554949988393 NA NA no change no change NA NA 9:15553302 9:78364116 ARRIBA other 6 0 high [],inversion CCDC171 NA PSAT1 AL592221.1 NA NA NA NA NA -CCDC178--CCDC178 BS_QSTAVWGE 7.95428562396467 7.95428562396467 NA NA differentially expressed differentially expressed NA NA 18:32974547 18:33348975 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.50Mb]],duplication/non-canonical_splicing CCDC178 NA CCDC178 NA NA NA NA NA NA -CCDC3--CCDC3 BS_2XD3MNKD -0.754017786126206 -0.754017786126206 NA NA no change no change NA NA 10:12998338 10:13074100 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA -CCDC3--CCDC3 BS_470DYRJQ -0.534121685498419 -0.534121685498419 NA NA no change no change NA NA 10:12998338 10:13074100 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA -CCDC3--CCDC3 BS_5PEFNDCY -1.11739141832788 -1.11739141832788 NA NA no change no change NA NA 10:12998338 10:13007105 ARRIBA frameshift 6 1 medium [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication CCDC3 NA CCDC3 NA NA NA NA NA NA -CCDC3--CCDC3 BS_AMQGM1V9 0.752185116011753 0.752185116011753 NA NA no change no change NA NA 10:12998338 10:13074100 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA -CCDC3--CCDC3 BS_HCP5C912 -0.0319523631173865 -0.0319523631173865 NA NA no change no change NA NA 10:12998338 10:13074100 ARRIBA frameshift 13 2 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA -CCDC3--CCDC3 BS_JXNZYGCR -0.582428789804158 -0.582428789804158 NA NA no change no change NA NA 10:12998338 10:13074100 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA -CCDC3--CCDC3 BS_N6NE6B3W -1.13659121464051 -1.13659121464051 NA NA no change no change NA NA 10:12998338 10:13007105 ARRIBA frameshift 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication CCDC3 NA CCDC3 NA NA NA NA NA NA -CCDC3--CCDC3 BS_QC3XCE6X 0.0977801084171813 0.0977801084171813 NA NA no change no change NA NA 10:12998338 10:13074100 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA -CCDC3--CCDC3 BS_QNAQGAV6 0.516829028538914 0.516829028538914 NA NA no change no change NA NA 10:12998338 10:13074100 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA -CCDC3--CCDC3 BS_RCC8BXVE -1.63016874423353 -1.63016874423353 NA NA no change no change NA NA 10:12998338 10:13074100 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA -CCDC3--CCDC3 BS_SFKZSJN1 -1.48309827222596 -1.48309827222596 NA NA no change no change NA NA 10:12998338 10:13074100 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA -CCDC3--CCDC3 BS_YMAJC22S 0.378596866690637 0.378596866690637 NA NA no change no change NA NA 10:12998338 10:13074100 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA -CCDC3--CCDC3 BS_ZR96A4FH 0.28020951066181 0.28020951066181 NA NA no change no change NA NA 10:12998338 10:13074100 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA -CCDC36--LHFPL2 BS_6JHXXVR7 19.0772704917185 5.89175889039359 NA NA differentially expressed differentially expressed NA NA 3:49244733 5:78564871 ARRIBA frameshift 74 7 high [INTERCHROMOSOMAL[chr3--chr5]],translocation CCDC36 NA LHFPL2 NA NA NA NA NA NA -CCDC36--LHFPL2 BS_6JHXXVR7 19.0772704917185 5.89175889039359 NA NA differentially expressed differentially expressed NA NA 3:49241389 5:78564871 ARRIBA frameshift 1 2 high [INTERCHROMOSOMAL[chr3--chr5]],translocation CCDC36 NA LHFPL2 NA NA NA NA NA NA -CCDC36--LHFPL2 BS_KE56MMY0 17.6670343106498 4.88514302894691 NA NA differentially expressed differentially expressed NA NA 3:49244733 5:78564871 ARRIBA frameshift 21 0 high [INTERCHROMOSOMAL[chr3--chr5]],translocation CCDC36 NA LHFPL2 NA NA NA NA NA NA -CCDC36--LHFPL2 BS_KE56MMY0 17.6670343106498 4.88514302894691 NA NA differentially expressed differentially expressed NA NA 3:49241389 5:78564871 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr3--chr5]],translocation CCDC36 NA LHFPL2 NA NA NA NA NA NA -CCDC39--CCDC39 BS_4B0BAVTX 3.74492089121546 3.74492089121546 NA NA differentially expressed differentially expressed NA NA 3:180616281 3:180711382 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.27Mb]],duplication/non-canonical_splicing CCDC39 NA CCDC39 NA NA NA NA NA NA -CCDC62--DENR BS_WGK8ZMVA 0.926811013575125 0.780948685339898 NA NA no change no change NA NA 12:122792121 12:122762187 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:+:[3263]],duplication CCDC62 NA DENR NA NA Oncogene NA NA NA -CCDC66--ULK4 BS_FAQQ0GCQ 0.218188716452202 3.11288226888775 NA NA no change differentially expressed NA NA 3:56594028 3:41625422 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:14.59Mb]],duplication/5'-5' CCDC66 NA ULK4 NA NA Kinase, Kinase NA NA NA -CCDC68--AC102797.1 BS_4B0BAVTX 3.41484562485447 NA NA NA differentially expressed NA NA NA 18:54907786 18:47511740 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr18:7.34Mb]],inversion CCDC68 NA AC102797.1 NA NA NA NA NA NA -CCDC68--CCDC39 BS_4B0BAVTX 3.41484562485447 3.74492089121546 NA NA differentially expressed differentially expressed NA NA 18:54907786 3:180619970 ARRIBA frameshift 12 3 high [INTERCHROMOSOMAL[chr18--chr3]],translocation CCDC68 NA CCDC39 NA NA NA NA NA NA -CCDC68--CCDC39 BS_4B0BAVTX 3.41484562485447 3.74492089121546 NA NA differentially expressed differentially expressed NA NA 18:54917913 3:180619970 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr18--chr3]],translocation CCDC68 NA CCDC39 NA NA NA NA NA NA -CCDC68--CCDC39 BS_4B0BAVTX 3.41484562485447 3.74492089121546 NA NA differentially expressed differentially expressed NA NA 18:54907786 3:180619365 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr18--chr3]],translocation CCDC68 NA CCDC39 NA NA NA NA NA NA -CCDC88A--ALK BS_9XVACXP0 2.26469536393717 6.96445284389594 NA NA differentially expressed differentially expressed NA NA 2:55343648 2:29223528 ARRIBA in-frame 57 4 high [INTRACHROMOSOMAL[chr2:25.37Mb]],deletion CCDC88A NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -CCDC9--NPAS1 BS_7327SDAQ -0.574786917793204 1.40804730154861 NA NA no change no change NA NA 19:47256609 19:47021006 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr19:0.21Mb]],duplication CCDC9 NA NPAS1 NA NA TranscriptionFactor NA NA NA -CCDC9--NPAS1 BS_7327SDAQ -0.574786917793204 1.40804730154861 NA NA no change no change NA NA 19:47256609 19:47032278 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr19:0.21Mb]],duplication CCDC9 NA NPAS1 NA NA TranscriptionFactor NA NA NA -CCM2--AMPH BS_T1YHK6B7 -1.75500811274337 0.146772121454926 NA NA no change no change NA NA 7:45000363 7:38436388 ARRIBA in-frame 6 0 high [INTRACHROMOSOMAL[chr7:6.37Mb]],inversion CCM2 NA AMPH NA NA NA NA NA NA -CCND1--MYO16 BS_23QW0BBA 10.5710961714118 17.0127688625013 NA NA differentially expressed differentially expressed NA NA 11:69643472 13:109188586 ARRIBA frameshift 22 1 medium [INTERCHROMOSOMAL[chr11--chr13]],translocation CCND1 NA MYO16 NA CosmicCensus, Oncogene NA NA NA NA -CCND1--MYO16-AS1 BS_23QW0BBA 10.5710961714118 8.10404183638938 NA NA differentially expressed differentially expressed NA NA 11:69643472 13:109188586 ARRIBA frameshift 22 1 medium [INTERCHROMOSOMAL[chr11--chr13]],translocation/5'-5' CCND1 NA MYO16-AS1 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--AC010145.1 BS_W644VEVE 10.5051335938283 NA NA NA differentially expressed NA NA NA 12:4278919 2:16011173 ARRIBA frameshift 11 0 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation/5'-5' CCND2 NA AC010145.1 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--AC010745.1(16985)/AC010745.2(2836) BS_W644VEVE 10.5051335938283 171.467593322993 NA 277.880413973593 differentially expressed differentially expressed NA differentially expressed 12:4288990 2:16221211 ARRIBA frameshift 17 1 medium [],translocation CCND2 NA AC010745.1 AC010745.2 CosmicCensus, Oncogene NA NA NA NA -CCND2--AC010880.1 BS_W644VEVE 10.5051335938283 NA NA NA differentially expressed NA NA NA 12:4300052 2:16392253 ARRIBA frameshift 45 2 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation CCND2 NA AC010880.1 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--AC010880.1 BS_W644VEVE 10.5051335938283 NA NA NA differentially expressed NA NA NA 12:4278919 2:16392253 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation CCND2 NA AC010880.1 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--AC010880.1 BS_W644VEVE 10.5051335938283 NA NA NA differentially expressed NA NA NA 12:4288990 2:16392253 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr2]],translocation CCND2 NA AC010880.1 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--AC113608.1(13988)/snoU13(19438) BS_W644VEVE 10.5051335938283 NA NA NA differentially expressed NA NA NA 12:4288990 2:15884231 ARRIBA frameshift 6 0 medium [],translocation CCND2 NA AC113608.1 snoU13 CosmicCensus, Oncogene NA NA NA NA -CCND2--ADARB2 BS_A0DYVX9J 11.4918089677634 3.32854849916965 NA NA differentially expressed differentially expressed NA NA 12:4278919 10:1379160 ARRIBA in-frame 6 3 medium [INTERCHROMOSOMAL[chr12--chr10]],translocation CCND2 NA ADARB2 NA CosmicCensus, Oncogene Oncogene NA NA NA -CCND2--ADARB2 BS_A0DYVX9J 11.4918089677634 3.32854849916965 NA NA differentially expressed differentially expressed NA NA 12:4278919 10:1363917 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr12--chr10]],translocation CCND2 NA ADARB2 NA CosmicCensus, Oncogene Oncogene NA NA NA -CCND2--AL451164.2(5175)/AL451164.1(7789) BS_A0DYVX9J 11.4918089677634 NA NA NA differentially expressed NA NA NA 12:4288990 10:3232582 ARRIBA frameshift 5 3 medium [],translocation CCND2 NA AL451164.2 AL451164.1 CosmicCensus, Oncogene NA NA NA NA -CCND2--B4GALNT3 BS_W644VEVE 10.5051335938283 9.84057173156904 NA NA differentially expressed differentially expressed NA NA 12:4278919 12:534102 ARRIBA frameshift 14 1 medium [INTRACHROMOSOMAL[chr12:3.71Mb]],inversion/3'-3' CCND2 NA B4GALNT3 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--B4GALNT3 BS_W644VEVE 10.5051335938283 9.84057173156904 NA NA differentially expressed differentially expressed NA NA 12:4278919 12:557608 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr12:3.71Mb]],duplication CCND2 NA B4GALNT3 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--B4GALNT3 BS_W644VEVE 10.5051335938283 9.84057173156904 NA NA differentially expressed differentially expressed NA NA 12:4276220 12:535166 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr12:3.71Mb]],duplication CCND2 NA B4GALNT3 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--B4GALNT3 BS_W644VEVE 10.5051335938283 9.84057173156904 NA NA differentially expressed differentially expressed NA NA 12:4278919 12:535166 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:3.71Mb]],duplication CCND2 NA B4GALNT3 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--CRACR2A BS_W644VEVE 10.5051335938283 28.5413150224443 NA NA differentially expressed differentially expressed NA NA 12:4278919 12:3713317 ARRIBA frameshift 4 2 medium [INTRACHROMOSOMAL[chr12:0.51Mb]],inversion CCND2 NA CRACR2A NA CosmicCensus, Oncogene NA NA NA NA -CCND2--CRACR2A BS_W644VEVE 10.5051335938283 28.5413150224443 NA NA differentially expressed differentially expressed NA NA 12:4288990 12:3713317 ARRIBA frameshift 2 3 medium [INTRACHROMOSOMAL[chr12:0.51Mb]],inversion CCND2 NA CRACR2A NA CosmicCensus, Oncogene NA NA NA NA -CCND2--CRACR2A BS_W644VEVE 10.5051335938283 28.5413150224443 NA NA differentially expressed differentially expressed NA NA 12:4288990 12:3659654 ARRIBA frameshift 1 3 medium [INTRACHROMOSOMAL[chr12:0.51Mb]],inversion CCND2 NA CRACR2A NA CosmicCensus, Oncogene NA NA NA NA -CCND2--CRACR2A BS_W644VEVE 10.5051335938283 28.5413150224443 NA NA differentially expressed differentially expressed NA NA 12:4276220 12:3713317 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr12:0.51Mb]],inversion CCND2 NA CRACR2A NA CosmicCensus, Oncogene NA NA NA NA -CCND2--CRACR2A BS_W644VEVE 10.5051335938283 28.5413150224443 NA NA differentially expressed differentially expressed NA NA 12:4288990 12:3641838 ARRIBA in-frame 1 2 medium [INTRACHROMOSOMAL[chr12:0.51Mb]],inversion CCND2 NA CRACR2A NA CosmicCensus, Oncogene NA NA NA NA -CCND2--CRACR2A BS_W644VEVE 10.5051335938283 28.5413150224443 NA NA differentially expressed differentially expressed NA NA 12:4278919 12:3638454 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr12:0.51Mb]],inversion CCND2 NA CRACR2A NA CosmicCensus, Oncogene NA NA NA NA -CCND2--MYCNOS BS_W644VEVE 10.5051335938283 14.3828701915834 NA NA differentially expressed differentially expressed NA NA 12:4278919 2:15941097 ARRIBA frameshift 43 4 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation CCND2 NA MYCNOS NA CosmicCensus, Oncogene NA NA NA NA -CCND2--MYCNOS BS_W644VEVE 10.5051335938283 14.3828701915834 NA NA differentially expressed differentially expressed NA NA 12:4288990 2:15941097 ARRIBA frameshift 1 4 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation CCND2 NA MYCNOS NA CosmicCensus, Oncogene NA NA NA NA -CCND2--MYCNOS BS_W644VEVE 10.5051335938283 14.3828701915834 NA NA differentially expressed differentially expressed NA NA 12:4278919 2:15921122 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr12--chr2]],translocation CCND2 NA MYCNOS NA CosmicCensus, Oncogene NA NA NA NA -CCND2--MYCNOS BS_W644VEVE 10.5051335938283 14.3828701915834 NA NA differentially expressed differentially expressed NA NA 12:4274235 2:15921122 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr2]],translocation CCND2 NA MYCNOS NA CosmicCensus, Oncogene NA NA NA NA -CCND2--MYRIP BS_81SP2HX4 8.10696527319421 -1.92398057528222 NA NA differentially expressed no change NA NA 12:4278919 3:40044050 ARRIBA frameshift 2 1 low [INTERCHROMOSOMAL[chr12--chr3]],translocation CCND2 NA MYRIP NA CosmicCensus, Oncogene NA NA NA NA -CCND2--NINJ2 BS_81SP2HX4 8.10696527319421 2.12211056537719 NA NA differentially expressed differentially expressed NA NA 12:4304501 12:576711 ARRIBA other 105 17 high [INTRACHROMOSOMAL[chr12:3.61Mb]],inversion CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--NINJ2 BS_81SP2HX4 8.10696527319421 2.12211056537719 NA NA differentially expressed differentially expressed NA NA 12:4288990 12:566178 ARRIBA in-frame 51 7 medium [INTRACHROMOSOMAL[chr12:3.61Mb]],inversion CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--NINJ2 BS_W644VEVE 10.5051335938283 4.30346219338763 NA NA differentially expressed differentially expressed NA NA 12:4304501 12:576711 ARRIBA other 539 234 high [INTRACHROMOSOMAL[chr12:3.61Mb]],inversion CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--NINJ2 BS_W644VEVE 10.5051335938283 4.30346219338763 NA NA differentially expressed differentially expressed NA NA 12:4288990 12:566178 ARRIBA in-frame 96 16 medium [INTRACHROMOSOMAL[chr12:3.61Mb]],inversion CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--NINJ2 BS_W644VEVE 10.5051335938283 4.30346219338763 NA NA differentially expressed differentially expressed NA NA 12:4286434 12:566178 ARRIBA other 11 0 medium [INTRACHROMOSOMAL[chr12:3.61Mb]],deletion/3'-3' CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--NINJ2 BS_W644VEVE 10.5051335938283 4.30346219338763 NA NA differentially expressed differentially expressed NA NA 12:4276220 12:566178 ARRIBA in-frame 5 2 medium [INTRACHROMOSOMAL[chr12:3.61Mb]],inversion CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--NINJ2 BS_W644VEVE 10.5051335938283 4.30346219338763 NA NA differentially expressed differentially expressed NA NA 12:4278919 12:566178 ARRIBA frameshift 2 3 medium [INTRACHROMOSOMAL[chr12:3.61Mb]],inversion CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--NINJ2 BS_W644VEVE 10.5051335938283 4.30346219338763 NA NA differentially expressed differentially expressed NA NA 12:4288990 12:564681 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr12:3.61Mb]],inversion CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--NINJ2 BS_W644VEVE 10.5051335938283 4.30346219338763 NA NA differentially expressed differentially expressed NA NA 12:4288990 12:565980 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr12:3.61Mb]],inversion CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--PARP11 BS_81SP2HX4 8.10696527319421 13.0055781198645 NA NA differentially expressed differentially expressed NA NA 12:4288907 12:3846016 ARRIBA frameshift 8 1 medium [INTRACHROMOSOMAL[chr12:0.40Mb]],duplication/5'-5' CCND2 NA PARP11 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--PRMT8 BS_W644VEVE 10.5051335938283 0.581745157579365 NA NA differentially expressed no change NA NA 12:4275296 12:3568706 ARRIBA other 22 2 high [INTRACHROMOSOMAL[chr12:0.68Mb]],inversion/3'-3' CCND2 NA PRMT8 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--RN7SL104P(19927)/AC010145.1(26141) BS_W644VEVE 10.5051335938283 NA NA NA differentially expressed NA NA NA 12:4278919 2:15970908 ARRIBA frameshift 16 3 medium [],translocation CCND2 NA RN7SL104P AC010145.1 CosmicCensus, Oncogene NA NA NA NA -CCND2--TSPAN9 BS_W644VEVE 10.5051335938283 1.93250949774353 NA NA differentially expressed no change NA NA 12:4278919 12:3278421 ARRIBA frameshift 11 0 medium [INTRACHROMOSOMAL[chr12:0.99Mb]],duplication CCND2 NA TSPAN9 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--TSPAN9 BS_W644VEVE 10.5051335938283 1.93250949774353 NA NA differentially expressed no change NA NA 12:4288990 12:3278421 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr12:0.99Mb]],duplication CCND2 NA TSPAN9 NA CosmicCensus, Oncogene NA NA NA NA -CCND2--WNK1 BS_W644VEVE 10.5051335938283 1.94863063009368 NA NA differentially expressed no change NA NA 12:4300052 12:813642 ARRIBA frameshift 4 5 medium [INTRACHROMOSOMAL[chr12:3.36Mb]],duplication CCND2 NA WNK1 NA CosmicCensus, Oncogene Kinase, Kinase NA NA NA -CCND2--WNT5B BS_W644VEVE 10.5051335938283 7.93034064068299 NA NA differentially expressed differentially expressed NA NA 12:4278919 12:1631298 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr12:2.63Mb]],duplication CCND2 NA WNT5B NA CosmicCensus, Oncogene NA NA NA NA -CCND2--WNT5B BS_W644VEVE 10.5051335938283 7.93034064068299 NA NA differentially expressed differentially expressed NA NA 12:4276220 12:1631298 ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr12:2.63Mb]],duplication CCND2 NA WNT5B NA CosmicCensus, Oncogene NA NA NA NA -CCND2--WNT5B BS_W644VEVE 10.5051335938283 7.93034064068299 NA NA differentially expressed differentially expressed NA NA 12:4288990 12:1617028 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr12:2.63Mb]],inversion/3'-3' CCND2 NA WNT5B NA CosmicCensus, Oncogene NA NA NA NA -CCND2--WNT5B BS_W644VEVE 10.5051335938283 7.93034064068299 NA NA differentially expressed differentially expressed NA NA 12:4288990 12:1645794 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:2.63Mb]],duplication CCND2 NA WNT5B NA CosmicCensus, Oncogene NA NA NA NA -CCND2--WNT5B BS_W644VEVE 10.5051335938283 7.93034064068299 NA NA differentially expressed differentially expressed NA NA 12:4288990 12:1631298 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:2.63Mb]],duplication CCND2 NA WNT5B NA CosmicCensus, Oncogene NA NA NA NA -CCND2-AS1--PRMT8 BS_W644VEVE 2.35256618193704 0.581745157579365 NA NA differentially expressed no change NA NA 12:4263845 12:3557951 ARRIBA other 23 4 medium [INTRACHROMOSOMAL[chr12:0.65Mb]],inversion CCND2-AS1 NA PRMT8 NA Oncogene NA NA NA NA -CCND2-AS1--PRMT8 BS_W644VEVE 2.35256618193704 0.581745157579365 NA NA differentially expressed no change NA NA 12:4276059 12:3568706 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr12:0.65Mb]],inversion CCND2-AS1 NA PRMT8 NA Oncogene NA NA NA NA -CCND2-AS1--WDR37 BS_A0DYVX9J 5.02658334261504 7.883450804535 NA NA differentially expressed differentially expressed NA NA 12:4276059 10:1124218 ARRIBA other 6 1 medium [INTERCHROMOSOMAL[chr12--chr10]],translocation CCND2-AS1 NA WDR37 NA Oncogene NA NA NA NA -CCND2-AS2--PRMT8 BS_W644VEVE 1.32758421882622 0.581745157579365 NA NA no change no change NA NA 12:4275022 12:3568706 ARRIBA other 20 0 high [INTRACHROMOSOMAL[chr12:0.66Mb]],inversion CCND2-AS2 NA PRMT8 NA NA NA NA NA NA -CCND2-AS2--PRMT8 BS_W644VEVE 1.32758421882622 0.581745157579365 NA NA no change no change NA NA 12:4275022 12:3569477 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:0.66Mb]],inversion CCND2-AS2 NA PRMT8 NA NA NA NA NA NA -CCND3--AMPD3 BS_6JHXXVR7 1.39128618723833 0.282932725176587 NA NA no change no change NA NA 6:42048501 11:10461515 ARRIBA other 44 11 high [INTERCHROMOSOMAL[chr6--chr11]],translocation CCND3 NA AMPD3 NA CosmicCensus, Oncogene NA NA NA NA -CCND3--AMPD3 BS_KE56MMY0 1.37690470539181 0.513037737344214 NA NA no change no change NA NA 6:42048501 11:10461515 ARRIBA other 8 1 high [INTERCHROMOSOMAL[chr6--chr11]],translocation CCND3 NA AMPD3 NA CosmicCensus, Oncogene NA NA NA NA -CCND3--PTCRA BS_6JHXXVR7 1.39128618723833 9.65868817944644 NA NA no change differentially expressed NA NA 6:42048501 6:42923027 ARRIBA other 6 2 high [INTRACHROMOSOMAL[chr6:0.87Mb]],inversion CCND3 NA PTCRA NA CosmicCensus, Oncogene Oncogene NA NA NA -CCND3--PTCRA BS_6JHXXVR7 1.39128618723833 9.65868817944644 NA NA no change differentially expressed NA NA 6:42048501 6:42924229 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr6:0.87Mb]],inversion CCND3 NA PTCRA NA CosmicCensus, Oncogene Oncogene NA NA NA -CCND3--PTCRA BS_6JHXXVR7 1.39128618723833 9.65868817944644 NA NA no change differentially expressed NA NA 6:42048501 6:42922218 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr6:0.87Mb]],inversion CCND3 NA PTCRA NA CosmicCensus, Oncogene Oncogene NA NA NA -CCND3--PTCRA BS_KE56MMY0 1.37690470539181 7.14640970628463 NA NA no change differentially expressed NA NA 6:42048501 6:42924229 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:0.87Mb]],inversion CCND3 NA PTCRA NA CosmicCensus, Oncogene Oncogene NA NA NA -CCND3--PTCRA BS_KE56MMY0 1.37690470539181 7.14640970628463 NA NA no change differentially expressed NA NA 6:42048501 6:42923027 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr6:0.87Mb]],inversion CCND3 NA PTCRA NA CosmicCensus, Oncogene Oncogene NA NA NA -CCSER1--PTPN13 BS_2SFTWNVE 13.2583806842862 -0.0666091688913873 NA NA differentially expressed no change NA NA 4:90628232 4:86805279 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr4:3.31Mb]],duplication CCSER1 NA PTPN13 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -CD109--CD109 BS_JSPR854S 8.89291265714136 8.89291265714136 NA NA differentially expressed differentially expressed NA NA 6:73766154 6:73756643 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.13Mb]],duplication/non-canonical_splicing CD109 NA CD109 NA Oncogene Oncogene NA NA NA -CD151--CYB561A3 BS_SXCZ3CXN 1.44042963812877 3.72531400823894 NA NA no change differentially expressed NA NA 11:834591 11:61357828 ARRIBA other 18 1 high [INTRACHROMOSOMAL[chr11:60.51Mb]],inversion CD151 NA CYB561A3 NA Oncogene NA NA NA NA -CD151--CYB561A3 BS_SXCZ3CXN 1.44042963812877 3.72531400823894 NA NA no change differentially expressed NA NA 11:833026 11:61357828 ARRIBA other 22 0 medium [INTRACHROMOSOMAL[chr11:60.51Mb]],inversion CD151 NA CYB561A3 NA Oncogene NA NA NA NA -CD151--CYB561A3 BS_SXCZ3CXN 1.44042963812877 3.72531400823894 NA NA no change differentially expressed NA NA 11:833026 11:61353992 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr11:60.51Mb]],inversion CD151 NA CYB561A3 NA Oncogene NA NA NA NA -CD151--CYB561A3 BS_SXCZ3CXN 1.44042963812877 3.72531400823894 NA NA no change differentially expressed NA NA 11:833022 11:61357828 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr11:60.51Mb]],inversion CD151 NA CYB561A3 NA Oncogene NA NA NA NA -CD151--CYB561A3 BS_SXCZ3CXN 1.44042963812877 3.72531400823894 NA NA no change differentially expressed NA NA 11:833026 11:61356728 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr11:60.51Mb]],inversion CD151 NA CYB561A3 NA Oncogene NA NA NA NA -CD151--TMEM138(15887)/TMEM216(6291) BS_SXCZ3CXN 1.44042963812877 0.954360917593679 NA 0.456337263747048 no change no change NA no change 11:834631 11:61385396 ARRIBA other 3 2 medium [],inversion CD151 NA TMEM138 TMEM216 Oncogene NA NA NA NA -CD2AP--PHACTR1 BS_4B0BAVTX 1.53435318993578 -0.296665600525888 NA NA no change no change NA NA 6:47582065 6:13053365 ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr6:34.19Mb]],duplication CD2AP NA PHACTR1 NA NA NA NA NA NA -CD2AP--PHACTR1 BS_4B0BAVTX 1.53435318993578 -0.296665600525888 NA NA no change no change NA NA 6:47582065 6:12933633 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr6:34.19Mb]],duplication CD2AP NA PHACTR1 NA NA NA NA NA NA -CD44--AC110058.1 BS_49FQXT2E 3.82347151617288 NA NA NA differentially expressed NA NA NA 11:35190065 11:29552360 ARRIBA frameshift 60 7 high [INTRACHROMOSOMAL[chr11:5.59Mb]],duplication CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA -CD44--AC110058.1 BS_49FQXT2E 3.82347151617288 NA NA NA differentially expressed NA NA NA 11:35189972 11:29552360 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr11:5.59Mb]],duplication CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA -CD44--AC124657.1(27989)/AL358944.1(54831) BS_49FQXT2E 3.82347151617288 NA NA NA differentially expressed NA NA NA 11:35190065 11:30112332 ARRIBA frameshift 3 0 medium [],duplication CD44 NA AC124657.1 AL358944.1 TumorSuppressorGene, Oncogene NA NA NA NA -CD44--OFCC1 BS_KE56MMY0 4.40527903309253 1.39788936275977 NA NA differentially expressed no change NA NA 11:35208206 6:9845593 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr11--chr6]],translocation CD44 NA OFCC1 NA TumorSuppressorGene, Oncogene NA NA NA NA -CD44--OFCC1 BS_KE56MMY0 4.40527903309253 1.39788936275977 NA NA differentially expressed no change NA NA 11:35190065 6:9845593 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr11--chr6]],translocation CD44 NA OFCC1 NA TumorSuppressorGene, Oncogene NA NA NA NA -CD44--WIZP1(5942)/MIR8054(7060) BS_49FQXT2E 3.82347151617288 8.23354064087672 NA NA differentially expressed differentially expressed NA NA 11:35190065 11:23412045 ARRIBA frameshift 63 3 high [],inversion CD44 NA WIZP1 MIR8054 TumorSuppressorGene, Oncogene NA NA NA NA -CDC26--UGCG(2644)/RNU6-710P(58622) BS_WKESC3XN 0.282150277537003 1.8436154825296 NA NA no change no change NA NA 9:113255993 9:111938013 ARRIBA other 3 0 medium [],inversion CDC26 NA UGCG RNU6-710P NA NA NA NA NA -CDC42BPA--MEG8 BS_742RHK1M 3.97477451803632 7.01871672352147 NA NA differentially expressed differentially expressed NA NA 1:227139576 14:100935772 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr1--chr14]],translocation CDC42BPA NA MEG8 NA Kinase NA NA NA NA -CDC42BPA--TMEM161B-AS1 BS_6JHXXVR7 0.158825674791609 -2.86603795131563 NA NA no change differentially expressed NA NA 1:227160543 5:88410073 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr1--chr5]],translocation CDC42BPA NA TMEM161B-AS1 NA Kinase NA NA NA NA -CDC42BPB--SETBP1 BS_XZTV0J8W 1.93802759865771 4.81123702614101 NA NA no change differentially expressed NA NA 14:102943664 18:44871140 ARRIBA other 1 2 medium [INTERCHROMOSOMAL[chr14--chr18]],translocation CDC42BPB NA SETBP1 NA Kinase CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -CDC5L--AL135908.1 BS_6JHXXVR7 2.32166597637352 NA NA NA differentially expressed NA NA NA 6:44424583 6:50587685 ARRIBA frameshift 33 0 high [INTRACHROMOSOMAL[chr6:6.14Mb]],inversion CDC5L NA AL135908.1 NA TranscriptionFactor NA NA NA NA -CDC5L--AL135908.1 BS_KE56MMY0 2.2493798984288 NA NA NA differentially expressed NA NA NA 6:44424583 6:50587685 ARRIBA frameshift 17 0 medium [INTRACHROMOSOMAL[chr6:6.14Mb]],inversion CDC5L NA AL135908.1 NA TranscriptionFactor NA NA NA NA -CDC5L--CPNE5 BS_6JHXXVR7 2.32166597637352 -1.78241061002393 NA NA differentially expressed no change NA NA 6:44424583 6:36740803 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr6:7.55Mb]],duplication/5'-5' CDC5L NA CPNE5 NA TranscriptionFactor NA NA NA NA -CDC5L--MYB BS_E1CGF3KV 4.53394714156923 9.02894310471745 NA NA differentially expressed differentially expressed NA NA 6:44429910 6:135217864 ARRIBA in-frame 8 0 high [INTRACHROMOSOMAL[chr6:90.73Mb]],deletion CDC5L NA MYB NA TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -CDCA4P1(15650)/ZDHHC21(1221)--ZDHHC21 BS_9M5XJ10G -0.751330054516686 0.98359641744989 0.98359641744989 NA no change no change no change NA 9:14609850 9:14674385 ARRIBA other 3 0 high [],duplication CDCA4P1 ZDHHC21 ZDHHC21 NA NA NA NA NA NA -CDCA4P1(2261)/ZDHHC21(14610)--ZDHHC21 BS_CHDGRYHJ -0.751330054516686 2.7718800417779 2.7718800417779 NA no change differentially expressed differentially expressed NA 9:14596461 9:14680162 ARRIBA other 1 2 high [],duplication CDCA4P1 ZDHHC21 ZDHHC21 NA NA NA NA NA NA -CDCP1--SRGAP1 BS_MV6ASWV9 9.70204631166557 7.30439275245447 NA NA differentially expressed differentially expressed NA NA 3:45146206 12:63983947 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr3--chr12]],translocation CDCP1 NA SRGAP1 NA TumorSuppressorGene NA NA NA NA -CDH10--CDH10 BS_7FWZ518S 0.216090943818237 0.216090943818237 NA NA no change no change NA NA 5:24535112 5:24537674 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CDH10--CDH10 BS_7XRN3CFX 0.13357491709741 0.13357491709741 NA NA no change no change NA NA 5:24535112 5:24537674 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CDH10--CDH10 BS_CXVJK2FY 0.140539930567771 0.140539930567771 NA NA no change no change NA NA 5:24491576 5:24505248 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CDH10--CDH10 BS_D2K9C7XR 0.619336264967629 0.619336264967629 NA NA no change no change NA NA 5:24535112 5:24537674 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CDH10--CDH10 BS_JH29M4KG 0.448222059369526 0.448222059369526 NA NA no change no change NA NA 5:24535112 5:24537674 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CDH10--CDH10 BS_N6NE6B3W 0.533017844689151 0.533017844689151 NA NA no change no change NA NA 5:24535112 5:24537674 ARRIBA frameshift 21 2 low [SELFIE,INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CDH10--CDH10 BS_QPPPGYP4 -1.25172681353453 -1.25172681353453 NA NA no change no change NA NA 5:24535112 5:24537674 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CDH10--CDH10 BS_S69QZAJR -1.01430164516955 -1.01430164516955 NA NA no change no change NA NA 5:24593260 5:24611139 ARRIBA frameshift 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr5:0.16Mb]],duplication CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CDH11--VPS13A BS_3BDAG9YN 8.25651857280998 2.31712835079055 NA NA differentially expressed differentially expressed NA NA 16:65121880 9:77403236 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr16--chr9]],translocation CDH11 NA VPS13A NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -CDH12--AC146944.1(62184)/AC139272.1(133734) BS_M1T1K5WV -1.00414435206617 NA NA NA no change NA NA NA 5:22212498 5:70617450 ARRIBA other 2 0 medium [],duplication CDH12 NA AC146944.1 AC139272.1 NA NA NA NA NA -CDH18--CDH18 BS_KZPR01BD 0.130609691950224 0.130609691950224 NA NA no change no change NA NA 5:19838759 5:19660346 ARRIBA frameshift 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr5:1.10Mb]],inversion/5'-5' CDH18 NA CDH18 NA NA NA NA NA NA -CDH18--CDH18 BS_MKM0EEN1 -0.576427853450109 -0.576427853450109 NA NA no change no change NA NA 5:19838759 5:19839242 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr5:1.10Mb]],duplication/non-canonical_splicing CDH18 NA CDH18 NA NA NA NA NA NA -CDH18--CDH18 BS_N6NE6B3W 2.32610270410978 2.32610270410978 NA NA differentially expressed differentially expressed NA NA 5:19721347 5:19839242 ARRIBA frameshift 45 4 low [SELFIE,INTRACHROMOSOMAL[chr5:1.10Mb]],duplication/non-canonical_splicing CDH18 NA CDH18 NA NA NA NA NA NA -CDH2--RNU6-1037P(14673)/MIR5011(120689) BS_GW0GKWMS 1.51252802770947 NA NA NA no change NA NA NA 18:28147673 18:66960895 ARRIBA frameshift 4 0 high [],inversion CDH2 NA RNU6-1037P MIR5011 NA NA NA NA NA -CDH20--CDH20 BS_3W07B2TG -1.7818655134958 -1.7818655134958 NA NA no change no change NA NA 18:61507560 18:61500383 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.22Mb]],duplication/non-canonical_splicing CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA -CDH20--CDH20 BS_8ZP3CBQA -0.00133656031047675 -0.00133656031047675 NA NA no change no change NA NA 18:61507560 18:61500383 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.22Mb]],duplication/non-canonical_splicing CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA -CDH20--CDH20 BS_9NJHQE9F -1.13190495981598 -1.13190495981598 NA NA no change no change NA NA 18:61507560 18:61500383 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.22Mb]],duplication/non-canonical_splicing CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA -CDH20--CDH20 BS_D2K9C7XR -0.210022154177675 -0.210022154177675 NA NA no change no change NA NA 18:61507560 18:61500383 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.22Mb]],duplication/non-canonical_splicing CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA -CDH20--CDH20 BS_GYXSDZ56 2.37690786458075 2.37690786458075 NA NA differentially expressed differentially expressed NA NA 18:61507560 18:61500383 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.22Mb]],duplication/non-canonical_splicing CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA -CDH20--CDH20 BS_PZVHMSYN -0.335371893915577 -0.335371893915577 NA NA no change no change NA NA 18:61507560 18:61500383 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.22Mb]],duplication/non-canonical_splicing CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA -CDH20--CDH20 BS_SFKZSJN1 1.98886096549727 1.98886096549727 NA NA no change no change NA NA 18:61507560 18:61500383 ARRIBA frameshift 15 2 low [SELFIE,INTRACHROMOSOMAL[chr18:0.22Mb]],duplication/non-canonical_splicing CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA -CDH20--CDH20 BS_X23724NJ -1.8394199482446 -1.8394199482446 NA NA no change no change NA NA 18:61507560 18:61500383 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.22Mb]],duplication/non-canonical_splicing CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA -CDH22--CDH22 BS_ZA9XT151 -0.010516779851605 -0.010516779851605 NA NA no change no change NA NA 20:46240963 20:46241257 ARRIBA frameshift 18 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.13Mb]],duplication/non-canonical_splicing CDH22 NA CDH22 NA NA NA NA NA NA -CDH7--CDH7 BS_470DYRJQ 2.16354943839152 2.16354943839152 NA NA differentially expressed differentially expressed NA NA 18:65824831 18:65809704 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA -CDH7--CDH7 BS_52MPKTJH 3.54748249267821 3.54748249267821 NA NA differentially expressed differentially expressed NA NA 18:65862917 18:65809704 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA -CDH7--CDH7 BS_7FWZ518S 1.74574171552475 1.74574171552475 NA NA no change no change NA NA 18:65824831 18:65809704 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA -CDH7--CDH7 BS_A3QZB9Y2 0.980586952180782 0.980586952180782 NA NA no change no change NA NA 18:65862917 18:65843812 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA -CDH7--CDH7 BS_B1HVNV0T 2.8708626176891 2.8708626176891 NA NA differentially expressed differentially expressed NA NA 18:65844065 18:65809704 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA -CDH7--CDH7 BS_FEPRNEXX 3.37044266489783 3.37044266489783 NA NA differentially expressed differentially expressed NA NA 18:65824831 18:65809704 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA -CDH7--CDH7 BS_G9XE3N9T 2.51310774237595 2.51310774237595 NA NA differentially expressed differentially expressed NA NA 18:65844065 18:65809704 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA -CDH7--CDH7 BS_K3ER45RV 3.24627381458307 3.24627381458307 NA NA differentially expressed differentially expressed NA NA 18:65824831 18:65809704 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA -CDH7--CDH7 BS_ME3HKN2C 2.26218739917504 2.26218739917504 NA NA differentially expressed differentially expressed NA NA 18:65862917 18:65857816 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA -CDH7--CDH7 BS_N6NE6B3W 3.07029482810862 3.07029482810862 NA NA differentially expressed differentially expressed NA NA 18:65862917 18:65809704 ARRIBA frameshift 7 3 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA -CDH7--CDH7 BS_QWNBZ9RJ 3.45616045050698 3.45616045050698 NA NA differentially expressed differentially expressed NA NA 18:65824831 18:65809704 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA -CDH7--CDH7 BS_V96WVE3Z 6.1046369015051 6.1046369015051 NA NA differentially expressed differentially expressed NA NA 18:65824831 18:65809704 ARRIBA in-frame 19 3 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA -CDH7--CDH7 BS_ZRM0W01M 3.18661804366776 3.18661804366776 NA NA differentially expressed differentially expressed NA NA 18:65862917 18:65809704 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA -CDH8--CDH8 BS_HCP5C912 1.52230170313202 1.52230170313202 NA NA no change no change NA NA 16:61817479 16:61825179 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.39Mb]],duplication/non-canonical_splicing CDH8 NA CDH8 NA NA NA NA NA NA -CDH8--CDH8 BS_KPT2WPHW 2.68772117942928 2.68772117942928 NA NA differentially expressed differentially expressed NA NA 16:61817479 16:61825179 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.39Mb]],duplication/non-canonical_splicing CDH8 NA CDH8 NA NA NA NA NA NA -CDH8--CDH8 BS_VMMJYN8Z 1.59648851094907 1.59648851094907 NA NA no change no change NA NA 16:61789346 16:61825179 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.39Mb]],duplication/non-canonical_splicing CDH8 NA CDH8 NA NA NA NA NA NA -CDHR1--DGKI BS_VA5T4KAA 5.12811016622418 3.51291067211345 NA NA differentially expressed differentially expressed NA NA 10:84205927 7:137610444 ARRIBA frameshift 64 4 high [INTERCHROMOSOMAL[chr10--chr7]],translocation/5'-5' CDHR1 NA DGKI NA NA NA NA NA NA -CDK11A--NBAS BS_JRYJGYC4 0.10954152400037 3.1358684255944 NA NA no change differentially expressed NA NA 1:1721596 2:15230622 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr1--chr2]],translocation/5'-5' CDK11A NA NBAS NA Oncogene, Kinase NA NA NA NA -CDK12--ABCA6 BS_RQSKD7PN 2.24834163545594 4.26008600022651 NA NA differentially expressed differentially expressed NA NA 17:39463117 17:69125035 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr17:29.51Mb]],inversion CDK12 NA ABCA6 NA CosmicCensus, Kinase NA NA NA NA -CDK13--ST7-AS2 BS_T1YHK6B7 2.27052368840023 -0.0598042091161661 NA NA differentially expressed no change NA NA 7:40078851 7:117081072 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:76.97Mb]],inversion CDK13 NA ST7-AS2 NA Kinase NA NA NA NA -CDK14--CDK14 BS_QHS3V0GP 1.57558609797448 1.57558609797448 NA NA no change no change NA NA 7:91045960 7:90726567 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.74Mb]],duplication/non-canonical_splicing CDK14 NA CDK14 NA Kinase Kinase NA NA NA -CDK14--KLF14(48759)/AC016831.6(7388) BS_V3Z3DB4N 5.4000049894713 0.290701008592063 NA 67.1127450984614 differentially expressed no change NA differentially expressed 7:90917724 7:130782820 ARRIBA frameshift 12 1 medium [],deletion CDK14 NA KLF14 AC016831.6 Kinase TranscriptionFactor NA NA NA -CDK14--MKLN1 BS_QHS3V0GP 1.57558609797448 3.71276538891591 NA NA no change differentially expressed NA NA 7:90726812 7:131429033 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_QHS3V0GP 1.57558609797448 3.71276538891591 NA NA no change differentially expressed NA NA 7:90726812 7:131397267 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_QHS3V0GP 1.57558609797448 3.71276538891591 NA NA no change differentially expressed NA NA 7:91045960 7:131429033 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_QHS3V0GP 1.57558609797448 3.71276538891591 NA NA no change differentially expressed NA NA 7:90726812 7:131411306 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_QHS3V0GP 1.57558609797448 3.71276538891591 NA NA no change differentially expressed NA NA 7:90747775 7:131429033 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:91045960 7:131429033 ARRIBA in-frame 39 18 high [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90747775 7:131429033 ARRIBA frameshift 25 13 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90726812 7:131429033 ARRIBA frameshift 29 8 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90790652 7:131429033 ARRIBA in-frame 19 16 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90747775 7:131387120 ARRIBA frameshift 3 13 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90726812 7:131411306 ARRIBA frameshift 3 8 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90726812 7:131387120 ARRIBA in-frame 1 8 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90726812 7:131375424 ARRIBA frameshift 1 8 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90726812 7:131399241 ARRIBA in-frame 1 8 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90726812 7:131437785 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:91045960 7:131437785 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90917724 7:131443481 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90747775 7:131437785 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:91045960 7:131443481 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90863269 7:131437785 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90790652 7:131445774 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90917724 7:131445774 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90666411 7:131429033 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90790652 7:131466276 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:91045960 7:131463217 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90790652 7:131463217 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--MKLN1 BS_V3Z3DB4N 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA 7:90863269 7:131463217 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA -CDK14--RNU6-1125P(26512)/RPL31P35(8715) BS_V3Z3DB4N 5.4000049894713 NA NA 97.1368350765486 differentially expressed NA NA differentially expressed 7:90917724 7:54647643 ARRIBA frameshift 41 5 high [],duplication CDK14 NA RNU6-1125P RPL31P35 Kinase NA NA NA NA -CDK14--STEAP2-AS1 BS_V3Z3DB4N 5.4000049894713 2.41347344202793 NA NA differentially expressed differentially expressed NA NA 7:90922457 7:90082958 ARRIBA other 105 39 high [INTRACHROMOSOMAL[chr7:0.25Mb]],duplication/5'-5' CDK14 NA STEAP2-AS1 NA Kinase NA NA NA NA -CDK14--STEAP4(26966)/EIF4A1P13(114931) BS_V3Z3DB4N 5.4000049894713 -0.61573888532462 NA -0.0699256872624616 differentially expressed no change NA no change 7:90917724 7:88333857 ARRIBA frameshift 5 0 medium [],duplication CDK14 NA STEAP4 EIF4A1P13 Kinase NA NA NA NA -CDK14--TMBIM7P BS_RB2S0KDF -0.0640737049510798 0.00938885503475301 NA NA no change no change NA NA 7:91118208 7:92433244 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:1.20Mb]],deletion/5'-5' CDK14 NA TMBIM7P NA Kinase NA NA NA NA -CDK2AP2--EHBP1L1 BS_KBT7MQ6H -0.315327701928447 1.97039746331369 NA NA no change no change NA NA 11:67506888 11:65584605 ARRIBA frameshift 5 0 low [INTRACHROMOSOMAL[chr11:1.91Mb]],deletion/5'-5' CDK2AP2 NA EHBP1L1 NA NA NA NA NA NA -CDK6--AC004893.2 BS_4QW2S1Q8 11.8161021448603 NA NA NA differentially expressed NA NA NA 7:92774696 7:99047655 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:6.18Mb]],inversion CDK6 NA AC004893.2 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA -CDK6--SEM1 BS_4QW2S1Q8 11.8161021448603 NA NA NA differentially expressed NA NA NA 7:92774696 7:96653722 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr7:3.65Mb]],inversion/5'-5' CDK6 NA SEM1 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA -CDK8--SNORA68(51998)/uc_338(54614) BS_TA9WP4TH 1.21114506760244 18.1375715514782 NA 5.65154891806781 no change differentially expressed NA differentially expressed 13:26254769 13:72512599 ARRIBA frameshift 4 0 high [],deletion CDK8 NA SNORA68 uc_338 Kinase, Kinase NA NA NA NA -CDK8--SNORA9(94638)/RPL21P110(22245) BS_TA9WP4TH 1.21114506760244 12.1634113944315 NA 1.44956750828289 no change differentially expressed NA no change 13:26254769 13:72681448 ARRIBA frameshift 3 0 high [],deletion CDK8 NA SNORA9 RPL21P110 Kinase, Kinase NA NA NA NA -CDKL4--CDKL4(16644)/MAP4K3(3034) BS_7G42J2SK 11.7311792088127 11.7311792088127 NA 2.16476646301817 differentially expressed differentially expressed NA differentially expressed 2:39179187 2:39246232 ARRIBA frameshift 2 1 high [],duplication CDKL4 NA CDKL4 MAP4K3 Kinase, Kinase Kinase, Kinase NA Kinase NA -CDKN2A--AL353753.1 BS_49FQXT2E 2.7003445634787 NA NA NA differentially expressed NA NA NA 9:21994139 9:26066681 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:4.07Mb]],inversion CDKN2A NA AL353753.1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -CDKN2A--FAM71BP1(58695)/AL353753.1(69546) BS_49FQXT2E 2.7003445634787 167.619348063179 NA NA differentially expressed differentially expressed NA NA 9:21994139 9:25997129 ARRIBA frameshift 2 0 high [],inversion CDKN2A NA FAM71BP1 AL353753.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -CDKN2B-AS1--CDKN2B-AS1 BS_044XZ8ST 8.87634234219966 8.87634234219966 NA NA differentially expressed differentially expressed NA NA 9:22049228 9:22029433 ARRIBA other 5 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.13Mb]],duplication/non-canonical_splicing CDKN2B-AS1 NA CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1--CDKN2B-AS1 BS_P4NX9MPA 9.62062948990027 9.62062948990027 NA NA differentially expressed differentially expressed NA NA 9:22097364 9:22029433 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.13Mb]],duplication/non-canonical_splicing CDKN2B-AS1 NA CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_02NZT8CE 9.57130964443926 9.57130964443926 NA NA differentially expressed differentially expressed NA NA 9:22127402 9:22029433 ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_1NPD7PVG 14.1467699545633 14.1467699545633 NA NA differentially expressed differentially expressed NA NA 9:22127402 9:22029433 ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_3G3KWY18 9.06196131275294 9.06196131275294 NA NA differentially expressed differentially expressed NA NA 9:22127402 9:22112320 ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_7P83Z28P 10.1684321755328 10.1684321755328 NA NA differentially expressed differentially expressed NA NA 9:22127402 9:22112320 ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_8F9BDWY4 8.20780574859082 8.20780574859082 NA NA differentially expressed differentially expressed NA NA 9:22127402 9:22046751 ARRIBA other 2 0 medium [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_9DFBHHB5 8.98289862734667 8.98289862734667 NA NA differentially expressed differentially expressed NA NA 9:22127402 9:22029433 ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_FAQQ0GCQ 17.5438296606013 17.5438296606013 NA NA differentially expressed differentially expressed NA NA 9:22127402 9:22046751 ARRIBA other 3 0 medium [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_FJWZ3M7V 9.52170635003463 9.52170635003463 NA NA differentially expressed differentially expressed NA NA 9:22127402 9:22120200 ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_K17VQECG 11.6102675390153 11.6102675390153 NA NA differentially expressed differentially expressed NA NA 9:22127402 9:22046751 ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_M4NVX721 12.2860782223934 12.2860782223934 NA NA differentially expressed differentially expressed NA NA 9:22127402 9:22046751 ARRIBA other 4 0 medium [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_TDEFAPNH 18.8869116644816 18.8869116644816 NA NA differentially expressed differentially expressed NA NA 9:22127402 9:22112320 ARRIBA other 2 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_TGW6HC4X 9.26932142377559 9.26932142377559 NA NA differentially expressed differentially expressed NA NA 9:22127402 9:22046317 ARRIBA other 2 0 medium [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6466)/AL157937.1(76427)--CDKN2B-AS1 BS_47SJZ3PH 16.1624814625399 16.1624814625399 NA NA differentially expressed differentially expressed NA NA 9:22127563 9:22046751 ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6466)/AL157937.1(76427)--CDKN2B-AS1 BS_A1VEGWTR 11.8794058100476 11.8794058100476 NA NA differentially expressed differentially expressed NA NA 9:22127563 9:22046751 ARRIBA other 2 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6466)/AL157937.1(76427)--CDKN2B-AS1 BS_EXGBH3TD 14.1758304179434 14.1758304179434 NA NA differentially expressed differentially expressed NA NA 9:22127563 9:22096372 ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6466)/AL157937.1(76427)--CDKN2B-AS1 BS_NRPG5K4K 6.51756137733345 6.51756137733345 NA NA differentially expressed differentially expressed NA NA 9:22127563 9:22046751 ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDKN2B-AS1(6466)/AL157937.1(76427)--CDKN2B-AS1 BS_V3Z3DB4N 11.8033617104622 11.8033617104622 NA NA differentially expressed differentially expressed NA NA 9:22127563 9:22046751 ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA -CDYL2--AC092131.1(108691)/AC009101.2(26987) BS_W4DB5RP1 1.13384097621952 NA NA NA no change NA NA NA 16:80684538 16:64708938 ARRIBA frameshift 2 0 high [],inversion CDYL2 NA AC092131.1 AC009101.2 NA NA NA NA NA -CEBPG--RHPN2 BS_6VPKXXMR 1.07377098901286 2.30386485044989 NA NA no change differentially expressed NA NA 19:33373895 19:33044364 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr19:0.31Mb]],inversion CEBPG NA RHPN2 NA TranscriptionFactor NA NA NA NA -CEBPG--RHPN2 BS_M85CXHDV 0.256695298124013 2.77360479871189 NA NA no change differentially expressed NA NA 19:33373895 19:33044364 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr19:0.31Mb]],inversion CEBPG NA RHPN2 NA TranscriptionFactor NA NA NA NA -CECR2--RAD51B BS_ZVZDDW2G -0.577042686786537 0.0515906352414793 NA NA no change no change NA NA 22:17369909 14:68695743 ARRIBA frameshift 17 0 high [INTERCHROMOSOMAL[chr22--chr14]],translocation/5'-5' CECR2 NA RAD51B NA NA CosmicCensus, Oncogene NA NA NA -CECR2--SNAP29 BS_49BQS7Z6 0.68755970827205 1.68345818139624 NA NA no change no change NA NA 22:17552142 22:20887719 ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr22:3.30Mb]],inversion/3'-3' CECR2 NA SNAP29 NA NA NA NA NA NA -CELF1--ZNF202(8545)/OR6X1(3268) BS_SXCZ3CXN 0.463535807440263 -0.251162638208379 NA 13.9669456480997 no change no change NA differentially expressed 11:47565274 11:123750220 ARRIBA other 2 0 low [],duplication CELF1 NA ZNF202 OR6X1 NA TranscriptionFactor NA NA NA -CENPBD1P1--A1BG BS_HF3RNN2T 2.40442423235256 -2.80793217744364 NA NA differentially expressed differentially expressed NA NA 19:58575588 19:58345931 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr19:0.22Mb]],duplication/5'-5' CENPBD1P1 NA A1BG NA NA NA NA NA NA -CENPBD1P1--AC020915.1 BS_HF3RNN2T 2.40442423235256 NA NA NA differentially expressed NA NA NA 19:58575588 19:58306088 ARRIBA other 7 0 high [INTRACHROMOSOMAL[chr19:0.26Mb]],duplication CENPBD1P1 NA AC020915.1 NA NA NA NA NA NA -CENPBD1P1--AC020915.2 BS_HF3RNN2T 2.40442423235256 27.8864772484829 NA NA differentially expressed differentially expressed NA NA 19:58575588 19:58306088 ARRIBA other 7 0 high [INTRACHROMOSOMAL[chr19:0.26Mb]],duplication CENPBD1P1 NA AC020915.2 NA NA NA NA NA NA -CENPBD1P1--AC020915.6 BS_HF3RNN2T 2.40442423235256 NA NA NA differentially expressed NA NA NA 19:58575588 19:58306088 ARRIBA other 7 0 high [INTRACHROMOSOMAL[chr19:0.26Mb]],duplication CENPBD1P1 NA AC020915.6 NA NA NA NA NA NA -CENPBD1P1--ZBTB45 BS_HF3RNN2T 2.40442423235256 2.85507380987494 NA NA differentially expressed differentially expressed NA NA 19:58586214 19:58525479 ARRIBA other 9 0 medium [INTRACHROMOSOMAL[chr19:0.03Mb],LOCAL_INVERSION:+:-:[34592]],duplication/5'-5' CENPBD1P1 NA ZBTB45 NA NA TranscriptionFactor NA NA NA -CENPF--RD3(21423)/AC105275.1(21423)/SLC30A1(57228) BS_WKESC3XN 3.50109377747469 -0.273584838250086 NA NA differentially expressed no change NA NA 1:214641812 1:211514340 ARRIBA frameshift 25 2 medium [],inversion CENPF NA RD3 AC105275.1 Oncogene NA NA NA NA -CENPF--RD3(21563)/AC105275.1(21563)/SLC30A1(57088) BS_QWTE1CWR 2.78552101024273 -0.347712287640732 NA NA differentially expressed no change NA NA 1:214641998 1:211514480 ARRIBA frameshift 6 0 low [],inversion CENPF NA RD3 AC105275.1 Oncogene NA NA NA NA -CEP135--CCDC14 BS_BPWEFR89 3.48194234735243 1.79176823030917 NA NA differentially expressed no change NA NA 4:55968673 3:123951431 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr4--chr3]],translocation CEP135 NA CCDC14 NA NA NA NA NA NA -CEP170--AKT3 BS_H4B5Y6S0 3.23979637124915 4.5231746741906 NA NA differentially expressed differentially expressed NA NA 1:243255040 1:243512426 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr1:0.23Mb]],duplication CEP170 NA AKT3 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -CEP170--AKT3 BS_H4B5Y6S0 3.23979637124915 4.5231746741906 NA NA differentially expressed differentially expressed NA NA 1:243253102 1:243512426 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr1:0.23Mb]],duplication CEP170 NA AKT3 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -CEP170--AKT3 BS_H4B5Y6S0 3.23979637124915 4.5231746741906 NA NA differentially expressed differentially expressed NA NA 1:243255047 1:243512426 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr1:0.23Mb]],duplication CEP170 NA AKT3 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -CEP192--SEH1L BS_7ZV3DPGT 1.24430024550555 1.24597840651377 NA NA no change no change NA NA 18:13019206 18:12971153 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr18:0.00Mb],LOCAL_REARRANGEMENT:+:[3826]],duplication CEP192 NA SEH1L NA NA NA NA NA NA -CERS3--LINS1 BS_MKM0EEN1 2.74113071316512 NA NA NA differentially expressed NA NA NA 15:100469378 15:100565265 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:-:[14374]],duplication CERS3 NA LINS1 NA NA NA NA NA NA -CERS3--LINS1 BS_MKM0EEN1 2.74113071316512 NA NA NA differentially expressed NA NA NA 15:100490817 15:100565265 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:-:[14374]],duplication CERS3 NA LINS1 NA NA NA NA NA NA -CERS3--LINS1 BS_MKM0EEN1 2.74113071316512 NA NA NA differentially expressed NA NA NA 15:100544903 15:100565265 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:-:[14374]],duplication CERS3 NA LINS1 NA NA NA NA NA NA -CERS3--LINS1 BS_W4HGV6E7 0.0310875696525605 NA NA NA no change NA NA NA 15:100544903 15:100565265 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:-:[14374]],duplication CERS3 NA LINS1 NA NA NA NA NA NA -CERS3--LINS1 BS_W4HGV6E7 0.0310875696525605 NA NA NA no change NA NA NA 15:100469378 15:100565265 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:-:[14374]],duplication CERS3 NA LINS1 NA NA NA NA NA NA -CERS3--LINS1 BS_W4HGV6E7 0.0310875696525605 NA NA NA no change NA NA NA 15:100490817 15:100565265 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:-:[14374]],duplication CERS3 NA LINS1 NA NA NA NA NA NA -CERS3--LINS1 BS_W4HGV6E7 0.0310875696525605 NA NA NA no change NA NA NA 15:100521667 15:100565265 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:-:[14374]],duplication CERS3 NA LINS1 NA NA NA NA NA NA -CES5A(120117)/AC007495.1(16839)--AC007495.1 BS_ZR96A4FH -0.805227108632349 NA NA NA no change NA NA NA 16:56076148 16:56162106 ARRIBA other 3 0 medium [],duplication CES5A AC007495.1 AC007495.1 NA NA NA NA NA NA -CFAP221--CFAP221 BS_G63HYD6N 0.83239009865982 0.83239009865982 NA NA no change no change NA NA 2:119630901 2:119604672 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.12Mb]],duplication/non-canonical_splicing CFAP221 NA CFAP221 NA NA NA NA NA NA -CFAP43--CFAP43 BS_07ANYSYQ 1.67513566655792 1.67513566655792 NA NA no change no change NA NA 10:104168744 10:104188410 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.10Mb]],duplication/non-canonical_splicing CFAP43 NA CFAP43 NA NA NA NA NA NA -CFAP43--CFAP43 BS_NGHK9RZP 3.37750017041289 3.37750017041289 NA NA differentially expressed differentially expressed NA NA 10:104168744 10:104188410 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.10Mb]],duplication/non-canonical_splicing CFAP43 NA CFAP43 NA NA NA NA NA NA -CFAP43--CFAP43 BS_SAA624A4 1.8318884000114 1.8318884000114 NA NA no change no change NA NA 10:104147891 10:104162403 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.10Mb]],duplication/non-canonical_splicing CFAP43 NA CFAP43 NA NA NA NA NA NA -CFAP44--SPICE1 BS_1EBQ3T20 0.60774434770325 5.39252303541442 NA NA no change differentially expressed NA NA 3:113433565 3:113506605 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA -CFAP44--SPICE1 BS_1EBQ3T20 0.60774434770325 5.39252303541442 NA NA no change differentially expressed NA NA 3:113294687 3:113506605 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA -CFAP44--SPICE1 BS_1EBQ3T20 0.60774434770325 5.39252303541442 NA NA no change differentially expressed NA NA 3:113326445 3:113506605 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA -CFAP44--SPICE1 BS_1EBQ3T20 0.60774434770325 5.39252303541442 NA NA no change differentially expressed NA NA 3:113399906 3:113506605 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA -CFAP44--SPICE1 BS_1EBQ3T20 0.60774434770325 5.39252303541442 NA NA no change differentially expressed NA NA 3:113395750 3:113494142 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA -CFAP44--SPICE1 BS_53M8PP88 2.0797345381259 5.90887117496202 NA NA differentially expressed differentially expressed NA NA 3:113433565 3:113506605 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA -CFAP44--SPICE1 BS_8ZD6J47V -0.645746492145625 4.17536429411792 NA NA no change differentially expressed NA NA 3:113395750 3:113506605 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA -CFAP44--SPICE1 BS_8ZD6J47V -0.645746492145625 4.17536429411792 NA NA no change differentially expressed NA NA 3:113441453 3:113506605 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA -CFAP44--SPICE1 BS_9NJHQE9F 1.0971118693683 4.91284570801336 NA NA no change differentially expressed NA NA 3:113395750 3:113494142 ARRIBA in-frame 2 0 high [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA -CFAP44--SPICE1 BS_JTMXAMB7 -0.663466137851423 2.97499067029437 NA NA no change differentially expressed NA NA 3:113395750 3:113494142 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA -CFAP44--SPICE1 BS_V72H4RQS -0.284146360801447 4.14080354355626 NA NA no change differentially expressed NA NA 3:113395750 3:113494142 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA -CFAP46--CFAP46 BS_3X9WMZGJ 3.08173285579132 3.08173285579132 NA NA differentially expressed differentially expressed NA NA 10:132892333 10:132916682 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/non-canonical_splicing CFAP46 NA CFAP46 NA NA NA NA NA NA -CFAP46--CFAP46 BS_BJDNWMJH 2.97584254898019 2.97584254898019 NA NA differentially expressed differentially expressed NA NA 10:132885103 10:132916682 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/non-canonical_splicing CFAP46 NA CFAP46 NA NA NA NA NA NA -CFAP46--CFAP46 BS_KX6J8TRK 1.64449999961385 1.64449999961385 NA NA no change no change NA NA 10:132892333 10:132916682 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/non-canonical_splicing CFAP46 NA CFAP46 NA NA NA NA NA NA -CFAP46--CFAP46 BS_P0W5VJH4 0.749829698876137 0.749829698876137 NA NA no change no change NA NA 10:132892333 10:132916682 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/non-canonical_splicing CFAP46 NA CFAP46 NA NA NA NA NA NA -CFAP46--CFAP46 BS_P78SMRBS 3.37370594822744 3.37370594822744 NA NA differentially expressed differentially expressed NA NA 10:132846057 10:132851305 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/non-canonical_splicing CFAP46 NA CFAP46 NA NA NA NA NA NA -CFAP46--CFAP46 BS_QSTAVWGE 4.50556289947771 4.50556289947771 NA NA differentially expressed differentially expressed NA NA 10:132846057 10:132851305 ARRIBA in-frame 18 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/non-canonical_splicing CFAP46 NA CFAP46 NA NA NA NA NA NA -CFAP46--CFAP46 BS_Z85M2R3N 5.11191257382728 5.11191257382728 NA NA differentially expressed differentially expressed NA NA 10:132846057 10:132851305 ARRIBA in-frame 14 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/non-canonical_splicing CFAP46 NA CFAP46 NA NA NA NA NA NA -CFAP47--CFAP47 BS_13CGKADW 1.38889650343337 1.38889650343337 NA NA no change no change NA NA X:36285726 X:36228628 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_3F4FQJMR 5.85199123432851 5.85199123432851 NA NA differentially expressed differentially expressed NA NA X:36205110 X:36179345 ARRIBA frameshift 28 6 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_4FZS7TX4 3.63485825882392 3.63485825882392 NA NA differentially expressed differentially expressed NA NA X:36205110 X:36179345 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_4T0HPZDC 1.26754560222124 1.26754560222124 NA NA no change no change NA NA X:36205110 X:36179345 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_74FS6GMW 1.90603841289724 1.90603841289724 NA NA no change no change NA NA X:35956196 X:35941283 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_8RHPJ740 3.26709890112031 3.26709890112031 NA NA differentially expressed differentially expressed NA NA X:36205110 X:36179345 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_9V633J1X 1.2386873412575 1.2386873412575 NA NA no change no change NA NA X:36085538 X:36065643 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_BJDNWMJH 3.21106568603338 3.21106568603338 NA NA differentially expressed differentially expressed NA NA X:36205110 X:36065643 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_C80S5N37 3.72095588492517 3.72095588492517 NA NA differentially expressed differentially expressed NA NA X:36205110 X:36179345 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_F9WKPDFG 3.36408880433923 3.36408880433923 NA NA differentially expressed differentially expressed NA NA X:36014912 X:35966565 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_HC44ZA0V 6.25424833498955 6.25424833498955 NA NA differentially expressed differentially expressed NA NA X:36205110 X:36179345 ARRIBA frameshift 24 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_KBT7MQ6H 2.63865857920666 2.63865857920666 NA NA differentially expressed differentially expressed NA NA X:36085538 X:36065643 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_KK5C8VCK 1.98969015697597 1.98969015697597 NA NA no change no change NA NA X:35956196 X:35941283 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_MKP2Y41Z 2.21480959894751 2.21480959894751 NA NA differentially expressed differentially expressed NA NA X:36073364 X:35989319 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_R634WKN7 1.06713044480748 1.06713044480748 NA NA no change no change NA NA X:36205110 X:36179345 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_SDCNP7MW 5.28655281454108 5.28655281454108 NA NA differentially expressed differentially expressed NA NA X:36205110 X:36179345 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_SFKZSJN1 0.904554584036902 0.904554584036902 NA NA no change no change NA NA X:36285726 X:36228628 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_TK84K675 1.06066410666829 1.06066410666829 NA NA no change no change NA NA X:36205110 X:36179345 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_WFD0GE5X 4.6857706118233 4.6857706118233 NA NA differentially expressed differentially expressed NA NA X:36014912 X:35966565 ARRIBA frameshift 16 2 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_WH8G4VFB 2.83728629440549 2.83728629440549 NA NA differentially expressed differentially expressed NA NA X:36205110 X:36179345 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--CFAP47 BS_WRQHPSXQ 1.85053060696563 1.85053060696563 NA NA no change no change NA NA X:36205110 X:36065643 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA -CFAP47--SH3KBP1 BS_W80TJC27 2.6734525611927 -0.382944079235092 NA NA differentially expressed no change NA NA X:35941398 X:19584720 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chrX:16.03Mb]],duplication/5'-5' CFAP47 NA SH3KBP1 NA NA NA NA NA NA -CFAP54--CFAP54 BS_0C7VZC0A 3.73639840321457 3.73639840321457 NA NA differentially expressed differentially expressed NA NA 12:96792499 12:96647875 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.39Mb]],duplication/non-canonical_splicing CFAP54 NA CFAP54 NA NA NA NA NA NA -CFAP54--CFAP54 BS_3XY76V8T 3.23395664874391 3.23395664874391 NA NA differentially expressed differentially expressed NA NA 12:96792499 12:96647875 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.39Mb]],duplication/non-canonical_splicing CFAP54 NA CFAP54 NA NA NA NA NA NA -CFAP97--ADGRL3 BS_S6S7SK3P 5.02881460017028 3.22480737344229 NA NA differentially expressed differentially expressed NA NA 4:185190143 4:62070109 ARRIBA frameshift 9 2 high [INTRACHROMOSOMAL[chr4:123.08Mb]],inversion CFAP97 NA ADGRL3 NA NA NA NA NA NA -CHAF1A--AC005381.1 BS_K17VQECG 3.62564386789037 NA NA NA differentially expressed NA NA NA 19:4405962 19:28475555 ARRIBA frameshift 72 7 high [INTRACHROMOSOMAL[chr19:23.99Mb]],deletion/5'-5' CHAF1A NA AC005381.1 NA NA NA NA NA NA -CHAF1A--AC005394.2 BS_K17VQECG 3.62564386789037 NA NA NA differentially expressed NA NA NA 19:4405962 19:28475555 ARRIBA frameshift 72 7 high [],deletion/5'-5' CHAF1A NA AC005394.2 NA NA NA NA NA NA -CHCHD3--AC073311.1 BS_GYA4V1RD 0.552347740588053 NA NA NA no change NA NA NA 7:132885662 7:123070115 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:9.68Mb]],deletion CHCHD3 NA AC073311.1 NA TranscriptionFactor NA NA NA NA -CHCHD3--EXOC4 BS_NJ4WPQVK 2.30590711323194 2.44628916581444 NA NA differentially expressed differentially expressed NA NA 7:132838399 7:133817325 ARRIBA in-frame 1 0 low [Klijn_CellLines,FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr7:0.17Mb]],inversion CHCHD3 NA EXOC4 NA TranscriptionFactor Oncogene NA NA NA -CHCHD3--EXOC4 BS_NJ4WPQVK 2.30590711323194 2.44628916581444 NA NA differentially expressed differentially expressed NA NA 7:133024546 7:133817325 ARRIBA in-frame 1 0 low [Klijn_CellLines,FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr7:0.17Mb]],inversion CHCHD3 NA EXOC4 NA TranscriptionFactor Oncogene NA NA NA -CHD2--CELF2 BS_2SFTWNVE 1.64619522056078 1.60055381419544 NA NA no change no change NA NA 15:92921755 10:11197687 ARRIBA other 1 2 medium [INTERCHROMOSOMAL[chr15--chr10]],translocation CHD2 NA CELF2 NA CosmicCensus, Oncogene NA NA NA NA -CHD2--CHD2 BS_07ANYSYQ 1.29914556450049 1.29914556450049 NA NA no change no change NA NA 15:92974950 15:92955423 ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CHD2--CHD2 BS_7BTZQKYY 0.857255029616391 0.857255029616391 NA NA no change no change NA NA 15:92974950 15:92924321 ARRIBA frameshift 12 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CHD2--CHD2 BS_7G42J2SK 2.09796843712961 2.09796843712961 NA NA differentially expressed differentially expressed NA NA 15:92974950 15:92955423 ARRIBA in-frame 92 11 high [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CHD2--CHD2 BS_CXVJK2FY 1.68418374332316 1.68418374332316 NA NA no change no change NA NA 15:92974950 15:92955423 ARRIBA in-frame 25 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CHD2--CHD2 BS_CZ3ER8DY 1.06704761726604 1.06704761726604 NA NA no change no change NA NA 15:92974950 15:92955423 ARRIBA in-frame 10 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CHD2--CHD2 BS_CZ3NA7KV 1.44981340657417 1.44981340657417 NA NA no change no change NA NA 15:92974950 15:92955423 ARRIBA in-frame 21 4 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CHD2--CHD2 BS_EK5PCKY0 1.75479962412849 1.75479962412849 NA NA no change no change NA NA 15:92974950 15:92955423 ARRIBA in-frame 34 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CHD2--CHD2 BS_G63HYD6N 0.603943237967545 0.603943237967545 NA NA no change no change NA NA 15:92974950 15:92955423 ARRIBA in-frame 26 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CHD2--CHD2 BS_MT15SGJN 0.594229888202575 0.594229888202575 NA NA no change no change NA NA 15:92974950 15:92955423 ARRIBA in-frame 18 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CHD2--CHD2 BS_NGHK9RZP 0.94898993041925 0.94898993041925 NA NA no change no change NA NA 15:92974950 15:92955423 ARRIBA in-frame 25 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CHD2--CHD2 BS_W80TJC27 0.624514512260675 0.624514512260675 NA NA no change no change NA NA 15:92974950 15:92955423 ARRIBA in-frame 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CHD2--CHD2 BS_XF0ZX2B3 1.47162766116027 1.47162766116027 NA NA no change no change NA NA 15:92974950 15:92955423 ARRIBA in-frame 25 4 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CHD6--DLGAP4-AS1 BS_7327SDAQ 3.4075334574222 5.650910892637 NA NA differentially expressed differentially expressed NA NA 20:41533050 20:36508825 ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr20:4.83Mb]],deletion CHD6 NA DLGAP4-AS1 NA NA NA NA NA NA -CHD6--DLGAP4-AS1 BS_7327SDAQ 3.4075334574222 5.650910892637 NA NA differentially expressed differentially expressed NA NA 20:41533050 20:36508274 ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr20:4.83Mb]],deletion CHD6 NA DLGAP4-AS1 NA NA NA NA NA NA -CHD7--MYBL1 BS_AWH9757B 2.63749534606694 6.04663838138519 NA NA differentially expressed differentially expressed NA NA 8:60781430 8:66602523 ARRIBA in-frame 41 2 high [INTRACHROMOSOMAL[chr8:5.69Mb]],inversion CHD7 NA MYBL1 NA NA Oncogene, TranscriptionFactor, Oncogene NA NA NA -CHD7--MYBL1 BS_AWH9757B 2.63749534606694 6.04663838138519 NA NA differentially expressed differentially expressed NA NA 8:60743097 8:66602523 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr8:5.69Mb]],inversion CHD7 NA MYBL1 NA NA Oncogene, TranscriptionFactor, Oncogene NA NA NA -CHD7--MYBL1 BS_AWH9757B 2.63749534606694 6.04663838138519 NA NA differentially expressed differentially expressed NA NA 8:60781050 8:66602523 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:5.69Mb]],inversion CHD7 NA MYBL1 NA NA Oncogene, TranscriptionFactor, Oncogene NA NA NA -CHD7--VGLL3 BS_N5B2CZMH 1.90968903903954 12.2218264425608 NA NA no change differentially expressed NA NA 8:60743097 3:86978802 ARRIBA in-frame 25 7 high [INTERCHROMOSOMAL[chr8--chr3]],translocation CHD7 NA VGLL3 NA NA NA NA NA NA -CHD7--VGLL3 BS_N5B2CZMH 1.90968903903954 12.2218264425608 NA NA no change differentially expressed NA NA 8:60743097 3:86978643 ARRIBA in-frame 6 3 medium [INTERCHROMOSOMAL[chr8--chr3]],translocation CHD7 NA VGLL3 NA NA NA NA NA NA -CHD9--PHKB BS_VJ2S5DVS 5.64409369538003 2.97696130140132 NA NA differentially expressed differentially expressed NA NA 16:53157541 16:47587668 ARRIBA in-frame 26 1 high [INTRACHROMOSOMAL[chr16:5.35Mb]],duplication CHD9 NA PHKB NA Oncogene NA NA NA NA -CHD9--VGLL3 BS_VJAC9H58 4.67696665531553 11.3279670851281 NA NA differentially expressed differentially expressed NA NA 16:53157541 3:86978802 ARRIBA in-frame 48 4 high [INTERCHROMOSOMAL[chr16--chr3]],translocation CHD9 NA VGLL3 NA Oncogene NA NA NA NA -CHD9--VGLL3 BS_VJAC9H58 4.67696665531553 11.3279670851281 NA NA differentially expressed differentially expressed NA NA 16:53157541 3:86978643 ARRIBA in-frame 19 1 high [INTERCHROMOSOMAL[chr16--chr3]],translocation CHD9 NA VGLL3 NA Oncogene NA NA NA NA -CHFR--CHFR BS_ZXYDSBM9 0.33442574352158 0.33442574352158 NA NA no change no change NA NA 12:132844027 12:132861634 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing CHFR NA CHFR NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA -CHFR--OR4A41P(16898)/OR4A42P(2478) BS_7327SDAQ -0.0148133495985387 -0.0817941527241854 NA -0.0563967449092603 no change no change NA no change 12:132887196 11:48607585 ARRIBA frameshift 2 0 medium [],translocation CHFR NA OR4A41P OR4A42P TumorSuppressorGene, Oncogene NA NA NA NA -CHIAP3--BLOC1S2 BS_HZ707C55 -0.106112782409936 -1.54014638996729 NA NA no change no change NA NA 1:111353565 10:100276457 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr1--chr10]],translocation CHIAP3 NA BLOC1S2 NA NA NA NA NA NA -CHIAP3--mascRNA-menRNA(4784)/AP000769.1(4876) BS_P78SMRBS -0.106112782409936 NA NA NA no change NA NA NA 1:111353565 11:65450382 ARRIBA other 1 1 medium [],translocation CHIAP3 NA mascRNA-menRNA AP000769.1 NA NA NA NA NA -CHIC2--AC021220.1(64693)/RNU6-746P(9824) BS_3J85TTZM 4.1211088793363 NA NA NA differentially expressed NA NA NA 4:54048955 4:55284666 ARRIBA frameshift 6 0 high [],inversion CHIC2 NA AC021220.1 RNU6-746P CosmicCensus, Oncogene NA NA NA NA -CHIC2--PDGFRA BS_B1C6GZ84 9.66168794480973 8.58831659116166 NA NA differentially expressed differentially expressed NA NA 4:54013837 4:54295125 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr4:0.16Mb]],inversion CHIC2 NA PDGFRA NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -CHIC2--PDGFRA BS_B1C6GZ84 9.66168794480973 8.58831659116166 NA NA differentially expressed differentially expressed NA NA 4:54048955 4:54295125 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr4:0.16Mb]],inversion CHIC2 NA PDGFRA NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -CHIC2--PDGFRA BS_B1C6GZ84 9.66168794480973 8.58831659116166 NA NA differentially expressed differentially expressed NA NA 4:54064182 4:54295125 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr4:0.16Mb]],inversion CHIC2 NA PDGFRA NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -CHIC2--PDGFRA BS_B1C6GZ84 9.66168794480973 8.58831659116166 NA NA differentially expressed differentially expressed NA NA 4:54049039 4:54295125 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.16Mb]],inversion CHIC2 NA PDGFRA NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -CHKA--SLC35E1 BS_W80TJC27 -2.36577048203146 0.142523526598732 NA NA differentially expressed no change NA NA 11:68056446 19:16553641 ARRIBA other 3 0 low [INTERCHROMOSOMAL[chr11--chr19]],translocation CHKA NA SLC35E1 NA Oncogene, Kinase NA NA NA NA -CHKA--SPTY2D1 BS_CZ3NA7KV -2.58159127119654 4.18103216508096 NA NA differentially expressed differentially expressed NA NA 11:68081404 11:18616989 ARRIBA in-frame 6 3 high [INTRACHROMOSOMAL[chr11:49.42Mb]],deletion CHKA NA SPTY2D1 NA Oncogene, Kinase NA NA NA NA -CHKA--SPTY2D1 BS_CZ3NA7KV -2.58159127119654 4.18103216508096 NA NA differentially expressed differentially expressed NA NA 11:68097019 11:18616989 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:49.42Mb]],deletion CHKA NA SPTY2D1 NA Oncogene, Kinase NA NA NA NA -CHM--CHM BS_4W1DBAN4 -0.136528411069207 -0.136528411069207 NA NA no change no change NA NA X:85894188 X:85964052 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.19Mb]],duplication/non-canonical_splicing CHM NA CHM NA NA NA NA NA NA -CHM--OR4A42P(7510)/OR4A44P(9036) BS_4B0BAVTX -0.852332105540147 26.6257049574809 NA 68.295362533555 no change differentially expressed NA differentially expressed X:85911261 11:48618510 ARRIBA frameshift 3 0 high [],translocation CHM NA OR4A42P OR4A44P NA NA NA NA NA -CHMP3--AL353746.1 BS_D144EJRQ 0.535786150083135 NA NA NA no change NA NA NA 2:86526566 9:27941031 ARRIBA other 4 0 low [INTERCHROMOSOMAL[chr2--chr9]],translocation CHMP3 NA AL353746.1 NA NA NA NA NA NA -CHMP3--AL353746.1 BS_VMEX27TN -1.05497119940818 NA NA NA no change NA NA NA 2:86526566 9:27941031 ARRIBA other 5 0 low [INTERCHROMOSOMAL[chr2--chr9]],translocation CHMP3 NA AL353746.1 NA NA NA NA NA NA -CHRM2--TBXAS1 BS_052PZFMK 0.668326210409717 1.11061837157606 NA NA no change no change NA NA 7:136869418 7:140007091 ARRIBA other 2 0 high [INTRACHROMOSOMAL[chr7:2.76Mb]],deletion CHRM2 NA TBXAS1 NA NA NA NA NA NA -CHST14--PAWR BS_A3QZB9Y2 5.95088721664141 2.26735144856832 NA NA differentially expressed differentially expressed NA NA 15:40472470 12:79678820 ARRIBA frameshift 14 0 medium [INTERCHROMOSOMAL[chr15--chr12]],translocation/5'-5' CHST14 NA PAWR NA NA TumorSuppressorGene, Oncogene NA NA NA -CHST9--CHST9 BS_MKM0EEN1 2.50030855149887 2.50030855149887 NA NA differentially expressed differentially expressed NA NA 18:27123887 18:27142905 ARRIBA frameshift 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr18:0.28Mb]],duplication CHST9 NA CHST9 NA NA NA NA NA NA -CHTF8--TANGO6 BS_11WY983P 2.15118196263457 9.46865264229462 NA NA differentially expressed differentially expressed NA NA 16:69121053 16:69040308 ARRIBA in-frame 9 1 high [INTRACHROMOSOMAL[chr16:0.03Mb],LOCAL_INVERSION:-:+:[32830]],inversion CHTF8 NA TANGO6 NA NA NA NA NA NA -CHTF8--TANGO6 BS_11WY983P 2.15118196263457 9.46865264229462 NA NA differentially expressed differentially expressed NA NA 16:69121436 16:69040308 ARRIBA frameshift 11 0 medium [INTRACHROMOSOMAL[chr16:0.03Mb],LOCAL_INVERSION:-:+:[32830]],inversion CHTF8 NA TANGO6 NA NA NA NA NA NA -CHTF8--TANGO6 BS_11WY983P 2.15118196263457 9.46865264229462 NA NA differentially expressed differentially expressed NA NA 16:69132484 16:69040308 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr16:0.03Mb],LOCAL_INVERSION:-:+:[32830]],inversion CHTF8 NA TANGO6 NA NA NA NA NA NA -CHTF8--TANGO6 BS_11WY983P 2.15118196263457 9.46865264229462 NA NA differentially expressed differentially expressed NA NA 16:69132089 16:69040308 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr16:0.03Mb],LOCAL_INVERSION:-:+:[32830]],inversion CHTF8 NA TANGO6 NA NA NA NA NA NA -CIB2--AC020912.1(8436)/LINC01791(11099) BS_AZN38B7V 0.331469435740618 NA NA NA no change NA NA NA 15:78131165 19:31156417 ARRIBA frameshift 2 0 medium [],translocation CIB2 NA AC020912.1 LINC01791 NA NA NA NA NA -CIB2--LINC01791 BS_AZN38B7V 0.331469435740618 NA NA NA no change NA NA NA 15:78109235 19:31176384 ARRIBA frameshift 6 0 medium [INTERCHROMOSOMAL[chr15--chr19]],translocation/5'-5' CIB2 NA LINC01791 NA NA NA NA NA NA -CIB2--TMED3 BS_AZN38B7V 0.331469435740618 1.6107701029237 NA NA no change no change NA NA 15:78109235 15:79364606 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr15:1.18Mb]],inversion CIB2 NA TMED3 NA NA NA NA NA NA -CIC--AC011466.3 BS_DRY58DTF 0.396871679533931 NA NA NA no change NA NA NA 19:42294903 19:48127031 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr19:5.82Mb]],deletion CIC NA AC011466.3 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -CIPC--CACNG2 BS_ZVZDDW2G -2.26634226091891 -1.43349298601631 NA NA differentially expressed no change NA NA 14:77098361 22:36566493 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr14--chr22]],translocation CIPC NA CACNG2 NA NA NA NA NA NA -CIT--CIT BS_2XD3MNKD 0.123958519432002 0.123958519432002 NA NA no change no change NA NA 12:119752050 12:119761055 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.19Mb]],duplication/non-canonical_splicing CIT NA CIT NA Kinase Kinase NA NA NA -CIT--CIT BS_HCP5C912 0.636760518914325 0.636760518914325 NA NA no change no change NA NA 12:119752050 12:119761055 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.19Mb]],duplication/non-canonical_splicing CIT NA CIT NA Kinase Kinase NA NA NA -CKAP5--AC099842.1(287888)/AC015771.1(54032) BS_MN5XVP5A 0.47903535653063 NA NA NA no change NA NA NA 11:46809400 11:24181445 ARRIBA frameshift 3 0 medium [],inversion CKAP5 NA AC099842.1 AC015771.1 NA NA NA NA NA -CKAP5--AC099842.1(287888)/AC015771.1(54032) BS_RCCN63K6 1.15702991386042 NA NA NA no change NA NA NA 11:46809400 11:24181445 ARRIBA frameshift 5 0 high [],inversion CKAP5 NA AC099842.1 AC015771.1 NA NA NA NA NA -CKAP5--AC099842.1(315770)/AC015771.1(26150) BS_RCCN63K6 1.15702991386042 NA NA NA no change NA NA NA 11:46809400 11:24209327 ARRIBA frameshift 3 0 high [],inversion CKAP5 NA AC099842.1 AC015771.1 NA NA NA NA NA -CLASP1--PNO1 BS_RRAEQZ97 1.72815451304962 0.719316588878447 NA NA no change no change NA NA 2:121605701 2:68174735 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:53.16Mb]],inversion CLASP1 NA PNO1 NA NA NA NA NA NA -CLASP2--CLASP2 BS_CZ3NA7KV -0.0737536856276794 -0.0737536856276794 NA NA no change no change NA NA 3:33570727 3:33592496 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.22Mb]],duplication/non-canonical_splicing CLASP2 NA CLASP2 NA NA NA NA NA NA -CLCC1--EBF4 BS_5P3CZQV8 0.115921382969445 -0.983314773107714 NA NA no change no change NA NA 1:108951640 20:2749625 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr1--chr20]],translocation CLCC1 NA EBF4 NA NA TranscriptionFactor NA NA NA -CLCF1--RELA BS_G63HYD6N 1.19800187780572 4.95228108716172 NA NA no change differentially expressed NA NA 11:67368534 11:65662351 ARRIBA other 10 0 medium [INTRACHROMOSOMAL[chr11:1.70Mb]],deletion CLCF1 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA -CLCN3--CLCN3 BS_1EBQ3T20 0.26846277683449 0.26846277683449 NA NA no change no change NA NA 4:169713295 4:169635913 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr4:0.11Mb]],duplication/non-canonical_splicing CLCN3 NA CLCN3 NA NA NA NA NA NA -CLEC16A(7256)/AC007220.1(6732)--CLEC16A BS_N6NE6B3W 2.74889019737668 2.74889019737668 NA NA differentially expressed differentially expressed NA NA 16:11189445 16:11020193 ARRIBA other 4 0 medium [],duplication CLEC16A AC007220.1 CLEC16A NA NA NA NA NA NA -CLEC4A--NECAP1 BS_2WPQ8YCW -0.56910156457694 -0.799285565532484 NA NA no change no change NA NA 12:8136903 12:8091769 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[25773]],duplication CLEC4A NA NECAP1 NA NA NA NA NA NA -CLIC4--ETFBKMT BS_JGPR9SR2 2.41639087392659 NA NA NA differentially expressed NA NA NA 1:24833178 12:31661841 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr1--chr12]],translocation/3'-3' CLIC4 NA ETFBKMT NA Oncogene NA NA NA NA -CLIP1--CLIP1 BS_9NZ2D6AD 1.05742775258834 1.05742775258834 NA NA no change no change NA NA 12:122346874 12:122354556 ARRIBA other 9 0 high [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.15Mb]],inversion/3'-3' CLIP1 NA CLIP1 NA CosmicCensus CosmicCensus NA NA NA -CLIP1--CLIP1 BS_9NZ2D6AD 1.05742775258834 1.05742775258834 NA NA no change no change NA NA 12:122330346 12:122327853 ARRIBA other 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.15Mb]],inversion/5'-5' CLIP1 NA CLIP1 NA CosmicCensus CosmicCensus NA NA NA -CLIP1--ROS1 BS_CXVGG342 0.956695457881605 6.27527441783892 NA NA no change differentially expressed NA NA 12:122288489 6:117320030 ARRIBA in-frame 10 0 medium [ChimerKB,Cosmic,INTERCHROMOSOMAL[chr12--chr6]],translocation CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA -CLIP1--ROS1 BS_D8N31T39 0.275177016357751 3.13279079831004 NA NA no change differentially expressed NA NA 12:122288489 6:117320030 ARRIBA in-frame 19 1 high [ChimerKB,Cosmic,INTERCHROMOSOMAL[chr12--chr6]],translocation CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA -CLIP1--ROS1 BS_M7HCF7DW 0.701996602600803 4.94975375488994 NA NA no change differentially expressed NA NA 12:122288489 6:117320030 ARRIBA in-frame 17 1 high [ChimerKB,Cosmic,INTERCHROMOSOMAL[chr12--chr6]],translocation CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA -CLIP1--ROS1 BS_QAG1RDXN 0.801353254299252 5.80835045271689 NA NA no change differentially expressed NA NA 12:122288489 6:117320030 ARRIBA in-frame 22 2 high [ChimerKB,Cosmic,INTERCHROMOSOMAL[chr12--chr6]],translocation CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA -CLIP4(2614)/ALK(517)--CLIP4 BS_ZV68CES9 2.08560151039334 2.08560151039334 -0.222382113157479 NA differentially expressed differentially expressed no change NA 2:29192257 2:29121374 ARRIBA other 3 0 medium [],duplication CLIP4 ALK CLIP4 NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA -CLOCK--ATP10D BS_TGS109T3 2.26899327727484 7.4572022281041 NA NA differentially expressed differentially expressed NA NA 4:55546782 4:47523012 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr4:7.83Mb]],inversion CLOCK NA ATP10D NA TranscriptionFactor NA NA NA NA -CLOCK--ATP10D BS_TGS109T3 2.26899327727484 7.4572022281041 NA NA differentially expressed differentially expressed NA NA 4:55546482 4:47523012 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr4:7.83Mb]],inversion CLOCK NA ATP10D NA TranscriptionFactor NA NA NA NA -CLPTM1L--AC109492.1(13124)/LINC01949(54572) BS_11WY983P 0.449562453977307 NA NA NA no change NA NA NA 5:1330280 5:87150836 ARRIBA frameshift 7 2 high [],inversion CLPTM1L NA AC109492.1 LINC01949 NA NA NA NA NA -CLTCL1--AC245060.2(1171)/AC245060.4(7259) BS_VXHWZJDC 1.24904172959104 NA NA NA no change NA NA NA 22:19291600 22:22295965 ARRIBA frameshift 2 0 medium [],duplication CLTCL1 NA AC245060.2 AC245060.4 CosmicCensus, Oncogene NA NA NA NA -CLU--AC124242.1(24102)/NAT1(49981) BS_X23724NJ -0.60819802989195 NA NA -0.0905332487124077 no change NA NA no change 8:27605026 8:18120496 ARRIBA frameshift 5 0 medium [],deletion CLU NA AC124242.1 NAT1 TumorSuppressorGene, Oncogene NA NA Oncogene NA -CLU--CD74 BS_HBJZR69P -0.473444506054868 3.50923536810087 NA NA no change differentially expressed NA NA 8:27604924 5:150412737 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr8--chr5]],translocation CLU NA CD74 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA NA -CLUHP3--AC004080.4(119)/HOXA9(3340) BS_6JHXXVR7 0.0946905209954093 NA NA 28.2990301000043 no change NA NA differentially expressed 16:31711012 7:27159095 ARRIBA other 4 2 medium [],translocation CLUHP3 NA AC004080.4 HOXA9 NA NA NA CosmicCensus, Oncogene, TranscriptionFactor NA -CLVS1--CLVS1 BS_G63HYD6N 1.06698143434238 1.06698143434238 NA NA no change no change NA NA 8:61376779 8:61299677 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.44Mb]],duplication/non-canonical_splicing CLVS1 NA CLVS1 NA NA NA NA NA NA -CLVS1--CLVS1 BS_KEA474HN -0.829727749587428 -0.829727749587428 NA NA no change no change NA NA 8:61376779 8:61299677 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.44Mb]],duplication/non-canonical_splicing CLVS1 NA CLVS1 NA NA NA NA NA NA -CLVS1--CLVS1 BS_N8J1DP02 -0.531889945083147 -0.531889945083147 NA NA no change no change NA NA 8:61376779 8:61299677 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.44Mb]],duplication/non-canonical_splicing CLVS1 NA CLVS1 NA NA NA NA NA NA -CLVS1--CLVS1 BS_NRPG5K4K -1.05996972206798 -1.05996972206798 NA NA no change no change NA NA 8:61376779 8:61299677 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.44Mb]],duplication/non-canonical_splicing CLVS1 NA CLVS1 NA NA NA NA NA NA -CLVS1--CLVS1 BS_SAA624A4 -0.926834628272613 -0.926834628272613 NA NA no change no change NA NA 8:61376779 8:61299677 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.44Mb]],duplication/non-canonical_splicing CLVS1 NA CLVS1 NA NA NA NA NA NA -CLVS1--CLVS1 BS_SFKZSJN1 1.25126751610067 1.25126751610067 NA NA no change no change NA NA 8:61376779 8:61299677 ARRIBA frameshift 9 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.44Mb]],duplication/non-canonical_splicing CLVS1 NA CLVS1 NA NA NA NA NA NA -CLVS1--CLVS1 BS_TNRHHYNC -0.097570753210699 -0.097570753210699 NA NA no change no change NA NA 8:61376779 8:61299677 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.44Mb]],duplication/non-canonical_splicing CLVS1 NA CLVS1 NA NA NA NA NA NA -CNBD1--AC090572.3 BS_8Z3SCKB5 45.0681729805378 NA NA NA differentially expressed NA NA NA 8:86939754 8:86764793 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr8:0.10Mb]],duplication CNBD1 NA AC090572.3 NA CosmicCensus NA NA NA NA -CNDP2--AC105243.1(14665)/AC079070.1(346786) BS_51RA1PGE 0.649219609487045 NA NA NA no change NA NA NA 18:74520591 18:73364543 ARRIBA other 8 2 medium [],duplication CNDP2 NA AC105243.1 AC079070.1 TumorSuppressorGene NA NA NA NA -CNGB3--CNGB3 BS_6T4JGBGY 82.8141719066829 82.8141719066829 NA NA differentially expressed differentially expressed NA NA 8:86643751 8:86647887 ARRIBA frameshift 63 3 high [SELFIE,INTRACHROMOSOMAL[chr8:0.19Mb]],duplication/non-canonical_splicing CNGB3 NA CNGB3 NA NA NA NA NA NA -CNIH3--MAD2L2 BS_ZXYDSBM9 -0.495390108835572 2.2174043680563 NA NA no change differentially expressed NA NA 1:224625303 1:11676141 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr1:212.74Mb]],inversion CNIH3 NA MAD2L2 NA NA NA NA NA NA -CNKSR2--XG BS_FCAKKZ20 0.299854544899117 51.4030359311995 NA NA no change differentially expressed NA NA X:21374961 X:2794535 ARRIBA in-frame 154 14 high [INTRACHROMOSOMAL[chrX:18.56Mb]],duplication CNKSR2 NA XG NA NA NA NA NA NA -CNKSR2--XG BS_FCAKKZ20 0.299854544899117 51.4030359311995 NA NA no change differentially expressed NA NA X:21374961 X:2811336 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chrX:18.56Mb]],duplication CNKSR2 NA XG NA NA NA NA NA NA -CNKSR2--XG BS_FCAKKZ20 0.299854544899117 51.4030359311995 NA NA no change differentially expressed NA NA X:21374961 X:2814364 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chrX:18.56Mb]],duplication CNKSR2 NA XG NA NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_30VC3R2Q 15.5683954758168 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 8 1 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_49FQXT2E 10.1608994950068 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 9 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_4GTESTSE 17.2065950717353 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 27 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_53GQKVEX 18.0047087489224 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 14 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_5CMGN56B 16.4715306399261 1.4287216938156 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 9 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_680K119G 11.5463570094696 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 6 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_7327SDAQ 13.1370121168966 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 11 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_775HDFNY 19.8389369615115 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 10 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_7BTZQKYY 18.0817924316764 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 94 0 high [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_8J3B6ZB6 16.3759930173916 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 8 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_9DFBHHB5 14.9042947882687 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 9 2 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_BKQZ550R 15.441216446042 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 7 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_MVW01FPB 16.0242018606465 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 18 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_MY9D8XZ1 16.9247831924459 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 6 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_NB5XWMJT 18.6129050886215 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 8 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_QB7YGKN1 13.9646067178553 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 19 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_S5P8VTN5 12.5485666269843 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 8 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_TGS109T3 17.6638712820958 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 9 1 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_TRKH2SPE 17.9587492886616 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 56 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_XGSA3GQE 16.4249154580223 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 16 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_Z6BWR941 16.3437572534762 -0.180538175592023 NA NA differentially expressed no change NA NA 2:94737981 2:94731554 ARRIBA other 14 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA -CNNM2--BMPR1B BS_NH7K4CD9 3.01790742725596 2.82795536804947 NA NA differentially expressed differentially expressed NA NA 10:102920101 4:94996040 ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr10--chr4]],translocation CNNM2 NA BMPR1B NA NA Kinase, Kinase NA NA NA -CNNM2--CNNM2 BS_044XZ8ST 2.32917205169239 2.32917205169239 NA NA differentially expressed differentially expressed NA NA 10:103076270 10:103049707 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.17Mb]],duplication/non-canonical_splicing CNNM2 NA CNNM2 NA NA NA NA NA NA -CNNM2--CNNM2 BS_HCP5C912 2.03311084368791 2.03311084368791 NA NA differentially expressed differentially expressed NA NA 10:103076270 10:103049707 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.17Mb]],duplication/non-canonical_splicing CNNM2 NA CNNM2 NA NA NA NA NA NA -CNNM2--MINDY3 BS_ZXYDSBM9 1.24575611359242 NA NA NA no change NA NA NA 10:103056964 10:15782226 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr10:87.06Mb]],inversion CNNM2 NA MINDY3 NA NA NA NA NA NA -CNNM4--MIR3681HG BS_RRAEQZ97 0.0157443121175889 NA NA NA no change NA NA NA 2:96761734 2:12200502 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr2:84.18Mb]],inversion/3'-3' CNNM4 NA MIR3681HG NA Oncogene NA NA NA NA -CNOT4--JAZF1 BS_6JHXXVR7 4.51721587708733 1.47787018651413 NA NA differentially expressed no change NA NA 7:135509889 7:28137679 ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr7:107.18Mb]],inversion/5'-5' CNOT4 NA JAZF1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -CNTFR--POLR3A BS_R5SNFB5B -2.08402524924685 4.00265244554036 NA NA differentially expressed differentially expressed NA NA 9:34568897 10:78004888 ARRIBA in-frame 8 0 high [INTERCHROMOSOMAL[chr9--chr10]],translocation CNTFR NA POLR3A NA NA NA NA NA NA -CNTN4--ARHGAP1 BS_07ANYSYQ 1.31502569864511 1.27519626900514 NA NA no change no change NA NA 3:2100639 11:46688260 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr3--chr11]],translocation CNTN4 NA ARHGAP1 NA Oncogene NA NA NA NA -CNTN4--ARHGAP1 BS_07ANYSYQ 1.31502569864511 1.27519626900514 NA NA no change no change NA NA 3:2099649 11:46688260 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr3--chr11]],translocation CNTN4 NA ARHGAP1 NA Oncogene NA NA NA NA -CNTN4--CNTN4 BS_0T17SY47 -0.194241403729027 -0.194241403729027 NA NA no change no change NA NA 3:2903005 3:2883145 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA -CNTN4--CNTN4 BS_1T19NFJ8 0.309012744183239 0.309012744183239 NA NA no change no change NA NA 3:2903005 3:2883145 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA -CNTN4--CNTN4 BS_39CGACC7 -0.280347057016724 -0.280347057016724 NA NA no change no change NA NA 3:2903005 3:2883145 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA -CNTN4--CNTN4 BS_8MA5B8Y9 1.35267444216513 1.35267444216513 NA NA no change no change NA NA 3:2903005 3:2883145 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA -CNTN4--CNTN4 BS_BKR4E30C -0.694916042376779 -0.694916042376779 NA NA no change no change NA NA 3:2903005 3:2883145 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA -CNTN4--CNTN4 BS_CREQ97QC 1.81696390385054 1.81696390385054 NA NA no change no change NA NA 3:2903005 3:2883145 ARRIBA in-frame 6 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA -CNTN4--CNTN4 BS_HCP5C912 1.31833622237883 1.31833622237883 NA NA no change no change NA NA 3:2903005 3:2883145 ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA -CNTN4--CNTN4 BS_KPT2WPHW 1.74719072916341 1.74719072916341 NA NA no change no change NA NA 3:2903005 3:2883145 ARRIBA in-frame 6 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA -CNTN4--CNTN4 BS_VPMKHW9X 2.60836383211905 2.60836383211905 NA NA differentially expressed differentially expressed NA NA 3:2903005 3:2883145 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA -CNTN4--CNTN4 BS_WCRKYV0T 1.91660250378006 1.91660250378006 NA NA no change no change NA NA 3:2903005 3:2883145 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA -CNTN4--CNTN4 BS_ZZPBANDD 0.929214656254379 0.929214656254379 NA NA no change no change NA NA 3:2903005 3:2883145 ARRIBA in-frame 2 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA -CNTN6--CNTN6 BS_JFB984RG 1.86146538857701 1.86146538857701 NA NA no change no change NA NA 3:1352451 3:1278413 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.31Mb]],duplication/non-canonical_splicing CNTN6 NA CNTN6 NA Oncogene Oncogene NA NA NA -CNTN6--CNTN6(25479)/RPL23AP38(166081) BS_7ZV3DPGT -1.04884556982007 -1.04884556982007 NA 54.3539546889969 no change no change NA differentially expressed 3:1376964 3:1429696 ARRIBA other 1 1 medium [],duplication CNTN6 NA CNTN6 RPL23AP38 Oncogene Oncogene NA NA NA -CNTNAP2--RUNX1 BS_40MP5BWR -2.82191397549039 7.9403139973535 NA NA differentially expressed differentially expressed NA NA 7:147299597 21:34887096 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr7--chr21]],translocation/3'-3' CNTNAP2 NA RUNX1 NA TumorSuppressorGene, CosmicCensus TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -CNTNAP4--CNTNAP4 BS_470DYRJQ -0.708768376253207 -0.708768376253207 NA NA no change no change NA NA 16:76449858 16:76448012 ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr16:0.28Mb]],duplication/non-canonical_splicing CNTNAP4 NA CNTNAP4 NA NA NA NA NA NA -CNTNAP4--CNTNAP4 BS_B8T7M0WV -0.574551582258901 -0.574551582258901 NA NA no change no change NA NA 16:76449858 16:76448012 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.28Mb]],duplication/non-canonical_splicing CNTNAP4 NA CNTNAP4 NA NA NA NA NA NA -CNTNAP4--CNTNAP4 BS_M15PW2N0 -2.11894030042899 -2.11894030042899 NA NA differentially expressed differentially expressed NA NA 16:76467523 16:76448012 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.28Mb]],duplication/non-canonical_splicing CNTNAP4 NA CNTNAP4 NA NA NA NA NA NA -CNTNAP4--CNTNAP4 BS_SDA4RMMG -1.28361257506714 -1.28361257506714 NA NA no change no change NA NA 16:76449858 16:76448012 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.28Mb]],duplication/non-canonical_splicing CNTNAP4 NA CNTNAP4 NA NA NA NA NA NA -CNTNAP4--CNTNAP4 BS_ZH1FBX50 -0.896219418690484 -0.896219418690484 NA NA no change no change NA NA 16:76467523 16:76448012 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.28Mb]],duplication/non-canonical_splicing CNTNAP4 NA CNTNAP4 NA NA NA NA NA NA -CNTNAP5--CNTNAP5 BS_N6NE6B3W 6.53772789367749 6.53772789367749 NA NA differentially expressed differentially expressed NA NA 2:124798320 2:124772799 ARRIBA in-frame 19 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.89Mb]],duplication/non-canonical_splicing CNTNAP5 NA CNTNAP5 NA NA NA NA NA NA -CNTNAP5--CNTNAP5 BS_S69QZAJR 6.590309910204 6.590309910204 NA NA differentially expressed differentially expressed NA NA 2:124798320 2:124763672 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.89Mb]],duplication/non-canonical_splicing CNTNAP5 NA CNTNAP5 NA NA NA NA NA NA -CNTNAP5--CNTNAP5 BS_SDA4RMMG 7.74435624669922 7.74435624669922 NA NA differentially expressed differentially expressed NA NA 2:124798320 2:124772799 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.89Mb]],duplication/non-canonical_splicing CNTNAP5 NA CNTNAP5 NA NA NA NA NA NA -CNTNAP5--CNTNAP5 BS_TK84K675 1.92015598309187 1.92015598309187 NA NA no change no change NA NA 2:124798320 2:124772799 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.89Mb]],duplication/non-canonical_splicing CNTNAP5 NA CNTNAP5 NA NA NA NA NA NA -CNTNAP5--CNTNAP5 BS_W18SF91A 3.37194544277583 3.37194544277583 NA NA differentially expressed differentially expressed NA NA 2:124798320 2:124772799 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.89Mb]],duplication/non-canonical_splicing CNTNAP5 NA CNTNAP5 NA NA NA NA NA NA -CNTNAP5--CNTNAP5 BS_ZRM0W01M 6.08356711080656 6.08356711080656 NA NA differentially expressed differentially expressed NA NA 2:124798320 2:124772799 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.89Mb]],duplication/non-canonical_splicing CNTNAP5 NA CNTNAP5 NA NA NA NA NA NA -CNTNAP5--TMEM18 BS_RRAEQZ97 7.29135363177993 -0.748002992739896 NA NA differentially expressed no change NA NA 2:124025732 2:669850 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr2:123.35Mb]],inversion CNTNAP5 NA TMEM18 NA NA NA NA NA NA -CNTRL--CNTRL BS_7G42J2SK 3.71924440310096 3.71924440310096 NA NA differentially expressed differentially expressed NA NA 9:121168321 9:121158855 ARRIBA frameshift 15 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.10Mb]],duplication/non-canonical_splicing CNTRL NA CNTRL NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CNTRL--CNTRL BS_G63HYD6N 0.518228377869074 0.518228377869074 NA NA no change no change NA NA 9:121168321 9:121158855 ARRIBA frameshift 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.10Mb]],duplication/non-canonical_splicing CNTRL NA CNTRL NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CNTROB--AL160279.1(17597)/CTSL3P(12903) BS_3XY76V8T -1.88489220735486 NA NA -0.0966299681309815 no change NA NA no change 17:7945986 9:87759550 ARRIBA frameshift 3 0 medium [],translocation CNTROB NA AL160279.1 CTSL3P NA NA NA NA NA -COA1--TSEN2 BS_401R3KV0 0.17713819295914 0.402961993117794 NA NA no change no change NA NA 7:43729429 3:12489784 ARRIBA other 15 1 high [INTERCHROMOSOMAL[chr7--chr3]],translocation COA1 NA TSEN2 NA NA NA NA NA NA -COA1--TSEN2 BS_401R3KV0 0.17713819295914 0.402961993117794 NA NA no change no change NA NA 7:43665658 3:12489784 ARRIBA other 2 2 high [INTERCHROMOSOMAL[chr7--chr3]],translocation COA1 NA TSEN2 NA NA NA NA NA NA -COBL--ZNF445 BS_D2K9C7XR -0.875660884858534 3.49731127042416 NA NA no change differentially expressed NA NA 7:51136158 3:44458364 ARRIBA frameshift 1 1 high [INTERCHROMOSOMAL[chr7--chr3]],translocation COBL NA ZNF445 NA NA TranscriptionFactor NA NA NA -COBL--ZNF445 BS_D2K9C7XR -0.875660884858534 3.49731127042416 NA NA no change differentially expressed NA NA 7:51136158 3:44455696 ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr7--chr3]],translocation COBL NA ZNF445 NA NA TranscriptionFactor NA NA NA -COBL--ZNF852 BS_D2K9C7XR -0.875660884858534 3.51432974212811 NA NA no change differentially expressed NA NA 7:51136158 3:44500637 ARRIBA in-frame 2 1 medium [INTERCHROMOSOMAL[chr7--chr3]],translocation COBL NA ZNF852 NA NA TranscriptionFactor NA NA NA -COBLL1--COBLL1 BS_07ANYSYQ 3.14900235221925 3.14900235221925 NA NA differentially expressed differentially expressed NA NA 2:164692221 2:164722522 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.19Mb]],duplication/non-canonical_splicing COBLL1 NA COBLL1 NA NA NA NA NA NA -COBLL1--SCN3A BS_HKZENFDA 1.91086401490124 3.16272172157302 NA NA no change differentially expressed NA NA 2:164771944 2:165162828 ARRIBA other 11 1 high [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.24Mb]],duplication COBLL1 NA SCN3A NA NA NA NA NA TCGAFusion -COG3--STARP1(171672)/HNRNPA3P5(305307) BS_TXZ7KHTQ 0.534675448828424 -0.0575441491978532 NA -0.302223141789794 no change no change NA no change 13:45486575 13:65482625 ARRIBA frameshift 1 1 high [],inversion COG3 NA STARP1 HNRNPA3P5 NA NA NA NA NA -COG4--AC040174.1 BS_4GTESTSE 1.34152271887482 NA NA NA no change NA NA NA 16:70508406 16:63119365 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr16:7.35Mb]],deletion COG4 NA AC040174.1 NA NA NA NA NA NA -COG6--COG6 BS_CXVJK2FY 3.24540697561737 3.24540697561737 NA NA differentially expressed differentially expressed NA NA 13:39689824 13:39687503 ARRIBA frameshift 11 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.14Mb]],duplication/non-canonical_splicing COG6 NA COG6 NA NA NA NA NA NA -COG6--COG6 BS_EK5PCKY0 0.980323704385028 0.980323704385028 NA NA no change no change NA NA 13:39694725 13:39687503 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.14Mb]],duplication/non-canonical_splicing COG6 NA COG6 NA NA NA NA NA NA -COG6--COG6 BS_G63HYD6N 2.55050804854134 2.55050804854134 NA NA differentially expressed differentially expressed NA NA 13:39694725 13:39687503 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.14Mb]],duplication/non-canonical_splicing COG6 NA COG6 NA NA NA NA NA NA -COG6--COG6 BS_NGHK9RZP 2.32584743522197 2.32584743522197 NA NA differentially expressed differentially expressed NA NA 13:39689824 13:39687503 ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.14Mb]],duplication/non-canonical_splicing COG6 NA COG6 NA NA NA NA NA NA -COL11A1--COL11A1 BS_31TF0P1N 2.77333638297428 2.77333638297428 NA NA differentially expressed differentially expressed NA NA 1:102934449 1:103018859 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing COL11A1 NA COL11A1 NA Oncogene Oncogene NA NA NA -COL11A1--COL11A1 BS_R244Z0WX 1.9681641741162 1.9681641741162 NA NA no change no change NA NA 1:102913637 1:103025613 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing COL11A1 NA COL11A1 NA Oncogene Oncogene NA NA NA -COL21A1--COL21A1 BS_VNE0ZPBS 0.427557490973006 0.427557490973006 NA NA no change no change NA NA 6:56074232 6:56156949 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.34Mb]],duplication/non-canonical_splicing COL21A1 NA COL21A1 NA NA NA NA NA NA -COL4A5--COL4A5 BS_NGHK9RZP 0.366815787107354 0.366815787107354 NA NA no change no change NA NA X:108584525 X:108571413 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.26Mb]],duplication/non-canonical_splicing COL4A5 NA COL4A5 NA NA NA NA NA NA -COL5A1--CAMSAP1 BS_0XEG6SNV 6.35681050503468 1.85468136015086 NA NA differentially expressed no change NA NA 9:134732127 9:135816005 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr9:0.96Mb]],inversion COL5A1 NA CAMSAP1 NA NA NA NA NA NA -COL5A1--COL5A1 BS_WSQMAA33 1.29503770558446 1.29503770558446 NA NA no change no change NA NA 9:134825904 9:134801954 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.20Mb]],duplication/non-canonical_splicing COL5A1 NA COL5A1 NA NA NA NA NA NA -COL5A1--TSC22D1 BS_TK84K675 5.69784118984648 -2.10172521257773 NA NA differentially expressed differentially expressed NA NA 9:134738808 13:44436095 ARRIBA frameshift 2 2 medium [INTERCHROMOSOMAL[chr9--chr13]],translocation COL5A1 NA TSC22D1 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -COLGALT2--TSEN15(8673)/Y_RNA(88829) BS_WYG77VVP -2.72939150114521 -0.16664193147275 NA 9.47813042485857 differentially expressed no change NA differentially expressed 1:183951007 1:184082885 ARRIBA frameshift 3 0 medium [],duplication COLGALT2 NA TSEN15 Y_RNA NA NA NA NA NA -COMMD10--DMXL1 BS_7327SDAQ -2.23717428537795 0.00763265355154949 NA NA differentially expressed no change NA NA 5:116092700 5:119097979 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr5:2.63Mb]],deletion COMMD10 NA DMXL1 NA NA NA NA NA NA -COMMD2--CBLB BS_FAQQ0GCQ 1.43698529944835 0.412894671802207 NA NA no change no change NA NA 3:149748160 3:105796643 ARRIBA frameshift 24 3 medium [INTRACHROMOSOMAL[chr3:43.87Mb]],inversion/5'-5' COMMD2 NA CBLB NA NA CosmicCensus, Oncogene NA NA NA -COMMD3-BMI1--RNU6-413P(39256)/ARMC3(101269) BS_FBJ5Q54N 1.26023271258731 NA NA -0.0440606299493207 no change NA NA no change 10:22329448 10:22826755 ARRIBA frameshift 144 24 high [],deletion COMMD3-BMI1 NA RNU6-413P ARMC3 NA NA NA NA NA -COPB1--NAV2 BS_6JHXXVR7 3.42508608923226 1.92020773653918 NA NA differentially expressed no change NA NA 11:14474495 11:19703483 ARRIBA frameshift 14 6 high [INTRACHROMOSOMAL[chr11:4.85Mb]],duplication/5'-5' COPB1 NA NAV2 NA NA NA NA NA NA -COPB1--RAG1 BS_6JHXXVR7 3.42508608923226 10.2585936784579 NA NA differentially expressed differentially expressed NA NA 11:14474495 11:36563385 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr11:22.01Mb]],inversion COPB1 NA RAG1 NA NA TranscriptionFactor NA NA NA -COPB1--RAG1 BS_6JHXXVR7 3.42508608923226 10.2585936784579 NA NA differentially expressed differentially expressed NA NA 11:14474495 11:36573291 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:22.01Mb]],inversion COPB1 NA RAG1 NA NA TranscriptionFactor NA NA NA -COPB1--TEAD1(13209)/LINC00958(4150) BS_T1YHK6B7 0.448849002644448 6.9125147792295 NA 7.34589042058677 no change differentially expressed NA differentially expressed 11:14476919 11:12957692 ARRIBA frameshift 2 0 medium [],inversion COPB1 NA TEAD1 LINC00958 NA TranscriptionFactor NA NA NA -COPB2--TMCC1 BS_FAQQ0GCQ 1.34285362733964 1.28584280292272 NA NA no change no change NA NA 3:139379047 3:129671264 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr3:9.46Mb]],deletion COPB2 NA TMCC1 NA NA NA NA NA NA -COPB2--TMCC1 BS_FAQQ0GCQ 1.34285362733964 1.28584280292272 NA NA no change no change NA NA 3:139379380 3:129671264 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr3:9.46Mb]],deletion COPB2 NA TMCC1 NA NA NA NA NA NA -COPG2--NDUFB9P2(121049)/AC009518.2(17315) BS_6JHXXVR7 0.789089232920352 NA NA 2.15099131888623 no change NA NA differentially expressed 7:130610953 7:131875301 ARRIBA frameshift 3 0 high [],inversion COPG2 NA NDUFB9P2 AC009518.2 NA NA NA NA NA -CORO1C--API5 BS_W60RQAKK 0.148585331928523 1.36019330975827 NA NA no change no change NA NA 12:108701124 11:43283493 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr12--chr11]],translocation CORO1C NA API5 NA Oncogene NA NA NA NA -CORO1C--HNRNPKP3(14100)/API5(28470) BS_W60RQAKK 0.148585331928523 3.52445111589269 NA 1.36019330975827 no change differentially expressed NA no change 12:108701124 11:43283493 ARRIBA frameshift 2 0 high [],translocation CORO1C NA HNRNPKP3 API5 Oncogene NA NA NA NA -CORO1C--NSUN6 BS_QWTE1CWR 4.09510378684349 -1.76550025223457 NA NA differentially expressed no change NA NA 12:108678272 10:18551971 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr12--chr10]],translocation CORO1C NA NSUN6 NA Oncogene NA NA NA NA -CORO7--ERVK13-1 BS_DBDXCXT5 1.12303002796269 NA NA NA no change NA NA NA 16:4405491 16:2672859 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr16:1.68Mb]],deletion CORO7 NA ERVK13-1 NA NA NA NA NA NA -COX10--AC015813.5(7868)/AC015813.3(60836) BS_X23724NJ 1.14879270840172 NA NA NA no change NA NA NA 17:14102242 17:58016055 ARRIBA frameshift 2 0 medium [],inversion COX10 NA AC015813.5 AC015813.3 NA NA NA NA NA -COX14--RBM19 BS_M85CXHDV -1.31520394048989 -0.350161041256675 NA NA no change no change NA NA 12:50112301 12:113920542 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:63.70Mb]],deletion/5'-5' COX14 NA RBM19 NA NA NA NA NA NA -CP--IGFBP7 BS_1TPWFSK6 3.44810130620808 4.05915928752228 NA NA differentially expressed differentially expressed NA NA 3:149212451 4:57032552 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr3--chr4]],translocation CP NA IGFBP7 NA NA TumorSuppressorGene, Oncogene NA NA NA -CPE--KLHL2 BS_JR5ATB7G 0.178144615285265 -1.85796475167366 NA NA no change no change NA NA 4:165379528 4:165294359 ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chr4:0.04Mb],LOCAL_REARRANGEMENT:+:[38038]],duplication CPE NA KLHL2 NA NA NA NA NA NA -CPED1--CTTNBP2 BS_6DCSD5Y6 7.42232534093731 6.06964331817141 NA NA differentially expressed differentially expressed NA NA 7:121138319 7:117784454 ARRIBA other 66 5 high [INTRACHROMOSOMAL[chr7:3.11Mb]],deletion/3'-3' CPED1 NA CTTNBP2 NA NA NA NA NA NA -CPNE5--AL135908.1 BS_KE56MMY0 -0.982966638130811 NA NA NA no change NA NA NA 6:36740939 6:50587685 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:13.75Mb]],inversion/3'-3' CPNE5 NA AL135908.1 NA NA NA NA NA NA -CPQ--AC090578.1(64785)/RPSAP74(369708) BS_HE57E1RP -0.345084149262098 NA NA NA no change NA NA NA 8:96835180 8:88873693 ARRIBA frameshift 2 0 medium [],duplication CPQ NA AC090578.1 RPSAP74 NA NA NA NA NA -CPQ--AC091167.7 BS_MM20BVW9 3.17545755199143 NA NA NA differentially expressed NA NA NA 8:97029494 15:90314298 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr8--chr15]],translocation CPQ NA AC091167.7 NA NA NA NA NA NA -CPQ--CCDC57 BS_C0XFDP38 2.87133675095611 -1.05104555893038 NA NA differentially expressed no change NA NA 8:96785330 17:82163357 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr8--chr17]],translocation CPQ NA CCDC57 NA NA NA NA NA NA -CPQ--SDC2 BS_X2QTK3QD 3.42754323592202 4.58262933759059 NA NA differentially expressed differentially expressed NA NA 8:96966046 8:96593480 ARRIBA frameshift 2 0 medium [GTEx,CCLE,INTRACHROMOSOMAL[chr8:0.03Mb],LOCAL_REARRANGEMENT:+:[33447]],duplication CPQ NA SDC2 NA NA NA NA NA NA -CPQ--ZNF774 BS_MM20BVW9 3.17545755199143 0.517863885669491 NA NA differentially expressed no change NA NA 8:97029494 15:90354642 ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr8--chr15]],translocation CPQ NA ZNF774 NA NA TranscriptionFactor NA NA NA -CPQ--ZNF774 BS_MM20BVW9 3.17545755199143 0.517863885669491 NA NA differentially expressed no change NA NA 8:97029494 15:90358851 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr8--chr15]],translocation CPQ NA ZNF774 NA NA TranscriptionFactor NA NA NA -CPSF6--AC078777.1(7670)/LINC02421(30458) BS_Q9V7A95C 10.1564656845453 NA NA NA differentially expressed NA NA NA 12:69262562 12:67678589 ARRIBA frameshift 4 2 medium [],duplication CPSF6 NA AC078777.1 LINC02421 NA NA NA NA NA -CPSF6--EPYC(37292)/KERA(8173) BS_Q9V7A95C 10.1564656845453 121.951019753127 NA 34.0583616174926 differentially expressed differentially expressed NA differentially expressed 12:69262562 12:91042318 ARRIBA frameshift 9 5 medium [],deletion CPSF6 NA EPYC KERA NA NA NA NA NA -CPSF6--FGFR1OP2 BS_JXNZYGCR 1.50802453756859 -0.7050044103682 NA NA no change no change NA NA 12:69262562 12:26963342 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr12:42.27Mb]],duplication CPSF6 NA FGFR1OP2 NA NA NA NA NA NA -CPSF6--LINC01481 BS_Q9V7A95C 10.1564656845453 2.3671703538023 NA NA differentially expressed differentially expressed NA NA 12:69262562 12:70242893 ARRIBA frameshift 153 14 medium [INTRACHROMOSOMAL[chr12:0.63Mb]],inversion CPSF6 NA LINC01481 NA NA NA NA NA NA -CPSF6--MEG8 BS_Q9V7A95C 10.1564656845453 5.92218098512609 NA NA differentially expressed differentially expressed NA NA 12:69262562 14:100935772 ARRIBA frameshift 5 1 medium [INTERCHROMOSOMAL[chr12--chr14]],translocation CPSF6 NA MEG8 NA NA NA NA NA NA -CPSF6--MEG8 BS_Q9V7A95C 10.1564656845453 5.92218098512609 NA NA differentially expressed differentially expressed NA NA 12:69262562 14:100967639 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr14]],translocation CPSF6 NA MEG8 NA NA NA NA NA NA -CPSF6--PCNX4 BS_9DFBHHB5 1.13249212030505 NA NA NA no change NA NA NA 12:69262562 14:60115719 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr12--chr14]],translocation CPSF6 NA PCNX4 NA NA NA NA NA NA -CPVL--CPVL BS_063ERW0R 0.779971032113058 0.779971032113058 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 20 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_0WVJYM9R 1.25759133380073 1.25759133380073 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 11 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_0Y66ZBWE 0.956156262637346 0.956156262637346 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 25 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_13CGKADW 0.542250707492733 0.542250707492733 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 19 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_2SFTWNVE 0.71609602633011 0.71609602633011 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 36 7 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_470DYRJQ 1.16315457111214 1.16315457111214 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 50 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_5PEFNDCY 1.12902090695513 1.12902090695513 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 79 7 high [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_5PJCHF6V 1.21792719371777 1.21792719371777 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_61E80SD6 -0.18682118021028 -0.18682118021028 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 2 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_68BW2163 -0.434583513581157 -0.434583513581157 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_7FWZ518S 0.924874807529419 0.924874807529419 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 29 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_90B22NGP 2.32615664571023 2.32615664571023 NA NA differentially expressed differentially expressed NA NA 7:29181290 7:29186547 ARRIBA other 27 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_9DZ253JY 1.09386504781599 1.09386504781599 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 14 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_A14Z8BBK 0.466675854962879 0.466675854962879 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 10 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_B8T7M0WV 1.13962966431405 1.13962966431405 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 18 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_BA6AZWB3 0.842818050042157 0.842818050042157 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 6 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_CGB2WS2A 0.766745796425503 0.766745796425503 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_DV86M0Y7 1.217103603487 1.217103603487 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 18 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_EHVYJAVA 1.83497620986399 1.83497620986399 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 7 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_ET8CJXSF 0.726152000664743 0.726152000664743 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 11 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_FEPRNEXX 1.45359501721533 1.45359501721533 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 83 12 high [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_G9XE3N9T 0.868597262385438 0.868597262385438 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 17 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_GCA4GET3 1.48089147835893 1.48089147835893 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 22 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_GS1KR5PK 0.962313765349108 0.962313765349108 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 57 10 high [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_GYA4V1RD 0.286479011689774 0.286479011689774 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 14 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_H8A9PSYA 1.70270371291933 1.70270371291933 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 8 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_J71N7D09 1.39560654806442 1.39560654806442 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 15 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_ME3HKN2C 0.884016235945388 0.884016235945388 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 11 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_N6NE6B3W 1.49137393929922 1.49137393929922 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 177 14 high [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_NKRYMHEP 0.579707532875955 0.579707532875955 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_NZ71XCG3 0.800121423825977 0.800121423825977 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 13 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_PKW05VZV 0.875230205598335 0.875230205598335 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 3 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_QEYPFYHD 0.00615771528875344 0.00615771528875344 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 11 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_QPPPGYP4 -0.200520610164222 -0.200520610164222 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 14 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_QTSXW7DA 1.04814821625759 1.04814821625759 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 9 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_RCC8BXVE 0.0380750004825194 0.0380750004825194 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_S69QZAJR 0.548091653997435 0.548091653997435 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 22 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_SDA4RMMG 0.621492292773811 0.621492292773811 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 13 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_SFKZSJN1 0.959239050822184 0.959239050822184 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 51 5 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_T2QPMZCM 1.11831541187239 1.11831541187239 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 13 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_W9AT0MR7 0.253249590898765 0.253249590898765 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_WWKNJSJ5 0.999587620604035 0.999587620604035 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_X0F9AYEC 0.667117400991869 0.667117400991869 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 8 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_Y7F9E2E9 1.36984987717998 1.36984987717998 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 16 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_Z6MC4N8D 1.01827802681142 1.01827802681142 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_Z7PKVY9J -0.268599264188809 -0.268599264188809 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 3 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_ZA9XT151 1.20883576772746 1.20883576772746 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 19 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_ZRM0W01M 1.35162492527233 1.35162492527233 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 62 4 high [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CPVL--CPVL BS_ZXYDSBM9 -0.46525652215831 -0.46525652215831 NA NA no change no change NA NA 7:29181290 7:29186547 ARRIBA other 3 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA -CR381572.2(4061)/CR381572.1(16466)--MYO18B BS_1HQ76V6D NA 7.4472859321154 NA NA NA differentially expressed NA NA 21:8684995 22:25946137 ARRIBA other 9 0 high [],translocation CR381572.2 CR381572.1 MYO18B NA NA TumorSuppressorGene NA NA NA -CR381653.2--CR381670.1 BS_9NJHQE9F NA NA NA NA NA NA NA NA 21:9373947 21:8864001 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr21:0.49Mb]],inversion CR381653.2 NA CR381670.1 NA NA NA NA NA NA -CR381653.2--CR381670.1 BS_DV86M0Y7 NA NA NA NA NA NA NA NA 21:9373947 21:8864001 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr21:0.49Mb]],inversion CR381653.2 NA CR381670.1 NA NA NA NA NA NA -CR381653.2--CR381670.1 BS_ZRM0W01M NA NA NA NA NA NA NA NA 21:9373947 21:8863998 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr21:0.49Mb]],inversion CR381653.2 NA CR381670.1 NA NA NA NA NA NA -CRACR2A--AC010880.1(19500)/AC104623.1(70974) BS_W644VEVE 28.5413150224443 NA NA NA differentially expressed NA NA NA 12:3678915 2:16452202 ARRIBA frameshift 4 1 medium [],translocation CRACR2A NA AC010880.1 AC104623.1 NA NA NA NA NA -CRACR2A--AC174048.1(20556)/SNORA40(29253) BS_W644VEVE 28.5413150224443 NA NA 5.01769756318913 differentially expressed NA NA differentially expressed 12:3673446 2:16169950 ARRIBA frameshift 8 0 medium [],translocation CRACR2A NA AC174048.1 SNORA40 NA NA NA NA NA -CRACR2A--B4GALNT3 BS_W644VEVE 28.5413150224443 9.84057173156904 NA NA differentially expressed differentially expressed NA NA 12:3713237 12:535166 ARRIBA other 6 2 medium [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion CRACR2A NA B4GALNT3 NA NA NA NA NA NA -CRACR2A--B4GALNT3 BS_W644VEVE 28.5413150224443 9.84057173156904 NA NA differentially expressed differentially expressed NA NA 12:3696772 12:558016 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion CRACR2A NA B4GALNT3 NA NA NA NA NA NA -CRACR2A--B4GALNT3 BS_W644VEVE 28.5413150224443 9.84057173156904 NA NA differentially expressed differentially expressed NA NA 12:3654212 12:559295 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion CRACR2A NA B4GALNT3 NA NA NA NA NA NA -CRACR2A--CCDC77 BS_W644VEVE 28.5413150224443 2.84829449265605 NA NA differentially expressed differentially expressed NA NA 12:3713237 12:433644 ARRIBA other 7 1 medium [INTRACHROMOSOMAL[chr12:3.16Mb]],deletion/5'-5' CRACR2A NA CCDC77 NA NA NA NA NA NA -CRB1--CRB1 BS_ZZPBANDD 0.479084678460141 0.479084678460141 NA NA no change no change NA NA 1:197442292 1:197328422 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing CRB1 NA CRB1 NA NA NA NA NA NA -CREB1--SPAG16 BS_PGK832G2 4.59447052153919 -2.33082478145622 NA NA differentially expressed differentially expressed NA NA 2:207570321 2:213317219 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:5.68Mb]],deletion CREB1 NA SPAG16 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -CREB1--SPAG16 BS_PGK832G2 4.59447052153919 -2.33082478145622 NA NA differentially expressed differentially expressed NA NA 2:207530134 2:213310059 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:5.68Mb]],deletion CREB1 NA SPAG16 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -CREB3L2--CDK14 BS_RB2S0KDF 8.92897605051636 -0.0640737049510798 NA NA differentially expressed no change NA NA 7:137901354 7:90692223 ARRIBA frameshift 56 1 high [INTRACHROMOSOMAL[chr7:46.66Mb]],deletion/5'-5' CREB3L2 NA CDK14 NA CosmicCensus, Oncogene, TranscriptionFactor Kinase NA NA NA -CREB3L2--TMEM178B BS_NT9NZYFD 3.58013932852225 1.74767652863148 NA NA differentially expressed no change NA NA 7:137901354 7:141375394 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr7:3.07Mb]],duplication/5'-5' CREB3L2 NA TMEM178B NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -CREB3L2--TSC22D4 BS_WH8G4VFB 4.31842399486367 -1.96435152007621 NA NA differentially expressed no change NA NA 7:138001604 7:100474440 ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr7:37.40Mb]],deletion CREB3L2 NA TSC22D4 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -CREBBP--APP BS_6JHXXVR7 4.30934106650149 0.702319814728032 NA NA differentially expressed no change NA NA 16:3879832 21:25911962 ARRIBA in-frame 3 0 low [INTERCHROMOSOMAL[chr16--chr21]],translocation CREBBP NA APP NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -CREBBP--DOK5 BS_401R3KV0 2.39176668955086 1.11773257827142 NA NA differentially expressed no change NA NA 16:3879832 20:54643458 ARRIBA frameshift 161 7 high [INTERCHROMOSOMAL[chr16--chr20]],translocation CREBBP NA DOK5 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -CREBBP--SMG1 BS_PZVHMSYN 2.48081109851509 1.9624355002684 NA NA differentially expressed no change NA NA 16:3810603 16:18819654 ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr16:14.92Mb]],duplication CREBBP NA SMG1 NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, Kinase NA NA NA -CREBRF--LINC01121(9516)/SRBD1(55869) BS_1D6PZNKN 3.51863321350208 -0.406899648721579 NA 5.15829366831778 differentially expressed no change NA differentially expressed 5:173123202 2:45332811 ARRIBA frameshift 10 0 high [],translocation CREBRF NA LINC01121 SRBD1 NA NA NA NA NA -CREBRF--SFXN1 BS_DFGS950G 2.92830885431259 3.09122493874178 NA NA differentially expressed differentially expressed NA NA 5:173086626 5:175525007 ARRIBA frameshift 11 4 high [INTRACHROMOSOMAL[chr5:2.34Mb]],inversion/3'-3' CREBRF NA SFXN1 NA NA NA NA NA NA -CRISPLD1--CASC19 BS_1AYRM596 1.98986653220146 17.6241186451601 NA NA no change differentially expressed NA NA 8:75014912 8:127162656 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr8:52.04Mb]],deletion/5'-5' CRISPLD1 NA CASC19 NA NA NA NA NA NA -CRK--DNAH2 BS_23QW0BBA 1.81290135948455 2.19118875693626 NA NA no change differentially expressed NA NA 17:1455877 17:7786124 ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr17:6.25Mb]],inversion CRK NA DNAH2 NA Oncogene NA NA NA NA -CRK--ITGAE BS_M0QYNVK8 0.777044308714694 -2.27490823780217 NA NA no change differentially expressed NA NA 17:1436790 17:3763960 ARRIBA frameshift 12 0 high [INTRACHROMOSOMAL[chr17:2.25Mb]],duplication CRK NA ITGAE NA Oncogene NA NA NA NA -CRK--ITGAE BS_M0QYNVK8 0.777044308714694 -2.27490823780217 NA NA no change differentially expressed NA NA 17:1436620 17:3763960 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr17:2.25Mb]],duplication CRK NA ITGAE NA Oncogene NA NA NA NA -CRK--ITGAE BS_M0QYNVK8 0.777044308714694 -2.27490823780217 NA NA no change differentially expressed NA NA 17:1436790 17:3761520 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr17:2.25Mb]],duplication CRK NA ITGAE NA Oncogene NA NA NA NA -CRK--ITGAE BS_M0QYNVK8 0.777044308714694 -2.27490823780217 NA NA no change differentially expressed NA NA 17:1455877 17:3761520 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:2.25Mb]],duplication CRK NA ITGAE NA Oncogene NA NA NA NA -CRK--ITGAE BS_M0QYNVK8 0.777044308714694 -2.27490823780217 NA NA no change differentially expressed NA NA 17:1436790 17:3761982 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr17:2.25Mb]],duplication CRK NA ITGAE NA Oncogene NA NA NA NA -CRK--MICU2 BS_QWTE1CWR 1.20244616310102 -2.27536707995628 NA NA no change differentially expressed NA NA 17:1455877 13:21539688 ARRIBA in-frame 11 0 medium [INTERCHROMOSOMAL[chr17--chr13]],translocation CRK NA MICU2 NA Oncogene NA NA NA NA -CRK--MICU2 BS_WKESC3XN 1.84013903122716 -1.61128859186814 NA NA no change no change NA NA 17:1455877 13:21539688 ARRIBA in-frame 37 6 high [INTERCHROMOSOMAL[chr17--chr13]],translocation CRK NA MICU2 NA Oncogene NA NA NA NA -CRK--NPC1 BS_4B0BAVTX -1.03471142902115 0.267712488747434 NA NA no change no change NA NA 17:1436779 18:23570364 ARRIBA frameshift 11 0 medium [INTERCHROMOSOMAL[chr17--chr18]],translocation/5'-5' CRK NA NPC1 NA Oncogene NA NA NA NA -CRKL--RPLP0P7(353215)/CDK7P1(79260) BS_1D6PZNKN 3.00504189967974 -0.0714106496115076 NA NA differentially expressed no change NA NA 22:20950175 2:157131587 ARRIBA other 18 0 medium [],translocation CRKL NA RPLP0P7 CDK7P1 Oncogene NA NA NA NA -CROCCP2--ZBTB8B BS_8SKZ7BRN 1.46892117903432 2.35550306921067 NA NA no change differentially expressed NA NA 1:16625775 1:32490501 ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr1:15.81Mb]],duplication/5'-5' CROCCP2 NA ZBTB8B NA NA TranscriptionFactor NA NA NA -CRTAC1--IFFO2(3816)/AL137127.1(111608) BS_P0QF87WC -0.413844030419871 1.93381783150442 NA NA no change no change NA NA 10:97935941 1:18960502 ARRIBA frameshift 53 2 medium [],translocation CRTAC1 NA IFFO2 AL137127.1 NA NA NA NA NA -CRTAC1--IFFO2(3816)/AL137127.1(111608) BS_WAXJY4XQ -0.750212230675337 0.877038799237788 NA NA no change no change NA NA 10:97935941 1:18960502 ARRIBA frameshift 24 1 medium [],translocation CRTAC1 NA IFFO2 AL137127.1 NA NA NA NA NA -CRTAC1--IFFO2(3816)/AL137127.1(111608) BS_WJ9H4NZZ -0.875597991800187 1.16606587708859 NA NA no change no change NA NA 10:97935941 1:18960502 ARRIBA frameshift 9 1 medium [],translocation CRTAC1 NA IFFO2 AL137127.1 NA NA NA NA NA -CRY1--SNORA33(284804)/R3HDM2P2(149561) BS_PNYN0AYD 2.78440997265449 4.92610599458729 NA 1.43242077572778 differentially expressed differentially expressed NA no change 12:107022084 6:103868072 ARRIBA frameshift 4 0 medium [],translocation CRY1 NA SNORA33 R3HDM2P2 NA NA NA NA NA -CRY1--SNORA33(381771)/R3HDM2P2(52594) BS_R5SNFB5B 2.2513782444988 6.39496746846936 NA 1.43242077572778 differentially expressed differentially expressed NA no change 12:107022084 6:103965039 ARRIBA frameshift 4 0 high [],translocation CRY1 NA SNORA33 R3HDM2P2 NA NA NA NA NA -CRY1--SNORA33(421568)/R3HDM2P2(12797) BS_PNYN0AYD 2.78440997265449 4.92610599458729 NA 1.43242077572778 differentially expressed differentially expressed NA no change 12:107022084 6:104004836 ARRIBA frameshift 3 1 medium [],translocation CRY1 NA SNORA33 R3HDM2P2 NA NA NA NA NA -CRYL1--CRYL1(34392)/AL590096.1(4459) BS_D2K9C7XR -0.187840237654209 -0.187840237654209 NA NA no change no change NA NA 13:20512443 13:20560249 ARRIBA frameshift 9 0 high [],duplication CRYL1 NA CRYL1 AL590096.1 NA NA NA NA NA -CRYL1--IFT88 BS_D2K9C7XR -0.187840237654209 1.01782285994425 NA NA no change no change NA NA 13:20512443 13:20584152 ARRIBA frameshift 19 0 high [INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_INVERSION:-:+:[41212]],duplication/5'-5' CRYL1 NA IFT88 NA NA TumorSuppressorGene NA NA NA -CSGALNACT2--AP001972.5(1368)/ARRB1(348) BS_Z72QAZC7 -1.24541576309363 NA NA 0.281381715173182 no change NA NA no change 10:43184126 11:75263834 ARRIBA other 2 0 low [],translocation CSGALNACT2 NA AP001972.5 ARRB1 NA NA NA NA NA -CSMD1--CSMD1 BS_HCP5C912 2.03249254160222 2.03249254160222 NA NA differentially expressed differentially expressed NA NA 8:3018477 8:3029513 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr8:2.06Mb]],duplication/non-canonical_splicing CSMD1 NA CSMD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -CSMD1--CSMD1 BS_N6NE6B3W 2.80933964887444 2.80933964887444 NA NA differentially expressed differentially expressed NA NA 8:3214497 8:3219442 ARRIBA frameshift 17 1 low [SELFIE,INTRACHROMOSOMAL[chr8:2.06Mb]],duplication/non-canonical_splicing CSMD1 NA CSMD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -CSMD1--MAP4 BS_EFEZB0ZH 2.93587795399164 0.554262964430129 NA NA differentially expressed no change NA NA 8:4419953 3:47928350 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr8--chr3]],translocation CSMD1 NA MAP4 NA TumorSuppressorGene Oncogene NA NA NA -CSMD2--CSMD2 BS_0T17SY47 2.1510123074812 2.1510123074812 NA NA differentially expressed differentially expressed NA NA 1:33788600 1:33810864 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr1:0.65Mb]],duplication/non-canonical_splicing CSMD2 NA CSMD2 NA NA NA NA NA NA -CSMD2--CSMD2 BS_1A6MQ9ZA 2.83527037312564 2.83527037312564 NA NA differentially expressed differentially expressed NA NA 1:33739140 1:33743606 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr1:0.65Mb]],duplication/non-canonical_splicing CSMD2 NA CSMD2 NA NA NA NA NA NA -CSMD2--CSMD2 BS_AJ6X83G5 1.79902360410611 1.79902360410611 NA NA no change no change NA NA 1:33646648 1:33652461 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr1:0.65Mb]],duplication/non-canonical_splicing CSMD2 NA CSMD2 NA NA NA NA NA NA -CSMD2--CSMD2 BS_N6NE6B3W 1.04741025397806 1.04741025397806 NA NA no change no change NA NA 1:33788600 1:33810864 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr1:0.65Mb]],duplication/non-canonical_splicing CSMD2 NA CSMD2 NA NA NA NA NA NA -CSMD3--CSMD3 BS_0T17SY47 3.90372148926297 3.90372148926297 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_0X9EGHY2 3.30483870934784 3.30483870934784 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_1G3WYEN3 1.59559003516752 1.59559003516752 NA NA no change no change NA NA 8:112636817 8:112656341 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_1T19NFJ8 0.925466480165088 0.925466480165088 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_273HKCT4 5.23305653172304 5.23305653172304 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 17 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_2A5R9MEJ 4.77699179311779 4.77699179311779 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 8 3 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_2XD3MNKD 0.960945459365096 0.960945459365096 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_2YCJV2VV 1.70353371672681 1.70353371672681 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_34201DKZ 2.81221323095155 2.81221323095155 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_37GTVG4N 2.118115024788 2.118115024788 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_398KYV92 1.88565493911134 1.88565493911134 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_39CGACC7 1.05852973613184 1.05852973613184 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_3MS8WVNR -0.421642548132477 -0.421642548132477 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_3P20Q2C3 5.75885484408647 5.75885484408647 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 13 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_3XY76V8T 1.63939172107387 1.63939172107387 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_49BQS7Z6 3.36601187042234 3.36601187042234 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_4W1DBAN4 3.06280948700061 3.06280948700061 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_5NWDARXG 1.35786652754775 1.35786652754775 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_5YJEPPTP 3.15084812934018 3.15084812934018 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 7 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_60K3EQ9S 1.2624507366126 1.2624507366126 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_680K119G 0.943275994793565 0.943275994793565 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_6H1C1ME9 1.01885988525477 1.01885988525477 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_6MY8W3H0 2.73630420134679 2.73630420134679 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 15 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_7BTZQKYY 4.64204546357697 4.64204546357697 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 14 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_7FWZ518S 0.0469481941687346 0.0469481941687346 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_7N0B2CY1 3.42947819958104 3.42947819958104 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_7XRN3CFX 0.61261934115502 0.61261934115502 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_8F9BDWY4 4.32155632842864 4.32155632842864 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 17 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_8RHPJ740 0.94918126844842 0.94918126844842 NA NA no change no change NA NA 8:112636817 8:112656341 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_92VDQ0NE 2.36360182844287 2.36360182844287 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_9DFBHHB5 3.68956377252372 3.68956377252372 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_9Q6Z6VJC 3.37203857586554 3.37203857586554 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_9SJWWYQ4 3.93673087058962 3.93673087058962 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_AMQGM1V9 3.00214034076767 3.00214034076767 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 19 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_AP0SZ364 3.82967471343461 3.82967471343461 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_ARFQ1WG3 4.68830628342787 4.68830628342787 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_B1HVNV0T 3.35188637502363 3.35188637502363 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_C7A2TYAC 4.22071879790455 4.22071879790455 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_CB6VK7PB 3.94296376039033 3.94296376039033 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_CREQ97QC 2.67422220706879 2.67422220706879 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_CZ82ANWP 2.73630420134679 2.73630420134679 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_DMZP9G1H 2.26071894969288 2.26071894969288 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_DSS3S5XD 2.70682672592678 2.70682672592678 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_E4QK839R 0.907514677627082 0.907514677627082 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_ERWT0ZWE 0.175380596935486 0.175380596935486 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_F8N6CFQE 4.34379711592182 4.34379711592182 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 7 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_FWMJPKCV 4.87570570489012 4.87570570489012 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 14 5 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_G9XE3N9T 1.74943412184877 1.74943412184877 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_GDHH6T5A 0.158674532376996 0.158674532376996 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_GMDQK06Q 1.61759760906473 1.61759760906473 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_GWCRMKE6 1.6219733754571 1.6219733754571 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_GYA4V1RD 2.84796100159301 2.84796100159301 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 9 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_GYXSDZ56 2.70952253348753 2.70952253348753 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_HCP5C912 2.24089274460001 2.24089274460001 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 23 4 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_JH29M4KG 2.54176141329804 2.54176141329804 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_JVA2NQFF 4.22209350295346 4.22209350295346 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 9 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_JXNZYGCR 3.80829846782287 3.80829846782287 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_K2VYFVKZ 3.70345534896448 3.70345534896448 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_K5802F84 2.50665202191594 2.50665202191594 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_KM2EX0K6 5.39531325245846 5.39531325245846 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 15 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_KPT2WPHW 2.71221511060106 2.71221511060106 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 18 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_KQ6ZW085 1.89728717561136 1.89728717561136 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_KVV7001W 2.11109328366007 2.11109328366007 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_M4NVX721 0.543048603232541 0.543048603232541 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_M4TTKPNR 2.86562385203518 2.86562385203518 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_MBSTWZA6 3.65091307964838 3.65091307964838 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_N1E0H8YQ 2.49185963582259 2.49185963582259 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_N6NE6B3W 0.585048991177327 0.585048991177327 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_N8J1DP02 0.359070655918653 0.359070655918653 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_NRFQEQKP 4.61797685191957 4.61797685191957 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_NRPG5K4K 2.42253157083095 2.42253157083095 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_NYS8TRCB 1.41131014671978 1.41131014671978 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_PK18H7E7 4.38251643124699 4.38251643124699 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_PZVHMSYN 2.7863263624543 2.7863263624543 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_Q3TBCK4V 3.93516994289062 3.93516994289062 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 8 3 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_QC3XCE6X 3.20983819105746 3.20983819105746 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 6 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_QNAQGAV6 0.514605750882079 0.514605750882079 NA NA no change no change NA NA 8:112636817 8:112685732 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_QV51J756 2.34783365613732 2.34783365613732 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_QWNBZ9RJ 5.15821049705447 5.15821049705447 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 39 11 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_R13X6TMW 2.60191294920665 2.60191294920665 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_R7HZCZ8B 1.69085096245822 1.69085096245822 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 12 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_SAA624A4 -0.117536584848106 -0.117536584848106 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_SBFNFZ8B 2.10757416730666 2.10757416730666 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 5 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_SDA4RMMG 2.66324804443703 2.66324804443703 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 5 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_SFKZSJN1 1.04161405775424 1.04161405775424 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_T4P3J13C 2.18715134084823 2.18715134084823 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_TDEFAPNH 3.71554042406426 3.71554042406426 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 12 3 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_TG93XC55 2.73896489476882 2.73896489476882 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_W18SF91A 0.150274689576499 0.150274689576499 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_WCRKYV0T 2.02507492041003 2.02507492041003 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_X0F9AYEC 0.52175028895983 0.52175028895983 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_YB2RXRHT 2.06131692114501 2.06131692114501 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_YVMEEBKC 4.37995579811248 4.37995579811248 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 14 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_YY5B2XDD 2.98313849109802 2.98313849109802 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_Z6BWR941 4.84466991683206 4.84466991683206 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 10 4 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_ZR96A4FH 2.70682672592678 2.70682672592678 NA NA differentially expressed differentially expressed NA NA 8:112921627 8:112976148 ARRIBA in-frame 14 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSMD3--CSMD3 BS_ZRM0W01M 1.54187539761285 1.54187539761285 NA NA no change no change NA NA 8:112921627 8:112976148 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -CSNK1A1P1--U3(15980)/AC018563.1(7540) BS_8RHPJ740 10.6228902386366 3.17026544745126 NA NA differentially expressed differentially expressed NA NA 15:36804578 15:36868839 ARRIBA other 2 1 high [],duplication CSNK1A1P1 NA U3 AC018563.1 NA NA NA NA NA -CSNK1A1P1--U3(9262)/AC018563.1(14258) BS_HZ707C55 17.2724116634117 4.46747332617504 NA NA differentially expressed differentially expressed NA NA 15:36817177 15:36862121 ARRIBA other 2 0 low [],duplication CSNK1A1P1 NA U3 AC018563.1 NA NA NA NA NA -CSNK1E--Z98749.2 BS_44A3ES23 2.6043082000435 NA NA NA differentially expressed NA NA NA 22:38293255 22:38336706 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr22:0.02Mb],LOCAL_REARRANGEMENT:-:[17678]],duplication CSNK1E NA Z98749.2 NA Kinase NA NA NA NA -CSNK1G2--BTBD2 BS_TA9WP4TH 0.743147756071824 -0.124981789052416 NA NA no change no change NA NA 19:1941418 19:1997463 ARRIBA other 2 0 low [CCLE,INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_INVERSION:+:-:[4100]],inversion CSNK1G2 NA BTBD2 NA Kinase NA NA NA NA -CSPP1--NSMCE2(32577)/TRIB1(30624) BS_HZRM07TW -1.38272345958931 -0.624252881377302 NA 1.89081316551046 no change no change NA no change 8:67118821 8:125399697 ARRIBA frameshift 6 0 high [],deletion CSPP1 NA NSMCE2 TRIB1 NA NA NA Kinase NA -CSTF3--AL035078.1 BS_49FQXT2E -0.358138285823176 NA NA NA no change NA NA NA 11:33096826 11:32036068 ARRIBA frameshift 6 0 low [INTRACHROMOSOMAL[chr11:1.04Mb]],deletion CSTF3 NA AL035078.1 NA NA NA NA NA NA -CTAGE5--AC104042.1(25665)/SNORA31(978593) BS_6JHXXVR7 -0.675647826833287 NA NA 5.65538771212347 no change NA NA differentially expressed 14:39279537 11:36723532 ARRIBA frameshift 16 0 high [],translocation CTAGE5 NA AC104042.1 SNORA31 NA NA NA NA NA -CTAGE5--AL132857.2 BS_RB2S0KDF 1.40272915210811 NA NA NA no change NA NA NA 14:39348977 14:36454029 ARRIBA frameshift 13 0 high [INTRACHROMOSOMAL[chr14:2.57Mb]],inversion/3'-3' CTAGE5 NA AL132857.2 NA NA NA NA NA NA -CTAGE5--AL133372.2(72463)/AL079305.1(602) BS_K17VQECG -0.428937576020336 NA NA NA no change NA NA NA 14:39387881 14:30369506 ARRIBA other 6 0 low [],inversion CTAGE5 NA AL133372.2 AL079305.1 NA NA NA NA NA -CTAGE5--CTAGE5 BS_7G42J2SK 2.27612035723694 2.27612035723694 NA NA differentially expressed differentially expressed NA NA 14:39348977 14:39326864 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.16Mb]],duplication/non-canonical_splicing CTAGE5 NA CTAGE5 NA NA NA NA NA NA -CTAGE5--CTAGE5 BS_G63HYD6N 0.983776806135855 0.983776806135855 NA NA no change no change NA NA 14:39348977 14:39308449 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.16Mb]],duplication/non-canonical_splicing CTAGE5 NA CTAGE5 NA NA NA NA NA NA -CTAGE5--CTAGE5 BS_NGHK9RZP 1.35762033160175 1.35762033160175 NA NA no change no change NA NA 14:39348977 14:39308449 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.16Mb]],duplication/non-canonical_splicing CTAGE5 NA CTAGE5 NA NA NA NA NA NA -CTBP2--CCAR1 BS_4QW2S1Q8 1.01811578426575 0.0999823876854951 NA NA no change no change NA NA 10:125110990 10:68736876 ARRIBA other 6 2 high [INTRACHROMOSOMAL[chr10:56.19Mb]],inversion CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA -CTBP2--CCAR1 BS_4QW2S1Q8 1.01811578426575 0.0999823876854951 NA NA no change no change NA NA 10:125160319 10:68736876 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr10:56.19Mb]],inversion CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA -CTBP2--CCAR1 BS_4QW2S1Q8 1.01811578426575 0.0999823876854951 NA NA no change no change NA NA 10:125160827 10:68736876 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:56.19Mb]],inversion CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA -CTBP2--CCAR1 BS_MX23ZY0Y 2.3023979410894 1.37454799915113 NA NA differentially expressed no change NA NA 10:125110990 10:68736876 ARRIBA other 16 0 high [INTRACHROMOSOMAL[chr10:56.19Mb]],inversion CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA -CTBP2--CCAR1 BS_MX23ZY0Y 2.3023979410894 1.37454799915113 NA NA differentially expressed no change NA NA 10:125160319 10:68736876 ARRIBA other 9 0 high [INTRACHROMOSOMAL[chr10:56.19Mb]],inversion CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA -CTBP2--CCAR1 BS_MX23ZY0Y 2.3023979410894 1.37454799915113 NA NA differentially expressed no change NA NA 10:125088191 10:68736876 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr10:56.19Mb]],inversion CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA -CTBP2--CCAR1 BS_P9JP6JFA 0.791078273635251 -0.0675025812191853 NA NA no change no change NA NA 10:125110990 10:68736876 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr10:56.19Mb]],inversion CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA -CTBP2--CCAR1 BS_P9JP6JFA 0.791078273635251 -0.0675025812191853 NA NA no change no change NA NA 10:125160319 10:68736876 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:56.19Mb]],inversion CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA -CTBP2--MGMT BS_8MA5B8Y9 -0.657918195322064 -0.174458633435122 NA NA no change no change NA NA 10:125160319 10:129536241 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr10:4.31Mb]],inversion CTBP2 NA MGMT NA NA CosmicCensus NA NA TCGAFusion -CTBP2--MGMT BS_8MA5B8Y9 -0.657918195322064 -0.174458633435122 NA NA no change no change NA NA 10:125110990 10:129536241 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:4.31Mb]],inversion CTBP2 NA MGMT NA NA CosmicCensus NA NA TCGAFusion -CTBP2--MGMT BS_8MA5B8Y9 -0.657918195322064 -0.174458633435122 NA NA no change no change NA NA 10:125160319 10:129707895 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:4.31Mb]],inversion CTBP2 NA MGMT NA NA CosmicCensus NA NA TCGAFusion -CTBS(46277)/LINC01555(7473)--WDR3 BS_D9GEXXHX -0.663347132972565 2.8992306986329 -0.345967386970425 NA no change differentially expressed no change NA 1:84620757 1:117946086 ARRIBA other 4 2 high [],inversion CTBS LINC01555 WDR3 NA NA NA NA NA NA -CTBS(46277)/LINC01555(7473)--WDR3 BS_KR4MP5ET 1.67593552143038 3.60081139192949 -0.345967386970425 NA no change differentially expressed no change NA 1:84620757 1:117946086 ARRIBA other 3 0 medium [],inversion CTBS LINC01555 WDR3 NA NA NA NA NA NA -CTC1--OR1G1(7256)/AC090282.1(132) BS_WKESC3XN 0.0813189605179263 28.3666667255463 NA NA no change differentially expressed NA NA 17:8239794 17:3134837 ARRIBA other 3 1 medium [],deletion CTC1 NA OR1G1 AC090282.1 NA NA NA NA NA -CTDP1--SALL3(42749)/ATP9B(23859) BS_S5P8VTN5 1.42883598855421 3.42455365039177 NA 0.530837620110541 no change differentially expressed NA no change 18:79680261 18:79045426 ARRIBA frameshift 2 0 high [],inversion CTDP1 NA SALL3 ATP9B NA TranscriptionFactor NA NA NA -CTDSP1--CFLAR BS_G1Y281HX 2.45712612816046 1.48755185155247 NA NA differentially expressed no change NA NA 2:218403417 2:201138993 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr2:17.22Mb]],inversion/3'-3' CTDSP1 NA CFLAR NA NA Oncogene NA NA NA -CTDSP1--CFLAR BS_HHPA8NJ2 -0.717487697607462 0.513243984344517 NA NA no change no change NA NA 2:218403417 2:201138993 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr2:17.22Mb]],inversion/3'-3' CTDSP1 NA CFLAR NA NA Oncogene NA NA NA -CTDSP1--HMGB1P9(15247)/ARPC2(459) BS_5AF6ZNJF 3.80549403271738 -0.0886082698702636 NA 0.315573935184082 differentially expressed no change NA no change 2:218400157 2:218216635 ARRIBA frameshift 4 0 medium [],duplication CTDSP1 NA HMGB1P9 ARPC2 NA NA NA NA NA -CTDSP1--IMPDH1P10 BS_G1Y281HX 2.45712612816046 2.78255136133037 NA NA differentially expressed differentially expressed NA NA 2:218403417 2:201138993 ARRIBA frameshift 2 1 medium [GTEx,CCLE,INTRACHROMOSOMAL[chr2:17.26Mb]],inversion CTDSP1 NA IMPDH1P10 NA NA NA NA NA NA -CTDSP1--IMPDH1P10 BS_HHPA8NJ2 -0.717487697607462 3.47298945457703 NA NA no change differentially expressed NA NA 2:218403417 2:201138993 ARRIBA frameshift 3 0 high [GTEx,CCLE,INTRACHROMOSOMAL[chr2:17.26Mb]],inversion CTDSP1 NA IMPDH1P10 NA NA NA NA NA NA -CTDSP2--AC110760.3(78522)/AC093870.1(14402) BS_23W9EPFE 0.434467441747943 NA NA NA no change NA NA NA 12:57846372 4:75180465 ARRIBA frameshift 2 0 medium [],translocation CTDSP2 NA AC110760.3 AC093870.1 NA NA NA NA NA -CTDSPL2--AC120338.1(283046)/VCX(68017) BS_NGHK9RZP 2.91800418864295 NA NA -0.91724379497786 differentially expressed NA NA no change 15:44486700 X:7774245 ARRIBA frameshift 6 0 high [],translocation CTDSPL2 NA AC120338.1 VCX NA NA NA NA NA -CTDSPL2--AP004607.5 BS_W60RQAKK 3.6302925232255 NA NA NA differentially expressed NA NA NA 15:44459200 11:90071696 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr15--chr11]],translocation CTDSPL2 NA AP004607.5 NA NA NA NA NA NA -CTIF--AC068112.1(125765)/LINC01912(18197) BS_H1ZS5FMZ -1.60638615579452 NA NA NA no change NA NA NA 18:48670744 18:68240142 ARRIBA frameshift 4 0 medium [],inversion CTIF NA AC068112.1 LINC01912 Oncogene NA NA NA NA -CTIF--MSRB3 BS_1A6MQ9ZA -4.30741189747172 0.489445650295316 NA NA differentially expressed no change NA NA 18:48711695 12:65299517 ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr18--chr12]],translocation/5'-5' CTIF NA MSRB3 NA Oncogene NA NA NA NA -CTNNB1--LINC01572 BS_TZVFR600 1.03207401559984 10.9676878848193 NA NA no change differentially expressed NA NA 3:41227352 16:72540611 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr3--chr16]],translocation CTNNB1 NA LINC01572 NA CosmicCensus, Oncogene NA NA NA NA -CTNNB1--LINC01572 BS_TZVFR600 1.03207401559984 10.9676878848193 NA NA no change differentially expressed NA NA 3:41227352 16:72523415 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr3--chr16]],translocation CTNNB1 NA LINC01572 NA CosmicCensus, Oncogene NA NA NA NA -CTNNBL1--VAPB BS_RCCN63K6 0.532869003813447 0.613862841282557 NA NA no change no change NA NA 20:37694152 20:58440907 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr20:20.52Mb]],deletion CTNNBL1 NA VAPB NA NA NA NA NA NA -CTNND1--KHDRBS1 BS_JK0VPG1T 4.73545375243183 0.836902696097752 NA NA differentially expressed no change NA NA 11:57815500 1:32038552 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr11--chr1]],translocation CTNND1 NA KHDRBS1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -CTNND2--RPS17P11(98046)/MFSD4BP1(198650) BS_B1C6GZ84 0.300610538947561 -0.180133778386322 NA NA no change no change NA NA 5:11564944 5:52380905 ARRIBA frameshift 2 1 medium [],duplication CTNND2 NA RPS17P11 MFSD4BP1 CosmicCensus, Oncogene NA NA NA NA -CTPS2--CTPS2 BS_ZRM0W01M 0.123617039586975 0.123617039586975 NA NA no change no change NA NA X:16667514 X:16702941 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.12Mb]],duplication/non-canonical_splicing CTPS2 NA CTPS2 NA NA NA NA NA NA -CTSB--RNF19A BS_6VPKXXMR 0.915096499586039 1.0369202390839 NA NA no change no change NA NA 8:11845113 8:100335491 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr8:88.39Mb]],inversion/5'-5' CTSB NA RNF19A NA Oncogene NA NA NA NA -CTTN--PYGM BS_QWTE1CWR -0.996282486696477 -3.20323999899065 NA NA no change differentially expressed NA NA 11:70415717 11:64746987 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr11:5.64Mb]],inversion CTTN NA PYGM NA Oncogene NA NA NA NA -CTTNBP2--AC079791.1(320960)/LINC02476(204447) BS_ZV1P6W9C 3.05004628097368 NA NA NA differentially expressed NA NA NA 7:117745831 7:119500109 ARRIBA frameshift 4 0 high [],duplication CTTNBP2 NA AC079791.1 LINC02476 NA NA NA NA NA -CTTNBP2--ANKRD7(371265)/GTF3AP6(12667) BS_6DCSD5Y6 6.06964331817141 1.74075638556917 NA 195.395759155843 differentially expressed no change NA differentially expressed 7:117734913 7:118867436 ARRIBA frameshift 8 0 medium [],duplication CTTNBP2 NA ANKRD7 GTF3AP6 NA NA NA NA NA -CTTNBP2--GTF3AP6(9357)/AC092098.1(59741) BS_6DCSD5Y6 6.06964331817141 195.395759155843 NA NA differentially expressed differentially expressed NA NA 7:117734913 7:118890645 ARRIBA frameshift 17 0 high [],duplication CTTNBP2 NA GTF3AP6 AC092098.1 NA NA NA NA NA -CTTNBP2NL--ERICH3 BS_84XCR9GG 6.14917361496362 -1.47853553984616 NA NA differentially expressed no change NA NA 1:112449172 1:74649315 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr1:37.72Mb]],inversion CTTNBP2NL NA ERICH3 NA NA NA NA NA NA -CU104787.1--U2(16630)/CU459211.1(186475) BS_2A5R9MEJ NA 0.624800416756262 NA 1.65469397222438 NA no change NA no change 22:11068174 22:10752913 ARRIBA other 3 0 medium [],inversion CU104787.1 NA U2 CU459211.1 NA NA NA NA NA -CU104787.1--U2(16630)/CU459211.1(186475) BS_6JHXXVR7 NA 1.9924049437084 NA 2.56826313573645 NA no change NA differentially expressed 22:11068154 22:10752913 ARRIBA other 4 0 medium [],inversion CU104787.1 NA U2 CU459211.1 NA NA NA NA NA -CU104787.1--U2(16630)/CU459211.1(186475) BS_MN5XVP5A NA 3.2087640193482 NA 1.88624881098024 NA differentially expressed NA no change 22:11068154 22:10752913 ARRIBA other 3 0 medium [],inversion CU104787.1 NA U2 CU459211.1 NA NA NA NA NA -CU104787.1--U2(16630)/CU459211.1(186475) BS_RCCN63K6 NA 3.35598848553521 NA 37.1877289661008 NA differentially expressed NA differentially expressed 22:11068174 22:10752913 ARRIBA other 5 0 medium [],inversion CU104787.1 NA U2 CU459211.1 NA NA NA NA NA -CU104787.1--U2(16630)/CU459211.1(186475) BS_VNWKNRY4 NA 2.267115911791 NA 3.01277433492226 NA differentially expressed NA differentially expressed 22:11068154 22:10752913 ARRIBA other 6 0 low [],inversion CU104787.1 NA U2 CU459211.1 NA NA NA NA NA -CUBN--CUBN BS_S0175QKX 2.49211952265106 2.49211952265106 NA NA differentially expressed differentially expressed NA NA 10:17100005 10:17104605 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.31Mb]],duplication/non-canonical_splicing CUBN NA CUBN NA Oncogene Oncogene NA NA NA -CUL2--HMCN1 BS_QWTE1CWR -1.20304396466931 0.537047598801023 NA NA no change no change NA NA 10:35090430 1:185909337 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr10--chr1]],translocation CUL2 NA HMCN1 NA TumorSuppressorGene NA NA NA NA -CUL2--LINC01724(138294)/KCNT2(26412) BS_WKESC3XN 0.573529986325618 NA NA 1.87501302299883 no change NA NA no change 10:35079800 1:196199367 ARRIBA other 6 1 medium [],translocation CUL2 NA LINC01724 KCNT2 TumorSuppressorGene NA NA NA NA -CUL2--NEBL BS_4B0BAVTX 1.15744338471905 -1.57496024490018 NA NA no change no change NA NA 10:35028810 10:21015533 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr10:13.83Mb]],inversion/5'-5' CUL2 NA NEBL NA TumorSuppressorGene NA NA NA NA -CUL2--NEK7 BS_QWTE1CWR -1.20304396466931 0.596296032900975 NA NA no change no change NA NA 10:35090430 1:198172093 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr10--chr1]],translocation/5'-5' CUL2 NA NEK7 NA TumorSuppressorGene Kinase, Kinase NA NA NA -CUX1--AL138752.2 BS_74FS6GMW 0.769530514325184 NA NA NA no change NA NA NA 7:102234240 9:38016131 ARRIBA frameshift 3 2 medium [INTERCHROMOSOMAL[chr7--chr9]],translocation CUX1 NA AL138752.2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -CUX1--CUX1 BS_6JHXXVR7 1.36116559281642 1.36116559281642 NA NA no change no change NA NA 7:101816093 7:102275663 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.47Mb]],inversion/3'-3' CUX1 NA CUX1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -CUX1--SHB BS_74FS6GMW 0.769530514325184 3.84830320936978 NA NA no change differentially expressed NA NA 7:102234240 9:38016131 ARRIBA frameshift 3 2 medium [INTERCHROMOSOMAL[chr7--chr9]],translocation CUX1 NA SHB NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -CUX1--SPAM1 BS_6JHXXVR7 1.36116559281642 173.423139482319 NA NA no change differentially expressed NA NA 7:101816093 7:123949872 ARRIBA frameshift 12 0 medium [INTRACHROMOSOMAL[chr7:21.64Mb]],deletion CUX1 NA SPAM1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor Oncogene NA NA NA -CUX1--SSPO BS_WH8G4VFB 0.591245833292167 0.413209263116594 NA NA no change no change NA NA 7:102234240 7:149813630 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:47.49Mb]],deletion CUX1 NA SSPO NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -CUX1--SSPO BS_WH8G4VFB 0.591245833292167 0.413209263116594 NA NA no change no change NA NA 7:102234240 7:149812561 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:47.49Mb]],deletion CUX1 NA SSPO NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -CUX2--CUX2 BS_ZR96A4FH 0.45649639902395 0.45649639902395 NA NA no change no change NA NA 12:111298589 12:111293446 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.32Mb]],duplication/non-canonical_splicing CUX2 NA CUX2 NA TranscriptionFactor TranscriptionFactor NA NA NA -CUX2--MED13L BS_K2FHZGTK -0.684395726294581 2.6079077215546 NA NA no change differentially expressed NA NA 12:111084853 12:116237705 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:4.60Mb]],duplication/3'-3' CUX2 NA MED13L NA TranscriptionFactor NA NA NA NA -CXCR5--SLC35F2 BS_SXCZ3CXN -1.48711211518754 2.98964487423832 NA NA no change differentially expressed NA NA 11:118896245 11:107868278 ARRIBA other 9 1 medium [INTRACHROMOSOMAL[chr11:10.96Mb]],deletion/3'-3' CXCR5 NA SLC35F2 NA NA NA NA NA NA -CXXC5--MN1 BS_KSKZ9J7J 0.838702848899986 2.91046922078752 NA NA no change differentially expressed NA NA 5:139648845 22:27751096 ARRIBA other 9 0 high [INTERCHROMOSOMAL[chr5--chr22]],translocation CXXC5 NA MN1 NA TumorSuppressorGene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA -CYB5R4--CYB5R4 BS_470DYRJQ 1.48461917748328 1.48461917748328 NA NA no change no change NA NA 6:83924592 6:83864175 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA -CYB5R4--CYB5R4 BS_5PJCHF6V 2.35006330592135 2.35006330592135 NA NA differentially expressed differentially expressed NA NA 6:83924592 6:83864175 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA -CYB5R4--CYB5R4 BS_SFKZSJN1 1.2338580987085 1.2338580987085 NA NA no change no change NA NA 6:83924592 6:83864175 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA -CYB5R4--CYB5R4 BS_TDEFAPNH 1.1140643351292 1.1140643351292 NA NA no change no change NA NA 6:83924592 6:83864175 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA -CYB5R4--CYB5R4 BS_WCRKYV0T 0.699983675568324 0.699983675568324 NA NA no change no change NA NA 6:83924592 6:83864175 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA -CYB5R4--CYB5R4 BS_XJTW0P8P 0.83209862433368 0.83209862433368 NA NA no change no change NA NA 6:83924592 6:83864175 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA -CYB5R4--CYB5R4 BS_ZH1FBX50 -0.250499638447418 -0.250499638447418 NA NA no change no change NA NA 6:83926331 6:83864175 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA -CYB5R4--CYB5R4 BS_ZR96A4FH 0.699983675568324 0.699983675568324 NA NA no change no change NA NA 6:83926331 6:83864175 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA -CYSTM1--AC011379.2 BS_8PNA0V6R -1.61581502715951 NA NA NA no change NA NA NA 5:140194652 5:140164650 ARRIBA frameshift 1 2 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:+:[1591]],duplication CYSTM1 NA AC011379.2 NA NA NA NA NA NA -CYSTM1--NPTX2(111620)/RNU6-393P(53230) BS_4W68NV3M -3.50446538730732 1.81242684390398 NA NA differentially expressed no change NA NA 5:140194652 7:98741488 ARRIBA frameshift 4 0 high [],translocation CYSTM1 NA NPTX2 RNU6-393P NA NA NA NA NA -CYTH3--KDELR2(5682)/AC072052.1(869) BS_0WVJYM9R -0.233138010418295 1.85893376762504 NA NA no change no change NA NA 7:6187050 7:6489924 ARRIBA frameshift 2 2 high [],duplication CYTH3 NA KDELR2 AC072052.1 NA NA NA NA NA -CYYR1-AS1--CYYR1-AS1 BS_FEPRNEXX 9.28904063483102 9.28904063483102 NA NA differentially expressed differentially expressed NA NA 21:26552127 21:26550319 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.18Mb]],duplication/non-canonical_splicing CYYR1-AS1 NA CYYR1-AS1 NA NA NA NA NA NA -D2HGDH--PSME2P2(42179)/AL161421.1(160961) BS_YEW22W35 0.654571386943484 -0.0347927373253277 NA NA no change no change NA NA 2:241756014 13:48814006 ARRIBA frameshift 12 0 high [],translocation D2HGDH NA PSME2P2 AL161421.1 NA NA NA NA NA -DAAM1--FUT8 BS_K17VQECG 2.62989205386353 1.0576631080895 NA NA differentially expressed no change NA NA 14:59263660 14:65561337 ARRIBA frameshift 10 1 high [INTRACHROMOSOMAL[chr14:6.04Mb]],deletion DAAM1 NA FUT8 NA NA Oncogene NA NA NA -DAAM1--NUDT5 BS_F6Z5HFWH 0.87910757551325 -0.163011633367136 NA NA no change no change NA NA 14:59369976 10:12172867 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr14--chr10]],translocation DAAM1 NA NUDT5 NA NA NA NA NA NA -DAB1--DAB1 BS_9NJHQE9F 4.37500649050343 4.37500649050343 NA NA differentially expressed differentially expressed NA NA 1:57440497 1:57291166 ARRIBA other 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr1:1.55Mb]],inversion/3'-3' DAB1 NA DAB1 NA NA NA NA NA NA -DAB1--DAB1 BS_GG9W3J9Y 0.0649675777129732 0.0649675777129732 NA NA no change no change NA NA 1:57062884 1:57072414 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:1.55Mb]],duplication/non-canonical_splicing DAB1 NA DAB1 NA NA NA NA NA NA -DAB1--OMA1 BS_1JDG6JV5 0.980799639681389 0.273015899053962 NA NA no change no change NA NA 1:58506060 1:58539310 ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_1JDG6JV5 0.980799639681389 0.273015899053962 NA NA no change no change NA NA 1:58506060 1:58536741 ARRIBA other 7 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_1JDG6JV5 0.980799639681389 0.273015899053962 NA NA no change no change NA NA 1:58253807 1:58539310 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_1JDG6JV5 0.980799639681389 0.273015899053962 NA NA no change no change NA NA 1:58506060 1:58534331 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_1JDG6JV5 0.980799639681389 0.273015899053962 NA NA no change no change NA NA 1:58527261 1:58534331 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_258RRGDM 0.310295739273207 0.381552730041686 NA NA no change no change NA NA 1:58506060 1:58539310 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_258RRGDM 0.310295739273207 0.381552730041686 NA NA no change no change NA NA 1:58253807 1:58539310 ARRIBA other 2 2 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_258RRGDM 0.310295739273207 0.381552730041686 NA NA no change no change NA NA 1:58506060 1:58534331 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_258RRGDM 0.310295739273207 0.381552730041686 NA NA no change no change NA NA 1:58527261 1:58539310 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_258RRGDM 0.310295739273207 0.381552730041686 NA NA no change no change NA NA 1:58506060 1:58536741 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_258RRGDM 0.310295739273207 0.381552730041686 NA NA no change no change NA NA 1:58527261 1:58536741 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_4W1DBAN4 1.5571211895341 -0.271274839080434 NA NA no change no change NA NA 1:58253807 1:58539310 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_4W1DBAN4 1.5571211895341 -0.271274839080434 NA NA no change no change NA NA 1:58506060 1:58534331 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_4W1DBAN4 1.5571211895341 -0.271274839080434 NA NA no change no change NA NA 1:58506060 1:58536741 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_4W1DBAN4 1.5571211895341 -0.271274839080434 NA NA no change no change NA NA 1:58506060 1:58539310 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_9NJHQE9F 4.37500649050343 2.37490080095683 NA NA differentially expressed differentially expressed NA NA 1:58506060 1:58539310 ARRIBA other 12 2 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_9NJHQE9F 4.37500649050343 2.37490080095683 NA NA differentially expressed differentially expressed NA NA 1:58253807 1:58539310 ARRIBA other 3 6 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_9NJHQE9F 4.37500649050343 2.37490080095683 NA NA differentially expressed differentially expressed NA NA 1:58506060 1:58536741 ARRIBA other 7 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_9NJHQE9F 4.37500649050343 2.37490080095683 NA NA differentially expressed differentially expressed NA NA 1:58506060 1:58534331 ARRIBA other 7 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_9NJHQE9F 4.37500649050343 2.37490080095683 NA NA differentially expressed differentially expressed NA NA 1:58527261 1:58539310 ARRIBA frameshift 4 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_AMQGM1V9 2.0061102321458 -0.12098076974744 NA NA differentially expressed no change NA NA 1:58506060 1:58539310 ARRIBA other 8 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_AMQGM1V9 2.0061102321458 -0.12098076974744 NA NA differentially expressed no change NA NA 1:58506060 1:58534331 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_AMQGM1V9 2.0061102321458 -0.12098076974744 NA NA differentially expressed no change NA NA 1:57649592 1:58541609 ARRIBA other 1 3 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_AMQGM1V9 2.0061102321458 -0.12098076974744 NA NA differentially expressed no change NA NA 1:58253807 1:58539310 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_AMQGM1V9 2.0061102321458 -0.12098076974744 NA NA differentially expressed no change NA NA 1:58527261 1:58539310 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_AMQGM1V9 2.0061102321458 -0.12098076974744 NA NA differentially expressed no change NA NA 1:58506060 1:58536741 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_F8N6CFQE 2.05382861615967 0.539680250177188 NA NA differentially expressed no change NA NA 1:58506060 1:58539310 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_F8N6CFQE 2.05382861615967 0.539680250177188 NA NA differentially expressed no change NA NA 1:58506060 1:58536741 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_F8N6CFQE 2.05382861615967 0.539680250177188 NA NA differentially expressed no change NA NA 1:58253807 1:58539310 ARRIBA other 2 2 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_F8N6CFQE 2.05382861615967 0.539680250177188 NA NA differentially expressed no change NA NA 1:58506060 1:58534331 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_K5802F84 0.410150280911283 0.634663221874778 NA NA no change no change NA NA 1:58506060 1:58539310 ARRIBA other 9 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_K5802F84 0.410150280911283 0.634663221874778 NA NA no change no change NA NA 1:58506060 1:58534331 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_K5802F84 0.410150280911283 0.634663221874778 NA NA no change no change NA NA 1:58253807 1:58539310 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_K5802F84 0.410150280911283 0.634663221874778 NA NA no change no change NA NA 1:58506060 1:58536741 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_K5802F84 0.410150280911283 0.634663221874778 NA NA no change no change NA NA 1:58527261 1:58536741 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_K5802F84 0.410150280911283 0.634663221874778 NA NA no change no change NA NA 1:58527261 1:58539310 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_VMMJYN8Z 0.39876264109237 0.647497369907782 NA NA no change no change NA NA 1:58506060 1:58539310 ARRIBA other 13 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_VMMJYN8Z 0.39876264109237 0.647497369907782 NA NA no change no change NA NA 1:58506060 1:58536741 ARRIBA other 9 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_VMMJYN8Z 0.39876264109237 0.647497369907782 NA NA no change no change NA NA 1:58506060 1:58534331 ARRIBA other 9 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_VMMJYN8Z 0.39876264109237 0.647497369907782 NA NA no change no change NA NA 1:58253807 1:58539310 ARRIBA other 1 5 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_VMMJYN8Z 0.39876264109237 0.647497369907782 NA NA no change no change NA NA 1:58527261 1:58539310 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_VPMKHW9X 1.64376282213101 -0.23064187635012 NA NA no change no change NA NA 1:58506060 1:58539310 ARRIBA other 9 2 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_VPMKHW9X 1.64376282213101 -0.23064187635012 NA NA no change no change NA NA 1:58253807 1:58539310 ARRIBA other 2 2 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_VPMKHW9X 1.64376282213101 -0.23064187635012 NA NA no change no change NA NA 1:58506060 1:58536741 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_VPMKHW9X 1.64376282213101 -0.23064187635012 NA NA no change no change NA NA 1:58506060 1:58534331 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_W97QQYKQ 0.708126209055184 -0.138220065798316 NA NA no change no change NA NA 1:58506060 1:58539310 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_W97QQYKQ 0.708126209055184 -0.138220065798316 NA NA no change no change NA NA 1:58253807 1:58539310 ARRIBA other 2 3 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_W97QQYKQ 0.708126209055184 -0.138220065798316 NA NA no change no change NA NA 1:58506060 1:58536741 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_W97QQYKQ 0.708126209055184 -0.138220065798316 NA NA no change no change NA NA 1:58527261 1:58536741 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_W97QQYKQ 0.708126209055184 -0.138220065798316 NA NA no change no change NA NA 1:58506060 1:58534331 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_X16PENSA 1.33103606911384 0.485758461471659 NA NA no change no change NA NA 1:58253807 1:58539310 ARRIBA other 1 6 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_X16PENSA 1.33103606911384 0.485758461471659 NA NA no change no change NA NA 1:58506060 1:58539310 ARRIBA other 3 2 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_X16PENSA 1.33103606911384 0.485758461471659 NA NA no change no change NA NA 1:58506060 1:58536741 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_X16PENSA 1.33103606911384 0.485758461471659 NA NA no change no change NA NA 1:58506060 1:58534331 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_X16PENSA 1.33103606911384 0.485758461471659 NA NA no change no change NA NA 1:58527261 1:58539310 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_Z7Y2466H 1.24422987146006 1.17072477353942 NA NA no change no change NA NA 1:58506060 1:58539310 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_Z7Y2466H 1.24422987146006 1.17072477353942 NA NA no change no change NA NA 1:58506060 1:58536741 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_Z7Y2466H 1.24422987146006 1.17072477353942 NA NA no change no change NA NA 1:58253807 1:58539310 ARRIBA other 2 2 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_Z7Y2466H 1.24422987146006 1.17072477353942 NA NA no change no change NA NA 1:58527261 1:58539310 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB1--OMA1 BS_Z7Y2466H 1.24422987146006 1.17072477353942 NA NA no change no change NA NA 1:58506060 1:58534331 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion -DAB2IP--VAV1 BS_RCCN63K6 0.32246773083446 2.90692066131066 NA NA no change differentially expressed NA NA 9:121567228 19:6820702 ARRIBA frameshift 13 0 high [INTERCHROMOSOMAL[chr9--chr19]],translocation DAB2IP NA VAV1 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA NA -DACH2--DACH2 BS_4B0BAVTX -0.1882081446842 -0.1882081446842 NA NA no change no change NA NA X:86149108 X:86486628 ARRIBA frameshift 7 2 medium [SELFIE,INTRACHROMOSOMAL[chrX:0.68Mb]],inversion/3'-3' DACH2 NA DACH2 NA Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA -DACT1--AKAP6 BS_D9GEXXHX 2.63055344761131 2.41881141311073 NA NA differentially expressed differentially expressed NA NA 14:58641747 14:32433460 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr14:25.80Mb]],duplication DACT1 NA AKAP6 NA TumorSuppressorGene NA NA NA NA -DAD1--SLC7A7 BS_49VCQD19 -0.374128754371551 4.50104166848008 NA NA no change differentially expressed NA NA 14:22588947 14:22780051 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr14:0.18Mb]],duplication DAD1 NA SLC7A7 NA NA NA NA NA NA -DAG1--ERGIC1 BS_0SPCTBZY 0.34823301235886 1.25824703558475 NA NA no change no change NA NA 3:49533846 5:172931729 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr3--chr5]],translocation DAG1 NA ERGIC1 NA NA NA NA NA NA -DAP3--PRR5L BS_JS95PE0J 2.39101450361364 3.23412866233614 NA NA differentially expressed differentially expressed NA NA 1:155709824 11:36462342 ARRIBA frameshift 14 2 high [INTERCHROMOSOMAL[chr1--chr11]],translocation DAP3 NA PRR5L NA NA NA NA NA NA -DAPK3--AC008507.1(171480)/AC005597.1(10030) BS_AZN38B7V -1.62814533294773 NA NA 0.26289929171415 no change NA NA no change 19:3969674 19:30209636 ARRIBA frameshift 15 0 high [],inversion DAPK3 NA AC008507.1 AC005597.1 Kinase, TumorSuppressorGene, Kinase NA NA NA NA -DARS--AC124657.1 BS_4B0BAVTX 1.97570362886769 NA NA NA no change NA NA NA 2:135961396 11:30044455 ARRIBA frameshift 13 1 high [INTERCHROMOSOMAL[chr2--chr11]],translocation DARS NA AC124657.1 NA NA NA NA NA NA -DAW1--ZNF609 BS_H0QWRJE2 3.72986367775454 1.94623115953513 NA NA differentially expressed no change NA NA 2:227912469 15:64516838 ARRIBA frameshift 24 0 high [INTERCHROMOSOMAL[chr2--chr15]],translocation DAW1 NA ZNF609 NA NA TranscriptionFactor NA NA NA -DAW1--ZNF609 BS_TJTEF70D 0.726954556642898 1.65935389948097 NA NA no change no change NA NA 2:227912469 15:64516838 ARRIBA frameshift 25 4 high [INTERCHROMOSOMAL[chr2--chr15]],translocation DAW1 NA ZNF609 NA NA TranscriptionFactor NA NA NA -DCAF10--LINC00094 BS_A0DYVX9J 1.24203248260825 4.16794143645263 NA NA no change differentially expressed NA NA 9:37831730 9:134025334 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr9:96.16Mb]],inversion/3'-3' DCAF10 NA LINC00094 NA NA NA NA NA NA -DCAF17--EIF5B BS_RRAEQZ97 1.56009116537877 -0.889779384891926 NA NA no change no change NA NA 2:171453213 2:99364271 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr2:72.03Mb]],duplication DCAF17 NA EIF5B NA NA NA NA NA NA -DCDC1--DCDC1 BS_DRD9QXR5 2.645731489665 2.645731489665 NA NA differentially expressed differentially expressed NA NA 11:31064469 11:31065153 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.54Mb]],duplication/non-canonical_splicing DCDC1 NA DCDC1 NA NA NA NA NA NA -DCDC1--DCDC1 BS_M1T1K5WV 8.025642853183 8.025642853183 NA NA differentially expressed differentially expressed NA NA 11:31241450 11:31305777 ARRIBA in-frame 23 3 low [SELFIE,INTRACHROMOSOMAL[chr11:0.54Mb]],duplication/non-canonical_splicing DCDC1 NA DCDC1 NA NA NA NA NA NA -DCDC1--DCDC1 BS_MKM0EEN1 1.76403353324974 1.76403353324974 NA NA no change no change NA NA 11:31241450 11:31307908 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.54Mb]],duplication/non-canonical_splicing DCDC1 NA DCDC1 NA NA NA NA NA NA -DCDC1--DCDC1 BS_SDCNP7MW 8.88736126763859 8.88736126763859 NA NA differentially expressed differentially expressed NA NA 11:31241450 11:31305777 ARRIBA in-frame 14 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.54Mb]],duplication/non-canonical_splicing DCDC1 NA DCDC1 NA NA NA NA NA NA -DCDC1--DCDC1 BS_T1DVKKJB 2.97036101779562 2.97036101779562 NA NA differentially expressed differentially expressed NA NA 11:31064469 11:31065153 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.54Mb]],duplication/non-canonical_splicing DCDC1 NA DCDC1 NA NA NA NA NA NA -DCHS1--ABTB2 BS_MN5XVP5A 6.96627834328837 1.67673959547744 NA NA differentially expressed no change NA NA 11:6625597 11:34204690 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr11:27.50Mb]],duplication DCHS1 NA ABTB2 NA NA Oncogene NA NA NA -DCHS1--AC107973.1 BS_49FQXT2E 4.70803853136257 NA NA NA differentially expressed NA NA NA 11:6639817 11:29881482 ARRIBA frameshift 44 5 high [INTRACHROMOSOMAL[chr11:23.06Mb]],inversion DCHS1 NA AC107973.1 NA NA NA NA NA NA -DCHS1--AC107973.1 BS_49FQXT2E 4.70803853136257 NA NA NA differentially expressed NA NA NA 11:6655563 11:29881482 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:23.06Mb]],inversion DCHS1 NA AC107973.1 NA NA NA NA NA NA -DCHS2--LINC00682 BS_4QW2S1Q8 1.10490862874186 1.25366263113143 NA NA no change no change NA NA 4:154489304 4:41873201 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr4:112.35Mb]],deletion DCHS2 NA LINC00682 NA NA NA NA NA NA -DCLK2--DCLK2 BS_398KYV92 0.181453492689899 0.181453492689899 NA NA no change no change NA NA 4:150239875 4:150203795 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.18Mb]],duplication/non-canonical_splicing DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA -DCLK2--DCLK2 BS_HCP5C912 1.13625401292197 1.13625401292197 NA NA no change no change NA NA 4:150239875 4:150203795 ARRIBA frameshift 21 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.18Mb]],duplication/non-canonical_splicing DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA -DCLK2--DCLK2 BS_K5802F84 -0.131026901364242 -0.131026901364242 NA NA no change no change NA NA 4:150239875 4:150203795 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.18Mb]],duplication/non-canonical_splicing DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA -DCLK2--DCLK2 BS_KPT2WPHW 0.736772569797044 0.736772569797044 NA NA no change no change NA NA 4:150239875 4:150203795 ARRIBA frameshift 15 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.18Mb]],duplication/non-canonical_splicing DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA -DCLK2--DCLK2 BS_WCRKYV0T 0.212574443794768 0.212574443794768 NA NA no change no change NA NA 4:150239875 4:150203795 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr4:0.18Mb]],duplication/non-canonical_splicing DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA -DCLK2--DCLK2 BS_YB2RXRHT 1.22751115793762 1.22751115793762 NA NA no change no change NA NA 4:150239875 4:150203795 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.18Mb]],duplication/non-canonical_splicing DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA -DCN(10098)/AC007115.1(488)--CCER1 BS_Q9V7A95C 4.61740159029087 170.350406674511 NA NA differentially expressed differentially expressed NA NA 12:91193221 12:90905864 ARRIBA other 29 4 high [],inversion DCN AC007115.1 CCER1 NA TumorSuppressorGene NA NA NA NA -DCPS--AP000942.4(1088)/RNU6-952P(3837) BS_PN2CE34A 2.0747084726935 NA NA NA differentially expressed NA NA NA 11:126306744 11:102309885 ARRIBA frameshift 4 0 medium [],duplication DCPS NA AP000942.4 RNU6-952P NA NA NA NA NA -DCTN1--ALK BS_RRAEQZ97 -1.12737072329121 3.47344655536017 NA NA no change differentially expressed NA NA 2:74365075 2:29223528 ARRIBA in-frame 3 0 medium [ChimerPub,Cosmic,ChimerKB,ChimerSeq,INTRACHROMOSOMAL[chr2:44.44Mb]],deletion DCTN1 NA ALK NA CosmicCensus Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -DCX--DCX BS_C7N3J4NW 3.14632428944505 3.14632428944505 NA NA differentially expressed differentially expressed NA NA X:111330904 X:111333153 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.12Mb]],duplication/non-canonical_splicing DCX NA DCX NA NA NA NA NA NA -DDA1--ADGRE3 BS_1D6PZNKN -0.0942058676846006 3.06779258962344 NA NA no change differentially expressed NA NA 19:17315995 19:14647365 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr19:2.62Mb]],inversion DDA1 NA ADGRE3 NA NA NA NA NA NA -DDAH1--MMP16 BS_MA1A3GY0 -0.429825935610312 9.14325793831901 NA NA no change differentially expressed NA NA 1:85496166 8:88197306 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr1--chr8]],translocation DDAH1 NA MMP16 NA NA NA NA NA NA -DDHD1--DDHD1 BS_CREQ97QC 1.51964833461648 1.51964833461648 NA NA no change no change NA NA 14:53058477 14:53091932 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing DDHD1 NA DDHD1 NA NA NA NA NA NA -DDHD1--DDHD1 BS_R7HZCZ8B -0.435534553605036 -0.435534553605036 NA NA no change no change NA NA 14:53058477 14:53091932 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing DDHD1 NA DDHD1 NA NA NA NA NA NA -DDHD1--DDHD1 BS_ZR96A4FH 0.595638238356512 0.595638238356512 NA NA no change no change NA NA 14:53058477 14:53091932 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing DDHD1 NA DDHD1 NA NA NA NA NA NA -DDR2--ATF6 BS_KE56MMY0 6.20944198890505 3.72160032079889 NA NA differentially expressed differentially expressed NA NA 1:162655374 1:161943984 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr1:0.67Mb]],inversion/3'-3' DDR2 NA ATF6 NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase TranscriptionFactor NA NA NA -DDTL--AP000350.2(2381)/AP000350.1(8043) BS_1BWP5MCT 0.10340830399726 NA NA NA no change NA NA NA 22:23972219 22:23931955 ARRIBA other 6 0 low [],inversion DDTL NA AP000350.2 AP000350.1 NA NA NA NA NA -DDX1--AC008164.1(14467)/AC008069.1(71798) BS_RSRPX3S8 -0.94037686351241 NA NA -0.637085305131329 no change NA NA no change 2:15595553 2:16782022 ARRIBA frameshift 7 0 high [],deletion DDX1 NA AC008164.1 AC008069.1 Oncogene NA NA NA NA -DDX1--AC008164.1(9399)/AC008069.1(76866) BS_8GW1TMV2 -1.24019294766478 NA NA -0.637085305131329 no change NA NA no change 2:15595660 2:16776954 ARRIBA frameshift 3 3 medium [],deletion DDX1 NA AC008164.1 AC008069.1 Oncogene NA NA NA NA -DDX1--MYT1L(91455)/AC018685.2(219274) BS_H4B5Y6S0 0.0861249115014623 1.89002085221661 NA 1.81083354178763 no change no change NA no change 2:15607313 2:2422715 ARRIBA frameshift 3 0 high [],duplication DDX1 NA MYT1L AC018685.2 Oncogene TranscriptionFactor NA NA NA -DDX10--SNORD39(3621)/AP003049.2(87900) BS_9CA93S6D -0.168620715166579 NA NA NA no change NA NA NA 11:108723462 11:109267185 ARRIBA frameshift 4 0 medium [],deletion DDX10 NA SNORD39 AP003049.2 CosmicCensus, Oncogene NA NA NA NA -DDX31--AL354704.1(14923)/C2orf27AP2(81029) BS_A0DYVX9J 3.75284875267573 NA NA NA differentially expressed NA NA NA 9:132642004 9:30589935 ARRIBA frameshift 92 2 high [],inversion DDX31 NA AL354704.1 C2orf27AP2 NA NA NA NA NA -DDX39B--LRFN2 BS_GW0GKWMS -0.682331204289417 0.987247181010962 NA NA no change no change NA NA 6:31540322 6:40433131 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr6:8.85Mb]],duplication DDX39B NA LRFN2 NA NA NA NA NA NA -DDX6--XRRA1 BS_TRKH2SPE 2.99799814501874 1.78655152627141 NA NA differentially expressed no change NA NA 11:118756260 11:74863021 ARRIBA in-frame 5 2 high [INTRACHROMOSOMAL[chr11:43.80Mb]],deletion DDX6 NA XRRA1 NA CosmicCensus, Oncogene NA NA NA NA -DDX6--XRRA1 BS_TRKH2SPE 2.99799814501874 1.78655152627141 NA NA differentially expressed no change NA NA 11:118756260 11:74852082 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr11:43.80Mb]],deletion DDX6 NA XRRA1 NA CosmicCensus, Oncogene NA NA NA NA -DDX60--DDX60(7260)/DDX60L(30668) BS_ZV68CES9 3.62954120587086 3.62954120587086 NA 8.14998382625853 differentially expressed differentially expressed NA differentially expressed 4:168220655 4:168326067 ARRIBA frameshift 1 1 low [],duplication DDX60 NA DDX60 DDX60L NA NA NA NA NA -DDX60(6032)/DDX60L(31896)--DDX60L BS_ZV68CES9 3.62954120587086 8.14998382625853 8.14998382625853 NA differentially expressed differentially expressed differentially expressed NA 4:168324839 4:168458008 ARRIBA other 6 3 high [],duplication DDX60 DDX60L DDX60L NA NA NA NA NA NA -DDX60L--AL773545.1 BS_6JHXXVR7 3.19957955870281 NA NA NA differentially expressed NA NA NA 4:168453124 9:40140377 ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr4--chr9]],translocation/5'-5' DDX60L NA AL773545.1 NA NA NA NA NA NA -DDX60L--CPE BS_6JHXXVR7 3.19957955870281 -3.51099757840636 NA NA differentially expressed differentially expressed NA NA 4:168453124 4:165430821 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr4:2.86Mb]],inversion DDX60L NA CPE NA NA NA NA NA TCGAFusion -DEAF1--AP000593.2(255)/AP000593.1(28608) BS_B1C6GZ84 -0.550215465641146 NA NA NA no change NA NA NA 11:674536 11:72251543 ARRIBA frameshift 7 0 medium [],duplication DEAF1 NA AP000593.2 AP000593.1 TranscriptionFactor NA NA NA NA -DECR2--FAM138D(3089)/IQSEC3(25543) BS_G9XE3N9T -1.07656380942046 -0.383612832339367 NA -0.0758853580281961 no change no change NA no change 16:405825 12:41222 ARRIBA frameshift 2 0 low [],translocation DECR2 NA FAM138D IQSEC3 NA NA NA NA NA -DENND1A--TFAP4 BS_EJ9JKM1C 0.691264920917666 0.809297028668144 NA NA no change no change NA NA 9:123878951 16:4262701 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr9--chr16]],translocation DENND1A NA TFAP4 NA NA Oncogene, TranscriptionFactor NA NA NA -DENND1A--TFAP4 BS_YB07VF1X 0.328106568521772 0.894124524781412 NA NA no change no change NA NA 9:123878951 16:4262701 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr9--chr16]],translocation DENND1A NA TFAP4 NA NA Oncogene, TranscriptionFactor NA NA NA -DENND1B--DPT BS_WKESC3XN 2.37663792079585 -0.957371397168884 NA NA differentially expressed no change NA NA 1:197772868 1:168714109 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr1:28.78Mb]],inversion/5'-5' DENND1B NA DPT NA NA Oncogene NA NA NA -DENND1B--LAMC2 BS_QWTE1CWR 0.237861050105738 -0.634416821919037 NA NA no change no change NA NA 1:197772868 1:183207046 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:14.26Mb]],deletion/5'-5' DENND1B NA LAMC2 NA NA NA NA NA NA -DENND4C--DENND4C BS_G63HYD6N 1.03493061431908 1.03493061431908 NA NA no change no change NA NA 9:19357154 9:19350702 ARRIBA frameshift 5 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing DENND4C NA DENND4C NA NA NA NA NA NA -DENND4C--DENND4C BS_NGHK9RZP 1.20517599185018 1.20517599185018 NA NA no change no change NA NA 9:19357154 9:19350702 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing DENND4C NA DENND4C NA NA NA NA NA NA -DENND4C--IFT74(17839)/AL355432.1(21861) BS_A0DYVX9J 4.48650502939247 -2.25554028812654 NA NA differentially expressed differentially expressed NA NA 9:19305527 9:27080769 ARRIBA frameshift 32 2 high [],deletion DENND4C NA IFT74 AL355432.1 NA NA NA NA NA -DENND4C--TEK BS_A0DYVX9J 4.48650502939247 0.479492921976698 NA NA differentially expressed no change NA NA 9:19305527 9:27157831 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr9:7.74Mb]],deletion DENND4C NA TEK NA NA Oncogene, Kinase NA NA NA -DENND4C--TEK BS_A0DYVX9J 4.48650502939247 0.479492921976698 NA NA differentially expressed no change NA NA 9:19300331 9:27157831 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr9:7.74Mb]],deletion DENND4C NA TEK NA NA Oncogene, Kinase NA NA NA -DENND4C--TEK BS_A0DYVX9J 4.48650502939247 0.479492921976698 NA NA differentially expressed no change NA NA 9:19276479 9:27157831 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:7.74Mb]],deletion DENND4C NA TEK NA NA Oncogene, Kinase NA NA NA -DENND5A--AC068205.2 BS_49FQXT2E 0.436875304589583 NA NA NA no change NA NA NA 11:9264961 11:43679338 ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr11:34.38Mb]],duplication/5'-5' DENND5A NA AC068205.2 NA NA NA NA NA NA -DENND5A--DLG1 BS_M0QYNVK8 -0.388684260212514 0.172069786627534 NA NA no change no change NA NA 11:9178132 3:197194589 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr11--chr3]],translocation DENND5A NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA -DEPTOR--AC091114.1(81451)/AC016074.1(126231) BS_HZRM07TW -1.01098869896831 NA NA NA no change NA NA NA 8:119929938 8:125622824 ARRIBA frameshift 2 0 high [],deletion DEPTOR NA AC091114.1 AC016074.1 NA NA NA NA NA -DEPTOR--LINC01823(1082503)/AC062020.1(186116) BS_1D6PZNKN -0.625333332064146 NA NA -0.0610228709485396 no change NA NA no change 8:120009133 2:122879205 ARRIBA frameshift 3 0 high [],translocation DEPTOR NA LINC01823 AC062020.1 NA NA NA NA NA -DERL3(15597)/AP000350.5(1702)--STEAP3 BS_983Z6CA6 -0.0336327321476938 2.08365463275056 1.24527206511069 NA no change differentially expressed no change NA 22:23854725 2:119245489 ARRIBA other 4 0 medium [],translocation DERL3 AP000350.5 STEAP3 NA NA NA NA NA NA -DERL3(15597)/AP000350.5(1702)--STEAP3 BS_9XVACXP0 1.05513508793598 4.06316582634367 -0.501743029767981 NA no change differentially expressed no change NA 22:23854725 2:119245489 ARRIBA other 22 0 high [],translocation DERL3 AP000350.5 STEAP3 NA NA NA NA NA NA -DERL3(15597)/AP000350.5(1702)--STEAP3 BS_MVW01FPB -1.85117010588189 1.59400078389457 0.136414442907491 NA no change no change no change NA 22:23854725 2:119245489 ARRIBA other 5 0 medium [],translocation DERL3 AP000350.5 STEAP3 NA NA NA NA NA NA -DGKB--Y_RNA(49788)/AC093813.1(27536) BS_RB2S0KDF -0.169164044802887 9.20029628525851 NA NA no change differentially expressed NA NA 7:14718541 7:156236011 ARRIBA frameshift 2 0 medium [],inversion DGKB NA Y_RNA AC093813.1 Kinase NA NA NA NA -DGKI--C10orf99 BS_VA5T4KAA 3.51291067211345 2.74986330583558 NA NA differentially expressed differentially expressed NA NA 7:137599823 10:84182761 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr7--chr10]],translocation/5'-5' DGKI NA C10orf99 NA NA NA NA NA NA -DGKI--CLCN1 BS_GYA4V1RD 3.24470735308472 5.82212482478397 NA NA differentially expressed differentially expressed NA NA 7:137687743 7:143330772 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr7:5.47Mb]],inversion DGKI NA CLCN1 NA NA NA NA NA NA -DGKI--CLCN1 BS_GYA4V1RD 3.24470735308472 5.82212482478397 NA NA differentially expressed differentially expressed NA NA 7:137846462 7:143330772 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:5.47Mb]],inversion DGKI NA CLCN1 NA NA NA NA NA NA -DGKI--DGKI BS_044XZ8ST 2.22734534001905 2.22734534001905 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_13CGKADW 2.27673113261202 2.27673113261202 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_1G3WYEN3 2.61041020815046 2.61041020815046 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_1T19NFJ8 2.04315905310077 2.04315905310077 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 10 5 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_2A5R9MEJ 3.02101180234251 3.02101180234251 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_2XD3MNKD 1.97292137528926 1.97292137528926 NA NA no change no change NA NA 7:137463489 7:137609609 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_398KYV92 2.76451727202445 2.76451727202445 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_39CGACC7 0.941378832600207 0.941378832600207 NA NA no change no change NA NA 7:137463489 7:137609609 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_3MS8WVNR 3.36473257973306 3.36473257973306 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 69 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_3P20Q2C3 3.93383264245894 3.93383264245894 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 11 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_3PYESPHA 3.41976801079687 3.41976801079687 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_3T6X4BPC 4.43105057394606 4.43105057394606 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_49BQS7Z6 1.22415066384017 1.22415066384017 NA NA no change no change NA NA 7:137521866 7:137623554 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_4T0HPZDC 1.45322129994364 1.45322129994364 NA NA no change no change NA NA 7:137521866 7:137619940 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_5K3R0F5D 2.6086103050804 2.6086103050804 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_5YJEPPTP 2.12252045278578 2.12252045278578 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137609609 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_680K119G 1.38190610062566 1.38190610062566 NA NA no change no change NA NA 7:137463489 7:137609609 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_6MY8W3H0 3.09316297449517 3.09316297449517 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_6WP1FHTE 2.15881778704958 2.15881778704958 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_7BTZQKYY 2.49567724080654 2.49567724080654 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 20 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_7N0B2CY1 3.01659991506963 3.01659991506963 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_7XRN3CFX 2.0550266369654 2.0550266369654 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_912NX4Y0 2.79923179446024 2.79923179446024 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_92VDQ0NE 2.76451727202445 2.76451727202445 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_9Q6Z6VJC 2.25754938282841 2.25754938282841 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 3 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_9RT63JD9 3.83896863957031 3.83896863957031 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_A1VEGWTR 2.84941375626913 2.84941375626913 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_AG3D3435 1.83790358404384 1.83790358404384 NA NA no change no change NA NA 7:137521866 7:137609609 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_AJ6X83G5 4.47308995905337 4.47308995905337 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 7 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_AKRHBPNZ 2.62832182591914 2.62832182591914 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_AMQGM1V9 3.36473257973306 3.36473257973306 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 16 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_B1HVNV0T 3.31579502493887 3.31579502493887 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_B741RZY9 3.19678891144251 3.19678891144251 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_C7N3J4NW 4.52758613241432 4.52758613241432 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 25 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_CQSAJ7BF 4.10603884577711 4.10603884577711 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 19 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_CREQ97QC 2.46304892473037 2.46304892473037 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 5 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_CVGFNCBJ 2.65489576323433 2.65489576323433 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_DMZP9G1H 3.61952631455636 3.61952631455636 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 17 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_DRD9QXR5 1.65323742908855 1.65323742908855 NA NA no change no change NA NA 7:137521866 7:137623554 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_DVCQ8XDZ 3.23150997238887 3.23150997238887 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_EF775B3K 2.27673113261202 2.27673113261202 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_EHVYJAVA 2.32286914860591 2.32286914860591 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_FJZPQZ2C 1.5946844867935 1.5946844867935 NA NA no change no change NA NA 7:137463489 7:137609609 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_GS1KR5PK 1.66474763489542 1.66474763489542 NA NA no change no change NA NA 7:137463489 7:137469619 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_HCP5C912 3.04728323241962 3.04728323241962 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 33 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_JXNZYGCR 3.00922535005598 3.00922535005598 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_K5802F84 3.47686982828776 3.47686982828776 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 28 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_KPT2WPHW 3.35479002837806 3.35479002837806 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 13 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_KQ6ZW085 2.33527198799419 2.33527198799419 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_KX6J8TRK 3.25781931324242 3.25781931324242 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 35 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_M1PVEHCM 4.48025076810759 4.48025076810759 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 33 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_M4NVX721 2.44555997491053 2.44555997491053 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA in-frame 20 5 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_M8M56Z4Y 2.37203129689034 2.37203129689034 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137609609 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_M8WP5T16 2.29363042370692 2.29363042370692 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_MWWZBQ60 3.70515092548933 3.70515092548933 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_MY9D8XZ1 2.11564169992146 2.11564169992146 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_N1E0H8YQ 2.33114613978169 2.33114613978169 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_N210XMKR 2.41012249797863 2.41012249797863 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137609609 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_N6NE6B3W 3.12131896314154 3.12131896314154 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_NDN62H0S 2.94008928182008 2.94008928182008 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_NRPG5K4K 1.57977793850241 1.57977793850241 NA NA no change no change NA NA 7:137521866 7:137609609 ARRIBA frameshift 4 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_NT9NZYFD 2.69497723225199 2.69497723225199 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_NVKGSMXS 3.68936956207378 3.68936956207378 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_NYS8TRCB 1.61537107852184 1.61537107852184 NA NA no change no change NA NA 7:137463489 7:137609609 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_PQ7CQFYR 4.14521046369194 4.14521046369194 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_PZVHMSYN 3.79333185380429 3.79333185380429 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_QC3XCE6X 3.42939745624663 3.42939745624663 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_QF5VVZX5 3.31198117234313 3.31198117234313 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_QNAQGAV6 1.75180124223101 1.75180124223101 NA NA no change no change NA NA 7:137463489 7:137609609 ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_QV51J756 3.36597197455427 3.36597197455427 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 19 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_S0175QKX 2.41805123910627 2.41805123910627 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_SBFNFZ8B 3.03126899272239 3.03126899272239 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_SDA4RMMG 1.95310908268162 1.95310908268162 NA NA no change no change NA NA 7:137521866 7:137623554 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_TDEFAPNH 3.13247269137094 3.13247269137094 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_TG93XC55 3.48506431239096 3.48506431239096 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 21 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_VMMJYN8Z 2.68286225773829 2.68286225773829 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 21 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_VNE0ZPBS 3.24602237472914 3.24602237472914 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 13 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_VPMKHW9X 2.89056404624224 2.89056404624224 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_WCRKYV0T 4.29081457467613 4.29081457467613 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 49 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_WKESC3XN 3.15184515512938 3.15184515512938 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_X0F9AYEC 2.30412133670282 2.30412133670282 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137609609 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_YB2RXRHT 3.29793529288217 3.29793529288217 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 18 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_YMAJC22S 4.38137636260976 4.38137636260976 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 20 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_Z6BWR941 2.74441000251058 2.74441000251058 NA NA differentially expressed differentially expressed NA NA 7:137521866 7:137623554 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_ZH1FBX50 3.56186444686705 3.56186444686705 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--DGKI BS_ZR96A4FH 3.57531745107546 3.57531745107546 NA NA differentially expressed differentially expressed NA NA 7:137463489 7:137609609 ARRIBA frameshift 23 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA -DGKI--LRRC4 BS_593HEWBF 1.60357604798287 0.688187069079458 NA NA no change no change NA NA 7:137846462 7:128030996 ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr7:9.35Mb]],deletion DGKI NA LRRC4 NA NA TumorSuppressorGene NA NA NA -DHCR24--AC097488.1(221353)/ARHGAP24(6849) BS_YVMEEBKC -0.79607620074689 NA NA 1.60093896185837 no change NA NA no change 1:54850230 4:85468265 ARRIBA other 2 0 low [],translocation DHCR24 NA AC097488.1 ARHGAP24 NA NA NA NA NA -DHODH--ZNF708 BS_B9V8RGTA 3.42969704147759 0.816039761668446 NA NA differentially expressed no change NA NA 16:72025266 19:21298016 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr16--chr19]],translocation DHODH NA ZNF708 NA NA TranscriptionFactor NA NA NA -DHRS7B--CAMKK1 BS_4B0BAVTX 0.614474286947782 -1.21285203367993 NA NA no change no change NA NA 17:21172196 17:3862283 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr17:17.23Mb]],inversion DHRS7B NA CAMKK1 NA NA Kinase, Kinase NA NA NA -DHX35--DIAPH3 BS_7327SDAQ 0.772347400362295 6.30320518836887 NA NA no change differentially expressed NA NA 20:39010404 13:60093732 ARRIBA in-frame 10 0 high [INTERCHROMOSOMAL[chr20--chr13]],translocation DHX35 NA DIAPH3 NA NA NA NA NA NA -DIAPH2--NTRK2 BS_EBMCTR80 5.17194233513738 0.452138412044829 NA NA differentially expressed no change NA NA X:96965207 9:84867243 ARRIBA in-frame 13 0 high [INTERCHROMOSOMAL[chrX--chr9]],translocation DIAPH2 NA NTRK2 NA NA Oncogene, Kinase NA NA NA -DIAPH2--NTRK2 BS_EBMCTR80 5.17194233513738 0.452138412044829 NA NA differentially expressed no change NA NA X:96965207 9:84861040 ARRIBA in-frame 6 0 medium [INTERCHROMOSOMAL[chrX--chr9]],translocation DIAPH2 NA NTRK2 NA NA Oncogene, Kinase NA NA NA -DIAPH2--RN7SKP194(31173)/AL606530.1(178699) BS_C6ZZ3FY5 3.30474181677176 -0.0294627825494395 NA NA differentially expressed no change NA NA X:96949039 X:96441955 ARRIBA frameshift 5 0 high [],duplication DIAPH2 NA RN7SKP194 AL606530.1 NA NA NA NA NA -DIP2A--CCKBR(8419)/AC068733.2(16643) BS_MN5XVP5A -0.0713810292766357 -1.62085402774136 NA NA no change no change NA NA 21:46509376 11:6280546 ARRIBA frameshift 2 1 high [],translocation DIP2A NA CCKBR AC068733.2 NA NA NA NA NA -DIP2A--CCKBR(8419)/AC068733.2(16643) BS_RCCN63K6 0.179680045796701 -1.15138031251579 NA NA no change no change NA NA 21:46509376 11:6280546 ARRIBA frameshift 4 0 high [],translocation DIP2A NA CCKBR AC068733.2 NA NA NA NA NA -DIP2B--AC011604.2 BS_A0DYVX9J 2.05351175654022 NA NA NA differentially expressed NA NA NA 12:50741539 12:21089908 ARRIBA in-frame 6 0 high [],duplication DIP2B NA AC011604.2 NA NA NA NA NA NA -DIP2B--EBLN3P BS_W60RQAKK 1.70297800025779 NA NA NA no change NA NA NA 12:50741539 9:37086668 ARRIBA frameshift 8 1 high [INTERCHROMOSOMAL[chr12--chr9]],translocation DIP2B NA EBLN3P NA NA NA NA NA NA -DIP2B--SLCO1B7 BS_A0DYVX9J 2.05351175654022 32.6546053185392 NA NA differentially expressed differentially expressed NA NA 12:50741539 12:21089908 ARRIBA in-frame 6 0 high [INTRACHROMOSOMAL[chr12:29.41Mb]],duplication DIP2B NA SLCO1B7 NA NA NA NA NA NA -DIP2B--TEAD4 BS_TRKH2SPE 0.778986365607847 0.0874554267136117 NA NA no change no change NA NA 12:50505240 12:3011004 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr12:47.46Mb]],duplication DIP2B NA TEAD4 NA NA TranscriptionFactor NA NA NA -DIRC2--LRRC3B BS_FAQQ0GCQ 1.79898818141284 -1.99450136943218 NA NA no change no change NA NA 3:122872597 3:26709513 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr3:96.08Mb]],duplication DIRC2 NA LRRC3B NA Oncogene TumorSuppressorGene NA NA NA -DIRC2--LRRC3B BS_FAQQ0GCQ 1.79898818141284 -1.99450136943218 NA NA no change no change NA NA 3:122872597 3:26701225 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:96.08Mb]],duplication DIRC2 NA LRRC3B NA Oncogene TumorSuppressorGene NA NA NA -DIS3L2--DIS3L2 BS_FJZPQZ2C -0.295812380073898 -0.295812380073898 NA NA no change no change NA NA 2:232263440 2:232198527 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication/non-canonical_splicing DIS3L2 NA DIS3L2 NA NA NA NA NA NA -DISC1--DISC1 BS_QWTE1CWR 6.07832640261765 6.07832640261765 NA NA differentially expressed differentially expressed NA NA 1:231818517 1:231900746 ARRIBA frameshift 2 0 medium [SELFIE,INTRACHROMOSOMAL[chr1:0.41Mb]],inversion/3'-3' DISC1 NA DISC1 NA NA NA NA NA NA -DISC1--TSNAX-DISC1 BS_FW5ECXXK 1.5813512022051 -0.570019199621628 NA NA no change no change NA NA 1:231818517 1:231795242 ARRIBA frameshift 5 2 medium [INTRACHROMOSOMAL[chr1:0.19Mb]],duplication DISC1 NA TSNAX-DISC1 NA NA NA NA NA NA -DISC1--TSNAX-DISC1 BS_FW5ECXXK 1.5813512022051 -0.570019199621628 NA NA no change no change NA NA 1:231818517 1:231818329 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.19Mb]],duplication DISC1 NA TSNAX-DISC1 NA NA NA NA NA NA -DISC1--TSNAX-DISC1 BS_FW5ECXXK 1.5813512022051 -0.570019199621628 NA NA no change no change NA NA 1:231771070 1:231701955 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.19Mb]],duplication DISC1 NA TSNAX-DISC1 NA NA NA NA NA NA -DKK3--CSTF3 BS_KBT7MQ6H -0.124555892097447 1.11428773078287 NA NA no change no change NA NA 11:11998696 11:33141986 ARRIBA in-frame 31 0 high [INTRACHROMOSOMAL[chr11:21.07Mb]],duplication DKK3 NA CSTF3 NA TumorSuppressorGene NA NA NA NA -DKK3--CSTF3-AS1 BS_KBT7MQ6H -0.124555892097447 0.974532271174258 NA NA no change no change NA NA 11:11998696 11:33182808 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr11:21.15Mb]],duplication/5'-5' DKK3 NA CSTF3-AS1 NA TumorSuppressorGene NA NA NA NA -DLC1--NUDCD1 BS_HZRM07TW 4.19099465814845 2.20033562030468 NA NA differentially expressed differentially expressed NA NA 8:13132944 8:109296569 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr8:95.64Mb]],duplication DLC1 NA NUDCD1 NA TumorSuppressorGene, Oncogene NA NA NA NA -DLD--NRCAM BS_VA5T4KAA 1.89064216000293 1.08130496150473 NA NA no change no change NA NA 7:107893278 7:108150147 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:0.22Mb]],inversion DLD NA NRCAM NA NA TumorSuppressorGene, Oncogene NA NA NA -DLD--NRCAM BS_VA5T4KAA 1.89064216000293 1.08130496150473 NA NA no change no change NA NA 7:107903547 7:108160492 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:0.22Mb]],inversion DLD NA NRCAM NA NA TumorSuppressorGene, Oncogene NA NA NA -DLG1--LINC01063 BS_MN5XVP5A 0.329412945509222 0.180271355478027 NA NA no change no change NA NA 3:197059889 3:196631645 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr3:0.41Mb]],deletion DLG1 NA LINC01063 NA TumorSuppressorGene, Oncogene NA NA NA NA -DLG2--KCNQ1 BS_5PJCHF6V -0.707039354225303 0.151898137355288 NA NA no change no change NA NA 11:84534570 11:2587570 ARRIBA in-frame 6 0 high [INTRACHROMOSOMAL[chr11:80.61Mb]],inversion DLG2 NA KCNQ1 NA NA NA NA NA NA -DLGAP1--RAD23BP2(85017)/SEMA3A(206135) BS_SD8YBRBR 0.483460201654331 -0.0475430483628658 NA 7.683063841694 no change no change NA differentially expressed 18:4455083 7:83749642 ARRIBA other 3 0 low [],translocation DLGAP1 NA RAD23BP2 SEMA3A Oncogene NA NA NA NA -DLGAP2--DLGAP2 BS_39CGACC7 0.579264462755949 0.579264462755949 NA NA no change no change NA NA 8:1633046 8:1565683 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.97Mb]],duplication/non-canonical_splicing DLGAP2 NA DLGAP2 NA NA NA NA NA NA -DLGAP2--DLGAP2 BS_3MS8WVNR 0.569915717919581 0.569915717919581 NA NA no change no change NA NA 8:1633046 8:1626740 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.97Mb]],duplication/non-canonical_splicing DLGAP2 NA DLGAP2 NA NA NA NA NA NA -DLGAP4--CHD6 BS_7327SDAQ 1.47772215497688 3.4075334574222 NA NA no change differentially expressed NA NA 20:36500611 20:41527954 ARRIBA frameshift 11 2 high [INTRACHROMOSOMAL[chr20:4.87Mb]],deletion/5'-5' DLGAP4 NA CHD6 NA NA NA NA NA NA -DLGAP4--METTL22 BS_401R3KV0 0.251822704352114 -0.500536305591204 NA NA no change no change NA NA 20:36524341 16:8635371 ARRIBA frameshift 16 0 high [INTERCHROMOSOMAL[chr20--chr16]],translocation/5'-5' DLGAP4 NA METTL22 NA NA NA NA NA NA -DMXL1--SOX6 BS_8MA5B8Y9 1.11715645990541 5.01357913301443 NA NA no change differentially expressed NA NA 5:119203436 11:16476388 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr5--chr11]],translocation DMXL1 NA SOX6 NA NA TranscriptionFactor NA NA NA -DMXL2--DMXL2 BS_7G42J2SK 0.249969152535445 0.249969152535445 NA NA no change no change NA NA 15:51463379 15:51476719 ARRIBA frameshift 11 4 low [SELFIE,INTRACHROMOSOMAL[chr15:0.18Mb]],duplication/non-canonical_splicing DMXL2 NA DMXL2 NA NA NA NA NA NA -DMXL2--DMXL2 BS_CZ3NA7KV 0.27056568586997 0.27056568586997 NA NA no change no change NA NA 15:51463379 15:51476719 ARRIBA frameshift 5 2 low [SELFIE,INTRACHROMOSOMAL[chr15:0.18Mb]],duplication/non-canonical_splicing DMXL2 NA DMXL2 NA NA NA NA NA NA -DMXL2--DMXL2 BS_NGHK9RZP -0.774033552318792 -0.774033552318792 NA NA no change no change NA NA 15:51463379 15:51476719 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.18Mb]],duplication/non-canonical_splicing DMXL2 NA DMXL2 NA NA NA NA NA NA -DMXL2--DMXL2 BS_Q9V7A95C -1.99363537252164 -1.99363537252164 NA NA no change no change NA NA 15:51507134 15:51542507 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.18Mb]],duplication/non-canonical_splicing DMXL2 NA DMXL2 NA NA NA NA NA NA -DMXL2--IVNS1ABP BS_MGAMKKBD 1.6222060034248 6.35112905883184 NA NA no change differentially expressed NA NA 15:51622459 1:185301563 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr15--chr1]],translocation DMXL2 NA IVNS1ABP NA NA NA NA NA NA -DNAH1--QRICH1 BS_6JHXXVR7 -2.07633080507687 1.66183760081527 NA NA differentially expressed no change NA NA 3:52392894 3:49092456 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:3.22Mb]],deletion/3'-3' DNAH1 NA QRICH1 NA NA NA NA NA NA -DNAH10--DNAH10 BS_4FZS7TX4 1.71864324734347 1.71864324734347 NA NA no change no change NA NA 12:123859268 12:123853206 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA -DNAH10--DNAH10 BS_6H1C1ME9 0.750512640580689 0.750512640580689 NA NA no change no change NA NA 12:123820758 12:123818950 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA -DNAH10--DNAH10 BS_7B89YR6K 1.23736098003651 1.23736098003651 NA NA no change no change NA NA 12:123859268 12:123853206 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA -DNAH10--DNAH10 BS_7BTZQKYY 4.4806186563908 4.4806186563908 NA NA differentially expressed differentially expressed NA NA 12:123859268 12:123853206 ARRIBA frameshift 15 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA -DNAH10--DNAH10 BS_8RHPJ740 0.938146632323026 0.938146632323026 NA NA no change no change NA NA 12:123859268 12:123853206 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA -DNAH10--DNAH10 BS_8ZP3CBQA 1.30647313293681 1.30647313293681 NA NA no change no change NA NA 12:123903113 12:123893233 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA -DNAH10--DNAH10 BS_B741RZY9 4.08274395771967 4.08274395771967 NA NA differentially expressed differentially expressed NA NA 12:123859268 12:123853206 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA -DNAH10--DNAH10 BS_KX6J8TRK 1.0728882405284 1.0728882405284 NA NA no change no change NA NA 12:123859268 12:123853206 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA -DNAH10--DNAH10 BS_NGHK9RZP 1.40513390868134 1.40513390868134 NA NA no change no change NA NA 12:123870485 12:123857056 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA -DNAH10--DNAH10 BS_P78SMRBS 1.82999901729876 1.82999901729876 NA NA no change no change NA NA 12:123859268 12:123853206 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA -DNAH10--DNAH10 BS_PKK3BZRG 5.52016962582388 5.52016962582388 NA NA differentially expressed differentially expressed NA NA 12:123859268 12:123853206 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA -DNAH10--DNAH10 BS_SAA624A4 1.67681729459766 1.67681729459766 NA NA no change no change NA NA 12:123859268 12:123853206 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA -DNAH10--DNAH10 BS_WFD0GE5X 1.37288019279684 1.37288019279684 NA NA no change no change NA NA 12:123859268 12:123853206 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA -DNAH10--DNAH10 BS_WSQMAA33 1.82168788521891 1.82168788521891 NA NA no change no change NA NA 12:123859268 12:123857056 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA -DNAH11--DNAH11 BS_CZ3NA7KV 2.82506868835799 2.82506868835799 NA NA differentially expressed differentially expressed NA NA 7:21588636 7:21570069 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.36Mb]],duplication/non-canonical_splicing DNAH11 NA DNAH11 NA NA NA NA NA NA -DNAH11--DNAH11 BS_EK5PCKY0 2.49300066343714 2.49300066343714 NA NA differentially expressed differentially expressed NA NA 7:21582021 7:21570069 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.36Mb]],duplication/non-canonical_splicing DNAH11 NA DNAH11 NA NA NA NA NA NA -DNAH11--DNAH11 BS_NGHK9RZP 3.85468648684327 3.85468648684327 NA NA differentially expressed differentially expressed NA NA 7:21582021 7:21570069 ARRIBA in-frame 17 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.36Mb]],duplication/non-canonical_splicing DNAH11 NA DNAH11 NA NA NA NA NA NA -DNAH11--DNAH11 BS_XF0ZX2B3 1.6734607877109 1.6734607877109 NA NA no change no change NA NA 7:21582021 7:21570069 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.36Mb]],duplication/non-canonical_splicing DNAH11 NA DNAH11 NA NA NA NA NA NA -DNAH12--DNAH12 BS_0BXY0F9N 1.96793291917102 1.96793291917102 NA NA no change no change NA NA 3:57357176 3:57363786 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_49BQS7Z6 1.66997390490277 1.66997390490277 NA NA no change no change NA NA 3:57357176 3:57363786 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_67Z63A2K 3.15836835019767 3.15836835019767 NA NA differentially expressed differentially expressed NA NA 3:57301735 3:57357348 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_6H1C1ME9 1.48660189409336 1.48660189409336 NA NA no change no change NA NA 3:57301735 3:57357348 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_7G42J2SK 2.80362425352679 2.80362425352679 NA NA differentially expressed differentially expressed NA NA 3:57357176 3:57363786 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_9F09XV62 1.36113781421635 1.36113781421635 NA NA no change no change NA NA 3:57357176 3:57363786 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_AGS1HHGF 1.53091422873079 1.53091422873079 NA NA no change no change NA NA 3:57357176 3:57363786 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_F6Z5HFWH 1.49936288555004 1.49936288555004 NA NA no change no change NA NA 3:57357176 3:57363786 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_F9WKPDFG 2.64132532672567 2.64132532672567 NA NA differentially expressed differentially expressed NA NA 3:57382262 3:57385429 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_H0QWRJE2 1.3543116785316 1.3543116785316 NA NA no change no change NA NA 3:57357176 3:57363786 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_J8VX4D17 0.903828707165021 0.903828707165021 NA NA no change no change NA NA 3:57357176 3:57363786 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_JX449BF5 4.46915646668654 4.46915646668654 NA NA differentially expressed differentially expressed NA NA 3:57357176 3:57363786 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_P0W5VJH4 2.77691093929822 2.77691093929822 NA NA differentially expressed differentially expressed NA NA 3:57382262 3:57385429 ARRIBA in-frame 4 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_PKK3BZRG 5.90143396032613 5.90143396032613 NA NA differentially expressed differentially expressed NA NA 3:57501321 3:57502479 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_Q5WZYWCT 3.5530666591733 3.5530666591733 NA NA differentially expressed differentially expressed NA NA 3:57357176 3:57363786 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_QSTAVWGE 1.20531261020481 1.20531261020481 NA NA no change no change NA NA 3:57357176 3:57363786 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_SXCZ3CXN 1.25622018464498 1.25622018464498 NA NA no change no change NA NA 3:57382262 3:57385429 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_WYG77VVP 2.26667594626772 2.26667594626772 NA NA differentially expressed differentially expressed NA NA 3:57357176 3:57363786 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH12--DNAH12 BS_X67GTEM6 2.44893507334606 2.44893507334606 NA NA differentially expressed differentially expressed NA NA 3:57357176 3:57363786 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA -DNAH17--DNAH17 BS_W18SF91A 1.88948427724788 1.88948427724788 NA NA no change no change NA NA 17:78494036 17:78496032 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.15Mb]],duplication/non-canonical_splicing DNAH17 NA DNAH17 NA NA NA NA NA NA -DNAH3--DNAH3 BS_P0W5VJH4 5.60877269337877 5.60877269337877 NA NA differentially expressed differentially expressed NA NA 16:21062482 16:21087060 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr16:0.23Mb]],duplication/non-canonical_splicing DNAH3 NA DNAH3 NA NA NA NA NA NA -DNAH5--DNAH5 BS_NGHK9RZP 8.34443028847418 8.34443028847418 NA NA differentially expressed differentially expressed NA NA 5:13751078 5:13770980 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.25Mb]],duplication/non-canonical_splicing DNAH5 NA DNAH5 NA NA NA NA NA NA -DNAH5--DNAH5 BS_P0W5VJH4 4.04084150537835 4.04084150537835 NA NA differentially expressed differentially expressed NA NA 5:13844837 5:13864637 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.25Mb]],duplication/non-canonical_splicing DNAH5 NA DNAH5 NA NA NA NA NA NA -DNAH6--DNAH6 BS_7G42J2SK 5.91700827690652 5.91700827690652 NA NA differentially expressed differentially expressed NA NA 2:84781653 2:84706896 ARRIBA frameshift 14 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.30Mb]],duplication/non-canonical_splicing DNAH6 NA DNAH6 NA NA NA NA NA NA -DNAH6--DNAH6 BS_AG3D3435 4.99235736653396 4.99235736653396 NA NA differentially expressed differentially expressed NA NA 2:84727902 2:84703395 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.30Mb]],duplication/non-canonical_splicing DNAH6 NA DNAH6 NA NA NA NA NA NA -DNAH6--DNAH6 BS_EK5PCKY0 4.29578972668032 4.29578972668032 NA NA differentially expressed differentially expressed NA NA 2:84781653 2:84706896 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.30Mb]],duplication/non-canonical_splicing DNAH6 NA DNAH6 NA NA NA NA NA NA -DNAH6--DNAH6 BS_MKM0EEN1 2.2856648080494 2.2856648080494 NA NA differentially expressed differentially expressed NA NA 2:84816083 2:84796306 ARRIBA in-frame 9 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.30Mb]],duplication/non-canonical_splicing DNAH6 NA DNAH6 NA NA NA NA NA NA -DNAH6--DNAH6 BS_WH8G4VFB 3.39280889235406 3.39280889235406 NA NA differentially expressed differentially expressed NA NA 2:84816083 2:84805665 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.30Mb]],duplication/non-canonical_splicing DNAH6 NA DNAH6 NA NA NA NA NA NA -DNAH7--DNAH7 BS_49BQS7Z6 1.43294564355744 1.43294564355744 NA NA no change no change NA NA 2:195957261 2:195960945 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA -DNAH7--DNAH7 BS_60K3EQ9S -0.549692610969688 -0.549692610969688 NA NA no change no change NA NA 2:195957261 2:195960945 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA -DNAH7--DNAH7 BS_7G42J2SK 2.97168421347754 2.97168421347754 NA NA differentially expressed differentially expressed NA NA 2:195881795 2:195907009 ARRIBA in-frame 57 8 high [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA -DNAH7--DNAH7 BS_CXVJK2FY 0.562712711227927 0.562712711227927 NA NA no change no change NA NA 2:195816628 2:195853528 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA -DNAH7--DNAH7 BS_CZ3ER8DY 1.60377736557557 1.60377736557557 NA NA no change no change NA NA 2:195816628 2:195853528 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA -DNAH7--DNAH7 BS_CZ3NA7KV 2.00807107558803 2.00807107558803 NA NA differentially expressed differentially expressed NA NA 2:195881795 2:195907009 ARRIBA in-frame 9 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA -DNAH7--DNAH7 BS_EK5PCKY0 2.66671477059769 2.66671477059769 NA NA differentially expressed differentially expressed NA NA 2:195897667 2:195907009 ARRIBA in-frame 32 6 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA -DNAH7--DNAH7 BS_G63HYD6N 0.812454388601302 0.812454388601302 NA NA no change no change NA NA 2:195886141 2:195907009 ARRIBA in-frame 12 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA -DNAH7--DNAH7 BS_GMDQK06Q 0.896133819111686 0.896133819111686 NA NA no change no change NA NA 2:195906659 2:195926566 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA -DNAH7--DNAH7 BS_MT15SGJN 0.742988351230263 0.742988351230263 NA NA no change no change NA NA 2:195816628 2:195853528 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA -DNAH7--DNAH7 BS_NGHK9RZP 2.08675427700938 2.08675427700938 NA NA differentially expressed differentially expressed NA NA 2:195897667 2:195907009 ARRIBA in-frame 27 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA -DNAH7--DNAH7 BS_TG93XC55 -0.290040261338694 -0.290040261338694 NA NA no change no change NA NA 2:195957261 2:195987193 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA -DNAH7--DNAH7 BS_W80TJC27 1.8211246601129 1.8211246601129 NA NA no change no change NA NA 2:195897667 2:195907009 ARRIBA in-frame 12 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA -DNAH7--DNAH7 BS_XF0ZX2B3 1.43806441979524 1.43806441979524 NA NA no change no change NA NA 2:195897667 2:195907009 ARRIBA in-frame 7 4 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA -DNAH7--DNAH7 BS_XJTW0P8P -0.329299566836558 -0.329299566836558 NA NA no change no change NA NA 2:195936599 2:196001858 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA -DNAH7--DNAH7 BS_YMAJC22S -0.624220456764722 -0.624220456764722 NA NA no change no change NA NA 2:196047352 2:196058116 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA -DNAH7--DNAH7(325)/STK17B(64429) BS_4GTESTSE -0.441483133704173 -0.441483133704173 NA 6.59459232120723 no change no change NA differentially expressed 2:196047352 2:196069137 ARRIBA frameshift 3 0 high [],duplication DNAH7 NA DNAH7 STK17B NA NA NA Kinase NA -DNAH7--DNAH7(325)/STK17B(64429) BS_CZ82ANWP -1.05774418450758 -1.05774418450758 NA -0.181585101662527 no change no change NA no change 2:195972242 2:196069137 ARRIBA frameshift 1 1 medium [],duplication DNAH7 NA DNAH7 STK17B NA NA NA Kinase NA -DNAH9--DNAH9 BS_7BTZQKYY 5.25052862963271 5.25052862963271 NA NA differentially expressed differentially expressed NA NA 17:11905809 17:11891777 ARRIBA frameshift 84 10 high [SELFIE,INTRACHROMOSOMAL[chr17:0.37Mb]],duplication/non-canonical_splicing DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA -DNAH9--DNAH9 BS_B741RZY9 4.08693172674674 4.08693172674674 NA NA differentially expressed differentially expressed NA NA 17:11905809 17:11891777 ARRIBA frameshift 12 3 low [SELFIE,INTRACHROMOSOMAL[chr17:0.37Mb]],duplication/non-canonical_splicing DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA -DNAH9--DNAH9 BS_EK5PCKY0 2.32889939594603 2.32889939594603 NA NA differentially expressed differentially expressed NA NA 17:11640384 17:11608129 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.37Mb]],duplication/non-canonical_splicing DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA -DNAH9--DNAH9 BS_KX6J8TRK 2.5416482946521 2.5416482946521 NA NA differentially expressed differentially expressed NA NA 17:11905809 17:11891777 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.37Mb]],duplication/non-canonical_splicing DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA -DNAH9--DNAH9 BS_NGHK9RZP 3.00887536518982 3.00887536518982 NA NA differentially expressed differentially expressed NA NA 17:11640384 17:11632587 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.37Mb]],duplication/non-canonical_splicing DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA -DNAH9--DNAH9 BS_P0W5VJH4 1.11688844130067 1.11688844130067 NA NA no change no change NA NA 17:11883750 17:11880078 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.37Mb]],duplication/non-canonical_splicing DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA -DNAH9--DNAH9 BS_R7HZCZ8B 1.01305522805456 1.01305522805456 NA NA no change no change NA NA 17:11883750 17:11880078 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.37Mb]],duplication/non-canonical_splicing DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA -DNAJA4--HMG20A BS_AZN38B7V -2.57070034812216 3.53021239196671 NA NA differentially expressed differentially expressed NA NA 15:78264895 15:77458404 ARRIBA frameshift 29 2 high [INTRACHROMOSOMAL[chr15:0.78Mb]],duplication DNAJA4 NA HMG20A NA NA TranscriptionFactor NA NA NA -DNAJA4--HMG20A BS_AZN38B7V -2.57070034812216 3.53021239196671 NA NA differentially expressed differentially expressed NA NA 15:78264393 15:77458404 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr15:0.78Mb]],duplication DNAJA4 NA HMG20A NA NA TranscriptionFactor NA NA NA -DNAJB14--AC097460.1 BS_B9V8RGTA 1.53295346518482 NA NA NA no change NA NA NA 4:99946439 4:100181848 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr4:0.00Mb],LOCAL_INVERSION:-:+:[3280]],inversion DNAJB14 NA AC097460.1 NA NA NA NA NA NA -DNAJB14--DDIT4L BS_B9V8RGTA 1.53295346518482 -1.53936851479961 NA NA no change no change NA NA 4:99946439 4:100181848 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr4:0.24Mb]],inversion/5'-5' DNAJB14 NA DDIT4L NA NA NA NA NA NA -DNAJC2--BMT2 BS_4QW2S1Q8 1.34645867219956 NA NA NA no change NA NA NA 7:103337736 7:112822186 ARRIBA frameshift 6 2 high [INTRACHROMOSOMAL[chr7:9.47Mb]],inversion/5'-5' DNAJC2 NA BMT2 NA NA NA NA NA NA -DNAJC25--ERGIC1 BS_VNWKNRY4 -0.369510596671331 0.789861053527978 NA NA no change no change NA NA 9:111640748 5:172897002 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr9--chr5]],translocation DNAJC25 NA ERGIC1 NA NA NA NA NA NA -DNAJC25--ZNF367 BS_BKQZ550R -1.69513676195163 1.00404178396865 NA NA no change no change NA NA 9:111631743 9:96398763 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr9:15.21Mb]],duplication/5'-5' DNAJC25 NA ZNF367 NA NA TranscriptionFactor NA NA NA -DNAJC25-GNG10--ZNF367 BS_BKQZ550R -1.57286385797839 1.00404178396865 NA NA no change no change NA NA 9:111631743 9:96398763 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr9:15.21Mb]],duplication/5'-5' DNAJC25-GNG10 NA ZNF367 NA NA TranscriptionFactor NA NA NA -DNAJC5--ARFGAP1 BS_KZPR01BD 0.581072157555903 -1.5476964120493 NA NA no change no change NA NA 20:63931022 20:63281291 ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr20:0.61Mb]],duplication DNAJC5 NA ARFGAP1 NA NA NA NA NA NA -DNAJC5--ARFGAP1 BS_KZPR01BD 0.581072157555903 -1.5476964120493 NA NA no change no change NA NA 20:63931022 20:63282819 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr20:0.61Mb]],duplication DNAJC5 NA ARFGAP1 NA NA NA NA NA NA -DNAJC6--SGIP1 BS_TRKH2SPE -1.65191002785984 1.77795439850962 NA NA no change no change NA NA 1:65413723 1:66725742 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:1.12Mb]],duplication DNAJC6 NA SGIP1 NA Oncogene NA NA NA NA -DNASE2--CACNA1A BS_QRDT19KS -0.148725173716568 1.10834821188162 NA NA no change no change NA NA 19:12880802 19:13262833 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr19:0.32Mb]],duplication DNASE2 NA CACNA1A NA NA NA NA NA NA -DNASE2--GNB1L BS_K17VQECG 3.01622907318099 1.26101304306786 NA NA differentially expressed no change NA NA 19:12881290 22:19788960 ARRIBA frameshift 13 0 high [INTERCHROMOSOMAL[chr19--chr22]],translocation DNASE2 NA GNB1L NA NA NA NA NA NA -DNHD1--AC006299.1 BS_49FQXT2E -0.945338054653288 NA NA NA no change NA NA NA 11:6497450 11:22900551 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr11:16.24Mb]],duplication DNHD1 NA AC006299.1 NA NA NA NA NA NA -DNHD1--NLRP14 BS_49FQXT2E -0.945338054653288 15.6102558606078 NA NA no change differentially expressed NA NA 11:6497450 11:7038566 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr11:0.43Mb]],inversion/3'-3' DNHD1 NA NLRP14 NA NA NA NA NA NA -DNM1L--FGD4 BS_QC3XCE6X -0.0672928152432467 4.30028046019742 NA NA no change differentially expressed NA NA 12:32701562 12:32625654 ARRIBA frameshift 4 0 medium [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[33150]],duplication DNM1L NA FGD4 NA NA NA NA NA NA -DNM3--DNM3 BS_9DZ253JY -0.121745429464021 -0.121745429464021 NA NA no change no change NA NA 1:172038461 1:172032402 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing DNM3 NA DNM3 NA NA NA NA NA NA -DNMT1--CASP14(1168)/OR1I1(22750) BS_K17VQECG 2.28935593617197 0.210221232720497 NA 3.6822697743572 differentially expressed no change NA differentially expressed 19:10136121 19:15059461 ARRIBA frameshift 3 0 medium [],duplication DNMT1 NA CASP14 OR1I1 TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA -DNMT3A--LRP1B BS_MQCKXD60 5.72349495545616 -1.27027321386129 NA NA differentially expressed no change NA NA 2:25243962 2:141209199 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:114.89Mb]],inversion/5'-5' DNMT3A NA LRP1B NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA -DNTTIP1--SPO11 BS_4B0BAVTX 0.607911229065868 106.607788566181 NA NA no change differentially expressed NA NA 20:45795443 20:57334750 ARRIBA in-frame 23 0 high [INTRACHROMOSOMAL[chr20:11.52Mb]],deletion DNTTIP1 NA SPO11 NA TranscriptionFactor NA NA NA NA -DOCK1--AL355537.1(30892)/AL355537.2(11609) BS_YEW22W35 0.399692182637982 NA NA NA no change NA NA NA 10:127343746 10:128947163 ARRIBA frameshift 3 2 high [],deletion DOCK1 NA AL355537.1 AL355537.2 NA NA NA NA NA -DOCK1--COX15 BS_84XCR9GG 0.128648008418218 -0.451062650001604 NA NA no change no change NA NA 10:127410927 10:99725189 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr10:27.17Mb]],duplication/5'-5' DOCK1 NA COX15 NA NA NA NA NA NA -DOCK1--CUTC BS_84XCR9GG 0.128648008418218 -1.96242314572073 NA NA no change no change NA NA 10:127410927 10:99725189 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr10:27.15Mb]],duplication DOCK1 NA CUTC NA NA NA NA NA NA -DOCK10--DOCK10 BS_7G42J2SK 1.03874497476595 1.03874497476595 NA NA no change no change NA NA 2:224814320 2:224853122 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.28Mb]],duplication/non-canonical_splicing DOCK10 NA DOCK10 NA NA NA NA NA NA -DOCK10--GALNT13 BS_RRAEQZ97 1.89329138795322 2.50776527204478 NA NA no change differentially expressed NA NA 2:224916695 2:153880949 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr2:70.31Mb]],deletion/5'-5' DOCK10 NA GALNT13 NA NA NA NA NA NA -DOCK3--CCDC71 BS_QXKRN6CR -3.55534499603569 3.37662562107469 NA NA differentially expressed differentially expressed NA NA 3:50778758 3:49164260 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr3:1.51Mb]],inversion DOCK3 NA CCDC71 NA NA NA NA NA NA -DOCK4--AC005324.3 BS_49FQXT2E 0.7736017802992 NA NA NA no change NA NA NA 7:112206102 17:15615809 ARRIBA in-frame 6 1 high [INTERCHROMOSOMAL[chr7--chr17]],translocation DOCK4 NA AC005324.3 NA NA NA NA NA NA -DOCK4--AC005324.3 BS_49FQXT2E 0.7736017802992 NA NA NA no change NA NA NA 7:112206102 17:15607683 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr7--chr17]],translocation DOCK4 NA AC005324.3 NA NA NA NA NA NA -DOCK4--ADAM22 BS_WKESC3XN 1.98196198199129 0.172340859759622 NA NA no change no change NA NA 7:112206102 7:88075626 ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr7:23.52Mb]],inversion DOCK4 NA ADAM22 NA NA NA NA NA NA -DOCK4--BUB3P1(210335)/AC002386.1(116956) BS_6JHXXVR7 0.558604988893902 -0.0514166283917899 NA -0.145102930473852 no change no change NA no change 7:112206102 7:109205364 ARRIBA frameshift 132 16 high [],deletion DOCK4 NA BUB3P1 AC002386.1 NA NA NA NA NA -DOCK4--CDRT1 BS_49FQXT2E 0.7736017802992 4.24775371582327 NA NA no change differentially expressed NA NA 7:112206102 17:15615809 ARRIBA in-frame 6 1 high [INTERCHROMOSOMAL[chr7--chr17]],translocation DOCK4 NA CDRT1 NA NA NA NA NA NA -DOCK4--CDRT1 BS_49FQXT2E 0.7736017802992 4.24775371582327 NA NA no change differentially expressed NA NA 7:112206102 17:15607683 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr7--chr17]],translocation DOCK4 NA CDRT1 NA NA NA NA NA NA -DOCK4--HRAT17 BS_6JHXXVR7 0.558604988893902 NA NA NA no change NA NA NA 7:112206102 7:112954717 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr7:0.75Mb]],inversion/5'-5' DOCK4 NA HRAT17 NA NA NA NA NA NA -DOCK7--DOCK7 BS_F5BZSF3Q 1.58061034058988 1.58061034058988 NA NA no change no change NA NA 1:62618706 1:62625401 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing DOCK7 NA DOCK7 NA NA NA NA NA NA -DOCK7--DOCK7 BS_WRQHPSXQ 2.56734786177572 2.56734786177572 NA NA differentially expressed differentially expressed NA NA 1:62618706 1:62648544 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing DOCK7 NA DOCK7 NA NA NA NA NA NA -DOCK8--AL133271.1(20202)/Y_RNA(78542) BS_29006KEX 5.0790817888004 NA NA -0.162236315085263 differentially expressed NA NA no change 9:271729 X:106348026 ARRIBA frameshift 2 0 medium [],translocation DOCK8 NA AL133271.1 Y_RNA NA NA NA NA NA -DOCK8--snoU13(5381)/NHS(12006) BS_2R9TCR03 3.50157164195042 NA NA 2.87706325548407 differentially expressed NA NA differentially expressed 9:271729 X:17363414 ARRIBA frameshift 2 0 high [],translocation DOCK8 NA snoU13 NHS NA NA NA NA NA -DOCK8--snoU13(5381)/NHS(12006) BS_YMAJC22S 2.14922789387605 NA NA 1.4557998734348 differentially expressed NA NA no change 9:271729 X:17363414 ARRIBA frameshift 4 0 high [],translocation DOCK8 NA snoU13 NHS NA NA NA NA NA -DOK5--DOK5 BS_196BBNEJ 1.59227785411631 1.59227785411631 NA NA no change no change NA NA 20:54610523 20:54554933 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA -DOK5--DOK5 BS_258RRGDM 1.50431162044207 1.50431162044207 NA NA no change no change NA NA 20:54610523 20:54554933 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA -DOK5--DOK5 BS_7BTZQKYY 1.08416545799739 1.08416545799739 NA NA no change no change NA NA 20:54610523 20:54554933 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA -DOK5--DOK5 BS_7N0B2CY1 0.914490598602531 0.914490598602531 NA NA no change no change NA NA 20:54610523 20:54554933 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA -DOK5--DOK5 BS_AG3D3435 1.52144225969361 1.52144225969361 NA NA no change no change NA NA 20:54610523 20:54554933 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA -DOK5--DOK5 BS_C05FKR8X 1.30320715288157 1.30320715288157 NA NA no change no change NA NA 20:54610523 20:54554933 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA -DOK5--DOK5 BS_HZ707C55 2.11686296298378 2.11686296298378 NA NA differentially expressed differentially expressed NA NA 20:54610523 20:54554933 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA -DOK5--DOK5 BS_N8J1DP02 0.704981768464597 0.704981768464597 NA NA no change no change NA NA 20:54610523 20:54554933 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA -DOK5--DOK5 BS_RHD7XPNP 1.74058282117889 1.74058282117889 NA NA no change no change NA NA 20:54610523 20:54554933 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA -DOK5--DOK5 BS_T4P3J13C 1.5837182146879 1.5837182146879 NA NA no change no change NA NA 20:54610523 20:54554933 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA -DOK5--DOK5 BS_WFD0GE5X 0.903538130491293 0.903538130491293 NA NA no change no change NA NA 20:54610523 20:54554933 ARRIBA in-frame 3 2 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA -DOK5--DOK5 BS_X67GTEM6 1.25228882617626 1.25228882617626 NA NA no change no change NA NA 20:54610523 20:54554933 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA -DOT1L--TMPRSS9 BS_8MA5B8Y9 1.33330842885476 7.78032397917278 NA NA no change differentially expressed NA NA 19:2206570 19:2391279 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr19:0.16Mb]],inversion/3'-3' DOT1L NA TMPRSS9 NA TranscriptionFactor NA NA NA NA -DPH7--ZCWPW1 BS_AZN38B7V -2.47229603794282 0.0343783739496144 NA NA differentially expressed no change NA NA 9:137578625 7:100409544 ARRIBA in-frame 7 0 high [INTERCHROMOSOMAL[chr9--chr7]],translocation DPH7 NA ZCWPW1 NA NA NA NA NA NA -DPH7--ZCWPW1 BS_AZN38B7V -2.47229603794282 0.0343783739496144 NA NA differentially expressed no change NA NA 9:137578625 7:100405093 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr9--chr7]],translocation DPH7 NA ZCWPW1 NA NA NA NA NA NA -DPM1--OSER1-AS1 BS_6DCSD5Y6 -0.020517426482431 1.78973576979787 NA NA no change no change NA NA 20:50955186 20:44217234 ARRIBA frameshift 8 1 high [INTRACHROMOSOMAL[chr20:6.71Mb]],deletion/5'-5' DPM1 NA OSER1-AS1 NA NA NA NA NA NA -DPP10--DPP10 BS_3MS8WVNR -0.952222506059468 -0.952222506059468 NA NA no change no change NA NA 2:115525972 2:115309239 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:1.40Mb]],duplication/non-canonical_splicing DPP10 NA DPP10 NA NA NA NA NA NA -DPP3--SLC6A5 BS_B1C6GZ84 1.87902035486517 0.123341787989445 NA NA no change no change NA NA 11:66497477 11:20654713 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr11:45.82Mb]],duplication DPP3 NA SLC6A5 NA NA NA NA NA NA -DPP6--AC092681.1 BS_B3M5SGPA 0.961614566957078 NA NA NA no change NA NA NA 7:154053063 7:149891301 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:3.98Mb]],inversion DPP6 NA AC092681.1 NA NA NA NA NA NA -DPP6--AC092681.1 BS_CREQ97QC 0.909270675106852 NA NA NA no change NA NA NA 7:154053063 7:149891301 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:3.98Mb]],inversion DPP6 NA AC092681.1 NA NA NA NA NA NA -DPP6--AC092681.1 BS_HD4EJYE3 1.06406930153731 NA NA NA no change NA NA NA 7:154053063 7:149891301 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:3.98Mb]],inversion DPP6 NA AC092681.1 NA NA NA NA NA NA -DPP6--AC092681.1 BS_NR3P3GN2 0.244988938053368 NA NA NA no change NA NA NA 7:154053063 7:149891301 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:3.98Mb]],inversion DPP6 NA AC092681.1 NA NA NA NA NA NA -DPP6--ACTR3B BS_M7QJ8VF0 2.02780363612789 0.162898997319873 NA NA differentially expressed no change NA NA 7:154053063 7:152801621 ARRIBA in-frame 3 0 medium [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr7:1.03Mb]],duplication DPP6 NA ACTR3B NA NA NA NA NA NA -DPP6--ACTR3B BS_M7QJ8VF0 2.02780363612789 0.162898997319873 NA NA differentially expressed no change NA NA 7:154053063 7:152783187 ARRIBA frameshift 1 0 low [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr7:1.03Mb]],duplication DPP6 NA ACTR3B NA NA NA NA NA NA -DPP8--AC007240.1 BS_49FQXT2E 3.57317573391581 NA NA NA differentially expressed NA NA NA 15:65478880 2:10132510 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr15--chr2]],translocation/5'-5' DPP8 NA AC007240.1 NA NA NA NA NA NA -DPY19L2P2--DPY19L2P2 BS_X67GTEM6 2.14259896170876 2.14259896170876 NA NA differentially expressed differentially expressed NA NA 7:103210267 7:103243046 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.11Mb]],duplication/non-canonical_splicing DPY19L2P2 NA DPY19L2P2 NA NA NA NA NA NA -DPY19L3--AC020779.2 BS_AZN38B7V 3.30843533041252 NA NA NA differentially expressed NA NA NA 19:32453276 15:72140619 ARRIBA frameshift 10 0 high [INTERCHROMOSOMAL[chr19--chr15]],translocation DPY19L3 NA AC020779.2 NA NA NA NA NA NA -DPY19L3--CEACAMP11 BS_X2QTK3QD 1.23661772039173 -0.274777337442476 NA NA no change no change NA NA 19:32411372 19:43279019 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr19:10.79Mb]],inversion DPY19L3 NA CEACAMP11 NA NA NA NA NA NA -DPYSL2--PEBP4 BS_WKESC3XN 1.50364063491198 -0.135821392751962 NA NA no change no change NA NA 8:26634900 8:22927720 ARRIBA frameshift 33 8 high [INTRACHROMOSOMAL[chr8:3.51Mb]],inversion DPYSL2 NA PEBP4 NA NA NA NA NA NA -DPYSL2--PEBP4 BS_WKESC3XN 1.50364063491198 -0.135821392751962 NA NA no change no change NA NA 8:26634900 8:22920310 ARRIBA frameshift 3 2 medium [INTRACHROMOSOMAL[chr8:3.51Mb]],inversion DPYSL2 NA PEBP4 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_014EVM2D 0.444197307184955 0.444197307184955 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_063ERW0R -0.0342123004510082 -0.0342123004510082 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_06AMMCXR -0.765078099913023 -0.765078099913023 NA NA no change no change NA NA 2:26940172 2:26933258 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_0Y66ZBWE -0.213722929204318 -0.213722929204318 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 8 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_1JDG6JV5 -1.31898533029953 -1.31898533029953 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_1NPD7PVG 0.624167407959036 0.624167407959036 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 6 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_23W9EPFE 1.20699670819149 1.20699670819149 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_2ADZNNV4 -1.51374123388888 -1.51374123388888 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_2XD3MNKD 1.73539942581143 1.73539942581143 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_39CGACC7 0.372994012882881 0.372994012882881 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_3NWQXPQV 1.15105348721925 1.15105348721925 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 7 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_470DYRJQ -0.0235794460913058 -0.0235794460913058 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 7 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_4C4MZ4NT 0.463432195460892 0.463432195460892 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_5PEFNDCY -0.783510981610036 -0.783510981610036 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 9 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_7XRN3CFX 0.454779272489532 0.454779272489532 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_8J3B6ZB6 -0.414801744434874 -0.414801744434874 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_90B22NGP -0.075762631405771 -0.075762631405771 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_9DFBHHB5 -0.408924095712619 -0.408924095712619 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_CGB2WS2A -0.05212129759118 -0.05212129759118 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 6 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_CREQ97QC 0.877907599551673 0.877907599551673 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 9 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_CTR5X93B 0.313758527543794 0.313758527543794 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_FEPRNEXX 0.178564161350194 0.178564161350194 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_FWMJPKCV 0.374310627083211 0.374310627083211 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 7 4 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_M4NVX721 0.105947519144538 0.105947519144538 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_MBSTWZA6 -0.56673773648503 -0.56673773648503 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_N6NE6B3W 0.382837572090065 0.382837572090065 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 17 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_NB5XWMJT -0.491131398573197 -0.491131398573197 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_PQ7CQFYR 0.803295717399826 0.803295717399826 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_Q3TBCK4V -0.0147820391690419 -0.0147820391690419 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_QB7YGKN1 -0.0503197070258098 -0.0503197070258098 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 4 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_QXKRN6CR 0.716178758236977 0.716178758236977 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_SDA4RMMG -0.0449292652772796 -0.0449292652772796 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_SFKZSJN1 -0.284605341267891 -0.284605341267891 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_T55Y4Z0Y 0.0808504925018852 0.0808504925018852 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_TNRHHYNC -0.78042136589129 -0.78042136589129 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_VW85Q4XJ -0.311626498352451 -0.311626498352451 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_W18SF91A 1.36375835340588 1.36375835340588 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 13 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_WVW3W6ZB 0.92253600575049 0.92253600575049 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_X16PENSA 0.317194481466405 0.317194481466405 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_X4X1SFSE 0.329492259450992 0.329492259450992 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_X67GTEM6 -0.277135002262841 -0.277135002262841 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_YVMEEBKC -0.173696505276478 -0.173696505276478 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_YY5B2XDD -0.43737229907452 -0.43737229907452 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_Z6BWR941 -0.341427691331978 -0.341427691331978 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_Z6MC4N8D 0.487249369720258 0.487249369720258 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DPYSL5--DPYSL5 BS_ZR96A4FH 0.382837572090065 0.382837572090065 NA NA no change no change NA NA 2:26928323 2:26924887 ARRIBA in-frame 9 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA -DRG1--AC090193.2 BS_X2QTK3QD -2.72944124960523 NA NA NA differentially expressed NA NA NA 22:31420425 8:123563412 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr22--chr8]],translocation DRG1 NA AC090193.2 NA NA NA NA NA NA -DRG1--AC090193.2(11183)/RN7SKP155(8814) BS_X2QTK3QD -2.72944124960523 NA NA 23.8506160717443 differentially expressed NA NA differentially expressed 22:31420425 8:123579945 ARRIBA frameshift 3 0 high [],translocation DRG1 NA AC090193.2 RN7SKP155 NA NA NA NA NA -DSCAM--DSCAM BS_8Z3SCKB5 -0.54158981515457 -0.54158981515457 NA NA no change no change NA NA 21:40692810 21:40708771 ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA -DSCAM--DSCAM BS_9Q6Z6VJC 7.03729861198248 7.03729861198248 NA NA differentially expressed differentially expressed NA NA 21:40692810 21:40708771 ARRIBA in-frame 18 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA -DSCAM--DSCAM BS_M4NVX721 1.16125497747546 1.16125497747546 NA NA no change no change NA NA 21:40692810 21:40708771 ARRIBA in-frame 6 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA -DSCAM--DSCAM BS_M8WP5T16 2.53677052473984 2.53677052473984 NA NA differentially expressed differentially expressed NA NA 21:40692810 21:40708771 ARRIBA in-frame 17 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA -DSCAM--DSCAM BS_MF47B9ZW 2.88371299877233 2.88371299877233 NA NA differentially expressed differentially expressed NA NA 21:40124195 21:40144731 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA -DSCAM--DSCAM BS_MKM0EEN1 1.36035043253629 1.36035043253629 NA NA no change no change NA NA 21:40312081 21:40339415 ARRIBA in-frame 15 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA -DSCAM--DSCAM BS_PEP9NZXN 7.11634684191501 7.11634684191501 NA NA differentially expressed differentially expressed NA NA 21:40692810 21:40708771 ARRIBA in-frame 31 5 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA -DSCAM--DSCAM BS_TGW6HC4X 0.392797543561859 0.392797543561859 NA NA no change no change NA NA 21:40692810 21:40708771 ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA -DSCAM--DSCAM BS_W6AC5J3C 4.15080506517172 4.15080506517172 NA NA differentially expressed differentially expressed NA NA 21:40124195 21:40144731 ARRIBA in-frame 7 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA -DSCAM-IT1--DSCAM(3031)/YRDCP3(13824) BS_DRD9QXR5 11.4293231173214 1.45423466902183 NA -0.0294627825494395 differentially expressed no change NA no change 21:40621255 21:40850170 ARRIBA other 3 0 medium [],duplication DSCAM-IT1 NA DSCAM YRDCP3 NA NA NA NA NA -DSE--AL357080.1(303899)/AL355596.1(123086) BS_3F4FQJMR 4.55795358407249 NA NA NA differentially expressed NA NA NA 6:116399662 6:141323925 ARRIBA frameshift 6 4 medium [],deletion DSE NA AL357080.1 AL355596.1 NA NA NA NA NA -DSE--AL357080.1(303899)/AL355596.1(123086) BS_HC44ZA0V 5.16270983334412 NA NA NA differentially expressed NA NA NA 6:116399666 6:141323925 ARRIBA frameshift 5 0 high [],deletion DSE NA AL357080.1 AL355596.1 NA NA NA NA NA -DSE--AL357080.1(425983)/AL355596.1(1002) BS_3F4FQJMR 4.55795358407249 NA NA NA differentially expressed NA NA NA 6:116399662 6:141446009 ARRIBA frameshift 15 1 medium [],deletion DSE NA AL357080.1 AL355596.1 NA NA NA NA NA -DSE--AL357080.1(425983)/AL355596.1(1002) BS_HC44ZA0V 5.16270983334412 NA NA NA differentially expressed NA NA NA 6:116399662 6:141446009 ARRIBA frameshift 7 0 low [],deletion DSE NA AL357080.1 AL355596.1 NA NA NA NA NA -DST--DST BS_7G42J2SK -2.61866056788683 -2.61866056788683 NA NA differentially expressed differentially expressed NA NA 6:56485312 6:56501693 ARRIBA in-frame 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing DST NA DST NA Oncogene Oncogene NA NA NA -DST--DST BS_EK5PCKY0 -1.61822841127413 -1.61822841127413 NA NA no change no change NA NA 6:56485312 6:56501693 ARRIBA in-frame 7 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing DST NA DST NA Oncogene Oncogene NA NA NA -DST--DST BS_G63HYD6N -3.77116682185933 -3.77116682185933 NA NA differentially expressed differentially expressed NA NA 6:56485312 6:56501693 ARRIBA in-frame 7 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing DST NA DST NA Oncogene Oncogene NA NA NA -DST--DST BS_NGHK9RZP -1.1747757374861 -1.1747757374861 NA NA no change no change NA NA 6:56497379 6:56501693 ARRIBA in-frame 4 5 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing DST NA DST NA Oncogene Oncogene NA NA NA -DST--USP24 BS_DPF1CX0G 0.50811201209747 2.89923914185713 NA NA no change differentially expressed NA NA 6:56503997 1:55165950 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr6--chr1]],translocation DST NA USP24 NA Oncogene Oncogene NA NA NA -DSTYK--TNFRSF13C BS_M86ECPHK 0.431290336285335 5.20846970101954 NA NA no change differentially expressed NA NA 1:205211271 22:41926415 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr1--chr22]],translocation DSTYK NA TNFRSF13C NA Kinase NA NA NA NA -DTD1--AL109837.2(15312)/AL109837.1(51477) BS_B61168DE -1.84521348832723 NA NA NA no change NA NA NA 20:18596241 20:11556959 ARRIBA frameshift 3 0 high [],inversion DTD1 NA AL109837.2 AL109837.1 NA NA NA NA NA -DTX1--AC135584.1 BS_X23724NJ 1.52902513191634 NA NA NA no change NA NA NA 12:113058451 12:63153988 ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr12:49.90Mb]],inversion/3'-3' DTX1 NA AC135584.1 NA NA NA NA NA NA -DTX1--AC135584.1(4484)/HNRNPA1P69(112914) BS_X23724NJ 1.52902513191634 NA NA -0.0482847419793839 no change NA NA no change 12:113058451 12:63158490 ARRIBA frameshift 4 0 medium [],inversion DTX1 NA AC135584.1 HNRNPA1P69 NA NA NA NA NA -DTX2P1-UPK3BP1-PMS2P11--RASA4DP(13012)/FAM185A(45490) BS_34201DKZ 3.71525760142685 0.649734919761628 NA 0.417220647761363 differentially expressed no change NA no change 7:77018997 7:102703481 ARRIBA other 1 1 high [],inversion DTX2P1-UPK3BP1-PMS2P11 NA RASA4DP FAM185A NA NA NA NA NA -DTX4--AC127526.4 BS_SXCZ3CXN -0.16710650555504 NA NA NA no change NA NA NA 11:59195369 11:3545258 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr11:55.59Mb]],duplication/5'-5' DTX4 NA AC127526.4 NA NA NA NA NA NA -DUSP5--DOCK1 BS_84XCR9GG 2.19925460237813 0.128648008418218 NA NA differentially expressed no change NA NA 10:110502869 10:127403055 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr10:16.39Mb]],deletion DUSP5 NA DOCK1 NA TumorSuppressorGene NA NA NA NA -DUSP5--DOCK1 BS_84XCR9GG 2.19925460237813 0.128648008418218 NA NA differentially expressed no change NA NA 10:110510596 10:127403055 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr10:16.39Mb]],deletion DUSP5 NA DOCK1 NA TumorSuppressorGene NA NA NA NA -DUSP6--AC078777.1(7944)/LINC02421(30184) BS_Q9V7A95C 7.86967560595244 NA NA NA differentially expressed NA NA NA 12:89351640 12:67678863 ARRIBA frameshift 52 2 medium [],inversion DUSP6 NA AC078777.1 LINC02421 TumorSuppressorGene NA NA NA NA -DUSP8--AHNAK BS_B1C6GZ84 -1.48115730966727 1.04703134350942 NA NA no change no change NA NA 11:1556944 11:62536569 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr11:60.86Mb]],duplication DUSP8 NA AHNAK NA NA TumorSuppressorGene NA NA NA -DUSP8--AHNAK BS_B1C6GZ84 -1.48115730966727 1.04703134350942 NA NA no change no change NA NA 11:1558112 11:62536567 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:60.86Mb]],duplication DUSP8 NA AHNAK NA NA TumorSuppressorGene NA NA NA -DVL3--SIAH3 BS_B9V8RGTA 0.457282731641914 1.33759905031427 NA NA no change no change NA NA 3:184155978 13:45805017 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr3--chr13]],translocation/5'-5' DVL3 NA SIAH3 NA NA NA NA NA NA -DYM--AC091042.1(103047)/AC110597.1(3439) BS_QWTE1CWR 2.37531674141038 NA NA NA differentially expressed NA NA NA 18:49257010 18:67478352 ARRIBA frameshift 5 0 high [],duplication DYM NA AC091042.1 AC110597.1 Oncogene NA NA NA NA -DYM--ZBTB7C BS_QWTE1CWR 2.37531674141038 2.77928965607128 NA NA differentially expressed differentially expressed NA NA 18:49391593 18:48041123 ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chr18:0.63Mb]],deletion DYM NA ZBTB7C NA Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA -DYM--ZBTB7C BS_QWTE1CWR 2.37531674141038 2.77928965607128 NA NA differentially expressed differentially expressed NA NA 18:49257010 18:48165257 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr18:0.63Mb]],deletion DYM NA ZBTB7C NA Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA -DYM--ZBTB7C BS_QWTE1CWR 2.37531674141038 2.77928965607128 NA NA differentially expressed differentially expressed NA NA 18:49257010 18:48180477 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr18:0.63Mb]],deletion DYM NA ZBTB7C NA Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA -DYNC1H1--B2M BS_PGK832G2 -0.136044935813528 0.741947760480988 NA NA no change no change NA NA 14:101986764 15:44717843 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr14--chr15]],translocation DYNC1H1 NA B2M NA NA CosmicCensus, Oncogene NA NA NA -DYNC2H1--DYNC2H1 BS_CZ3NA7KV 1.80497301460007 1.80497301460007 NA NA no change no change NA NA 11:103134419 11:103117631 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.37Mb]],duplication/non-canonical_splicing DYNC2H1 NA DYNC2H1 NA NA NA NA NA NA -DYRK1A--AC092155.1 BS_MV6ASWV9 3.56870656549271 21.9165058586434 NA NA differentially expressed differentially expressed NA NA 21:37420384 2:62590577 ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr21--chr2]],translocation DYRK1A NA AC092155.1 NA Kinase, Oncogene, Kinase NA NA NA NA -DYRK1A--AC092155.1 BS_MV6ASWV9 3.56870656549271 21.9165058586434 NA NA differentially expressed differentially expressed NA NA 21:37420384 2:62631565 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr21--chr2]],translocation DYRK1A NA AC092155.1 NA Kinase, Oncogene, Kinase NA NA NA NA -DYRK1A--AC092155.1 BS_MV6ASWV9 3.56870656549271 21.9165058586434 NA NA differentially expressed differentially expressed NA NA 21:37367628 2:62590577 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr21--chr2]],translocation DYRK1A NA AC092155.1 NA Kinase, Oncogene, Kinase NA NA NA NA -DYRK2--AC008033.1(11825)/AC008033.2(960) BS_Q9V7A95C 17.7343407644179 NA NA NA differentially expressed NA NA NA 12:67649945 12:68486727 ARRIBA frameshift 3 0 medium [],inversion DYRK2 NA AC008033.1 AC008033.2 Kinase, Kinase NA NA NA NA -DYRK2--LINC02384 BS_Q9V7A95C 17.7343407644179 NA NA NA differentially expressed NA NA NA 12:67649945 12:68451552 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr12:0.67Mb]],inversion DYRK2 NA LINC02384 NA Kinase, Kinase NA NA NA NA -DYRK2--LINC02384 BS_Q9V7A95C 17.7343407644179 NA NA NA differentially expressed NA NA NA 12:67649945 12:68442141 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.67Mb]],inversion DYRK2 NA LINC02384 NA Kinase, Kinase NA NA NA NA -DYRK2--LINC02384 BS_Q9V7A95C 17.7343407644179 NA NA NA differentially expressed NA NA NA 12:67649182 12:68442141 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.67Mb]],inversion DYRK2 NA LINC02384 NA Kinase, Kinase NA NA NA NA -DYRK2--LINC02384 BS_Q9V7A95C 17.7343407644179 NA NA NA differentially expressed NA NA NA 12:67649945 12:68333664 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.67Mb]],inversion DYRK2 NA LINC02384 NA Kinase, Kinase NA NA NA NA -DYRK2--Metazoa_SRP(30993)/RAP1B(3710) BS_Q9V7A95C 17.7343407644179 -4.62305681474779 NA 3.23412918468502 differentially expressed differentially expressed NA differentially expressed 12:67649945 12:68607129 ARRIBA frameshift 7 0 medium [],inversion DYRK2 NA Metazoa_SRP RAP1B Kinase, Kinase NA NA Oncogene NA -ECE1--TNFRSF8 BS_RCCN63K6 2.43726734542774 3.96530702099717 NA NA differentially expressed differentially expressed NA NA 1:21345376 1:12135588 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:9.07Mb]],inversion ECE1 NA TNFRSF8 NA NA Oncogene NA NA NA -ECE1--TNFRSF8 BS_RCCN63K6 2.43726734542774 3.96530702099717 NA NA differentially expressed differentially expressed NA NA 1:21345376 1:12125951 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:9.07Mb]],inversion ECE1 NA TNFRSF8 NA NA Oncogene NA NA NA -ECE1--TNFRSF8 BS_RCCN63K6 2.43726734542774 3.96530702099717 NA NA differentially expressed differentially expressed NA NA 1:21345376 1:12138229 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:9.07Mb]],inversion ECE1 NA TNFRSF8 NA NA Oncogene NA NA NA -ECHDC1--SOGA3 BS_X59HSFGG 1.39804363994558 0.685626356133842 NA NA no change no change NA NA 6:127343336 6:127463594 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr6:0.09Mb],LOCAL_REARRANGEMENT:-:[94797]],inversion/5'-5' ECHDC1 NA SOGA3 NA NA NA NA NA NA -ECT2L--ECT2L BS_6H1C1ME9 5.47487446607479 5.47487446607479 NA NA differentially expressed differentially expressed NA NA 6:138889031 6:138842979 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA -ECT2L--ECT2L BS_7BTZQKYY 21.2442602557792 21.2442602557792 NA NA differentially expressed differentially expressed NA NA 6:138889031 6:138842979 ARRIBA frameshift 41 5 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA -ECT2L--ECT2L BS_8RHPJ740 7.17013584456416 7.17013584456416 NA NA differentially expressed differentially expressed NA NA 6:138889031 6:138842979 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA -ECT2L--ECT2L BS_8ZP3CBQA 8.43721410497273 8.43721410497273 NA NA differentially expressed differentially expressed NA NA 6:138889031 6:138842979 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA -ECT2L--ECT2L BS_AG3D3435 8.5995084526027 8.5995084526027 NA NA differentially expressed differentially expressed NA NA 6:138889031 6:138842979 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA -ECT2L--ECT2L BS_B741RZY9 12.8360252706434 12.8360252706434 NA NA differentially expressed differentially expressed NA NA 6:138889031 6:138842979 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA -ECT2L--ECT2L BS_P78SMRBS 8.64307137679426 8.64307137679426 NA NA differentially expressed differentially expressed NA NA 6:138889031 6:138842979 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA -ECT2L--ECT2L BS_X67GTEM6 5.9312163167896 5.9312163167896 NA NA differentially expressed differentially expressed NA NA 6:138889031 6:138842979 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA -EDN1--AQP10 BS_NJ4WPQVK -0.938936272791349 1.44051239774654 NA NA no change no change NA NA 6:12292503 1:154321105 ARRIBA frameshift 7 0 medium [INTERCHROMOSOMAL[chr6--chr1]],translocation/5'-5' EDN1 NA AQP10 NA NA NA NA NA NA -EEA1--RNU6-1329P(23665)/LINC02413(22808) BS_M1T1K5WV 4.93210610375618 NA NA NA differentially expressed NA NA NA 12:92891629 12:92976410 ARRIBA frameshift 3 0 medium [],duplication EEA1 NA RNU6-1329P LINC02413 TranscriptionFactor NA NA NA NA -EED--ADGRB3 BS_FW5ECXXK -0.99756619236814 0.346110024319294 NA NA no change no change NA NA 11:86277991 6:69233290 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr11--chr6]],translocation EED NA ADGRB3 NA TumorSuppressorGene, CosmicCensus NA NA NA NA -EEF1DP3--FAM110C(10641) BS_TXZ7KHTQ 2.13499657742324 0.746212374955449 NA NA differentially expressed no change NA NA 13:31946181 2:28173 ARRIBA other 26 2 high [],translocation EEF1DP3 NA FAM110C NA NA NA NA NA NA -EEF1DP3--FAM110C(34581)/AC079779.1(116118) BS_TXZ7KHTQ 2.13499657742324 0.746212374955449 NA NA differentially expressed no change NA NA 13:31946181 2:81451 ARRIBA other 4 0 high [],translocation EEF1DP3 NA FAM110C AC079779.1 NA NA NA NA NA -EEFSEC--CCND2 BS_W644VEVE 2.18462444914477 10.5051335938283 NA NA differentially expressed differentially expressed NA NA 3:128398611 12:4299858 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr3--chr12]],translocation EEFSEC NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA -EFCAB11--EFCAB11 BS_09Z7TC35 1.81908800550291 1.81908800550291 NA NA no change no change NA NA 14:89870643 14:89932627 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA -EFCAB11--EFCAB11 BS_0T17SY47 1.02456002305131 1.02456002305131 NA NA no change no change NA NA 14:89870643 14:89932627 ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA -EFCAB11--EFCAB11 BS_1EBQ3T20 2.90036974118275 2.90036974118275 NA NA differentially expressed differentially expressed NA NA 14:89931541 14:89954001 ARRIBA frameshift 12 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication/non-canonical_splicing EFCAB11 NA EFCAB11 NA NA NA NA NA NA -EFCAB11--EFCAB11 BS_5VQP0E6K 1.59477211248279 1.59477211248279 NA NA no change no change NA NA 14:89870643 14:89932627 ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA -EFCAB11--EFCAB11 BS_8F9BDWY4 0.762211365976918 0.762211365976918 NA NA no change no change NA NA 14:89870643 14:89932627 ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA -EFCAB11--EFCAB11 BS_AG3D3435 2.04860234672828 2.04860234672828 NA NA differentially expressed differentially expressed NA NA 14:89870643 14:89932627 ARRIBA frameshift 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA -EFCAB11--EFCAB11 BS_B741RZY9 4.38713980483674 4.38713980483674 NA NA differentially expressed differentially expressed NA NA 14:89870643 14:89932627 ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA -EFCAB11--EFCAB11 BS_G00FHF3Q 1.93241096118599 1.93241096118599 NA NA no change no change NA NA 14:89870643 14:89932627 ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA -EFCAB11--EFCAB11 BS_H3FE3TH9 0.630254280403904 0.630254280403904 NA NA no change no change NA NA 14:89870643 14:89932627 ARRIBA other 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA -EFCAB11--EFCAB11 BS_M4NVX721 0.177119522013346 0.177119522013346 NA NA no change no change NA NA 14:89870643 14:89932627 ARRIBA frameshift 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA -EFCAB11--EFCAB11 BS_MWWZBQ60 1.46630994706745 1.46630994706745 NA NA no change no change NA NA 14:89870643 14:89932627 ARRIBA other 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA -EFCAB11--EFCAB11 BS_NT9NZYFD 1.11876388437231 1.11876388437231 NA NA no change no change NA NA 14:89870643 14:89932627 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA -EFCAB11--EFCAB11 BS_QC3XCE6X 1.04577459824892 1.04577459824892 NA NA no change no change NA NA 14:89870643 14:89932627 ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA -EFCAB11--EFCAB11 BS_Z45HD492 1.02987901505723 1.02987901505723 NA NA no change no change NA NA 14:89870643 14:89932627 ARRIBA frameshift 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA -EFCAB11--EFCAB11 BS_ZR96A4FH 0.825891077851048 0.825891077851048 NA NA no change no change NA NA 14:89870643 14:89932627 ARRIBA frameshift 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA -EFCAB6--EFCAB6 BS_CHDGRYHJ 2.42436600110166 2.42436600110166 NA NA differentially expressed differentially expressed NA NA 22:43667104 22:43711623 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr22:0.28Mb]],duplication/non-canonical_splicing EFCAB6 NA EFCAB6 NA NA NA NA NA NA -EFCAB6--EFCAB6 BS_G63HYD6N 2.35934021124542 2.35934021124542 NA NA differentially expressed differentially expressed NA NA 22:43576297 22:43608600 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr22:0.28Mb]],duplication/non-canonical_splicing EFCAB6 NA EFCAB6 NA NA NA NA NA NA -EFCAB6--EFCAB6 BS_NGHK9RZP 5.24790106335862 5.24790106335862 NA NA differentially expressed differentially expressed NA NA 22:43554869 22:43590229 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr22:0.28Mb]],duplication/non-canonical_splicing EFCAB6 NA EFCAB6 NA NA NA NA NA NA -EFCAB8--EFCAB8 BS_KK5C8VCK 36.2551704922967 36.2551704922967 NA NA differentially expressed differentially expressed NA NA 20:32931336 20:32917301 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr20:0.10Mb]],duplication/non-canonical_splicing EFCAB8 NA EFCAB8 NA NA NA NA NA NA -EFNA4--RELA(2327)/RN7SL309P(30131) BS_CZ3ER8DY 1.13268052716839 4.03965363581365 NA 4.74482062883432 no change differentially expressed NA differentially expressed 1:155063936 11:65665421 ARRIBA frameshift 3 2 high [],translocation EFNA4 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA -EFR3A--AC022973.4 BS_WMEHNDSK 4.13607860295738 NA NA NA differentially expressed NA NA NA 8:131904322 8:129839900 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr8:2.06Mb]],duplication EFR3A NA AC022973.4 NA NA NA NA NA NA -EFR3A--EFR3A BS_13CGKADW 1.89638394304285 1.89638394304285 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 11 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_2SFTWNVE 0.522600308161543 0.522600308161543 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_470DYRJQ 1.26010554041525 1.26010554041525 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 9 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_5PEFNDCY 0.708218385768918 0.708218385768918 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 8 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_9DZ253JY -1.34326872617504 -1.34326872617504 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_9NJHQE9F 0.806635840061679 0.806635840061679 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 6 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_BSV07M7Z -0.452612478398005 -0.452612478398005 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_EFE4YEK3 -1.34041356563571 -1.34041356563571 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_FEPRNEXX 1.65088873989337 1.65088873989337 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 9 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_G9XE3N9T 1.44903256886468 1.44903256886468 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_GS1KR5PK 1.15985381715738 1.15985381715738 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 10 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_J71N7D09 1.33312186386814 1.33312186386814 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_KVNGNETA 1.67793945418403 1.67793945418403 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 14 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_N6NE6B3W 2.33816454488018 2.33816454488018 NA NA differentially expressed differentially expressed NA NA 8:131970643 8:131944745 ARRIBA frameshift 25 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_RCC8BXVE 0.723215301487005 0.723215301487005 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_S1M423AB -0.368071842360237 -0.368071842360237 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_X0F9AYEC 1.64692374033713 1.64692374033713 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_ZRM0W01M 2.15671107095454 2.15671107095454 NA NA differentially expressed differentially expressed NA NA 8:131970643 8:131944745 ARRIBA frameshift 8 4 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--EFR3A BS_ZXYDSBM9 -0.43469525547628 -0.43469525547628 NA NA no change no change NA NA 8:131970643 8:131944745 ARRIBA frameshift 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA -EFR3A--HNF4G(596171)/RNU2-54P(102529) BS_WMEHNDSK 4.13607860295738 -1.13175192677142 NA NA differentially expressed no change NA NA 8:132003285 8:76163014 ARRIBA frameshift 13 2 high [],inversion EFR3A NA HNF4G RNU2-54P NA TranscriptionFactor NA NA NA -EGFR--AC004899.1(27130)/GDI2P1(22528) BS_8NY9J9NQ 6.60476593002192 NA NA -0.283915109908497 differentially expressed NA NA no change 7:55181478 7:48880028 ARRIBA frameshift 244 64 high [],inversion EGFR NA AC004899.1 GDI2P1 Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -EHBP1--AC082651.4(3791)/RNU4-73P(28439) BS_RRAEQZ97 1.38058280049077 NA NA NA no change NA NA NA 2:62831158 2:9712204 ARRIBA frameshift 4 0 medium [],duplication EHBP1 NA AC082651.4 RNU4-73P NA NA NA NA NA -EHD1--ALKBH8 BS_SXCZ3CXN -0.239039821424277 -0.386230695450296 NA NA no change no change NA NA 11:64874421 11:107548169 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr11:42.61Mb]],inversion/5'-5' EHD1 NA ALKBH8 NA NA NA NA NA NA -EHF(24340)/AC087783.2(24203)--HIPK3 BS_3J85TTZM -0.483864516775706 5.43704280710522 NA NA no change differentially expressed NA NA 11:34685397 11:33286413 ARRIBA other 2 0 low [],duplication EHF AC087783.2 HIPK3 NA TumorSuppressorGene, TranscriptionFactor Kinase, Kinase NA NA NA -EHMT1--C9orf135 BS_A0DYVX9J 0.667412004356463 3.70586894264502 NA NA no change differentially expressed NA NA 9:137619049 9:69856555 ARRIBA in-frame 9 0 medium [INTRACHROMOSOMAL[chr9:67.71Mb]],duplication EHMT1 NA C9orf135 NA Oncogene NA NA NA NA -EHMT1--UNC79 BS_Y3G1X98S 2.17570862235408 -1.54498087483262 NA NA differentially expressed no change NA NA 9:137779717 14:93641145 ARRIBA in-frame 2 1 high [INTERCHROMOSOMAL[chr9--chr14]],translocation EHMT1 NA UNC79 NA Oncogene Oncogene NA NA NA -EIF1AX--FGF13 BS_QXKRN6CR 0.738680801111816 -0.010105756585006 NA NA no change no change NA NA X:20133764 X:138753305 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chrX:118.47Mb]],duplication EIF1AX NA FGF13 NA CosmicCensus, Oncogene Oncogene NA NA NA -EIF2AK4--CCDC47 BS_V4W81SFC -0.26005390127199 2.11232027220733 NA NA no change differentially expressed NA NA 15:40008195 17:63754518 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr15--chr17]],translocation EIF2AK4 NA CCDC47 NA Kinase NA NA NA NA -EIF2B2--MLH3 BS_ZRM0W01M -0.65917620933061 1.43146161925638 NA NA no change no change NA NA 14:75004735 14:75049718 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr14:0.00Mb],LOCAL_INVERSION:+:-:[1398]],duplication/3'-3' EIF2B2 NA MLH3 NA NA TumorSuppressorGene NA NA NA -EIF3D--DNAL4 BS_KE56MMY0 2.6268729906938 0.70048982967186 NA NA differentially expressed no change NA NA 22:36523209 22:38784255 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr22:2.25Mb]],duplication EIF3D NA DNAL4 NA NA Oncogene NA NA NA -EIF3D--DNAL4 BS_KE56MMY0 2.6268729906938 0.70048982967186 NA NA differentially expressed no change NA NA 22:36523209 22:38785997 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr22:2.25Mb]],duplication EIF3D NA DNAL4 NA NA Oncogene NA NA NA -EIF3D--SUN2 BS_KE56MMY0 2.6268729906938 1.41289744872864 NA NA differentially expressed no change NA NA 22:36523209 22:38784255 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr22:2.21Mb]],duplication EIF3D NA SUN2 NA NA NA NA NA NA -EIF3H--PVT1 BS_TZVFR600 7.94083432271731 7.95237672096039 NA NA differentially expressed differentially expressed NA NA 8:116726016 8:128096518 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:11.03Mb]],inversion EIF3H NA PVT1 NA NA Oncogene NA NA NA -EIF3J-AS1--ID3(12953)/MDS2(8748) BS_NGHK9RZP 1.2183018498289 2.57502541022844 NA -0.614811964606619 no change differentially expressed NA no change 15:44535263 1:23572747 ARRIBA other 2 0 medium [],translocation EIF3J-AS1 NA ID3 MDS2 NA CosmicCensus, Oncogene NA CosmicCensus, Oncogene NA -EIF3M--AL442163.1(23956)/AL356800.1(79767) BS_KE56MMY0 4.52369518291986 NA NA NA differentially expressed NA NA NA 11:32596047 14:42727611 ARRIBA frameshift 4 0 medium [],translocation EIF3M NA AL442163.1 AL356800.1 NA NA NA NA NA -EIF4ENIF1--AC069061.4(128622)/AC129926.1(25201) BS_044XZ8ST -0.0394904721180281 NA NA NA no change NA NA NA 22:31495983 17:27212658 ARRIBA other 2 2 medium [],translocation EIF4ENIF1 NA AC069061.4 AC129926.1 NA NA NA NA NA -EIF4ENIF1--AC069061.4(128622)/AC129926.1(25201) BS_6T4JGBGY -0.264579179093783 NA NA NA no change NA NA NA 22:31495983 17:27212658 ARRIBA other 4 0 low [],translocation EIF4ENIF1 NA AC069061.4 AC129926.1 NA NA NA NA NA -EIF4ENIF1--AC069061.4(128622)/AC129926.1(25201) BS_BSV07M7Z 1.28877457749641 NA NA NA no change NA NA NA 22:31495983 17:27212658 ARRIBA other 3 1 medium [],translocation EIF4ENIF1 NA AC069061.4 AC129926.1 NA NA NA NA NA -EIF4ENIF1--AC069061.4(128622)/AC129926.1(25201) BS_K2FHZGTK -1.02622534635462 NA NA NA no change NA NA NA 22:31495983 17:27212658 ARRIBA other 2 0 low [],translocation EIF4ENIF1 NA AC069061.4 AC129926.1 NA NA NA NA NA -EIF4ENIF1--AC069061.4(128622)/AC129926.1(25201) BS_R634WKN7 -0.387017539784285 NA NA NA no change NA NA NA 22:31495983 17:27212658 ARRIBA other 3 0 low [],translocation EIF4ENIF1 NA AC069061.4 AC129926.1 NA NA NA NA NA -EIF4ENIF1--AC069061.4(128622)/AC129926.1(25201) BS_X67GTEM6 -0.436834537625109 NA NA NA no change NA NA NA 22:31495983 17:27212658 ARRIBA other 2 0 low [],translocation EIF4ENIF1 NA AC069061.4 AC129926.1 NA NA NA NA NA -EIF4ENIF1--POLR3H BS_49FQXT2E 0.4341234966712 -0.798281758722689 NA NA no change no change NA NA 22:31439829 22:41539432 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr22:10.03Mb]],duplication EIF4ENIF1 NA POLR3H NA NA NA NA NA NA -EIF4ENIF1--POLR3H BS_49FQXT2E 0.4341234966712 -0.798281758722689 NA NA no change no change NA NA 22:31440704 22:41532745 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr22:10.03Mb]],duplication EIF4ENIF1 NA POLR3H NA NA NA NA NA NA -EIF4G3--SETD1B BS_7G42J2SK 0.942606302704949 0.0826169575643626 NA NA no change no change NA NA 1:21089138 12:121827519 ARRIBA other 8 0 high [INTERCHROMOSOMAL[chr1--chr12]],translocation EIF4G3 NA SETD1B NA NA CosmicCensus NA NA NA -ELAVL2--ELAVL2 BS_1T19NFJ8 0.23863214841332 0.23863214841332 NA NA no change no change NA NA 9:23731022 9:23765099 ARRIBA frameshift 10 3 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA -ELAVL2--ELAVL2 BS_2XD3MNKD -0.701990689943041 -0.701990689943041 NA NA no change no change NA NA 9:23731022 9:23765099 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA -ELAVL2--ELAVL2 BS_398KYV92 0.314811765981776 0.314811765981776 NA NA no change no change NA NA 9:23762006 9:23765099 ARRIBA frameshift 20 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA -ELAVL2--ELAVL2 BS_3P20Q2C3 0.30313024875173 0.30313024875173 NA NA no change no change NA NA 9:23762006 9:23765099 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA -ELAVL2--ELAVL2 BS_6MY8W3H0 0.950840029653178 0.950840029653178 NA NA no change no change NA NA 9:23762006 9:23765099 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA -ELAVL2--ELAVL2 BS_92VDQ0NE 0.519142381497232 0.519142381497232 NA NA no change no change NA NA 9:23731022 9:23765099 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA -ELAVL2--ELAVL2 BS_HCP5C912 0.544554912002367 0.544554912002367 NA NA no change no change NA NA 9:23762006 9:23765099 ARRIBA frameshift 17 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA -ELAVL2--ELAVL2 BS_J71N7D09 0.115721079251658 0.115721079251658 NA NA no change no change NA NA 9:23762006 9:23765099 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA -ELAVL2--ELAVL2 BS_JXNZYGCR -0.87130080566562 -0.87130080566562 NA NA no change no change NA NA 9:23762006 9:23765099 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA -ELAVL2--ELAVL2 BS_K5802F84 0.162702721541923 0.162702721541923 NA NA no change no change NA NA 9:23762006 9:23765099 ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA -ELAVL2--ELAVL2 BS_NT9NZYFD -0.52717285675489 -0.52717285675489 NA NA no change no change NA NA 9:23762006 9:23765099 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA -ELAVL2--ELAVL2 BS_V96WVE3Z 3.51220536425572 3.51220536425572 NA NA differentially expressed differentially expressed NA NA 9:23762006 9:23765099 ARRIBA frameshift 77 2 medium [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA -ELAVL2--ELAVL2 BS_VMMJYN8Z 0.939223927396155 0.939223927396155 NA NA no change no change NA NA 9:23731022 9:23765099 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA -ELAVL2--ELAVL2 BS_VNE0ZPBS 0.541410417642486 0.541410417642486 NA NA no change no change NA NA 9:23762006 9:23765099 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA -ELAVL2--ELAVL2 BS_YB2RXRHT 0.749209104807207 0.749209104807207 NA NA no change no change NA NA 9:23731022 9:23765099 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA -ELAVL2--ELAVL2 BS_ZR96A4FH 0.42290739694403 0.42290739694403 NA NA no change no change NA NA 9:23762006 9:23765099 ARRIBA frameshift 22 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA -ELAVL3--PAFAH1B3 BS_DY9NTFQR -0.752948901664622 0.428562300846471 NA NA no change no change NA NA 19:11451920 19:42300287 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr19:30.82Mb]],inversion/3'-3' ELAVL3 NA PAFAH1B3 NA NA NA NA NA NA -ELF1--LINC00598 BS_AZN38B7V 5.58778510333795 10.3745485329603 NA NA differentially expressed differentially expressed NA NA 13:41060838 13:40119525 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr13:0.40Mb]],deletion ELF1 NA LINC00598 NA TranscriptionFactor NA NA NA NA -ELF2--AC079380.1 BS_D2K9C7XR 1.59698222100378 NA NA NA no change NA NA NA 4:139176967 4:134103517 ARRIBA other 9 0 medium [INTRACHROMOSOMAL[chr4:5.02Mb]],deletion ELF2 NA AC079380.1 NA TranscriptionFactor NA NA NA NA -ELF2--AC079380.1(92827)/PABPC4L(92816) BS_D2K9C7XR 1.59698222100378 NA NA 2.50135621114204 no change NA NA differentially expressed 4:139176967 4:134103517 ARRIBA other 13 0 high [],deletion ELF2 NA AC079380.1 PABPC4L TranscriptionFactor NA NA NA NA -ELF2--LINC02462(87434)/AC093722.1(214113) BS_K81DR8XG 1.45268626995997 NA NA NA no change NA NA NA 4:139125164 4:134545286 ARRIBA frameshift 1 2 high [],inversion ELF2 NA LINC02462 AC093722.1 TranscriptionFactor NA NA NA NA -ELK1--UXT BS_1T19NFJ8 -0.752538169438919 -1.47926907526481 NA NA no change no change NA NA X:47649921 X:47652144 ARRIBA other 2 1 low [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:-:[1194]],duplication ELK1 NA UXT NA Oncogene, TranscriptionFactor NA NA NA NA -ELK1--UXT BS_C7N3J4NW 0.504572053807029 -2.98988491879019 NA NA no change differentially expressed NA NA X:47649921 X:47652144 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:-:[1194]],duplication ELK1 NA UXT NA Oncogene, TranscriptionFactor NA NA NA NA -ELK1--UXT BS_K5802F84 -0.649966794598696 -2.60598704209066 NA NA no change differentially expressed NA NA X:47649921 X:47652144 ARRIBA other 3 1 low [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:-:[1194]],duplication ELK1 NA UXT NA Oncogene, TranscriptionFactor NA NA NA NA -ELK1--UXT BS_TG93XC55 0.705744371714131 -2.51895385516636 NA NA no change differentially expressed NA NA X:47649921 X:47652144 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:-:[1194]],duplication ELK1 NA UXT NA Oncogene, TranscriptionFactor NA NA NA NA -ELK1--UXT BS_WCRKYV0T 0.127943296355824 -2.73747661253268 NA NA no change differentially expressed NA NA X:47649921 X:47652144 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:-:[1194]],duplication ELK1 NA UXT NA Oncogene, TranscriptionFactor NA NA NA NA -ELK1--UXT BS_ZRM0W01M 0.509135055811699 -2.50262532785586 NA NA no change differentially expressed NA NA X:47649921 X:47652144 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:-:[1194]],duplication ELK1 NA UXT NA Oncogene, TranscriptionFactor NA NA NA NA -ELK1--UXT BS_ZRM0W01M 0.509135055811699 -2.50262532785586 NA NA no change differentially expressed NA NA X:47641232 X:47652144 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:-:[1194]],duplication ELK1 NA UXT NA Oncogene, TranscriptionFactor NA NA NA NA -ELL--ZFP28 BS_ERWT0ZWE 0.500420741660386 2.00180811611681 NA NA no change differentially expressed NA NA 19:18521921 19:56547508 ARRIBA in-frame 12 0 high [INTRACHROMOSOMAL[chr19:38.02Mb]],inversion ELL NA ZFP28 NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA -ELL--ZFP28 BS_ERWT0ZWE 0.500420741660386 2.00180811611681 NA NA no change differentially expressed NA NA 19:18521921 19:56547807 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr19:38.02Mb]],inversion ELL NA ZFP28 NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA -ELL2--CAST BS_N1E0H8YQ 2.96811847459031 2.31657982593457 NA NA differentially expressed differentially expressed NA NA 5:95961586 5:96675539 ARRIBA other 2 1 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr5:0.56Mb]],deletion/3'-3' ELL2 NA CAST NA NA NA NA NA TCGAFusion -ELMO1--EPDR1 BS_9XWJ88Q1 0.222224080822055 1.09659774210168 NA NA no change no change NA NA 7:37211386 7:37948840 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:0.47Mb]],inversion ELMO1 NA EPDR1 NA Oncogene NA NA NA NA -ELMO1--RBFOX1 BS_401R3KV0 -0.714076346529663 -1.68091298914657 NA NA no change no change NA NA 7:36985923 16:6490171 ARRIBA other 2 2 high [INTERCHROMOSOMAL[chr7--chr16]],translocation/5'-5' ELMO1 NA RBFOX1 NA Oncogene NA NA NA NA -ELOA--IFNLR1 BS_1EBQ3T20 NA 1.69154191456718 NA NA NA no change NA NA 1:23743578 1:24180854 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.39Mb]],inversion ELOA NA IFNLR1 NA NA NA NA NA NA -ELOA--IFNLR1 BS_1EBQ3T20 NA 1.69154191456718 NA NA NA no change NA NA 1:23743578 1:24169601 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.39Mb]],inversion ELOA NA IFNLR1 NA NA NA NA NA NA -ELOA--IFNLR1 BS_8ZD6J47V NA 1.93116731485336 NA NA NA no change NA NA 1:23743578 1:24180854 ARRIBA frameshift 10 0 high [INTRACHROMOSOMAL[chr1:0.39Mb]],inversion ELOA NA IFNLR1 NA NA NA NA NA NA -ELOA--IFNLR1 BS_8ZD6J47V NA 1.93116731485336 NA NA NA no change NA NA 1:23743578 1:24169601 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.39Mb]],inversion ELOA NA IFNLR1 NA NA NA NA NA NA -ELOA--IFNLR1 BS_M8EA6R2A NA 2.29190600149603 NA NA NA differentially expressed NA NA 1:23743578 1:24180854 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.39Mb]],inversion ELOA NA IFNLR1 NA NA NA NA NA NA -ELOA--IFNLR1 BS_M8EA6R2A NA 2.29190600149603 NA NA NA differentially expressed NA NA 1:23743578 1:24169601 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.39Mb]],inversion ELOA NA IFNLR1 NA NA NA NA NA NA -ELP4--RDX BS_FW5ECXXK 1.57937955867594 1.58931156531557 NA NA no change no change NA NA 11:31650221 11:110199678 ARRIBA frameshift 1 3 high [INTRACHROMOSOMAL[chr11:78.38Mb]],inversion ELP4 NA RDX NA NA NA NA NA NA -EMBP1--HDAC9 BS_6JHXXVR7 4.45024112510783 0.505385291329156 NA NA differentially expressed no change NA NA 1:121538420 7:18793345 ARRIBA other 6 1 high [INTERCHROMOSOMAL[chr1--chr7]],translocation EMBP1 NA HDAC9 NA NA NA NA NA NA -EMBP1--HDAC9 BS_6JHXXVR7 4.45024112510783 0.505385291329156 NA NA differentially expressed no change NA NA 1:121519459 7:18793345 ARRIBA other 2 0 high [INTERCHROMOSOMAL[chr1--chr7]],translocation EMBP1 NA HDAC9 NA NA NA NA NA NA -EMBP1--HDAC9 BS_6JHXXVR7 4.45024112510783 0.505385291329156 NA NA differentially expressed no change NA NA 1:121519459 7:18829161 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr1--chr7]],translocation EMBP1 NA HDAC9 NA NA NA NA NA NA -EMC1--AKR7A3 BS_52C576HH 4.54420295961509 1.38826714057194 NA NA differentially expressed no change NA NA 1:19222624 1:19286372 ARRIBA in-frame 3 4 medium [CCLE,INTRACHROMOSOMAL[chr1:0.03Mb],LOCAL_REARRANGEMENT:-:[31006]],duplication EMC1 NA AKR7A3 NA NA NA NA NA NA -EMC1--AL035413.2(3454)/AKR7A2(2608) BS_52C576HH 4.54420295961509 NA NA 1.08302869623912 differentially expressed NA NA no change 1:19222624 1:19301357 ARRIBA frameshift 8 0 medium [],duplication EMC1 NA AL035413.2 AKR7A2 NA NA NA NA NA -EMC3--AC092335.1 BS_KE56MMY0 1.22909089083069 NA NA NA no change NA NA NA 3:9986507 5:16183723 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr3--chr5]],translocation EMC3 NA AC092335.1 NA NA NA NA NA NA -EML5--EML5 BS_1021ZGQT 0.746777375785909 0.746777375785909 NA NA no change no change NA NA 14:88712271 14:88754671 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.18Mb]],duplication/non-canonical_splicing EML5 NA EML5 NA NA NA NA NA NA -EML5--EML5 BS_3X9WMZGJ -0.584555519338636 -0.584555519338636 NA NA no change no change NA NA 14:88712271 14:88754671 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.18Mb]],duplication/non-canonical_splicing EML5 NA EML5 NA NA NA NA NA NA -EML5--EML5 BS_S0175QKX 0.399474581193931 0.399474581193931 NA NA no change no change NA NA 14:88712271 14:88754671 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.18Mb]],duplication/non-canonical_splicing EML5 NA EML5 NA NA NA NA NA NA -EML5--EML5 BS_SBFNFZ8B 0.296757691812374 0.296757691812374 NA NA no change no change NA NA 14:88712271 14:88754671 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.18Mb]],duplication/non-canonical_splicing EML5 NA EML5 NA NA NA NA NA NA -EML5--EML5(2378)/AL121768.1(24478) BS_7BTZQKYY 1.18075754319438 1.18075754319438 NA NA no change no change NA NA 14:88704860 14:88795130 ARRIBA frameshift 4 0 medium [],duplication EML5 NA EML5 AL121768.1 NA NA NA NA NA -EML6--EML6 BS_0WVJYM9R -0.559876075088681 -0.559876075088681 NA NA no change no change NA NA 2:54820462 2:54793289 ARRIBA frameshift 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.25Mb]],duplication EML6 NA EML6 NA NA NA NA NA NA -EML6--EML6 BS_YE1MAQYJ 0.24176178075436 0.24176178075436 NA NA no change no change NA NA 2:54928751 2:54891054 ARRIBA in-frame 3 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.25Mb]],duplication/non-canonical_splicing EML6 NA EML6 NA NA NA NA NA NA -ENTPD1-AS1--ENTPD1-AS1 BS_NB5XWMJT 4.76964318146202 4.76964318146202 NA NA differentially expressed differentially expressed NA NA 10:95876518 10:95921597 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.34Mb]],duplication/non-canonical_splicing ENTPD1-AS1 NA ENTPD1-AS1 NA NA NA NA NA NA -EP300--BCOR BS_WGK8ZMVA 3.92660163520615 7.45038655555892 NA NA differentially expressed differentially expressed NA NA 22:41178264 X:40063065 ARRIBA in-frame 121 11 high [FA_CancerSupp,ChimerSeq,INTERCHROMOSOMAL[chr22--chrX]],translocation EP300 NA BCOR NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA TCGAFusion -EPB41L2--SLC2A12(33159)/HMGA1P7(29440) BS_3F4FQJMR -0.276458393909496 1.11225657490655 NA -0.815122973205857 no change no change NA no change 6:131063155 6:134085795 ARRIBA other 4 0 medium [],inversion EPB41L2 NA SLC2A12 HMGA1P7 NA NA NA NA NA -EPB41L2--SLC2A12(33159)/HMGA1P7(29440) BS_HC44ZA0V 0.0273765553157492 1.53677470622308 NA -0.815122973205857 no change no change NA no change 6:131063155 6:134085795 ARRIBA other 6 0 medium [],inversion EPB41L2 NA SLC2A12 HMGA1P7 NA NA NA NA NA -EPB41L3--EPB41L3 BS_TNRHHYNC -1.14211308037454 -1.14211308037454 NA NA no change no change NA NA 18:5406777 18:5434121 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.24Mb]],duplication/non-canonical_splicing EPB41L3 NA EPB41L3 NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA -EPB41L4A--CDH12 BS_QB7YGKN1 0.128934028757554 -1.22976419228499 NA NA no change no change NA NA 5:112262494 5:22033667 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr5:89.29Mb]],inversion/5'-5' EPB41L4A NA CDH12 NA NA NA NA NA NA -EPB41L4B--EPB41L4B BS_78QX3XDF -0.622048002678708 -0.622048002678708 NA NA no change no change NA NA 9:109247756 9:109265024 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.15Mb]],duplication/non-canonical_splicing EPB41L4B NA EPB41L4B NA NA NA NA NA NA -EPB41L5--EPB41L5 BS_YB2RXRHT 1.05623548321624 1.05623548321624 NA NA no change no change NA NA 2:120175004 2:120116714 ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.17Mb]],duplication EPB41L5 NA EPB41L5 NA NA NA NA NA NA -EPC1--PWP1 BS_QWTE1CWR 0.61294847302454 0.132005660062259 NA NA no change no change NA NA 10:32346763 12:107709111 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr10--chr12]],translocation EPC1 NA PWP1 NA NA NA NA NA NA -EPC1--PWP1 BS_QWTE1CWR 0.61294847302454 0.132005660062259 NA NA no change no change NA NA 10:32346763 12:107708926 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr10--chr12]],translocation EPC1 NA PWP1 NA NA NA NA NA NA -EPC1--PWP1 BS_QWTE1CWR 0.61294847302454 0.132005660062259 NA NA no change no change NA NA 10:32346763 12:107704636 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr10--chr12]],translocation EPC1 NA PWP1 NA NA NA NA NA NA -EPC1--PWP1 BS_QWTE1CWR 0.61294847302454 0.132005660062259 NA NA no change no change NA NA 10:32346763 12:107702935 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr10--chr12]],translocation EPC1 NA PWP1 NA NA NA NA NA NA -EPC1--PWP1 BS_QWTE1CWR 0.61294847302454 0.132005660062259 NA NA no change no change NA NA 10:32346763 12:107703685 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr10--chr12]],translocation EPC1 NA PWP1 NA NA NA NA NA NA -EPDR1--RNU6-832P(47369)/AC069280.1(15088) BS_593HEWBF 0.657664324416761 NA NA NA no change NA NA NA 7:37921208 7:69172745 ARRIBA frameshift 29 1 high [],inversion EPDR1 NA RNU6-832P AC069280.1 NA NA NA NA NA -EPHA3--GUCY2EP(37307)/AP003119.1(2808) BS_6VPKXXMR 19.1721967169927 -0.215972505236898 NA NA differentially expressed no change NA NA 3:89210520 11:76757108 ARRIBA frameshift 4 2 medium [],translocation EPHA3 NA GUCY2EP AP003119.1 Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA -EPHA3--TSKU BS_6VPKXXMR 19.1721967169927 8.90003236284469 NA NA differentially expressed differentially expressed NA NA 3:89210520 11:76795609 ARRIBA in-frame 33 7 high [INTERCHROMOSOMAL[chr3--chr11]],translocation EPHA3 NA TSKU NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA -EPHA3--TSKU BS_M85CXHDV 11.4753137334033 6.21890968726958 NA NA differentially expressed differentially expressed NA NA 3:89210520 11:76795609 ARRIBA in-frame 7 1 high [INTERCHROMOSOMAL[chr3--chr11]],translocation EPHA3 NA TSKU NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA -EPHA4--PGM2 BS_99B1XRZQ -0.335809191913048 3.00115954644905 NA NA no change differentially expressed NA NA 2:221455547 4:37844364 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr2--chr4]],translocation EPHA4 NA PGM2 NA Kinase, Kinase NA NA NA NA -EPHA5--EPHA5 BS_2XD3MNKD 0.246097072382569 0.246097072382569 NA NA no change no change NA NA 4:65404374 4:65495543 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.35Mb]],duplication/non-canonical_splicing EPHA5 NA EPHA5 NA Kinase, Kinase Kinase, Kinase NA NA NA -EPHA5--EPHA5 BS_5YJEPPTP 2.27323723753287 2.27323723753287 NA NA differentially expressed differentially expressed NA NA 4:65414284 4:65495543 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.35Mb]],duplication/non-canonical_splicing EPHA5 NA EPHA5 NA Kinase, Kinase Kinase, Kinase NA NA NA -EPHA5--EPHA5 BS_M4NVX721 2.25937693876882 2.25937693876882 NA NA differentially expressed differentially expressed NA NA 4:65331973 4:65377063 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.35Mb]],duplication/non-canonical_splicing EPHA5 NA EPHA5 NA Kinase, Kinase Kinase, Kinase NA NA NA -EPHA5--EPHA5 BS_NT9NZYFD 1.02499754746863 1.02499754746863 NA NA no change no change NA NA 4:65414284 4:65420565 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.35Mb]],duplication/non-canonical_splicing EPHA5 NA EPHA5 NA Kinase, Kinase Kinase, Kinase NA NA NA -EPHB1--CEP63 BS_1EBQ3T20 2.07168768530373 2.66282230234682 NA NA differentially expressed differentially expressed NA NA 3:134615438 3:134488019 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr3:0.02Mb],LOCAL_REARRANGEMENT:+:[22784]],duplication EPHB1 NA CEP63 NA Kinase, Kinase NA NA NA NA -EPHB1--CEP63 BS_1EBQ3T20 2.07168768530373 2.66282230234682 NA NA differentially expressed differentially expressed NA NA 3:134615438 3:134495296 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr3:0.02Mb],LOCAL_REARRANGEMENT:+:[22784]],duplication EPHB1 NA CEP63 NA Kinase, Kinase NA NA NA NA -EPHB1--CEP63 BS_1EBQ3T20 2.07168768530373 2.66282230234682 NA NA differentially expressed differentially expressed NA NA 3:134779881 3:134495296 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:0.02Mb],LOCAL_REARRANGEMENT:+:[22784]],duplication EPHB1 NA CEP63 NA Kinase, Kinase NA NA NA NA -EPHB1--CEP63 BS_1EBQ3T20 2.07168768530373 2.66282230234682 NA NA differentially expressed differentially expressed NA NA 3:134597984 3:134495296 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:0.02Mb],LOCAL_REARRANGEMENT:+:[22784]],duplication EPHB1 NA CEP63 NA Kinase, Kinase NA NA NA NA -EPHB1--CEP63 BS_8ZD6J47V -0.123883806334797 2.58406294334588 NA NA no change differentially expressed NA NA 3:134615438 3:134495296 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr3:0.02Mb],LOCAL_REARRANGEMENT:+:[22784]],duplication EPHB1 NA CEP63 NA Kinase, Kinase NA NA NA NA -EPHB1--CEP63 BS_8ZD6J47V -0.123883806334797 2.58406294334588 NA NA no change differentially expressed NA NA 3:134615438 3:134488019 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:0.02Mb],LOCAL_REARRANGEMENT:+:[22784]],duplication EPHB1 NA CEP63 NA Kinase, Kinase NA NA NA NA -EPHX2--VWA5B1(2971)/LINC01141(2714) BS_X67GTEM6 -0.22790586114189 5.46887679931688 NA -0.594698454919858 no change differentially expressed NA no change 8:27525469 1:20357865 ARRIBA frameshift 2 0 low [],translocation EPHX2 NA VWA5B1 LINC01141 NA NA NA NA NA -EPS15--DMD BS_H1ZS5FMZ -0.681093003240555 4.1632531752252 NA NA no change differentially expressed NA NA 1:51361171 X:31348634 ARRIBA in-frame 3 0 high [INTERCHROMOSOMAL[chr1--chrX]],translocation EPS15 NA DMD NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA -EPS8--EPS8 BS_TM9MH0RP 3.03347250624721 3.03347250624721 NA NA differentially expressed differentially expressed NA NA 12:15631442 12:15651006 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.26Mb]],duplication/non-canonical_splicing EPS8 NA EPS8 NA Oncogene Oncogene NA NA NA -EPS8L2--RAD21L1 BS_SFRQXM76 -0.325387236031723 14.3019124349616 NA NA no change differentially expressed NA NA 11:710486 20:1234085 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr11--chr20]],translocation EPS8L2 NA RAD21L1 NA NA NA NA NA NA -ERBB4--ERBB4 BS_PJPGVD62 0.950747273935577 0.950747273935577 NA NA no change no change NA NA 2:211561903 2:211630594 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:1.16Mb]],duplication/non-canonical_splicing ERBB4 NA ERBB4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -ERBB4--ERBB4 BS_SAA624A4 -1.07231535774669 -1.07231535774669 NA NA no change no change NA NA 2:211561903 2:211630594 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:1.16Mb]],duplication/non-canonical_splicing ERBB4 NA ERBB4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -ERBB4--ERBB4 BS_WMEHNDSK -1.08239729264121 -1.08239729264121 NA NA no change no change NA NA 2:211619177 2:211657828 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:1.16Mb]],duplication/non-canonical_splicing ERBB4 NA ERBB4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -ERBB4--ERBB4(24957)/AC093865.1(17559) BS_BJDNWMJH 1.61935660616203 1.61935660616203 NA NA no change no change NA NA 2:212538449 2:212563798 ARRIBA frameshift 2 1 medium [],duplication ERBB4 NA ERBB4 AC093865.1 Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -ERC1--AC005842.1 BS_W644VEVE 3.38205052943934 NA NA NA differentially expressed NA NA NA 12:1190052 12:3909884 ARRIBA frameshift 6 2 high [INTRACHROMOSOMAL[chr12:2.38Mb]],deletion ERC1 NA AC005842.1 NA CosmicCensus, Oncogene NA NA NA NA -ERC1--AC005842.1 BS_W644VEVE 3.38205052943934 NA NA NA differentially expressed NA NA NA 12:1190052 12:3875131 ARRIBA frameshift 4 2 high [INTRACHROMOSOMAL[chr12:2.38Mb]],inversion/3'-3' ERC1 NA AC005842.1 NA CosmicCensus, Oncogene NA NA NA NA -ERC1--AC005842.1 BS_W644VEVE 3.38205052943934 NA NA NA differentially expressed NA NA NA 12:1028572 12:3909884 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:2.38Mb]],deletion ERC1 NA AC005842.1 NA CosmicCensus, Oncogene NA NA NA NA -ERC1--AC005842.1(82926)/AC007207.2(27713) BS_81SP2HX4 5.33122944318442 NA NA NA differentially expressed NA NA NA 12:1210708 12:3993264 ARRIBA other 57 6 high [],inversion ERC1 NA AC005842.1 AC007207.2 CosmicCensus, Oncogene NA NA NA NA -ERC1--AC007207.1(5160)/CCND2-AS1(125473) BS_W644VEVE 3.38205052943934 NA NA 2.35256618193704 differentially expressed NA NA differentially expressed 12:1028572 12:4123292 ARRIBA frameshift 3 0 medium [],deletion ERC1 NA AC007207.1 CCND2-AS1 CosmicCensus, Oncogene NA NA Oncogene NA -ERC1--AC010880.1(22373)/AC104623.1(68101) BS_W644VEVE 3.38205052943934 NA NA NA differentially expressed NA NA NA 12:1183337 2:16455075 ARRIBA frameshift 16 3 medium [],translocation ERC1 NA AC010880.1 AC104623.1 CosmicCensus, Oncogene NA NA NA NA -ERC1--AC069208.1 BS_A0DYVX9J 3.07162344091614 NA NA NA differentially expressed NA NA NA 12:1263165 12:24277312 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr12:22.72Mb]],inversion ERC1 NA AC069208.1 NA CosmicCensus, Oncogene NA NA NA NA -ERC1--AC130710.1 BS_W644VEVE 3.38205052943934 NA NA NA differentially expressed NA NA NA 12:1004720 2:16094380 ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation ERC1 NA AC130710.1 NA CosmicCensus, Oncogene NA NA NA NA -ERC1--AC130710.1 BS_W644VEVE 3.38205052943934 NA NA NA differentially expressed NA NA NA 12:998482 2:16085483 ARRIBA other 4 1 low [INTERCHROMOSOMAL[chr12--chr2]],translocation ERC1 NA AC130710.1 NA CosmicCensus, Oncogene NA NA NA NA -ERC1--CACNA1C BS_W644VEVE 3.38205052943934 -1.49491098309613 NA NA differentially expressed no change NA NA 12:1218235 12:2482126 ARRIBA other 106 26 high [INTRACHROMOSOMAL[chr12:0.47Mb]],inversion/3'-3' ERC1 NA CACNA1C NA CosmicCensus, Oncogene NA NA NA NA -ERC1--CACNA1C BS_W644VEVE 3.38205052943934 -1.49491098309613 NA NA differentially expressed no change NA NA 12:1141787 12:2448976 ARRIBA in-frame 11 1 high [INTRACHROMOSOMAL[chr12:0.47Mb]],deletion ERC1 NA CACNA1C NA CosmicCensus, Oncogene NA NA NA NA -ERC1--CCDC77 BS_W644VEVE 3.38205052943934 2.84829449265605 NA NA differentially expressed differentially expressed NA NA 12:991322 12:433644 ARRIBA other 2 0 medium [CCLE,INTRACHROMOSOMAL[chr12:0.55Mb]],inversion/3'-3' ERC1 NA CCDC77 NA CosmicCensus, Oncogene NA NA NA NA -ERC1--CCND2 BS_W644VEVE 3.38205052943934 10.5051335938283 NA NA differentially expressed differentially expressed NA NA 12:998482 12:4299860 ARRIBA other 110 22 medium [INTRACHROMOSOMAL[chr12:2.78Mb]],deletion ERC1 NA CCND2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -ERC1--EPB41 BS_PGHK1JRW 2.32882263065385 1.15076329274794 NA NA differentially expressed no change NA NA 12:1263165 1:29011865 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr12--chr1]],translocation ERC1 NA EPB41 NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA -ERC1--LINC02455(14316)/WNK1(54150) BS_W644VEVE 3.38205052943934 NA NA 1.94863063009368 differentially expressed NA NA no change 12:1176122 12:698443 ARRIBA other 8 3 medium [],deletion ERC1 NA LINC02455 WNK1 CosmicCensus, Oncogene NA NA Kinase, Kinase NA -ERC1--PHBP17 BS_PNYN0AYD 2.53453529324617 64.7760040207123 NA NA differentially expressed differentially expressed NA NA 12:1028572 11:123340481 ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr12--chr11]],translocation ERC1 NA PHBP17 NA CosmicCensus, Oncogene NA NA NA NA -ERC1--PRMT8 BS_81SP2HX4 5.33122944318442 0.773974865726146 NA NA differentially expressed no change NA NA 12:1190052 12:3549936 ARRIBA frameshift 72 7 high [INTRACHROMOSOMAL[chr12:1.89Mb]],deletion ERC1 NA PRMT8 NA CosmicCensus, Oncogene NA NA NA NA -ERC1--PRMT8 BS_81SP2HX4 5.33122944318442 0.773974865726146 NA NA differentially expressed no change NA NA 12:1204512 12:3549936 ARRIBA frameshift 5 12 high [INTRACHROMOSOMAL[chr12:1.89Mb]],deletion ERC1 NA PRMT8 NA CosmicCensus, Oncogene NA NA NA NA -ERC2--ATP1B3 BS_FAQQ0GCQ -1.18887183324169 -1.64425506698359 NA NA no change no change NA NA 3:56007181 3:141921977 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr3:85.41Mb]],inversion ERC2 NA ATP1B3 NA Oncogene NA NA NA NA -ERC2--ERC2 BS_044XZ8ST 1.27436642939706 1.27436642939706 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 20 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_063ERW0R 0.793413476949212 0.793413476949212 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_07ANYSYQ 1.1831071300745 1.1831071300745 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_09R7GDA7 2.39279317199895 2.39279317199895 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 16 4 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_0T17SY47 1.48611908203865 1.48611908203865 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 43 5 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_0WVJYM9R -0.331149059048462 -0.331149059048462 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_0Y66ZBWE 1.20323853096588 1.20323853096588 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 12 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_1G3WYEN3 2.18995879836283 2.18995879836283 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 40 7 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_1KYGSMA7 1.00987191920045 1.00987191920045 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 24 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_1T19NFJ8 1.74597156519588 1.74597156519588 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 95 8 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_1XJ73KBQ -0.331149059048462 -0.331149059048462 NA NA no change no change NA NA 3:55888389 3:55992250 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_23W9EPFE 0.513343935609362 0.513343935609362 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_258RRGDM 2.84392752082609 2.84392752082609 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 47 5 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_264RCK7G 1.2661717507735 1.2661717507735 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_273HKCT4 1.34746483969891 1.34746483969891 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 22 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_27QE6BV7 -0.0890707585641141 -0.0890707585641141 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_2AR3AP0N 1.27844700681759 1.27844700681759 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 26 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_2XD3MNKD 1.49084113923567 1.49084113923567 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 66 4 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_34201DKZ -0.179819202677768 -0.179819202677768 NA NA no change no change NA NA 3:55606780 3:55699512 ARRIBA other 2 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_398KYV92 2.42597369773651 2.42597369773651 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 49 5 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_39CGACC7 1.54977691457693 1.54977691457693 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 48 7 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_3KASVCSQ 1.89080755705488 1.89080755705488 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 18 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_3MS8WVNR -0.147779886787052 -0.147779886787052 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 20 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_3P20Q2C3 2.30579033011895 2.30579033011895 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 45 9 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_3PYESPHA 2.40883717221698 2.40883717221698 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 16 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_3T6X4BPC 1.91763427667443 1.91763427667443 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 21 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_3XY76V8T 0.893303772359441 0.893303772359441 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 13 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_470DYRJQ 0.229974949628067 0.229974949628067 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 19 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_478TN841 -0.183421829904394 -0.183421829904394 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_49FQXT2E 1.14052472378994 1.14052472378994 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 28 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_4B0BAVTX -0.906571429200747 -0.906571429200747 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_4GTESTSE 0.934886748802673 0.934886748802673 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 22 4 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_4W1DBAN4 3.22011779907409 3.22011779907409 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 98 10 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_52426AMF 0.130994270887932 0.130994270887932 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 3 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_5K3R0F5D 2.00122342518623 2.00122342518623 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 35 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_5PEFNDCY 0.478983799058925 0.478983799058925 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 30 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_60K3EQ9S 1.56106573799078 1.56106573799078 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 27 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_680K119G 1.14052472378994 1.14052472378994 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 23 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_699TN5RN 0.48129917599406 0.48129917599406 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 13 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_6WP1FHTE 1.20466618094545 1.20466618094545 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 12 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_7N0B2CY1 3.27407879330693 3.27407879330693 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 34 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_7XRN3CFX 1.35909374411592 1.35909374411592 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 28 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_8MA5B8Y9 2.59017281193549 2.59017281193549 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 31 5 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_90B22NGP 2.15103744255133 2.15103744255133 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 25 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_912NX4Y0 2.02285757782527 2.02285757782527 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 33 9 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_92VDQ0NE 2.96491721347898 2.96491721347898 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 103 12 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_9RT63JD9 1.75390213150833 1.75390213150833 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 14 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_AD4JPN9Q 1.24131505782358 1.24131505782358 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 17 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_AG4H9S3J 1.97330659492886 1.97330659492886 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 13 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_AJ6X83G5 3.27479483775499 3.27479483775499 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 42 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_AMQGM1V9 3.08906103639255 3.08906103639255 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 109 12 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_AWH9757B 1.92647073025803 1.92647073025803 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 19 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_B1HVNV0T 1.87721172435107 1.87721172435107 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_B8T7M0WV 0.835999516027625 0.835999516027625 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_BB0YW800 0.249009241034361 0.249009241034361 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 4 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_BHR08WGW -0.339132496052811 -0.339132496052811 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_BKR4E30C 0.839646024262393 0.839646024262393 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 21 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_C6ZZ3FY5 0.207920909594334 0.207920909594334 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_C7N3J4NW 2.68600216532528 2.68600216532528 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 36 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_CGB2WS2A 0.218988545153557 0.218988545153557 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_CQSAJ7BF 2.5389773171545 2.5389773171545 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 46 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_CREQ97QC 3.06619482801689 3.06619482801689 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 92 13 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_CVGFNCBJ 1.79197314003363 1.79197314003363 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 24 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_CW9QV8AG 2.04418350737689 2.04418350737689 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 30 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_CZ82ANWP 1.21603862607496 1.21603862607496 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 12 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_DFGS950G 1.85149762888438 1.85149762888438 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 20 4 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_DMZP9G1H 2.92927527036164 2.92927527036164 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 70 8 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_DV86M0Y7 0.747645094639144 0.747645094639144 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_DVCQ8XDZ 2.5465653940672 2.5465653940672 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 46 9 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_E4GC9EXR 0.125135590649298 0.125135590649298 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_E4QK839R -0.147779886787052 -0.147779886787052 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_EF775B3K 2.22356537384608 2.22356537384608 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 18 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_ERJAJ0KA 1.31732947578092 1.31732947578092 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 18 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_FEPRNEXX 0.993530153292197 0.993530153292197 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 36 6 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_FJZPQZ2C 0.639243712898144 0.639243712898144 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 19 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_FW5ECXXK 2.03273808162032 2.03273808162032 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 32 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_G9XE3N9T 0.333067302893621 0.333067302893621 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_GYA4V1RD 0.0343871465356449 0.0343871465356449 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_HCP5C912 3.26761893288053 3.26761893288053 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 168 23 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_JXNZYGCR 2.19806406049512 2.19806406049512 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 36 8 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_K5802F84 2.56162711678514 2.56162711678514 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 121 16 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_KPT2WPHW 3.17718515524143 3.17718515524143 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 157 18 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_KQ6ZW085 2.24080423105456 2.24080423105456 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 34 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_KX6J8TRK -0.176225225224712 -0.176225225224712 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_M1PVEHCM 3.06413611377392 3.06413611377392 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 45 4 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_M4NVX721 1.90785354702004 1.90785354702004 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 39 10 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_MA2T7ET1 0.0375024252669641 0.0375024252669641 NA NA no change no change NA NA 3:55888389 3:56080984 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_ME3HKN2C 0.224491826683595 0.224491826683595 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_MF47B9ZW 3.38748946358359 3.38748946358359 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 34 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_N6NE6B3W 1.14052472378994 1.14052472378994 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 62 7 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_NFRXNAFE 2.26769944810697 2.26769944810697 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 22 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_NT9NZYFD 1.68200515194201 1.68200515194201 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 85 14 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_NVKGSMXS 3.05877016798324 3.05877016798324 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 48 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_NYS8TRCB 1.64737521677661 1.64737521677661 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 18 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_P44PE00R 2.95165073766078 2.95165073766078 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 25 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_QC3XCE6X 2.30030971661851 2.30030971661851 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 37 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_QF5VVZX5 3.00659668259872 3.00659668259872 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 42 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_QNAQGAV6 1.83097917703789 1.83097917703789 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA frameshift 31 5 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_QTSXW7DA -0.0131371907444414 -0.0131371907444414 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_R7HZCZ8B 0.64547643900261 0.64547643900261 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 16 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_S69QZAJR 0.542497788333405 0.542497788333405 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_SBFNFZ8B 3.30946793305326 3.30946793305326 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 41 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_SFKZSJN1 0.501977966877605 0.501977966877605 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 27 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_SM8VQFPD 2.90426967780508 2.90426967780508 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 13 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_T2QPMZCM 0.903808312942885 0.903808312942885 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 15 4 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_TG93XC55 3.12232219439727 3.12232219439727 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 120 18 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_TK84K675 -1.14024465137469 -1.14024465137469 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_V3Z3DB4N 0.928035977622253 0.928035977622253 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 21 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_VMMJYN8Z 2.33959689098127 2.33959689098127 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 49 11 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_VNE0ZPBS 2.75898519901412 2.75898519901412 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 56 10 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_VPMKHW9X 2.8652544891693 2.8652544891693 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 43 4 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_VTJ9ESSV 1.82627640568591 1.82627640568591 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 24 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_W18SF91A 0.243595524861717 0.243595524861717 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 27 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_W97QQYKQ 0.676256637087827 0.676256637087827 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_WCRKYV0T 2.97675733791211 2.97675733791211 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 125 17 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_WGK8ZMVA 0.218988545153557 0.218988545153557 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 7 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_X0F9AYEC 0.26780453053356 0.26780453053356 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 5 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_XJTW0P8P 2.69920467541433 2.69920467541433 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 72 10 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_Y7F9E2E9 -0.208885958500723 -0.208885958500723 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 16 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_YB2RXRHT 2.64949082134707 2.64949082134707 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 71 10 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_YEQVW4ND 1.9638840746652 1.9638840746652 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 20 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_YMAJC22S 2.27539556218159 2.27539556218159 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 56 7 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_YNEQJ6AH 1.56891756283607 1.56891756283607 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 12 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_Z1A875MW 2.04499769879763 2.04499769879763 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 29 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_Z2NWPQKF 1.26754064971675 1.26754064971675 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_Z6MC4N8D 0.682337447982684 0.682337447982684 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_ZH1FBX50 3.18100083635448 3.18100083635448 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 91 14 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_ZHHAM3AN -0.793970175226962 -0.793970175226962 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_ZR96A4FH 3.43743942701882 3.43743942701882 NA NA differentially expressed differentially expressed NA NA 3:55683794 3:55992250 ARRIBA in-frame 129 12 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_ZRM0W01M 0.581949612174132 0.581949612174132 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 17 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--ERC2 BS_ZZPBANDD 1.83473078524255 1.83473078524255 NA NA no change no change NA NA 3:55683794 3:55992250 ARRIBA in-frame 22 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA -ERC2--RAF1 BS_MY9D8XZ1 -0.709615977872377 -0.854688011606934 NA NA no change no change NA NA 3:56080817 3:12600415 ARRIBA in-frame 1 1 high [INTRACHROMOSOMAL[chr3:42.84Mb]],deletion ERC2 NA RAF1 NA Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -ERCC6--FTH1P12(3535)/RNU6-246P(12970) BS_VJ2S5DVS 5.91239393162892 -0.888827669112816 NA NA differentially expressed no change NA NA 10:49482687 9:15531218 ARRIBA frameshift 5 0 high [],translocation ERCC6 NA FTH1P12 RNU6-246P Oncogene NA NA NA NA -ERICH1--ERICH1 BS_JXF8A2A6 0.771567419284037 0.771567419284037 NA NA no change no change NA NA 8:656672 8:674047 ARRIBA other 2 1 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.12Mb]],duplication ERICH1 NA ERICH1 NA Oncogene Oncogene NA NA NA -ERICH3--ERICH3 BS_NGHK9RZP 0.375600814140208 0.375600814140208 NA NA no change no change NA NA 1:74589631 1:74606902 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing ERICH3 NA ERICH3 NA NA NA NA NA NA -ERMN--ROR2 BS_983Z6CA6 -0.529866537175657 3.09538345704035 NA NA no change differentially expressed NA NA 2:157321487 9:91769346 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr2--chr9]],translocation ERMN NA ROR2 NA NA Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA -ERN1--ATP8B1 BS_TW8DQH8J 1.47724519984033 2.75853825010059 NA NA no change differentially expressed NA NA 17:64129976 18:57706587 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr17--chr18]],translocation ERN1 NA ATP8B1 NA Kinase Oncogene NA NA NA -ESR2--CTAGE5 BS_K17VQECG 1.93215238732484 -0.428937576020336 NA NA no change no change NA NA 14:64213144 14:39388115 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr14:24.70Mb]],inversion ESR2 NA CTAGE5 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA -ESRRB--GPATCH2L BS_1EBQ3T20 1.52549727805705 5.7326333039012 NA NA no change differentially expressed NA NA 14:76310916 14:76154354 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr14:0.06Mb],LOCAL_REARRANGEMENT:+:[56272]],duplication ESRRB NA GPATCH2L NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA -ETFA--AC090164.4 BS_AZN38B7V 0.0863429836069218 NA NA NA no change NA NA NA 15:76231333 15:101527860 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr15:25.22Mb]],duplication ETFA NA AC090164.4 NA NA NA NA NA NA -ETFA--PCSK6 BS_AZN38B7V 0.0863429836069218 1.97006853573069 NA NA no change no change NA NA 15:76231333 15:101513963 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr15:24.99Mb]],duplication ETFA NA PCSK6 NA NA NA NA NA NA -ETFA--PCSK6 BS_AZN38B7V 0.0863429836069218 1.97006853573069 NA NA no change no change NA NA 15:76231333 15:101443660 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr15:24.99Mb]],duplication ETFA NA PCSK6 NA NA NA NA NA NA -ETNK1--SLC22A23 BS_K17VQECG 3.23191825024273 0.292642030939777 NA NA differentially expressed no change NA NA 12:22644022 6:3324002 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr12--chr6]],translocation ETNK1 NA SLC22A23 NA CosmicCensus, Kinase Oncogene NA NA NA -ETNK1--SLC22A23 BS_K17VQECG 3.23191825024273 0.292642030939777 NA NA differentially expressed no change NA NA 12:22659154 6:3324002 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation ETNK1 NA SLC22A23 NA CosmicCensus, Kinase Oncogene NA NA NA -ETNK1--SLC22A23 BS_K17VQECG 3.23191825024273 0.292642030939777 NA NA differentially expressed no change NA NA 12:22625586 6:3324002 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr6]],translocation ETNK1 NA SLC22A23 NA CosmicCensus, Kinase Oncogene NA NA NA -ETV3--ASH1L BS_W60RQAKK 1.7338584760195 2.87945751222729 NA NA no change differentially expressed NA NA 1:157135951 1:155418035 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:1.56Mb]],inversion/5'-5' ETV3 NA ASH1L NA Oncogene, TranscriptionFactor TranscriptionFactor NA NA NA -ETV4--CETP BS_3BDAG9YN 20.6185715053071 15.8607249941351 NA NA differentially expressed differentially expressed NA NA 17:43546185 16:56981647 ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr17--chr16]],translocation ETV4 NA CETP NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -EVA1C--AC139453.2(2293)/ALG1L6P(17241) BS_TK84K675 0.320511969032576 NA NA -0.271911608885513 no change NA NA no change 21:32428684 3:75397829 ARRIBA other 3 0 medium [],translocation EVA1C NA AC139453.2 ALG1L6P NA NA NA NA NA -EVC--STK32B BS_6HTK4YJP 14.5379686349655 1.67638148599656 NA NA differentially expressed no change NA NA 4:5745341 4:5498945 ARRIBA frameshift 9 1 high [CCLE,INTRACHROMOSOMAL[chr4:0.21Mb]],duplication EVC NA STK32B NA NA Kinase NA NA NA -EVI5--ABCD3 BS_1TWCV047 6.17718932238541 0.0969016476494348 NA NA differentially expressed no change NA NA 1:92605307 1:94458607 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:1.63Mb]],inversion EVI5 NA ABCD3 NA NA NA NA NA NA -EVI5--KRT8P37(58294)/CHCHD3P1(46533) BS_T1YHK6B7 5.83048977747422 4.74594857888643 NA -0.0444629336300016 differentially expressed differentially expressed NA no change 1:92563642 10:8573400 ARRIBA frameshift 2 0 medium [],translocation EVI5 NA KRT8P37 CHCHD3P1 NA NA NA NA NA -EVI5--NPM1P28(97142)/AC092925.1(155146) BS_GCQFGDTX 5.16899343314151 -0.201700773492068 NA NA differentially expressed no change NA NA 1:92784836 3:147688977 ARRIBA other 6 1 high [],translocation EVI5 NA NPM1P28 AC092925.1 NA NA NA NA NA -EVI5--NPM1P28(97142)/AC092925.1(155146) BS_GCQFGDTX 5.16899343314151 -0.201700773492068 NA NA differentially expressed no change NA NA 1:92784836 3:147688977 ARRIBA other 2 1 high [],translocation EVI5 NA NPM1P28 AC092925.1 NA NA NA NA NA -EVI5--ZIC1 BS_GCQFGDTX 5.16899343314151 2.00244736701512 NA NA differentially expressed differentially expressed NA NA 1:92784836 3:147507941 ARRIBA other 19 2 high [INTERCHROMOSOMAL[chr1--chr3]],translocation EVI5 NA ZIC1 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -EVI5L--CAMSAP3 BS_9SJWWYQ4 0.19234494873262 -0.219037209257017 NA NA no change no change NA NA 19:7830381 19:7605226 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr19:0.21Mb]],duplication EVI5L NA CAMSAP3 NA NA NA NA NA NA -EWSR1--AC013244.2 BS_QBR4WCQ2 -0.992620722535862 NA NA NA no change NA NA NA 22:29291173 12:50806312 ARRIBA other 5 0 low [INTERCHROMOSOMAL[chr22--chr12]],translocation/5'-5' EWSR1 NA AC013244.2 NA CosmicCensus, Oncogene NA NA NA NA -EWSR1--AC026477.1(196002)/AC108114.1(10326) BS_B1C6GZ84 0.604480325664079 NA NA NA no change NA NA NA 22:29292849 5:53403178 ARRIBA frameshift 4 0 medium [],translocation EWSR1 NA AC026477.1 AC108114.1 CosmicCensus, Oncogene NA NA NA NA -EWSR1--ATF1 BS_QBR4WCQ2 -0.992620722535862 3.21241829929844 NA NA no change differentially expressed NA NA 22:29288786 12:50809456 ARRIBA in-frame 3 0 medium [ChimerSeq,ChimerKB,Cosmic,Mitelman,ChimerPub,INTERCHROMOSOMAL[chr22--chr12]],translocation EWSR1 NA ATF1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -EWSR1--FLI1 BS_0448A413 0.145216157287144 3.45251406467608 NA NA no change differentially expressed NA NA 22:29292169 11:128781958 ARRIBA in-frame 6 0 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -EWSR1--FLI1 BS_1N9XZXGE -0.304383192183024 3.19568116732593 NA NA no change differentially expressed NA NA 22:29287134 11:128805366 ARRIBA in-frame 20 1 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -EWSR1--FLI1 BS_1N9XZXGE -0.304383192183024 3.19568116732593 NA NA no change differentially expressed NA NA 22:29289085 11:128790940 ARRIBA frameshift 19 3 medium [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -EWSR1--FLI1 BS_1N9XZXGE -0.304383192183024 3.19568116732593 NA NA no change differentially expressed NA NA 22:29288786 11:128805366 ARRIBA frameshift 1 1 medium [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -EWSR1--FLI1 BS_B9V8RGTA 0.326563147480939 4.25291256554405 NA NA no change differentially expressed NA NA 22:29287134 11:128805366 ARRIBA in-frame 51 3 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -EWSR1--FLI1 BS_B9V8RGTA 0.326563147480939 4.25291256554405 NA NA no change differentially expressed NA NA 22:29288786 11:128805366 ARRIBA frameshift 1 3 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -EWSR1--FLI1 BS_B9V8RGTA 0.326563147480939 4.25291256554405 NA NA no change differentially expressed NA NA 22:29287134 11:128807180 ARRIBA in-frame 1 1 medium [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -EWSR1--FLI1 BS_JFEZA9KE 0.115992581344481 3.82403634565776 NA NA no change differentially expressed NA NA 22:29292169 11:128809157 ARRIBA in-frame 6 2 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -EWSR1--FLI1 BS_JXF8A2A6 -0.363088069336966 3.14508610685544 NA NA no change differentially expressed NA NA 22:29287134 11:128805366 ARRIBA in-frame 20 2 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -EWSR1--FLI1 BS_PSNBFWQV 0.247259096066417 3.56737033843267 NA NA no change differentially expressed NA NA 22:29287134 11:128805366 ARRIBA in-frame 18 1 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -EWSR1--FLI1 BS_R4Y180DM -0.560904257193176 2.14860178415005 NA NA no change differentially expressed NA NA 22:29287134 11:128805366 ARRIBA in-frame 18 6 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -EWSR1--FLI1 BS_WJGFDRWK -0.223271325147637 3.46847223869888 NA NA no change differentially expressed NA NA 22:29287134 11:128805366 ARRIBA in-frame 13 0 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PLAGL1 BS_1HQ76V6D -0.0968120164783724 1.78228987357874 NA NA no change no change NA NA 22:29292050 6:143948185 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PLAGL1 BS_1HQ76V6D -0.0968120164783724 1.78228987357874 NA NA no change no change NA NA 22:29288786 6:143942663 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PLAGL1 BS_1HQ76V6D -0.0968120164783724 1.78228987357874 NA NA no change no change NA NA 22:29287134 6:143942663 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PLAGL1 BS_27QE6BV7 -1.20294640940025 1.35308887184032 NA NA no change no change NA NA 22:29290515 6:143942795 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PLAGL1 BS_27QE6BV7 -1.20294640940025 1.35308887184032 NA NA no change no change NA NA 22:29288786 6:143942663 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PLAGL1 BS_27QE6BV7 -1.20294640940025 1.35308887184032 NA NA no change no change NA NA 22:29287134 6:143942663 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PLAGL1 BS_KZPR01BD -0.699882273440283 2.33046661562807 NA NA no change differentially expressed NA NA 22:29288786 6:143942663 ARRIBA in-frame 7 0 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PLAGL1 BS_KZPR01BD -0.699882273440283 2.33046661562807 NA NA no change differentially expressed NA NA 22:29287134 6:143942663 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PLAGL1 BS_KZPR01BD -0.699882273440283 2.33046661562807 NA NA no change differentially expressed NA NA 22:29291006 6:143943027 ARRIBA other 3 0 low [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -EXOC1--AC016687.2 BS_1EBQ3T20 0.778148584783374 NA NA NA no change NA NA NA 4:55858447 4:33888950 ARRIBA frameshift 16 0 high [INTRACHROMOSOMAL[chr4:21.87Mb]],duplication EXOC1 NA AC016687.2 NA NA NA NA NA NA -EXOC1--AC016687.3 BS_1EBQ3T20 0.778148584783374 NA NA NA no change NA NA NA 4:55859662 4:33876242 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr4:21.81Mb]],duplication/5'-5' EXOC1 NA AC016687.3 NA NA NA NA NA NA -EXOC4--CHCHD3 BS_P0QF87WC 4.15697416997172 2.70766401854677 NA NA differentially expressed differentially expressed NA NA 7:133997633 7:133024627 ARRIBA frameshift 4 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr7:0.17Mb]],inversion EXOC4 NA CHCHD3 NA Oncogene TranscriptionFactor NA NA TCGAFusion -EXOC4--CHCHD3 BS_P0QF87WC 4.15697416997172 2.70766401854677 NA NA differentially expressed differentially expressed NA NA 7:133997633 7:132975286 ARRIBA in-frame 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr7:0.17Mb]],inversion EXOC4 NA CHCHD3 NA Oncogene TranscriptionFactor NA NA TCGAFusion -EXOC4--EXOC4 BS_1BWP5MCT 7.02773551563987 7.02773551563987 NA NA differentially expressed differentially expressed NA NA 7:133950415 7:133817325 ARRIBA other 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],inversion/3'-3' EXOC4 NA EXOC4 NA Oncogene Oncogene NA NA NA -EXOC6B--MYO7B BS_8NY9J9NQ -0.686001657878872 2.04239835127076 NA NA no change differentially expressed NA NA 2:72559453 2:127569789 ARRIBA frameshift 5 3 high [INTRACHROMOSOMAL[chr2:54.71Mb]],inversion EXOC6B NA MYO7B NA NA NA NA NA NA -EXOC6B--MYO7B BS_8NY9J9NQ -0.686001657878872 2.04239835127076 NA NA no change differentially expressed NA NA 2:72575492 2:127573920 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr2:54.71Mb]],inversion EXOC6B NA MYO7B NA NA NA NA NA NA -EYA1--EYA1 BS_49BQS7Z6 0.675440456763265 0.675440456763265 NA NA no change no change NA NA 8:71244603 8:71334174 ARRIBA frameshift 4 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.16Mb]],duplication/non-canonical_splicing EYA1 NA EYA1 NA NA NA NA NA NA -EYA1--EYA1 BS_4W1DBAN4 0.524930393683365 0.524930393683365 NA NA no change no change NA NA 8:71244603 8:71334174 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.16Mb]],duplication/non-canonical_splicing EYA1 NA EYA1 NA NA NA NA NA NA -EYA1--EYA1 BS_ENKG5GF3 0.221058662085094 0.221058662085094 NA NA no change no change NA NA 8:71244603 8:71334174 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.16Mb]],duplication/non-canonical_splicing EYA1 NA EYA1 NA NA NA NA NA NA -EYA1--EYA1 BS_NYS8TRCB 0.491927228119243 0.491927228119243 NA NA no change no change NA NA 8:71244603 8:71334174 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.16Mb]],duplication/non-canonical_splicing EYA1 NA EYA1 NA NA NA NA NA NA -EYA1--PHF20L1 BS_W72364MN 3.07103470181176 1.25264001215862 NA NA differentially expressed no change NA NA 8:71269740 8:132794410 ARRIBA frameshift 10 1 high [INTRACHROMOSOMAL[chr8:61.41Mb]],inversion EYA1 NA PHF20L1 NA NA NA NA NA NA -EYA2--EYA2 BS_D3YBV7KB 1.36246123876815 1.36246123876815 NA NA no change no change NA NA 20:47074335 20:47072185 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.29Mb]],duplication/non-canonical_splicing EYA2 NA EYA2 NA NA NA NA NA NA -EYA2--EYA2 BS_VNE0ZPBS 0.428909399488016 0.428909399488016 NA NA no change no change NA NA 20:47074335 20:47072185 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.29Mb]],duplication/non-canonical_splicing EYA2 NA EYA2 NA NA NA NA NA NA -EYA2--PITPNC1 BS_W4DB5RP1 2.32988444793762 2.47155762633986 NA NA differentially expressed differentially expressed NA NA 20:47172867 17:67532802 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr20--chr17]],translocation EYA2 NA PITPNC1 NA NA NA NA NA NA -EYS--EYS BS_09Z7TC35 63.1195881093005 63.1195881093005 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 56 7 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_1AYRM596 47.4298169834187 47.4298169834187 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 31 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_2SFTWNVE 26.9839421669022 26.9839421669022 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 15 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_3MYEMXPQ 22.542691092098 22.542691092098 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_3NWQXPQV 41.2010777904165 41.2010777904165 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 10 2 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_4PH1MBGR 32.4950266696595 32.4950266696595 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 23 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_61E80SD6 41.2295552729739 41.2295552729739 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 18 2 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_6T4JGBGY 66.8361869443907 66.8361869443907 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 164 28 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_70FFPA51 44.6447893035926 44.6447893035926 NA NA differentially expressed differentially expressed NA NA 6:64590223 6:64593309 ARRIBA frameshift 19 2 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_7FWZ518S 48.2568380224397 48.2568380224397 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 65 11 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_8NY9J9NQ 31.7497569162166 31.7497569162166 NA NA differentially expressed differentially expressed NA NA 6:64590223 6:64593309 ARRIBA frameshift 83 7 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_8S86CM61 39.2154174062243 39.2154174062243 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 16 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_9M5XJ10G 50.2749118580799 50.2749118580799 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 88 9 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_9NJHQE9F 41.7087599775893 41.7087599775893 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 25 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_9PB3XH5D 49.7607176582706 49.7607176582706 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 26 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_9V633J1X 51.5695316491031 51.5695316491031 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 28 4 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_A3QZB9Y2 25.9277205182687 25.9277205182687 NA NA differentially expressed differentially expressed NA NA 6:64590223 6:64593309 ARRIBA frameshift 51 5 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_CHDGRYHJ 49.5030725480973 49.5030725480973 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 22 14 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_E3BAT4C1 53.1739133037427 53.1739133037427 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 47 8 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_EFE4YEK3 43.8978445568265 43.8978445568265 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 44 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_ERWT0ZWE 50.4371988877625 50.4371988877625 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 66 2 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_GCQFGDTX 47.3860004312868 47.3860004312868 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 57 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_GNV89A5P 39.1931910819815 39.1931910819815 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 18 2 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_GS1KR5PK 45.9307965770842 45.9307965770842 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 13 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_HF3RNN2T 45.079841138473 45.079841138473 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 12 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_HHPA8NJ2 48.2759550865369 48.2759550865369 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 24 2 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_HKZENFDA 43.719680241577 43.719680241577 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 22 9 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_HZRM07TW 28.3945618746307 28.3945618746307 NA NA differentially expressed differentially expressed NA NA 6:64902113 6:64912743 ARRIBA in-frame 10 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_J60G8DMK 38.5135983794178 38.5135983794178 NA NA differentially expressed differentially expressed NA NA 6:64590223 6:64593309 ARRIBA frameshift 49 4 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_J8G4SH4Z 34.8648667594151 34.8648667594151 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 19 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_JAEM78XS 23.8663431305499 23.8663431305499 NA NA differentially expressed differentially expressed NA NA 6:64590223 6:64593309 ARRIBA frameshift 21 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_JFB984RG 50.3725315891179 50.3725315891179 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 26 2 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_KF0ZXDER 28.5235610210841 28.5235610210841 NA NA differentially expressed differentially expressed NA NA 6:64590223 6:64593309 ARRIBA frameshift 13 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_KVNGNETA 63.9663872373681 63.9663872373681 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 164 16 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_KYF0Q0E7 55.6835913123063 55.6835913123063 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 30 13 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_M026T44Q 31.1163280047129 31.1163280047129 NA NA differentially expressed differentially expressed NA NA 6:64590223 6:64593309 ARRIBA frameshift 21 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_M86ECPHK 52.7082169285667 52.7082169285667 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 72 4 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_MM20BVW9 32.0453201014122 32.0453201014122 NA NA differentially expressed differentially expressed NA NA 6:64590223 6:64593309 ARRIBA frameshift 13 2 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_NKRYMHEP 44.1000826977925 44.1000826977925 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 42 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_NZ71XCG3 36.0850832354356 36.0850832354356 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 17 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_Q2T9ZRM0 25.848821646594 25.848821646594 NA NA differentially expressed differentially expressed NA NA 6:64590223 6:64593309 ARRIBA frameshift 11 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_QEYPFYHD 31.3549944674597 31.3549944674597 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 42 5 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_QPPPGYP4 46.5984673948934 46.5984673948934 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 54 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_QW60M0FE 22.9265683986616 22.9265683986616 NA NA differentially expressed differentially expressed NA NA 6:64590223 6:64593309 ARRIBA frameshift 20 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_S1M423AB 54.3656825630981 54.3656825630981 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 69 6 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_SKGJ5SY9 55.3963641382907 55.3963641382907 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 39 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_TE0GVDNG 49.6705209407676 49.6705209407676 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 25 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_THSPSG2Z 28.1854111759638 28.1854111759638 NA NA differentially expressed differentially expressed NA NA 6:64590223 6:64593309 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_V9HVBBDW 58.7319246387597 58.7319246387597 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 55 6 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_VA5T4KAA 55.4633431085915 55.4633431085915 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 33 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_VVFBW0YH 45.3846875200234 45.3846875200234 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 18 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_W311713R 55.957023262914 55.957023262914 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 16 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_W72364MN 27.6881996948043 27.6881996948043 NA NA differentially expressed differentially expressed NA NA 6:64590223 6:64593309 ARRIBA frameshift 10 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_WMEHNDSK 45.1915389847817 45.1915389847817 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 20 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_X2QTK3QD 33.7306277318126 33.7306277318126 NA NA differentially expressed differentially expressed NA NA 6:64590223 6:64593309 ARRIBA frameshift 16 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_Y3G1X98S 22.9861385001447 22.9861385001447 NA NA differentially expressed differentially expressed NA NA 6:64590223 6:64593309 ARRIBA frameshift 8 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_Y8D1F5WW 34.4764320104936 34.4764320104936 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 32 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_YEB88D32 46.7685135034413 46.7685135034413 NA NA differentially expressed differentially expressed NA NA 6:64590223 6:64593309 ARRIBA frameshift 17 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_Z45HD492 60.3014834890252 60.3014834890252 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 53 5 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_Z7PKVY9J 32.8382262487684 32.8382262487684 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 9 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EYS--EYS BS_ZV68CES9 50.4371988877625 50.4371988877625 NA NA differentially expressed differentially expressed NA NA 6:65490594 6:65495993 ARRIBA frameshift 50 7 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA -EZR--PDE10A BS_1D6PZNKN 0.294892642273578 1.97011512794729 NA NA no change no change NA NA 6:158819317 6:165551156 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr6:6.51Mb]],inversion/5'-5' EZR NA PDE10A NA CosmicCensus NA NA NA NA -FADS2--CD74 BS_WG203ECV 3.03164844818859 2.80152497794984 NA NA differentially expressed differentially expressed NA NA 11:61848215 5:150406960 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr11--chr5]],translocation FADS2 NA CD74 NA NA CosmicCensus, Oncogene NA NA NA -FAF1--PRSS51 BS_40MP5BWR 0.171150700076021 0.355583020791457 NA NA no change no change NA NA 1:50475464 8:10483231 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr1--chr8]],translocation FAF1 NA PRSS51 NA NA NA NA NA NA -FAM107B--ADARB2 BS_84XCR9GG -0.852240456410863 -0.836323337041428 NA NA no change no change NA NA 10:14604240 10:1486633 ARRIBA other 12 0 high [INTRACHROMOSOMAL[chr10:12.78Mb]],inversion/5'-5' FAM107B NA ADARB2 NA NA Oncogene NA NA NA -FAM107B--FAM107B BS_N6NE6B3W 0.0368225453650597 0.0368225453650597 NA NA no change no change NA NA 10:14604240 10:14622174 ARRIBA other 29 2 high [SELFIE,INTRACHROMOSOMAL[chr10:0.26Mb]],duplication FAM107B NA FAM107B NA NA NA NA NA NA -FAM109A--ATXN2 BS_49FQXT2E 4.3573880324535 0.842507293639837 NA NA differentially expressed no change NA NA 12:111363041 12:111453845 ARRIBA in-frame 10 2 high [INTRACHROMOSOMAL[chr12:0.08Mb],LOCAL_REARRANGEMENT:-:[83093]],duplication FAM109A NA ATXN2 NA NA NA NA NA NA -FAM110B--CSMD1 BS_HZRM07TW 1.78957769441145 -1.6709180048611 NA NA no change no change NA NA 8:58075623 8:4282282 ARRIBA other 18 0 high [INTRACHROMOSOMAL[chr8:53.00Mb]],duplication/5'-5' FAM110B NA CSMD1 NA NA TumorSuppressorGene NA NA NA -FAM118B--AP006333.2 BS_FW5ECXXK 0.796092971868623 NA NA NA no change NA NA NA 11:126241044 11:64081692 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr11:62.12Mb]],duplication FAM118B NA AP006333.2 NA NA NA NA NA NA -FAM118B--YAP1(30405)/AP000942.1(31232) BS_D9GEXXHX 1.16332409986271 3.96489645292019 NA NA no change differentially expressed NA NA 11:126229293 11:102263828 ARRIBA other 2 0 medium [],duplication FAM118B NA YAP1 AP000942.1 NA TumorSuppressorGene, Oncogene NA NA NA -FAM118B--YAP1(30405)/AP000942.1(31232) BS_KR4MP5ET 1.85425407841019 3.94076203531845 NA NA no change differentially expressed NA NA 11:126229293 11:102263828 ARRIBA other 4 0 medium [],duplication FAM118B NA YAP1 AP000942.1 NA TumorSuppressorGene, Oncogene NA NA NA -FAM126A--CDK6 BS_479S95Q6 3.72954363188644 6.34397995692937 NA NA differentially expressed differentially expressed NA NA 7:22991061 7:92641959 ARRIBA frameshift 23 4 high [INTRACHROMOSOMAL[chr7:69.59Mb]],inversion/5'-5' FAM126A NA CDK6 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -FAM129B--RALGDS BS_0XEG6SNV 2.26588207400686 0.0899382594061848 NA NA differentially expressed no change NA NA 9:127568820 9:133112152 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr9:5.52Mb]],duplication FAM129B NA RALGDS NA NA CosmicCensus, Oncogene NA NA NA -FAM131A--TBC1D5 BS_7GJT4A6A 0.328759404409821 3.52931143102674 NA NA no change differentially expressed NA NA 3:184347032 3:17641209 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr3:166.59Mb]],inversion FAM131A NA TBC1D5 NA NA NA NA NA NA -FAM131B--BRAF BS_014EVM2D -1.10400924507091 1.67803191816588 NA NA no change no change NA NA 7:143360040 7:140787584 ARRIBA in-frame 5 1 high [ChimerPub,Cosmic,ChimerKB,INTRACHROMOSOMAL[chr7:2.43Mb]],deletion FAM131B NA BRAF NA CosmicCensus Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -FAM131B--BRAF BS_JKXA3FQC -0.972049658673086 1.3098198682233 NA NA no change no change NA NA 7:143360040 7:140787584 ARRIBA in-frame 10 1 high [ChimerPub,Cosmic,ChimerKB,INTRACHROMOSOMAL[chr7:2.43Mb]],deletion FAM131B NA BRAF NA CosmicCensus Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -FAM135B--FAM135B BS_063ERW0R 1.04580981901164 1.04580981901164 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_13CGKADW 1.83549003010567 1.83549003010567 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_1G3WYEN3 1.12875296786479 1.12875296786479 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_478TN841 1.10837788821166 1.10837788821166 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_52DAPP1Y 1.28649026087177 1.28649026087177 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_6MY8W3H0 1.89096405484759 1.89096405484759 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_7BTZQKYY 1.30754769257087 1.30754769257087 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_7FWZ518S 1.86248723488335 1.86248723488335 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_8F9BDWY4 -0.299791756476218 -0.299791756476218 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_8RHPJ740 1.73351553135441 1.73351553135441 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_AGTPCRR4 1.57428020777411 1.57428020777411 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_CREQ97QC 1.82574773328825 1.82574773328825 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_EHVYJAVA 0.770819117176645 0.770819117176645 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_ERJAJ0KA 0.432433200738042 0.432433200738042 NA NA no change no change NA NA 8:138242942 8:138256759 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_FJZPQZ2C 0.294355757649903 0.294355757649903 NA NA no change no change NA NA 8:138242942 8:138256759 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_HCP5C912 0.913637284899852 0.913637284899852 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_K5802F84 0.627046516674576 0.627046516674576 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_KQ6ZW085 1.29177809725197 1.29177809725197 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_N6NE6B3W 2.52278768558364 2.52278768558364 NA NA differentially expressed differentially expressed NA NA 8:138151194 8:138153216 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_P44PE00R 2.07844565203401 2.07844565203401 NA NA differentially expressed differentially expressed NA NA 8:138151194 8:138153216 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_QNAQGAV6 1.7580422048433 1.7580422048433 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_QV51J756 1.40181323665606 1.40181323665606 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_S69QZAJR 0.836854728993941 0.836854728993941 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM135B--FAM135B BS_ZZWMD6FA 0.657503364142687 0.657503364142687 NA NA no change no change NA NA 8:138151194 8:138153216 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA -FAM149A--AC007741.1 BS_P9JP6JFA -3.27207361788918 NA NA NA differentially expressed NA NA NA 4:186138823 2:65790104 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr4--chr2]],translocation FAM149A NA AC007741.1 NA NA NA NA NA NA -FAM149A--LINC01060 BS_X91K8KMG 0.332010635479512 4.82255868210792 NA NA no change differentially expressed NA NA 4:186149704 4:188485779 ARRIBA frameshift 10 1 high [INTRACHROMOSOMAL[chr4:2.23Mb]],deletion FAM149A NA LINC01060 NA NA NA NA NA NA -FAM149A--LINC01060 BS_X91K8KMG 0.332010635479512 4.82255868210792 NA NA no change differentially expressed NA NA 4:186105642 4:188485779 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:2.23Mb]],deletion FAM149A NA LINC01060 NA NA NA NA NA NA -FAM149A--LINC01060 BS_X91K8KMG 0.332010635479512 4.82255868210792 NA NA no change differentially expressed NA NA 4:186149283 4:188485779 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:2.23Mb]],deletion FAM149A NA LINC01060 NA NA NA NA NA NA -FAM155A--SPRY2 BS_4QW2S1Q8 -0.16741921766502 1.82911314374198 NA NA no change no change NA NA 13:107865682 13:80337756 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr13:26.82Mb]],deletion FAM155A NA SPRY2 NA NA TumorSuppressorGene NA NA NA -FAM155A--SPRY2 BS_MX23ZY0Y 0.42351897265262 3.76548339520936 NA NA no change differentially expressed NA NA 13:107865682 13:80337756 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr13:26.82Mb]],deletion FAM155A NA SPRY2 NA NA TumorSuppressorGene NA NA NA -FAM160A2--NUP160(44006)/AC023232.1(12762) BS_MN5XVP5A 0.252936111623945 1.50608241753184 NA NA no change no change NA NA 11:6234543 11:47892561 ARRIBA other 4 0 medium [],inversion FAM160A2 NA NUP160 AC023232.1 NA NA NA NA NA -FAM161B--BVES BS_S6S7SK3P -1.01534522106475 1.59436951388359 NA NA no change no change NA NA 14:73944335 6:105101213 ARRIBA in-frame 1 1 high [INTERCHROMOSOMAL[chr14--chr6]],translocation FAM161B NA BVES NA NA NA NA NA NA -FAM161B--BVES BS_S6S7SK3P -1.01534522106475 1.59436951388359 NA NA no change no change NA NA 14:73943353 6:105114424 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr14--chr6]],translocation FAM161B NA BVES NA NA NA NA NA NA -FAM167A--RASGEF1A BS_S6S7SK3P -1.40204577662354 -2.60407123180175 NA NA no change differentially expressed NA NA 8:11444031 10:43220912 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr8--chr10]],translocation/5'-5' FAM167A NA RASGEF1A NA NA NA NA NA NA -FAM171A1--FAM171A1 BS_4T0HPZDC -1.06637221182708 -1.06637221182708 NA NA no change no change NA NA 10:15248639 10:15284105 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.16Mb]],duplication/non-canonical_splicing FAM171A1 NA FAM171A1 NA NA NA NA NA NA -FAM171A1--FRMD4A BS_Z8F3GM85 -0.439033670941832 2.19517880854631 NA NA no change differentially expressed NA NA 10:15370956 10:13675044 ARRIBA in-frame 13 0 high [INTRACHROMOSOMAL[chr10:0.75Mb]],deletion FAM171A1 NA FRMD4A NA NA NA NA NA NA -FAM171B--AC010745.1(3994)/AC010745.2(15827) BS_29X4ZX6Q 5.33611940329229 13.4234245456953 NA 27.1423314559381 differentially expressed differentially expressed NA differentially expressed 2:186743575 2:16208220 ARRIBA frameshift 9 2 medium [],inversion FAM171B NA AC010745.1 AC010745.2 NA NA NA NA NA -FAM184B--FAM184B BS_401R3KV0 0.841328595075359 0.841328595075359 NA NA no change no change NA NA 4:17652830 4:17660087 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.15Mb]],duplication/non-canonical_splicing FAM184B NA FAM184B NA NA NA NA NA NA -FAM192A--ABCD2 BS_VJ2S5DVS -0.00729173485457389 -0.997601422357057 NA NA no change no change NA NA 16:57153182 12:39557678 ARRIBA other 7 1 medium [INTERCHROMOSOMAL[chr16--chr12]],translocation/5'-5' FAM192A NA ABCD2 NA NA NA NA NA NA -FAM196B--FAM196B BS_WRQHPSXQ 5.52022909994583 5.52022909994583 NA NA differentially expressed differentially expressed NA NA 5:169881368 5:169884816 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.12Mb]],duplication/non-canonical_splicing FAM196B NA FAM196B NA NA NA NA NA NA -FAM196B--FAM196B BS_XJTW0P8P 3.49789667726781 3.49789667726781 NA NA differentially expressed differentially expressed NA NA 5:169881368 5:169884816 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.12Mb]],duplication/non-canonical_splicing FAM196B NA FAM196B NA NA NA NA NA NA -FAM198A--GPR160 BS_FAQQ0GCQ 0.519749290840046 2.39953618944986 NA NA no change differentially expressed NA NA 3:42979645 3:170038915 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr3:126.98Mb]],deletion FAM198A NA GPR160 NA NA NA NA NA NA -FAM19A1--SUCLG2-AS1 BS_JG9JZTA9 -1.02971576000608 5.0659744379615 NA NA no change differentially expressed NA NA 3:68417420 3:67840022 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:0.06Mb],LOCAL_REARRANGEMENT:+:[56503]],duplication FAM19A1 NA SUCLG2-AS1 NA NA NA NA NA NA -FAM19A5--KIF25 BS_1HQ76V6D -1.2850899370929 1.81484415762475 NA NA no change no change NA NA 22:48489704 6:168017973 ARRIBA frameshift 13 1 high [INTERCHROMOSOMAL[chr22--chr6]],translocation FAM19A5 NA KIF25 NA NA NA NA NA NA -FAM19A5--KIF25 BS_1HQ76V6D -1.2850899370929 1.81484415762475 NA NA no change no change NA NA 22:48576571 6:168017973 ARRIBA frameshift 1 2 high [INTERCHROMOSOMAL[chr22--chr6]],translocation FAM19A5 NA KIF25 NA NA NA NA NA NA -FAM208A--ROBO2 BS_7GJT4A6A 0.315652045707434 1.98602093625944 NA NA no change no change NA NA 3:56666260 3:77642671 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr3:19.22Mb]],inversion FAM208A NA ROBO2 NA NA CosmicCensus NA NA NA -FAM208B--AC079950.1 BS_HZ707C55 -1.84905494171529 NA NA NA no change NA NA NA 10:5685175 12:45519153 ARRIBA other 20 1 high [INTERCHROMOSOMAL[chr10--chr12]],translocation FAM208B NA AC079950.1 NA NA NA NA NA NA -FAM208B--AC079950.1 BS_HZ707C55 -1.84905494171529 NA NA NA no change NA NA NA 10:5692918 12:45519153 ARRIBA other 2 1 high [INTERCHROMOSOMAL[chr10--chr12]],translocation FAM208B NA AC079950.1 NA NA NA NA NA NA -FAM20C--TRAPPC9 BS_K2VYFVKZ 4.31992417216347 0.865534419944339 NA NA differentially expressed no change NA NA 7:195732 8:140405698 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr7--chr8]],translocation FAM20C NA TRAPPC9 NA NA NA NA NA NA -FAM216A--VPS29 BS_F5BZSF3Q -3.09655743922877 0.285524009627816 NA NA differentially expressed no change NA NA 12:110488909 12:110493231 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[712]],duplication/3'-3' FAM216A NA VPS29 NA NA NA NA NA NA -FAM222B--AC002094.1 BS_FCAKKZ20 4.20927714154586 NA NA NA differentially expressed NA NA NA 17:28766586 17:28381203 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr17:0.37Mb]],inversion FAM222B NA AC002094.1 NA NA NA NA NA NA -FAM222B--AC005412.3 BS_HKZENFDA 0.727264814294996 NA NA NA no change NA NA NA 17:28766586 17:29197799 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr17:0.34Mb]],duplication FAM222B NA AC005412.3 NA NA NA NA NA NA -FAM222B--SARM1 BS_FCAKKZ20 4.20927714154586 5.17432542063141 NA NA differentially expressed differentially expressed NA NA 17:28766586 17:28381203 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr17:0.35Mb]],inversion FAM222B NA SARM1 NA NA NA NA NA NA -FAM228A--FAM228B BS_1EBQ3T20 -1.14035266066021 -0.198309841184485 NA NA no change no change NA NA 2:24183645 2:24135119 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[5429]],duplication FAM228A NA FAM228B NA NA NA NA NA NA -FAM228A--FAM228B BS_E4QK839R 0.163145662166288 -2.52847170721761 NA NA no change differentially expressed NA NA 2:24183645 2:24164198 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[5429]],duplication FAM228A NA FAM228B NA NA NA NA NA NA -FAM228A--FAM228B BS_E4QK839R 0.163145662166288 -2.52847170721761 NA NA no change differentially expressed NA NA 2:24183645 2:24135119 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[5429]],duplication FAM228A NA FAM228B NA NA NA NA NA NA -FAM228A--FAM228B BS_K5802F84 0.414065603125923 -0.652853533566632 NA NA no change no change NA NA 2:24183645 2:24135119 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[5429]],duplication FAM228A NA FAM228B NA NA NA NA NA NA -FAM228A--FAM228B BS_K5802F84 0.414065603125923 -0.652853533566632 NA NA no change no change NA NA 2:24190553 2:24135119 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[5429]],duplication FAM228A NA FAM228B NA NA NA NA NA NA -FAM49A--AC010145.1 BS_ZXYDSBM9 0.891381650769836 NA NA NA no change NA NA NA 2:16588050 2:15997609 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:0.49Mb]],deletion FAM49A NA AC010145.1 NA Oncogene NA NA NA NA -FAM49A--MYCNOS BS_ZXYDSBM9 0.891381650769836 17.2534643854775 NA NA no change differentially expressed NA NA 2:16588050 2:15941097 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.61Mb]],deletion FAM49A NA MYCNOS NA Oncogene NA NA NA NA -FAM49A--RN7SL104P(36541)/AC010145.1(9527) BS_ZXYDSBM9 0.891381650769836 NA NA NA no change NA NA NA 2:16588050 2:15987522 ARRIBA frameshift 4 0 medium [],deletion FAM49A NA RN7SL104P AC010145.1 Oncogene NA NA NA NA -FAM49B--ADCY8 BS_WMEHNDSK 1.15613287511861 -1.14211261321876 NA NA no change no change NA NA 8:129850575 8:131030635 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr8:0.76Mb]],duplication FAM49B NA ADCY8 NA NA NA NA NA NA -FAM49B--ADCY8(34695)/AC087341.1(53267) BS_WMEHNDSK 1.15613287511861 -1.14211261321876 NA NA no change no change NA NA 8:130016370 8:131077121 ARRIBA other 3 1 high [],inversion FAM49B NA ADCY8 AC087341.1 NA NA NA NA NA -FAM49B--ASAP1 BS_EYYMKWB7 -0.396502227129044 2.82406675196142 NA NA no change differentially expressed NA NA 8:129846804 8:130112322 ARRIBA frameshift 2 0 low [ChimerSeq,CCLE,FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.03Mb],LOCAL_REARRANGEMENT:-:[34975]],duplication FAM49B NA ASAP1 NA NA NA NA NA TCGAFusion -FAM71F2--AC018638.3(30)/FAM71F2(2366) BS_SXCZ3CXN -0.210883110400856 NA NA -0.210883110400856 no change NA NA no change 7:128683255 7:128669922 ARRIBA frameshift 2 0 medium [],duplication FAM71F2 NA AC018638.3 FAM71F2 NA NA NA NA NA -FAM81A--FAM81A BS_92VDQ0NE 0.723041295190769 0.723041295190769 NA NA no change no change NA NA 15:59516840 15:59514289 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.15Mb]],duplication/non-canonical_splicing FAM81A NA FAM81A NA NA NA NA NA NA -FAM81B--MCTP1 BS_6G6C7VPX -0.558631857919664 -0.614251721892252 NA NA no change no change NA NA 5:95423469 5:95017484 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr5:0.11Mb]],deletion/3'-3' FAM81B NA MCTP1 NA NA NA NA NA NA -FAM89B--C11orf95 BS_FTKPQ5FZ -1.42342444887255 6.18489671018741 NA NA no change differentially expressed NA NA 11:65572748 11:63764531 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr11:1.80Mb]],inversion FAM89B NA C11orf95 NA NA NA NA NA NA -FAM90A1--AL365255.1 BS_RCCN63K6 -1.87261505598154 NA NA NA no change NA NA NA 12:8227567 1:5565523 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr12--chr1]],translocation/3'-3' FAM90A1 NA AL365255.1 NA NA NA NA NA NA -FAN1--AC087481.2 BS_N6NE6B3W 0.316026390449829 NA NA NA no change NA NA NA 15:30914091 15:30899483 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_REARRANGEMENT:+:[3525]],duplication FAN1 NA AC087481.2 NA NA NA NA NA NA -FANCC--FANCC BS_1EBQ3T20 2.41042943399826 2.41042943399826 NA NA differentially expressed differentially expressed NA NA 9:95149923 9:95249369 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.33Mb]],duplication/non-canonical_splicing FANCC NA FANCC NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -FANCC--FANCC BS_MKM0EEN1 1.38851992457729 1.38851992457729 NA NA no change no change NA NA 9:95107066 9:95117390 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.33Mb]],duplication/non-canonical_splicing FANCC NA FANCC NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -FANCD2--DOCK3 BS_6JHXXVR7 3.29451227245733 -3.55534499603569 NA NA differentially expressed differentially expressed NA NA 3:10078197 3:51279825 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr3:40.57Mb]],inversion/3'-3' FANCD2 NA DOCK3 NA CosmicCensus, Oncogene NA NA NA NA -FANK1--CAMK1D BS_HZ707C55 2.42241517290701 0.737748878914648 NA NA differentially expressed no change NA NA 10:125896655 10:12666736 ARRIBA frameshift 17 0 high [INTRACHROMOSOMAL[chr10:113.06Mb]],duplication FANK1 NA CAMK1D NA NA Kinase, Kinase NA NA NA -FARSA--ERCC2 BS_8ZS9F31R 1.37931794162161 3.1596950122702 NA NA no change differentially expressed NA NA 19:12928342 19:45370635 ARRIBA in-frame 5 1 high [INTRACHROMOSOMAL[chr19:32.42Mb]],duplication FARSA NA ERCC2 NA NA CosmicCensus, Oncogene NA NA NA -FASTKD5--AL109837.2(23947)/AL109837.1(42842) BS_B61168DE 1.76576558571119 NA NA NA no change NA NA NA 20:3148309 20:11565594 ARRIBA frameshift 18 1 medium [],inversion FASTKD5 NA AL109837.2 AL109837.1 NA NA NA NA NA -FAT1--SNX25 BS_2EMW8ZG3 3.8395958694308 -0.519557485361182 NA NA differentially expressed no change NA NA 4:186633684 4:185274005 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr4:1.22Mb]],deletion/5'-5' FAT1 NA SNX25 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -FAT2--AGAP3 BS_S69QZAJR 1.62735448535151 -0.420832303599566 NA NA no change no change NA NA 5:151507582 7:151086546 ARRIBA frameshift 1 2 medium [INTERCHROMOSOMAL[chr5--chr7]],translocation FAT2 NA AGAP3 NA Oncogene NA NA NA NA -FAT2--SLC36A1 BS_K5802F84 -0.601469504183841 0.404232084999663 NA NA no change no change NA NA 5:151556058 5:151458788 ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_INVERSION:-:+:[11712]],duplication/3'-3' FAT2 NA SLC36A1 NA Oncogene NA NA NA NA -FAT2--SLC36A1 BS_M1PVEHCM -0.61201486208741 0.853913161315678 NA NA no change no change NA NA 5:151556058 5:151458788 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_INVERSION:-:+:[11712]],duplication/3'-3' FAT2 NA SLC36A1 NA Oncogene NA NA NA NA -FAT3--MIR100HG BS_KBT7MQ6H 2.63650720650311 5.07628465569548 NA NA differentially expressed differentially expressed NA NA 11:92355404 11:122418165 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr11:29.13Mb]],deletion/5'-5' FAT3 NA MIR100HG NA CosmicCensus NA NA NA NA -FAT3--NDUFB11P1(14053)/FAT3(1547) BS_7BTZQKYY 3.93561735395327 -0.18635853916265 NA 3.93561735395327 differentially expressed no change NA differentially expressed 11:92524948 11:92350549 ARRIBA frameshift 5 0 medium [],duplication FAT3 NA NDUFB11P1 FAT3 CosmicCensus NA NA CosmicCensus NA -FBLN5--PRIMA1(55427)/AL132642.2(51854) BS_ZVZDDW2G 1.29357252821259 0.432437816514502 NA NA no change no change NA NA 14:91936947 14:93843908 ARRIBA frameshift 7 1 high [],duplication FBLN5 NA PRIMA1 AL132642.2 NA NA NA NA NA -FBN2--FBN2 BS_FQX1PRAJ 30.4298135419837 30.4298135419837 NA NA differentially expressed differentially expressed NA NA 5:128464724 5:128530693 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.40Mb]],duplication/non-canonical_splicing FBN2 NA FBN2 NA NA NA NA NA NA -FBXL13--FBXL13 BS_B741RZY9 12.7084361964394 12.7084361964394 NA NA differentially expressed differentially expressed NA NA 7:102913086 7:103029418 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.26Mb]],duplication/non-canonical_splicing FBXL13 NA FBXL13 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -FBXL14--CACNA1C BS_W644VEVE 10.8994841953468 -1.49491098309613 NA NA differentially expressed no change NA NA 12:1566752 12:2457567 ARRIBA in-frame 84 19 high [INTRACHROMOSOMAL[chr12:0.38Mb]],inversion FBXL14 NA CACNA1C NA NA NA NA NA NA -FBXL14--CACNA1C BS_W644VEVE 10.8994841953468 -1.49491098309613 NA NA differentially expressed no change NA NA 12:1592915 12:2457567 ARRIBA frameshift 31 7 medium [INTRACHROMOSOMAL[chr12:0.38Mb]],inversion FBXL14 NA CACNA1C NA NA NA NA NA NA -FBXL14--CACNA1C BS_W644VEVE 10.8994841953468 -1.49491098309613 NA NA differentially expressed no change NA NA 12:1592873 12:2457567 ARRIBA frameshift 20 10 medium [INTRACHROMOSOMAL[chr12:0.38Mb]],inversion FBXL14 NA CACNA1C NA NA NA NA NA NA -FBXL14--TSPAN9 BS_W644VEVE 10.8994841953468 1.93250949774353 NA NA differentially expressed no change NA NA 12:1592915 12:3278421 ARRIBA in-frame 170 23 high [INTRACHROMOSOMAL[chr12:1.48Mb]],inversion FBXL14 NA TSPAN9 NA NA NA NA NA NA -FBXL14--TSPAN9 BS_W644VEVE 10.8994841953468 1.93250949774353 NA NA differentially expressed no change NA NA 12:1592873 12:3278421 ARRIBA in-frame 65 31 medium [INTRACHROMOSOMAL[chr12:1.48Mb]],inversion FBXL14 NA TSPAN9 NA NA NA NA NA NA -FBXL14--TSPAN9 BS_W644VEVE 10.8994841953468 1.93250949774353 NA NA differentially expressed no change NA NA 12:1592915 12:3278992 ARRIBA in-frame 1 4 medium [INTRACHROMOSOMAL[chr12:1.48Mb]],inversion FBXL14 NA TSPAN9 NA NA NA NA NA NA -FBXL14--TSPAN9 BS_W644VEVE 10.8994841953468 1.93250949774353 NA NA differentially expressed no change NA NA 12:1592915 12:3280382 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:1.48Mb]],inversion FBXL14 NA TSPAN9 NA NA NA NA NA NA -FBXL5--AC098829.1 BS_9NJHQE9F 1.23564370695992 NA NA NA no change NA NA NA 4:15612266 4:15017881 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr4:0.18Mb]],deletion FBXL5 NA AC098829.1 NA NA NA NA NA NA -FBXL5--AC098829.1 BS_9NJHQE9F 1.23564370695992 NA NA NA no change NA NA NA 4:15612266 4:15066397 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.18Mb]],deletion FBXL5 NA AC098829.1 NA NA NA NA NA NA -FBXL7--CDH4 BS_D9GEXXHX 3.12389077222007 -1.8940610195433 NA NA differentially expressed no change NA NA 5:15616072 20:61743563 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr5--chr20]],translocation FBXL7 NA CDH4 NA Oncogene TumorSuppressorGene NA NA NA -FBXO11--Y_RNA(193)/FMNL2(50584) BS_RRAEQZ97 0.308979321372668 9.75616860301682 NA -0.761305715776389 no change differentially expressed NA no change 2:47813234 2:152284653 ARRIBA frameshift 4 0 high [],duplication FBXO11 NA Y_RNA FMNL2 CosmicCensus NA NA NA NA -FBXO3--PDHX BS_49FQXT2E -0.77600953674297 -0.303204124857757 NA NA no change no change NA NA 11:33748777 11:35017015 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr11:1.14Mb]],inversion FBXO3 NA PDHX NA NA NA NA NA NA -FBXW2--AC073172.1 BS_VNWKNRY4 3.35496683949566 NA NA NA differentially expressed NA NA NA 9:120772754 11:15614130 ARRIBA frameshift 25 4 high [INTERCHROMOSOMAL[chr9--chr11]],translocation/5'-5' FBXW2 NA AC073172.1 NA NA NA NA NA NA -FCGR2A--BCAN BS_KE56MMY0 3.08789004982139 -2.22211720422719 NA NA differentially expressed differentially expressed NA NA 1:161513708 1:156647113 ARRIBA other 7 0 medium [INTRACHROMOSOMAL[chr1:4.85Mb]],duplication FCGR2A NA BCAN NA NA NA NA NA NA -FCHSD2--AP003774.2(15598)/AP003774.1(806) BS_FW5ECXXK -1.25770037238198 NA NA 0.318929589375437 no change NA NA no change 11:72900257 11:64448268 ARRIBA frameshift 1 1 medium [],deletion FCHSD2 NA AP003774.2 AP003774.1 NA NA NA NA NA -FDFT1--LINC01606 BS_W644VEVE 1.45596492777941 26.1259707977155 NA NA no change differentially expressed NA NA 8:11809850 8:57150758 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr8:45.30Mb]],inversion/3'-3' FDFT1 NA LINC01606 NA NA NA NA NA NA -FERMT1--SDCBP2-AS1 BS_B61168DE -2.08760722526933 4.36509596642823 NA NA differentially expressed differentially expressed NA NA 20:6120393 20:1326461 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr20:4.70Mb]],deletion/5'-5' FERMT1 NA SDCBP2-AS1 NA NA NA NA NA NA -FERMT2--DHRS7 BS_K17VQECG 2.207489807326 0.959224154338877 NA NA differentially expressed no change NA NA 14:52919123 14:60156152 ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr14:7.19Mb]],duplication FERMT2 NA DHRS7 NA NA NA NA NA NA -FEZF2--FEZF2(22899)/CADPS(1123) BS_ERWT0ZWE 0.678052775363706 0.678052775363706 NA 3.20188709580415 no change no change NA differentially expressed 3:62374298 3:62397223 ARRIBA other 5 0 high [],duplication FEZF2 NA FEZF2 CADPS TranscriptionFactor TranscriptionFactor NA NA NA -FGF12--MME BS_FAQQ0GCQ -0.157237712897883 -0.401515822860587 NA NA no change no change NA NA 3:192727181 3:155060817 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:36.96Mb]],deletion/5'-5' FGF12 NA MME NA Oncogene TumorSuppressorGene, Oncogene NA NA NA -FGF14--ESRRG(121500)/GPATCH2(167737) BS_1D6PZNKN 0.763260337450393 1.73019604585085 NA 1.84045427593537 no change no change NA no change 13:102401471 1:217259255 ARRIBA frameshift 3 0 high [],translocation FGF14 NA ESRRG GPATCH2 Oncogene Oncogene, TranscriptionFactor NA NA NA -FGF14--UBAC2 BS_VJ2S5DVS -1.59996010156886 2.15451218922236 NA NA no change differentially expressed NA NA 13:102401471 13:99238427 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr13:2.32Mb]],inversion FGF14 NA UBAC2 NA Oncogene NA NA NA NA -FGF2--AP003715.1(182862)/AP002428.1(72315) BS_RQSKD7PN 1.75922802413276 NA NA NA no change NA NA NA 4:122876424 11:98866597 ARRIBA frameshift 11 2 high [],translocation FGF2 NA AP003715.1 AP002428.1 Oncogene NA NA NA NA -FGF2--AP003715.1(214825)/AP002428.1(40352) BS_RQSKD7PN 1.75922802413276 NA NA NA no change NA NA NA 4:122876424 11:98898560 ARRIBA frameshift 3 0 medium [],translocation FGF2 NA AP003715.1 AP002428.1 Oncogene NA NA NA NA -FGF4--AP003071.5 BS_23QW0BBA 256.43691999207 NA NA NA differentially expressed NA NA NA 11:69774856 11:69157174 ARRIBA other 7 0 medium [INTRACHROMOSOMAL[chr11:0.61Mb]],duplication/3'-3' FGF4 NA AP003071.5 NA Oncogene NA NA NA NA -FGF6--WWC3 BS_49FQXT2E 38.1532511908995 1.62763451402893 NA NA differentially expressed no change NA NA 12:4444133 X:10063445 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chrX]],translocation FGF6 NA WWC3 NA Oncogene NA NA NA NA -FGFR1--AC123767.1 BS_PK18H7E7 1.67821067852888 NA NA NA no change NA NA NA 8:38467981 8:39531605 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:1.05Mb]],inversion FGFR1 NA AC123767.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -FGFR1--ADAM3A BS_PK18H7E7 1.67821067852888 -0.177120030386907 NA NA no change no change NA NA 8:38467981 8:39471598 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr8:0.98Mb]],inversion/5'-5' FGFR1 NA ADAM3A NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -FGFR1--HERC6 BS_TYAYZ9ZW -0.725681342616348 -0.498287537724599 NA NA no change no change NA NA 8:38413918 4:88385499 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr8--chr4]],translocation FGFR1 NA HERC6 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -FGFR1--TACC1 BS_1D6PZNKN 4.20212328302906 2.8282523643421 NA NA differentially expressed differentially expressed NA NA 8:38413918 8:38836162 ARRIBA in-frame 413 56 high [ChimerSeq,ChimerKB,Cosmic,INTRACHROMOSOMAL[chr8:0.26Mb]],inversion FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA -FGFR1--TACC1 BS_3T6X4BPC 1.86569205686232 3.26558631231877 NA NA no change differentially expressed NA NA 8:38413918 8:38836162 ARRIBA in-frame 32 4 high [ChimerSeq,ChimerKB,Cosmic,INTRACHROMOSOMAL[chr8:0.26Mb]],inversion FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA -FGFR1--TACC1 BS_8F9BDWY4 2.64184026875163 3.77953893003995 NA NA differentially expressed differentially expressed NA NA 8:38413918 8:38836162 ARRIBA in-frame 370 54 high [ChimerSeq,ChimerKB,Cosmic,INTRACHROMOSOMAL[chr8:0.26Mb]],inversion FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA -FGFR1--TACC1 BS_TDEFAPNH 1.88385285406245 2.5274903204582 NA NA no change differentially expressed NA NA 8:38413918 8:38836162 ARRIBA in-frame 119 13 high [ChimerSeq,ChimerKB,Cosmic,INTRACHROMOSOMAL[chr8:0.26Mb]],inversion FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA -FGFR1OP2--AC092593.1(36139)/U6(6646) BS_MN5XVP5A -0.399569773890492 NA NA -0.0294627825494395 no change NA NA no change 12:26938710 4:29503989 ARRIBA other 10 1 high [],translocation FGFR1OP2 NA AC092593.1 U6 NA NA NA NA NA -FGFR1OP2--AC092593.1(36139)/U6(6646) BS_RCCN63K6 -0.193991664645135 NA NA -0.0294627825494395 no change NA NA no change 12:26938710 4:29503989 ARRIBA other 13 0 high [],translocation FGFR1OP2 NA AC092593.1 U6 NA NA NA NA NA -FGFR1OP2--AC092593.1(36139)/U6(6646) BS_RCCN63K6 -0.193991664645135 NA NA -0.0294627825494395 no change NA NA no change 12:26938710 4:29503989 ARRIBA other 2 0 medium [],translocation FGFR1OP2 NA AC092593.1 U6 NA NA NA NA NA -FGFR2--CTNNA3 BS_W6AC5J3C 2.08959768666655 4.87582943065148 NA NA differentially expressed differentially expressed NA NA 10:121483698 10:66103249 ARRIBA in-frame 540 97 high [INTRACHROMOSOMAL[chr10:53.78Mb]],deletion FGFR2 NA CTNNA3 NA Kinase, CosmicCensus, Oncogene, Kinase TumorSuppressorGene NA NA NA -FGFR2--INA BS_CREQ97QC 0.994320071146606 0.094752964535984 NA NA no change no change NA NA 10:121483698 10:103287035 ARRIBA in-frame 116 6 high [INTRACHROMOSOMAL[chr10:18.19Mb]],inversion FGFR2 NA INA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -FGFR2--SHTN1 BS_AKRHBPNZ 0.80343970516797 -0.836270432838888 NA NA no change no change NA NA 10:121483698 10:116948997 ARRIBA in-frame 26 2 high [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr10:4.35Mb]],deletion FGFR2 NA SHTN1 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus NA NA NA -FGFR2--SHTN1 BS_F4E8R9VY 0.702908257319563 -1.0401099811826 NA NA no change no change NA NA 10:121483698 10:116948997 ARRIBA in-frame 22 1 high [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr10:4.35Mb]],deletion FGFR2 NA SHTN1 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus NA NA NA -FGFR4--PLXNB1 BS_K81DR8XG 7.17882170974798 -0.121708807185699 NA NA differentially expressed no change NA NA 5:177089940 3:48413169 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr5--chr3]],translocation FGFR4 NA PLXNB1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA -FHAD1--FHAD1 BS_0BXY0F9N 4.40860476824867 4.40860476824867 NA NA differentially expressed differentially expressed NA NA 1:15369502 1:15367463 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA -FHAD1--FHAD1 BS_34201DKZ 7.1246805362385 7.1246805362385 NA NA differentially expressed differentially expressed NA NA 1:15369502 1:15367463 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA -FHAD1--FHAD1 BS_8RHPJ740 4.0679780088534 4.0679780088534 NA NA differentially expressed differentially expressed NA NA 1:15369502 1:15367463 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA -FHAD1--FHAD1 BS_8ZP3CBQA 6.1577479776144 6.1577479776144 NA NA differentially expressed differentially expressed NA NA 1:15369502 1:15367463 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA -FHAD1--FHAD1 BS_AGS1HHGF 5.28504532633616 5.28504532633616 NA NA differentially expressed differentially expressed NA NA 1:15369502 1:15367463 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA -FHAD1--FHAD1 BS_BJDNWMJH 4.35567743726816 4.35567743726816 NA NA differentially expressed differentially expressed NA NA 1:15369502 1:15367463 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA -FHAD1--FHAD1 BS_FAVRBEW7 7.41624353546705 7.41624353546705 NA NA differentially expressed differentially expressed NA NA 1:15369502 1:15367463 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA -FHAD1--FHAD1 BS_H0QWRJE2 3.64353285421049 3.64353285421049 NA NA differentially expressed differentially expressed NA NA 1:15397449 1:15380701 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA -FHAD1--FHAD1 BS_QSTAVWGE 6.01138639174025 6.01138639174025 NA NA differentially expressed differentially expressed NA NA 1:15369502 1:15367463 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA -FHAD1--FHAD1 BS_RHD7XPNP 8.58373241105719 8.58373241105719 NA NA differentially expressed differentially expressed NA NA 1:15369502 1:15367463 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA -FHAD1--FHAD1 BS_SXCZ3CXN 5.3594313227247 5.3594313227247 NA NA differentially expressed differentially expressed NA NA 1:15369502 1:15367463 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA -FHAD1--FHAD1 BS_WFD0GE5X 6.89543272592452 6.89543272592452 NA NA differentially expressed differentially expressed NA NA 1:15369502 1:15367463 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA -FHAD1(1380)/AL031283.1(1316)--FHAD1 BS_7BTZQKYY 8.94024771591085 8.94024771591085 NA NA differentially expressed differentially expressed NA NA 1:15401663 1:15380701 ARRIBA other 3 2 low [],duplication FHAD1 AL031283.1 FHAD1 NA NA NA NA NA NA -FHL2(107436)/NCK2(198948)--COBLL1 BS_81SP2HX4 1.96281313356049 -0.951059287635253 1.65663845931379 NA no change no change no change NA 2:105545949 2:164743875 ARRIBA other 1 1 high [],inversion FHL2 NCK2 COBLL1 NA Oncogene NA NA NA NA -FIP1L1--SCFD2 BS_B1C6GZ84 6.53743689612752 11.5398634636459 NA NA differentially expressed differentially expressed NA NA 4:53379264 4:53081285 ARRIBA frameshift 22 4 medium [INTRACHROMOSOMAL[chr4:0.01Mb],LOCAL_INVERSION:+:-:[11568]],duplication/5'-5' FIP1L1 NA SCFD2 NA CosmicCensus, Oncogene NA NA NA NA -FIS1--FIS1(4418)/RNU6-1104P(13204) BS_775HDFNY -0.58319599817517 -0.58319599817517 NA NA no change no change NA NA 7:101251895 7:101256734 ARRIBA frameshift 13 0 high [],duplication FIS1 NA FIS1 RNU6-1104P NA NA NA NA NA -FKBP4--ERC1 BS_SD8YBRBR 2.85580851665461 5.39227058392096 NA NA differentially expressed differentially expressed NA NA 12:2797871 12:1408149 ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr12:1.30Mb]],duplication FKBP4 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA -FKBP4--ERC1 BS_SD8YBRBR 2.85580851665461 5.39227058392096 NA NA differentially expressed differentially expressed NA NA 12:2795244 12:1408149 ARRIBA in-frame 11 0 medium [INTRACHROMOSOMAL[chr12:1.30Mb]],duplication FKBP4 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA -FKBP4--ERC1 BS_SD8YBRBR 2.85580851665461 5.39227058392096 NA NA differentially expressed differentially expressed NA NA 12:2797282 12:1408149 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr12:1.30Mb]],duplication FKBP4 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA -FKBP4--ERC1 BS_SD8YBRBR 2.85580851665461 5.39227058392096 NA NA differentially expressed differentially expressed NA NA 12:2796964 12:1408149 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:1.30Mb]],duplication FKBP4 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA -FKBP9--AC004869.1(72631)/HMGN1P19(80405) BS_70FFPA51 3.1054673467839 NA NA -0.0294627825494395 differentially expressed NA NA no change 7:32980553 7:46554209 ARRIBA frameshift 2 0 medium [],deletion FKBP9 NA AC004869.1 HMGN1P19 CosmicCensus NA NA NA NA -FLJ31104(7153)/AC008892.1(48248)--POU6F1 BS_8ZD6J47V 0.578138860493795 -0.568144928206792 NA NA no change no change NA NA 5:56010802 12:51189748 ARRIBA other 3 1 medium [],translocation FLJ31104 AC008892.1 POU6F1 NA NA TranscriptionFactor NA NA NA -FLJ31104(7153)/AC008892.1(48248)--POU6F1 BS_M8EA6R2A 1.66930007554801 -0.31645575327477 NA NA no change no change NA NA 5:56010802 12:51189748 ARRIBA other 6 1 medium [],translocation FLJ31104 AC008892.1 POU6F1 NA NA TranscriptionFactor NA NA NA -FLNC--AC000124.1(30470)/GCC1(64344) BS_MKM0EEN1 4.51402991781339 -0.192728900018739 NA 0.193648574030686 differentially expressed no change NA no change 7:128840936 7:127516274 ARRIBA frameshift 6 0 medium [],duplication FLNC NA AC000124.1 GCC1 NA NA NA NA NA -FMC1--AC005377.1(9781)/PPP1R2P6(51) BS_7C40TRCY NA NA NA 26.1582134995875 NA NA NA differentially expressed 7:139341522 7:140292701 ARRIBA frameshift 2 0 medium [],deletion FMC1 NA AC005377.1 PPP1R2P6 NA NA NA NA NA -FMC1--PPP1R2P6 BS_7C40TRCY NA 26.1582134995875 NA NA NA differentially expressed NA NA 7:139341522 7:140292701 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr7:0.95Mb]],deletion FMC1 NA PPP1R2P6 NA NA NA NA NA NA -FMN2--CHRM3 BS_GTZCFGRZ 1.24327673710055 3.120801825126 NA NA no change differentially expressed NA NA 1:240123345 1:239827252 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr1:0.10Mb],LOCAL_REARRANGEMENT:+:[98896]],duplication FMN2 NA CHRM3 NA NA NA NA NA NA -FMN2--CHRM3 BS_GTZCFGRZ 1.24327673710055 3.120801825126 NA NA no change differentially expressed NA NA 1:240123345 1:239907433 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.10Mb],LOCAL_REARRANGEMENT:+:[98896]],duplication FMN2 NA CHRM3 NA NA NA NA NA NA -FMN2--FMN2 BS_1EBQ3T20 -0.519810907446933 -0.519810907446933 NA NA no change no change NA NA 1:240211235 1:240123179 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing FMN2 NA FMN2 NA NA NA NA NA NA -FMN2--FMN2 BS_996ZS2A4 0.00320049114681151 0.00320049114681151 NA NA no change no change NA NA 1:240438210 1:240257945 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing FMN2 NA FMN2 NA NA NA NA NA NA -FMN2--FMN2 BS_BKR4E30C -1.06723697205502 -1.06723697205502 NA NA no change no change NA NA 1:240355908 1:240206799 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing FMN2 NA FMN2 NA NA NA NA NA NA -FMN2--FMN2 BS_QPPPGYP4 -0.73420458771786 -0.73420458771786 NA NA no change no change NA NA 1:240211235 1:240177921 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing FMN2 NA FMN2 NA NA NA NA NA NA -FMO5--AC245407.2(16447)/AC245407.1(36165) BS_NJ4WPQVK 0.858760383384578 NA NA NA no change NA NA NA 1:147224895 1:146478306 ARRIBA frameshift 2 0 medium [],inversion FMO5 NA AC245407.2 AC245407.1 NA NA NA NA NA -FN1--FASTKD2 BS_6JHXXVR7 7.2244460780863 3.13371216273153 NA NA differentially expressed differentially expressed NA NA 2:215404389 2:206766644 ARRIBA in-frame 20 7 medium [INTRACHROMOSOMAL[chr2:8.57Mb]],inversion FN1 NA FASTKD2 NA Oncogene NA NA NA NA -FN1--MDH1B BS_6JHXXVR7 7.2244460780863 -1.50377766085916 NA NA differentially expressed no change NA NA 2:215404389 2:206744181 ARRIBA frameshift 16 4 medium [INTRACHROMOSOMAL[chr2:8.59Mb]],inversion/5'-5' FN1 NA MDH1B NA Oncogene NA NA NA NA -FNBP4--ASRGL1 BS_MT15SGJN -1.55030169535296 -3.51279612222008 NA NA no change differentially expressed NA NA 11:47765270 11:62356325 ARRIBA in-frame 7 0 high [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA -FNBP4--ASRGL1 BS_MT15SGJN -1.55030169535296 -3.51279612222008 NA NA no change differentially expressed NA NA 11:47765270 11:62337967 ARRIBA in-frame 4 0 high [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA -FNBP4--ASRGL1 BS_MT15SGJN -1.55030169535296 -3.51279612222008 NA NA no change differentially expressed NA NA 11:47765270 11:62356987 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA -FNBP4--ASRGL1 BS_NB42PWZN 0.920556107585079 -1.26418780333495 NA NA no change no change NA NA 11:47765270 11:62356987 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA -FNBP4--ASRGL1 BS_NB42PWZN 0.920556107585079 -1.26418780333495 NA NA no change no change NA NA 11:47765270 11:62356325 ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA -FNBP4--ASRGL1 BS_NB42PWZN 0.920556107585079 -1.26418780333495 NA NA no change no change NA NA 11:47765270 11:62337967 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA -FNBP4--ASRGL1 BS_Z7890YNR 0.319863715247864 -1.7622822731829 NA NA no change no change NA NA 11:47765270 11:62337967 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA -FNBP4--ASRGL1 BS_Z7890YNR 0.319863715247864 -1.7622822731829 NA NA no change no change NA NA 11:47765270 11:62356987 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA -FNBP4--ASRGL1 BS_Z7890YNR 0.319863715247864 -1.7622822731829 NA NA no change no change NA NA 11:47765270 11:62356325 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA -FNDC3A--PACRG BS_S5P8VTN5 2.0257925105367 1.68953163357536 NA NA differentially expressed no change NA NA 13:48976177 6:163314827 ARRIBA other 20 0 high [INTERCHROMOSOMAL[chr13--chr6]],translocation FNDC3A NA PACRG NA NA TumorSuppressorGene NA NA NA -FNDC3A--PACRG BS_S5P8VTN5 2.0257925105367 1.68953163357536 NA NA differentially expressed no change NA NA 13:48976917 6:163314827 ARRIBA other 13 1 high [INTERCHROMOSOMAL[chr13--chr6]],translocation FNDC3A NA PACRG NA NA TumorSuppressorGene NA NA NA -FNDC3B--ATAD2B BS_1D6PZNKN 9.1559344777002 0.418506150060063 NA NA differentially expressed no change NA NA 3:172133546 2:23808316 ARRIBA frameshift 14 1 high [INTERCHROMOSOMAL[chr3--chr2]],translocation/5'-5' FNDC3B NA ATAD2B NA NA NA NA NA NA -FNDC3B--EEF1A1P8 BS_FAQQ0GCQ 7.0758242879017 12.9767065590157 NA NA differentially expressed differentially expressed NA NA 3:172307501 3:184044456 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr3:11.62Mb]],inversion FNDC3B NA EEF1A1P8 NA NA NA NA NA NA -FNDC3B--RSRC1 BS_1D6PZNKN 9.1559344777002 0.422819582512974 NA NA differentially expressed no change NA NA 3:172251541 3:158203072 ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr3:13.49Mb]],duplication FNDC3B NA RSRC1 NA NA NA NA NA NA -FNDC3B--RSRC1 BS_1D6PZNKN 9.1559344777002 0.422819582512974 NA NA differentially expressed no change NA NA 3:172247776 3:158203072 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr3:13.49Mb]],duplication FNDC3B NA RSRC1 NA NA NA NA NA NA -FOCAD--AC074281.1(9416)/FAM9B(32311) BS_49FQXT2E -0.244970134080859 NA NA -0.511106843804633 no change NA NA no change 9:20720534 X:8991921 ARRIBA frameshift 5 1 high [],translocation FOCAD NA AC074281.1 FAM9B NA NA NA NA NA -FOCAD--MLLT3 BS_1HFK0SXV 1.3952552924289 2.57461221616495 NA NA no change differentially expressed NA NA 9:20658826 9:20456786 ARRIBA other 1 0 low [CCLE,INTRACHROMOSOMAL[chr9:0.04Mb],LOCAL_INVERSION:+:-:[35766]],inversion FOCAD NA MLLT3 NA NA CosmicCensus, Oncogene NA NA NA -FOCAD--NFIB BS_B3M5SGPA -0.696274590358608 3.19677770454228 NA NA no change differentially expressed NA NA 9:20922001 9:14307520 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr9:6.26Mb]],deletion/3'-3' FOCAD NA NFIB NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -FOPNL--FOPNL(16036)/AC130651.1(27036) BS_6JHXXVR7 1.46132235777252 1.46132235777252 NA NA no change no change NA NA 16:15884008 16:15904661 ARRIBA frameshift 7 1 high [],duplication FOPNL NA FOPNL AC130651.1 NA NA NA NA NA -FOS--ANKH BS_9XWJ88Q1 1.68842694380057 5.20305884039585 NA NA no change differentially expressed NA NA 14:75281004 5:14715400 ARRIBA frameshift 152 14 high [INTERCHROMOSOMAL[chr14--chr5]],translocation/5'-5' FOS NA ANKH NA Oncogene, TranscriptionFactor NA NA NA NA -FOS--ERRFI1 BS_R4Y180DM 1.53564182812438 -1.24077640886212 NA NA no change no change NA NA 14:75281014 1:8007662 ARRIBA frameshift 108 0 medium [INTERCHROMOSOMAL[chr14--chr1]],translocation FOS NA ERRFI1 NA Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene NA NA NA -FOS--LINC01258 BS_06XH7EVF 1.79122937023758 0.388264711279293 NA NA no change no change NA NA 14:75281146 4:38471747 ARRIBA frameshift 110 0 medium [INTERCHROMOSOMAL[chr14--chr4]],translocation/5'-5' FOS NA LINC01258 NA Oncogene, TranscriptionFactor NA NA NA NA -FOXJ3--NFYC BS_TRKH2SPE 1.11925421571295 0.831503028483757 NA NA no change no change NA NA 1:42227883 1:40738836 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:1.40Mb]],inversion FOXJ3 NA NFYC NA TranscriptionFactor TranscriptionFactor NA NA NA -FOXN3--EFCAB11 BS_8ZS9F31R 4.53842008798213 1.66738115973406 NA NA differentially expressed no change NA NA 14:89180701 14:89932627 ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr14:0.18Mb]],duplication FOXN3 NA EFCAB11 NA TranscriptionFactor NA NA NA NA -FOXN3--EFCAB11 BS_8ZS9F31R 4.53842008798213 1.66738115973406 NA NA differentially expressed no change NA NA 14:89486569 14:89932627 ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr14:0.18Mb]],duplication FOXN3 NA EFCAB11 NA TranscriptionFactor NA NA NA NA -FOXP1--AP2M1 BS_Y3G1X98S 6.65239633173383 0.33529866538672 NA NA differentially expressed no change NA NA 3:71299820 3:184176951 ARRIBA other 54 4 high [INTRACHROMOSOMAL[chr3:112.59Mb]],inversion FOXP1 NA AP2M1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -FOXP1--CNTN3(236419)/NIPA2P2(326596) BS_K17VQECG 1.94281375792023 -0.488811222278476 NA -0.0963368371749954 no change no change NA no change 3:71112536 3:74757559 ARRIBA frameshift 3 0 medium [],duplication FOXP1 NA CNTN3 NIPA2P2 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -FOXP1--LINC02006 BS_FAQQ0GCQ 2.35969584014441 NA NA NA differentially expressed NA NA NA 3:71493426 3:153386016 ARRIBA other 2 2 high [INTRACHROMOSOMAL[chr3:81.80Mb]],duplication FOXP1 NA LINC02006 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -FOXP2--AC016831.1 BS_6JHXXVR7 7.66327984615303 NA NA NA differentially expressed NA NA NA 7:114534846 7:130881014 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr7:16.18Mb]],deletion/5'-5' FOXP2 NA AC016831.1 NA TranscriptionFactor NA NA NA NA -FOXP2--FOXP2 BS_7BTZQKYY 5.56308207039609 5.56308207039609 NA NA differentially expressed differentially expressed NA NA 7:114570881 7:114162944 ARRIBA frameshift 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.61Mb]],duplication/non-canonical_splicing FOXP2 NA FOXP2 NA TranscriptionFactor TranscriptionFactor NA NA NA -FOXP2--GPR22 BS_6JHXXVR7 7.66327984615303 -1.58984077641626 NA NA differentially expressed no change NA NA 7:114534706 7:107474626 ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr7:6.61Mb]],inversion/3'-3' FOXP2 NA GPR22 NA TranscriptionFactor NA NA NA NA -FOXP2--ST7(10894)/AC006326.1(21921) BS_4QW2S1Q8 0.415406457548382 0.258298366538482 NA NA no change no change NA NA 7:114426679 7:117240997 ARRIBA frameshift 8 0 high [],deletion FOXP2 NA ST7 AC006326.1 TranscriptionFactor TumorSuppressorGene NA NA NA -FOXRED2--LAMP5-AS1 BS_VNWKNRY4 2.76742281915054 0.372824483248626 NA NA differentially expressed no change NA NA 22:36501241 20:9506938 ARRIBA frameshift 39 0 high [INTERCHROMOSOMAL[chr22--chr20]],translocation/5'-5' FOXRED2 NA LAMP5-AS1 NA NA NA NA NA NA -FP236383.1--ZNF704 BS_M15PW2N0 NA 6.85623172670392 NA NA NA differentially expressed NA NA 21:8400391 8:80873859 ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr21--chr8]],translocation FP236383.1 NA ZNF704 NA NA TranscriptionFactor NA NA NA -FPGT-TNNI3K--FPGT-TNNI3K BS_044XZ8ST 1.58824580806708 1.58824580806708 NA NA no change no change NA NA 1:74492266 1:74439490 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA -FPGT-TNNI3K--FPGT-TNNI3K BS_3MS8WVNR 1.25752542985356 1.25752542985356 NA NA no change no change NA NA 1:74492266 1:74439490 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA -FPGT-TNNI3K--FPGT-TNNI3K BS_92VDQ0NE 2.5421519900179 2.5421519900179 NA NA differentially expressed differentially expressed NA NA 1:74492266 1:74439490 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA -FPGT-TNNI3K--FPGT-TNNI3K BS_C7N3J4NW 2.4189411713657 2.4189411713657 NA NA differentially expressed differentially expressed NA NA 1:74492266 1:74439490 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA -FPGT-TNNI3K--FPGT-TNNI3K BS_CW9QV8AG 2.55712981812646 2.55712981812646 NA NA differentially expressed differentially expressed NA NA 1:74492266 1:74439490 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA -FPGT-TNNI3K--FPGT-TNNI3K BS_HCP5C912 1.67513469680017 1.67513469680017 NA NA no change no change NA NA 1:74492266 1:74439490 ARRIBA frameshift 5 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA -FPGT-TNNI3K--FPGT-TNNI3K BS_KPT2WPHW 1.50581868215835 1.50581868215835 NA NA no change no change NA NA 1:74492266 1:74439490 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA -FPGT-TNNI3K--FPGT-TNNI3K BS_M1PVEHCM 0.681211701133986 0.681211701133986 NA NA no change no change NA NA 1:74492266 1:74439490 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA -FPGT-TNNI3K--FPGT-TNNI3K BS_TDEFAPNH 2.26136009221594 2.26136009221594 NA NA differentially expressed differentially expressed NA NA 1:74492266 1:74439490 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA -FPGT-TNNI3K--FPGT-TNNI3K BS_TG93XC55 1.38879024481945 1.38879024481945 NA NA no change no change NA NA 1:74492266 1:74439490 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA -FPGT-TNNI3K--FPGT-TNNI3K BS_Y7F9E2E9 2.2103375188701 2.2103375188701 NA NA differentially expressed differentially expressed NA NA 1:74492266 1:74439490 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA -FPGT-TNNI3K--FPGT-TNNI3K BS_ZR96A4FH 2.22176734373427 2.22176734373427 NA NA differentially expressed differentially expressed NA NA 1:74492266 1:74439490 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA -FPGT-TNNI3K--FPGT-TNNI3K BS_ZRM0W01M 1.23211692674217 1.23211692674217 NA NA no change no change NA NA 1:74492266 1:74439490 ARRIBA frameshift 2 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA -FREM1--FREM1 BS_EK5PCKY0 1.64385143216226 1.64385143216226 NA NA no change no change NA NA 9:14756374 9:14770806 ARRIBA frameshift 9 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.18Mb]],duplication/non-canonical_splicing FREM1 NA FREM1 NA NA NA NA NA NA -FREM1--FREM1 BS_G63HYD6N 1.35929279625511 1.35929279625511 NA NA no change no change NA NA 9:14756374 9:14846091 ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.18Mb]],duplication/non-canonical_splicing FREM1 NA FREM1 NA NA NA NA NA NA -FREM1--FREM1 BS_N8J1DP02 2.2174594036443 2.2174594036443 NA NA differentially expressed differentially expressed NA NA 9:14746353 9:14770806 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.18Mb]],duplication/non-canonical_splicing FREM1 NA FREM1 NA NA NA NA NA NA -FREM1--FREM1 BS_NGHK9RZP 0.625734487368562 0.625734487368562 NA NA no change no change NA NA 9:14756374 9:14770806 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.18Mb]],duplication/non-canonical_splicing FREM1 NA FREM1 NA NA NA NA NA NA -FRG1CP(18061)/FRG1DP(459665)--LRRC37A6P BS_JFEZA9KE NA 4.92225546901246 NA NA NA differentially expressed NA NA 20:28620725 10:27257950 ARRIBA other 2 0 medium [],translocation FRG1CP FRG1DP LRRC37A6P NA NA NA NA NA NA -FRK--FRK(15444)/NT5DC1(24647) BS_NT9NZYFD 2.25409245109802 2.25409245109802 NA 1.79186712677459 differentially expressed differentially expressed NA no change 6:115956452 6:116076202 ARRIBA frameshift 2 0 medium [],duplication FRK NA FRK NT5DC1 Kinase, TumorSuppressorGene, Kinase Kinase, TumorSuppressorGene, Kinase NA NA NA -FRMD8--ME3 BS_KBT7MQ6H 1.67483727948324 -1.30498613282838 NA NA no change no change NA NA 11:65400867 11:86559823 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:21.03Mb]],inversion FRMD8 NA ME3 NA Oncogene Oncogene NA NA NA -FRMD8--SHC3(1119)/CKS2(131312) BS_0XEG6SNV 5.36930430529933 0.40957201539466 NA -1.49531831622969 differentially expressed no change NA no change 11:65395631 9:89179886 ARRIBA other 29 1 medium [],translocation FRMD8 NA SHC3 CKS2 Oncogene NA NA Oncogene NA -FRMPD1--AL157937.1 BS_FYRDYBMZ -1.83584399946987 NA NA NA no change NA NA NA 9:37651094 9:22213769 ARRIBA other 71 2 high [INTRACHROMOSOMAL[chr9:15.44Mb]],inversion FRMPD1 NA AL157937.1 NA NA NA NA NA NA -FRMPD1--AL157937.1(24242)/DMRTA1(207927) BS_FYRDYBMZ -1.83584399946987 NA NA 0.99407500186647 no change NA NA no change 9:37651094 9:22238914 ARRIBA other 14 0 medium [],inversion FRMPD1 NA AL157937.1 DMRTA1 NA NA NA TranscriptionFactor NA -FRMPD1--AL157937.1(615)/DMRTA1(231554) BS_FYRDYBMZ -1.83584399946987 NA NA 0.99407500186647 no change NA NA no change 9:37651094 9:22215287 ARRIBA other 3 0 medium [],inversion FRMPD1 NA AL157937.1 DMRTA1 NA NA NA TranscriptionFactor NA -FRMPD3--EEF1A1P40(472)/RBM41(31128) BS_R6WNEEE4 3.55027128079971 74.6684432234721 NA 4.08982681342204 differentially expressed differentially expressed NA differentially expressed X:107565066 X:107033292 ARRIBA frameshift 10 0 high [],duplication FRMPD3 NA EEF1A1P40 RBM41 NA NA NA NA NA -FRMPD3--MORC4(10424)/EEF1A1P40(21580) BS_R6WNEEE4 3.55027128079971 3.94568372686054 NA 74.6684432234721 differentially expressed differentially expressed NA differentially expressed X:107565066 X:107010668 ARRIBA frameshift 4 0 medium [],duplication FRMPD3 NA MORC4 EEF1A1P40 NA NA NA NA NA -FRS2--LINC02373 BS_6HTK4YJP 2.83942349577956 NA NA NA differentially expressed NA NA NA 12:69470530 12:69459517 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_REARRANGEMENT:+:[9625]],duplication FRS2 NA LINC02373 NA NA NA NA NA NA -FRY--EEF1DP3 BS_CHDGRYHJ 1.83514354693741 9.29687976621113 NA NA no change differentially expressed NA NA 13:32079033 13:31946009 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr13:0.08Mb],LOCAL_REARRANGEMENT:+:[77828]],duplication FRY NA EEF1DP3 NA NA NA NA NA NA -FRYL--FRYL BS_7G42J2SK 2.16682544951488 2.16682544951488 NA NA differentially expressed differentially expressed NA NA 4:48580865 4:48596000 ARRIBA in-frame 19 2 low [SELFIE,INTRACHROMOSOMAL[chr4:0.28Mb]],duplication/non-canonical_splicing FRYL NA FRYL NA Oncogene Oncogene NA NA NA -FRYL--TMEM165 BS_EMMF4PZX 1.83146813684746 1.00631034907892 NA NA no change no change NA NA 4:48710519 4:55452239 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:6.62Mb]],inversion FRYL NA TMEM165 NA Oncogene NA NA NA NA -FSD1L--FSD1L BS_7G42J2SK 4.07116772588746 4.07116772588746 NA NA differentially expressed differentially expressed NA NA 9:105472005 9:105464236 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.10Mb]],duplication/non-canonical_splicing FSD1L NA FSD1L NA NA NA NA NA NA -FSTL5--FSTL5 BS_53M8PP88 1.90135723217505 1.90135723217505 NA NA no change no change NA NA 4:161455004 4:161500134 ARRIBA frameshift 22 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FSTL5--FSTL5 BS_5PEFNDCY 0.706058801651612 0.706058801651612 NA NA no change no change NA NA 4:161759411 4:161776074 ARRIBA in-frame 27 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FSTL5--FSTL5 BS_6H1C1ME9 -0.158519131580543 -0.158519131580543 NA NA no change no change NA NA 4:161455004 4:161500134 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FSTL5--FSTL5 BS_74FS6GMW 2.32955969239029 2.32955969239029 NA NA differentially expressed differentially expressed NA NA 4:161455004 4:161500134 ARRIBA frameshift 39 3 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FSTL5--FSTL5 BS_FEPRNEXX 2.78479448289782 2.78479448289782 NA NA differentially expressed differentially expressed NA NA 4:161759411 4:161776074 ARRIBA in-frame 37 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FSTL5--FSTL5 BS_FRM9TG02 0.6227129677393 0.6227129677393 NA NA no change no change NA NA 4:161455004 4:161500134 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FSTL5--FSTL5 BS_H8A9PSYA 0.515188121299459 0.515188121299459 NA NA no change no change NA NA 4:161759411 4:161776074 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FSTL5--FSTL5 BS_HZ707C55 0.353191502481524 0.353191502481524 NA NA no change no change NA NA 4:161455004 4:161500134 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FSTL5--FSTL5 BS_J8VX4D17 0.205738403535579 0.205738403535579 NA NA no change no change NA NA 4:161455004 4:161500134 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FSTL5--FSTL5 BS_PZVHMSYN 0.50996268137155 0.50996268137155 NA NA no change no change NA NA 4:161455004 4:161500134 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FSTL5--FSTL5 BS_RHD7XPNP 2.23735783762387 2.23735783762387 NA NA differentially expressed differentially expressed NA NA 4:161455004 4:161500134 ARRIBA frameshift 39 3 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FSTL5--FSTL5 BS_TAHV8N04 0.371342248296541 0.371342248296541 NA NA no change no change NA NA 4:161455004 4:161500134 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FSTL5--FSTL5 BS_WFD0GE5X 1.89153088220372 1.89153088220372 NA NA no change no change NA NA 4:161455004 4:161500134 ARRIBA frameshift 27 3 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FSTL5--FSTL5 BS_X67GTEM6 1.04475227415767 1.04475227415767 NA NA no change no change NA NA 4:161455004 4:161500134 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FSTL5--FSTL5 BS_YB2RXRHT 0.022989534273658 0.022989534273658 NA NA no change no change NA NA 4:161455004 4:161510424 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FSTL5--FSTL5 BS_YE1MAQYJ 0.657322226482008 0.657322226482008 NA NA no change no change NA NA 4:161455004 4:161500134 ARRIBA frameshift 15 2 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FSTL5--FSTL5 BS_ZA9XT151 -0.0288357431573996 -0.0288357431573996 NA NA no change no change NA NA 4:161455004 4:161510424 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA -FTX--RNU6-974P(383518)/AL031313.1(112824) BS_NJ4WPQVK 7.02754226285143 NA NA NA differentially expressed NA NA NA X:74278898 X:82384845 ARRIBA other 3 0 medium [],duplication FTX NA RNU6-974P AL031313.1 NA NA NA NA NA -FUCA1--CNR2 BS_JGPR9SR2 5.06738455211724 204.49464071933 NA NA differentially expressed differentially expressed NA NA 1:23854360 1:23875662 ARRIBA frameshift 9 1 high [CCLE,INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:-:[2232]],duplication FUCA1 NA CNR2 NA NA Oncogene NA NA NA -FUCA2--FGFR1OP BS_V7BJM89K 0.84139510340879 -0.138793153379994 NA NA no change no change NA NA 6:143501932 6:167000089 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr6:23.49Mb]],duplication/5'-5' FUCA2 NA FGFR1OP NA NA CosmicCensus, Oncogene NA NA NA -FUT8(6947)/AL391261.1(128524)--FUT8 BS_2SFTWNVE 1.4841113180051 1.4841113180051 NA NA no change no change NA NA 14:65751068 14:65721775 ARRIBA other 5 0 medium [],duplication FUT8 AL391261.1 FUT8 NA Oncogene Oncogene NA NA NA -FUT8(6947)/AL391261.1(128524)--FUT8 BS_FEPRNEXX 3.65056867324783 3.65056867324783 NA NA differentially expressed differentially expressed NA NA 14:65751068 14:65721775 ARRIBA other 9 0 medium [],duplication FUT8 AL391261.1 FUT8 NA Oncogene Oncogene NA NA NA -FUT8(6947)/AL391261.1(128524)--FUT8 BS_N6NE6B3W 3.6776567012816 3.6776567012816 NA NA differentially expressed differentially expressed NA NA 14:65751068 14:65721775 ARRIBA other 28 1 high [],duplication FUT8 AL391261.1 FUT8 NA Oncogene Oncogene NA NA NA -FUT8(6947)/AL391261.1(128524)--FUT8 BS_ZRM0W01M 3.02718879728753 3.02718879728753 NA NA differentially expressed differentially expressed NA NA 14:65751068 14:65721775 ARRIBA other 6 0 medium [],duplication FUT8 AL391261.1 FUT8 NA Oncogene Oncogene NA NA NA -FXR1--FXR1 BS_NGHK9RZP 1.37865218858249 1.37865218858249 NA NA no change no change NA NA 3:180968254 3:180957819 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.11Mb]],duplication/non-canonical_splicing FXR1 NA FXR1 NA NA NA NA NA NA -FXR1--FXR1 BS_W80TJC27 1.26119040381979 1.26119040381979 NA NA no change no change NA NA 3:180968254 3:180957819 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.11Mb]],duplication/non-canonical_splicing FXR1 NA FXR1 NA NA NA NA NA NA -FXYD6--OR4D9 BS_3DCBDJAT -0.524795879899577 171.351602479546 NA NA no change differentially expressed NA NA 11:117858399 11:59511557 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr11:58.32Mb]],inversion FXYD6 NA OR4D9 NA NA NA NA NA NA -FXYD6--OR4D9 BS_3DCBDJAT -0.524795879899577 171.351602479546 NA NA no change differentially expressed NA NA 11:117876592 11:59514676 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:58.32Mb]],inversion FXYD6 NA OR4D9 NA NA NA NA NA NA -FXYD6--OR4D9(9086)/OR4D7P(1965) BS_3DCBDJAT -0.524795879899577 171.351602479546 NA 89.2014855354305 no change differentially expressed NA differentially expressed 11:117876592 11:59529789 ARRIBA other 2 0 medium [],inversion FXYD6 NA OR4D9 OR4D7P NA NA NA NA NA -FXYD6--OR4D9(9086)/OR4D7P(1965) BS_3DCBDJAT -0.524795879899577 171.351602479546 NA 89.2014855354305 no change differentially expressed NA differentially expressed 11:117876592 11:59529789 ARRIBA other 1 1 medium [],inversion FXYD6 NA OR4D9 OR4D7P NA NA NA NA NA -FYN--C6orf106 BS_3F4FQJMR -2.57360696378641 -0.862346178832611 NA NA differentially expressed no change NA NA 6:111780566 6:34654779 ARRIBA other 16 2 high [INTRACHROMOSOMAL[chr6:76.96Mb]],deletion FYN NA C6orf106 NA Kinase, Oncogene, Kinase NA NA NA NA -FYN--C6orf106 BS_HC44ZA0V -1.05303801401619 -0.523380368856086 NA NA no change no change NA NA 6:111780566 6:34654779 ARRIBA other 14 1 high [INTRACHROMOSOMAL[chr6:76.96Mb]],deletion FYN NA C6orf106 NA Kinase, Oncogene, Kinase NA NA NA NA -FYN--FYN BS_N6NE6B3W 1.17312438550703 1.17312438550703 NA NA no change no change NA NA 6:111694375 6:111720062 ARRIBA frameshift 24 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.21Mb]],duplication/non-canonical_splicing FYN NA FYN NA Kinase, Oncogene, Kinase Kinase, Oncogene, Kinase NA NA NA -FZD3--EBF2(29391)/RNA5SP258(62092) BS_1AYRM596 3.41499880240102 0.0370109730094912 NA NA differentially expressed no change NA NA 8:28555971 8:26074788 ARRIBA frameshift 10 0 high [],duplication FZD3 NA EBF2 RNA5SP258 NA TranscriptionFactor NA NA NA -FZD5(48024)/PLEKHM3(3701)--CMAS BS_49852ZBH 3.18181740637929 -1.41481062009645 3.63925358986609 NA differentially expressed no change differentially expressed NA 2:207817587 12:22046219 ARRIBA other 3 0 medium [],translocation FZD5 PLEKHM3 CMAS NA NA NA NA NA NA -G6PD--SMIM10L2B-AS1 BS_M0QYNVK8 0.0158531239506514 NA NA NA no change NA NA NA X:154535562 X:135065747 ARRIBA other 5 2 medium [INTRACHROMOSOMAL[chrX:19.41Mb]],inversion G6PD NA SMIM10L2B-AS1 NA NA NA NA NA NA -GAB1--SYK BS_EF775B3K 1.9799050973261 3.59323331301505 NA NA no change differentially expressed NA NA 4:143466225 9:90867131 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr4--chr9]],translocation GAB1 NA SYK NA Oncogene Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -GAB1--SYK BS_EF775B3K 1.9799050973261 3.59323331301505 NA NA no change differentially expressed NA NA 4:143466225 9:90874204 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr4--chr9]],translocation GAB1 NA SYK NA Oncogene Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -GAB2--CYB561A3 BS_23QW0BBA 1.36346871531179 -0.0129668352114572 NA NA no change no change NA NA 11:78417646 11:61356728 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr11:16.85Mb]],deletion GAB2 NA CYB561A3 NA Oncogene NA NA NA NA -GAB2--CYB561A3 BS_23QW0BBA 1.36346871531179 -0.0129668352114572 NA NA no change no change NA NA 11:78417646 11:61357828 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:16.85Mb]],deletion GAB2 NA CYB561A3 NA Oncogene NA NA NA NA -GAB2--RPS4XP13(19335)/SERPING1(972) BS_T1YHK6B7 1.36220073641988 17.1612281590514 NA 5.25085357313193 no change differentially expressed NA differentially expressed 11:78417646 11:57596415 ARRIBA frameshift 9 0 medium [],inversion GAB2 NA RPS4XP13 SERPING1 Oncogene NA NA NA NA -GAB2--SERPING1 BS_T1YHK6B7 1.36220073641988 5.25085357313193 NA NA no change differentially expressed NA NA 11:78417646 11:57598249 ARRIBA frameshift 29 6 high [INTRACHROMOSOMAL[chr11:20.60Mb]],inversion GAB2 NA SERPING1 NA Oncogene NA NA NA NA -GAB2--SERPING1 BS_T1YHK6B7 1.36220073641988 5.25085357313193 NA NA no change differentially expressed NA NA 11:78417646 11:57602035 ARRIBA frameshift 42 5 medium [INTRACHROMOSOMAL[chr11:20.60Mb]],inversion GAB2 NA SERPING1 NA Oncogene NA NA NA NA -GAB2--SERPING1 BS_T1YHK6B7 1.36220073641988 5.25085357313193 NA NA no change differentially expressed NA NA 11:78417646 11:57599879 ARRIBA in-frame 21 5 medium [INTRACHROMOSOMAL[chr11:20.60Mb]],inversion GAB2 NA SERPING1 NA Oncogene NA NA NA NA -GAB2--SERPING1 BS_T1YHK6B7 1.36220073641988 5.25085357313193 NA NA no change differentially expressed NA NA 11:78364016 11:57602035 ARRIBA in-frame 7 6 medium [INTRACHROMOSOMAL[chr11:20.60Mb]],inversion GAB2 NA SERPING1 NA Oncogene NA NA NA NA -GAB2--SERPING1 BS_T1YHK6B7 1.36220073641988 5.25085357313193 NA NA no change differentially expressed NA NA 11:78364016 11:57599879 ARRIBA other 1 6 medium [INTRACHROMOSOMAL[chr11:20.60Mb]],inversion GAB2 NA SERPING1 NA Oncogene NA NA NA NA -GAB2--SERPING1 BS_T1YHK6B7 1.36220073641988 5.25085357313193 NA NA no change differentially expressed NA NA 11:78417646 11:57611717 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr11:20.60Mb]],inversion GAB2 NA SERPING1 NA Oncogene NA NA NA NA -GABBR2--GABBR2 BS_2XD3MNKD -0.423342566154748 -0.423342566154748 NA NA no change no change NA NA 9:98385640 9:98406141 ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.42Mb]],duplication/non-canonical_splicing GABBR2 NA GABBR2 NA NA NA NA NA NA -GABBR2--GABBR2 BS_398KYV92 0.800682550208233 0.800682550208233 NA NA no change no change NA NA 9:98385640 9:98406141 ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.42Mb]],duplication/non-canonical_splicing GABBR2 NA GABBR2 NA NA NA NA NA NA -GABBR2--GABBR2 BS_39CGACC7 -0.0164470820869547 -0.0164470820869547 NA NA no change no change NA NA 9:98385640 9:98406141 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.42Mb]],duplication/non-canonical_splicing GABBR2 NA GABBR2 NA NA NA NA NA NA -GABBR2--GABBR2 BS_HCP5C912 0.806841438390887 0.806841438390887 NA NA no change no change NA NA 9:98385640 9:98406141 ARRIBA in-frame 10 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.42Mb]],duplication/non-canonical_splicing GABBR2 NA GABBR2 NA NA NA NA NA NA -GABBR2--GABBR2 BS_W18SF91A -1.32833999034465 -1.32833999034465 NA NA no change no change NA NA 9:98385640 9:98406141 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.42Mb]],duplication/non-canonical_splicing GABBR2 NA GABBR2 NA NA NA NA NA NA -GABRA2--GABRA2 BS_39CGACC7 0.255851156303962 0.255851156303962 NA NA no change no change NA NA 4:46303460 4:46332682 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing GABRA2 NA GABRA2 NA NA NA NA NA NA -GABRA2--GABRA2 BS_8MA5B8Y9 0.852830607278077 0.852830607278077 NA NA no change no change NA NA 4:46303460 4:46332682 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing GABRA2 NA GABRA2 NA NA NA NA NA NA -GABRA2--GABRA2 BS_ZRM0W01M 1.1958948385859 1.1958948385859 NA NA no change no change NA NA 4:46303460 4:46332682 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing GABRA2 NA GABRA2 NA NA NA NA NA NA -GABRA3--GABRA3 BS_2XD3MNKD -0.627853488001316 -0.627853488001316 NA NA no change no change NA NA X:152189730 X:152208144 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.29Mb]],duplication/non-canonical_splicing GABRA3 NA GABRA3 NA NA NA NA NA NA -GABRA3--GABRA3 BS_HCP5C912 1.01300371428953 1.01300371428953 NA NA no change no change NA NA X:152189730 X:152208144 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.29Mb]],duplication/non-canonical_splicing GABRA3 NA GABRA3 NA NA NA NA NA NA -GABRA3--GABRA3 BS_WSQMAA33 3.50224411702987 3.50224411702987 NA NA differentially expressed differentially expressed NA NA X:152345581 X:152364596 ARRIBA in-frame 30 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.29Mb]],duplication/non-canonical_splicing GABRA3 NA GABRA3 NA NA NA NA NA NA -GABRA3--GABRA3 BS_ZR96A4FH 0.98920454397368 0.98920454397368 NA NA no change no change NA NA X:152189730 X:152208144 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.29Mb]],duplication/non-canonical_splicing GABRA3 NA GABRA3 NA NA NA NA NA NA -GABRA3--GABRA3(6904)/KRT8P8(21315) BS_742RHK1M 3.55292314357459 3.55292314357459 NA 55.6945149178501 differentially expressed differentially expressed NA differentially expressed X:152345581 X:152458262 ARRIBA frameshift 6 0 medium [],duplication GABRA3 NA GABRA3 KRT8P8 NA NA NA NA NA -GABRA3--GABRA3(6904)/KRT8P8(21315) BS_KVNGNETA 0.789856864791446 0.789856864791446 NA -0.10957218038183 no change no change NA no change X:152345581 X:152458262 ARRIBA frameshift 2 0 medium [],duplication GABRA3 NA GABRA3 KRT8P8 NA NA NA NA NA -GABRA3--GABRA3(6904)/KRT8P8(21315) BS_VA5T4KAA 0.98920454397368 0.98920454397368 NA 2.13975518854348 no change no change NA differentially expressed X:152284668 X:152458262 ARRIBA frameshift 2 0 medium [],duplication GABRA3 NA GABRA3 KRT8P8 NA NA NA NA NA -GABRA3--GABRA3(6904)/KRT8P8(21315) BS_WSQMAA33 3.50224411702987 3.50224411702987 NA 19.3713730873038 differentially expressed differentially expressed NA differentially expressed X:152345581 X:152458262 ARRIBA frameshift 22 0 medium [],duplication GABRA3 NA GABRA3 KRT8P8 NA NA NA NA NA -GABRB1--GABRB1 BS_YB2RXRHT 3.5894222514016 3.5894222514016 NA NA differentially expressed differentially expressed NA NA 4:47406926 4:47403318 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.43Mb]],duplication/non-canonical_splicing GABRB1 NA GABRB1 NA NA NA NA NA NA -GABRG2--GABRG2 BS_09Z7TC35 2.37198704836295 2.37198704836295 NA NA differentially expressed differentially expressed NA NA 5:162104026 5:162093828 ARRIBA frameshift 14 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_1BWP5MCT 2.10079088813622 2.10079088813622 NA NA differentially expressed differentially expressed NA NA 5:162104026 5:162093828 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_398KYV92 0.295520070585825 0.295520070585825 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_470DYRJQ 0.299759264133567 0.299759264133567 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_52426AMF -0.232095702105401 -0.232095702105401 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_5PJCHF6V 0.922817039712975 0.922817039712975 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_7FWZ518S 1.24915433455045 1.24915433455045 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_7N0B2CY1 0.982073756856989 0.982073756856989 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_92VDQ0NE 0.215682231538681 0.215682231538681 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_9M5XJ10G 1.99491542632967 1.99491542632967 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 10 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_9NJHQE9F 1.96280373191666 1.96280373191666 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 14 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_CW9QV8AG 0.354306101462634 0.354306101462634 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_EFE4YEK3 1.63319849707638 1.63319849707638 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_FEPRNEXX 1.07734799518853 1.07734799518853 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_GCQFGDTX 1.47210449443931 1.47210449443931 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_HCP5C912 0.0540620966692713 0.0540620966692713 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_HHPA8NJ2 1.70521704033514 1.70521704033514 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_KVNGNETA 1.86116778899893 1.86116778899893 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 12 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_M86ECPHK 1.05842700818668 1.05842700818668 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 4 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_NKRYMHEP 0.968125090713425 0.968125090713425 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_QEYPFYHD 0.358851078991311 0.358851078991311 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_QV51J756 0.0697002434618988 0.0697002434618988 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_QWNBZ9RJ -0.268281852696957 -0.268281852696957 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_VVFBW0YH 1.47227404852829 1.47227404852829 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_W9AT0MR7 1.61609499301707 1.61609499301707 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 5 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_ZR96A4FH -0.0599461682477487 -0.0599461682477487 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_ZRM0W01M 1.06187212821527 1.06187212821527 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GABRG2--GABRG2 BS_ZV68CES9 1.95127511059142 1.95127511059142 NA NA no change no change NA NA 5:162104026 5:162093828 ARRIBA frameshift 14 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA -GALK2--AC114781.4(10396)/HELQ(18871) BS_X23724NJ 2.23347599080902 NA NA 3.18701820729563 differentially expressed NA NA differentially expressed 15:49239367 4:83388472 ARRIBA frameshift 9 0 high [],translocation GALK2 NA AC114781.4 HELQ Kinase NA NA NA NA -GALNT14--GALNT14 BS_CREQ97QC 0.85797528475676 0.85797528475676 NA NA no change no change NA NA 2:31114743 2:31132712 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.24Mb]],duplication/non-canonical_splicing GALNT14 NA GALNT14 NA NA NA NA NA NA -GALNT14--GALNT14 BS_HCP5C912 0.439426172835705 0.439426172835705 NA NA no change no change NA NA 2:31114743 2:31132712 ARRIBA frameshift 9 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.24Mb]],duplication/non-canonical_splicing GALNT14 NA GALNT14 NA NA NA NA NA NA -GALNT2--SYN3 BS_70FFPA51 3.29239605567532 -2.10281333981823 NA NA differentially expressed differentially expressed NA NA 1:230219823 22:32995328 ARRIBA other 5 1 medium [INTERCHROMOSOMAL[chr1--chr22]],translocation/5'-5' GALNT2 NA SYN3 NA NA NA NA NA NA -GALNT8--KCNT1 BS_A0DYVX9J 2.51993443956028 -0.676943530905045 NA NA differentially expressed no change NA NA 12:4814783 9:135765031 ARRIBA other 12 2 high [INTERCHROMOSOMAL[chr12--chr9]],translocation GALNT8 NA KCNT1 NA NA NA NA NA NA -GALNT8--KCNT1 BS_A0DYVX9J 2.51993443956028 -0.676943530905045 NA NA differentially expressed no change NA NA 12:4814778 9:135765031 ARRIBA other 8 2 high [INTERCHROMOSOMAL[chr12--chr9]],translocation GALNT8 NA KCNT1 NA NA NA NA NA NA -GALNT8--KCNT1 BS_A0DYVX9J 2.51993443956028 -0.676943530905045 NA NA differentially expressed no change NA NA 12:4765546 9:135765031 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr12--chr9]],translocation GALNT8 NA KCNT1 NA NA NA NA NA NA -GALNT9--GALNT9 BS_39CGACC7 -0.525886939681069 -0.525886939681069 NA NA no change no change NA NA 12:132247910 12:132262625 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing GALNT9 NA GALNT9 NA NA NA NA NA NA -GALNT9--GALNT9 BS_470DYRJQ 0.147875902889895 0.147875902889895 NA NA no change no change NA NA 12:132247910 12:132262625 ARRIBA frameshift 4 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing GALNT9 NA GALNT9 NA NA NA NA NA NA -GALNT9--GALNT9 BS_52426AMF -0.211447997516602 -0.211447997516602 NA NA no change no change NA NA 12:132247910 12:132262625 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing GALNT9 NA GALNT9 NA NA NA NA NA NA -GALNT9--GALNT9 BS_7FWZ518S 0.088417992015265 0.088417992015265 NA NA no change no change NA NA 12:132247910 12:132262625 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing GALNT9 NA GALNT9 NA NA NA NA NA NA -GALNT9--GALNT9 BS_N6NE6B3W 0.936524132083067 0.936524132083067 NA NA no change no change NA NA 12:132247910 12:132262625 ARRIBA frameshift 20 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing GALNT9 NA GALNT9 NA NA NA NA NA NA -GALNTL6--GALNTL6 BS_5K3R0F5D 1.79181893769165 1.79181893769165 NA NA no change no change NA NA 4:172348689 4:172229656 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.23Mb]],duplication/non-canonical_splicing GALNTL6 NA GALNTL6 NA NA NA NA NA NA -GALNTL6--GALNTL6 BS_V3Z3DB4N 0.209060971305136 0.209060971305136 NA NA no change no change NA NA 4:172348689 4:172229656 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.23Mb]],duplication/non-canonical_splicing GALNTL6 NA GALNTL6 NA NA NA NA NA NA -GALNTL6--GALNTL6(13368)/AC105285.1(77001) BS_GYXSDZ56 -1.35315078024876 -1.35315078024876 NA NA no change no change NA NA 4:172931500 4:173054927 ARRIBA other 1 1 medium [],duplication GALNTL6 NA GALNTL6 AC105285.1 NA NA NA NA NA -GALNTL6--GALNTL6(31491)/AC105285.1(58878) BS_DGTPWJ59 -1.39257064739974 -1.39257064739974 NA NA no change no change NA NA 4:173039860 4:173073050 ARRIBA other 5 2 medium [],duplication GALNTL6 NA GALNTL6 AC105285.1 NA NA NA NA NA -GAPDHS--NOA1 BS_6VPKXXMR 0.358178896912413 1.49795684534413 NA NA no change no change NA NA 19:35543480 4:56973230 ARRIBA frameshift 4 1 medium [INTERCHROMOSOMAL[chr19--chr4]],translocation GAPDHS NA NOA1 NA NA NA NA NA NA -GARNL3--GARNL3 BS_TDEFAPNH -0.435106029696523 -0.435106029696523 NA NA no change no change NA NA 9:127325095 9:127291168 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.17Mb]],duplication/non-canonical_splicing GARNL3 NA GARNL3 NA NA NA NA NA NA -GARNL3--LURAP1L BS_BKQZ550R -1.50543475456743 -0.929104673254732 NA NA no change no change NA NA 9:127345477 9:12821386 ARRIBA in-frame 2 0 high [INTRACHROMOSOMAL[chr9:114.40Mb]],duplication GARNL3 NA LURAP1L NA NA NA NA NA NA -GAS2--RB1CC1 BS_5CTVXVRX 9.19127993595809 0.441428473687406 NA NA differentially expressed no change NA NA 11:22755953 8:52686967 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr11--chr8]],translocation GAS2 NA RB1CC1 NA NA TumorSuppressorGene, Oncogene NA NA NA -GAS2--RB1CC1 BS_8ZS9F31R 8.54583403787482 0.967003107816341 NA NA differentially expressed no change NA NA 11:22755953 8:52686967 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr11--chr8]],translocation GAS2 NA RB1CC1 NA NA TumorSuppressorGene, Oncogene NA NA NA -GAS2--RB1CC1(85155)/NPBWR1(107433) BS_8ZS9F31R 8.54583403787482 0.967003107816341 NA -0.50891864205558 differentially expressed no change NA no change 11:22755953 8:52830998 ARRIBA frameshift 3 0 medium [],translocation GAS2 NA RB1CC1 NPBWR1 NA TumorSuppressorGene, Oncogene NA NA NA -GAS2--RB1CC1(87259)/NPBWR1(105329) BS_5CTVXVRX 9.19127993595809 0.441428473687406 NA -0.50891864205558 differentially expressed no change NA no change 11:22756750 8:52833102 ARRIBA other 8 1 medium [],translocation GAS2 NA RB1CC1 NPBWR1 NA TumorSuppressorGene, Oncogene NA NA NA -GAS2L1P2--VN1R51P(618)/FAM220CP(26403) BS_7BTZQKYY 1.42512950446287 0.884099335747832 NA -0.892914860251322 no change no change NA no change 9:97079287 9:97095256 ARRIBA other 5 0 medium [],duplication GAS2L1P2 NA VN1R51P FAM220CP NA NA NA NA NA -GAS2L1P2--VN1R51P(618)/FAM220CP(26403) BS_W4HGV6E7 0.934493228157768 0.538715317079473 NA -1.00757872684835 no change no change NA no change 9:97079287 9:97095256 ARRIBA other 5 2 high [],duplication GAS2L1P2 NA VN1R51P FAM220CP NA NA NA NA NA -GAS2L1P2--VN1R51P(618)/FAM220CP(26403) BS_YE1MAQYJ 3.35663877048959 2.58410391992669 NA -0.455502063081683 differentially expressed differentially expressed NA no change 9:97079287 9:97095256 ARRIBA other 10 0 high [],duplication GAS2L1P2 NA VN1R51P FAM220CP NA NA NA NA NA -GATAD2B--UCK2 BS_KE56MMY0 2.67050390628297 2.03244777198569 NA NA differentially expressed differentially expressed NA NA 1:153922733 1:165871652 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr1:11.90Mb]],duplication/5'-5' GATAD2B NA UCK2 NA TranscriptionFactor NA NA NA NA -GATB--NIM1K BS_P277RYX5 -0.638946864229146 2.11349616566539 NA NA no change differentially expressed NA NA 4:151705246 5:43235810 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr4--chr5]],translocation GATB NA NIM1K NA NA Kinase NA NA NA -GATC--COX6A1 BS_HD4EJYE3 2.42087220841833 -0.818382108036028 NA NA differentially expressed no change NA NA 12:120446829 12:120438379 ARRIBA frameshift 70 1 high [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_REARRANGEMENT:+:[5696]],duplication GATC NA COX6A1 NA NA NA NA NA NA -GATD1--OR5M1 BS_G63HYD6N NA 1.80515391954792 NA NA NA no change NA NA 11:771333 11:56613519 ARRIBA in-frame 11 2 high [INTRACHROMOSOMAL[chr11:55.83Mb]],duplication GATD1 NA OR5M1 NA NA NA NA NA NA -GATD1--OR5M1 BS_G63HYD6N NA 1.80515391954792 NA NA NA no change NA NA 11:770993 11:56613519 ARRIBA frameshift 2 2 high [INTRACHROMOSOMAL[chr11:55.83Mb]],duplication GATD1 NA OR5M1 NA NA NA NA NA NA -GATD1--OR5M1 BS_G63HYD6N NA 1.80515391954792 NA NA NA no change NA NA 11:770314 11:56613519 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr11:55.83Mb]],duplication GATD1 NA OR5M1 NA NA NA NA NA NA -GBF1--GBF1 BS_7WNSZNE3 2.23954318588364 2.23954318588364 NA NA differentially expressed differentially expressed NA NA 10:102344182 10:102258929 ARRIBA frameshift 16 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr10:0.14Mb]],duplication/non-canonical_splicing GBF1 NA GBF1 NA NA NA NA NA NA -GBF1--GBF1 BS_EVCAC3NH 1.23687975797713 1.23687975797713 NA NA no change no change NA NA 10:102344182 10:102258929 ARRIBA frameshift 10 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr10:0.14Mb]],duplication/non-canonical_splicing GBF1 NA GBF1 NA NA NA NA NA NA -GCC1--AC004917.1 BS_6JHXXVR7 6.88487181760519 NA NA NA differentially expressed NA NA NA 7:127581733 7:106718767 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:20.81Mb]],inversion/5'-5' GCC1 NA AC004917.1 NA NA NA NA NA NA -GCC1--AC091885.2 BS_6JHXXVR7 6.88487181760519 NA NA NA differentially expressed NA NA NA 7:127583497 5:24596072 ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation/3'-3' GCC1 NA AC091885.2 NA NA NA NA NA NA -GCC1--CDH10 BS_6JHXXVR7 6.88487181760519 -2.71137582563851 NA NA differentially expressed differentially expressed NA NA 7:127583497 5:24596072 ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation GCC1 NA CDH10 NA NA CosmicCensus, Oncogene NA NA NA -GCN1--GPR182 BS_7327SDAQ NA 1.59473689114085 NA NA NA no change NA NA 12:120153213 12:56994486 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr12:63.13Mb]],inversion GCN1 NA GPR182 NA NA NA NA NA NA -GCNT1(9297)/AL161626.1(32569)--GCNT1 BS_N6NE6B3W 4.21126049851833 4.21126049851833 NA NA differentially expressed differentially expressed NA NA 9:76516713 9:76500916 ARRIBA other 1 2 low [],duplication GCNT1 AL161626.1 GCNT1 NA NA NA NA NA NA -GCOM1--LINC01579 BS_AZN38B7V 1.79010821769403 1.47125354814357 NA NA no change no change NA NA 15:57661533 15:93761127 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:36.00Mb]],inversion GCOM1 NA LINC01579 NA NA NA NA NA NA -GCOM1--LINC01579 BS_AZN38B7V 1.79010821769403 1.47125354814357 NA NA no change no change NA NA 15:57661533 15:93720965 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:36.00Mb]],inversion GCOM1 NA LINC01579 NA NA NA NA NA NA -GEMIN4--LINC02093(55602)/HS3ST3A1(133327) BS_M0QYNVK8 2.00614166538158 NA NA 1.08434485934237 differentially expressed NA NA no change 17:752133 17:13362362 ARRIBA frameshift 6 0 medium [],inversion GEMIN4 NA LINC02093 HS3ST3A1 NA NA NA NA NA -GEMIN4--LINC02093(96669)/HS3ST3A1(92260) BS_M0QYNVK8 2.00614166538158 NA NA 1.08434485934237 differentially expressed NA NA no change 17:752133 17:13403429 ARRIBA frameshift 2 0 medium [],inversion GEMIN4 NA LINC02093 HS3ST3A1 NA NA NA NA NA -GEMIN8(29663)/AC002524.1(184826)--GLRA2 BS_ZZWMD6FA 0.229259621180266 1.49038561172174 NA NA no change no change NA NA X:14059556 X:14529948 ARRIBA other 4 0 high [],deletion GEMIN8 AC002524.1 GLRA2 NA NA NA NA NA NA -GFOD1--COX7A1(8305)/AC002984.1(12232) BS_NJ4WPQVK 1.12152832517731 -3.18886077048021 NA NA no change differentially expressed NA NA 6:13486638 19:36161174 ARRIBA frameshift 5 0 high [],translocation GFOD1 NA COX7A1 AC002984.1 NA NA NA NA NA -GFOD1--NME4 BS_H1XPVS9A 0.445583237133406 0.961552597581918 NA NA no change no change NA NA 6:13411599 16:399681 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr6--chr16]],translocation GFOD1 NA NME4 NA NA NA NA NA NA -GFPT1--DPP10 BS_RRAEQZ97 2.04962137815905 0.748559083635649 NA NA differentially expressed no change NA NA 2:69387065 2:115499510 ARRIBA in-frame 4 0 high [INTRACHROMOSOMAL[chr2:45.06Mb]],inversion GFPT1 NA DPP10 NA NA NA NA NA NA -GGCX--RNGTT BS_JAEM78XS 2.37792560269356 -0.083073473240027 NA NA differentially expressed no change NA NA 2:85549722 6:88685954 ARRIBA other 5 1 medium [INTERCHROMOSOMAL[chr2--chr6]],translocation/5'-5' GGCX NA RNGTT NA NA NA NA NA NA -GID4--MARCH10 BS_C6ZZ3FY5 -0.711872887738783 1.3610091932927 NA NA no change no change NA NA 17:18039902 17:62760006 ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr17:44.63Mb]],inversion GID4 NA MARCH10 NA NA NA NA NA NA -GIGYF1--SND1(74711)/MIR129-1(40552) BS_WH8G4VFB 0.102158870803411 1.62580971732056 NA NA no change no change NA NA 7:100687697 7:128167320 ARRIBA frameshift 5 1 medium [],duplication GIGYF1 NA SND1 MIR129-1 NA CosmicCensus NA TumorSuppressorGene NA -GIGYF2--AC093843.1(55789)/AC011233.1(309089) BS_GSVCN2XC 4.12886439289417 -0.348516681075866 NA NA differentially expressed no change NA NA 2:232697392 2:220853682 ARRIBA other 8 0 medium [],inversion GIGYF2 NA AC093843.1 AC011233.1 NA NA NA NA NA -GINS3--GINS3 BS_DSS3S5XD 1.69052048468925 1.69052048468925 NA NA no change no change NA NA 16:58387434 16:58382569 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.11Mb]],duplication GINS3 NA GINS3 NA NA NA NA NA NA -GK5--ATR BS_Y8D1F5WW 0.912904235309182 -0.77152272865446 NA NA no change no change NA NA 3:142198802 3:142484366 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr3:0.22Mb]],inversion/5'-5' GK5 NA ATR NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -GLCCI1--AC007161.3 BS_CHDGRYHJ 4.00469640236803 NA NA NA differentially expressed NA NA NA 7:8060248 7:8003908 ARRIBA frameshift 7 3 medium [],duplication GLCCI1 NA AC007161.3 NA NA NA NA NA NA -GLCCI1--AC007161.3 BS_CHDGRYHJ 4.00469640236803 NA NA NA differentially expressed NA NA NA 7:8024814 7:8003908 ARRIBA in-frame 9 1 medium [],duplication GLCCI1 NA AC007161.3 NA NA NA NA NA NA -GLCCI1--AC007161.3 BS_CHDGRYHJ 4.00469640236803 NA NA NA differentially expressed NA NA NA 7:8071131 7:8003908 ARRIBA in-frame 6 3 medium [],duplication GLCCI1 NA AC007161.3 NA NA NA NA NA NA -GLCCI1--AC007161.3 BS_CHDGRYHJ 4.00469640236803 NA NA NA differentially expressed NA NA NA 7:8022569 7:8003908 ARRIBA frameshift 6 1 medium [],duplication GLCCI1 NA AC007161.3 NA NA NA NA NA NA -GLCCI1--AC007161.3 BS_CHDGRYHJ 4.00469640236803 NA NA NA differentially expressed NA NA NA 7:8004059 7:7801670 ARRIBA frameshift 1 1 medium [],duplication GLCCI1 NA AC007161.3 NA NA NA NA NA NA -GLG1--ECE1 BS_AZN38B7V 4.37986794629092 4.9730069796898 NA NA differentially expressed differentially expressed NA NA 16:74491001 1:21256140 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr16--chr1]],translocation GLG1 NA ECE1 NA NA NA NA NA NA -GLI2--RN7SKP93(375614)/MGAT5(147970) BS_RRAEQZ97 1.21976270463729 1.53111895728887 NA 1.43667132486029 no change no change NA no change 2:120736285 2:133972013 ARRIBA other 2 0 medium [],deletion GLI2 NA RN7SKP93 MGAT5 Oncogene, TranscriptionFactor NA NA NA NA -GLI3--RALA BS_VJ2S5DVS 6.18522094876595 2.01154228911604 NA NA differentially expressed differentially expressed NA NA 7:42223130 7:39659110 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:2.25Mb]],deletion/5'-5' GLI3 NA RALA NA Oncogene, TranscriptionFactor Oncogene NA NA NA -GLRA2--MSL3(209003)/Y_RNA(70068) BS_FCAKKZ20 0.69259784828038 -0.521936830156738 NA 10.3733340149599 no change no change NA differentially expressed X:14532372 X:11984756 ARRIBA frameshift 4 1 high [],inversion GLRA2 NA MSL3 Y_RNA NA NA NA NA NA -GLRA2--MSL3(254754)/Y_RNA(24317) BS_FCAKKZ20 0.69259784828038 -0.521936830156738 NA 10.3733340149599 no change no change NA differentially expressed X:14532372 X:12030507 ARRIBA frameshift 14 2 high [],inversion GLRA2 NA MSL3 Y_RNA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_0HW7W7SD -0.77477220567677 11.777293393493 4.12781722909421 NA no change differentially expressed differentially expressed NA X:14796160 X:14865580 ARRIBA other 4 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_1021ZGQT -1.27687778013163 11.6429994693686 4.74786573394185 NA no change differentially expressed differentially expressed NA X:14796160 X:14865580 ARRIBA other 2 2 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_1T19NFJ8 -0.403096698264524 10.1907968527424 2.28067192047128 NA no change differentially expressed differentially expressed NA X:14796160 X:14859334 ARRIBA other 6 0 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_2SFTWNVE 1.34888313437263 6.58395559540757 0.613703185962891 NA no change differentially expressed no change NA X:14796160 X:14865580 ARRIBA other 3 0 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_2XD3MNKD -0.966090356767886 9.56763511265849 2.17587893477172 NA no change differentially expressed differentially expressed NA X:14796160 X:14865580 ARRIBA other 2 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_4PH1MBGR 2.29597043479432 8.89007605373971 4.30797689739062 NA differentially expressed differentially expressed differentially expressed NA X:14796160 X:14865580 ARRIBA other 1 2 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_7FWZ518S 0.807510052485317 9.74260683318762 0.613703185962891 NA no change differentially expressed no change NA X:14796160 X:14865580 ARRIBA other 3 0 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_8ZD6J47V -0.631118969317058 8.14770650255207 1.96375417283276 NA no change differentially expressed no change NA X:14796160 X:14865580 ARRIBA other 5 0 medium [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_9NJHQE9F 0.228083892060035 12.4159932616692 3.85286400649036 NA no change differentially expressed differentially expressed NA X:14796160 X:14865580 ARRIBA other 7 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_FBJ5Q54N 1.87568326045489 14.6808647320766 7.8885591719092 NA no change differentially expressed differentially expressed NA X:14796160 X:14865580 ARRIBA other 2 0 low [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_FCAKKZ20 0.69259784828038 12.0247932875525 7.33180089762538 NA no change differentially expressed differentially expressed NA X:14796160 X:14869043 ARRIBA other 1 2 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_G00FHF3Q 1.12928806805665 7.88359700567741 1.3060446210977 NA no change differentially expressed no change NA X:14796160 X:14865580 ARRIBA other 3 0 medium [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_GCQFGDTX -0.591628500341771 7.45689836360851 3.18802822856017 NA no change differentially expressed differentially expressed NA X:14796160 X:14865580 ARRIBA other 4 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_HHPA8NJ2 0.353338697617178 10.4407738447045 1.96375417283276 NA no change differentially expressed no change NA X:14796160 X:14865580 ARRIBA other 3 0 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_K5802F84 -0.647245251643397 7.88359700567741 -0.242973097477618 NA no change differentially expressed no change NA X:14796160 X:14865580 ARRIBA other 3 0 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_M86ECPHK 0.793670994595776 5.33363615145497 2.38463649445934 NA no change differentially expressed differentially expressed NA X:14796160 X:14865580 ARRIBA other 2 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_ME3HKN2C 0.322113449598444 6.7269885840439 0.131026990444365 NA no change differentially expressed no change NA X:14796160 X:14865580 ARRIBA other 2 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_NKEAAFMW -0.261902580809932 7.48265782923831 3.28508734157501 NA no change differentially expressed differentially expressed NA X:14796160 X:14865580 ARRIBA other 3 0 medium [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_NKRYMHEP 1.01153328018977 10.8012715006393 3.28508734157501 NA no change differentially expressed differentially expressed NA X:14796160 X:14865580 ARRIBA other 5 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_NZ71XCG3 1.1614263115166 8.65041835833846 2.48778565163087 NA no change differentially expressed differentially expressed NA X:14796160 X:14865580 ARRIBA other 2 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_QEYPFYHD 1.49865161975478 8.07656275223682 0.964429307287594 NA no change differentially expressed no change NA X:14796160 X:14865580 ARRIBA other 3 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_RD4D5F9F -0.139671424860789 9.34828500160098 2.89247758573768 NA no change differentially expressed differentially expressed NA X:14796160 X:14865580 ARRIBA other 2 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_S1M423AB -1.08418841865726 10.6488167778652 2.89247758573768 NA no change differentially expressed differentially expressed NA X:14796160 X:14865580 ARRIBA other 8 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_W644VEVE -0.337077178127284 11.6730438850478 5.00490551433732 NA no change differentially expressed differentially expressed NA X:14796160 X:14865580 ARRIBA other 2 1 low [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_W9N9844Q -1.25122884311098 5.1967784820722 1.96375417283276 NA no change differentially expressed no change NA X:14796160 X:14865580 ARRIBA other 1 3 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_Y8D1F5WW 1.48872630346494 7.11401030786784 3.66631548690418 NA no change differentially expressed differentially expressed NA X:14796160 X:14865580 ARRIBA other 3 0 medium [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRA2(64348)/NPM1P9(38316)--FANCB BS_ZV68CES9 -0.545719673765271 7.30052116590694 0.253366943551931 NA no change differentially expressed no change NA X:14796160 X:14865580 ARRIBA other 3 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA -GLRX--RHOBTB3(5915)/AC008592.3(4126) BS_VNWKNRY4 -0.503074040338394 0.674371858638133 NA 1.3475853355487 no change no change NA no change 5:95822456 5:95830298 ARRIBA frameshift 5 1 high [],duplication GLRX NA RHOBTB3 AC008592.3 NA NA NA NA NA -GLT1D1--SVILP1 BS_QWTE1CWR -1.23412726212705 12.8362343713223 NA NA no change differentially expressed NA NA 12:128888744 10:30702093 ARRIBA frameshift 4 2 high [INTERCHROMOSOMAL[chr12--chr10]],translocation/5'-5' GLT1D1 NA SVILP1 NA NA NA NA NA NA -GLTP--C8orf33(16022) BS_4W68NV3M -1.52485056204866 -0.417679396894016 NA NA no change no change NA NA 12:109880272 8:145072052 ARRIBA frameshift 2 0 medium [],translocation GLTP NA C8orf33 NA NA NA NA NA NA -GNAI1--AC008163.1 BS_81SP2HX4 1.18885962214294 NA NA NA no change NA NA NA 7:80135278 7:81515772 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:1.27Mb]],inversion GNAI1 NA AC008163.1 NA NA NA NA NA NA -GNAI1--AC008163.1 BS_81SP2HX4 1.18885962214294 NA NA NA no change NA NA NA 7:80135278 7:81560265 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:1.27Mb]],inversion GNAI1 NA AC008163.1 NA NA NA NA NA NA -GNAQ--APBA1 BS_A0DYVX9J -0.412084422678318 -2.04151159402173 NA NA no change differentially expressed NA NA 9:78031100 9:69499384 ARRIBA frameshift 21 3 high [INTRACHROMOSOMAL[chr9:8.04Mb]],inversion/5'-5' GNAQ NA APBA1 NA CosmicCensus, Oncogene NA NA NA NA -GNAQ--APBA1 BS_A0DYVX9J -0.412084422678318 -2.04151159402173 NA NA no change differentially expressed NA NA 9:77942196 9:69497908 ARRIBA other 26 5 medium [INTRACHROMOSOMAL[chr9:8.04Mb]],deletion GNAQ NA APBA1 NA CosmicCensus, Oncogene NA NA NA NA -GNAQ--SETX BS_0XEG6SNV -0.831175939702553 0.999775745614224 NA NA no change no change NA NA 9:77922161 9:132336515 ARRIBA in-frame 4 0 high [INTRACHROMOSOMAL[chr9:54.23Mb]],duplication GNAQ NA SETX NA CosmicCensus, Oncogene NA NA NA NA -GNAQ--SETX BS_0XEG6SNV -0.831175939702553 0.999775745614224 NA NA no change no change NA NA 9:77922161 9:132331448 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:54.23Mb]],duplication GNAQ NA SETX NA CosmicCensus, Oncogene NA NA NA NA -GNAS--KCNG1(37748)/AL121785.1(37261) BS_6DCSD5Y6 0.278185355453925 2.30054077873269 NA NA no change differentially expressed NA NA 20:58910401 20:51060877 ARRIBA frameshift 11 1 medium [],inversion GNAS NA KCNG1 AL121785.1 CosmicCensus, Oncogene NA NA NA NA -GNAS--PMEPA1 BS_6DCSD5Y6 0.278185355453925 2.63654902726142 NA NA no change differentially expressed NA NA 20:58910425 20:57671893 ARRIBA frameshift 48 3 medium [INTRACHROMOSOMAL[chr20:1.13Mb]],inversion GNAS NA PMEPA1 NA CosmicCensus, Oncogene Oncogene NA NA NA -GNAS--TOX2 BS_6DCSD5Y6 0.278185355453925 1.26008673148482 NA NA no change no change NA NA 20:58910401 20:43981008 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr20:14.77Mb]],inversion/3'-3' GNAS NA TOX2 NA CosmicCensus, Oncogene NA NA NA NA -GNAZ--PISD BS_A0DYVX9J -0.837930307705573 -0.958629432118992 NA NA no change no change NA NA 22:23096418 22:31632947 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr22:8.49Mb]],deletion/5'-5' GNAZ NA PISD NA NA NA NA NA NA -GNAZ--SFI1 BS_A0DYVX9J -0.837930307705573 -1.04633302030447 NA NA no change no change NA NA 22:23096418 22:31616745 ARRIBA in-frame 10 3 high [INTRACHROMOSOMAL[chr22:8.36Mb]],deletion GNAZ NA SFI1 NA NA NA NA NA NA -GNAZ--SFI1 BS_A0DYVX9J -0.837930307705573 -1.04633302030447 NA NA no change no change NA NA 22:23096418 22:31617000 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr22:8.36Mb]],deletion GNAZ NA SFI1 NA NA NA NA NA NA -GNB1--WNK1 BS_QZFEB94Q -0.291668505135275 0.135793674491889 NA NA no change no change NA NA 1:1789053 12:907847 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr1--chr12]],translocation GNB1 NA WNK1 NA NA Kinase, Kinase NA NA NA -GNB1L--AC005381.1 BS_K17VQECG 1.26101304306786 NA NA NA no change NA NA NA 22:19854443 19:28466780 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr22--chr19]],translocation GNB1L NA AC005381.1 NA NA NA NA NA NA -GNB1L--AC005394.2 BS_K17VQECG 1.26101304306786 NA NA NA no change NA NA NA 22:19854443 19:28466780 ARRIBA other 5 0 medium [],translocation GNB1L NA AC005394.2 NA NA NA NA NA NA -GNB1L--NF2 BS_1HQ76V6D -0.307113258710402 0.096097503423532 NA NA no change no change NA NA 22:19802001 22:29664990 ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr22:9.75Mb]],inversion GNB1L NA NF2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -GNB2--PARP12 BS_WH8G4VFB -0.674102719671144 3.01652046648887 NA NA no change differentially expressed NA NA 7:100676799 7:140027406 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:39.34Mb]],inversion GNB2 NA PARP12 NA NA NA NA NA NA -GNB2--PARP12 BS_WH8G4VFB -0.674102719671144 3.01652046648887 NA NA no change differentially expressed NA NA 7:100676799 7:140026348 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:39.34Mb]],inversion GNB2 NA PARP12 NA NA NA NA NA NA -GNE--AC109635.5(17303)/AC109635.1(38810) BS_4B0BAVTX 1.17371313726869 NA NA NA no change NA NA NA 9:36246031 11:50207744 ARRIBA frameshift 8 0 high [],translocation GNE NA AC109635.5 AC109635.1 NA NA NA NA NA -GNPDA2--AC097535.1(283432)/AC016687.3(55038) BS_PNYN0AYD 0.409144449224566 NA NA NA no change NA NA NA 4:44704343 4:33721309 ARRIBA other 18 4 medium [],inversion GNPDA2 NA AC097535.1 AC016687.3 NA NA NA NA NA -GNPDA2--AC097535.1(283432)/AC016687.3(55038) BS_R5SNFB5B 0.0541301877585523 NA NA NA no change NA NA NA 4:44704343 4:33721309 ARRIBA other 6 0 medium [],inversion GNPDA2 NA AC097535.1 AC016687.3 NA NA NA NA NA -GNPTAB--MMP2 BS_ZV68CES9 -2.54020542309452 2.73520057788001 NA NA differentially expressed differentially expressed NA NA 12:101830559 16:55497333 ARRIBA frameshift 21 1 high [INTERCHROMOSOMAL[chr12--chr16]],translocation/5'-5' GNPTAB NA MMP2 NA NA Oncogene NA NA NA -GNPTAB--RNA5SP369(27359)/RNU6-1183P(7456) BS_M8WP5T16 2.32655966005506 NA NA NA differentially expressed NA NA NA 12:101770406 12:101864286 ARRIBA frameshift 1 1 low [],duplication GNPTAB NA RNA5SP369 RNU6-1183P NA NA NA NA NA -GNPTAB--SPTAN1 BS_RWJZFTP9 2.49245373430586 -0.0238685449508238 NA NA differentially expressed no change NA NA 12:101760028 9:128625769 ARRIBA frameshift 1 1 low [HGNC_GENEFAM,INTERCHROMOSOMAL[chr12--chr9]],translocation GNPTAB NA SPTAN1 NA NA Oncogene NA NA NA -GOLGA2P8--CPQ BS_MM20BVW9 0.0957655847780853 3.17545755199143 NA NA no change differentially expressed NA NA 15:90295226 8:97066009 ARRIBA other 38 1 high [INTERCHROMOSOMAL[chr15--chr8]],translocation GOLGA2P8 NA CPQ NA NA NA NA NA NA -GOLPH3L--LINC01611 BS_TK84K675 1.25592828978056 5.85272177696331 NA NA no change differentially expressed NA NA 1:150661814 6:84421242 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr1--chr6]],translocation GOLPH3L NA LINC01611 NA NA NA NA NA NA -GON4L--IQGAP3 BS_9NZ2D6AD 1.07065050053894 10.1717320500701 NA NA no change differentially expressed NA NA 1:155813634 1:156535247 ARRIBA frameshift 3 0 high [ChimerSeq,INTRACHROMOSOMAL[chr1:0.67Mb]],duplication GON4L NA IQGAP3 NA NA NA NA NA TCGAFusion -GOPC--FYN BS_ZXYDSBM9 0.362893850138177 3.46315914267084 NA NA no change differentially expressed NA NA 6:117566854 6:111816195 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr6:5.69Mb]],deletion GOPC NA FYN NA CosmicCensus, Oncogene Kinase, Oncogene, Kinase NA NA NA -GOPC--FYN BS_ZXYDSBM9 0.362893850138177 3.46315914267084 NA NA no change differentially expressed NA NA 6:117566854 6:111780635 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:5.69Mb]],deletion GOPC NA FYN NA CosmicCensus, Oncogene Kinase, Oncogene, Kinase NA NA NA -GOPC--ROS1 BS_4NF35AF6 -0.48585220429012 3.10174658749103 NA NA no change differentially expressed NA NA 6:117566854 6:117321394 ARRIBA in-frame 58 6 high [chimerdb_pubmed,ChimerKB,ChimerPub,Cosmic,Mitelman,INTRACHROMOSOMAL[chr6:0.13Mb]],deletion/read-through GOPC NA ROS1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA -GOPC--ROS1 BS_D3YBV7KB -1.95268141014346 1.24447769446565 NA NA no change no change NA NA 6:117566854 6:117321394 ARRIBA in-frame 19 0 high [chimerdb_pubmed,ChimerKB,ChimerPub,Cosmic,Mitelman,INTRACHROMOSOMAL[chr6:0.13Mb]],deletion/read-through GOPC NA ROS1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA -GOPC--ROS1 BS_F6V1Y4QS -2.06647730842001 3.77656253265184 NA NA differentially expressed differentially expressed NA NA 6:117566854 6:117321394 ARRIBA in-frame 61 0 high [chimerdb_pubmed,ChimerKB,ChimerPub,Cosmic,Mitelman,INTRACHROMOSOMAL[chr6:0.13Mb]],deletion/read-through GOPC NA ROS1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA -GOT2P2(17828)/AL022310.1(14122)--TNFSF4 BS_N8J1DP02 15.5517612565346 4.42511348197998 NA NA differentially expressed differentially expressed NA NA 1:173160178 1:173207185 ARRIBA other 3 0 medium [],duplication GOT2P2 AL022310.1 TNFSF4 NA NA NA NA NA NA -GPAT4--NRG1(86369)/RNU6-663P(57165) BS_PK18H7E7 NA -1.29443794695155 NA NA NA no change NA NA 8:41599304 8:32854328 ARRIBA frameshift 1 2 high [],duplication GPAT4 NA NRG1 RNU6-663P NA CosmicCensus NA NA NA -GPC5--MIR17HG(42490)/GPC5(1538) BS_7ZV3DPGT 0.892987972201013 21.6278561445881 NA 0.892987972201013 no change differentially expressed NA no change 13:91448922 13:91397069 ARRIBA frameshift 17 3 high [],duplication GPC5 NA MIR17HG GPC5 TumorSuppressorGene, CosmicCensus, Oncogene NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA -GPC5--MIR17HG(42490)/GPC5(1538) BS_M7QJ8VF0 1.62401513437384 27.8159238555117 NA 1.62401513437384 no change differentially expressed NA no change 13:91448922 13:91397069 ARRIBA frameshift 5 0 low [],duplication GPC5 NA MIR17HG GPC5 TumorSuppressorGene, CosmicCensus, Oncogene NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA -GPHN--FAM19A5 BS_ZVZDDW2G -0.949991372143894 -3.75328159911884 NA NA no change differentially expressed NA NA 14:67143449 22:48749839 ARRIBA in-frame 11 3 high [INTERCHROMOSOMAL[chr14--chr22]],translocation GPHN NA FAM19A5 NA CosmicCensus, Oncogene NA NA NA NA -GPLD1--ALDH5A1(6782)/KIAA0319(115) BS_CXVJK2FY 0.726618713028014 -0.853033489961687 NA 2.91240299684234 no change no change NA differentially expressed 6:24445546 6:24543989 ARRIBA frameshift 1 0 low [],duplication GPLD1 NA ALDH5A1 KIAA0319 NA NA NA NA NA -GPM6A--AC107214.2(115196)/RWDD4(6912) BS_P0QF87WC -1.42917675367277 NA NA 1.13665525292613 no change NA NA no change 4:175812191 4:183632723 ARRIBA frameshift 6 0 medium [],inversion GPM6A NA AC107214.2 RWDD4 NA NA NA NA NA -GPM6A--AC107214.2(115196)/RWDD4(6912) BS_WAXJY4XQ -0.0756289611638536 NA NA 1.90300083332552 no change NA NA no change 4:175812191 4:183632723 ARRIBA frameshift 4 0 medium [],inversion GPM6A NA AC107214.2 RWDD4 NA NA NA NA NA -GPM6A--AC107214.2(115196)/RWDD4(6912) BS_WJ9H4NZZ 0.152855881136225 NA NA 2.60302112114679 no change NA NA differentially expressed 4:175812191 4:183632723 ARRIBA frameshift 6 0 medium [],inversion GPM6A NA AC107214.2 RWDD4 NA NA NA NA NA -GPM6B--CNKSR2 BS_QXKRN6CR 0.335395504359577 -1.35372967422091 NA NA no change no change NA NA X:13790408 X:21602256 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chrX:7.44Mb]],duplication/5'-5' GPM6B NA CNKSR2 NA NA NA NA NA NA -GPM6B--EPC1 BS_M0QYNVK8 1.58004212798347 0.873548331603075 NA NA no change no change NA NA X:13938507 10:32305931 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chrX--chr10]],translocation GPM6B NA EPC1 NA NA NA NA NA NA -GPM6B--GEMIN8 BS_49FQXT2E 0.715247994355026 0.338163191501238 NA NA no change no change NA NA X:13938507 X:14009169 ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chrX:0.07Mb],LOCAL_REARRANGEMENT:-:[69641]],duplication GPM6B NA GEMIN8 NA NA NA NA NA NA -GPM6B--SRPX BS_FCAKKZ20 -1.42433973386035 -0.203533440851777 NA NA no change no change NA NA X:13938507 X:38172057 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chrX:24.21Mb]],duplication GPM6B NA SRPX NA NA TumorSuppressorGene NA NA NA -GPM6B--SRPX BS_FCAKKZ20 -1.42433973386035 -0.203533440851777 NA NA no change no change NA NA X:13938507 X:38164895 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chrX:24.21Mb]],duplication GPM6B NA SRPX NA NA TumorSuppressorGene NA NA NA -GPR135--CCDC175 BS_0Y66ZBWE 3.67794856045163 1.63214925094819 NA NA differentially expressed no change NA NA 14:59458857 14:59540746 ARRIBA other 2 0 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_0Y66ZBWE 3.67794856045163 1.63214925094819 NA NA differentially expressed no change NA NA 14:59458857 14:59565275 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_0Y66ZBWE 3.67794856045163 1.63214925094819 NA NA differentially expressed no change NA NA 14:59458857 14:59551436 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_0Y66ZBWE 3.67794856045163 1.63214925094819 NA NA differentially expressed no change NA NA 14:59458857 14:59511803 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_13CGKADW 2.50154880180952 1.21859896095368 NA NA differentially expressed no change NA NA 14:59456438 14:59551436 ARRIBA other 2 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_13CGKADW 2.50154880180952 1.21859896095368 NA NA differentially expressed no change NA NA 14:59456438 14:59543454 ARRIBA other 2 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_13CGKADW 2.50154880180952 1.21859896095368 NA NA differentially expressed no change NA NA 14:59458857 14:59551436 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_13CGKADW 2.50154880180952 1.21859896095368 NA NA differentially expressed no change NA NA 14:59458857 14:59540746 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_2SFTWNVE 3.36789267315518 2.02560462202704 NA NA differentially expressed differentially expressed NA NA 14:59456438 14:59551436 ARRIBA other 3 3 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_2SFTWNVE 3.36789267315518 2.02560462202704 NA NA differentially expressed differentially expressed NA NA 14:59456438 14:59568380 ARRIBA other 1 4 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_2SFTWNVE 3.36789267315518 2.02560462202704 NA NA differentially expressed differentially expressed NA NA 14:59456438 14:59565275 ARRIBA other 1 4 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_2SFTWNVE 3.36789267315518 2.02560462202704 NA NA differentially expressed differentially expressed NA NA 14:59458857 14:59565275 ARRIBA other 1 2 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_2SFTWNVE 3.36789267315518 2.02560462202704 NA NA differentially expressed differentially expressed NA NA 14:59458857 14:59551436 ARRIBA other 1 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_2SFTWNVE 3.36789267315518 2.02560462202704 NA NA differentially expressed differentially expressed NA NA 14:59456438 14:59540746 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_470DYRJQ 1.42792256857293 0.784727241970018 NA NA no change no change NA NA 14:59456438 14:59551436 ARRIBA other 1 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_470DYRJQ 1.42792256857293 0.784727241970018 NA NA no change no change NA NA 14:59456438 14:59538840 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_4W68NV3M 4.94217399670175 1.25061323988431 NA NA differentially expressed no change NA NA 14:59458857 14:59551436 ARRIBA other 1 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_61E80SD6 3.58198759137129 1.82532154930798 NA NA differentially expressed no change NA NA 14:59456438 14:59565275 ARRIBA other 2 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_61E80SD6 3.58198759137129 1.82532154930798 NA NA differentially expressed no change NA NA 14:59456438 14:59543454 ARRIBA other 2 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_61E80SD6 3.58198759137129 1.82532154930798 NA NA differentially expressed no change NA NA 14:59456438 14:59540746 ARRIBA other 1 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_61E80SD6 3.58198759137129 1.82532154930798 NA NA differentially expressed no change NA NA 14:59458857 14:59551436 ARRIBA other 2 0 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_7FWZ518S 2.33804156903453 1.91791575719433 NA NA differentially expressed no change NA NA 14:59456438 14:59565275 ARRIBA other 4 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_7FWZ518S 2.33804156903453 1.91791575719433 NA NA differentially expressed no change NA NA 14:59456438 14:59551436 ARRIBA other 4 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_7FWZ518S 2.33804156903453 1.91791575719433 NA NA differentially expressed no change NA NA 14:59458857 14:59551436 ARRIBA other 1 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_7FWZ518S 2.33804156903453 1.91791575719433 NA NA differentially expressed no change NA NA 14:59456438 14:59543454 ARRIBA other 1 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_9M5XJ10G 2.49266546656061 0.784727241970018 NA NA differentially expressed no change NA NA 14:59456438 14:59551436 ARRIBA other 3 1 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_9M5XJ10G 2.49266546656061 0.784727241970018 NA NA differentially expressed no change NA NA 14:59458857 14:59565275 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_9M5XJ10G 2.49266546656061 0.784727241970018 NA NA differentially expressed no change NA NA 14:59458857 14:59551436 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_9NJHQE9F 2.22456809788879 0.82907336432545 NA NA differentially expressed no change NA NA 14:59456438 14:59551436 ARRIBA other 2 1 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_9NJHQE9F 2.22456809788879 0.82907336432545 NA NA differentially expressed no change NA NA 14:59458857 14:59540746 ARRIBA other 3 0 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_9NJHQE9F 2.22456809788879 0.82907336432545 NA NA differentially expressed no change NA NA 14:59458857 14:59521676 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_A14Z8BBK 3.38166983252423 1.89295119372507 NA NA differentially expressed no change NA NA 14:59456438 14:59551436 ARRIBA other 3 0 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_A14Z8BBK 3.38166983252423 1.89295119372507 NA NA differentially expressed no change NA NA 14:59456438 14:59543454 ARRIBA other 2 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_A14Z8BBK 3.38166983252423 1.89295119372507 NA NA differentially expressed no change NA NA 14:59458857 14:59551436 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_A14Z8BBK 3.38166983252423 1.89295119372507 NA NA differentially expressed no change NA NA 14:59456438 14:59540746 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_A14Z8BBK 3.38166983252423 1.89295119372507 NA NA differentially expressed no change NA NA 14:59456438 14:59538840 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_ERWT0ZWE 2.97346096104228 0.272687403419887 NA NA differentially expressed no change NA NA 14:59456438 14:59568380 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_ERWT0ZWE 2.97346096104228 0.272687403419887 NA NA differentially expressed no change NA NA 14:59458857 14:59565275 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_ERWT0ZWE 2.97346096104228 0.272687403419887 NA NA differentially expressed no change NA NA 14:59458857 14:59551436 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_ERWT0ZWE 2.97346096104228 0.272687403419887 NA NA differentially expressed no change NA NA 14:59458857 14:59538840 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_ME3HKN2C 2.49266546656061 1.74536770941869 NA NA differentially expressed no change NA NA 14:59456438 14:59551436 ARRIBA other 2 0 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_ME3HKN2C 2.49266546656061 1.74536770941869 NA NA differentially expressed no change NA NA 14:59458857 14:59565275 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_ME3HKN2C 2.49266546656061 1.74536770941869 NA NA differentially expressed no change NA NA 14:59456438 14:59543454 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_N6NE6B3W 2.62357270871391 2.21155687327795 NA NA differentially expressed differentially expressed NA NA 14:59456438 14:59551436 ARRIBA other 9 0 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_N6NE6B3W 2.62357270871391 2.21155687327795 NA NA differentially expressed differentially expressed NA NA 14:59458857 14:59551436 ARRIBA other 4 0 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_N6NE6B3W 2.62357270871391 2.21155687327795 NA NA differentially expressed differentially expressed NA NA 14:59458857 14:59565275 ARRIBA other 2 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_N6NE6B3W 2.62357270871391 2.21155687327795 NA NA differentially expressed differentially expressed NA NA 14:59455684 14:59543454 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_N6NE6B3W 2.62357270871391 2.21155687327795 NA NA differentially expressed differentially expressed NA NA 14:59456438 14:59540746 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_N6NE6B3W 2.62357270871391 2.21155687327795 NA NA differentially expressed differentially expressed NA NA 14:59458857 14:59511803 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_QEYPFYHD 3.58198759137129 1.83751222856 NA NA differentially expressed no change NA NA 14:59458857 14:59551436 ARRIBA other 3 0 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_QEYPFYHD 3.58198759137129 1.83751222856 NA NA differentially expressed no change NA NA 14:59456438 14:59543454 ARRIBA other 3 0 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_QEYPFYHD 3.58198759137129 1.83751222856 NA NA differentially expressed no change NA NA 14:59458857 14:59540746 ARRIBA other 2 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_RGSMX7QD 1.1506720071518 -0.157001144113606 NA NA no change no change NA NA 14:59456438 14:59543454 ARRIBA other 2 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_S1M423AB 4.16549939836606 0.901184700557091 NA NA differentially expressed no change NA NA 14:59456438 14:59565275 ARRIBA other 1 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_S1M423AB 4.16549939836606 0.901184700557091 NA NA differentially expressed no change NA NA 14:59458857 14:59565275 ARRIBA other 1 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_S1M423AB 4.16549939836606 0.901184700557091 NA NA differentially expressed no change NA NA 14:59456438 14:59543454 ARRIBA other 1 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_S1M423AB 4.16549939836606 0.901184700557091 NA NA differentially expressed no change NA NA 14:59458857 14:59540746 ARRIBA other 1 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_SFKZSJN1 2.98119035696907 1.31540413171516 NA NA differentially expressed no change NA NA 14:59456438 14:59551436 ARRIBA other 2 1 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_SFKZSJN1 2.98119035696907 1.31540413171516 NA NA differentially expressed no change NA NA 14:59458857 14:59565275 ARRIBA other 1 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_SFKZSJN1 2.98119035696907 1.31540413171516 NA NA differentially expressed no change NA NA 14:59456438 14:59540746 ARRIBA other 1 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_SFKZSJN1 2.98119035696907 1.31540413171516 NA NA differentially expressed no change NA NA 14:59458857 14:59540746 ARRIBA other 1 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_SFKZSJN1 2.98119035696907 1.31540413171516 NA NA differentially expressed no change NA NA 14:59458857 14:59525434 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_SFKZSJN1 2.98119035696907 1.31540413171516 NA NA differentially expressed no change NA NA 14:59458857 14:59521676 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_ZRM0W01M 2.70816453771074 2.06189781999142 NA NA differentially expressed differentially expressed NA NA 14:59456438 14:59551436 ARRIBA other 3 1 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_ZRM0W01M 2.70816453771074 2.06189781999142 NA NA differentially expressed differentially expressed NA NA 14:59456438 14:59565275 ARRIBA other 1 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_ZRM0W01M 2.70816453771074 2.06189781999142 NA NA differentially expressed differentially expressed NA NA 14:59455684 14:59551436 ARRIBA other 1 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_ZRM0W01M 2.70816453771074 2.06189781999142 NA NA differentially expressed differentially expressed NA NA 14:59458857 14:59565275 ARRIBA other 2 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR135--CCDC175 BS_ZRM0W01M 2.70816453771074 2.06189781999142 NA NA differentially expressed differentially expressed NA NA 14:59458857 14:59551436 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA -GPR137B--MTR BS_DRD9QXR5 0.528596905851764 0.882821549967226 NA NA no change no change NA NA 1:236205250 1:236880755 ARRIBA in-frame 6 4 high [INTRACHROMOSOMAL[chr1:0.57Mb]],deletion GPR137B NA MTR NA NA NA NA NA NA -GPR137B--MTR BS_DRD9QXR5 0.528596905851764 0.882821549967226 NA NA no change no change NA NA 1:236183906 1:236880755 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.57Mb]],deletion GPR137B NA MTR NA NA NA NA NA NA -GPR158--GPR158 BS_KVNGNETA -0.638323915838046 -0.638323915838046 NA NA no change no change NA NA 10:25594397 10:25466651 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.43Mb]],duplication/non-canonical_splicing GPR158 NA GPR158 NA NA NA NA NA NA -GPR176--TAF1 BS_6VPKXXMR -0.648810270889008 2.1986991504319 NA NA no change differentially expressed NA NA 15:39919855 X:71454170 ARRIBA in-frame 4 1 high [INTERCHROMOSOMAL[chr15--chrX]],translocation GPR176 NA TAF1 NA NA Kinase NA NA NA -GPRC5B(143494)/GPR139(1824)--GPR139 BS_7327SDAQ 0.07448492516154 10.9790677672513 10.9790677672513 NA no change differentially expressed differentially expressed NA 16:20029661 16:20032669 ARRIBA other 4 0 medium [],duplication GPRC5B GPR139 GPR139 NA NA NA NA NA NA -GPSM2--ACBD6 BS_1EBQ3T20 0.0541975218635216 0.859821897146084 NA NA no change no change NA NA 1:108904254 1:180326271 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:71.34Mb]],deletion/5'-5' GPSM2 NA ACBD6 NA NA NA NA NA NA -GPSM2--ACBD6 BS_8ZD6J47V -1.45855520407494 1.0357823076617 NA NA no change no change NA NA 1:108904254 1:180422391 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:71.34Mb]],deletion/5'-5' GPSM2 NA ACBD6 NA NA NA NA NA NA -GRAMD1B--SLC36A4 BS_W311713R 2.13904766135933 1.71491260747294 NA NA differentially expressed no change NA NA 11:123606798 11:93185814 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:30.16Mb]],inversion GRAMD1B NA SLC36A4 NA NA NA NA NA NA -GRAMD1C--GRAMD1C BS_49FQXT2E 0.168915474629796 0.168915474629796 NA NA no change no change NA NA 3:113904272 3:113901031 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.12Mb]],duplication/non-canonical_splicing GRAMD1C NA GRAMD1C NA NA NA NA NA NA -GRAMD4--AL133346.1 BS_MN5XVP5A 2.19532290137785 NA NA NA differentially expressed NA NA NA 22:46577290 6:132070941 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation/5'-5' GRAMD4 NA AL133346.1 NA NA NA NA NA NA -GRAMD4--ALDH8A1 BS_MN5XVP5A 2.19532290137785 0.697186368769568 NA NA differentially expressed no change NA NA 22:46577290 6:134933032 ARRIBA other 3 1 high [INTERCHROMOSOMAL[chr22--chr6]],translocation GRAMD4 NA ALDH8A1 NA NA NA NA NA NA -GRAMD4--MDGA2 BS_ZVZDDW2G 2.18374674617796 0.64342072589718 NA NA differentially expressed no change NA NA 22:46577290 14:47523865 ARRIBA other 21 2 high [INTERCHROMOSOMAL[chr22--chr14]],translocation/5'-5' GRAMD4 NA MDGA2 NA NA NA NA NA NA -GREB1--UPP2 BS_RRAEQZ97 -0.113582025926287 -0.448767561808363 NA NA no change no change NA NA 2:11556771 2:157995180 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr2:146.23Mb]],deletion GREB1 NA UPP2 NA NA NA NA NA NA -GRIA1--GRIA1 BS_0T17SY47 -0.0044188861123169 -0.0044188861123169 NA NA no change no change NA NA 5:153770415 5:153764434 ARRIBA in-frame 10 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.32Mb]],duplication/non-canonical_splicing GRIA1 NA GRIA1 NA NA NA NA NA NA -GRIA1--GRIA1 BS_BKR4E30C -0.762935429302506 -0.762935429302506 NA NA no change no change NA NA 5:153770415 5:153764434 ARRIBA in-frame 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.32Mb]],duplication/non-canonical_splicing GRIA1 NA GRIA1 NA NA NA NA NA NA -GRIA1--GRIA1 BS_HCP5C912 1.00098165794826 1.00098165794826 NA NA no change no change NA NA 5:153770415 5:153764434 ARRIBA in-frame 14 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.32Mb]],duplication/non-canonical_splicing GRIA1 NA GRIA1 NA NA NA NA NA NA -GRIA4--GRIA4 BS_34201DKZ 1.57886154069327 1.57886154069327 NA NA no change no change NA NA 11:105612434 11:105610908 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.37Mb]],duplication/non-canonical_splicing GRIA4 NA GRIA4 NA NA NA NA NA NA -GRID1--ASCC1 BS_4QW2S1Q8 0.753606295961801 1.40108770418459 NA NA no change no change NA NA 10:86138819 10:72216934 ARRIBA frameshift 10 0 high [INTRACHROMOSOMAL[chr10:13.38Mb]],deletion GRID1 NA ASCC1 NA NA NA NA NA NA -GRID1--ASCC1 BS_MX23ZY0Y 0.794956898912534 1.89484380158755 NA NA no change no change NA NA 10:86138819 10:72216934 ARRIBA frameshift 30 3 high [INTRACHROMOSOMAL[chr10:13.38Mb]],deletion GRID1 NA ASCC1 NA NA NA NA NA NA -GRID1--CCAR1 BS_4QW2S1Q8 0.753606295961801 0.0999823876854951 NA NA no change no change NA NA 10:86138819 10:68736876 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:16.81Mb]],inversion GRID1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA -GRID1--CCAR1 BS_4QW2S1Q8 0.753606295961801 0.0999823876854951 NA NA no change no change NA NA 10:86138819 10:68747161 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:16.81Mb]],inversion GRID1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA -GRID1--CCAR1 BS_4QW2S1Q8 0.753606295961801 0.0999823876854951 NA NA no change no change NA NA 10:86206364 10:68736876 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr10:16.81Mb]],inversion GRID1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA -GRID2--GRID2 BS_063ERW0R 3.8156094109101 3.8156094109101 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 13 2 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_13CGKADW 4.1917658109851 4.1917658109851 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 17 3 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_1NPD7PVG 2.25690117421934 2.25690117421934 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_2SFTWNVE 2.75759572553716 2.75759572553716 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 24 3 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_470DYRJQ 4.05682922986572 4.05682922986572 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 42 6 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_5PEFNDCY 3.72862507454439 3.72862507454439 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 27 5 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_7FWZ518S 3.38160247006063 3.38160247006063 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 25 1 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_90B22NGP 5.74562767991001 5.74562767991001 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 24 1 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_9DZ253JY 2.6434208406257 2.6434208406257 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_CGB2WS2A 3.89820103564366 3.89820103564366 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 15 2 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_FEPRNEXX 4.94241451849779 4.94241451849779 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 52 5 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_G9XE3N9T 3.93798398952129 3.93798398952129 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 17 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_GS1KR5PK 2.91072092338492 2.91072092338492 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 20 1 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_GYA4V1RD 3.48770022022288 3.48770022022288 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 18 3 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_HZ707C55 1.48971247384477 1.48971247384477 NA NA no change no change NA NA 4:93238490 4:93207404 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_J71N7D09 5.0899264230677 5.0899264230677 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 23 2 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_N1E0H8YQ 1.35677905046835 1.35677905046835 NA NA no change no change NA NA 4:93238490 4:93084995 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_N6NE6B3W 4.89997359365627 4.89997359365627 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 94 5 high [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_P39SQPTS 1.33060500950779 1.33060500950779 NA NA no change no change NA NA 4:93238490 4:93084995 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_QEYPFYHD 0.953070203051686 0.953070203051686 NA NA no change no change NA NA 4:93238490 4:93084995 ARRIBA frameshift 9 2 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_QTSXW7DA 3.22543896822466 3.22543896822466 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_QWNBZ9RJ 2.18894362836715 2.18894362836715 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_R7HZCZ8B 1.57268900063483 1.57268900063483 NA NA no change no change NA NA 4:93238490 4:93084995 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_RXN5T5YT 1.36253906578829 1.36253906578829 NA NA no change no change NA NA 4:93238490 4:93084995 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_S69QZAJR 3.22267494166892 3.22267494166892 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_SDA4RMMG 3.68750411602971 3.68750411602971 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 24 1 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_SFKZSJN1 3.75680681819129 3.75680681819129 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 24 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_TM9MH0RP 3.59396111809963 3.59396111809963 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_TRKH2SPE 2.65389865169615 2.65389865169615 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_VA5T4KAA 1.14779490281728 1.14779490281728 NA NA no change no change NA NA 4:93238490 4:93084995 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_WCRKYV0T 0.684823698437812 0.684823698437812 NA NA no change no change NA NA 4:93238490 4:93084995 ARRIBA frameshift 2 2 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_X0F9AYEC 3.76145693243936 3.76145693243936 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 20 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_ZA9XT151 3.62309532825624 3.62309532825624 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--GRID2 BS_ZRM0W01M 4.29069817085588 4.29069817085588 NA NA differentially expressed differentially expressed NA NA 4:93238490 4:93084995 ARRIBA frameshift 24 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA -GRID2--ULK4 BS_HZ707C55 1.48971247384477 6.92881077470304 NA NA no change differentially expressed NA NA 4:93626438 3:41932007 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr4--chr3]],translocation GRID2 NA ULK4 NA NA Kinase, Kinase NA NA NA -GRID2--ULK4 BS_HZ707C55 1.48971247384477 6.92881077470304 NA NA no change differentially expressed NA NA 4:93515411 3:41919818 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr4--chr3]],translocation GRID2 NA ULK4 NA NA Kinase, Kinase NA NA NA -GRIK1--GRIK1 BS_8J3B6ZB6 1.76241114622177 1.76241114622177 NA NA no change no change NA NA 21:29642825 21:29694062 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.40Mb]],duplication/non-canonical_splicing GRIK1 NA GRIK1 NA NA NA NA NA NA -GRIK1--GRIK1 BS_8RHPJ740 1.28357933083269 1.28357933083269 NA NA no change no change NA NA 21:29642825 21:29694062 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.40Mb]],duplication/non-canonical_splicing GRIK1 NA GRIK1 NA NA NA NA NA NA -GRIK1--GRIK1 BS_N6NE6B3W 1.67256047462564 1.67256047462564 NA NA no change no change NA NA 21:29642825 21:29694062 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.40Mb]],duplication/non-canonical_splicing GRIK1 NA GRIK1 NA NA NA NA NA NA -GRIK1--GRIK1 BS_N8J1DP02 -0.88848270569614 -0.88848270569614 NA NA no change no change NA NA 21:29642825 21:29694062 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr21:0.40Mb]],duplication/non-canonical_splicing GRIK1 NA GRIK1 NA NA NA NA NA NA -GRIK2--GRIK2 BS_HCP5C912 -0.0108909485796922 -0.0108909485796922 NA NA no change no change NA NA 6:101686353 6:101620093 ARRIBA frameshift 15 1 high [SELFIE,INTRACHROMOSOMAL[chr6:0.67Mb]],duplication GRIK2 NA GRIK2 NA NA NA NA NA NA -GRIK2--NKAIN2 BS_WAXJY4XQ 0.106863103581769 -2.83914623950803 NA NA no change differentially expressed NA NA 6:102051152 6:124118022 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr6:21.73Mb]],deletion GRIK2 NA NKAIN2 NA NA Oncogene NA NA NA -GRIK2--NKAIN2 BS_WAXJY4XQ 0.106863103581769 -2.83914623950803 NA NA no change differentially expressed NA NA 6:102035566 6:124283005 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:21.73Mb]],deletion GRIK2 NA NKAIN2 NA NA Oncogene NA NA NA -GRIK2--NKAIN2 BS_WJ9H4NZZ 0.534526824583529 -2.08866710687181 NA NA no change differentially expressed NA NA 6:102035566 6:124283005 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr6:21.73Mb]],deletion GRIK2 NA NKAIN2 NA NA Oncogene NA NA NA -GRIK4--ACAT1 BS_SXCZ3CXN 0.726991153250971 -1.58224791564043 NA NA no change no change NA NA 11:120940460 11:108138898 ARRIBA in-frame 6 1 high [INTRACHROMOSOMAL[chr11:12.36Mb]],duplication GRIK4 NA ACAT1 NA NA NA NA NA NA -GRIK4--ACAT1 BS_SXCZ3CXN 0.726991153250971 -1.58224791564043 NA NA no change no change NA NA 11:120956953 11:108138898 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr11:12.36Mb]],duplication GRIK4 NA ACAT1 NA NA NA NA NA NA -GRIK4--AP006295.1(187927)/RNU6-544P(12122) BS_7G42J2SK 0.220684854910899 NA NA NA no change NA NA NA 11:120511887 11:80515838 ARRIBA other 5 0 high [],inversion GRIK4 NA AP006295.1 RNU6-544P NA NA NA NA NA -GRIK4--GRIK4 BS_6MY8W3H0 3.00709549454573 3.00709549454573 NA NA differentially expressed differentially expressed NA NA 11:120905493 11:120898532 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.48Mb]],duplication/non-canonical_splicing GRIK4 NA GRIK4 NA NA NA NA NA NA -GRIK4--GRIK4 BS_9Q6Z6VJC 4.73616132848147 4.73616132848147 NA NA differentially expressed differentially expressed NA NA 11:120905493 11:120861959 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.48Mb]],duplication/non-canonical_splicing GRIK4 NA GRIK4 NA NA NA NA NA NA -GRIK4--GRIK4 BS_HCP5C912 2.36303000739509 2.36303000739509 NA NA differentially expressed differentially expressed NA NA 11:120836844 11:120815378 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.48Mb]],duplication/non-canonical_splicing GRIK4 NA GRIK4 NA NA NA NA NA NA -GRIN2B--GRIN2B BS_CXVGG342 1.49774804608379 1.49774804608379 NA NA no change no change NA NA 12:13753317 12:13753915 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.54Mb]],duplication/non-canonical_splicing GRIN2B NA GRIN2B NA NA NA NA NA NA -GRIN2B--GRIN2B BS_GMDQK06Q 1.34274746275433 1.34274746275433 NA NA no change no change NA NA 12:13753317 12:13753915 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.54Mb]],duplication/non-canonical_splicing GRIN2B NA GRIN2B NA NA NA NA NA NA -GRIN2B--GRIN2B BS_J483EMFP 3.66958697921994 3.66958697921994 NA NA differentially expressed differentially expressed NA NA 12:13753317 12:13753915 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.54Mb]],duplication/non-canonical_splicing GRIN2B NA GRIN2B NA NA NA NA NA NA -GRIN2B--GRIN2B BS_R7HZCZ8B 2.31904807272534 2.31904807272534 NA NA differentially expressed differentially expressed NA NA 12:13753317 12:13753915 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.54Mb]],duplication/non-canonical_splicing GRIN2B NA GRIN2B NA NA NA NA NA NA -GRIN2B--GRIN2B BS_ZR96A4FH 3.78459758120448 3.78459758120448 NA NA differentially expressed differentially expressed NA NA 12:13753317 12:13753915 ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.54Mb]],duplication/non-canonical_splicing GRIN2B NA GRIN2B NA NA NA NA NA NA -GRIN3A--GRIN3A BS_CREQ97QC 2.45510685679113 2.45510685679113 NA NA differentially expressed differentially expressed NA NA 9:101670060 9:101687200 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.17Mb]],duplication/non-canonical_splicing GRIN3A NA GRIN3A NA NA NA NA NA NA -GRIN3A--GRIN3A BS_K5802F84 2.00057854063078 2.00057854063078 NA NA differentially expressed differentially expressed NA NA 9:101670060 9:101687200 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.17Mb]],duplication/non-canonical_splicing GRIN3A NA GRIN3A NA NA NA NA NA NA -GRIN3A--GRIN3A BS_ZR96A4FH 3.29929411642162 3.29929411642162 NA NA differentially expressed differentially expressed NA NA 9:101613376 9:101687200 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.17Mb]],duplication/non-canonical_splicing GRIN3A NA GRIN3A NA NA NA NA NA NA -GRIP1--R3HDM2 BS_7327SDAQ 5.15020781538499 1.46014597845819 NA NA differentially expressed no change NA NA 12:66371694 12:57310463 ARRIBA frameshift 82 16 high [INTRACHROMOSOMAL[chr12:8.92Mb]],deletion GRIP1 NA R3HDM2 NA NA NA NA NA NA -GRIP1--R3HDM2 BS_7327SDAQ 5.15020781538499 1.46014597845819 NA NA differentially expressed no change NA NA 12:66371694 12:57303217 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr12:8.92Mb]],deletion GRIP1 NA R3HDM2 NA NA NA NA NA NA -GRIP1--R3HDM2 BS_7327SDAQ 5.15020781538499 1.46014597845819 NA NA differentially expressed no change NA NA 12:66377174 12:57310463 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:8.92Mb]],deletion GRIP1 NA R3HDM2 NA NA NA NA NA NA -GRIPAP1--AC233976.1 BS_FCAKKZ20 -1.85166873530105 NA NA NA no change NA NA NA X:48997250 X:51357027 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chrX:2.35Mb]],duplication GRIPAP1 NA AC233976.1 NA NA NA NA NA NA -GRIPAP1--AC233976.1 BS_FCAKKZ20 -1.85166873530105 NA NA NA no change NA NA NA X:48999238 X:51357027 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chrX:2.35Mb]],duplication GRIPAP1 NA AC233976.1 NA NA NA NA NA NA -GRK2--TAMM41 BS_07ANYSYQ NA -0.0290738026388422 NA NA NA no change NA NA 11:67279900 3:11817337 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr11--chr3]],translocation GRK2 NA TAMM41 NA Kinase NA NA NA NA -GRK3--THOC5 BS_49BQS7Z6 NA -0.245870462033129 NA NA NA no change NA NA 22:25690283 22:29529239 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr22:3.78Mb]],inversion GRK3 NA THOC5 NA Kinase Oncogene NA NA NA -GRK4--NOP14-AS1 BS_7327SDAQ 1.51301947279098 0.663152325504844 NA NA no change no change NA NA 4:3013828 4:2961354 ARRIBA frameshift 2 1 low [INTRACHROMOSOMAL[chr4:0.00Mb],LOCAL_REARRANGEMENT:+:[1870]],duplication GRK4 NA NOP14-AS1 NA Kinase NA NA NA NA -GRM1--GRM1 BS_044XZ8ST 0.17267003432939 0.17267003432939 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_063ERW0R 1.86165006836801 1.86165006836801 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 21 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_0Y66ZBWE 2.24753477204196 2.24753477204196 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 29 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_13CGKADW 2.66769194437367 2.66769194437367 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 25 5 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_1G3WYEN3 0.378774039107715 0.378774039107715 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_1T19NFJ8 0.0300717466565185 0.0300717466565185 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_273HKCT4 -0.39670164367702 -0.39670164367702 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_2AR3AP0N 0.468808887642755 0.468808887642755 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_2SFTWNVE 1.97902341031842 1.97902341031842 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 23 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_3MS8WVNR 0.768291018844735 0.768291018844735 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_3P20Q2C3 0.390395769133853 0.390395769133853 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_470DYRJQ 2.4232339320911 2.4232339320911 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 33 6 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_52426AMF 1.60518632561412 1.60518632561412 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_5PEFNDCY 1.45665990801285 1.45665990801285 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 53 8 high [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_7FWZ518S 2.24881031838587 2.24881031838587 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 12 4 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_90B22NGP 4.1605276014862 4.1605276014862 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_9DZ253JY 0.810097389591472 0.810097389591472 NA NA no change no change NA NA 6:146357694 6:146159348 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_AD4JPN9Q 0.463370875265768 0.463370875265768 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_AM70R8RG 0.358167756265846 0.358167756265846 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_B8T7M0WV 2.46723778929485 2.46723778929485 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 11 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_C7N3J4NW 1.30703858859339 1.30703858859339 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 4 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_CGB2WS2A 2.41267983918572 2.41267983918572 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 19 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_CQSAJ7BF 1.16468258555256 1.16468258555256 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_CREQ97QC 0.920112284627682 0.920112284627682 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_CVGFNCBJ 0.920112284627682 0.920112284627682 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_DMZP9G1H 1.46392488754495 1.46392488754495 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 14 4 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_DV86M0Y7 1.95820616433503 1.95820616433503 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_EHVYJAVA 0.24636446045999 0.24636446045999 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_ERWT0ZWE 3.4503279280833 3.4503279280833 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 16 4 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_ET8CJXSF 2.04697476966755 2.04697476966755 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 27 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_FEPRNEXX 3.43900520304189 3.43900520304189 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 44 8 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_G9XE3N9T 2.69059720389963 2.69059720389963 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 20 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_GCA4GET3 1.5779831611786 1.5779831611786 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 17 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_GS1KR5PK 2.09990591243446 2.09990591243446 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 16 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_GYA4V1RD 1.37247550017408 1.37247550017408 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 18 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_H3FE3TH9 -0.105027962673989 -0.105027962673989 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_H8A9PSYA 1.0982345765952 1.0982345765952 NA NA no change no change NA NA 6:146357694 6:146159348 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_HCP5C912 0.805980170357134 0.805980170357134 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 15 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_KPT2WPHW 1.6537192278396 1.6537192278396 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 19 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_KQ6ZW085 1.15540715441553 1.15540715441553 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_KX6J8TRK -0.391227297021858 -0.391227297021858 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_M4NVX721 0.572802291937211 0.572802291937211 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_ME3HKN2C 2.14094677253154 2.14094677253154 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_N6NE6B3W 3.6152455807144 3.6152455807144 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 184 22 high [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_N8J1DP02 1.031425259744 1.031425259744 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_NT9NZYFD -0.296643040042614 -0.296643040042614 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_QC3XCE6X 0.597481611024119 0.597481611024119 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_QEYPFYHD 0.848538032799948 0.848538032799948 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_QTSXW7DA 1.58784580807033 1.58784580807033 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_S69QZAJR 2.3091370820967 2.3091370820967 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 17 4 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_SDA4RMMG 2.00960269942245 2.00960269942245 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 14 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_SFKZSJN1 2.58374209656612 2.58374209656612 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 35 4 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_TG93XC55 1.97185727460923 1.97185727460923 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 19 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_TMTV769C 1.78599610781074 1.78599610781074 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_TYAYZ9ZW 2.69548207996478 2.69548207996478 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 9 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_V96WVE3Z 1.48546565149664 1.48546565149664 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_WCRKYV0T 1.25949498227481 1.25949498227481 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_WH5HDE0A 1.74346630030936 1.74346630030936 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_X0F9AYEC 2.7995339167186 2.7995339167186 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 25 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_XJTW0P8P 2.02957420677785 2.02957420677785 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_Y7F9E2E9 1.73574891989844 1.73574891989844 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 22 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_YB2RXRHT 1.12715329418321 1.12715329418321 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_YMAJC22S 0.684713968958538 0.684713968958538 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_Z1A875MW 0.795626370349137 0.795626370349137 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_Z7G68ZS2 0.604789791877648 0.604789791877648 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_ZA9XT151 1.48071133689434 1.48071133689434 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_ZH1FBX50 1.67321925032987 1.67321925032987 NA NA no change no change NA NA 6:146399699 6:146398769 ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM1--GRM1 BS_ZRM0W01M 3.1098887646348 3.1098887646348 NA NA differentially expressed differentially expressed NA NA 6:146399699 6:146398769 ARRIBA frameshift 53 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA -GRM2--SBF2 BS_07ANYSYQ 0.190848952448476 0.997235848153726 NA NA no change no change NA NA 3:51714129 11:9836479 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr3--chr11]],translocation GRM2 NA SBF2 NA NA NA NA NA NA -GRM4--GRM4 BS_09R7GDA7 0.00300837255986495 0.00300837255986495 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 8 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_0Y66ZBWE 1.38145999406589 1.38145999406589 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 24 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_13CGKADW 1.05429668665299 1.05429668665299 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_1607397Q 0.553018203415135 0.553018203415135 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_1G3WYEN3 -0.0872146086802952 -0.0872146086802952 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_37GTVG4N -0.643734363684627 -0.643734363684627 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_3KASVCSQ 0.223582480914124 0.223582480914124 NA NA no change no change NA NA 6:34091883 6:34133859 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_470DYRJQ 1.11787383698871 1.11787383698871 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 41 5 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_52426AMF 0.801155490304928 0.801155490304928 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_5PEFNDCY 0.591776647784444 0.591776647784444 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 15 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_68BW2163 0.180740321215506 0.180740321215506 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_6T4JGBGY -0.183286172381998 -0.183286172381998 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 8 5 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_74G5K7JF 0.165858393035284 0.165858393035284 NA NA no change no change NA NA 6:34091883 6:34133859 ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_7FWZ518S 0.753209907754427 0.753209907754427 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_7WNSZNE3 0.668463884172411 0.668463884172411 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_7ZV3DPGT 0.0479728714040327 0.0479728714040327 NA NA no change no change NA NA 6:34091883 6:34133859 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_81SP2HX4 0.0427931510733755 0.0427931510733755 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_92VDQ0NE -0.482024334312604 -0.482024334312604 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_9DZ253JY 0.972283658433884 0.972283658433884 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 35 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_DMZP9G1H -0.38762578390564 -0.38762578390564 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_EHVYJAVA 0.140850671378119 0.140850671378119 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_ET8CJXSF 0.571744263028701 0.571744263028701 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_FEPRNEXX 1.67388636502388 1.67388636502388 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 58 4 high [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_G9XE3N9T 1.54929854180752 1.54929854180752 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 47 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_GS1KR5PK 1.03437408781542 1.03437408781542 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_GYA4V1RD 0.721921640829739 0.721921640829739 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 22 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_H8A9PSYA 0.17052013479449 0.17052013479449 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_J71N7D09 1.86176002422103 1.86176002422103 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 72 8 high [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_K5802F84 -0.587792213487144 -0.587792213487144 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_KPT2WPHW -0.253281534492801 -0.253281534492801 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_M4NVX721 -0.363966512971458 -0.363966512971458 NA NA no change no change NA NA 6:34091883 6:34133859 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_M7QJ8VF0 0.263764626119792 0.263764626119792 NA NA no change no change NA NA 6:34091883 6:34133859 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_ME3HKN2C 1.37744623533062 1.37744623533062 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 33 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_N6NE6B3W 1.69513134089111 1.69513134089111 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 252 17 high [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_P39SQPTS -0.116832735778274 -0.116832735778274 NA NA no change no change NA NA 6:34091883 6:34133859 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_QEYPFYHD 0.504336051201644 0.504336051201644 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_QTSXW7DA 0.592974865594115 0.592974865594115 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_QV51J756 -0.207348637650098 -0.207348637650098 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_QWNBZ9RJ -0.515072123182457 -0.515072123182457 NA NA no change no change NA NA 6:34091883 6:34133859 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_R7HZCZ8B -0.400575586618343 -0.400575586618343 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_RD4D5F9F -0.327087756748205 -0.327087756748205 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_S69QZAJR 1.18687019448553 1.18687019448553 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 19 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_SFKZSJN1 1.32854963671113 1.32854963671113 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 41 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_TG93XC55 -0.244440521510552 -0.244440521510552 NA NA no change no change NA NA 6:34091883 6:34133859 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_TZ5D0A7R -0.1882131634148 -0.1882131634148 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_VA5T4KAA -0.355853227616548 -0.355853227616548 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_VMMJYN8Z -0.531447119603253 -0.531447119603253 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_W9AT0MR7 0.74346271101112 0.74346271101112 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_WCRKYV0T -0.462130316859288 -0.462130316859288 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_YMAJC22S -0.713674713677973 -0.713674713677973 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_Z7PKVY9J 0.293015672363977 0.293015672363977 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_ZA9XT151 0.204521139335987 0.204521139335987 NA NA no change no change NA NA 6:34056544 6:34062028 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_ZRM0W01M 1.52743406085477 1.52743406085477 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 56 5 high [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM4--GRM4 BS_ZXYDSBM9 0.35723985678903 0.35723985678903 NA NA no change no change NA NA 6:34132978 6:34133859 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA -GRM7--GRM7 BS_P0W5VJH4 0.0326863987033613 0.0326863987033613 NA NA no change no change NA NA 3:7461722 3:7298684 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.97Mb]],duplication/non-canonical_splicing GRM7 NA GRM7 NA NA NA NA NA NA -GRM8--GRM8 BS_09R7GDA7 1.23739858664797 1.23739858664797 NA NA no change no change NA NA 7:127242695 7:127243515 ARRIBA frameshift 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_1G3WYEN3 1.14249256670926 1.14249256670926 NA NA no change no change NA NA 7:127242695 7:127243515 ARRIBA frameshift 9 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_1KYGSMA7 0.0661817040133767 0.0661817040133767 NA NA no change no change NA NA 7:127242695 7:127243515 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_1T19NFJ8 0.312056783434834 0.312056783434834 NA NA no change no change NA NA 7:126532952 7:126533887 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_2AR3AP0N 1.00020095393317 1.00020095393317 NA NA no change no change NA NA 7:127242695 7:127243515 ARRIBA frameshift 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_3NWQXPQV 6.43402301733475 6.43402301733475 NA NA differentially expressed differentially expressed NA NA 7:127242695 7:127243515 ARRIBA frameshift 31 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_4GTESTSE -0.0597269196535871 -0.0597269196535871 NA NA no change no change NA NA 7:126532952 7:126533887 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_55JW3HFM 0.854622537547997 0.854622537547997 NA NA no change no change NA NA 7:127242695 7:127243515 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_7B89YR6K 1.76026713607242 1.76026713607242 NA NA no change no change NA NA 7:126532952 7:126533887 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_84XCR9GG 0.000971045603016842 0.000971045603016842 NA NA no change no change NA NA 7:127242695 7:127243515 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_8S86CM61 5.32966577789092 5.32966577789092 NA NA differentially expressed differentially expressed NA NA 7:127242695 7:127243515 ARRIBA frameshift 18 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_912NX4Y0 0.345474752462149 0.345474752462149 NA NA no change no change NA NA 7:127242695 7:127243515 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_92VDQ0NE 0.786098395544796 0.786098395544796 NA NA no change no change NA NA 7:126532952 7:126533887 ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_B1HVNV0T 2.63299534620201 2.63299534620201 NA NA differentially expressed differentially expressed NA NA 7:126532952 7:126533887 ARRIBA in-frame 10 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_DMZP9G1H 1.49027999926153 1.49027999926153 NA NA no change no change NA NA 7:127242695 7:127243515 ARRIBA frameshift 5 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_EN2VK7NY -0.187368874105654 -0.187368874105654 NA NA no change no change NA NA 7:127242695 7:127243515 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_JXNZYGCR 0.803466098259663 0.803466098259663 NA NA no change no change NA NA 7:127242695 7:127243515 ARRIBA frameshift 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_K5802F84 0.928827011425294 0.928827011425294 NA NA no change no change NA NA 7:126532952 7:126533887 ARRIBA in-frame 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_M4NVX721 1.60918228973639 1.60918228973639 NA NA no change no change NA NA 7:126532952 7:126533887 ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_N6NE6B3W 0.499080994298352 0.499080994298352 NA NA no change no change NA NA 7:126532952 7:126533887 ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_NT9NZYFD 0.0468559914465029 0.0468559914465029 NA NA no change no change NA NA 7:126532952 7:126533887 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_QC3XCE6X 0.334401604559802 0.334401604559802 NA NA no change no change NA NA 7:127242695 7:127248323 ARRIBA frameshift 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_QWNBZ9RJ 2.38287822284337 2.38287822284337 NA NA differentially expressed differentially expressed NA NA 7:126532952 7:126533887 ARRIBA in-frame 9 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_TDEFAPNH 2.5276567218102 2.5276567218102 NA NA differentially expressed differentially expressed NA NA 7:127242695 7:127243515 ARRIBA frameshift 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_TG93XC55 1.47222818852317 1.47222818852317 NA NA no change no change NA NA 7:126532952 7:126533887 ARRIBA in-frame 6 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_TGS109T3 2.16223186138327 2.16223186138327 NA NA differentially expressed differentially expressed NA NA 7:127242695 7:127243515 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_VMMJYN8Z 0.924780833556336 0.924780833556336 NA NA no change no change NA NA 7:126532952 7:126533887 ARRIBA in-frame 4 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_VNE0ZPBS 0.812089876356895 0.812089876356895 NA NA no change no change NA NA 7:126532952 7:126533887 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_VPMKHW9X 1.71567769497804 1.71567769497804 NA NA no change no change NA NA 7:126532952 7:126533887 ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_X67GTEM6 1.12437667949005 1.12437667949005 NA NA no change no change NA NA 7:126532952 7:126533887 ARRIBA in-frame 4 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_YB2RXRHT 1.03106939050162 1.03106939050162 NA NA no change no change NA NA 7:126532952 7:126533887 ARRIBA in-frame 4 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_YMAJC22S 0.7904554558026 0.7904554558026 NA NA no change no change NA NA 7:127242695 7:127243515 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GRM8--GRM8 BS_ZR96A4FH 1.27808185271847 1.27808185271847 NA NA no change no change NA NA 7:126532952 7:126533887 ARRIBA in-frame 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA -GSE1--C16orf74 BS_9NJHQE9F 3.4213735148399 2.36504846131043 NA NA differentially expressed differentially expressed NA NA 16:85463125 16:85751038 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr16:0.01Mb],LOCAL_INVERSION:+:-:[13880]],inversion GSE1 NA C16orf74 NA Oncogene NA NA NA NA -GSE1--FAM19A5 BS_X2QTK3QD 1.4668847124315 -3.43431085305085 NA NA no change differentially expressed NA NA 16:85357643 22:48749839 ARRIBA frameshift 20 4 high [INTERCHROMOSOMAL[chr16--chr22]],translocation GSE1 NA FAM19A5 NA Oncogene NA NA NA NA -GSE1--FAM19A5 BS_X2QTK3QD 1.4668847124315 -3.43431085305085 NA NA no change differentially expressed NA NA 16:85357643 22:48850758 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr16--chr22]],translocation GSE1 NA FAM19A5 NA Oncogene NA NA NA NA -GSG1L--GSG1L BS_HCP5C912 0.846435254157308 0.846435254157308 NA NA no change no change NA NA 16:27807487 16:27828956 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.28Mb]],duplication/non-canonical_splicing GSG1L NA GSG1L NA NA NA NA NA NA -GSG1L--GSG1L BS_QC3XCE6X 0.336948261659785 0.336948261659785 NA NA no change no change NA NA 16:27807487 16:27828956 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.28Mb]],duplication/non-canonical_splicing GSG1L NA GSG1L NA NA NA NA NA NA -GSK3A--PRR19 BS_DRY58DTF -1.31842740215146 1.32792205035909 NA NA no change no change NA NA 19:42232057 19:42309579 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr19:0.06Mb],LOCAL_INVERSION:-:+:[59473]],inversion GSK3A NA PRR19 NA Kinase, Kinase NA NA NA NA -GSK3B--LINC02485(132262)/U6(59377) BS_NH7K4CD9 1.73915214520952 NA NA -0.0294627825494395 no change NA NA no change 3:119905755 4:135256041 ARRIBA frameshift 3 0 high [],translocation GSK3B NA LINC02485 U6 Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA NA -GTF2B--KIF18B BS_3J85TTZM -0.45176472910263 12.5417965584074 NA NA no change differentially expressed NA NA 1:88887261 17:44936358 ARRIBA in-frame 3 0 high [INTERCHROMOSOMAL[chr1--chr17]],translocation GTF2B NA KIF18B NA TranscriptionFactor NA NA NA NA -GTF2F2--PCDH17 BS_VVFBW0YH 1.0452859655418 6.46297263095476 NA NA no change differentially expressed NA NA 13:45252970 13:57666468 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr13:12.35Mb]],deletion GTF2F2 NA PCDH17 NA NA TumorSuppressorGene NA NA NA -GTF2I--BRAF BS_Z1A875MW 1.75524439376199 2.29895322502449 NA NA no change differentially expressed NA NA 7:74706433 7:140783157 ARRIBA in-frame 17 3 high [INTRACHROMOSOMAL[chr7:65.96Mb]],inversion GTF2I NA BRAF NA TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -GTF2IP14--AC073210.1 BS_9V633J1X 3.95719948020857 NA NA NA differentially expressed NA NA NA 7:65087825 7:65078624 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[5323]],duplication GTF2IP14 NA AC073210.1 NA NA NA NA NA NA -GTF2IP14--AC073210.1 BS_9V633J1X 3.95719948020857 NA NA NA differentially expressed NA NA NA 7:65103439 7:65078624 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[5323]],duplication GTF2IP14 NA AC073210.1 NA NA NA NA NA NA -GTF2IP14--AC073210.1 BS_9V633J1X 3.95719948020857 NA NA NA differentially expressed NA NA NA 7:65098832 7:65078624 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[5323]],duplication GTF2IP14 NA AC073210.1 NA NA NA NA NA NA -GTF2IP5--AC073107.2 BS_3NWQXPQV 55.0542644799788 NA NA NA differentially expressed NA NA NA 7:65781412 7:65768141 ARRIBA other 19 3 high [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[5314]],duplication GTF2IP5 NA AC073107.2 NA NA NA NA NA NA -GTF3C2--MAP2(33777)/UNC80(4098) BS_RRAEQZ97 -0.143569192882836 0.419591914295395 NA 0.372373800342393 no change no change NA no change 2:27335334 2:209767895 ARRIBA other 1 1 medium [],inversion GTF3C2 NA MAP2 UNC80 NA Oncogene NA NA NA -GTF3C5--VAV2(31758)/LINC00094(1077) BS_SD8YBRBR -0.62901660183438 2.28083095987134 NA -1.06900572727553 no change differentially expressed NA no change 9:133031164 9:134024362 ARRIBA frameshift 4 0 high [],deletion GTF3C5 NA VAV2 LINC00094 NA Oncogene NA NA NA -GTSE1--TTC38 BS_53M8PP88 14.9481964434536 1.34986352082352 NA NA differentially expressed no change NA NA 22:46296931 22:46287073 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[2733]],duplication GTSE1 NA TTC38 NA NA NA NA NA TCGAFusion -GUF1--KCNIP1 BS_P4D8Y3S8 -0.329446575159801 -4.08879551107243 NA NA no change differentially expressed NA NA 4:44680532 5:170645042 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr4--chr5]],translocation GUF1 NA KCNIP1 NA NA NA NA NA NA -GYG2--RNASEH2CP1(24005)/TOMM22P2(13649) BS_ME3HKN2C 3.55216189974472 59.9209665291559 NA 9.1548462618694 differentially expressed differentially expressed NA differentially expressed X:2881224 Y:2814333 ARRIBA frameshift 4 0 medium [],translocation GYG2 NA RNASEH2CP1 TOMM22P2 NA NA NA NA NA -GYG2--SRY(2050)/RNASEH2CP1(78) BS_ME3HKN2C 3.55216189974472 -0.189827062338771 NA 59.9209665291559 differentially expressed no change NA differentially expressed X:2881224 Y:2789749 ARRIBA frameshift 3 0 low [],translocation GYG2 NA SRY RNASEH2CP1 NA TranscriptionFactor NA NA NA -H2AFY2--KIF5C BS_WH8G4VFB 0.122828778066378 -1.86119659628799 NA NA no change no change NA NA 10:70075830 2:148973336 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr10--chr2]],translocation H2AFY2 NA KIF5C NA NA NA NA NA NA -HACE1--BVES BS_SKGJ5SY9 1.3413402302831 3.32994660905189 NA NA no change differentially expressed NA NA 6:104843223 6:105124655 ARRIBA frameshift 5 4 high [INTRACHROMOSOMAL[chr6:0.24Mb]],duplication HACE1 NA BVES NA TumorSuppressorGene NA NA NA NA -HACE1--BVES BS_SKGJ5SY9 1.3413402302831 3.32994660905189 NA NA no change differentially expressed NA NA 6:104843223 6:105116868 ARRIBA in-frame 1 3 high [INTRACHROMOSOMAL[chr6:0.24Mb]],duplication HACE1 NA BVES NA TumorSuppressorGene NA NA NA NA -HCFC1--EIF4G2 BS_WG203ECV 1.98788103084284 1.96043166860919 NA NA no change no change NA NA X:153950813 11:10807294 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chrX--chr11]],translocation HCFC1 NA EIF4G2 NA NA NA NA NA NA -HDAC2-AS2--HDAC2-AS2 BS_3P20Q2C3 NA NA NA NA NA NA NA NA 6:114469299 6:114371592 ARRIBA other 3 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA -HDAC2-AS2--HDAC2-AS2 BS_7C40TRCY NA NA NA NA NA NA NA NA 6:114469299 6:114371592 ARRIBA other 12 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA -HDAC2-AS2--HDAC2-AS2 BS_AM70R8RG NA NA NA NA NA NA NA NA 6:114469299 6:114371592 ARRIBA other 23 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA -HDAC2-AS2--HDAC2-AS2 BS_M15PW2N0 NA NA NA NA NA NA NA NA 6:114469299 6:114371592 ARRIBA other 32 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA -HDAC2-AS2--HDAC2-AS2 BS_M7HCF7DW NA NA NA NA NA NA NA NA 6:114469299 6:114371592 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA -HDAC2-AS2--HDAC2-AS2 BS_QAG1RDXN NA NA NA NA NA NA NA NA 6:114469299 6:114371592 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA -HDAC2-AS2--HDAC2-AS2 BS_TDEFAPNH NA NA NA NA NA NA NA NA 6:114469299 6:114371592 ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA -HDAC2-AS2--HDAC2-AS2 BS_TW8DQH8J NA NA NA NA NA NA NA NA 6:114469299 6:114371592 ARRIBA other 19 4 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA -HDAC2-AS2--HDAC2-AS2 BS_XJTW0P8P NA NA NA NA NA NA NA NA 6:114469299 6:114371592 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA -HDAC2-AS2--HDAC2-AS2 BS_ZH1FBX50 NA NA NA NA NA NA NA NA 6:114469299 6:114371592 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_044XZ8ST 0.0356437209903996 0.0356437209903996 NA 2.70179368372321 no change no change NA differentially expressed X:72462004 X:72573724 ARRIBA frameshift 5 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_0Y66ZBWE 1.51569830992465 1.51569830992465 NA 0.793799401554069 no change no change NA no change X:72462004 X:72573724 ARRIBA frameshift 1 2 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_1G3WYEN3 0.177691818024017 0.177691818024017 NA 2.13194063807328 no change no change NA differentially expressed X:72462004 X:72573724 ARRIBA frameshift 3 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_680K119G -0.106572788103493 -0.106572788103493 NA 1.89622635613349 no change no change NA no change X:72462004 X:72573724 ARRIBA frameshift 2 1 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_7B89YR6K 0.849391102959774 0.849391102959774 NA 1.46237423059179 no change no change NA no change X:72462004 X:72573724 ARRIBA frameshift 3 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_7XRN3CFX 0.140289077450283 0.140289077450283 NA 3.12623608666862 no change no change NA differentially expressed X:72462004 X:72573724 ARRIBA frameshift 4 0 medium [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_8VAZSJEN -0.00373653408701321 -0.00373653408701321 NA 3.07287403217185 no change no change NA differentially expressed X:72462004 X:72573724 ARRIBA frameshift 2 1 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_9RT63JD9 0.511435007117001 0.511435007117001 NA 0.944446522457324 no change no change NA no change X:72462004 X:72573724 ARRIBA frameshift 2 1 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_AD4JPN9Q 0.49039123550666 0.49039123550666 NA 3.34328327261687 no change no change NA differentially expressed X:72462004 X:72573724 ARRIBA frameshift 8 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_AGS1HHGF 0.763215061338767 0.763215061338767 NA 0.849100870005491 no change no change NA no change X:72462004 X:72573724 ARRIBA frameshift 4 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_AKRHBPNZ 0.696780909964523 0.696780909964523 NA 3.31252496821467 no change no change NA differentially expressed X:72462004 X:72573724 ARRIBA frameshift 4 0 medium [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_B741RZY9 0.0849694601968664 0.0849694601968664 NA 1.21733564172183 no change no change NA no change X:72462004 X:72573724 ARRIBA frameshift 1 1 medium [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_C51RB0YR 1.02657747158353 1.02657747158353 NA 4.42275823731763 no change no change NA differentially expressed X:72462004 X:72573724 ARRIBA frameshift 6 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_CVGFNCBJ 0.0604161352369526 0.0604161352369526 NA 1.64224292826193 no change no change NA no change X:72462004 X:72573724 ARRIBA frameshift 3 1 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_GYA4V1RD 0.388978048533266 0.388978048533266 NA 0.761547562225826 no change no change NA no change X:72462004 X:72573724 ARRIBA frameshift 3 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_W6AC5J3C -0.0109569840180129 -0.0109569840180129 NA 4.49113957146241 no change no change NA differentially expressed X:72462004 X:72573724 ARRIBA frameshift 6 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_WRQHPSXQ 1.8678424858618 1.8678424858618 NA 5.20521297663305 no change no change NA differentially expressed X:72462004 X:72573724 ARRIBA frameshift 21 3 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_YE1MAQYJ 0.0213881752470714 0.0213881752470714 NA 0.703915106736101 no change no change NA no change X:72462004 X:72573724 ARRIBA frameshift 3 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_ZRM0W01M 0.0989030474545463 0.0989030474545463 NA -0.272056359863345 no change no change NA no change X:72462004 X:72573724 ARRIBA frameshift 3 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_ZVZDDW2G -0.284252361687103 -0.284252361687103 NA 1.19088929612974 no change no change NA no change X:72462004 X:72573724 ARRIBA frameshift 3 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC8--HDAC8(621)/PHKA1(5090) BS_ZZPBANDD 0.986486357090233 0.986486357090233 NA 2.95030001686615 no change no change NA differentially expressed X:72462004 X:72573724 ARRIBA frameshift 4 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA -HDAC9--CDCA7L BS_THSPSG2Z 2.68617632523528 3.41712817504639 NA NA differentially expressed differentially expressed NA NA 7:18496324 7:21916894 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:2.90Mb]],inversion HDAC9 NA CDCA7L NA NA NA NA NA NA -HDAC9--KLHL7 BS_KE56MMY0 3.68879169198115 2.99950732298554 NA NA differentially expressed differentially expressed NA NA 7:18162349 7:23152067 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:4.10Mb]],deletion HDAC9 NA KLHL7 NA NA NA NA NA NA -HDAC9--KLHL7 BS_KE56MMY0 3.68879169198115 2.99950732298554 NA NA differentially expressed differentially expressed NA NA 7:18162349 7:23140769 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:4.10Mb]],deletion HDAC9 NA KLHL7 NA NA NA NA NA NA -HDGFL1(2689)/AL033539.1(14782)--CASC15 BS_TW8DQH8J 3.20739646681359 5.80894863733486 NA NA differentially expressed differentially expressed NA NA 6:22574355 6:22349229 ARRIBA other 3 0 medium [],duplication HDGFL1 AL033539.1 CASC15 NA NA NA NA NA NA -HDGFL3--GOLGA6L10 BS_N6N147BY NA 3.31026440929413 NA NA NA differentially expressed NA NA 15:83207331 15:82347629 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr15:0.76Mb]],deletion HDGFL3 NA GOLGA6L10 NA NA NA NA NA NA -HEATR5A--FAM19A5 BS_ZVZDDW2G 3.01529250385036 -3.75328159911884 NA NA differentially expressed differentially expressed NA NA 14:31321499 22:48811960 ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr14--chr22]],translocation HEATR5A NA FAM19A5 NA NA NA NA NA NA -HEATR5A--HEATR5A BS_QV51J756 2.64711898190795 2.64711898190795 NA NA differentially expressed differentially expressed NA NA 14:31302295 14:31347907 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing HEATR5A NA HEATR5A NA NA NA NA NA NA -HEATR5A--HEATR5A BS_VP5Y45Z7 3.83100927441846 3.83100927441846 NA NA differentially expressed differentially expressed NA NA 14:31302295 14:31347907 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing HEATR5A NA HEATR5A NA NA NA NA NA NA -HEATR5B--HEATR5B BS_G63HYD6N 0.549137068013521 0.549137068013521 NA NA no change no change NA NA 2:37056440 2:37060733 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.12Mb]],duplication/non-canonical_splicing HEATR5B NA HEATR5B NA NA NA NA NA NA -HECTD1--AC104042.1(191045)/SNORA31(813213) BS_6JHXXVR7 1.51445235345732 NA NA 5.65538771212347 no change NA NA differentially expressed 14:31156840 11:36888912 ARRIBA frameshift 22 4 high [],translocation HECTD1 NA AC104042.1 SNORA31 NA NA NA NA NA -HECTD1--AC104042.1(191045)/SNORA31(813213) BS_KE56MMY0 1.20455847501817 NA NA 6.00041247217784 no change NA NA differentially expressed 14:31156840 11:36888912 ARRIBA frameshift 3 1 high [],translocation HECTD1 NA AC104042.1 SNORA31 NA NA NA NA NA -HECTD1--GPATCH2 BS_6JHXXVR7 1.51445235345732 2.0834742617137 NA NA no change differentially expressed NA NA 14:31156840 1:217630846 ARRIBA frameshift 7 0 high [INTERCHROMOSOMAL[chr14--chr1]],translocation/5'-5' HECTD1 NA GPATCH2 NA NA NA NA NA NA -HECTD1--PKP4P1 BS_6JHXXVR7 1.51445235345732 2.19171204087086 NA NA no change differentially expressed NA NA 14:31205797 2:209179425 ARRIBA frameshift 15 0 high [INTERCHROMOSOMAL[chr14--chr2]],translocation/5'-5' HECTD1 NA PKP4P1 NA NA NA NA NA NA -HECTD4--KCNA1 BS_H4B5Y6S0 -0.21363493711277 0.764878382646851 NA NA no change no change NA NA 12:112257912 12:4912594 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:107.24Mb]],inversion HECTD4 NA KCNA1 NA NA NA NA NA NA -HECW1--AC007036.1(12568)/ZNRF2(92725) BS_6WP1FHTE 3.89854914531316 NA NA 4.72007251750714 differentially expressed NA NA differentially expressed 7:43112937 7:30191582 ARRIBA other 3 0 medium [],duplication HECW1 NA AC007036.1 ZNRF2 NA NA NA NA NA -HECW1--AC096559.1(96952)/AC009486.1(13318) BS_E60JZ9Z3 -0.00573226864866502 -0.822079799141353 NA NA no change no change NA NA 7:43112937 2:12702097 ARRIBA other 4 0 high [],translocation HECW1 NA AC096559.1 AC009486.1 NA NA NA NA NA -HECW1--HECW1 BS_0WVJYM9R 0.730585271200713 0.730585271200713 NA NA no change no change NA NA 7:43463799 7:43456297 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_1T19NFJ8 1.27019518728299 1.27019518728299 NA NA no change no change NA NA 7:43501322 7:43492075 ARRIBA frameshift 7 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_2XD3MNKD 0.910292412264969 0.910292412264969 NA NA no change no change NA NA 7:43501322 7:43492075 ARRIBA frameshift 6 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_7FWZ518S 1.01692764057247 1.01692764057247 NA NA no change no change NA NA 7:43493180 7:43450828 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_AG4H9S3J 0.761959051992001 0.761959051992001 NA NA no change no change NA NA 7:43501322 7:43492075 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_B1HVNV0T 2.40766084721354 2.40766084721354 NA NA differentially expressed differentially expressed NA NA 7:43501322 7:43492075 ARRIBA frameshift 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_BJDNWMJH 1.72615656526021 1.72615656526021 NA NA no change no change NA NA 7:43493180 7:43450828 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_C7N3J4NW 3.72727195920479 3.72727195920479 NA NA differentially expressed differentially expressed NA NA 7:43501322 7:43492075 ARRIBA frameshift 10 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_DFGS950G 0.694995749817463 0.694995749817463 NA NA no change no change NA NA 7:43501322 7:43492075 ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_EHVYJAVA 2.39640157556652 2.39640157556652 NA NA differentially expressed differentially expressed NA NA 7:43501322 7:43468920 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_FEPRNEXX 2.67689852578694 2.67689852578694 NA NA differentially expressed differentially expressed NA NA 7:43501322 7:43468920 ARRIBA frameshift 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_FJZPQZ2C 0.240947540673043 0.240947540673043 NA NA no change no change NA NA 7:43501322 7:43468920 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_HCP5C912 2.02547839289851 2.02547839289851 NA NA differentially expressed differentially expressed NA NA 7:43501322 7:43492075 ARRIBA frameshift 16 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_K5802F84 2.73392301483753 2.73392301483753 NA NA differentially expressed differentially expressed NA NA 7:43501322 7:43468920 ARRIBA frameshift 10 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_KX6J8TRK 0.40401344064396 0.40401344064396 NA NA no change no change NA NA 7:43501322 7:43492075 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_QC3XCE6X 2.84226760800064 2.84226760800064 NA NA differentially expressed differentially expressed NA NA 7:43501322 7:43468920 ARRIBA frameshift 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_TMTV769C 1.81311269483086 1.81311269483086 NA NA no change no change NA NA 7:43501322 7:43492075 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_W18SF91A -0.509880589414012 -0.509880589414012 NA NA no change no change NA NA 7:43501322 7:43492075 ARRIBA frameshift 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_WCRKYV0T 3.757289185298 3.757289185298 NA NA differentially expressed differentially expressed NA NA 7:43501322 7:43492075 ARRIBA frameshift 12 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--HECW1 BS_YMAJC22S 3.37127744925382 3.37127744925382 NA NA differentially expressed differentially expressed NA NA 7:43501322 7:43492075 ARRIBA frameshift 12 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA -HECW1--MTURN BS_6WP1FHTE 3.89854914531316 -1.22168353205973 NA NA differentially expressed no change NA NA 7:43112937 7:30157438 ARRIBA other 59 3 high [INTRACHROMOSOMAL[chr7:12.95Mb]],duplication HECW1 NA MTURN NA NA NA NA NA NA -HECW1--MTURN BS_6WP1FHTE 3.89854914531316 -1.22168353205973 NA NA differentially expressed no change NA NA 7:43114391 7:30157438 ARRIBA other 37 5 high [INTRACHROMOSOMAL[chr7:12.95Mb]],duplication HECW1 NA MTURN NA NA NA NA NA NA -HELQ--ABRAXAS1 BS_F9WKPDFG 2.07160806582357 NA NA NA differentially expressed NA NA NA 4:83448783 4:83469151 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr4:0.00Mb],LOCAL_REARRANGEMENT:-:[3661]],duplication HELQ NA ABRAXAS1 NA NA NA NA NA NA -HELZ--PITPNC1 BS_4JWBB28H 4.43543978679025 -2.38881129017586 NA NA differentially expressed differentially expressed NA NA 17:67218595 17:67575318 ARRIBA frameshift 12 2 high [ChimerSeq,INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/5'-5' HELZ NA PITPNC1 NA NA NA NA NA TCGAFusion -HELZ--PITPNC1 BS_4JWBB28H 4.43543978679025 -2.38881129017586 NA NA differentially expressed differentially expressed NA NA 17:67218595 17:67605227 ARRIBA frameshift 2 0 low [ChimerSeq,INTRACHROMOSOMAL[chr17:0.13Mb]],inversion HELZ NA PITPNC1 NA NA NA NA NA TCGAFusion -HERC2P3--HERC2P3 BS_N6NE6B3W -0.764961035919661 -0.764961035919661 NA NA no change no change NA NA 15:20383291 15:20505493 ARRIBA other 2 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing HERC2P3 NA HERC2P3 NA NA NA NA NA NA -HEY1--NCOA2 BS_1XJ73KBQ 5.77090436369981 8.72166180428209 NA NA differentially expressed differentially expressed NA NA 8:79766651 8:70144848 ARRIBA in-frame 252 54 high [HGNC_GENEFAM,ChimerKB,ChimerPub,Cosmic,INTRACHROMOSOMAL[chr8:9.36Mb]],deletion HEY1 NA NCOA2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -HEY1--NCOA2 BS_1XJ73KBQ 5.77090436369981 8.72166180428209 NA NA differentially expressed differentially expressed NA NA 8:79766651 8:70141399 ARRIBA in-frame 93 12 high [HGNC_GENEFAM,ChimerKB,ChimerPub,Cosmic,INTRACHROMOSOMAL[chr8:9.36Mb]],deletion HEY1 NA NCOA2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -HEYL--RACK1 BS_NJ4WPQVK 1.86142201411719 NA NA NA no change NA NA NA 1:39631497 5:181237041 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr1--chr5]],translocation HEYL NA RACK1 NA TranscriptionFactor Oncogene NA NA NA -HFM1--HFM1 BS_7G42J2SK 2.7240174890436 2.7240174890436 NA NA differentially expressed differentially expressed NA NA 1:91273712 1:91316184 ARRIBA frameshift 15 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing HFM1 NA HFM1 NA NA NA NA NA NA -HFM1--HFM1 BS_QRNSKFMS 0.324313017773114 0.324313017773114 NA NA no change no change NA NA 1:91347429 1:91385834 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing HFM1 NA HFM1 NA NA NA NA NA NA -HGSNAT--BHMT BS_4D9DD103 0.05981793218522 12.992223383672 NA NA no change differentially expressed NA NA 8:43180201 5:79130933 ARRIBA other 37 9 high [INTERCHROMOSOMAL[chr8--chr5]],translocation/3'-3' HGSNAT NA BHMT NA NA NA NA NA NA -HGSNAT--BHMT BS_77317DY4 1.43308746888367 16.164797535197 NA NA no change differentially expressed NA NA 8:43180201 5:79130933 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr8--chr5]],translocation/3'-3' HGSNAT NA BHMT NA NA NA NA NA NA -HGSNAT--BHMT BS_CYEY58NY 0.0935629314150007 19.5010816515919 NA NA no change differentially expressed NA NA 8:43180201 5:79130933 ARRIBA other 50 5 high [INTERCHROMOSOMAL[chr8--chr5]],translocation/3'-3' HGSNAT NA BHMT NA NA NA NA NA NA -HGSNAT--BHMT BS_HB03GSHF -0.119003731922707 19.4928478204214 NA NA no change differentially expressed NA NA 8:43180201 5:79130933 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr8--chr5]],translocation/3'-3' HGSNAT NA BHMT NA NA NA NA NA NA -HGSNAT--BHMT BS_JTMXAMB7 -0.66048343156471 17.4030458876456 NA NA no change differentially expressed NA NA 8:43179382 5:79130935 ARRIBA other 1 2 high [INTERCHROMOSOMAL[chr8--chr5]],translocation/3'-3' HGSNAT NA BHMT NA NA NA NA NA NA -HGSNAT--BHMT BS_JZRM1S3T 0.0851852675862532 18.5472863212496 NA NA no change differentially expressed NA NA 8:43180201 5:79130933 ARRIBA other 17 3 high [INTERCHROMOSOMAL[chr8--chr5]],translocation/3'-3' HGSNAT NA BHMT NA NA NA NA NA NA -HGSNAT--BHMT BS_QEYPFYHD 0.263657022504265 1.93916931697239 NA NA no change no change NA NA 8:43180201 5:79130933 ARRIBA other 2 1 high [INTERCHROMOSOMAL[chr8--chr5]],translocation/3'-3' HGSNAT NA BHMT NA NA NA NA NA NA -HGSNAT--BHMT BS_YETBN0RQ -0.00813907059126222 16.4301164052348 NA NA no change differentially expressed NA NA 8:43180201 5:79130933 ARRIBA other 8 1 high [INTERCHROMOSOMAL[chr8--chr5]],translocation/3'-3' HGSNAT NA BHMT NA NA NA NA NA NA -HHAT--AL035414.1(17090)/HHAT(6622) BS_6T4JGBGY 5.01399406774414 NA NA 5.01399406774414 differentially expressed NA NA differentially expressed 1:210418325 1:210321630 ARRIBA frameshift 3 0 medium [],duplication HHAT NA AL035414.1 HHAT NA NA NA NA NA -HHAT--AL035414.1(17090)/HHAT(6622) BS_FAVRBEW7 4.6290964653397 NA NA 4.6290964653397 differentially expressed NA NA differentially expressed 1:210387581 1:210321630 ARRIBA frameshift 3 1 high [],duplication HHAT NA AL035414.1 HHAT NA NA NA NA NA -HHAT--AL035414.1(17090)/HHAT(6622) BS_Z85M2R3N 5.15851913133795 NA NA 5.15851913133795 differentially expressed NA NA differentially expressed 1:210418325 1:210321630 ARRIBA frameshift 4 3 high [],duplication HHAT NA AL035414.1 HHAT NA NA NA NA NA -HIF1AN--AL162274.3(24002)/JAKMIP3(80823) BS_P9JP6JFA 2.89624793395999 NA NA -3.22284420312624 differentially expressed NA NA differentially expressed 10:100540782 10:132023848 ARRIBA frameshift 4 1 high [],inversion HIF1AN NA AL162274.3 JAKMIP3 NA NA NA NA NA -HIF1AN--AL162274.3(25448)/JAKMIP3(79377) BS_4QW2S1Q8 3.01673512711964 NA NA -2.75031567035846 differentially expressed NA NA differentially expressed 10:100536661 10:132025294 ARRIBA frameshift 10 3 high [],inversion HIF1AN NA AL162274.3 JAKMIP3 NA NA NA NA NA -HIF1AN--AL162274.3(25448)/JAKMIP3(79377) BS_MX23ZY0Y 3.10778168758454 NA NA -2.75031567035846 differentially expressed NA NA differentially expressed 10:100536661 10:132025294 ARRIBA frameshift 6 0 high [],inversion HIF1AN NA AL162274.3 JAKMIP3 NA NA NA NA NA -HIP1--IGF2BP2 BS_1D6PZNKN 4.01387880228366 4.79042819116115 NA NA differentially expressed differentially expressed NA NA 7:75738801 3:185652168 ARRIBA in-frame 5 0 medium [INTERCHROMOSOMAL[chr7--chr3]],translocation HIP1 NA IGF2BP2 NA CosmicCensus, Oncogene CosmicCensus NA NA NA -HIPK3--AC097655.1(564511)/LINC02496(147489) BS_RCCN63K6 3.84106635690822 NA NA NA differentially expressed NA NA NA 11:33257889 4:60603097 ARRIBA other 3 0 medium [],translocation HIPK3 NA AC097655.1 LINC02496 Kinase, Kinase NA NA NA NA -HIPK3--AC097655.1(621308)/LINC02496(90692) BS_RCCN63K6 3.84106635690822 NA NA NA differentially expressed NA NA NA 11:33257889 4:60659894 ARRIBA other 3 0 medium [],translocation HIPK3 NA AC097655.1 LINC02496 Kinase, Kinase NA NA NA NA -HIPK3--AL078612.1 BS_49FQXT2E 4.10378842460816 NA NA NA differentially expressed NA NA NA 11:33287511 11:32101418 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr11:1.15Mb]],inversion HIPK3 NA AL078612.1 NA Kinase, Kinase NA NA NA NA -HIPK3--EHF(24174)/AC087783.2(24369) BS_3J85TTZM 5.43704280710522 -0.483864516775706 NA NA differentially expressed no change NA NA 11:33328633 11:34685231 ARRIBA frameshift 11 0 high [],deletion HIPK3 NA EHF AC087783.2 Kinase, Kinase TumorSuppressorGene, TranscriptionFactor NA NA NA -HIPK3--NELL1 BS_B1C6GZ84 3.22233262751274 -1.16286107640319 NA NA differentially expressed no change NA NA 11:33257889 11:20672332 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr11:11.68Mb]],inversion/3'-3' HIPK3 NA NELL1 NA Kinase, Kinase NA NA NA NA -HIPK3(19866)/AL137161.1(26327)--NELL1 BS_SFRQXM76 1.57433048064221 1.07564581693941 NA NA no change no change NA NA 11:33376889 11:21113589 ARRIBA other 2 0 high [],duplication HIPK3 AL137161.1 NELL1 NA Kinase, Kinase NA NA NA NA -HIVEP1--HIVEP1 BS_FEPRNEXX 0.803889896161693 0.803889896161693 NA NA no change no change NA NA 6:12135892 6:12089184 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.16Mb]],duplication/non-canonical_splicing HIVEP1 NA HIVEP1 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -HIVEP3--CACNA1I(39639)/ENTHD1(13668) BS_P4D8Y3S8 1.73120131769286 0.41591694390524 NA 0.458460862257757 no change no change NA no change 1:41700916 22:39729376 ARRIBA other 6 0 high [],translocation HIVEP3 NA CACNA1I ENTHD1 TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA -HIVEP3--HTR1D(272)/AL109936.1(49764) BS_MN5XVP5A 2.11150522566543 3.11915084052667 NA NA differentially expressed differentially expressed NA NA 1:41918413 1:23195001 ARRIBA other 7 0 high [],deletion HIVEP3 NA HTR1D AL109936.1 TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA -HIVEP3--HTR1D(272)/AL109936.1(49764) BS_RCCN63K6 2.58115962365268 2.58790811684227 NA NA differentially expressed differentially expressed NA NA 1:41918413 1:23195001 ARRIBA other 9 0 medium [],deletion HIVEP3 NA HTR1D AL109936.1 TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA -HLTF--LINC01983 BS_FAQQ0GCQ 0.392973513684276 NA NA NA no change NA NA NA 3:149063431 3:195840117 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:46.75Mb]],duplication HLTF NA LINC01983 NA TumorSuppressorGene, Oncogene NA NA NA NA -HMG20A--TSPAN3 BS_0SCXXM6N 2.37101022962566 1.05892506647464 NA NA differentially expressed no change NA NA 15:77421004 15:77056255 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.34Mb]],inversion HMG20A NA TSPAN3 NA TranscriptionFactor NA NA NA NA -HMGA2--DTX1 BS_X23724NJ 42.3761169273448 1.52902513191634 NA NA differentially expressed no change NA NA 12:65838569 12:113077424 ARRIBA frameshift 36 2 high [INTRACHROMOSOMAL[chr12:47.09Mb]],deletion HMGA2 NA DTX1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -HMGA2--DTX1 BS_X23724NJ 42.3761169273448 1.52902513191634 NA NA differentially expressed no change NA NA 12:65838569 12:113093162 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:47.09Mb]],deletion HMGA2 NA DTX1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -HMGA2--NCOR2 BS_NDFDQBCZ 22.0947965752701 2.74222615816646 NA NA differentially expressed differentially expressed NA NA 12:65838569 12:124378384 ARRIBA in-frame 10 0 high [INTRACHROMOSOMAL[chr12:58.36Mb]],inversion HMGA2 NA NCOR2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA -HMGB1P5(199176)/AC092421.1(88096)--ZNF385D BS_1BWP5MCT 0.752382478579064 2.39634717228632 -0.0294627825494395 NA no change differentially expressed no change NA 3:22582105 3:22169035 ARRIBA other 8 0 high [],deletion HMGB1P5 AC092421.1 ZNF385D NA NA TranscriptionFactor NA NA NA -HMGB3P23(327952)/RNA5SP281(320446)--ACO1 BS_6JHXXVR7 -0.0400103385914836 1.90510181263508 NA NA no change no change NA NA 9:31973112 9:32405485 ARRIBA other 2 0 medium [],deletion HMGB3P23 RNA5SP281 ACO1 NA NA NA NA NA NA -HMGB3P23(327952)/RNA5SP281(320446)--ACO1 BS_6VPKXXMR -0.0400103385914836 0.758001870258902 NA NA no change no change NA NA 9:31973112 9:32405485 ARRIBA other 2 0 medium [],deletion HMGB3P23 RNA5SP281 ACO1 NA NA NA NA NA NA -HMGB3P23(327952)/RNA5SP281(320446)--ACO1 BS_E60JZ9Z3 -0.0400103385914836 1.34861402829549 NA NA no change no change NA NA 9:31973112 9:32405485 ARRIBA other 7 0 medium [],deletion HMGB3P23 RNA5SP281 ACO1 NA NA NA NA NA NA -HMGB3P23(327952)/RNA5SP281(320446)--ACO1 BS_TGS109T3 -0.0400103385914836 2.04010058757277 NA NA no change differentially expressed NA NA 9:31973112 9:32405485 ARRIBA other 3 0 medium [],deletion HMGB3P23 RNA5SP281 ACO1 NA NA NA NA NA NA -HMGB3P23(327952)/RNA5SP281(320446)--ACO1 BS_TXZ7KHTQ -0.0400103385914836 0.854568402445115 NA NA no change no change NA NA 9:31973112 9:32405485 ARRIBA other 3 0 high [],deletion HMGB3P23 RNA5SP281 ACO1 NA NA NA NA NA NA -HMGCLL1--HMGCLL1 BS_YNEQJ6AH -0.904601807663292 -0.904601807663292 NA NA no change no change NA NA 6:55479528 6:55542140 ARRIBA frameshift 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication HMGCLL1 NA HMGCLL1 NA NA NA NA NA NA -HMGXB4--LINC01399 BS_70FFPA51 2.34033637464361 50.7822852528155 NA NA differentially expressed differentially expressed NA NA 22:35295363 22:35139523 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr22:0.03Mb],LOCAL_INVERSION:+:-:[26396]],inversion HMGXB4 NA LINC01399 NA NA NA NA NA NA -HNF4G--PAG1 BS_HZRM07TW 1.83010436356232 1.30192669907238 NA NA no change no change NA NA 8:75490208 8:81070170 ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr8:5.40Mb]],inversion HNF4G NA PAG1 NA TranscriptionFactor NA NA NA NA -HNF4G--PAG1 BS_HZRM07TW 1.83010436356232 1.30192669907238 NA NA no change no change NA NA 8:75407964 8:81030089 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:5.40Mb]],inversion HNF4G NA PAG1 NA TranscriptionFactor NA NA NA NA -HNRNPA2B1--MET BS_97M1E2DW -0.691608512068411 5.80988552352964 NA NA no change differentially expressed NA NA 7:26200572 7:116699071 ARRIBA frameshift 14 2 medium [INTRACHROMOSOMAL[chr7:90.47Mb]],inversion HNRNPA2B1 NA MET NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -HNRNPA2B1--MET BS_97M1E2DW -0.691608512068411 5.80988552352964 NA NA no change differentially expressed NA NA 7:26200572 7:116731668 ARRIBA in-frame 10 0 medium [INTRACHROMOSOMAL[chr7:90.47Mb]],inversion HNRNPA2B1 NA MET NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -HNRNPA2B1--MET BS_97M1E2DW -0.691608512068411 5.80988552352964 NA NA no change differentially expressed NA NA 7:26200572 7:116695750 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr7:90.47Mb]],inversion HNRNPA2B1 NA MET NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -HNRNPDL--AP001458.2 BS_8ZD6J47V -0.274388740455287 NA NA NA no change NA NA NA 4:82429248 11:62664972 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr4--chr11]],translocation HNRNPDL NA AP001458.2 NA NA NA NA NA NA -HNRNPDL--C11orf98 BS_8ZD6J47V -0.274388740455287 0.826688211450149 NA NA no change no change NA NA 4:82429248 11:62664972 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr4--chr11]],translocation HNRNPDL NA C11orf98 NA NA NA NA NA NA -HNRNPDL--LBHD1 BS_8ZD6J47V -0.274388740455287 0.24912380578979 NA NA no change no change NA NA 4:82429248 11:62664972 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr4--chr11]],translocation HNRNPDL NA LBHD1 NA NA NA NA NA NA -HNRNPH1--PLEC BS_PKK3BZRG 0.565509329453241 1.29386672408211 NA NA no change no change NA NA 5:179619275 8:143923468 ARRIBA frameshift 1 1 high [INTERCHROMOSOMAL[chr5--chr8]],translocation HNRNPH1 NA PLEC NA NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_03FT4S8B 12.6916751236006 12.6916751236006 NA 1.68432095478583 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 7 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_063ERW0R 15.5034892208236 15.5034892208236 NA 2.20400181202891 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 9 0 low [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_0C7VZC0A 14.7493309491511 14.7493309491511 NA 4.46190912376012 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_0J9SHHSC 13.9936835159601 13.9936835159601 NA 6.91658625184634 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 5 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_0Y66ZBWE 22.702258743314 22.702258743314 NA 9.92388364136149 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 20 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_196BBNEJ 16.252000007163 16.252000007163 NA 1.14686982594104 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 7 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_24AHZ9ZW 12.2463758160162 12.2463758160162 NA 3.19449724678976 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 9 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_273HKCT4 21.2568331650697 21.2568331650697 NA 14.2095543509518 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 19 2 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_34201DKZ 18.5964958577247 18.5964958577247 NA 1.41789230193083 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 15 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_3P20Q2C3 23.1133438025598 23.1133438025598 NA 14.0299076618871 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 15 2 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_478TN841 11.9439077250062 11.9439077250062 NA 3.19449724678976 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_49852ZBH 12.6916751236006 12.6916751236006 NA 4.01276673391932 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 9 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_49BQS7Z6 11.2412745255331 11.2412745255331 NA 0.448136384069937 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 4 0 low [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_4FZS7TX4 15.5312967463577 15.5312967463577 NA 0.013484335598612 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 4 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_4NF35AF6 12.2066164282704 12.2066164282704 NA 3.07404520757985 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 7 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_4T0HPZDC 13.9443306687582 13.9443306687582 NA 2.07568343250741 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_52426AMF 14.8545239107002 14.8545239107002 NA 2.33128116493143 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 7 0 low [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_5965SFPZ 16.5550490745315 16.5550490745315 NA 7.10483897134746 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 14 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_5CMGN56B 17.3517850851314 17.3517850851314 NA 6.14018576873981 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 7 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_5PV5N4HQ 17.0153591860047 17.0153591860047 NA 9.92388364136149 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 9 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_5YJEPPTP 18.8419579763417 18.8419579763417 NA 8.27641761860809 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 21 3 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_66HQ3E4Z 17.0742479598261 17.0742479598261 NA 2.95266302758446 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_67Z63A2K 17.6322541934405 17.6322541934405 NA -0.4335291297181 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 6 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_68BW2163 24.8864256114672 24.8864256114672 NA 13.0995228709324 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 12 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_6P50QTPP 14.1401738858035 14.1401738858035 NA 1.00958585986558 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 7 0 low [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_775HDFNY 14.6886764696826 14.6886764696826 NA 4.23894206336917 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 7 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_7BTZQKYY 16.7759624936045 16.7759624936045 NA 0.304583658509769 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 17 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_7Z93ZYMS 15.6827543499703 15.6827543499703 NA 3.55041239608526 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 7 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_8J3B6ZB6 17.2371598932598 17.2371598932598 NA 1.94630892276079 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 10 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_8RCR7Y4B 15.1341319740165 15.1341319740165 NA 5.32343509065531 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 8 0 low [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_8VAZSJEN 15.8585946593974 15.8585946593974 NA 3.55041239608526 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_9Q6Z6VJC 15.898700535274 15.898700535274 NA 3.89844685403131 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_AD4JPN9Q 15.0321040288333 15.0321040288333 NA 1.68432095478583 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_AGTPCRR4 17.6101285002118 17.6101285002118 NA 0.013484335598612 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 7 0 low [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_ARFQ1WG3 27.0600993634046 27.0600993634046 NA 20.8584579233337 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 24 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_B7QS4DHK 14.6276196358339 14.6276196358339 NA 0.590389972127851 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_BJDNWMJH 15.6690880015785 15.6690880015785 NA -0.28310775025813 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 8 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_BKQZ550R 13.5740901756277 13.5740901756277 NA 2.83033622968671 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 6 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_BPSTSCBJ 17.4986951300582 17.4986951300582 NA 3.19449724678976 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_CTR5X93B 13.0074938490418 13.0074938490418 NA 1.94630892276079 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 7 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_CZ82ANWP 19.3232757075366 19.3232757075366 NA 6.14018576873981 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 16 2 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_D8N31T39 14.7945609367315 14.7945609367315 NA 11.9738987756086 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 6 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_E4GC9EXR 15.1196256133291 15.1196256133291 NA 5.00587046773197 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 7 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_EHVYJAVA 16.8844621855469 16.8844621855469 NA 3.89844685403131 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 14 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_ERJAJ0KA 18.9287460007589 18.9287460007589 NA 3.66728218500629 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 12 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_ET8CJXSF 14.3161082143521 14.3161082143521 NA 3.55041239608526 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_FWMJPKCV 20.6404165060188 20.6404165060188 NA 5.53163567349289 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 40 3 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_G7AGNB5G 21.5068051211462 21.5068051211462 NA 6.53317909298457 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 22 0 low [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_GHNJ4CYC 14.9585282257763 14.9585282257763 NA 6.14018576873981 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 7 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_GV3NZ9QD 15.1486155080057 15.1486155080057 NA 1.00958585986558 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 9 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_GYXSDZ56 12.1866721432167 12.1866721432167 NA 1.41789230193083 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 5 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_HA20Y4XY 18.1060295246346 18.1060295246346 NA 3.78328945840132 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 10 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_HC5M8JTC 11.9028171034097 11.9028171034097 NA 1.55167110259995 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 6 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_HQ5BJ6MW 19.5233767176268 19.5233767176268 NA 14.3871710904818 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_J8VX4D17 18.6658876647543 18.6658876647543 NA 0.304583658509769 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 11 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_JKXA3FQC 17.1210892006187 17.1210892006187 NA 8.01369984520553 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 10 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_JVA2NQFF 17.1210892006187 17.1210892006187 NA 10.6870876258041 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 8 4 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_KXH37MPN 16.174652628037 16.174652628037 NA 4.46190912376012 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 13 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_MBSTWZA6 14.2045397701411 14.2045397701411 NA 3.07404520757985 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 7 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_MKM0EEN1 17.6432971269198 17.6432971269198 NA 4.35082092854623 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 13 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_MKP2Y41Z 19.4873167931463 19.4873167931463 NA 1.55167110259995 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_MWWZBQ60 20.1662010952254 20.1662010952254 NA 5.21829145983092 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 18 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_N1E0H8YQ 15.2493670810785 15.2493670810785 NA 10.001893301221 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 4 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_N6NE6B3W 10.8341390866538 10.8341390866538 NA 0.159707847708334 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 7 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_N8J1DP02 14.6734501900302 14.6734501900302 NA -0.738760355225985 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 14 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_NRPG5K4K 14.1078213605756 14.1078213605756 NA 1.28296517133465 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 17 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_NS7GSHB9 14.9437422242818 14.9437422242818 NA 2.33128116493143 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_NYS8TRCB 15.00274424652 15.00274424652 NA 4.01276673391932 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_PEP9NZXN 19.6750746032815 19.6750746032815 NA 10.4619919291854 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 20 4 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_PZVHMSYN 20.4958436287592 20.4958436287592 NA 1.00958585986558 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 15 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_Q3TBCK4V 18.3545292240499 18.3545292240499 NA 5.32343509065531 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 10 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_RHD7XPNP 13.3656823902713 13.3656823902713 NA 0.448136384069937 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 5 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_S0175QKX 18.7053064999535 18.7053064999535 NA -0.585403878343692 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 9 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_S1KK7XRH 14.0916023538222 14.0916023538222 NA 6.14018576873981 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 6 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_S5P8VTN5 22.1442525096995 22.1442525096995 NA 7.29086379569927 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_S7CZY2CH 18.5065021418272 18.5065021418272 NA 3.55041239608526 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 9 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_SDA4RMMG 16.9798442199448 16.9798442199448 NA 1.68432095478583 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 9 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_T4P3J13C 17.1676932695559 17.1676932695559 NA 0.590389972127851 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_T55Y4Z0Y 11.8615422183199 11.8615422183199 NA 2.33128116493143 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 6 0 low [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_TGS109T3 21.4922873201066 21.4922873201066 NA 4.35082092854623 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_TM9MH0RP 15.3206632078975 15.3206632078975 NA 12.5798420136894 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 6 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_TNRHHYNC 11.5886472206873 11.5886472206873 NA -0.738760355225985 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 4 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_W18SF91A 14.0916023538222 14.0916023538222 NA 4.57221774627071 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_WFD0GE5X 21.8485347254597 21.8485347254597 NA -0.585403878343692 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 28 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_WG203ECV 13.7104524319511 13.7104524319511 NA 3.55041239608526 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 5 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_WGK8ZMVA 14.1078213605756 14.1078213605756 NA 5.42788008754551 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 7 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_WRHDP7WF 17.4424684191613 17.4424684191613 NA -0.134112187316855 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 23 3 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_X67GTEM6 18.516545005836 18.516545005836 NA 1.14686982594104 differentially expressed differentially expressed NA no change 15:34488963 15:34490796 ARRIBA other 17 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_Y0PCBNJV 13.2596817874326 13.2596817874326 NA 4.46190912376012 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_Y8D1F5WW 24.8309931288612 24.8309931288612 NA 31.7344644990362 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 13 3 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_YVMEEBKC 17.1210892006187 17.1210892006187 NA 4.89857370846101 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 18 2 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_ZVWE73JZ 17.5545804501996 17.5545804501996 NA 15.9547664988014 differentially expressed differentially expressed NA differentially expressed 15:34488963 15:34490796 ARRIBA other 7 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA -HOOK3--CHRAC1 BS_HZRM07TW 0.605009745091199 1.54142190456139 NA NA no change no change NA NA 8:42930172 8:140514369 ARRIBA in-frame 3 2 high [INTRACHROMOSOMAL[chr8:97.48Mb]],deletion HOOK3 NA CHRAC1 NA CosmicCensus, Oncogene NA NA NA NA -HOOK3--CHRAC1 BS_HZRM07TW 0.605009745091199 1.54142190456139 NA NA no change no change NA NA 8:42925629 8:140514369 ARRIBA in-frame 1 1 high [INTRACHROMOSOMAL[chr8:97.48Mb]],deletion HOOK3 NA CHRAC1 NA CosmicCensus, Oncogene NA NA NA NA -HOOK3--HOOK3 BS_S6S7SK3P 2.96230817990614 2.96230817990614 NA NA differentially expressed differentially expressed NA NA 8:42959299 8:42970309 ARRIBA frameshift 2 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.13Mb]],inversion/3'-3' HOOK3 NA HOOK3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -HOXA-AS2--CCDC126 BS_6JHXXVR7 11.6393544348288 2.84636992183529 NA NA differentially expressed differentially expressed NA NA 7:27113993 7:23642931 ARRIBA other 15 0 high [INTRACHROMOSOMAL[chr7:3.46Mb]],duplication HOXA-AS2 NA CCDC126 NA NA NA NA NA NA -HOXA-AS2--CCDC126 BS_6JHXXVR7 11.6393544348288 2.84636992183529 NA NA differentially expressed differentially expressed NA NA 7:27116343 7:23642931 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr7:3.46Mb]],duplication HOXA-AS2 NA CCDC126 NA NA NA NA NA NA -HOXA3--LRRC61 BS_Z1A875MW -0.261786312551847 0.694004947604725 NA NA no change no change NA NA 7:27140083 7:150325841 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr7:123.17Mb]],inversion HOXA3 NA LRRC61 NA Oncogene, TranscriptionFactor NA NA NA NA -HOXA3--LRRC61 BS_Z1A875MW -0.261786312551847 0.694004947604725 NA NA no change no change NA NA 7:27140083 7:150336718 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:123.17Mb]],inversion HOXA3 NA LRRC61 NA Oncogene, TranscriptionFactor NA NA NA NA -HOXC10--TRHDE BS_Z7890YNR 14.7269494036559 1.45016423767665 NA NA differentially expressed no change NA NA 12:53989469 12:72200183 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr12:18.28Mb]],deletion HOXC10 NA TRHDE NA TranscriptionFactor NA NA NA NA -HOXC10--TRHDE BS_Z7890YNR 14.7269494036559 1.45016423767665 NA NA differentially expressed no change NA NA 12:53986010 12:72286681 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:18.28Mb]],deletion HOXC10 NA TRHDE NA TranscriptionFactor NA NA NA NA -HP1BP3--SCMH1 BS_RCCN63K6 2.53277383611544 0.00158872217887159 NA NA differentially expressed no change NA NA 1:20776597 1:41117010 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:20.24Mb]],duplication HP1BP3 NA SCMH1 NA NA TranscriptionFactor NA NA NA -HPCAL1--AC093459.1(122832)/EXTL2P1(265415) BS_RRAEQZ97 -0.946214224083707 NA NA -0.0502184997595355 no change NA NA no change 2:10303177 2:175577472 ARRIBA other 3 0 medium [],deletion HPCAL1 NA AC093459.1 EXTL2P1 NA NA NA NA NA -HPCAL1--DIRC3 BS_RRAEQZ97 -0.946214224083707 8.5004411090069 NA NA no change differentially expressed NA NA 2:10303177 2:217434116 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr2:206.86Mb]],inversion HPCAL1 NA DIRC3 NA NA Oncogene NA NA NA -HPS5--NXPE3 BS_6JHXXVR7 0.933965231664431 0.00480490221436755 NA NA no change no change NA NA 11:18298792 3:101818528 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr11--chr3]],translocation/5'-5' HPS5 NA NXPE3 NA NA NA NA NA NA -HPSE--CCDC91(2240)/AC022081.1(238224) BS_GW0GKWMS 2.52613534081755 0.806901575703259 NA NA differentially expressed no change NA NA 4:83306203 12:28583751 ARRIBA frameshift 2 0 medium [],translocation HPSE NA CCDC91 AC022081.1 Oncogene NA NA NA NA -HPX--NLRP14 BS_49FQXT2E 0.27407023039495 15.6102558606078 NA NA no change differentially expressed NA NA 11:6431641 11:7038566 ARRIBA frameshift 2 0 high [INTRACHROMOSOMAL[chr11:0.58Mb]],inversion HPX NA NLRP14 NA NA NA NA NA NA -HRAT17(63380)/AC073346.2(16110)--FOXP2 BS_6JHXXVR7 NA 7.66327984615303 NA NA NA differentially expressed NA NA 7:113059014 7:114689783 ARRIBA other 5 3 high [],deletion HRAT17 AC073346.2 FOXP2 NA NA TranscriptionFactor NA NA NA -HRH4--IMPACT BS_3TQSE8HF 0.51416225186341 1.70200515546186 NA NA no change no change NA NA 18:24468951 18:24437955 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr18:0.01Mb],LOCAL_REARRANGEMENT:+:[7094]],duplication HRH4 NA IMPACT NA NA NA NA NA NA -HS3ST5--HS3ST5 BS_ZR96A4FH 0.109885907503369 0.109885907503369 NA NA no change no change NA NA 6:114168351 6:114228778 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.29Mb]],duplication/non-canonical_splicing HS3ST5 NA HS3ST5 NA NA NA NA NA NA -HSD17B12--AC068205.1 BS_NDN62H0S 2.45634841961347 NA NA NA differentially expressed NA NA NA 11:43798427 11:43640952 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:+:[7165]],duplication HSD17B12 NA AC068205.1 NA NA NA NA NA NA -HSD17B12--AC068205.1 BS_NDN62H0S 2.45634841961347 NA NA NA differentially expressed NA NA NA 11:43754121 11:43672991 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:+:[7165]],duplication HSD17B12 NA AC068205.1 NA NA NA NA NA NA -HSD17B4--AC008574.1 BS_1D6PZNKN -0.467187713386848 NA NA NA no change NA NA NA 5:119499553 5:120286174 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr5:0.61Mb]],inversion HSD17B4 NA AC008574.1 NA NA NA NA NA NA -HSD17B4--AC008574.1 BS_1D6PZNKN -0.467187713386848 NA NA NA no change NA NA NA 5:119499553 5:120245633 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr5:0.61Mb]],inversion HSD17B4 NA AC008574.1 NA NA NA NA NA NA -HSP90AA1--NDUFB2 BS_4B0BAVTX -0.854678485608071 -1.2909254723977 NA NA no change no change NA NA 14:102101875 7:140721552 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr14--chr7]],translocation HSP90AA1 NA NDUFB2 NA CosmicCensus, Oncogene NA NA NA NA -HSPA8--P4HB BS_59ZJWJTF 0.818755915604757 4.43459116309942 NA NA no change differentially expressed NA NA 11:123059473 17:81844094 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr11--chr17]],translocation HSPA8 NA P4HB NA NA NA NA NA NA -HSPB11--PTGER3 BS_AZN38B7V -1.31774279719094 -0.720675755071367 NA NA no change no change NA NA 1:53923904 1:70886328 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:16.91Mb]],duplication HSPB11 NA PTGER3 NA NA NA NA NA NA -HSPG2--AC068759.1 BS_W644VEVE 2.69940299427287 NA NA NA differentially expressed NA NA NA 1:21887938 3:173246968 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr1--chr3]],translocation/5'-5' HSPG2 NA AC068759.1 NA Oncogene NA NA NA NA -HTRA1--SH3PXD2A BS_1SVVER1H -0.321746797896133 4.92809522025514 NA NA no change differentially expressed NA NA 10:122462124 10:103661114 ARRIBA in-frame 11 1 high [INTRACHROMOSOMAL[chr10:18.61Mb]],inversion HTRA1 NA SH3PXD2A NA TumorSuppressorGene, Oncogene NA NA NA NA -HTRA1--TANC1 BS_479S95Q6 -0.0225372146611391 4.39847007073968 NA NA no change differentially expressed NA NA 10:122462124 2:159097637 ARRIBA in-frame 42 8 high [INTERCHROMOSOMAL[chr10--chr2]],translocation HTRA1 NA TANC1 NA TumorSuppressorGene, Oncogene NA NA NA NA -HYDIN--AC239809.3 BS_49852ZBH 0.517992586476066 NA NA NA no change NA NA NA 16:71162531 1:148206633 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr16--chr1]],translocation HYDIN NA AC239809.3 NA NA NA NA NA NA -HYDIN--AC239809.3 BS_KPT2WPHW 1.16859299532391 NA NA NA no change NA NA NA 16:71162531 1:148206633 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr16--chr1]],translocation HYDIN NA AC239809.3 NA NA NA NA NA NA -HYDIN--AC239809.3 BS_KPT2WPHW 1.16859299532391 NA NA NA no change NA NA NA 16:71018129 1:148217130 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr16--chr1]],translocation HYDIN NA AC239809.3 NA NA NA NA NA NA -HYDIN--HYDIN BS_CZ3NA7KV 5.5242238363301 5.5242238363301 NA NA differentially expressed differentially expressed NA NA 16:71184865 16:71211998 ARRIBA frameshift 6 0 medium [SELFIE,INTRACHROMOSOMAL[chr16:0.42Mb]],duplication HYDIN NA HYDIN NA NA NA NA NA NA -HYDIN--HYDIN BS_W80TJC27 5.53324413409553 5.53324413409553 NA NA differentially expressed differentially expressed NA NA 16:71018129 16:71020317 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.42Mb]],duplication/non-canonical_splicing HYDIN NA HYDIN NA NA NA NA NA NA -ICA1L--NBEAL1 BS_NB42PWZN 1.59088545807587 6.38562244527021 NA NA no change differentially expressed NA NA 2:202811746 2:203135677 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr2:0.14Mb]],inversion ICA1L NA NBEAL1 NA NA NA NA NA NA -ICA1L--NBEAL1 BS_NB42PWZN 1.59088545807587 6.38562244527021 NA NA no change differentially expressed NA NA 2:202819701 2:203135677 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr2:0.14Mb]],inversion ICA1L NA NBEAL1 NA NA NA NA NA NA -ICA1L--NBEAL1 BS_Z7890YNR 0.505012090323954 6.48612146360253 NA NA no change differentially expressed NA NA 2:202811746 2:203138162 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.14Mb]],inversion ICA1L NA NBEAL1 NA NA NA NA NA NA -ICA1L--NBEAL1 BS_Z7890YNR 0.505012090323954 6.48612146360253 NA NA no change differentially expressed NA NA 2:202811746 2:203135677 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.14Mb]],inversion ICA1L NA NBEAL1 NA NA NA NA NA NA -ICAM1--QTRT1 BS_DHA5FMVW 2.94843913482047 0.0673425418184692 NA NA differentially expressed no change NA NA 19:10271226 19:10701950 ARRIBA frameshift 19 0 medium [INTRACHROMOSOMAL[chr19:0.41Mb]],deletion ICAM1 NA QTRT1 NA Oncogene NA NA NA NA -ICAM1--QTRT1 BS_DHA5FMVW 2.94843913482047 0.0673425418184692 NA NA differentially expressed no change NA NA 19:10271226 19:10707302 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr19:0.41Mb]],deletion ICAM1 NA QTRT1 NA Oncogene NA NA NA NA -ICAM1--QTRT1 BS_DHA5FMVW 2.94843913482047 0.0673425418184692 NA NA differentially expressed no change NA NA 19:10271226 19:10702116 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr19:0.41Mb]],deletion ICAM1 NA QTRT1 NA Oncogene NA NA NA NA -IDNK(15650)/UBQLN1(183)--UBQLN1 BS_YB2RXRHT -1.70537927855292 1.14937429247153 1.14937429247153 NA no change no change no change NA 9:83659780 9:83680037 ARRIBA other 1 0 low [],duplication IDNK UBQLN1 UBQLN1 NA Oncogene NA NA NA NA -IDS--CXorf40A BS_9F09XV62 1.06976519858541 5.04263625937464 NA NA no change differentially expressed NA NA X:149490314 X:149542019 ARRIBA frameshift 36 3 high [CCLE,INTRACHROMOSOMAL[chrX:0.02Mb],LOCAL_INVERSION:-:+:[19259]],inversion IDS NA CXorf40A NA NA NA NA NA NA -IDS--LINC00893 BS_9F09XV62 1.06976519858541 0.695245581141399 NA NA no change no change NA NA X:149490314 X:149534175 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chrX:0.01Mb],LOCAL_REARRANGEMENT:-:[6495]],inversion/5'-5' IDS NA LINC00893 NA NA NA NA NA NA -IDS--LINC00893 BS_9F09XV62 1.06976519858541 0.695245581141399 NA NA no change no change NA NA X:149490314 X:149529593 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chrX:0.01Mb],LOCAL_REARRANGEMENT:-:[6495]],duplication IDS NA LINC00893 NA NA NA NA NA NA -IFNG-AS1--AC090049.1(42624)/LINC01619(36165) BS_Q9V7A95C 62.1820784521969 NA NA NA differentially expressed NA NA NA 12:68006146 12:91948811 ARRIBA other 3 0 high [],deletion IFNG-AS1 NA AC090049.1 LINC01619 NA NA NA NA NA -IFT140--RNU6-679P(78121)/AC106771.1(178265) BS_6JHXXVR7 1.99605009666766 NA NA NA no change NA NA NA 16:1523283 5:12375625 ARRIBA frameshift 13 1 medium [],translocation IFT140 NA RNU6-679P AC106771.1 NA NA NA NA NA -IFT57--SYNPR(16686)/SNTN(19061) BS_FAQQ0GCQ 0.0963450742193961 -2.76979383401435 NA -0.307925566128707 no change differentially expressed NA no change 3:108213931 3:63633607 ARRIBA frameshift 7 0 high [],deletion IFT57 NA SYNPR SNTN NA NA NA NA NA -IFT88--IFT88 BS_EK5PCKY0 3.56280435673238 3.56280435673238 NA NA differentially expressed differentially expressed NA NA 13:20656430 13:20574380 ARRIBA in-frame 9 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr13:0.12Mb]],duplication/non-canonical_splicing IFT88 NA IFT88 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -IGF1R--HNRNPM BS_4B0BAVTX 7.4605950580233 0.678106057090441 NA NA differentially expressed no change NA NA 15:98708107 19:8462529 ARRIBA in-frame 5 1 medium [INTERCHROMOSOMAL[chr15--chr19]],translocation IGF1R NA HNRNPM NA Kinase, Oncogene, Kinase NA NA NA NA -IGF1R--HNRNPM BS_4B0BAVTX 7.4605950580233 0.678106057090441 NA NA differentially expressed no change NA NA 15:98708107 19:8455405 ARRIBA frameshift 3 2 medium [INTERCHROMOSOMAL[chr15--chr19]],translocation IGF1R NA HNRNPM NA Kinase, Oncogene, Kinase NA NA NA NA -IGF2R--AC097512.1 BS_H1ZS5FMZ 6.05552776154401 NA NA NA differentially expressed NA NA NA 6:160090033 4:23043581 ARRIBA frameshift 14 0 medium [INTERCHROMOSOMAL[chr6--chr4]],translocation/5'-5' IGF2R NA AC097512.1 NA TumorSuppressorGene, Oncogene NA NA NA NA -IGF2R--AC097512.1(16706)/AC114912.1(31934) BS_H1ZS5FMZ 6.05552776154401 NA NA NA differentially expressed NA NA NA 6:160090049 4:23073568 ARRIBA frameshift 4 0 medium [],translocation IGF2R NA AC097512.1 AC114912.1 TumorSuppressorGene, Oncogene NA NA NA NA -IGF2R--AL133456.1(31067)/AL121885.2(71919) BS_1HQ76V6D 2.04742490233434 NA NA NA differentially expressed NA NA NA 6:159991323 22:27604640 ARRIBA frameshift 35 5 high [],translocation IGF2R NA AL133456.1 AL121885.2 TumorSuppressorGene, Oncogene NA NA NA NA -IGFBP7--STK32B BS_3W07B2TG 3.96483742686659 0.870801291941799 NA NA differentially expressed no change NA NA 4:57040824 4:5498945 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr4:51.53Mb]],inversion IGFBP7 NA STK32B NA TumorSuppressorGene, Oncogene Kinase NA NA NA -IGHJ5--CASC11 BS_1607397Q NA 117.005274472846 NA NA NA differentially expressed NA NA 14:105863814 8:127733959 ARRIBA other 11 0 high [INTERCHROMOSOMAL[chr14--chr8]],translocation IGHJ5 NA CASC11 NA NA NA NA NA NA -IGHJ6--CASC11 BS_1607397Q NA 117.005274472846 NA NA NA differentially expressed NA NA 14:105863198 8:127733959 ARRIBA other 61 2 medium [INTERCHROMOSOMAL[chr14--chr8]],translocation IGHJ6 NA CASC11 NA NA NA NA NA NA -IGSF1--IGSF1 BS_XBQZYS8G -0.508239794880308 -0.508239794880308 NA NA no change no change NA NA X:131364749 X:131369052 ARRIBA other 2 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.31Mb]],duplication/non-canonical_splicing IGSF1 NA IGSF1 NA NA NA NA NA NA -IGSF11--UPK1B BS_HCP5C912 1.29693888165499 -0.45007457821389 NA NA no change no change NA NA 3:119105144 3:119173718 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:0.03Mb],LOCAL_INVERSION:-:+:[27449]],duplication/5'-5' IGSF11 NA UPK1B NA NA NA NA NA TCGAFusion -IL17RC--ST8SIA4(217736)/RN7SL802P(460828) BS_6JHXXVR7 -0.256986700792537 8.49979281754608 NA -0.0500767480049235 no change differentially expressed NA no change 3:9917734 5:101121002 ARRIBA frameshift 22 2 high [],translocation IL17RC NA ST8SIA4 RN7SL802P NA NA NA NA NA -IL17RC--ST8SIA4(254895)/RN7SL802P(423669) BS_6JHXXVR7 -0.256986700792537 8.49979281754608 NA -0.0500767480049235 no change differentially expressed NA no change 3:9918050 5:101158161 ARRIBA frameshift 2 1 medium [],translocation IL17RC NA ST8SIA4 RN7SL802P NA NA NA NA NA -IL1RAPL1--ADAMTS9 BS_QXKRN6CR 6.92886693908218 -0.0693398563297132 NA NA differentially expressed no change NA NA X:29668504 3:64658791 ARRIBA in-frame 3 1 high [INTERCHROMOSOMAL[chrX--chr3]],translocation IL1RAPL1 NA ADAMTS9 NA NA TumorSuppressorGene NA NA NA -IL1RAPL2--TENM1 BS_M0QYNVK8 0.30303306155375 1.53821414595155 NA NA no change no change NA NA X:105267541 X:124963817 ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chrX:18.61Mb]],inversion IL1RAPL2 NA TENM1 NA NA NA NA NA NA -ILDR2--CD247 BS_G00FHF3Q 3.05520079771948 1.44533590787581 NA NA differentially expressed no change NA NA 1:166917792 1:167440767 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr1:0.46Mb]],duplication ILDR2 NA CD247 NA NA NA NA NA NA -ILDR2--CD247 BS_GE2RVZE6 3.48317660080671 1.12536295381453 NA NA differentially expressed no change NA NA 1:166917792 1:167440767 ARRIBA other 5 2 high [INTRACHROMOSOMAL[chr1:0.46Mb]],duplication ILDR2 NA CD247 NA NA NA NA NA NA -IMMP2L--CNOT4 BS_6JHXXVR7 5.93475055365765 4.51721587708733 NA NA differentially expressed differentially expressed NA NA 7:111487238 7:135398226 ARRIBA in-frame 20 1 high [INTRACHROMOSOMAL[chr7:23.80Mb]],duplication IMMP2L NA CNOT4 NA NA NA NA NA NA -IMMP2L--CNOT4 BS_6JHXXVR7 5.93475055365765 4.51721587708733 NA NA differentially expressed differentially expressed NA NA 7:111392802 7:135398226 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr7:23.80Mb]],duplication IMMP2L NA CNOT4 NA NA NA NA NA NA -IMMP2L--YTHDC2(144438)/AC106789.1(316283) BS_6JHXXVR7 5.93475055365765 0.332208892220991 NA NA differentially expressed no change NA NA 7:110886593 5:113739723 ARRIBA frameshift 9 1 high [],translocation IMMP2L NA YTHDC2 AC106789.1 NA NA NA NA NA -IMPG1--IMPG1 BS_61E80SD6 3.87724022567536 3.87724022567536 NA NA differentially expressed differentially expressed NA NA 6:75947314 6:75951094 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.15Mb]],duplication/non-canonical_splicing IMPG1 NA IMPG1 NA NA NA NA NA NA -INHBA-AS1--ABCB1 BS_K17VQECG 0.593487132921799 1.44406873936898 NA NA no change no change NA NA 7:41777605 7:87566976 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:45.72Mb]],inversion INHBA-AS1 NA ABCB1 NA NA Oncogene NA NA NA -INMT-MINDY4--LINC01422 BS_70FFPA51 NA 2.79496787797483 NA NA NA differentially expressed NA NA 7:30882993 22:26906578 ARRIBA other 6 1 high [INTERCHROMOSOMAL[chr7--chr22]],translocation INMT-MINDY4 NA LINC01422 NA NA NA NA NA NA -INMT-MINDY4--LINC01422 BS_70FFPA51 NA 2.79496787797483 NA NA NA differentially expressed NA NA 7:30882993 22:26920377 ARRIBA other 4 1 high [INTERCHROMOSOMAL[chr7--chr22]],translocation INMT-MINDY4 NA LINC01422 NA NA NA NA NA NA -INO80D--AC007383.2(9227)/NDUFS1(19026) BS_61E80SD6 5.22757531995974 NA NA 1.83952118708081 differentially expressed NA NA no change 2:206017680 2:206095791 ARRIBA frameshift 1 0 low [],duplication INO80D NA AC007383.2 NDUFS1 NA NA NA NA NA -INO80D--AC007383.2(9227)/NDUFS1(19026) BS_M0QYNVK8 4.9699152644575 NA NA 2.20748233845882 differentially expressed NA NA differentially expressed 2:206007284 2:206095791 ARRIBA frameshift 3 0 high [],duplication INO80D NA AC007383.2 NDUFS1 NA NA NA NA NA -INO80D--AC007383.2(9227)/NDUFS1(19026) BS_SFKZSJN1 3.89520588292341 NA NA 1.73761500390144 differentially expressed NA NA no change 2:205999011 2:206095791 ARRIBA other 3 0 medium [],duplication INO80D NA AC007383.2 NDUFS1 NA NA NA NA NA -INO80D--AC007383.2(9227)/NDUFS1(19026) BS_T2QPMZCM 4.64482227714665 NA NA 2.1229606050042 differentially expressed NA NA differentially expressed 2:206046504 2:206095791 ARRIBA frameshift 1 0 low [],duplication INO80D NA AC007383.2 NDUFS1 NA NA NA NA NA -INPP4B--AC105384.1 BS_84XCR9GG 0.531059396962321 NA NA NA no change NA NA NA 4:142846209 4:53899920 ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr4:88.11Mb]],inversion INPP4B NA AC105384.1 NA TumorSuppressorGene NA NA NA NA -INPP4B--AC124017.1 BS_84XCR9GG 0.531059396962321 NA NA NA no change NA NA NA 4:142846209 4:53676075 ARRIBA other 5 3 high [INTRACHROMOSOMAL[chr4:88.29Mb]],inversion INPP4B NA AC124017.1 NA TumorSuppressorGene NA NA NA NA -INPP4B--AC124017.1 BS_84XCR9GG 0.531059396962321 NA NA NA no change NA NA NA 4:142846209 4:53716832 ARRIBA other 3 2 medium [INTRACHROMOSOMAL[chr4:88.29Mb]],inversion INPP4B NA AC124017.1 NA TumorSuppressorGene NA NA NA NA -INPP4B--AC124017.1 BS_84XCR9GG 0.531059396962321 NA NA NA no change NA NA NA 4:142846209 4:53733187 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr4:88.29Mb]],inversion INPP4B NA AC124017.1 NA TumorSuppressorGene NA NA NA NA -INPP4B--AC124017.1(135686)/AC105384.1(27029) BS_84XCR9GG 0.531059396962321 NA NA NA no change NA NA NA 4:142846209 4:53872842 ARRIBA other 12 0 high [],inversion INPP4B NA AC124017.1 AC105384.1 TumorSuppressorGene NA NA NA NA -INPP4B--GAB1 BS_B61168DE 6.24864998162747 2.73220288890374 NA NA differentially expressed differentially expressed NA NA 4:142402938 4:143415477 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr4:0.49Mb]],inversion INPP4B NA GAB1 NA TumorSuppressorGene Oncogene NA NA NA -INPP4B--LNX1 BS_84XCR9GG 0.531059396962321 -1.04397954985749 NA NA no change no change NA NA 4:142835805 4:53584124 ARRIBA other 62 23 high [INTRACHROMOSOMAL[chr4:88.32Mb]],inversion/5'-5' INPP4B NA LNX1 NA TumorSuppressorGene NA NA NA NA -INPP5A--LRRC20 BS_84XCR9GG -1.66710032916192 -0.375800542082798 NA NA no change no change NA NA 10:132538171 10:70324030 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr10:62.16Mb]],inversion INPP5A NA LRRC20 NA NA NA NA NA NA -INPP5A--LRRC20 BS_84XCR9GG -1.66710032916192 -0.375800542082798 NA NA no change no change NA NA 10:132538171 10:70301508 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:62.16Mb]],inversion INPP5A NA LRRC20 NA NA NA NA NA NA -INPP5B--TREML4 BS_RCCN63K6 0.55155596549 39.1170127226861 NA NA no change differentially expressed NA NA 1:37943640 6:41236486 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr1--chr6]],translocation INPP5B NA TREML4 NA NA NA NA NA NA -INPP5E--SEC16A BS_GYA4V1RD -0.249873852504085 -0.368876137835399 NA NA no change no change NA NA 9:136434037 9:136457584 ARRIBA frameshift 8 0 high [ChimerSeq,INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:-:[273]],duplication INPP5E NA SEC16A NA NA NA NA NA TCGAFusion -INPPL1--GRIK4 BS_07ANYSYQ 0.390513395974238 1.51742656624705 NA NA no change no change NA NA 11:72225166 11:120940347 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr11:48.27Mb]],deletion INPPL1 NA GRIK4 NA Oncogene NA NA NA NA -INPPL1--GRIK4 BS_07ANYSYQ 0.390513395974238 1.51742656624705 NA NA no change no change NA NA 11:72223960 11:120940347 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:48.27Mb]],deletion INPPL1 NA GRIK4 NA Oncogene NA NA NA NA -INSC--INSC BS_H3Y8FWHV 24.7500033610017 24.7500033610017 NA NA differentially expressed differentially expressed NA NA 11:15178447 11:15175741 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.13Mb]],duplication/non-canonical_splicing INSC NA INSC NA NA NA NA NA NA -INTS1--PSMG3-AS1(19674)/TFAMP1(5290) BS_9BJARSX3 -0.208036553789355 0.537249341789766 NA -1.07193824990073 no change no change NA no change 7:1493010 7:1609300 ARRIBA frameshift 8 0 high [],duplication INTS1 NA PSMG3-AS1 TFAMP1 NA NA NA NA NA -INTS4--KCTD14 BS_ZJZXDPTP -0.0165852469687793 3.78547720820829 NA NA no change differentially expressed NA NA 11:77994590 11:78017270 ARRIBA frameshift 14 0 medium [FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr11:0.02Mb],LOCAL_REARRANGEMENT:-:[21037]],duplication INTS4 NA KCTD14 NA NA NA NA NA TCGAFusion -INTS4--NDUFC2-KCTD14 BS_ZJZXDPTP -0.0165852469687793 4.93601466913233 NA NA no change differentially expressed NA NA 11:77994590 11:78017270 ARRIBA frameshift 14 0 medium [INTRACHROMOSOMAL[chr11:0.02Mb],LOCAL_REARRANGEMENT:-:[22293]],duplication INTS4 NA NDUFC2-KCTD14 NA NA NA NA NA NA -INTS6--AL138963.3 BS_1TWCV047 4.1363528340921 NA NA NA differentially expressed NA NA NA 13:51376048 13:45340056 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr13:6.01Mb]],inversion INTS6 NA AL138963.3 NA TumorSuppressorGene, Oncogene NA NA NA NA -INTS6--TPT1 BS_1TWCV047 4.1363528340921 -1.18695631247714 NA NA differentially expressed no change NA NA 13:51376048 13:45340056 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr13:6.01Mb]],inversion/5'-5' INTS6 NA TPT1 NA TumorSuppressorGene, Oncogene NA NA NA NA -IP6K1--CACNA2D2 BS_KZPR01BD 0.755782925466582 0.566887682749176 NA NA no change no change NA NA 3:49786354 3:50519888 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr3:0.58Mb]],duplication IP6K1 NA CACNA2D2 NA NA NA NA NA NA -IP6K1--CACNA2D2(15644)/C3orf18(38137) BS_KZPR01BD 0.755782925466582 0.566887682749176 NA 0.710842063318245 no change no change NA no change 3:49786354 3:50519888 ARRIBA other 13 0 high [],duplication IP6K1 NA CACNA2D2 C3orf18 NA NA NA NA NA -IP6K2--PRICKLE2 BS_FAQQ0GCQ -0.678609679095208 2.2423793339573 NA NA no change differentially expressed NA NA 3:48695249 3:64180458 ARRIBA frameshift 4 0 low [INTRACHROMOSOMAL[chr3:15.35Mb]],inversion/5'-5' IP6K2 NA PRICKLE2 NA NA NA NA NA NA -IPMK--PHYHIPL BS_K7MVS0Z7 2.09580801017572 2.85552425016305 NA NA differentially expressed differentially expressed NA NA 10:58267422 10:59234304 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr10:0.91Mb]],inversion IPMK NA PHYHIPL NA NA NA NA NA NA -IPO11--OR4A6P(218016)/TRIM48(318350) BS_B9V8RGTA 3.5300347343144 -0.0467500233313125 NA 0.793458214684501 differentially expressed no change NA no change 5:62561257 11:54943832 ARRIBA frameshift 4 0 high [],translocation IPO11 NA OR4A6P TRIM48 NA NA NA NA NA -IPO7--HIPK3 BS_49FQXT2E 2.46034912136839 4.10378842460816 NA NA differentially expressed differentially expressed NA NA 11:9384847 11:33286413 ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr11:23.81Mb]],deletion IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA -IPO7--HIPK3 BS_49FQXT2E 2.46034912136839 4.10378842460816 NA NA differentially expressed differentially expressed NA NA 11:9392320 11:33286413 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr11:23.81Mb]],deletion IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA -IQCB1--FAM208A BS_FAQQ0GCQ -0.802591966334544 1.34918346868485 NA NA no change no change NA NA 3:121826051 3:56673725 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr3:65.09Mb]],deletion IQCB1 NA FAM208A NA NA NA NA NA NA -IQCH--IQCH BS_34201DKZ 7.82919758369792 7.82919758369792 NA NA differentially expressed differentially expressed NA NA 15:67421577 15:67372111 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.25Mb]],duplication/non-canonical_splicing IQCH NA IQCH NA NA NA NA NA NA -IQCJ-SCHIP1--NAALADL2 BS_MKM0EEN1 -1.5336071450717 7.91185034675778 NA NA no change differentially expressed NA NA 3:159765099 3:174821748 ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr3:14.54Mb]],inversion/3'-3' IQCJ-SCHIP1 NA NAALADL2 NA NA NA NA NA NA -IQCK--AL512594.1 BS_RCCN63K6 1.69561079435127 NA NA NA no change NA NA NA 16:19735450 9:73648860 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr16--chr9]],translocation IQCK NA AL512594.1 NA NA NA NA NA NA -IQGAP1--ZNF774 BS_68BW2163 -0.940644770261818 3.22802613715599 NA NA no change differentially expressed NA NA 15:90390873 15:90354642 ARRIBA frameshift 3 0 high [CCLE,ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[19072]],duplication IQGAP1 NA ZNF774 NA NA TranscriptionFactor NA NA TCGAFusion -IQSEC1--NECTIN3-AS1 BS_FAQQ0GCQ 0.0976076341678257 NA NA NA no change NA NA NA 3:12967387 3:110893830 ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr3:97.82Mb]],duplication IQSEC1 NA NECTIN3-AS1 NA NA NA NA NA NA -IQSEC1--NECTIN3-AS1 BS_FAQQ0GCQ 0.0976076341678257 NA NA NA no change NA NA NA 3:13072992 3:110893830 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr3:97.82Mb]],duplication IQSEC1 NA NECTIN3-AS1 NA NA NA NA NA NA -IQSEC1(209594)/NUP210(33524)--NRG3 BS_W4DB5RP1 0.29437621394129 1.66967919252408 2.4170313792357 NA no change no change differentially expressed NA 3:13282711 10:82358739 ARRIBA other 4 0 medium [],translocation IQSEC1 NUP210 NRG3 NA NA NA NA NA NA -IQSEC2--AC092546.1(21159)/AC006296.2(119151) BS_RCCN63K6 -0.760202540591786 NA NA -0.137288661479996 no change NA NA no change X:53291895 4:14263972 ARRIBA frameshift 2 0 medium [],translocation IQSEC2 NA AC092546.1 AC006296.2 NA NA NA NA NA -IQSEC3--AL035696.3 BS_55JW3HFM -1.36560506243276 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_6MY8W3H0 -0.0755026018222166 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_AMQGM1V9 -0.524757961682642 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_CREQ97QC -0.0382328417660067 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_CW9QV8AG 0.0296989584882458 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_DVCQ8XDZ -0.0312175258592497 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_HCP5C912 -0.222347338822143 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_KN92S7YQ -1.82663640707663 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_KPT2WPHW -0.0728269053522 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_KQ6ZW085 -0.792375333739528 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_M86ECPHK -1.62621100936843 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_NVKGSMXS -0.397558957253706 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_PQ7CQFYR 0.141599330132301 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_QC3XCE6X -0.116808255344879 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_V9HVBBDW -0.502825041037585 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_VA5T4KAA -0.160905935757801 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_VPMKHW9X 0.0032249321951786 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_XJTW0P8P -0.633099057118671 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 8 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_ZH1FBX50 0.21359357498607 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--AL035696.3 BS_ZZPBANDD -0.578830556241179 NA NA NA no change NA NA NA 12:67436 6:184140 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA -IQSEC3--CLIC4(13555)/RUNX3(41632) BS_JT82QGXF -2.32907292713952 1.58841839061255 NA 1.12979821212234 differentially expressed no change NA no change 12:178248 1:24857879 ARRIBA other 2 0 low [],translocation IQSEC3 NA CLIC4 RUNX3 NA Oncogene NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA -IRAK3--AC108721.1 BS_7327SDAQ 2.00142867098913 NA NA NA differentially expressed NA NA NA 12:66211597 12:59373487 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr12:6.78Mb]],duplication/5'-5' IRAK3 NA AC108721.1 NA Kinase, Kinase NA NA NA NA -IRF2--LINC01093 BS_V3Z3DB4N 1.70119764397524 7.88015014586814 NA NA no change differentially expressed NA NA 4:184474379 4:184894140 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr4:0.42Mb]],duplication IRF2 NA LINC01093 NA TranscriptionFactor NA NA NA NA -IRS1--CCDC77 BS_81SP2HX4 8.99005371612948 0.862743746476968 NA NA differentially expressed no change NA NA 2:226794989 12:411747 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr2--chr12]],translocation IRS1 NA CCDC77 NA NA NA NA NA NA -IRS2--MYO16 BS_23QW0BBA 13.4576092774942 17.0127688625013 NA NA differentially expressed differentially expressed NA NA 13:109782042 13:108665886 ARRIBA in-frame 7 5 medium [INTRACHROMOSOMAL[chr13:0.54Mb]],inversion IRS2 NA MYO16 NA NA NA NA NA NA -IRS2--MYO16 BS_23QW0BBA 13.4576092774942 17.0127688625013 NA NA differentially expressed differentially expressed NA NA 13:109782042 13:108910003 ARRIBA in-frame 1 4 medium [INTRACHROMOSOMAL[chr13:0.54Mb]],inversion IRS2 NA MYO16 NA NA NA NA NA NA -ITCH--TANC2 BS_TRKH2SPE 1.87669012567379 2.97543436033753 NA NA no change differentially expressed NA NA 20:34363491 17:63267748 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr20--chr17]],translocation ITCH NA TANC2 NA NA NA NA NA NA -ITFG1--ABCC11 BS_THSPSG2Z -0.659972296463098 5.28737576534118 NA NA no change differentially expressed NA NA 16:47428804 16:48167366 ARRIBA frameshift 27 1 high [INTRACHROMOSOMAL[chr16:0.70Mb]],duplication ITFG1 NA ABCC11 NA NA NA NA NA NA -ITFG1--ABCC11 BS_THSPSG2Z -0.659972296463098 5.28737576534118 NA NA no change differentially expressed NA NA 16:47428804 16:48167660 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr16:0.70Mb]],duplication ITFG1 NA ABCC11 NA NA NA NA NA NA -ITGA10--PEX11B BS_8ZD6J47V 4.20570865447378 -1.09261150521537 NA NA differentially expressed no change NA NA 1:145904052 1:145912566 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:-:[1161]],duplication ITGA10 NA PEX11B NA NA NA NA NA TCGAFusion -ITGA10--PEX11B BS_8ZD6J47V 4.20570865447378 -1.09261150521537 NA NA differentially expressed no change NA NA 1:145906733 1:145912566 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:-:[1161]],duplication ITGA10 NA PEX11B NA NA NA NA NA TCGAFusion -ITGA10--PEX11B BS_8ZD6J47V 4.20570865447378 -1.09261150521537 NA NA differentially expressed no change NA NA 1:145907354 1:145912566 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:-:[1161]],duplication ITGA10 NA PEX11B NA NA NA NA NA TCGAFusion -ITGA9--CLASP2 BS_MKM0EEN1 6.06042640918812 0.990152027783002 NA NA differentially expressed no change NA NA 3:37542585 3:33696933 ARRIBA in-frame 25 2 high [INTRACHROMOSOMAL[chr3:3.73Mb]],inversion ITGA9 NA CLASP2 NA Oncogene NA NA NA NA -ITGA9--GOLGA4 BS_J1AB8PMA 3.70821982650139 1.82581527945517 NA NA differentially expressed no change NA NA 3:37481607 3:37298833 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr3:0.09Mb],LOCAL_REARRANGEMENT:+:[85364]],duplication ITGA9 NA GOLGA4 NA Oncogene NA NA NA NA -ITGB1--KIF14 BS_QWTE1CWR 2.52474228248687 14.0965713532816 NA NA differentially expressed differentially expressed NA NA 10:32958145 1:200581294 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr10--chr1]],translocation ITGB1 NA KIF14 NA TumorSuppressorGene Oncogene NA NA NA -ITGB1--KIF14 BS_QWTE1CWR 2.52474228248687 14.0965713532816 NA NA differentially expressed differentially expressed NA NA 10:32957759 1:200581294 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr10--chr1]],translocation ITGB1 NA KIF14 NA TumorSuppressorGene Oncogene NA NA NA -ITGB1--KIF14 BS_WKESC3XN 1.90161339111095 19.1846435501321 NA NA no change differentially expressed NA NA 10:32953593 1:200581294 ARRIBA other 12 2 high [INTERCHROMOSOMAL[chr10--chr1]],translocation ITGB1 NA KIF14 NA TumorSuppressorGene Oncogene NA NA NA -ITGB1--KIF14 BS_WKESC3XN 1.90161339111095 19.1846435501321 NA NA no change differentially expressed NA NA 10:32958145 1:200581294 ARRIBA other 13 1 high [INTERCHROMOSOMAL[chr10--chr1]],translocation ITGB1 NA KIF14 NA TumorSuppressorGene Oncogene NA NA NA -ITGB5--CACNA1D BS_PN2CE34A 7.20194086169277 1.93627208386904 NA NA differentially expressed no change NA NA 3:124796388 3:53702641 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr3:70.95Mb]],inversion ITGB5 NA CACNA1D NA NA CosmicCensus NA NA NA -ITPR2--LINC02472(25020)/AC092593.2(160918) BS_MN5XVP5A 4.15395574802113 NA NA NA differentially expressed NA NA NA 12:26832690 4:29246182 ARRIBA frameshift 2 1 high [],translocation ITPR2 NA LINC02472 AC092593.2 NA NA NA NA NA -ITPR3--GRM4 BS_YB07VF1X 4.67152942848712 -1.02747128202023 NA NA differentially expressed no change NA NA 6:33640554 6:34133859 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr6:0.32Mb]],inversion ITPR3 NA GRM4 NA NA NA NA NA NA -ITSN1--SLC12A7 BS_B1C6GZ84 0.789246846444124 1.66275841277275 NA NA no change no change NA NA 21:33642713 5:1094248 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr21--chr5]],translocation ITSN1 NA SLC12A7 NA NA NA NA NA NA -ITSN2--ITSN2 BS_FAVRBEW7 0.804220744563191 0.804220744563191 NA NA no change no change NA NA 2:24246129 2:24303862 ARRIBA in-frame 7 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.16Mb]],duplication/non-canonical_splicing ITSN2 NA ITSN2 NA NA NA NA NA NA -JAG2--TMOD2 BS_TZ5D0A7R 1.76229400690467 -3.00436286550644 NA NA no change differentially expressed NA NA 14:105155562 15:51809529 ARRIBA frameshift 68 11 high [INTERCHROMOSOMAL[chr14--chr15]],translocation/5'-5' JAG2 NA TMOD2 NA Oncogene NA NA NA NA -JAK2--JAK2 BS_1AYRM596 2.4191121523732 2.4191121523732 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_2SFTWNVE 2.58468951754131 2.58468951754131 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 20 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_3MYEMXPQ 4.88943909609102 4.88943909609102 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 26 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_3NNQ6PSB 3.01207993880509 3.01207993880509 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 27 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_4CP4T22V 2.1995285804025 2.1995285804025 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_4PH1MBGR 1.64551180765513 1.64551180765513 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_4W68NV3M 1.8097109735987 1.8097109735987 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_5PJCHF6V 2.36500884534332 2.36500884534332 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 14 4 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_61E80SD6 4.04401328053356 4.04401328053356 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 42 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_7C40TRCY 0.993954214120359 0.993954214120359 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_8F9BDWY4 1.42760569239949 1.42760569239949 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_A14Z8BBK 2.28880682628116 2.28880682628116 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_AM70R8RG 0.701024288148947 0.701024288148947 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_AMQGM1V9 1.50846115183583 1.50846115183583 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_BSV07M7Z 0.794107564048361 0.794107564048361 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_CW9QV8AG 0.848459690572796 0.848459690572796 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_ERWT0ZWE 1.35915729426611 1.35915729426611 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_G00FHF3Q 1.33927862340786 1.33927862340786 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_GE2RVZE6 1.2272588074024 1.2272588074024 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 15 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_H4B5Y6S0 3.69335182696567 3.69335182696567 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 24 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_HD4EJYE3 1.99992723267244 1.99992723267244 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_HF3RNN2T 2.37863632941891 2.37863632941891 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_HKZENFDA 3.25379140507938 3.25379140507938 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 14 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_HTEPAKCM 2.45899199059467 2.45899199059467 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_J8G4SH4Z 2.52095818308961 2.52095818308961 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_JT82QGXF 0.134267690754607 0.134267690754607 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_K5802F84 0.953997330918629 0.953997330918629 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_K74PZET7 2.10344773438264 2.10344773438264 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_KN92S7YQ 2.37523588107998 2.37523588107998 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 12 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_KVNGNETA 2.89388397490868 2.89388397490868 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 12 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_M4NVX721 0.751066482979368 0.751066482979368 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_NFRXNAFE 1.05557636380963 1.05557636380963 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_NKRYMHEP 1.81808333496779 1.81808333496779 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 12 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_QEYPFYHD 3.23156044514416 3.23156044514416 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 139 15 high [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_QPPPGYP4 1.094072843816 1.094072843816 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 5 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_QRDT19KS 1.50846115183583 1.50846115183583 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_TDEFAPNH 1.52248252954992 1.52248252954992 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_VNE0ZPBS 0.993954214120359 0.993954214120359 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_W97QQYKQ 2.11096079536158 2.11096079536158 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 4 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_WH5HDE0A 3.11240462097496 3.11240462097496 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 33 4 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_XJTW0P8P 1.50846115183583 1.50846115183583 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_Z45HD492 0.630670806764628 0.630670806764628 NA NA no change no change NA NA 9:5072626 9:5021963 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAK2--JAK2 BS_Z7PKVY9J 3.76965142873203 3.76965142873203 NA NA differentially expressed differentially expressed NA NA 9:5072626 9:5021963 ARRIBA frameshift 38 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -JAKMIP1--JAKMIP1 BS_0T17SY47 -0.709473057211818 -0.709473057211818 NA NA no change no change NA NA 4:6035904 4:6042227 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.17Mb]],duplication/non-canonical_splicing JAKMIP1 NA JAKMIP1 NA Oncogene Oncogene NA NA NA -JAKMIP1--JAKMIP1 BS_39CGACC7 -0.849399393779297 -0.849399393779297 NA NA no change no change NA NA 4:6035904 4:6042227 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.17Mb]],duplication/non-canonical_splicing JAKMIP1 NA JAKMIP1 NA Oncogene Oncogene NA NA NA -JAKMIP1--JAKMIP1 BS_3MS8WVNR -0.823170257467398 -0.823170257467398 NA NA no change no change NA NA 4:6078939 4:6081755 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.17Mb]],duplication/non-canonical_splicing JAKMIP1 NA JAKMIP1 NA Oncogene Oncogene NA NA NA -JAZF1--DPY19L2P3 BS_HX0S30NE 0.822145985341483 1.18863203811276 NA NA no change no change NA NA 7:28180463 7:29742147 ARRIBA frameshift 24 3 high [INTRACHROMOSOMAL[chr7:1.47Mb]],inversion JAZF1 NA DPY19L2P3 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -JAZF1--DPY19L2P3 BS_YB2RXRHT 1.23702791157207 -0.0880387892640659 NA NA no change no change NA NA 7:28180463 7:29742147 ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chr7:1.47Mb]],inversion JAZF1 NA DPY19L2P3 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -JAZF1--SDK1 BS_7327SDAQ 1.01624839256815 2.55057079153607 NA NA no change differentially expressed NA NA 7:27991909 7:3950923 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:23.56Mb]],inversion JAZF1 NA SDK1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -JMY--JMY(8004)/HOMER1(37417) BS_AJ6X83G5 2.03080880288718 2.03080880288718 NA 4.43109157699408 differentially expressed differentially expressed NA differentially expressed 5:79313336 5:79335219 ARRIBA other 1 1 medium [],duplication JMY NA JMY HOMER1 NA NA NA NA NA -KANK1--NTRK2 BS_BKQZ550R 2.49113745904729 0.679926085371086 NA NA differentially expressed no change NA NA 9:713464 9:84741892 ARRIBA in-frame 85 15 high [INTRACHROMOSOMAL[chr9:83.92Mb]],deletion KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA -KANK1--NTRK2 BS_BKQZ550R 2.49113745904729 0.679926085371086 NA NA differentially expressed no change NA NA 9:713464 9:84744973 ARRIBA in-frame 7 6 medium [INTRACHROMOSOMAL[chr9:83.92Mb]],deletion KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA -KANK1--NTRK2 BS_BKQZ550R 2.49113745904729 0.679926085371086 NA NA differentially expressed no change NA NA 9:677009 9:84744973 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:83.92Mb]],deletion KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA -KANK1--NTRK2 BS_BKQZ550R 2.49113745904729 0.679926085371086 NA NA differentially expressed no change NA NA 9:677009 9:84741892 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:83.92Mb]],deletion KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA -KANK1--NTRK2 BS_YEQVW4ND 1.80047148360201 0.779581255480132 NA NA no change no change NA NA 9:713464 9:84741892 ARRIBA in-frame 23 0 high [INTRACHROMOSOMAL[chr9:83.92Mb]],deletion KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA -KANK1--NTRK2 BS_YEQVW4ND 1.80047148360201 0.779581255480132 NA NA no change no change NA NA 9:713464 9:84744973 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr9:83.92Mb]],deletion KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA -KANSL1--AC126544.2(4469)/MAPK8IP1P2(3031) BS_Y8D1F5WW 3.27302046216519 NA NA NA differentially expressed NA NA NA 17:46170855 17:45597838 ARRIBA frameshift 2 0 low [],deletion KANSL1 NA AC126544.2 MAPK8IP1P2 NA NA NA NA NA -KANSL1--KANSL1 BS_8ZD6J47V 1.76038758909249 1.76038758909249 NA NA no change no change NA NA 17:46066537 17:46172232 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing KANSL1 NA KANSL1 NA NA NA NA NA NA -KANSL1--KANSL1 BS_FYRDYBMZ 1.79951873631135 1.79951873631135 NA NA no change no change NA NA 17:46152904 17:46172232 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing KANSL1 NA KANSL1 NA NA NA NA NA NA -KANSL1--KANSL1 BS_QTSXW7DA 1.63413819889892 1.63413819889892 NA NA no change no change NA NA 17:46152904 17:46172232 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing KANSL1 NA KANSL1 NA NA NA NA NA NA -KANSL1--KANSL1 BS_WRHDP7WF 1.1244202034736 1.1244202034736 NA NA no change no change NA NA 17:46152904 17:46172232 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing KANSL1 NA KANSL1 NA NA NA NA NA NA -KANSL1--KANSL1 BS_X16PENSA 0.95261305395339 0.95261305395339 NA NA no change no change NA NA 17:46152904 17:46172232 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing KANSL1 NA KANSL1 NA NA NA NA NA NA -KANSL1--KANSL1(11935)/MAPK8IP1P1(6282) BS_GNV89A5P 3.32655815751903 3.32655815751903 NA NA differentially expressed differentially expressed NA NA 17:46152904 17:46237324 ARRIBA other 1 0 low [],inversion KANSL1 NA KANSL1 MAPK8IP1P1 NA NA NA NA NA -KANSL1--LRRC37A3 BS_SKGJ5SY9 3.44987026436207 1.63729262380284 NA NA differentially expressed no change NA NA 17:46152904 17:64898459 ARRIBA frameshift 3 0 medium [GTEx,INTRACHROMOSOMAL[chr17:18.63Mb]],duplication KANSL1 NA LRRC37A3 NA NA NA NA NA NA -KANSL1--MAPK8IP1P1(2382)/AC005829.2(12125) BS_N6NE6B3W 2.33913951452232 NA NA NA differentially expressed NA NA NA 17:46170855 17:46247426 ARRIBA frameshift 1 0 low [],inversion KANSL1 NA MAPK8IP1P1 AC005829.2 NA NA NA NA NA -KANSL1L--ACADL BS_9NJHQE9F 5.60023729749264 11.4860166088914 NA NA differentially expressed differentially expressed NA NA 2:210098086 2:210220811 ARRIBA in-frame 1 2 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]],duplication KANSL1L NA ACADL NA NA NA NA NA NA -KANSL1L--ACADL BS_9NJHQE9F 5.60023729749264 11.4860166088914 NA NA differentially expressed differentially expressed NA NA 2:210104104 2:210220802 ARRIBA frameshift 1 1 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]],duplication KANSL1L NA ACADL NA NA NA NA NA NA -KANSL1L--ACADL BS_H4B5Y6S0 3.71906074418234 0.416604938262104 NA NA differentially expressed no change NA NA 2:210104104 2:210220802 ARRIBA frameshift 2 2 high [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]],duplication KANSL1L NA ACADL NA NA NA NA NA NA -KANSL1L--ACADL BS_M86ECPHK 4.65073806884468 11.9222510654805 NA NA differentially expressed differentially expressed NA NA 2:210098086 2:210220811 ARRIBA in-frame 1 8 high [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]],duplication KANSL1L NA ACADL NA NA NA NA NA NA -KANSL1L--ACADL BS_M86ECPHK 4.65073806884468 11.9222510654805 NA NA differentially expressed differentially expressed NA NA 2:210104104 2:210220802 ARRIBA frameshift 2 4 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]],duplication KANSL1L NA ACADL NA NA NA NA NA NA -KANSL1L--ACADL BS_M86ECPHK 4.65073806884468 11.9222510654805 NA NA differentially expressed differentially expressed NA NA 2:210153495 2:210205796 ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]],duplication KANSL1L NA ACADL NA NA NA NA NA NA -KANSL1L--ACADL BS_VA5T4KAA 3.83552236397126 8.74658852556894 NA NA differentially expressed differentially expressed NA NA 2:210104104 2:210220802 ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]],duplication KANSL1L NA ACADL NA NA NA NA NA NA -KAT2B--LINC02008 BS_FAQQ0GCQ 1.81483573047816 NA NA NA no change NA NA NA 3:20072459 3:82297040 ARRIBA frameshift 13 2 high [INTRACHROMOSOMAL[chr3:61.83Mb]],inversion/3'-3' KAT2B NA LINC02008 NA NA NA NA NA NA -KAT6A--AC016868.1(18590)/GOLGA7(31387) BS_N6N147BY 5.49687306901801 NA NA -1.58872367991778 differentially expressed NA NA no change 8:42048378 8:41459009 ARRIBA frameshift 26 11 high [],deletion KAT6A NA AC016868.1 GOLGA7 CosmicCensus, Oncogene NA NA NA NA -KBTBD11-OT1--ARHGEF10 BS_G63HYD6N -1.3556306704153 -0.509511957935737 NA NA no change no change NA NA 8:1894572 8:1882635 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA -KBTBD11-OT1--ARHGEF10 BS_G63HYD6N -1.3556306704153 -0.509511957935737 NA NA no change no change NA NA 8:1864436 8:1843353 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA -KBTBD11-OT1--ARHGEF10 BS_G63HYD6N -1.3556306704153 -0.509511957935737 NA NA no change no change NA NA 8:1894572 8:1876571 ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA -KBTBD11-OT1--ARHGEF10 BS_G63HYD6N -1.3556306704153 -0.509511957935737 NA NA no change no change NA NA 8:1909470 8:1876571 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA -KBTBD11-OT1--ARHGEF10 BS_G63HYD6N -1.3556306704153 -0.509511957935737 NA NA no change no change NA NA 8:1898525 8:1880048 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA -KBTBD11-OT1--ARHGEF10 BS_G63HYD6N -1.3556306704153 -0.509511957935737 NA NA no change no change NA NA 8:1903451 8:1843353 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA -KC6--KC6 BS_KVNGNETA 31.4551378454536 31.4551378454536 NA NA differentially expressed differentially expressed NA NA 18:41516420 18:41525526 ARRIBA other 17 2 low [SELFIE,INTRACHROMOSOMAL[chr18:0.17Mb]],duplication/non-canonical_splicing KC6 NA KC6 NA NA NA NA NA NA -KCNA1--PIK3C2G BS_H4B5Y6S0 0.764878382646851 3.42863886271241 NA NA no change differentially expressed NA NA 12:4911540 12:18417466 ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr12:13.33Mb]],inversion/3'-3' KCNA1 NA PIK3C2G NA NA Kinase NA NA NA -KCNA1--RERGL BS_H4B5Y6S0 0.764878382646851 -0.399075637234555 NA NA no change no change NA NA 12:4910472 12:18088956 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr12:13.16Mb]],inversion KCNA1 NA RERGL NA NA NA NA NA NA -KCNH1--AL590132.1 BS_044XZ8ST 2.70715082215773 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_044XZ8ST 2.70715082215773 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_044XZ8ST 2.70715082215773 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_044XZ8ST 2.70715082215773 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_044XZ8ST 2.70715082215773 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_044XZ8ST 2.70715082215773 NA NA NA differentially expressed NA NA NA 1:211018783 1:211082898 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_044XZ8ST 2.70715082215773 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_044XZ8ST 2.70715082215773 NA NA NA differentially expressed NA NA NA 1:211103496 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_044XZ8ST 2.70715082215773 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_044XZ8ST 2.70715082215773 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_044XZ8ST 2.70715082215773 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_07ANYSYQ 1.73628719321685 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_07ANYSYQ 1.73628719321685 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_07ANYSYQ 1.73628719321685 NA NA NA no change NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_07ANYSYQ 1.73628719321685 NA NA NA no change NA NA NA 1:211103496 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_07ANYSYQ 1.73628719321685 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_0T17SY47 2.25104172243631 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 11 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_0T17SY47 2.25104172243631 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_0T17SY47 2.25104172243631 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_0T17SY47 2.25104172243631 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_0T17SY47 2.25104172243631 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 6 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_0T17SY47 2.25104172243631 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_0T17SY47 2.25104172243631 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_0T17SY47 2.25104172243631 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_0T17SY47 2.25104172243631 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_0T17SY47 2.25104172243631 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1G3WYEN3 1.57401575148041 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1G3WYEN3 1.57401575148041 NA NA NA no change NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1G3WYEN3 1.57401575148041 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1G3WYEN3 1.57401575148041 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1G3WYEN3 1.57401575148041 NA NA NA no change NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1G3WYEN3 1.57401575148041 NA NA NA no change NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1G3WYEN3 1.57401575148041 NA NA NA no change NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1T19NFJ8 2.31351461601261 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 35 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1T19NFJ8 2.31351461601261 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1T19NFJ8 2.31351461601261 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1T19NFJ8 2.31351461601261 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 22 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1T19NFJ8 2.31351461601261 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1T19NFJ8 2.31351461601261 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1T19NFJ8 2.31351461601261 NA NA NA differentially expressed NA NA NA 1:211018783 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1T19NFJ8 2.31351461601261 NA NA NA differentially expressed NA NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1T19NFJ8 2.31351461601261 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_1T19NFJ8 2.31351461601261 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_258RRGDM 1.85236087834876 NA NA NA no change NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_258RRGDM 1.85236087834876 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_258RRGDM 1.85236087834876 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_258RRGDM 1.85236087834876 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_258RRGDM 1.85236087834876 NA NA NA no change NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_258RRGDM 1.85236087834876 NA NA NA no change NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_258RRGDM 1.85236087834876 NA NA NA no change NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_273HKCT4 1.46666901488323 NA NA NA no change NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_273HKCT4 1.46666901488323 NA NA NA no change NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_273HKCT4 1.46666901488323 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_273HKCT4 1.46666901488323 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_273HKCT4 1.46666901488323 NA NA NA no change NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_273HKCT4 1.46666901488323 NA NA NA no change NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_273HKCT4 1.46666901488323 NA NA NA no change NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_273HKCT4 1.46666901488323 NA NA NA no change NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_2XD3MNKD 2.58159713075994 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 11 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_2XD3MNKD 2.58159713075994 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 11 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_2XD3MNKD 2.58159713075994 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_2XD3MNKD 2.58159713075994 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_2XD3MNKD 2.58159713075994 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_2XD3MNKD 2.58159713075994 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_2XD3MNKD 2.58159713075994 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_2XD3MNKD 2.58159713075994 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_2XD3MNKD 2.58159713075994 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_398KYV92 3.63653654788377 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 24 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_398KYV92 3.63653654788377 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 16 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_398KYV92 3.63653654788377 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_398KYV92 3.63653654788377 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_398KYV92 3.63653654788377 NA NA NA differentially expressed NA NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_398KYV92 3.63653654788377 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_398KYV92 3.63653654788377 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_398KYV92 3.63653654788377 NA NA NA differentially expressed NA NA NA 1:211018783 1:211082898 ARRIBA frameshift 4 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_398KYV92 3.63653654788377 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_398KYV92 3.63653654788377 NA NA NA differentially expressed NA NA NA 1:210775348 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_398KYV92 3.63653654788377 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_398KYV92 3.63653654788377 NA NA NA differentially expressed NA NA NA 1:211103496 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_39CGACC7 1.72212556182583 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 13 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_39CGACC7 1.72212556182583 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_39CGACC7 1.72212556182583 NA NA NA no change NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_39CGACC7 1.72212556182583 NA NA NA no change NA NA NA 1:211103496 1:211107377 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_39CGACC7 1.72212556182583 NA NA NA no change NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_39CGACC7 1.72212556182583 NA NA NA no change NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_39CGACC7 1.72212556182583 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 4 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_39CGACC7 1.72212556182583 NA NA NA no change NA NA NA 1:210775348 1:211019256 ARRIBA in-frame 1 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_39CGACC7 1.72212556182583 NA NA NA no change NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_39CGACC7 1.72212556182583 NA NA NA no change NA NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_3MS8WVNR 0.875393308752539 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_3MS8WVNR 0.875393308752539 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 10 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_3MS8WVNR 0.875393308752539 NA NA NA no change NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_3MS8WVNR 0.875393308752539 NA NA NA no change NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_3MS8WVNR 0.875393308752539 NA NA NA no change NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_3MS8WVNR 0.875393308752539 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_3MS8WVNR 0.875393308752539 NA NA NA no change NA NA NA 1:211103496 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_3P20Q2C3 2.155859836416 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_3P20Q2C3 2.155859836416 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_3P20Q2C3 2.155859836416 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_3P20Q2C3 2.155859836416 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_3P20Q2C3 2.155859836416 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_3P20Q2C3 2.155859836416 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_3P20Q2C3 2.155859836416 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_3P20Q2C3 2.155859836416 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_3P20Q2C3 2.155859836416 NA NA NA differentially expressed NA NA NA 1:210919642 1:211019258 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_5K3R0F5D 1.45845659013808 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_5K3R0F5D 1.45845659013808 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_5K3R0F5D 1.45845659013808 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_5K3R0F5D 1.45845659013808 NA NA NA no change NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_5K3R0F5D 1.45845659013808 NA NA NA no change NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_5K3R0F5D 1.45845659013808 NA NA NA no change NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_5K3R0F5D 1.45845659013808 NA NA NA no change NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_60K3EQ9S 1.13957961623969 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_60K3EQ9S 1.13957961623969 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_67Z63A2K 1.33936226198201 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_67Z63A2K 1.33936226198201 NA NA NA no change NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_680K119G 1.22123530658558 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_680K119G 1.22123530658558 NA NA NA no change NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_680K119G 1.22123530658558 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_680K119G 1.22123530658558 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_680K119G 1.22123530658558 NA NA NA no change NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_680K119G 1.22123530658558 NA NA NA no change NA NA NA 1:211018783 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_6MY8W3H0 4.11489877258609 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 16 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_6MY8W3H0 4.11489877258609 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 34 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_6MY8W3H0 4.11489877258609 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 5 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_6MY8W3H0 4.11489877258609 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 6 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_6MY8W3H0 4.11489877258609 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_6MY8W3H0 4.11489877258609 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 17 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_6MY8W3H0 4.11489877258609 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_6MY8W3H0 4.11489877258609 NA NA NA differentially expressed NA NA NA 1:210775348 1:211019256 ARRIBA in-frame 1 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_6MY8W3H0 4.11489877258609 NA NA NA differentially expressed NA NA NA 1:211018783 1:211082898 ARRIBA frameshift 1 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_6MY8W3H0 4.11489877258609 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_6MY8W3H0 4.11489877258609 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_6MY8W3H0 4.11489877258609 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_6MY8W3H0 4.11489877258609 NA NA NA differentially expressed NA NA NA 1:211082780 1:211103602 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_7XRN3CFX 2.13054798618757 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_7XRN3CFX 2.13054798618757 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_7XRN3CFX 2.13054798618757 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_7XRN3CFX 2.13054798618757 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_7XRN3CFX 2.13054798618757 NA NA NA differentially expressed NA NA NA 1:210797508 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_7XRN3CFX 2.13054798618757 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_8MA5B8Y9 1.95516130844469 NA NA NA no change NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_8MA5B8Y9 1.95516130844469 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_8MA5B8Y9 1.95516130844469 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_8MA5B8Y9 1.95516130844469 NA NA NA no change NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_8MA5B8Y9 1.95516130844469 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_8MA5B8Y9 1.95516130844469 NA NA NA no change NA NA NA 1:210919640 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_8MA5B8Y9 1.95516130844469 NA NA NA no change NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_8MA5B8Y9 1.95516130844469 NA NA NA no change NA NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_912NX4Y0 3.22660645268006 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_912NX4Y0 3.22660645268006 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_912NX4Y0 3.22660645268006 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_912NX4Y0 3.22660645268006 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_912NX4Y0 3.22660645268006 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_912NX4Y0 3.22660645268006 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_912NX4Y0 3.22660645268006 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_912NX4Y0 3.22660645268006 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_912NX4Y0 3.22660645268006 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_92VDQ0NE 2.3338658135749 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 25 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_92VDQ0NE 2.3338658135749 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 23 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_92VDQ0NE 2.3338658135749 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_92VDQ0NE 2.3338658135749 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_92VDQ0NE 2.3338658135749 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_92VDQ0NE 2.3338658135749 NA NA NA differentially expressed NA NA NA 1:211018864 1:211107377 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_92VDQ0NE 2.3338658135749 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_92VDQ0NE 2.3338658135749 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_92VDQ0NE 2.3338658135749 NA NA NA differentially expressed NA NA NA 1:210775348 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_92VDQ0NE 2.3338658135749 NA NA NA differentially expressed NA NA NA 1:210775348 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_92VDQ0NE 2.3338658135749 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_92VDQ0NE 2.3338658135749 NA NA NA differentially expressed NA NA NA 1:210919640 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_9F09XV62 1.36555473307387 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_9F09XV62 1.36555473307387 NA NA NA no change NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_9F09XV62 1.36555473307387 NA NA NA no change NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_9F09XV62 1.36555473307387 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_9F09XV62 1.36555473307387 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AG4H9S3J 1.94576954875202 NA NA NA no change NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AG4H9S3J 1.94576954875202 NA NA NA no change NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AG4H9S3J 1.94576954875202 NA NA NA no change NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AG4H9S3J 1.94576954875202 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AG4H9S3J 1.94576954875202 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AJ6X83G5 4.34563609346822 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AJ6X83G5 4.34563609346822 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AJ6X83G5 4.34563609346822 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AJ6X83G5 4.34563609346822 NA NA NA differentially expressed NA NA NA 1:211018864 1:211107377 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AJ6X83G5 4.34563609346822 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AJ6X83G5 4.34563609346822 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AJ6X83G5 4.34563609346822 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AJ6X83G5 4.34563609346822 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AJ6X83G5 4.34563609346822 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AJ6X83G5 4.34563609346822 NA NA NA differentially expressed NA NA NA 1:210797508 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AMQGM1V9 2.39846041535519 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 13 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AMQGM1V9 2.39846041535519 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AMQGM1V9 2.39846041535519 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AMQGM1V9 2.39846041535519 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AMQGM1V9 2.39846041535519 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AMQGM1V9 2.39846041535519 NA NA NA differentially expressed NA NA NA 1:211103496 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AMQGM1V9 2.39846041535519 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AMQGM1V9 2.39846041535519 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AMQGM1V9 2.39846041535519 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AWH9757B 2.54822849466082 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AWH9757B 2.54822849466082 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AWH9757B 2.54822849466082 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AWH9757B 2.54822849466082 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AWH9757B 2.54822849466082 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AWH9757B 2.54822849466082 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AWH9757B 2.54822849466082 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_AWH9757B 2.54822849466082 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_BKR4E30C 2.25897054304064 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_BKR4E30C 2.25897054304064 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_BKR4E30C 2.25897054304064 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_BKR4E30C 2.25897054304064 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_BKR4E30C 2.25897054304064 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_BKR4E30C 2.25897054304064 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_BKR4E30C 2.25897054304064 NA NA NA differentially expressed NA NA NA 1:211082780 1:211103602 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_BKR4E30C 2.25897054304064 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_C6ZZ3FY5 1.17365269285413 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_C6ZZ3FY5 1.17365269285413 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_C6ZZ3FY5 1.17365269285413 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_C7N3J4NW 4.52260483756419 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_C7N3J4NW 4.52260483756419 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_C7N3J4NW 4.52260483756419 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_C7N3J4NW 4.52260483756419 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_C7N3J4NW 4.52260483756419 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_C7N3J4NW 4.52260483756419 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_C7N3J4NW 4.52260483756419 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_C7N3J4NW 4.52260483756419 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 17 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CQSAJ7BF 3.79598842231576 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CQSAJ7BF 3.79598842231576 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CQSAJ7BF 3.79598842231576 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CQSAJ7BF 3.79598842231576 NA NA NA differentially expressed NA NA NA 1:210797508 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CQSAJ7BF 3.79598842231576 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CQSAJ7BF 3.79598842231576 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CQSAJ7BF 3.79598842231576 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CQSAJ7BF 3.79598842231576 NA NA NA differentially expressed NA NA NA 1:210775348 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CQSAJ7BF 3.79598842231576 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CQSAJ7BF 3.79598842231576 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CQSAJ7BF 3.79598842231576 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CQSAJ7BF 3.79598842231576 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 10 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CREQ97QC 2.53244202934516 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 18 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CREQ97QC 2.53244202934516 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CREQ97QC 2.53244202934516 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CREQ97QC 2.53244202934516 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 6 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CREQ97QC 2.53244202934516 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 12 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CREQ97QC 2.53244202934516 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CREQ97QC 2.53244202934516 NA NA NA differentially expressed NA NA NA 1:210775348 1:211090690 ARRIBA frameshift 1 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CREQ97QC 2.53244202934516 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CREQ97QC 2.53244202934516 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CREQ97QC 2.53244202934516 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CREQ97QC 2.53244202934516 NA NA NA differentially expressed NA NA NA 1:211018783 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CREQ97QC 2.53244202934516 NA NA NA differentially expressed NA NA NA 1:211082780 1:211103602 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CVGFNCBJ 3.09734467623406 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CVGFNCBJ 3.09734467623406 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CVGFNCBJ 3.09734467623406 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CVGFNCBJ 3.09734467623406 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CVGFNCBJ 3.09734467623406 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CVGFNCBJ 3.09734467623406 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CVGFNCBJ 3.09734467623406 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CZ82ANWP 1.64589038396749 NA NA NA no change NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CZ82ANWP 1.64589038396749 NA NA NA no change NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CZ82ANWP 1.64589038396749 NA NA NA no change NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CZ82ANWP 1.64589038396749 NA NA NA no change NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CZ82ANWP 1.64589038396749 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 12 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_CZ82ANWP 1.64589038396749 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DMZP9G1H 3.64021074302108 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 23 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DMZP9G1H 3.64021074302108 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 24 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DMZP9G1H 3.64021074302108 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 5 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DMZP9G1H 3.64021074302108 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DMZP9G1H 3.64021074302108 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DMZP9G1H 3.64021074302108 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 2 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DMZP9G1H 3.64021074302108 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 7 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DMZP9G1H 3.64021074302108 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DMZP9G1H 3.64021074302108 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DMZP9G1H 3.64021074302108 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DMZP9G1H 3.64021074302108 NA NA NA differentially expressed NA NA NA 1:211018783 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DMZP9G1H 3.64021074302108 NA NA NA differentially expressed NA NA NA 1:210919640 1:211082898 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DMZP9G1H 3.64021074302108 NA NA NA differentially expressed NA NA NA 1:211082780 1:211103602 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DVCQ8XDZ 2.95985518736006 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 18 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DVCQ8XDZ 2.95985518736006 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DVCQ8XDZ 2.95985518736006 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DVCQ8XDZ 2.95985518736006 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DVCQ8XDZ 2.95985518736006 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DVCQ8XDZ 2.95985518736006 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DVCQ8XDZ 2.95985518736006 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DVCQ8XDZ 2.95985518736006 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_DVCQ8XDZ 2.95985518736006 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ERJAJ0KA 1.66800358746845 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ERJAJ0KA 1.66800358746845 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ERJAJ0KA 1.66800358746845 NA NA NA no change NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ERJAJ0KA 1.66800358746845 NA NA NA no change NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ERJAJ0KA 1.66800358746845 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ERJAJ0KA 1.66800358746845 NA NA NA no change NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ERJAJ0KA 1.66800358746845 NA NA NA no change NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ERJAJ0KA 1.66800358746845 NA NA NA no change NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ERJAJ0KA 1.66800358746845 NA NA NA no change NA NA NA 1:211018783 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_FJZPQZ2C 1.0998317466907 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 7 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_FJZPQZ2C 1.0998317466907 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_FJZPQZ2C 1.0998317466907 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_FJZPQZ2C 1.0998317466907 NA NA NA no change NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_FJZPQZ2C 1.0998317466907 NA NA NA no change NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_FJZPQZ2C 1.0998317466907 NA NA NA no change NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_FJZPQZ2C 1.0998317466907 NA NA NA no change NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_FW5ECXXK 2.34646935425043 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 13 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_FW5ECXXK 2.34646935425043 NA NA NA differentially expressed NA NA NA 1:210775348 1:211082898 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_FW5ECXXK 2.34646935425043 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_FW5ECXXK 2.34646935425043 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_FW5ECXXK 2.34646935425043 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_FW5ECXXK 2.34646935425043 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_FW5ECXXK 2.34646935425043 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_FW5ECXXK 2.34646935425043 NA NA NA differentially expressed NA NA NA 1:210775348 1:210920069 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_HCP5C912 2.36645309200404 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 29 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_HCP5C912 2.36645309200404 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 28 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_HCP5C912 2.36645309200404 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_HCP5C912 2.36645309200404 NA NA NA differentially expressed NA NA NA 1:210775348 1:211019256 ARRIBA in-frame 1 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_HCP5C912 2.36645309200404 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_HCP5C912 2.36645309200404 NA NA NA differentially expressed NA NA NA 1:211018783 1:211082898 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_HCP5C912 2.36645309200404 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_HCP5C912 2.36645309200404 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_HCP5C912 2.36645309200404 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_HCP5C912 2.36645309200404 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_HCP5C912 2.36645309200404 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_HCP5C912 2.36645309200404 NA NA NA differentially expressed NA NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_HCP5C912 2.36645309200404 NA NA NA differentially expressed NA NA NA 1:211103496 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_HCP5C912 2.36645309200404 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_JVA2NQFF 2.61868128775996 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA in-frame 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_JVA2NQFF 2.61868128775996 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_JVA2NQFF 2.61868128775996 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_JVA2NQFF 2.61868128775996 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_JVA2NQFF 2.61868128775996 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_JVA2NQFF 2.61868128775996 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_JXNZYGCR 2.20543927315673 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 12 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_JXNZYGCR 2.20543927315673 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_JXNZYGCR 2.20543927315673 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_JXNZYGCR 2.20543927315673 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_JXNZYGCR 2.20543927315673 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_JXNZYGCR 2.20543927315673 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_JXNZYGCR 2.20543927315673 NA NA NA differentially expressed NA NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_JXNZYGCR 2.20543927315673 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_K5802F84 3.45071797026707 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 15 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_K5802F84 3.45071797026707 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 46 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_K5802F84 3.45071797026707 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_K5802F84 3.45071797026707 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_K5802F84 3.45071797026707 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_K5802F84 3.45071797026707 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 6 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_K5802F84 3.45071797026707 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_K5802F84 3.45071797026707 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 10 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_K5802F84 3.45071797026707 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_K5802F84 3.45071797026707 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_K5802F84 3.45071797026707 NA NA NA differentially expressed NA NA NA 1:211103496 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KPT2WPHW 2.98292480077658 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 13 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KPT2WPHW 2.98292480077658 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 27 5 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KPT2WPHW 2.98292480077658 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KPT2WPHW 2.98292480077658 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KPT2WPHW 2.98292480077658 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KPT2WPHW 2.98292480077658 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KPT2WPHW 2.98292480077658 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KPT2WPHW 2.98292480077658 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KPT2WPHW 2.98292480077658 NA NA NA differentially expressed NA NA NA 1:210919640 1:211082898 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KPT2WPHW 2.98292480077658 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KPT2WPHW 2.98292480077658 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KQ6ZW085 2.88136858926657 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KQ6ZW085 2.88136858926657 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KQ6ZW085 2.88136858926657 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KQ6ZW085 2.88136858926657 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KQ6ZW085 2.88136858926657 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KQ6ZW085 2.88136858926657 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KX6J8TRK 1.29032899749049 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KX6J8TRK 1.29032899749049 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KX6J8TRK 1.29032899749049 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KX6J8TRK 1.29032899749049 NA NA NA no change NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KX6J8TRK 1.29032899749049 NA NA NA no change NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_KX6J8TRK 1.29032899749049 NA NA NA no change NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1PVEHCM 3.7516905102167 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1PVEHCM 3.7516905102167 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1PVEHCM 3.7516905102167 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1PVEHCM 3.7516905102167 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1PVEHCM 3.7516905102167 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1PVEHCM 3.7516905102167 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1PVEHCM 3.7516905102167 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1PVEHCM 3.7516905102167 NA NA NA differentially expressed NA NA NA 1:210775348 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1T1K5WV 4.38810987959662 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 18 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1T1K5WV 4.38810987959662 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1T1K5WV 4.38810987959662 NA NA NA differentially expressed NA NA NA 1:210775348 1:211019256 ARRIBA in-frame 1 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1T1K5WV 4.38810987959662 NA NA NA differentially expressed NA NA NA 1:210775348 1:210920069 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1T1K5WV 4.38810987959662 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1T1K5WV 4.38810987959662 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1T1K5WV 4.38810987959662 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1T1K5WV 4.38810987959662 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 14 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1T1K5WV 4.38810987959662 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1T1K5WV 4.38810987959662 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M1T1K5WV 4.38810987959662 NA NA NA differentially expressed NA NA NA 1:211018864 1:211107377 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M4NVX721 2.08174243082969 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 12 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M4NVX721 2.08174243082969 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M4NVX721 2.08174243082969 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M4NVX721 2.08174243082969 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M4NVX721 2.08174243082969 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M4NVX721 2.08174243082969 NA NA NA differentially expressed NA NA NA 1:210775348 1:210920069 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_M4NVX721 2.08174243082969 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_MF47B9ZW 3.57797207955671 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_MF47B9ZW 3.57797207955671 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_MF47B9ZW 3.57797207955671 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_MF47B9ZW 3.57797207955671 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_MF47B9ZW 3.57797207955671 NA NA NA differentially expressed NA NA NA 1:210775348 1:210920069 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NT9NZYFD 2.65501621838205 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 4 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NT9NZYFD 2.65501621838205 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 26 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NT9NZYFD 2.65501621838205 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NT9NZYFD 2.65501621838205 NA NA NA differentially expressed NA NA NA 1:211018783 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NT9NZYFD 2.65501621838205 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NT9NZYFD 2.65501621838205 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NT9NZYFD 2.65501621838205 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NT9NZYFD 2.65501621838205 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NT9NZYFD 2.65501621838205 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NT9NZYFD 2.65501621838205 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NVKGSMXS 3.80828793984113 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 12 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NVKGSMXS 3.80828793984113 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NVKGSMXS 3.80828793984113 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NVKGSMXS 3.80828793984113 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NVKGSMXS 3.80828793984113 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NVKGSMXS 3.80828793984113 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NYS8TRCB 1.32612157964562 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NYS8TRCB 1.32612157964562 NA NA NA no change NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NYS8TRCB 1.32612157964562 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NYS8TRCB 1.32612157964562 NA NA NA no change NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NYS8TRCB 1.32612157964562 NA NA NA no change NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NYS8TRCB 1.32612157964562 NA NA NA no change NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NYS8TRCB 1.32612157964562 NA NA NA no change NA NA NA 1:210775348 1:210920069 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_NYS8TRCB 1.32612157964562 NA NA NA no change NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_PQ7CQFYR 3.81828899190024 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_PQ7CQFYR 3.81828899190024 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_PQ7CQFYR 3.81828899190024 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_PQ7CQFYR 3.81828899190024 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_PQ7CQFYR 3.81828899190024 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_PQ7CQFYR 3.81828899190024 NA NA NA differentially expressed NA NA NA 1:211018783 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_PQ7CQFYR 3.81828899190024 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QC3XCE6X 2.68439756085587 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QC3XCE6X 2.68439756085587 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QC3XCE6X 2.68439756085587 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QC3XCE6X 2.68439756085587 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QC3XCE6X 2.68439756085587 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QC3XCE6X 2.68439756085587 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QC3XCE6X 2.68439756085587 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QC3XCE6X 2.68439756085587 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QC3XCE6X 2.68439756085587 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QNAQGAV6 2.69891017592312 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QNAQGAV6 2.69891017592312 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QNAQGAV6 2.69891017592312 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 10 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QNAQGAV6 2.69891017592312 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QNAQGAV6 2.69891017592312 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 16 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QNAQGAV6 2.69891017592312 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QNAQGAV6 2.69891017592312 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QNAQGAV6 2.69891017592312 NA NA NA differentially expressed NA NA NA 1:210775348 1:211019256 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QNAQGAV6 2.69891017592312 NA NA NA differentially expressed NA NA NA 1:211018783 1:211082898 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QNAQGAV6 2.69891017592312 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QV51J756 2.42269956787958 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QV51J756 2.42269956787958 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QV51J756 2.42269956787958 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QV51J756 2.42269956787958 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QV51J756 2.42269956787958 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QV51J756 2.42269956787958 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_QV51J756 2.42269956787958 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_R7HZCZ8B 1.36988329808555 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_R7HZCZ8B 1.36988329808555 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_R7HZCZ8B 1.36988329808555 NA NA NA no change NA NA NA 1:210775348 1:210920069 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_R7HZCZ8B 1.36988329808555 NA NA NA no change NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_R7HZCZ8B 1.36988329808555 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_TG93XC55 4.06632583757526 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 25 7 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_TG93XC55 4.06632583757526 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 4 5 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_TG93XC55 4.06632583757526 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_TG93XC55 4.06632583757526 NA NA NA differentially expressed NA NA NA 1:211103496 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_TG93XC55 4.06632583757526 NA NA NA differentially expressed NA NA NA 1:211082780 1:211103602 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_TG93XC55 4.06632583757526 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_TG93XC55 4.06632583757526 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_TG93XC55 4.06632583757526 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_TG93XC55 4.06632583757526 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 13 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_TG93XC55 4.06632583757526 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 4 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_TG93XC55 4.06632583757526 NA NA NA differentially expressed NA NA NA 1:210919640 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_TG93XC55 4.06632583757526 NA NA NA differentially expressed NA NA NA 1:211018783 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VMMJYN8Z 2.63800883023558 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 18 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VMMJYN8Z 2.63800883023558 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VMMJYN8Z 2.63800883023558 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VMMJYN8Z 2.63800883023558 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VMMJYN8Z 2.63800883023558 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 8 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VMMJYN8Z 2.63800883023558 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VMMJYN8Z 2.63800883023558 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VMMJYN8Z 2.63800883023558 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VMMJYN8Z 2.63800883023558 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VNE0ZPBS 3.56526165284459 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VNE0ZPBS 3.56526165284459 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VNE0ZPBS 3.56526165284459 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VNE0ZPBS 3.56526165284459 NA NA NA differentially expressed NA NA NA 1:211018783 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VNE0ZPBS 3.56526165284459 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VNE0ZPBS 3.56526165284459 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 17 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VNE0ZPBS 3.56526165284459 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VNE0ZPBS 3.56526165284459 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VNE0ZPBS 3.56526165284459 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VPMKHW9X 3.9944346318268 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VPMKHW9X 3.9944346318268 NA NA NA differentially expressed NA NA NA 1:210919640 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VPMKHW9X 3.9944346318268 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VPMKHW9X 3.9944346318268 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VPMKHW9X 3.9944346318268 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VPMKHW9X 3.9944346318268 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VPMKHW9X 3.9944346318268 NA NA NA differentially expressed NA NA NA 1:211082780 1:211103602 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VPMKHW9X 3.9944346318268 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 14 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VPMKHW9X 3.9944346318268 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VPMKHW9X 3.9944346318268 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VPMKHW9X 3.9944346318268 NA NA NA differentially expressed NA NA NA 1:210775348 1:211019256 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VPMKHW9X 3.9944346318268 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VPMKHW9X 3.9944346318268 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VTJ9ESSV 2.53696660505022 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VTJ9ESSV 2.53696660505022 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VTJ9ESSV 2.53696660505022 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 3 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VTJ9ESSV 2.53696660505022 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VTJ9ESSV 2.53696660505022 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_VTJ9ESSV 2.53696660505022 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_W18SF91A 1.61597671485542 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_W18SF91A 1.61597671485542 NA NA NA no change NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_W18SF91A 1.61597671485542 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_W18SF91A 1.61597671485542 NA NA NA no change NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_W18SF91A 1.61597671485542 NA NA NA no change NA NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_W18SF91A 1.61597671485542 NA NA NA no change NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_W18SF91A 1.61597671485542 NA NA NA no change NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WCRKYV0T 4.09600660418697 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 51 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WCRKYV0T 4.09600660418697 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 18 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WCRKYV0T 4.09600660418697 NA NA NA differentially expressed NA NA NA 1:210775348 1:211019256 ARRIBA in-frame 1 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WCRKYV0T 4.09600660418697 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WCRKYV0T 4.09600660418697 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 13 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WCRKYV0T 4.09600660418697 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 6 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WCRKYV0T 4.09600660418697 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 5 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WCRKYV0T 4.09600660418697 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WCRKYV0T 4.09600660418697 NA NA NA differentially expressed NA NA NA 1:211018783 1:211082898 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WCRKYV0T 4.09600660418697 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WCRKYV0T 4.09600660418697 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WCRKYV0T 4.09600660418697 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WCRKYV0T 4.09600660418697 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WGK8ZMVA 0.942426579237604 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WGK8ZMVA 0.942426579237604 NA NA NA no change NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WGK8ZMVA 0.942426579237604 NA NA NA no change NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WGK8ZMVA 0.942426579237604 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WYG77VVP 2.76380173850783 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WYG77VVP 2.76380173850783 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WYG77VVP 2.76380173850783 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 8 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WYG77VVP 2.76380173850783 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WYG77VVP 2.76380173850783 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_WYG77VVP 2.76380173850783 NA NA NA differentially expressed NA NA NA 1:211082780 1:211103602 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YB2RXRHT 3.25714229475116 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YB2RXRHT 3.25714229475116 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YB2RXRHT 3.25714229475116 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 22 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YB2RXRHT 3.25714229475116 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YB2RXRHT 3.25714229475116 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YB2RXRHT 3.25714229475116 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YB2RXRHT 3.25714229475116 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YB2RXRHT 3.25714229475116 NA NA NA differentially expressed NA NA NA 1:210919640 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YB2RXRHT 3.25714229475116 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YMAJC22S 2.60350383149347 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 15 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YMAJC22S 2.60350383149347 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YMAJC22S 2.60350383149347 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YMAJC22S 2.60350383149347 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YMAJC22S 2.60350383149347 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YMAJC22S 2.60350383149347 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YMAJC22S 2.60350383149347 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YMAJC22S 2.60350383149347 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YNEQJ6AH 1.87535594092743 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YNEQJ6AH 1.87535594092743 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YNEQJ6AH 1.87535594092743 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_YNEQJ6AH 1.87535594092743 NA NA NA no change NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_Z2NWPQKF 2.02558036552263 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_Z2NWPQKF 2.02558036552263 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_Z2NWPQKF 2.02558036552263 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_Z2NWPQKF 2.02558036552263 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_Z2NWPQKF 2.02558036552263 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZH1FBX50 4.14287006567823 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 26 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZH1FBX50 4.14287006567823 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 20 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZH1FBX50 4.14287006567823 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZH1FBX50 4.14287006567823 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZH1FBX50 4.14287006567823 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZH1FBX50 4.14287006567823 NA NA NA differentially expressed NA NA NA 1:211103496 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZH1FBX50 4.14287006567823 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZH1FBX50 4.14287006567823 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZH1FBX50 4.14287006567823 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZH1FBX50 4.14287006567823 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZH1FBX50 4.14287006567823 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZH1FBX50 4.14287006567823 NA NA NA differentially expressed NA NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZR96A4FH 3.30347144946073 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZR96A4FH 3.30347144946073 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 10 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZR96A4FH 3.30347144946073 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 9 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZR96A4FH 3.30347144946073 NA NA NA differentially expressed NA NA NA 1:210919640 1:211090690 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZR96A4FH 3.30347144946073 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 31 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZR96A4FH 3.30347144946073 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 24 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZR96A4FH 3.30347144946073 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZR96A4FH 3.30347144946073 NA NA NA differentially expressed NA NA NA 1:211018783 1:211082898 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZR96A4FH 3.30347144946073 NA NA NA differentially expressed NA NA NA 1:211018783 1:211090690 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZR96A4FH 3.30347144946073 NA NA NA differentially expressed NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZR96A4FH 3.30347144946073 NA NA NA differentially expressed NA NA NA 1:210775348 1:211019256 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZR96A4FH 3.30347144946073 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZR96A4FH 3.30347144946073 NA NA NA differentially expressed NA NA NA 1:211018864 1:211107377 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZXYDSBM9 3.36154002506614 NA NA NA differentially expressed NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 11 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZXYDSBM9 3.36154002506614 NA NA NA differentially expressed NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 12 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZXYDSBM9 3.36154002506614 NA NA NA differentially expressed NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZXYDSBM9 3.36154002506614 NA NA NA differentially expressed NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZXYDSBM9 3.36154002506614 NA NA NA differentially expressed NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZXYDSBM9 3.36154002506614 NA NA NA differentially expressed NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZXYDSBM9 3.36154002506614 NA NA NA differentially expressed NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZXYDSBM9 3.36154002506614 NA NA NA differentially expressed NA NA NA 1:210919640 1:211019256 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZZPBANDD 1.8257156814599 NA NA NA no change NA NA NA 1:211018864 1:211090690 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZZPBANDD 1.8257156814599 NA NA NA no change NA NA NA 1:210919640 1:210920069 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZZPBANDD 1.8257156814599 NA NA NA no change NA NA NA 1:211082780 1:211090690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZZPBANDD 1.8257156814599 NA NA NA no change NA NA NA 1:211018783 1:211019256 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZZPBANDD 1.8257156814599 NA NA NA no change NA NA NA 1:211018864 1:211082898 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZZPBANDD 1.8257156814599 NA NA NA no change NA NA NA 1:211082780 1:211107377 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZZPBANDD 1.8257156814599 NA NA NA no change NA NA NA 1:211090562 1:211107377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--AL590132.1 BS_ZZPBANDD 1.8257156814599 NA NA NA no change NA NA NA 1:211018864 1:211019256 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA -KCNH1--HHAT BS_S2TA8R29 0.942426579237604 2.49557376479255 NA NA no change differentially expressed NA NA 1:210775348 1:210674288 ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_INVERSION:-:+:[527]],inversion KCNH1 NA HHAT NA Oncogene NA NA NA NA -KCNH1--HHAT BS_S2TA8R29 0.942426579237604 2.49557376479255 NA NA no change differentially expressed NA NA 1:210740896 1:210674288 ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_INVERSION:-:+:[527]],duplication/3'-3' KCNH1 NA HHAT NA Oncogene NA NA NA NA -KCNH1--KCNH1 BS_044XZ8ST 2.70715082215773 2.70715082215773 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_07ANYSYQ 1.73628719321685 1.73628719321685 NA NA no change no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_0T17SY47 2.25104172243631 2.25104172243631 NA NA differentially expressed differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_1G3WYEN3 1.57401575148041 1.57401575148041 NA NA no change no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_1T19NFJ8 2.31351461601261 2.31351461601261 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 35 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_258RRGDM 1.85236087834876 1.85236087834876 NA NA no change no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_273HKCT4 1.46666901488323 1.46666901488323 NA NA no change no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_2XD3MNKD 2.58159713075994 2.58159713075994 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 11 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_398KYV92 3.63653654788377 3.63653654788377 NA NA differentially expressed differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 24 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_39CGACC7 1.72212556182583 1.72212556182583 NA NA no change no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_3MS8WVNR 0.875393308752539 0.875393308752539 NA NA no change no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_3P20Q2C3 2.155859836416 2.155859836416 NA NA differentially expressed differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_4GTESTSE 2.37389011663645 2.37389011663645 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_5K3R0F5D 1.45845659013808 1.45845659013808 NA NA no change no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_60K3EQ9S 1.13957961623969 1.13957961623969 NA NA no change no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_67Z63A2K 1.33936226198201 1.33936226198201 NA NA no change no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_680K119G 1.22123530658558 1.22123530658558 NA NA no change no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_6MY8W3H0 4.11489877258609 4.11489877258609 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 34 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_6T4JGBGY 0.793893117485448 0.793893117485448 NA NA no change no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_7XRN3CFX 2.13054798618757 2.13054798618757 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_8MA5B8Y9 1.95516130844469 1.95516130844469 NA NA no change no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_912NX4Y0 3.22660645268006 3.22660645268006 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_92VDQ0NE 2.3338658135749 2.3338658135749 NA NA differentially expressed differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 25 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_9F09XV62 1.36555473307387 1.36555473307387 NA NA no change no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_AG4H9S3J 1.94576954875202 1.94576954875202 NA NA no change no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_AJ6X83G5 4.34563609346822 4.34563609346822 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_AMQGM1V9 2.39846041535519 2.39846041535519 NA NA differentially expressed differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_AWH9757B 2.54822849466082 2.54822849466082 NA NA differentially expressed differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_BKR4E30C 2.25897054304064 2.25897054304064 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_C6ZZ3FY5 1.17365269285413 1.17365269285413 NA NA no change no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 4 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_C7N3J4NW 4.52260483756419 4.52260483756419 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 17 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_CQSAJ7BF 3.79598842231576 3.79598842231576 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_CREQ97QC 2.53244202934516 2.53244202934516 NA NA differentially expressed differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 18 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_CVGFNCBJ 3.09734467623406 3.09734467623406 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_CW9QV8AG 2.11918290638347 2.11918290638347 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_CZ82ANWP 1.64589038396749 1.64589038396749 NA NA no change no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_DMZP9G1H 3.64021074302108 3.64021074302108 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 24 4 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_DVCQ8XDZ 2.95985518736006 2.95985518736006 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 18 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_ERJAJ0KA 1.66800358746845 1.66800358746845 NA NA no change no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_FJZPQZ2C 1.0998317466907 1.0998317466907 NA NA no change no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_FW5ECXXK 2.34646935425043 2.34646935425043 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 13 4 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_GYXSDZ56 1.14938082793054 1.14938082793054 NA NA no change no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_HCP5C912 2.36645309200404 2.36645309200404 NA NA differentially expressed differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 29 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_JVA2NQFF 2.61868128775996 2.61868128775996 NA NA differentially expressed differentially expressed NA NA 1:211082780 1:211107377 ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_JXNZYGCR 2.20543927315673 2.20543927315673 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_K5802F84 3.45071797026707 3.45071797026707 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 46 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_KPT2WPHW 2.98292480077658 2.98292480077658 NA NA differentially expressed differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 27 5 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_KQ6ZW085 2.88136858926657 2.88136858926657 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_KX6J8TRK 1.29032899749049 1.29032899749049 NA NA no change no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_M1PVEHCM 3.7516905102167 3.7516905102167 NA NA differentially expressed differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_M1T1K5WV 4.38810987959662 4.38810987959662 NA NA differentially expressed differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 18 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_M4NVX721 2.08174243082969 2.08174243082969 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_MF47B9ZW 3.57797207955671 3.57797207955671 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_NT9NZYFD 2.65501621838205 2.65501621838205 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 26 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_NVKGSMXS 3.80828793984113 3.80828793984113 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_NYS8TRCB 1.32612157964562 1.32612157964562 NA NA no change no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_P4NX9MPA 0.942426579237604 0.942426579237604 NA NA no change no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_PQ7CQFYR 3.81828899190024 3.81828899190024 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_QC3XCE6X 2.68439756085587 2.68439756085587 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_QNAQGAV6 2.69891017592312 2.69891017592312 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 16 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_QV51J756 2.42269956787958 2.42269956787958 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_R7HZCZ8B 1.36988329808555 1.36988329808555 NA NA no change no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_T0RKFEKR 1.00175338794987 1.00175338794987 NA NA no change no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_TG93XC55 4.06632583757526 4.06632583757526 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 25 7 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_VMMJYN8Z 2.63800883023558 2.63800883023558 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 18 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_VNE0ZPBS 3.56526165284459 3.56526165284459 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 17 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_VPMKHW9X 3.9944346318268 3.9944346318268 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_VTJ9ESSV 2.53696660505022 2.53696660505022 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_W18SF91A 1.61597671485542 1.61597671485542 NA NA no change no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_WCRKYV0T 4.09600660418697 4.09600660418697 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 51 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_WGK8ZMVA 0.942426579237604 0.942426579237604 NA NA no change no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_WYG77VVP 2.76380173850783 2.76380173850783 NA NA differentially expressed differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 8 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_YB2RXRHT 3.25714229475116 3.25714229475116 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 22 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_YMAJC22S 2.60350383149347 2.60350383149347 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 15 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_YNEQJ6AH 1.87535594092743 1.87535594092743 NA NA no change no change NA NA 1:211082780 1:211107377 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_Z2NWPQKF 2.02558036552263 2.02558036552263 NA NA differentially expressed differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_ZH1FBX50 4.14287006567823 4.14287006567823 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 26 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_ZR96A4FH 3.30347144946073 3.30347144946073 NA NA differentially expressed differentially expressed NA NA 1:211018864 1:211090690 ARRIBA frameshift 31 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_ZXYDSBM9 3.36154002506614 3.36154002506614 NA NA differentially expressed differentially expressed NA NA 1:211082780 1:211107377 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH1--KCNH1 BS_ZZPBANDD 1.8257156814599 1.8257156814599 NA NA no change no change NA NA 1:211018864 1:211090690 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA -KCNH5--KCNH5 BS_273HKCT4 2.6630470302432 2.6630470302432 NA NA differentially expressed differentially expressed NA NA 14:62950133 14:62950559 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.40Mb]],duplication/non-canonical_splicing KCNH5 NA KCNH5 NA NA NA NA NA NA -KCNH5--KCNH5 BS_7T1J3KET 6.77193555207569 6.77193555207569 NA NA differentially expressed differentially expressed NA NA 14:62779728 14:63016954 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.40Mb]],duplication/non-canonical_splicing KCNH5 NA KCNH5 NA NA NA NA NA NA -KCNH7--KCNH7 BS_044XZ8ST 5.88230108640839 5.88230108640839 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_063ERW0R 6.08593983706526 6.08593983706526 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 2 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_0T17SY47 7.40383363352327 7.40383363352327 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_1G3WYEN3 8.27151903529925 8.27151903529925 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_1T19NFJ8 6.10018764082554 6.10018764082554 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_258RRGDM 8.40162193039921 8.40162193039921 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 2 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_273HKCT4 4.40145961923493 4.40145961923493 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_2AR3AP0N 7.05980366230476 7.05980366230476 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 2 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_2XD3MNKD 6.08593983706526 6.08593983706526 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_398KYV92 8.10907602921547 8.10907602921547 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_39CGACC7 2.9884500373954 2.9884500373954 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_3MYEMXPQ 20.2629902554216 20.2629902554216 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 25 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_3NWQXPQV 20.4281228678737 20.4281228678737 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 37 6 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_49FQXT2E 3.47949106544412 3.47949106544412 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_5K3R0F5D 7.98137270467788 7.98137270467788 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_5PEFNDCY 4.88933939532846 4.88933939532846 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_60K3EQ9S 5.13439845710502 5.13439845710502 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_6MY8W3H0 11.3711561393282 11.3711561393282 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_912NX4Y0 7.8095473378879 7.8095473378879 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_92VDQ0NE 8.07011249259276 8.07011249259276 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 16 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_AKRHBPNZ 6.3773133062837 6.3773133062837 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 3 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_AMQGM1V9 12.5228795317247 12.5228795317247 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 14 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_BSV07M7Z 17.2933437604367 17.2933437604367 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 19 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_CREQ97QC 6.9882073828859 6.9882073828859 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_CVGFNCBJ 6.58894144929392 6.58894144929392 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_DMZP9G1H 11.8682454327205 11.8682454327205 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 14 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_ERJAJ0KA 3.3609688210871 3.3609688210871 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_GNV89A5P 18.6051291688285 18.6051291688285 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 23 6 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_HCP5C912 8.86686607500457 8.86686607500457 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 16 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_JXNZYGCR 5.33571305279675 5.33571305279675 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_K5802F84 8.90870145542598 8.90870145542598 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 10 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_KPT2WPHW 11.8729861214973 11.8729861214973 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 19 5 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_KZPR01BD 5.08284014624759 5.08284014624759 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_M1PVEHCM 12.3785611296603 12.3785611296603 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_M4NVX721 7.53537234967081 7.53537234967081 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_N6NE6B3W 9.13701188062569 9.13701188062569 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 13 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_NT9NZYFD 7.13043673382467 7.13043673382467 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 16 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_NVKGSMXS 12.7562651747808 12.7562651747808 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_PQ7CQFYR 4.92505594438405 4.92505594438405 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_QC3XCE6X 8.90870145542598 8.90870145542598 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_QEYPFYHD 13.3034301415657 13.3034301415657 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 30 4 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_QNAQGAV6 6.71700419963783 6.71700419963783 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_QV51J756 7.17700300327801 7.17700300327801 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_SDA4RMMG 5.67044417659725 5.67044417659725 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_TDEFAPNH 12.0040167624313 12.0040167624313 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 8 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_TG93XC55 12.4596981138779 12.4596981138779 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 21 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_VMMJYN8Z 8.09936221985138 8.09936221985138 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_VNE0ZPBS 11.1365854044079 11.1365854044079 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 10 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_VPMKHW9X 10.1760680201688 10.1760680201688 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 11 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_VTJ9ESSV 5.83761730637085 5.83761730637085 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_WCRKYV0T 11.4692956782538 11.4692956782538 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 14 4 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_XJTW0P8P 12.1183075719473 12.1183075719473 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 15 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_Y7F9E2E9 4.85337821046895 4.85337821046895 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_YB2RXRHT 10.0165525875099 10.0165525875099 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_YMAJC22S 7.4700149190173 7.4700149190173 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_ZH1FBX50 11.1800215360265 11.1800215360265 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 12 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_ZR96A4FH 10.6033626197539 10.6033626197539 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 22 5 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNH7--KCNH7 BS_ZZPBANDD 4.79897034053824 4.79897034053824 NA NA differentially expressed differentially expressed NA NA 2:162504443 2:162518158 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA -KCNJ10--BLOC1S2 BS_GPEGRCCT 0.062013341698801 0.0642936668400362 NA NA no change no change NA NA 1:160039605 10:100276343 ARRIBA other 6 1 medium [INTERCHROMOSOMAL[chr1--chr10]],translocation/5'-5' KCNJ10 NA BLOC1S2 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_0X9EGHY2 0.226733136874676 0.226733136874676 NA NA no change no change NA NA 21:37714211 21:37715131 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_37GTVG4N 0.0811517805675588 0.0811517805675588 NA NA no change no change NA NA 21:37714211 21:37715131 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_ARFQ1WG3 0.526825866249147 0.526825866249147 NA NA no change no change NA NA 21:37714211 21:37715131 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_FEPRNEXX 2.56374016846732 2.56374016846732 NA NA differentially expressed differentially expressed NA NA 21:37714211 21:37715131 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_GG9W3J9Y 0.163470674316902 0.163470674316902 NA NA no change no change NA NA 21:37714211 21:37715131 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_GS1KR5PK 0.916328859934976 0.916328859934976 NA NA no change no change NA NA 21:37714211 21:37715131 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_HCP5C912 1.03451601483998 1.03451601483998 NA NA no change no change NA NA 21:37714211 21:37715131 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_J71N7D09 0.480138467192989 0.480138467192989 NA NA no change no change NA NA 21:37714211 21:37715131 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_N6NE6B3W 2.17406614391279 2.17406614391279 NA NA differentially expressed differentially expressed NA NA 21:37714211 21:37715131 ARRIBA in-frame 20 2 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_NZ71XCG3 0.591500734343069 0.591500734343069 NA NA no change no change NA NA 21:37714211 21:37715131 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_QC3XCE6X 0.823731347751884 0.823731347751884 NA NA no change no change NA NA 21:37714211 21:37715131 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_QWNBZ9RJ 0.0979176763291771 0.0979176763291771 NA NA no change no change NA NA 21:37714211 21:37715131 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_R7HZCZ8B 0.0299020253585326 0.0299020253585326 NA NA no change no change NA NA 21:37714211 21:37715131 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_XJTW0P8P 2.90027252884472 2.90027252884472 NA NA differentially expressed differentially expressed NA NA 21:37714211 21:37715131 ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_YMAJC22S 1.08358958222591 1.08358958222591 NA NA no change no change NA NA 21:37714211 21:37715131 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_ZR96A4FH 0.812519523660227 0.812519523660227 NA NA no change no change NA NA 21:37714211 21:37715131 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNJ6--KCNJ6 BS_ZXYDSBM9 0.533398301071531 0.533398301071531 NA NA no change no change NA NA 21:37714211 21:37715131 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA -KCNK10--KCNK10 BS_1A6MQ9ZA 1.51686138957359 1.51686138957359 NA NA no change no change NA NA 14:88227375 14:88263551 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_1NPD7PVG 3.51810735384449 3.51810735384449 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_37GTVG4N 4.16409746044722 4.16409746044722 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_3XY76V8T 1.49910684795822 1.49910684795822 NA NA no change no change NA NA 14:88227375 14:88263551 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_478TN841 4.13547202568391 4.13547202568391 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_5YJEPPTP 2.17722075407096 2.17722075407096 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_7FWZ518S 1.60390650285516 1.60390650285516 NA NA no change no change NA NA 14:88227375 14:88263551 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_8PNA0V6R 2.69872369181935 2.69872369181935 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_A7MC2KR2 1.54035207873055 1.54035207873055 NA NA no change no change NA NA 14:88227375 14:88263551 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_BPSTSCBJ 2.96885743768299 2.96885743768299 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_C05FKR8X 6.84715884500824 6.84715884500824 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_CZ82ANWP 1.60390650285516 1.60390650285516 NA NA no change no change NA NA 14:88227375 14:88263551 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_FEPRNEXX 3.63809704576087 3.63809704576087 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_HCP5C912 1.68266732385466 1.68266732385466 NA NA no change no change NA NA 14:88227375 14:88263551 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_JVA2NQFF 2.14943490214458 2.14943490214458 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_K2VYFVKZ 2.48989442749976 2.48989442749976 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_K5802F84 2.1864188653302 2.1864188653302 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_M4NVX721 1.0613531975479 1.0613531975479 NA NA no change no change NA NA 14:88227375 14:88263551 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_MBSTWZA6 3.56236590078839 3.56236590078839 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_N5DVEJXT 4.37055217249785 4.37055217249785 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_N6NE6B3W 3.17323200585665 3.17323200585665 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_QEYPFYHD 3.44458603245677 3.44458603245677 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_QTSXW7DA 1.29559998375415 1.29559998375415 NA NA no change no change NA NA 14:88227375 14:88263551 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_QWNBZ9RJ 4.59221633293898 4.59221633293898 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_S69QZAJR 0.287985359825537 0.287985359825537 NA NA no change no change NA NA 14:88227375 14:88263551 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_SHMC4902 3.17957138885916 3.17957138885916 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_SXCZ3CXN 3.0762909505381 3.0762909505381 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_TG93XC55 1.40237053948336 1.40237053948336 NA NA no change no change NA NA 14:88227375 14:88263551 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_TRKH2SPE 1.69924678975872 1.69924678975872 NA NA no change no change NA NA 14:88227375 14:88263551 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_XJTW0P8P 2.5626627312947 2.5626627312947 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_Y7F9E2E9 2.41087088626622 2.41087088626622 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_YNEQJ6AH 2.55867161975027 2.55867161975027 NA NA differentially expressed differentially expressed NA NA 14:88227375 14:88263551 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_YVMEEBKC 1.89056855044169 1.89056855044169 NA NA no change no change NA NA 14:88227375 14:88263551 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK10--KCNK10 BS_ZVWE73JZ 0.857946977374133 0.857946977374133 NA NA no change no change NA NA 14:88227375 14:88263551 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA -KCNK18--MIR3663HG(14075)/RPL12P26(13034) BS_WH5HDE0A 50.4944304740649 -0.290162962551712 NA NA differentially expressed no change NA NA 10:117201287 10:117183134 ARRIBA frameshift 11 1 high [],duplication KCNK18 NA MIR3663HG RPL12P26 NA NA NA NA NA -KCNK9--KCNK9 BS_1T19NFJ8 -0.484876283125678 -0.484876283125678 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_2SFTWNVE 0.431604448878048 0.431604448878048 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_7FWZ518S 0.628257279859835 0.628257279859835 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 7 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_92VDQ0NE -0.219780319825459 -0.219780319825459 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_9DZ253JY 0.166904428728274 0.166904428728274 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 10 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_CGB2WS2A 0.718831619296855 0.718831619296855 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 4 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_ET8CJXSF 0.308889288425575 0.308889288425575 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 2 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_FEPRNEXX 1.52085100263254 1.52085100263254 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 14 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_FJZPQZ2C -0.428214817314477 -0.428214817314477 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_HCP5C912 -0.19488134685216 -0.19488134685216 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_M4NVX721 0.844885036049551 0.844885036049551 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_N6NE6B3W 1.44784039775601 1.44784039775601 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 27 5 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_NZ71XCG3 0.191658094930735 0.191658094930735 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_QEYPFYHD -0.287104672916428 -0.287104672916428 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_SFKZSJN1 0.977844208316135 0.977844208316135 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 8 3 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_VMMJYN8Z 0.05848504916208 0.05848504916208 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 5 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_Z6MC4N8D 1.47747787958061 1.47747787958061 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNK9--KCNK9 BS_ZRM0W01M 1.33708129485744 1.33708129485744 NA NA no change no change NA NA 8:139611337 8:139612674 ARRIBA other 12 3 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA -KCNMA1--BDH1 BS_TRKH2SPE 1.4194647668251 -1.23801290511568 NA NA no change no change NA NA 10:77403862 3:197522781 ARRIBA in-frame 4 0 high [INTERCHROMOSOMAL[chr10--chr3]],translocation KCNMA1 NA BDH1 NA NA NA NA NA NA -KCNMA1--KCNMA1 BS_SAA624A4 0.0871578487152721 0.0871578487152721 NA NA no change no change NA NA 10:77073097 10:77090510 ARRIBA frameshift 15 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr10:0.77Mb]],duplication/non-canonical_splicing KCNMA1 NA KCNMA1 NA NA NA NA NA NA -KCNMA1--KCNMA1 BS_TNRHHYNC 1.06792661579127 1.06792661579127 NA NA no change no change NA NA 10:77073097 10:77090510 ARRIBA frameshift 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr10:0.77Mb]],duplication/non-canonical_splicing KCNMA1 NA KCNMA1 NA NA NA NA NA NA -KCNMA1--KCNMA1 BS_VJVDJABP 4.01927831856291 4.01927831856291 NA NA differentially expressed differentially expressed NA NA 10:77073097 10:77090510 ARRIBA frameshift 21 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr10:0.77Mb]],duplication/non-canonical_splicing KCNMA1 NA KCNMA1 NA NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(105091)/ZMAT3(51727) BS_4Z2F4P9N 2.23910166244934 2.23910166244934 NA 5.81628244361385 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178965496 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(105091)/ZMAT3(51727) BS_ABYF92Z9 1.53151954975434 1.53151954975434 NA 3.17267343619683 no change no change NA differentially expressed 3:178801793 3:178965496 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(105091)/ZMAT3(51727) BS_AKRHBPNZ 5.76515336093635 5.76515336093635 NA 5.26830629131204 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178965496 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(105091)/ZMAT3(51727) BS_FJZPQZ2C 3.32390333268071 3.32390333268071 NA 5.14343126775691 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178965496 ARRIBA other 2 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(105091)/ZMAT3(51727) BS_WRQHPSXQ 3.57008227644488 3.57008227644488 NA 5.31954619361682 differentially expressed differentially expressed NA differentially expressed 3:178859489 3:178965496 ARRIBA other 2 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(105091)/ZMAT3(51727) BS_Z6BWR941 2.56708549743458 2.56708549743458 NA 5.10872061357751 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178965496 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(105091)/ZMAT3(51727) BS_ZZWMD6FA 1.34249775140036 1.34249775140036 NA 5.55394695268868 no change no change NA differentially expressed 3:178859489 3:178965496 ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(106549)/ZMAT3(50269) BS_YCREDZTJ 1.71543202016578 1.71543202016578 NA 4.96246248075032 no change no change NA differentially expressed 3:178801793 3:178966954 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(106553)/ZMAT3(50265) BS_JH29M4KG 1.29441029212173 1.29441029212173 NA 4.75482730485325 no change no change NA differentially expressed 3:178801793 3:178966958 ARRIBA other 1 1 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(106756)/ZMAT3(50062) BS_7P83Z28P 2.76432676185884 2.76432676185884 NA 5.91412382022355 differentially expressed differentially expressed NA differentially expressed 3:178859489 3:178967161 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(106960)/ZMAT3(49858) BS_SQX5E15Z 2.99370849940867 2.99370849940867 NA 5.58904543606824 differentially expressed differentially expressed NA differentially expressed 3:178748404 3:178967365 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(122060)/ZMAT3(34758) BS_FJWZ3M7V 2.80309807569214 2.80309807569214 NA 5.64441288018102 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178982465 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(122060)/ZMAT3(34758) BS_ZVZDDW2G 2.02578177322441 2.02578177322441 NA 6.08594533773451 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178982465 ARRIBA other 2 3 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_13CGKADW 1.89450412247854 1.89450412247854 NA 4.04177126225476 no change no change NA differentially expressed 3:178801793 3:179004184 ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_1G3WYEN3 2.91810386415709 2.91810386415709 NA 5.18631156454523 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:179004184 ARRIBA other 4 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_2ADZNNV4 3.39515369227565 3.39515369227565 NA 5.28162801445337 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:179004184 ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_42Y3YANN 0.947932319040221 0.947932319040221 NA 4.93408363570961 no change no change NA differentially expressed 3:178859489 3:179004184 ARRIBA other 2 2 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_47SJZ3PH 8.25186853564879 8.25186853564879 NA 6.34344939530523 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:179004184 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_5CMGN56B 2.44593665023629 2.44593665023629 NA 6.41697230171955 differentially expressed differentially expressed NA differentially expressed 3:178859489 3:179004184 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_5PEFNDCY 2.84164972084638 2.84164972084638 NA 4.18591649855002 differentially expressed differentially expressed NA differentially expressed 3:178859489 3:179004184 ARRIBA other 2 1 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_5PV5N4HQ 0.0827243608593618 0.0827243608593618 NA 5.08790486974521 no change no change NA differentially expressed 3:178859489 3:179004184 ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_60K3EQ9S 1.04873930604267 1.04873930604267 NA 2.30871819595578 no change no change NA differentially expressed 3:178859489 3:179004184 ARRIBA other 1 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_6P50QTPP 2.72533326163332 2.72533326163332 NA 5.36978037260532 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:179004184 ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_7XRN3CFX 3.17912452681832 3.17912452681832 NA 5.37832427465266 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:179004184 ARRIBA other 3 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_A1VEGWTR 2.52694173988779 2.52694173988779 NA 5.68776583023839 differentially expressed differentially expressed NA differentially expressed 3:178859489 3:179004184 ARRIBA other 4 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_AGS1HHGF 1.34249775140036 1.34249775140036 NA 2.30340633597867 no change no change NA differentially expressed 3:178801793 3:179004184 ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_CREQ97QC 1.19720367938592 1.19720367938592 NA 3.95308057475927 no change no change NA differentially expressed 3:178859489 3:179004184 ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_CTR5X93B 1.89450412247854 1.89450412247854 NA 5.32172721656966 no change no change NA differentially expressed 3:178801793 3:179004184 ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_D3YBV7KB 2.76432676185884 2.76432676185884 NA 5.37298767914067 differentially expressed differentially expressed NA differentially expressed 3:178859489 3:179004184 ARRIBA other 1 1 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_FJZPQZ2C 3.32390333268071 3.32390333268071 NA 5.14343126775691 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:179004184 ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_GYXSDZ56 3.1424433211777 3.1424433211777 NA 5.37512365279294 differentially expressed differentially expressed NA differentially expressed 3:178859489 3:179004184 ARRIBA other 2 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_HC5M8JTC 3.57008227644488 3.57008227644488 NA 4.82261741115795 differentially expressed differentially expressed NA differentially expressed 3:178859489 3:179004184 ARRIBA other 4 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_NB5XWMJT 1.1480746055369 1.1480746055369 NA 5.23356743109145 no change no change NA differentially expressed 3:178859489 3:179004184 ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_NPQJ20KX 4.94179242824619 4.94179242824619 NA 4.45498469989049 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:179004184 ARRIBA other 1 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_NRPG5K4K 1.7606437955947 1.7606437955947 NA 4.74938025777408 no change no change NA differentially expressed 3:178801793 3:179004184 ARRIBA other 2 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_QNAQGAV6 0.420199166831308 0.420199166831308 NA 4.17143474423242 no change no change NA differentially expressed 3:178801793 3:179004184 ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_T0RKFEKR 4.10142311138738 4.10142311138738 NA 5.02992567811854 differentially expressed differentially expressed NA differentially expressed 3:178748404 3:179004184 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_T55Y4Z0Y 0.474852851570664 0.474852851570664 NA 3.65336694435178 no change no change NA differentially expressed 3:178859489 3:179004184 ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_VMMJYN8Z 2.99370849940867 2.99370849940867 NA 5.56784614275255 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:179004184 ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_VR7FR1NE 4.91349988366755 4.91349988366755 NA 5.21999252043376 differentially expressed differentially expressed NA differentially expressed 3:178859489 3:179004184 ARRIBA other 4 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_W6AC5J3C 2.11191390012844 2.11191390012844 NA 6.80276558397267 differentially expressed differentially expressed NA differentially expressed 3:178859489 3:179004184 ARRIBA other 3 2 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_WRQHPSXQ 3.57008227644488 3.57008227644488 NA 5.31954619361682 differentially expressed differentially expressed NA differentially expressed 3:178859489 3:179004184 ARRIBA other 2 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_X2QTK3QD 0.253553764201962 0.253553764201962 NA 5.03907195448785 no change no change NA differentially expressed 3:178801793 3:179004184 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_ZVZDDW2G 2.02578177322441 2.02578177322441 NA 6.08594533773451 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:179004184 ARRIBA other 2 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_ZZWMD6FA 1.34249775140036 1.34249775140036 NA 5.55394695268868 no change no change NA differentially expressed 3:178801793 3:179004184 ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(49301)/ZMAT3(107517) BS_02NZT8CE 3.97242688469231 3.97242688469231 NA 5.40589660979093 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178909706 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(49301)/ZMAT3(107517) BS_7P83Z28P 2.76432676185884 2.76432676185884 NA 5.91412382022355 differentially expressed differentially expressed NA differentially expressed 3:178859489 3:178909706 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(49301)/ZMAT3(107517) BS_W7FP2G3F 2.11191390012844 2.11191390012844 NA 4.25877286043111 differentially expressed differentially expressed NA differentially expressed 3:178748404 3:178909706 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61471)/ZMAT3(95347) BS_GWCRMKE6 0.140145352829069 0.140145352829069 NA 3.96514681420422 no change no change NA differentially expressed 3:178801793 3:178921876 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_044XZ8ST 3.87404906738749 3.87404906738749 NA 5.25155603335731 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 4 2 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_0C7VZC0A 1.29441029212173 1.29441029212173 NA 4.728162770657 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_0WVJYM9R 1.04873930604267 1.04873930604267 NA 2.2909689550569 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_1KYGSMA7 3.43050102978048 3.43050102978048 NA 4.65071464776461 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_2ADZNNV4 3.39515369227565 3.39515369227565 NA 5.28162801445337 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 7 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_2KJ2YAZR 2.36395557217738 2.36395557217738 NA 5.01952023158142 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 5 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_3DCBDJAT 0.253553764201962 0.253553764201962 NA 4.31026561038629 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_42DY6WS7 1.43766499736899 1.43766499736899 NA 5.81358546730499 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_470DYRJQ 1.66991782258663 1.66991782258663 NA 4.05878940905804 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_49BQS7Z6 1.48475409303821 1.48475409303821 NA 3.39726535917224 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_4Y6BCYK5 1.98230336862839 1.98230336862839 NA 4.56426352643216 no change no change NA differentially expressed 3:178748404 3:178921910 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_52426AMF 1.7606437955947 1.7606437955947 NA 4.41257714275516 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 3 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_5YJEPPTP 0.845609380785476 0.845609380785476 NA 4.16715976364896 no change no change NA differentially expressed 3:178859489 3:178921910 ARRIBA other 3 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_6T4JGBGY 1.39024775204487 1.39024775204487 NA 0.457445616517859 no change no change NA no change 3:178801793 3:178921910 ARRIBA other 3 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_775HDFNY 3.06848229767789 3.06848229767789 NA 5.52994274128413 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 3 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_86Q14TZG 0.947932319040221 0.947932319040221 NA 3.39495227245332 no change no change NA differentially expressed 3:178680006 3:178921910 ARRIBA other 1 2 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_8RCR7Y4B 3.53545448075511 3.53545448075511 NA 5.15683603401177 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 5 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_9DFBHHB5 1.57796578584844 1.57796578584844 NA 5.84398604464194 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_A1VEGWTR 2.52694173988779 2.52694173988779 NA 5.68776583023839 differentially expressed differentially expressed NA differentially expressed 3:178859489 3:178921910 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_AKRHBPNZ 5.76515336093635 5.76515336093635 NA 5.26830629131204 differentially expressed differentially expressed NA differentially expressed 3:178748404 3:178921910 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_B741RZY9 2.11191390012844 2.11191390012844 NA 2.47644140590219 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_C6SKJG3N 3.35962177253723 3.35962177253723 NA 4.38679118223859 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 3 1 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_CGB2WS2A 1.24598057046694 1.24598057046694 NA 4.48161001350693 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 3 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_D3YBV7KB 2.76432676185884 2.76432676185884 NA 5.37298767914067 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 6 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_DEHJF4C7 5.27243304384706 5.27243304384706 NA 6.84999558797299 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 4 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_DV86M0Y7 3.25189898702839 3.25189898702839 NA 4.93471770737897 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_FAQQ0GCQ 3.57008227644488 3.57008227644488 NA 5.08671026982607 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_FEPRNEXX 0.420199166831308 0.420199166831308 NA 1.02710719812237 no change no change NA no change 3:178748404 3:178921910 ARRIBA other 1 2 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_FJZPQZ2C 3.32390333268071 3.32390333268071 NA 5.14343126775691 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_FWMJPKCV 0.197085828773875 0.197085828773875 NA 4.91051186477438 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 4 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_GPEGRCCT 4.47435738015279 4.47435738015279 NA 6.02663507038299 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 4 1 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_GYXSDZ56 3.1424433211777 3.1424433211777 NA 5.37512365279294 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 4 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_H1XPVS9A 4.65342948246555 4.65342948246555 NA 5.79009185581844 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 4 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_HC5M8JTC 3.57008227644488 3.57008227644488 NA 4.82261741115795 differentially expressed differentially expressed NA differentially expressed 3:178748404 3:178921910 ARRIBA other 2 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_HQ5BJ6MW 2.19696934722996 2.19696934722996 NA 4.87116996703715 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 4 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_HV8PFRBR 2.95601118876089 2.95601118876089 NA 5.46686932788405 differentially expressed differentially expressed NA differentially expressed 3:178748404 3:178921910 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_HX0S30NE 4.03723068087964 4.03723068087964 NA 5.67450450378112 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 4 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_JFR750KD 1.66991782258663 1.66991782258663 NA 5.56536967397658 no change no change NA differentially expressed 3:178748404 3:178921910 ARRIBA other 1 1 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_JKXA3FQC 1.53151954975434 1.53151954975434 NA 4.48387934743448 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 3 1 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_JTMXAMB7 0.896963188075202 0.896963188075202 NA 0.647119804458318 no change no change NA no change 3:178801793 3:178921910 ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_JVA2NQFF 3.06848229767789 3.06848229767789 NA 6.56870709971908 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_KK5C8VCK 0.896963188075202 0.896963188075202 NA 2.22785898778202 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_KX6J8TRK 1.24598057046694 1.24598057046694 NA 4.35836155019295 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_MKM0EEN1 1.6240971297858 1.6240971297858 NA 0.904565824403209 no change no change NA no change 3:178801793 3:178921910 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_MM20BVW9 -0.457110376478135 -0.457110376478135 NA 3.57800609901942 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_MY9D8XZ1 2.15457452368054 2.15457452368054 NA 5.26050314416939 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 5 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_N6NE6B3W -0.647011459858573 -0.647011459858573 NA 0.898435449543546 no change no change NA no change 3:178801793 3:178921910 ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_NRPG5K4K 1.7606437955947 1.7606437955947 NA 4.74938025777408 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 8 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_NS7GSHB9 2.99370849940867 2.99370849940867 NA 5.16785682731771 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 1 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_P4NX9MPA 4.88508920703625 4.88508920703625 NA 5.44358986216678 differentially expressed differentially expressed NA differentially expressed 3:178748404 3:178921910 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_PQ6QEVE8 1.24598057046694 1.24598057046694 NA 4.73913569327474 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_QNAQGAV6 0.420199166831308 0.420199166831308 NA 4.17143474423242 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 5 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_R244Z0WX 5.32601085742159 5.32601085742159 NA 4.92773426435537 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 5 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_RQSKD7PN 1.71543202016578 1.71543202016578 NA 4.52364265779542 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 3 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_S1KK7XRH 3.46566569289122 3.46566569289122 NA 5.15741726037518 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 3 1 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_S458NMKH 2.72533326163332 2.72533326163332 NA 5.87797984001692 differentially expressed differentially expressed NA differentially expressed 3:178748404 3:178921910 ARRIBA other 1 1 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_SDA4RMMG 0.793865046496602 0.793865046496602 NA 4.36549861834136 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 4 2 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_SHMC4902 0.309556937690878 0.309556937690878 NA 5.15799835477665 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 2 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_SQX5E15Z 2.99370849940867 2.99370849940867 NA 5.58904543606824 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 4 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_TRKH2SPE 3.10556330044356 3.10556330044356 NA 1.45354777597111 differentially expressed differentially expressed NA no change 3:178801793 3:178921910 ARRIBA other 3 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_VMMJYN8Z 2.99370849940867 2.99370849940867 NA 5.56784614275255 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 6 3 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_VR7FR1NE 4.91349988366755 4.91349988366755 NA 5.21999252043376 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 5 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_W3R88RFP 7.1826925653258 7.1826925653258 NA 5.44255028852118 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 4 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_W4HGV6E7 0.420199166831308 0.420199166831308 NA 3.18274994637882 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_X16PENSA 0.474852851570664 0.474852851570664 NA 4.89059401888159 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_X4X1SFSE 3.74062622063161 3.74062622063161 NA 3.50146894799326 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 1 1 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_XF0ZX2B3 0.420199166831308 0.420199166831308 NA 2.09676953358477 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 4 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_YCREDZTJ 1.71543202016578 1.71543202016578 NA 4.96246248075032 no change no change NA differentially expressed 3:178748404 3:178921910 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_YVMEEBKC 2.15457452368054 2.15457452368054 NA 4.96120785803879 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 1 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_Z0AVVB1V 5.93804988680534 5.93804988680534 NA 4.79598418144397 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 4 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_Z6BWR941 2.56708549743458 2.56708549743458 NA 5.10872061357751 differentially expressed differentially expressed NA differentially expressed 3:178859489 3:178921910 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_Z7Y2466H 4.62390949183546 4.62390949183546 NA 4.64787949900582 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_ZZWMD6FA 1.34249775140036 1.34249775140036 NA 5.55394695268868 no change no change NA differentially expressed 3:178801793 3:178921910 ARRIBA other 2 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61538)/ZMAT3(95280) BS_1G3WYEN3 2.91810386415709 2.91810386415709 NA 5.18631156454523 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921943 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61538)/ZMAT3(95280) BS_KVV7001W 1.85017597112302 1.85017597112302 NA 6.4237137175981 no change no change NA differentially expressed 3:178801793 3:178921943 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61538)/ZMAT3(95280) BS_PZVHMSYN 5.51027910139028 5.51027910139028 NA 5.42795174663105 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178921943 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(61538)/ZMAT3(95280) BS_VW85Q4XJ 3.57008227644488 3.57008227644488 NA 5.85197317751864 differentially expressed differentially expressed NA differentially expressed 3:178748404 3:178921943 ARRIBA other 1 1 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(83445)/ZMAT3(73373) BS_CS170P7T 10.6300317891733 10.6300317891733 NA 6.13718368888775 differentially expressed differentially expressed NA differentially expressed 3:178748404 3:178943850 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB2-AS1--KCNMB2-AS1(83445)/ZMAT3(73373) BS_TMTV769C 3.32390333268071 3.32390333268071 NA 3.70000697260346 differentially expressed differentially expressed NA differentially expressed 3:178801793 3:178943850 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA -KCNMB4--EPYC BS_Q9V7A95C 2.48017935148198 121.951019753127 NA NA differentially expressed differentially expressed NA NA 12:70434266 12:91002578 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr12:20.53Mb]],inversion KCNMB4 NA EPYC NA NA NA NA NA NA -KCNN1--ZNF729(3526)/AC011494.1(41887) BS_61E80SD6 0.263720893168801 83.617561934771 NA NA no change differentially expressed NA NA 19:17986102 19:22320702 ARRIBA frameshift 5 0 medium [],inversion KCNN1 NA ZNF729 AC011494.1 NA TranscriptionFactor NA NA NA -KCNN3--AC105411.1 BS_49FQXT2E 3.31379206636177 NA NA NA differentially expressed NA NA NA 1:154771975 16:80203015 ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr1--chr16]],translocation/5'-5' KCNN3 NA AC105411.1 NA NA NA NA NA NA -KCNQ3--KCNQ3 BS_KVNGNETA 1.25347253820797 1.25347253820797 NA NA no change no change NA NA 8:132170333 8:132186180 ARRIBA in-frame 15 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.36Mb]],duplication/non-canonical_splicing KCNQ3 NA KCNQ3 NA NA NA NA NA NA -KCNQ3--RPL23AP56(156245)/LINC01591(98607) BS_XG0DBWVT 1.64932954937505 1.51145199618598 NA 0.916992120414595 no change no change NA no change 8:132480147 8:135135524 ARRIBA frameshift 16 0 high [],duplication KCNQ3 NA RPL23AP56 LINC01591 NA NA NA NA NA -KCNQ5--COX18 BS_P9JP6JFA 0.589596245877429 0.296131813395344 NA NA no change no change NA NA 6:73133641 4:73061920 ARRIBA frameshift 4 0 low [INTERCHROMOSOMAL[chr6--chr4]],translocation KCNQ5 NA COX18 NA Oncogene NA NA NA NA -KCNS3--MYCNOS BS_P0QF87WC 0.282227030815504 3.70486295898164 NA NA no change differentially expressed NA NA 2:17878950 2:15928979 ARRIBA other 11 0 medium [INTRACHROMOSOMAL[chr2:1.94Mb]],inversion KCNS3 NA MYCNOS NA NA NA NA NA NA -KCNS3--MYCNOS BS_WAXJY4XQ 2.10411661518423 5.08662413187929 NA NA differentially expressed differentially expressed NA NA 2:17878950 2:15928979 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr2:1.94Mb]],inversion KCNS3 NA MYCNOS NA NA NA NA NA NA -KCNS3--MYCNOS BS_WJ9H4NZZ 2.66171741077811 8.6533598469753 NA NA differentially expressed differentially expressed NA NA 2:17878950 2:15928979 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr2:1.94Mb]],inversion KCNS3 NA MYCNOS NA NA NA NA NA NA -KCNS3--MYCNUT BS_P0QF87WC 0.282227030815504 11.5370833557013 NA NA no change differentially expressed NA NA 2:17878950 2:15928979 ARRIBA other 9 0 medium [INTRACHROMOSOMAL[chr2:1.94Mb]],inversion/3'-3' KCNS3 NA MYCNUT NA NA NA NA NA NA -KCNS3--MYCNUT BS_WAXJY4XQ 2.10411661518423 6.66212336947028 NA NA differentially expressed differentially expressed NA NA 2:17878950 2:15928979 ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr2:1.94Mb]],inversion/3'-3' KCNS3 NA MYCNUT NA NA NA NA NA NA -KCNS3--MYCNUT BS_WJ9H4NZZ 2.66171741077811 1.89062352023889 NA NA differentially expressed no change NA NA 2:17878950 2:15928979 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr2:1.94Mb]],inversion/3'-3' KCNS3 NA MYCNUT NA NA NA NA NA NA -KCNT2--KCNT2 BS_1G3WYEN3 1.67956881911918 1.67956881911918 NA NA no change no change NA NA 1:196373140 1:196479238 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA -KCNT2--KCNT2 BS_1T19NFJ8 0.603700123592372 0.603700123592372 NA NA no change no change NA NA 1:196373140 1:196479238 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA -KCNT2--KCNT2 BS_6MY8W3H0 0.766242816555786 0.766242816555786 NA NA no change no change NA NA 1:196373140 1:196479238 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA -KCNT2--KCNT2 BS_912NX4Y0 1.77510902105127 1.77510902105127 NA NA no change no change NA NA 1:196373140 1:196469068 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA -KCNT2--KCNT2 BS_AJ6X83G5 3.14682080395776 3.14682080395776 NA NA differentially expressed differentially expressed NA NA 1:196373140 1:196479238 ARRIBA frameshift 10 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA -KCNT2--KCNT2 BS_AMQGM1V9 3.11327832466395 3.11327832466395 NA NA differentially expressed differentially expressed NA NA 1:196373140 1:196479238 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA -KCNT2--KCNT2 BS_DVCQ8XDZ 2.37110539623734 2.37110539623734 NA NA differentially expressed differentially expressed NA NA 1:196373140 1:196479238 ARRIBA frameshift 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA -KCNT2--KCNT2 BS_HCP5C912 1.04486307320538 1.04486307320538 NA NA no change no change NA NA 1:196373140 1:196479238 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA -KCNT2--KCNT2 BS_K5802F84 1.62227194512976 1.62227194512976 NA NA no change no change NA NA 1:196373140 1:196479238 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA -KCNT2--KCNT2 BS_NDN62H0S 5.62802604956879 5.62802604956879 NA NA differentially expressed differentially expressed NA NA 1:196373140 1:196479238 ARRIBA frameshift 18 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA -KCNT2--KCNT2 BS_NVKGSMXS 2.74784877916361 2.74784877916361 NA NA differentially expressed differentially expressed NA NA 1:196373140 1:196479238 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA -KCNT2--KCNT2 BS_SBFNFZ8B 3.22662463731375 3.22662463731375 NA NA differentially expressed differentially expressed NA NA 1:196373140 1:196479238 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA -KCNT2--KCNT2 BS_TG93XC55 2.45802043850897 2.45802043850897 NA NA differentially expressed differentially expressed NA NA 1:196373140 1:196479238 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA -KCNT2--KCNT2 BS_Y0PCBNJV 2.00043186533507 2.00043186533507 NA NA differentially expressed differentially expressed NA NA 1:196373140 1:196479238 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA -KCNT2--LAMC2 BS_WKESC3XN 1.87501302299883 -0.0967726006357159 NA NA no change no change NA NA 1:196608215 1:183207881 ARRIBA frameshift 14 0 high [INTRACHROMOSOMAL[chr1:12.98Mb]],inversion KCNT2 NA LAMC2 NA NA NA NA NA NA -KCTD16--KCTD16 BS_9NJHQE9F 0.79502438014473 0.79502438014473 NA NA no change no change NA NA 5:144207546 5:144206389 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.31Mb]],duplication/non-canonical_splicing KCTD16 NA KCTD16 NA NA NA NA NA NA -KCTD16--RN7SKP246(222946)/NAMPTP2(243237) BS_PGHK1JRW 0.517362571399741 -0.091257615046079 NA 2.23757350385112 no change no change NA differentially expressed 5:144207546 5:144758616 ARRIBA frameshift 2 0 medium [],deletion KCTD16 NA RN7SKP246 NAMPTP2 NA NA NA NA NA -KCTD20--AL136126.1 BS_6JHXXVR7 4.37395238562746 NA NA NA differentially expressed NA NA NA 6:36443111 11:33236999 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr6--chr11]],translocation KCTD20 NA AL136126.1 NA NA NA NA NA NA -KCTD20--HIPK3 BS_6JHXXVR7 4.37395238562746 9.202590842814 NA NA differentially expressed differentially expressed NA NA 6:36443111 11:33286413 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr6--chr11]],translocation KCTD20 NA HIPK3 NA NA Kinase, Kinase NA NA NA -KCTD8--NTRK2 BS_2AR3AP0N 0.667697976144462 1.29478640701668 NA NA no change no change NA NA 4:44447563 9:84867243 ARRIBA in-frame 11 0 high [INTERCHROMOSOMAL[chr4--chr9]],translocation KCTD8 NA NTRK2 NA NA Oncogene, Kinase NA NA NA -KCTD8--NTRK2 BS_2AR3AP0N 0.667697976144462 1.29478640701668 NA NA no change no change NA NA 4:44293404 9:84867243 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr4--chr9]],translocation KCTD8 NA NTRK2 NA NA Oncogene, Kinase NA NA NA -KCTD8--NTRK2 BS_2AR3AP0N 0.667697976144462 1.29478640701668 NA NA no change no change NA NA 4:44293404 9:84861040 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr4--chr9]],translocation KCTD8 NA NTRK2 NA NA Oncogene, Kinase NA NA NA -KCTD8--NTRK2 BS_2AR3AP0N 0.667697976144462 1.29478640701668 NA NA no change no change NA NA 4:44293799 9:84867243 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr4--chr9]],translocation KCTD8 NA NTRK2 NA NA Oncogene, Kinase NA NA NA -KDM2A--AP001317.1(401342)/AP003038.1(32534) BS_CZ3ER8DY -0.466496744187175 NA NA NA no change NA NA NA 11:67231960 11:98532540 ARRIBA frameshift 8 1 high [],deletion KDM2A NA AP001317.1 AP003038.1 TranscriptionFactor NA NA NA NA -KDM4C--RXRA BS_A0DYVX9J 1.69501395012742 2.08644933112556 NA NA no change differentially expressed NA NA 9:7049200 9:134401632 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:127.14Mb]],deletion KDM4C NA RXRA NA Oncogene TranscriptionFactor NA NA NA -KDM6A--KDM6A BS_NDRDM2A9 0.221303557100888 0.221303557100888 NA NA no change no change NA NA X:44961392 X:44956425 ARRIBA frameshift 4 0 medium [SELFIE,INTRACHROMOSOMAL[chrX:0.24Mb]],duplication KDM6A NA KDM6A NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -KHDRBS3--AC013546.1 BS_WMEHNDSK 3.16108391891741 NA NA NA differentially expressed NA NA NA 8:135457954 8:136515966 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr8:0.83Mb]],deletion KHDRBS3 NA AC013546.1 NA NA NA NA NA NA -KHSRP--SH3GL1 BS_K17VQECG 1.04826516423697 1.31806259131186 NA NA no change no change NA NA 19:6422340 19:4366994 ARRIBA frameshift 10 0 high [INTRACHROMOSOMAL[chr19:2.01Mb]],deletion KHSRP NA SH3GL1 NA NA CosmicCensus, Oncogene NA NA NA -KHSRP--SH3GL1 BS_K17VQECG 1.04826516423697 1.31806259131186 NA NA no change no change NA NA 19:6424453 19:4366994 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr19:2.01Mb]],deletion KHSRP NA SH3GL1 NA NA CosmicCensus, Oncogene NA NA NA -KIAA0232--SORCS2 BS_W4DB5RP1 1.16584711144812 0.139338127489927 NA NA no change no change NA NA 4:6824684 4:7396288 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr4:0.31Mb]],deletion KIAA0232 NA SORCS2 NA NA NA NA NA NA -KIAA0319--KIAA0319 BS_2A5R9MEJ -0.0512972050407049 -0.0512972050407049 NA NA no change no change NA NA 6:24568781 6:24583702 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing KIAA0319 NA KIAA0319 NA NA NA NA NA NA -KIAA0319--KIAA0319 BS_ET8CJXSF -0.690783266403806 -0.690783266403806 NA NA no change no change NA NA 6:24568781 6:24583702 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing KIAA0319 NA KIAA0319 NA NA NA NA NA NA -KIAA0319--KIAA0319 BS_F6Z5HFWH -0.351597170405674 -0.351597170405674 NA NA no change no change NA NA 6:24568781 6:24583702 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing KIAA0319 NA KIAA0319 NA NA NA NA NA NA -KIAA0319--KIAA0319 BS_J71N7D09 -0.0191306292108188 -0.0191306292108188 NA NA no change no change NA NA 6:24568781 6:24583702 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing KIAA0319 NA KIAA0319 NA NA NA NA NA NA -KIAA0319--KIAA0319 BS_Z85M2R3N -0.165309982629217 -0.165309982629217 NA NA no change no change NA NA 6:24568781 6:24583702 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing KIAA0319 NA KIAA0319 NA NA NA NA NA NA -KIAA0408--NUS1(196728)/SLC35F1(158) BS_PKW05VZV -1.47946943021962 -0.892083451505194 NA 0.885002690411816 no change no change NA no change 6:127453844 6:117907368 ARRIBA frameshift 2 0 low [],inversion KIAA0408 NA NUS1 SLC35F1 NA NA NA NA NA -KIAA0586--KIAA0586 BS_7G42J2SK 1.67381582832529 1.67381582832529 NA NA no change no change NA NA 14:58512627 14:58450579 ARRIBA in-frame 3 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing KIAA0586 NA KIAA0586 NA NA NA NA NA NA -KIAA0586--KIAA0586 BS_CGB2WS2A 0.490266483059627 0.490266483059627 NA NA no change no change NA NA 14:58512627 14:58482513 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing KIAA0586 NA KIAA0586 NA NA NA NA NA NA -KIAA0586--KIAA0586 BS_CXVJK2FY 1.26491671947601 1.26491671947601 NA NA no change no change NA NA 14:58512627 14:58450579 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing KIAA0586 NA KIAA0586 NA NA NA NA NA NA -KIAA0586--KIAA0586 BS_G63HYD6N 1.42246264049865 1.42246264049865 NA NA no change no change NA NA 14:58512627 14:58474607 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing KIAA0586 NA KIAA0586 NA NA NA NA NA NA -KIAA0586--KIAA0586 BS_ZR96A4FH -0.0703098049977535 -0.0703098049977535 NA NA no change no change NA NA 14:58512627 14:58482513 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing KIAA0586 NA KIAA0586 NA NA NA NA NA NA -KIAA0825--KIAA0825 BS_1G3WYEN3 1.28745114693992 1.28745114693992 NA NA no change no change NA NA 5:94439982 5:94484930 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.47Mb]],duplication/non-canonical_splicing KIAA0825 NA KIAA0825 NA NA NA NA NA NA -KIAA0825--SLC22A4 BS_H4B5Y6S0 2.65996587253697 -0.509004446782058 NA NA differentially expressed no change NA NA 5:94384368 5:132340673 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr5:37.68Mb]],duplication/5'-5' KIAA0825 NA SLC22A4 NA NA NA NA NA NA -KIAA1107--BTBD8 BS_XJTW0P8P 1.81794170050012 0.77393587085644 NA NA no change no change NA NA 1:92223676 1:92139350 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.02Mb],LOCAL_REARRANGEMENT:+:[16103]],duplication KIAA1107 NA BTBD8 NA NA NA NA NA NA -KIAA1107--BTBD8 BS_XJTW0P8P 1.81794170050012 0.77393587085644 NA NA no change no change NA NA 1:92182595 1:92139350 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.02Mb],LOCAL_REARRANGEMENT:+:[16103]],duplication KIAA1107 NA BTBD8 NA NA NA NA NA NA -KIAA1107--BTBD8 BS_XJTW0P8P 1.81794170050012 0.77393587085644 NA NA no change no change NA NA 1:92171460 1:92141115 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.02Mb],LOCAL_REARRANGEMENT:+:[16103]],duplication KIAA1107 NA BTBD8 NA NA NA NA NA NA -KIAA1191--SOX30 BS_YBJBSRHV -0.766879780174756 28.3022598104317 NA NA no change differentially expressed NA NA 5:176350613 5:157648896 ARRIBA frameshift 1 3 high [INTRACHROMOSOMAL[chr5:18.67Mb]],deletion KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA -KIAA1191--SOX30 BS_YBJBSRHV -0.766879780174756 28.3022598104317 NA NA no change differentially expressed NA NA 5:176352622 5:157648896 ARRIBA in-frame 1 3 high [INTRACHROMOSOMAL[chr5:18.67Mb]],deletion KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA -KIAA1191--SOX30 BS_YBJBSRHV -0.766879780174756 28.3022598104317 NA NA no change differentially expressed NA NA 5:176361602 5:157648896 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr5:18.67Mb]],deletion KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA -KIAA1191--SOX30 BS_YBJBSRHV -0.766879780174756 28.3022598104317 NA NA no change differentially expressed NA NA 5:176350613 5:157638722 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr5:18.67Mb]],deletion KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA -KIAA1191--SOX30 BS_YBJBSRHV -0.766879780174756 28.3022598104317 NA NA no change differentially expressed NA NA 5:176350181 5:157664758 ARRIBA other 1 4 medium [INTRACHROMOSOMAL[chr5:18.67Mb]],deletion KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA -KIAA1191--SOX30 BS_YBJBSRHV -0.766879780174756 28.3022598104317 NA NA no change differentially expressed NA NA 5:176361602 5:157626721 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:18.67Mb]],deletion KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA -KIAA1324L--KIAA1324L BS_G63HYD6N 0.0971816400838423 0.0971816400838423 NA NA no change no change NA NA 7:86925528 7:86942104 ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.18Mb]],duplication/non-canonical_splicing KIAA1324L NA KIAA1324L NA NA NA NA NA NA -KIAA1456(1344)/RNU6-842P(11503)--KIAA1456 BS_N6NE6B3W 2.40563006212369 2.40563006212369 NA NA differentially expressed differentially expressed NA NA 8:13032847 8:13031114 ARRIBA other 25 3 medium [],duplication KIAA1456 RNU6-842P KIAA1456 NA NA NA NA NA NA -KIAA1549--BRAF BS_063ERW0R 4.75315897131261 2.57334733194686 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 6 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_06AMMCXR 3.98654285462887 2.21383711271607 NA NA differentially expressed differentially expressed NA NA 7:138867975 7:140787584 ARRIBA in-frame 9 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_0J9SHHSC 5.98105169686657 1.57495446684748 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 24 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_0SCXXM6N 4.52427206746781 1.77370705633981 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 4 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_0WVJYM9R 1.93972473335168 1.3781986787396 NA NA no change no change NA NA 7:138844317 7:140783157 ARRIBA in-frame 5 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_17WYVEEC 5.32195790374399 2.042377140032 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 4 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_1KYGSMA7 4.58457187095883 2.14947466664326 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140781693 ARRIBA in-frame 13 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_1ZVXF5FE 3.84344927061632 1.63525298468285 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 4 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_21RE8W46 3.18105865603248 1.07239496488021 NA NA differentially expressed no change NA NA 7:138861139 7:140781693 ARRIBA in-frame 1 1 low [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_2ADZNNV4 4.11361394254672 1.02400854955345 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 5 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_2WPQ8YCW 6.0061826045331 1.4220656718871 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 5 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_3Q0GTSYH 4.3646924490107 2.18915876378451 NA NA differentially expressed differentially expressed NA NA 7:138867975 7:140787584 ARRIBA in-frame 4 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_42DY6WS7 4.4469625790677 2.12508155938076 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 5 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_42Y3YANN 3.58320349350045 1.81499155914605 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 6 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_42Y3YANN 3.58320349350045 1.81499155914605 NA NA differentially expressed no change NA NA 7:138867975 7:140783157 ARRIBA frameshift 1 0 low [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_470DYRJQ 3.16013812458463 2.55868169515212 NA NA differentially expressed differentially expressed NA NA 7:138867975 7:140787584 ARRIBA in-frame 3 1 medium [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_49852ZBH 3.6153571487341 1.66741954153585 NA NA differentially expressed no change NA NA 7:138861139 7:140781693 ARRIBA in-frame 14 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_4A45GGSW 4.28540418279215 2.07432534710027 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 7 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_4BWB0FA0 3.93336829838858 1.08123295889003 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 5 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_4C4MZ4NT 4.4206953895488 1.0670740521233 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 6 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_4HQ3T2NC 4.88309780934886 1.72642059144756 NA NA differentially expressed no change NA NA 7:138861139 7:140781693 ARRIBA in-frame 8 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_4Y6BCYK5 3.8759063500538 1.08475764845914 NA NA differentially expressed no change NA NA 7:138861139 7:140781693 ARRIBA in-frame 9 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_52426AMF 3.36631672588848 2.26831363466005 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 4 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_52DAPP1Y 5.11139081784326 2.28517195905204 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 6 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_53GQKVEX 4.14008614751619 0.936992729332076 NA NA differentially expressed no change NA NA 7:138867975 7:140781693 ARRIBA in-frame 12 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_55P8HPYD 5.19798467343819 1.96317248458175 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 2 0 low [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_5PEFNDCY 4.18651944297626 2.28220689072008 NA NA differentially expressed differentially expressed NA NA 7:138840133 7:140781693 ARRIBA in-frame 14 4 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_5PV5N4HQ 5.29531862047146 1.88082575995459 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 6 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_5YJEPPTP 4.16630257839045 1.6753839054886 NA NA differentially expressed no change NA NA 7:138861139 7:140781693 ARRIBA in-frame 8 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_66ABA973 4.76015522655213 2.10255647412996 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 4 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_66HQ3E4Z 5.39297326608578 1.52428246004081 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 14 4 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_6N3AFF66 5.48723507174155 2.24930854337418 NA NA differentially expressed differentially expressed NA NA 7:138844317 7:140783157 ARRIBA in-frame 14 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_775HDFNY 4.011210110761 2.11760032008653 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 6 4 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_7P83Z28P 3.67159500612655 2.30874127548758 NA NA differentially expressed differentially expressed NA NA 7:138867975 7:140787584 ARRIBA in-frame 11 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_7Z93ZYMS 3.8759063500538 1.76737958524981 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 9 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_8J3B6ZB6 4.51409051898434 1.73029500935129 NA NA differentially expressed no change NA NA 7:138844317 7:140783157 ARRIBA in-frame 22 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_8VAZSJEN 3.92704340161532 1.57077871956464 NA NA differentially expressed no change NA NA 7:138844317 7:140783157 ARRIBA in-frame 14 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_9Q6Z6VJC 5.38928159274473 1.42356191819153 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 7 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_9SJWWYQ4 4.23217148914235 1.73158487684077 NA NA differentially expressed no change NA NA 7:138861139 7:140781693 ARRIBA in-frame 5 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_A13BMEF5 5.52790558109922 1.9481244445974 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 7 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_A1VEGWTR 5.12974520228616 1.83839423443223 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 14 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_B7X8VXQ3 3.4392924056729 1.73287394341899 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 3 0 medium [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_BN986DF6 4.88309780934886 2.04902757281215 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 4 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_BPSTSCBJ 4.95123809660659 1.57217156876652 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 6 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_C6SKJG3N 2.72853524505195 1.3365065934867 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 5 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_C7A2TYAC 5.19004500577718 1.64737392402353 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 17 6 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_CB6VK7PB 3.85972634094652 1.62577641680774 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 8 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_CGB2WS2A 4.42596920945418 2.16836698601632 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 3 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_DPF1CX0G 4.98789137646865 2.27626401932161 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 8 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_DSS3S5XD 5.91033583648805 1.47963468210677 NA NA differentially expressed no change NA NA 7:138844317 7:140783157 ARRIBA in-frame 47 7 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_DV86M0Y7 3.06612187130819 2.52991391394521 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 3 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_EFEZB0ZH 4.73676387921309 0.846169537412455 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 6 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_EN2VK7NY 2.90949425258426 1.23256289199418 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 6 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_ET8CJXSF 4.11065658041514 1.97696683206092 NA NA differentially expressed no change NA NA 7:138844317 7:140783157 ARRIBA in-frame 14 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_F8N6CFQE 4.011210110761 1.97008111544165 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 7 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_FJWZ3M7V 4.46000142918069 1.50567596420849 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 16 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_GCA4GET3 4.26311757300539 3.07695507075687 NA NA differentially expressed differentially expressed NA NA 7:138869538 7:140794467 ARRIBA in-frame 8 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_GHNJ4CYC 4.6484190399533 1.86999735237559 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 7 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_GYA4V1RD 3.93967848608631 1.84573007831092 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 7 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_GYXSDZ56 3.42409136038555 1.39646309265099 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 6 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_H3FE3TH9 4.90747296253817 2.02117577786561 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 7 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_H8A9PSYA 4.73676387921309 2.30091453046798 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 7 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_HQ5BJ6MW 4.011210110761 1.84328767607918 NA NA differentially expressed no change NA NA 7:138853891 7:140792944 ARRIBA other 1 1 medium [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_HQ5BJ6MW 4.011210110761 1.84328767607918 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 1 1 medium [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_HSHN8PBB 5.56624555663444 0.927517397239808 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 3 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_JMHG7GCN 3.93336829838858 2.30580970287874 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 5 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_JVA2NQFF 5.71112828499369 2.45483578017908 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 17 14 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_JWSR581E 3.94597403296416 1.68067655757769 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 11 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_K2VYFVKZ 4.70842545466112 1.15742652535968 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 7 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_K7MVS0Z7 4.99003210990286 1.68859032189065 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 9 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_KEA474HN 4.14885313248434 2.09065935470838 NA NA differentially expressed differentially expressed NA NA 7:138844317 7:140783157 ARRIBA in-frame 21 7 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_M4TTKPNR 3.53241683330873 1.16591056519129 NA NA differentially expressed no change NA NA 7:138861139 7:140781693 ARRIBA in-frame 11 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_M8M56Z4Y 4.62403990481821 0.673237602007822 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 5 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_MBSTWZA6 3.57240037576415 1.49703178104305 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 12 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_MF9X3PKH 3.76393062789238 1.25377214643967 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 9 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_N1E0H8YQ 3.64362177396909 1.75466649189317 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 5 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_NB5XWMJT 3.6958372304439 0.761503678834143 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 10 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_NPQJ20KX 4.04779555698381 0.908435997674997 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 2 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_NQB91P48 5.5419101514765 1.74700109860292 NA NA differentially expressed no change NA NA 7:138844317 7:140783157 ARRIBA in-frame 27 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_NRFQEQKP 4.53947311275515 2.41161208910699 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 6 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_NRPG5K4K 3.74706681048251 1.42655117955396 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 11 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_PEP9NZXN 4.87194539131777 2.30091453046798 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 17 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_PK18H7E7 3.94597403296416 1.62984310108074 NA NA differentially expressed no change NA NA 7:138867975 7:140781693 ARRIBA in-frame 9 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_PQ7CQFYR 3.80729225545591 1.01127763659386 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 2 0 low [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_Q3TBCK4V 3.97723451106741 1.8951763354662 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 2 0 low [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_Q79NP5YY 3.86944591965154 2.06665860580848 NA NA differentially expressed differentially expressed NA NA 7:138867975 7:140787584 ARRIBA in-frame 8 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_QH82PBMB 3.49554969702731 2.38730875748618 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 5 0 medium [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_QRNSKFMS 3.79402386966635 1.85304009169995 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 2 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_R244Z0WX 2.36551031739424 0.923715122078912 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 2 0 medium [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_RGSMX7QD 4.16919994063811 2.59727891288935 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 10 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_RVSEDNJ4 5.37817634059716 2.95900585235885 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 2 0 low [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_RWJZFTP9 5.54365565136759 1.46355824961763 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 19 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_S1KK7XRH 3.56517432758634 1.70563401821636 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 11 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_S4V9E1XJ 3.5903817502984 1.93296653308728 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 3 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_S4V9E1XJ 3.5903817502984 1.93296653308728 NA NA differentially expressed no change NA NA 7:138867975 7:140726516 ARRIBA frameshift 2 0 low [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_S50KQEXV 4.70129436123432 2.06775558953679 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 3 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_SDA4RMMG 3.93336829838858 1.70171325849099 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 1 2 medium [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_SDZY6RZ3 4.52173025979985 2.3994959866819 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 3 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_SHMC4902 5.0846577987738 1.87481695212006 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 9 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_SXRS2P6T 3.70959330293431 1.55679858823304 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 14 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_T0RKFEKR 2.77733834999502 1.56938493525077 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 2 0 medium [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_T1W4JA94 4.43123279885865 1.65942450601597 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 5 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_V0Q1G94N 3.76393062789238 1.94347224846006 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 2 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_V3REENH9 3.01343323546446 0.896902403246304 NA NA differentially expressed no change NA NA 7:138867975 7:140781693 ARRIBA in-frame 3 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_V72GX2AZ 3.53607614537665 1.88920897965447 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 5 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_V89HGTET 3.04867242540208 1.28278562318281 NA NA differentially expressed no change NA NA 7:138861139 7:140781693 ARRIBA in-frame 6 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_VARR255N 2.90026506175739 1.55960215605618 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 3 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_VP3C8WZT 4.11951901449022 1.62306086160364 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 10 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_VR7FR1NE 3.95852147491727 1.59157396847229 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 8 4 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_VW85Q4XJ 3.00009964850016 1.49124893146122 NA NA differentially expressed no change NA NA 7:138867975 7:140781693 ARRIBA in-frame 15 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_W97QQYKQ 3.90159534181415 1.52000343071927 NA NA differentially expressed no change NA NA 7:138894342 7:140781693 ARRIBA in-frame 13 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_WG203ECV 4.24628165867839 1.20116970208134 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 4 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_X16PENSA 4.35929805461543 1.50567596420849 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 17 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_X9EGD530 4.45218564032844 0.616654347835318 NA NA differentially expressed no change NA NA 7:138861139 7:140781693 ARRIBA in-frame 9 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_XGSA3GQE 4.67498549548679 1.8760201058237 NA NA differentially expressed no change NA NA 7:138867975 7:140787584 ARRIBA in-frame 6 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_XKKB4MZV 5.41135666626338 1.52713025425626 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 3 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_Y0PCBNJV 5.2490338395666 1.94579964966518 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 11 7 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_YVMEEBKC 4.57461450386824 2.042377140032 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 15 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_YY5B2XDD 4.03261152470672 2.37694030994884 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 3 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_YZ2Z1Q6Y 4.11656808490397 1.75211450428537 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 3 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_Z0AVVB1V 3.08777704999453 1.63525298468285 NA NA differentially expressed no change NA NA 7:138861139 7:140781693 ARRIBA in-frame 7 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_Z6BWR941 4.07491451163637 2.0960755896029 NA NA differentially expressed differentially expressed NA NA 7:138861139 7:140787584 ARRIBA in-frame 13 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_Z7Y2466H 3.13481869215152 1.89755848335526 NA NA differentially expressed no change NA NA 7:138861139 7:140781693 ARRIBA in-frame 9 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_ZTWGFWTX 2.98221899409301 0.719939895016428 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 3 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_ZV9Z3SY6 4.59449283077586 1.16760322052968 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 5 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--BRAF BS_ZZMYDZJW 3.9927307238719 1.80381332399274 NA NA differentially expressed no change NA NA 7:138861139 7:140787584 ARRIBA in-frame 5 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -KIAA1549--KIAA1549 BS_7N0B2CY1 3.79069661052825 3.79069661052825 NA NA differentially expressed differentially expressed NA NA 7:138911146 7:138912460 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.15Mb]],duplication/non-canonical_splicing KIAA1549 NA KIAA1549 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -KIAA1549--KIAA1549 BS_VNK9XYV9 3.14328478166288 3.14328478166288 NA NA differentially expressed differentially expressed NA NA 7:138894342 7:138919438 ARRIBA frameshift 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.15Mb]],duplication/non-canonical_splicing KIAA1549 NA KIAA1549 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_0WVJYM9R 0.124130741459582 NA NA 0.124130741459582 no change NA NA no change 11:33545378 11:33541802 ARRIBA frameshift 6 0 high [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_1D6PZNKN 0.892309821710578 NA NA 0.892309821710578 no change NA NA no change 11:33561735 11:33541802 ARRIBA frameshift 2 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_37GTVG4N 1.55810780679151 NA NA 1.55810780679151 no change NA NA no change 11:33545378 11:33541802 ARRIBA frameshift 3 3 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_399RPKC9 -0.259317281262369 NA NA -0.259317281262369 no change NA NA no change 11:33545378 11:33541802 ARRIBA frameshift 1 2 high [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_3BDAG9YN 1.65206514807009 NA NA 1.65206514807009 no change NA NA no change 11:33598947 11:33541802 ARRIBA frameshift 1 1 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_42DY6WS7 0.324855591826601 NA NA 0.324855591826601 no change NA NA no change 11:33545378 11:33541802 ARRIBA frameshift 5 0 medium [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_5YJEPPTP 0.463152937345415 NA NA 0.463152937345415 no change NA NA no change 11:33545378 11:33541802 ARRIBA frameshift 3 1 high [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_7327SDAQ 0.600898045786561 NA NA 0.600898045786561 no change NA NA no change 11:33545378 11:33541802 ARRIBA frameshift 3 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_81SP2HX4 1.81977074189982 NA NA 1.81977074189982 no change NA NA no change 11:33545378 11:33541802 ARRIBA frameshift 2 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_A3QZB9Y2 2.43110262463327 NA NA 2.43110262463327 differentially expressed NA NA differentially expressed 11:33545378 11:33541802 ARRIBA frameshift 4 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_AMQGM1V9 2.53959080311455 NA NA 2.53959080311455 differentially expressed NA NA differentially expressed 11:33545378 11:33541802 ARRIBA frameshift 6 1 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_EFE4YEK3 2.2791080222717 NA NA 2.2791080222717 differentially expressed NA NA differentially expressed 11:33646036 11:33541802 ARRIBA frameshift 1 2 medium [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_FEPRNEXX 2.20175657322112 NA NA 2.20175657322112 differentially expressed NA NA differentially expressed 11:33545378 11:33541802 ARRIBA frameshift 4 2 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_FWMJPKCV 0.257394502960608 NA NA 0.257394502960608 no change NA NA no change 11:33545378 11:33541802 ARRIBA frameshift 4 0 medium [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_GE2RVZE6 2.46053590780564 NA NA 2.46053590780564 differentially expressed NA NA differentially expressed 11:33545378 11:33541802 ARRIBA frameshift 4 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_N6NE6B3W 2.18531384330621 NA NA 2.18531384330621 differentially expressed NA NA differentially expressed 11:33545378 11:33541802 ARRIBA frameshift 9 1 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_P78SMRBS 0.533253447322673 NA NA 0.533253447322673 no change NA NA no change 11:33552241 11:33541802 ARRIBA frameshift 2 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_QEYPFYHD 2.06398381965135 NA NA 2.06398381965135 differentially expressed NA NA differentially expressed 11:33545378 11:33541802 ARRIBA frameshift 10 1 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_RHD7XPNP 2.73513806635132 NA NA 2.73513806635132 differentially expressed NA NA differentially expressed 11:33552241 11:33541802 ARRIBA frameshift 3 1 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_S69QZAJR 1.96635591490926 NA NA 1.96635591490926 no change NA NA no change 11:33545378 11:33541802 ARRIBA frameshift 3 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_T4P3J13C 2.42658061607991 NA NA 2.42658061607991 differentially expressed NA NA differentially expressed 11:33545378 11:33541802 ARRIBA frameshift 2 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_V96WVE3Z 0.966235192694205 NA NA 0.966235192694205 no change NA NA no change 11:33545378 11:33541802 ARRIBA frameshift 6 0 medium [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_VMMJYN8Z 1.3261600381646 NA NA 1.3261600381646 no change NA NA no change 11:33547879 11:33541802 ARRIBA frameshift 2 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_W9N9844Q 0.851414960547968 NA NA 0.851414960547968 no change NA NA no change 11:33545378 11:33541802 ARRIBA frameshift 3 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_WH5HDE0A 2.74402440678177 NA NA 2.74402440678177 differentially expressed NA NA differentially expressed 11:33545378 11:33541802 ARRIBA frameshift 6 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_XJTW0P8P 2.28962482209496 NA NA 2.28962482209496 differentially expressed NA NA differentially expressed 11:33545378 11:33541802 ARRIBA frameshift 12 1 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_Y0PCBNJV 0.356420905825212 NA NA 0.356420905825212 no change NA NA no change 11:33545378 11:33541802 ARRIBA frameshift 4 0 medium [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_YA8RBGD8 0.290724971773307 NA NA 0.290724971773307 no change NA NA no change 11:33545378 11:33541802 ARRIBA frameshift 2 1 medium [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_YVMEEBKC 0.0776502092363167 NA NA 0.0776502092363167 no change NA NA no change 11:33545378 11:33541802 ARRIBA frameshift 4 1 high [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_ZZPBANDD 0.696452123574139 NA NA 0.696452123574139 no change NA NA no change 11:33552241 11:33541802 ARRIBA frameshift 1 3 medium [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA -KIAA1671--AC244258.1 BS_8ZP3CBQA 2.25306869410306 NA NA NA differentially expressed NA NA NA 22:25112462 6:60488856 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr22--chr6]],translocation/5'-5' KIAA1671 NA AC244258.1 NA NA NA NA NA NA -KIAA1671--MAGOH BS_A3QZB9Y2 4.4241350381928 -1.95573225741699 NA NA differentially expressed no change NA NA 22:25192668 1:53238080 ARRIBA other 25 5 medium [INTERCHROMOSOMAL[chr22--chr1]],translocation/5'-5' KIAA1671 NA MAGOH NA NA NA NA NA NA -KIF13A--CYP51A1P1(465081)/SRRM1P2(663943) BS_6JHXXVR7 1.52749696539119 8.84742234764678 NA -0.0541109045929735 no change differentially expressed NA no change 6:17987054 3:83273102 ARRIBA frameshift 14 1 high [],translocation KIF13A NA CYP51A1P1 SRRM1P2 NA NA NA NA NA -KIF13A--CYP51A1P1(465081)/SRRM1P2(663943) BS_KE56MMY0 0.744553120105551 29.6351371713847 NA -0.0541109045929735 no change differentially expressed NA no change 6:17987054 3:83273102 ARRIBA frameshift 3 0 medium [],translocation KIF13A NA CYP51A1P1 SRRM1P2 NA NA NA NA NA -KIF14--SRGAP2 BS_QWTE1CWR 14.0965713532816 0.696588623419139 NA NA differentially expressed no change NA NA 1:200569911 1:206303281 ARRIBA in-frame 17 3 high [INTRACHROMOSOMAL[chr1:5.58Mb]],inversion KIF14 NA SRGAP2 NA Oncogene NA NA NA NA -KIF14--SRGAP2 BS_WKESC3XN 19.1846435501321 1.65492666227548 NA NA differentially expressed no change NA NA 1:200569911 1:206303281 ARRIBA in-frame 19 1 high [INTRACHROMOSOMAL[chr1:5.58Mb]],inversion KIF14 NA SRGAP2 NA Oncogene NA NA NA NA -KIF15--KIF15 BS_84XCR9GG 9.23680975496744 9.23680975496744 NA NA differentially expressed differentially expressed NA NA 3:44840456 3:44828214 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.11Mb]],duplication/non-canonical_splicing KIF15 NA KIF15 NA NA NA NA NA NA -KIF16B--KIF16B BS_QWNBZ9RJ 1.15880015564503 1.15880015564503 NA NA no change no change NA NA 20:16312335 20:16382130 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.30Mb]],duplication/non-canonical_splicing KIF16B NA KIF16B NA NA NA NA NA NA -KIF21A--DYNLRB2 BS_VJ2S5DVS -1.58729756116538 1.03058493270036 NA NA no change no change NA NA 12:39442927 16:80543276 ARRIBA frameshift 19 0 high [INTERCHROMOSOMAL[chr12--chr16]],translocation KIF21A NA DYNLRB2 NA NA NA NA NA NA -KIF21A--KIF21A BS_BKR4E30C -0.802797864939685 -0.802797864939685 NA NA no change no change NA NA 12:39319906 12:39322882 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing KIF21A NA KIF21A NA NA NA NA NA NA -KIF21A--SNAPC3 BS_VJ2S5DVS -1.58729756116538 0.694601976835736 NA NA no change no change NA NA 12:39301480 9:15443677 ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr12--chr9]],translocation/5'-5' KIF21A NA SNAPC3 NA NA Oncogene NA NA NA -KIF26B--MYCL BS_VVTHDRBD 11.4013694375055 25.8841847770018 NA NA differentially expressed differentially expressed NA NA 1:245500541 1:39897743 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:205.25Mb]],inversion KIF26B NA MYCL NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -KIF26B--SLIRP BS_D2K9C7XR 5.65687167673898 -0.809392745311129 NA NA differentially expressed no change NA NA 1:245156683 14:77710838 ARRIBA frameshift 3 1 medium [INTERCHROMOSOMAL[chr1--chr14]],translocation KIF26B NA SLIRP NA NA NA NA NA NA -KIF3C--AL606763.1(42198)/Z69733.1(47026) BS_S5P8VTN5 -0.167925536824924 NA NA NA no change NA NA NA 2:25980373 X:103450497 ARRIBA frameshift 2 0 high [],translocation KIF3C NA AL606763.1 Z69733.1 NA NA NA NA NA -KIF4A--KIF4A BS_8RHPJ740 4.72862925009293 4.72862925009293 NA NA differentially expressed differentially expressed NA NA X:70387297 X:70341799 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.13Mb]],duplication/non-canonical_splicing KIF4A NA KIF4A NA NA NA NA NA NA -KIF4A--KIF4A BS_J8G4SH4Z 10.2775000616379 10.2775000616379 NA NA differentially expressed differentially expressed NA NA X:70333689 X:70329405 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.13Mb]],duplication/non-canonical_splicing KIF4A NA KIF4A NA NA NA NA NA NA -KIF4A--KIF4A BS_JVW2JJ39 21.7097403314817 21.7097403314817 NA NA differentially expressed differentially expressed NA NA X:70387297 X:70341799 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.13Mb]],duplication/non-canonical_splicing KIF4A NA KIF4A NA NA NA NA NA NA -KIF4A--KIF4A BS_RHD7XPNP 15.631842628985 15.631842628985 NA NA differentially expressed differentially expressed NA NA X:70387297 X:70341799 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.13Mb]],duplication/non-canonical_splicing KIF4A NA KIF4A NA NA NA NA NA NA -KIF4A--KIF4A BS_X67GTEM6 11.5731206198484 11.5731206198484 NA NA differentially expressed differentially expressed NA NA X:70387297 X:70341799 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.13Mb]],duplication/non-canonical_splicing KIF4A NA KIF4A NA NA NA NA NA NA -KIF5C--H2AFY2 BS_WH8G4VFB -1.86119659628799 0.122828778066378 NA NA no change no change NA NA 2:148962119 10:70090060 ARRIBA in-frame 8 0 high [INTERCHROMOSOMAL[chr2--chr10]],translocation KIF5C NA H2AFY2 NA NA NA NA NA NA -KIF6--FAM26F BS_3F4FQJMR 4.32318960756468 1.1001200058243 NA NA differentially expressed no change NA NA 6:39540003 6:116463283 ARRIBA frameshift 10 3 high [INTRACHROMOSOMAL[chr6:76.74Mb]],inversion KIF6 NA FAM26F NA NA NA NA NA NA -KIF6--FAM26F BS_HC44ZA0V 4.96400101749 1.47229971160942 NA NA differentially expressed no change NA NA 6:39540003 6:116463283 ARRIBA frameshift 14 3 high [INTRACHROMOSOMAL[chr6:76.74Mb]],inversion KIF6 NA FAM26F NA NA NA NA NA NA -KIT--AC098868.1(102828)/LINC02260(53660) BS_TXZ7KHTQ 1.79709218923413 NA NA NA no change NA NA NA 4:54731998 4:54549551 ARRIBA frameshift 2 1 high [],duplication KIT NA AC098868.1 LINC02260 Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -KIT--LINC02465 BS_M0QYNVK8 1.16238187417037 NA NA NA no change NA NA NA 4:54658081 4:129780010 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr4:75.03Mb]],deletion KIT NA LINC02465 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -KLHDC10--COPG2 BS_HX0S30NE 1.45878572576619 1.74540379090519 NA NA no change no change NA NA 7:130070809 7:130508659 ARRIBA in-frame 16 2 high [INTRACHROMOSOMAL[chr7:0.37Mb]],inversion KLHDC10 NA COPG2 NA NA NA NA NA NA -KLHDC10--COPG2 BS_HX0S30NE 1.45878572576619 1.74540379090519 NA NA no change no change NA NA 7:130097007 7:130508659 ARRIBA in-frame 4 2 high [INTRACHROMOSOMAL[chr7:0.37Mb]],inversion KLHDC10 NA COPG2 NA NA NA NA NA NA -KLHDC10--COPG2 BS_YB2RXRHT 1.40851289897547 0.814652086282764 NA NA no change no change NA NA 7:130070809 7:130508659 ARRIBA in-frame 8 0 high [INTRACHROMOSOMAL[chr7:0.37Mb]],inversion KLHDC10 NA COPG2 NA NA NA NA NA NA -KLHDC10--COPG2 BS_YB2RXRHT 1.40851289897547 0.814652086282764 NA NA no change no change NA NA 7:130097007 7:130508659 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:0.37Mb]],inversion KLHDC10 NA COPG2 NA NA NA NA NA NA -KLHL1--KLHL1 BS_0X9EGHY2 0.517208022556123 0.517208022556123 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_0Y66ZBWE 2.13618763928273 2.13618763928273 NA NA differentially expressed differentially expressed NA NA 13:69940040 13:69975802 ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_13CGKADW 0.667548997357161 0.667548997357161 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_273HKCT4 0.551644637801654 0.551644637801654 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_37GTVG4N 3.45400153084926 3.45400153084926 NA NA differentially expressed differentially expressed NA NA 13:69940040 13:69975802 ARRIBA frameshift 68 11 high [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_44A3ES23 1.38960529569528 1.38960529569528 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_470DYRJQ 0.643292083715658 0.643292083715658 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_4W1DBAN4 1.84952435651262 1.84952435651262 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_5P1TN10Z 4.66039201197724 4.66039201197724 NA NA differentially expressed differentially expressed NA NA 13:69940040 13:69975802 ARRIBA frameshift 26 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_5VQP0E6K 4.66848179503252 4.66848179503252 NA NA differentially expressed differentially expressed NA NA 13:69940040 13:69975802 ARRIBA frameshift 30 3 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_61E80SD6 5.74403711963775 5.74403711963775 NA NA differentially expressed differentially expressed NA NA 13:69940040 13:69975802 ARRIBA frameshift 35 6 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_6MY8W3H0 1.19805796430033 1.19805796430033 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_7B89YR6K 3.16209721512538 3.16209721512538 NA NA differentially expressed differentially expressed NA NA 13:69940040 13:69975802 ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_92VDQ0NE 0.836680369147979 0.836680369147979 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_AD4JPN9Q 0.46437186244005 0.46437186244005 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_AG4H9S3J 0.446433135800357 0.446433135800357 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_AMQGM1V9 1.57891896897919 1.57891896897919 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_B1HVNV0T 3.11976208341893 3.11976208341893 NA NA differentially expressed differentially expressed NA NA 13:69940040 13:69975802 ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_CQSAJ7BF 0.585477070632061 0.585477070632061 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_CREQ97QC 2.55294366855253 2.55294366855253 NA NA differentially expressed differentially expressed NA NA 13:69940040 13:69975802 ARRIBA frameshift 11 3 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_FEPRNEXX 1.22833172902496 1.22833172902496 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_G63HYD6N 1.69553278213956 1.69553278213956 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_GYA4V1RD 0.363577466244839 0.363577466244839 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 5 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_HA20Y4XY 2.37246955661333 2.37246955661333 NA NA differentially expressed differentially expressed NA NA 13:69940040 13:69975802 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_HCP5C912 1.14860912142215 1.14860912142215 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 22 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_KPT2WPHW 1.22833172902496 1.22833172902496 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 17 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_KVNGNETA 0.908913503062546 0.908913503062546 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_MF47B9ZW 2.44414128982173 2.44414128982173 NA NA differentially expressed differentially expressed NA NA 13:69940040 13:69975802 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_N6NE6B3W 1.61366584071444 1.61366584071444 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_NFRXNAFE 1.33354323102626 1.33354323102626 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_P39SQPTS 3.3826069131005 3.3826069131005 NA NA differentially expressed differentially expressed NA NA 13:69940040 13:69975802 ARRIBA frameshift 37 3 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_QWNBZ9RJ 3.65357612945034 3.65357612945034 NA NA differentially expressed differentially expressed NA NA 13:69940040 13:69975802 ARRIBA frameshift 78 4 high [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_R7HZCZ8B 1.6332436658019 1.6332436658019 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 25 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_S0175QKX 3.53559982397068 3.53559982397068 NA NA differentially expressed differentially expressed NA NA 13:69940040 13:69975802 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_TDEFAPNH 1.91794480892708 1.91794480892708 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_TG93XC55 0.683552402129854 0.683552402129854 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_TV5B86ZD 4.84114564763749 4.84114564763749 NA NA differentially expressed differentially expressed NA NA 13:69940040 13:69975802 ARRIBA frameshift 52 8 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_VMMJYN8Z 1.58392130435934 1.58392130435934 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_VNE0ZPBS 0.659497214437349 0.659497214437349 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_XBQZYS8G 2.05183068572169 2.05183068572169 NA NA differentially expressed differentially expressed NA NA 13:69940040 13:69975802 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_XJTW0P8P 3.02511188652889 3.02511188652889 NA NA differentially expressed differentially expressed NA NA 13:69940040 13:69975802 ARRIBA frameshift 47 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_ZH1FBX50 0.585477070632061 0.585477070632061 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_ZR96A4FH 0.957913578349476 0.957913578349476 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL1--KLHL1 BS_ZRM0W01M 0.568635049100034 0.568635049100034 NA NA no change no change NA NA 13:69940040 13:69975802 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA -KLHL20(1260)/RN7SKP160(3586)--KLHL20 BS_8ZP3CBQA 1.60711498682344 1.60711498682344 -0.190395190634745 NA no change no change no change NA 1:173787962 1:173756976 ARRIBA other 3 0 medium [],duplication KLHL20 RN7SKP160 KLHL20 NA NA NA NA NA NA -KLHL26--ETFA BS_AZN38B7V -1.59157534852685 0.0863429836069218 NA NA no change no change NA NA 19:18637137 15:76225929 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr19--chr15]],translocation KLHL26 NA ETFA NA NA NA NA NA NA -KLHL26--ETFA BS_AZN38B7V -1.59157534852685 0.0863429836069218 NA NA no change no change NA NA 19:18659784 15:76225929 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr19--chr15]],translocation KLHL26 NA ETFA NA NA NA NA NA NA -KLHL28--AL359212.1(104723)/AL358335.3(168129) BS_ZVZDDW2G 1.75950545015908 NA NA NA no change NA NA NA 14:44961597 14:48150939 ARRIBA other 2 0 high [],inversion KLHL28 NA AL359212.1 AL358335.3 NA NA NA NA NA -KLHL29--AC010145.1 BS_AHEFXG7W 2.58097483956295 NA NA NA differentially expressed NA NA NA 2:23562481 2:16062885 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr2:7.32Mb]],inversion KLHL29 NA AC010145.1 NA NA NA NA NA NA -KLHL29(22768)/ATAD2B(17285)--ATAD2B BS_N6NE6B3W 0.346331176243488 2.34472159016546 2.34472159016546 NA no change differentially expressed differentially expressed NA 2:23731379 2:23783028 ARRIBA other 1 2 high [],duplication KLHL29 ATAD2B ATAD2B NA NA NA NA NA NA -KLHL3--AC106791.2(33519)/NPY6R(5738) BS_Z85M2R3N -0.606248754428703 NA NA -1.20677818199476 no change NA NA no change 5:137658131 5:137795455 ARRIBA frameshift 1 0 low [],duplication KLHL3 NA AC106791.2 NPY6R NA NA NA NA NA -KLHL32--KLHL32 BS_FAVRBEW7 -0.0522774091990125 -0.0522774091990125 NA NA no change no change NA NA 6:97085341 6:97041492 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing KLHL32 NA KLHL32 NA NA NA NA NA NA -KLHL32--KLHL32 BS_X67GTEM6 1.20771310963202 1.20771310963202 NA NA no change no change NA NA 6:97085341 6:97041492 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing KLHL32 NA KLHL32 NA NA NA NA NA NA -KLHL7--HDAC9 BS_KE56MMY0 2.99950732298554 3.68879169198115 NA NA differentially expressed differentially expressed NA NA 7:23165938 7:18162229 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr7:4.10Mb]],duplication KLHL7 NA HDAC9 NA NA NA NA NA NA -KLHL7--RNF216 BS_P0QF87WC 1.51747853066411 2.56147075939561 NA NA no change differentially expressed NA NA 7:23106146 7:5761138 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr7:17.32Mb]],inversion KLHL7 NA RNF216 NA NA Oncogene NA NA NA -KLHL7--RNF216 BS_WAXJY4XQ 1.98469732169392 2.68410142488556 NA NA no change differentially expressed NA NA 7:23106146 7:5761138 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:17.32Mb]],inversion KLHL7 NA RNF216 NA NA Oncogene NA NA NA -KLRC1(39111)/AC068775.1(11806)--AC068775.1 BS_9DFBHHB5 5.30695579769716 NA NA NA differentially expressed NA NA NA 12:10493796 12:10522927 ARRIBA other 3 2 medium [],duplication KLRC1 AC068775.1 AC068775.1 NA NA NA NA NA NA -KLRK1--KLRC4 BS_1EBQ3T20 4.22687156171102 5.14947656849208 NA NA differentially expressed differentially expressed NA NA 12:10378132 12:10409010 ARRIBA frameshift 2 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr12:0.02Mb],LOCAL_REARRANGEMENT:-:[15508]],duplication KLRK1 NA KLRC4 NA Oncogene NA NA NA NA -KMT2A--MLLT10 BS_9GJ23RHH 1.39631892354767 4.66454031762148 NA NA no change differentially expressed NA NA 11:118482495 10:21651673 ARRIBA in-frame 17 1 high [Mitelman,Cosmic,HGNC_GENEFAM,ChimerKB,ChimerSeq,INTERCHROMOSOMAL[chr11--chr10]],translocation KMT2A NA MLLT10 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA -KMT2C--C7orf61 BS_WH8G4VFB 3.46682223730518 2.50338131682072 NA NA differentially expressed differentially expressed NA NA 7:152435626 7:100463686 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:51.67Mb]],deletion KMT2C NA C7orf61 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -KMT2C--C7orf61 BS_WH8G4VFB 3.46682223730518 2.50338131682072 NA NA differentially expressed differentially expressed NA NA 7:152435626 7:100456985 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:51.67Mb]],deletion KMT2C NA C7orf61 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -KMT2C--KMT2C BS_7G42J2SK 2.15956900127204 2.15956900127204 NA NA differentially expressed differentially expressed NA NA 7:152162117 7:152167378 ARRIBA frameshift 17 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.30Mb]],duplication/non-canonical_splicing KMT2C NA KMT2C NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -KMT2C--PTPRS BS_WJ9H4NZZ 4.34558336154571 3.72590624193454 NA NA differentially expressed differentially expressed NA NA 7:152358587 19:5222220 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr7--chr19]],translocation KMT2C NA PTPRS NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -KMT2C--TSC22D4 BS_WH8G4VFB 3.46682223730518 -1.96435152007621 NA NA differentially expressed no change NA NA 7:152435626 7:100467600 ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr7:51.66Mb]],deletion KMT2C NA TSC22D4 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -KMT2C--TSC22D4 BS_WH8G4VFB 3.46682223730518 -1.96435152007621 NA NA differentially expressed no change NA NA 7:152435626 7:100464029 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:51.66Mb]],deletion KMT2C NA TSC22D4 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -KMT2C--TSC22D4 BS_WH8G4VFB 3.46682223730518 -1.96435152007621 NA NA differentially expressed no change NA NA 7:152435626 7:100463686 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:51.66Mb]],deletion KMT2C NA TSC22D4 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -KMT2E--KMT2E BS_7G42J2SK 1.75720524550201 1.75720524550201 NA NA no change no change NA NA 7:105102194 7:105066727 ARRIBA frameshift 11 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing KMT2E NA KMT2E NA NA NA NA NA NA -KMT2E--KMT2E BS_EK5PCKY0 1.2776239154867 1.2776239154867 NA NA no change no change NA NA 7:105102194 7:105066727 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing KMT2E NA KMT2E NA NA NA NA NA NA -KMT2E--RNU1-14P(99521)/RN7SKP218(24418) BS_4QW2S1Q8 1.63498054245782 NA NA -0.0294627825494395 no change NA NA no change 7:105081797 7:53465730 ARRIBA frameshift 3 0 medium [],inversion KMT2E NA RNU1-14P RN7SKP218 NA NA NA NA NA -KMT2E--RNU7-188P(27154)/SEM1(76552) BS_HX0S30NE 1.24545066106052 NA NA NA no change NA NA NA 7:105038199 7:96405074 ARRIBA other 6 1 high [],duplication KMT2E NA RNU7-188P SEM1 NA NA NA NA NA -KMT2E--RNU7-188P(27154)/SEM1(76552) BS_YB2RXRHT 1.13278652979699 NA NA NA no change NA NA NA 7:105038199 7:96405074 ARRIBA other 3 0 high [],duplication KMT2E NA RNU7-188P SEM1 NA NA NA NA NA -KMT2E--SEM1 BS_HX0S30NE 1.24545066106052 NA NA NA no change NA NA NA 7:105014535 7:96497558 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:8.30Mb]],duplication/5'-5' KMT2E NA SEM1 NA NA NA NA NA NA -KMT5B--AP003716.1 BS_0WQJP6ZG NA NA NA NA NA NA NA NA 11:68213477 11:67888153 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr11:0.25Mb]],inversion KMT5B NA AP003716.1 NA NA NA NA NA NA -KMT5B--AP003716.1 BS_0WQJP6ZG NA NA NA NA NA NA NA NA 11:68213138 11:67888153 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr11:0.25Mb]],inversion KMT5B NA AP003716.1 NA NA NA NA NA NA -KNTC1--CLIP1 BS_9NZ2D6AD 4.86143082342917 1.05742775258834 NA NA differentially expressed no change NA NA 12:122573285 12:122355312 ARRIBA in-frame 20 0 high [INTRACHROMOSOMAL[chr12:0.10Mb]],inversion KNTC1 NA CLIP1 NA NA CosmicCensus NA NA NA -KREMEN1--TRMU(90)/CELSR1(3404) BS_49BQS7Z6 1.68022598217827 -1.1109143277516 NA 13.0395168637379 no change no change NA differentially expressed 22:29145346 22:46357430 ARRIBA other 28 6 medium [],deletion KREMEN1 NA TRMU CELSR1 NA NA NA NA NA -KREMEN1--TRMU(90)/CELSR1(3404) BS_GXTFW99H -0.29847816713456 -1.00427342960597 NA 3.87586379054431 no change no change NA differentially expressed 22:29145346 22:46357430 ARRIBA other 3 0 medium [],deletion KREMEN1 NA TRMU CELSR1 NA NA NA NA NA -KRT8P4(181348)/AF117829.1(12990)--AF117829.1 BS_A1VEGWTR 11.8406762035209 NA NA NA differentially expressed NA NA NA 8:89596419 8:89629251 ARRIBA other 1 0 low [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(181348)/AF117829.1(12990)--AF117829.1 BS_HCP5C912 10.6399041837059 NA NA NA differentially expressed NA NA NA 8:89596419 8:89628299 ARRIBA other 1 0 low [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(181348)/AF117829.1(12990)--AF117829.1 BS_R7HZCZ8B 3.70062593112308 NA NA NA differentially expressed NA NA NA 8:89596419 8:89629271 ARRIBA other 1 0 low [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(190295)/AF117829.1(4043)--AF117829.1 BS_WRQHPSXQ 23.1281953767325 NA NA NA differentially expressed NA NA NA 8:89605366 8:89617156 ARRIBA other 1 0 low [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(21435)/AF117829.1(172903)--AF117829.1 BS_51RA1PGE 4.16357763312008 NA NA NA differentially expressed NA NA NA 8:89436506 8:89725641 ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(21435)/AF117829.1(172903)--AF117829.1 BS_G7AGNB5G 6.85510917743896 NA NA NA differentially expressed NA NA NA 8:89436506 8:89725641 ARRIBA other 3 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(21435)/AF117829.1(172903)--AF117829.1 BS_SDA4RMMG 1.31961601755998 NA NA NA no change NA NA NA 8:89436506 8:89725641 ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_23W9EPFE 32.3388140039664 NA NA NA differentially expressed NA NA NA 8:89418044 8:89725641 ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_52DAPP1Y 4.6223014066524 NA NA NA differentially expressed NA NA NA 8:89418044 8:89725641 ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_8J3B6ZB6 1.80493287603093 NA NA NA no change NA NA NA 8:89418044 8:89725641 ARRIBA other 3 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_CREQ97QC 6.85510917743896 NA NA NA differentially expressed NA NA NA 8:89418044 8:89725641 ARRIBA other 3 0 high [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_KX6J8TRK 3.23336763984107 NA NA NA differentially expressed NA NA NA 8:89418044 8:89725641 ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_N8J1DP02 5.97386018626084 NA NA NA differentially expressed NA NA NA 8:89418044 8:89725641 ARRIBA other 3 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_PSW27ZTE 10.2331820902844 NA NA NA differentially expressed NA NA NA 8:89418044 8:89725641 ARRIBA other 2 1 high [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_R7HZCZ8B 3.70062593112308 NA NA NA differentially expressed NA NA NA 8:89418044 8:89725641 ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_SDA4RMMG 1.31961601755998 NA NA NA no change NA NA NA 8:89418044 8:89725641 ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_TXZ7KHTQ 1.80493287603093 NA NA NA no change NA NA NA 8:89418044 8:89725641 ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_WRQHPSXQ 23.1281953767325 NA NA NA differentially expressed NA NA NA 8:89418044 8:89725641 ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA -KRTAP5-AS1--KRTAP5-9(15226)/KRTAP5-10(784) BS_QEYPFYHD 1.81644804090406 -1.84786740751695 NA -1.21537567774889 no change no change NA no change 11:1599051 11:71564779 ARRIBA other 1 2 medium [],inversion KRTAP5-AS1 NA KRTAP5-9 KRTAP5-10 NA NA NA NA NA -KRTAP5-AS1--KRTAP5-9(15226)/KRTAP5-10(784) BS_VNWKNRY4 1.67716379773777 -1.60020837847637 NA -1.30743547480027 no change no change NA no change 11:1599051 11:71564779 ARRIBA other 2 0 low [],inversion KRTAP5-AS1 NA KRTAP5-9 KRTAP5-10 NA NA NA NA NA -KRTAP5-AS1--NADSYN1(2410)/KRTAP5-7(750) BS_M86ECPHK 1.22733388269608 -1.00765521639343 NA -1.29236385684558 no change no change NA no change 11:1599051 11:71526517 ARRIBA other 3 0 low [],inversion KRTAP5-AS1 NA NADSYN1 KRTAP5-7 NA NA NA NA NA -KSR2--KSR2 BS_2XD3MNKD 0.362597972736246 0.362597972736246 NA NA no change no change NA NA 12:117761011 12:117761524 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.52Mb]],duplication/non-canonical_splicing KSR2 NA KSR2 NA Kinase, Kinase Kinase, Kinase NA NA NA -KSR2--KSR2 BS_JXNZYGCR 1.63236745580557 1.63236745580557 NA NA no change no change NA NA 12:117761011 12:117761524 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.52Mb]],duplication/non-canonical_splicing KSR2 NA KSR2 NA Kinase, Kinase Kinase, Kinase NA NA NA -KSR2--KSR2 BS_NT9NZYFD 0.801071478569337 0.801071478569337 NA NA no change no change NA NA 12:117761011 12:117761524 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.52Mb]],duplication/non-canonical_splicing KSR2 NA KSR2 NA Kinase, Kinase Kinase, Kinase NA NA NA -L3HYPDH--CCDC175 BS_1TWCV047 1.34292253467128 -0.400004357826491 NA NA no change no change NA NA 14:59475869 14:59565275 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_3MYEMXPQ 0.366171260975194 1.14529197130969 NA NA no change no change NA NA 14:59475869 14:59565275 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_3MYEMXPQ 0.366171260975194 1.14529197130969 NA NA no change no change NA NA 14:59475869 14:59551436 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_7BTZQKYY 0.51577822158979 0.67175256514284 NA NA no change no change NA NA 14:59475869 14:59565275 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_7FWZ518S 0.585586356840313 1.91791575719433 NA NA no change no change NA NA 14:59475869 14:59551436 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_7FWZ518S 0.585586356840313 1.91791575719433 NA NA no change no change NA NA 14:59475869 14:59568380 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_9NJHQE9F 0.988266008300908 0.82907336432545 NA NA no change no change NA NA 14:59475869 14:59565275 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_9NJHQE9F 0.988266008300908 0.82907336432545 NA NA no change no change NA NA 14:59475869 14:59551436 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_9NJHQE9F 0.988266008300908 0.82907336432545 NA NA no change no change NA NA 14:59479182 14:59543454 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_9NJHQE9F 0.988266008300908 0.82907336432545 NA NA no change no change NA NA 14:59475869 14:59525434 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_CYEY58NY -0.238806303706467 0.369003489313288 NA NA no change no change NA NA 14:59475869 14:59565275 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_CYEY58NY -0.238806303706467 0.369003489313288 NA NA no change no change NA NA 14:59475869 14:59568380 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_CYEY58NY -0.238806303706467 0.369003489313288 NA NA no change no change NA NA 14:59475869 14:59551436 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_CYEY58NY -0.238806303706467 0.369003489313288 NA NA no change no change NA NA 14:59475869 14:59538840 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_DEHJF4C7 0.607660920015199 -0.166276945009018 NA NA no change no change NA NA 14:59475869 14:59565275 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_FEPRNEXX 0.799736739870388 2.69782485049771 NA NA no change differentially expressed NA NA 14:59475869 14:59565275 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_FEPRNEXX 0.799736739870388 2.69782485049771 NA NA no change differentially expressed NA NA 14:59475869 14:59551436 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_FEPRNEXX 0.799736739870388 2.69782485049771 NA NA no change differentially expressed NA NA 14:59479182 14:59565275 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_FEPRNEXX 0.799736739870388 2.69782485049771 NA NA no change differentially expressed NA NA 14:59479182 14:59543454 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_FEPRNEXX 0.799736739870388 2.69782485049771 NA NA no change differentially expressed NA NA 14:59475869 14:59521676 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_JTMXAMB7 -0.325891509206642 0.369003489313288 NA NA no change no change NA NA 14:59475869 14:59565275 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_JZRM1S3T -0.627148950877652 -0.313906588747211 NA NA no change no change NA NA 14:59475869 14:59565275 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_M4NVX721 -1.13756639380124 -0.120539900522741 NA NA no change no change NA NA 14:59475869 14:59565275 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_N6NE6B3W 0.0655936027204982 2.21155687327795 NA NA no change differentially expressed NA NA 14:59475869 14:59565275 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_N6NE6B3W 0.0655936027204982 2.21155687327795 NA NA no change differentially expressed NA NA 14:59475869 14:59551436 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_N6NE6B3W 0.0655936027204982 2.21155687327795 NA NA no change differentially expressed NA NA 14:59475869 14:59540746 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_N6NE6B3W 0.0655936027204982 2.21155687327795 NA NA no change differentially expressed NA NA 14:59475869 14:59538840 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_NKRYMHEP -0.167057795463968 0.757382078646728 NA NA no change no change NA NA 14:59475869 14:59565275 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_NKRYMHEP -0.167057795463968 0.757382078646728 NA NA no change no change NA NA 14:59475869 14:59551436 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_WRQHPSXQ 0.088992174649943 0.0479629950445625 NA NA no change no change NA NA 14:59475869 14:59565275 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_WRQHPSXQ 0.088992174649943 0.0479629950445625 NA NA no change no change NA NA 14:59475869 14:59540746 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_WRQHPSXQ 0.088992174649943 0.0479629950445625 NA NA no change no change NA NA 14:59479182 14:59543454 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_ZRM0W01M -0.169996630914135 2.06189781999142 NA NA no change differentially expressed NA NA 14:59475869 14:59551436 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_ZRM0W01M -0.169996630914135 2.06189781999142 NA NA no change differentially expressed NA NA 14:59475869 14:59565275 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_ZRM0W01M -0.169996630914135 2.06189781999142 NA NA no change differentially expressed NA NA 14:59475869 14:59568380 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_ZRM0W01M -0.169996630914135 2.06189781999142 NA NA no change differentially expressed NA NA 14:59475869 14:59540746 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_ZRM0W01M -0.169996630914135 2.06189781999142 NA NA no change differentially expressed NA NA 14:59479182 14:59521676 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -L3HYPDH--CCDC175 BS_ZRM0W01M -0.169996630914135 2.06189781999142 NA NA no change differentially expressed NA NA 14:59475869 14:59511803 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA -LAMA1--LAMA1 BS_7BTZQKYY 2.99994717344178 2.99994717344178 NA NA differentially expressed differentially expressed NA NA 18:7032066 18:7046367 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA -LAMA1--LAMA1 BS_7G42J2SK 2.75008151960692 2.75008151960692 NA NA differentially expressed differentially expressed NA NA 18:6961586 18:6999997 ARRIBA frameshift 4 3 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA -LAMA1--LAMA1 BS_G63HYD6N 0.150195356547785 0.150195356547785 NA NA no change no change NA NA 18:7049078 18:7080457 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA -LAMA1--LAMA1 BS_KEA474HN -0.181510800098178 -0.181510800098178 NA NA no change no change NA NA 18:6973057 18:6980637 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA -LAMA1--LAMA1 BS_MKM0EEN1 0.382884668883964 0.382884668883964 NA NA no change no change NA NA 18:6973057 18:6980637 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA -LAMA1--LAMA1 BS_NGHK9RZP 1.18694129246821 1.18694129246821 NA NA no change no change NA NA 18:6985237 18:6999997 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA -LAMA1--LAMA1 BS_NRPG5K4K 0.687151605799075 0.687151605799075 NA NA no change no change NA NA 18:6977727 18:6980637 ARRIBA frameshift 3 2 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA -LAMA1--LAMA1 BS_P78SMRBS 3.22610499065065 3.22610499065065 NA NA differentially expressed differentially expressed NA NA 18:6977727 18:6980637 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA -LAMA1--LAMA1 BS_S0175QKX 5.58465829680193 5.58465829680193 NA NA differentially expressed differentially expressed NA NA 18:7032066 18:7046367 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA -LAMA1--LAMA1 BS_SAA624A4 0.555739870264394 0.555739870264394 NA NA no change no change NA NA 18:6977727 18:6980637 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA -LAMA1--LAMA1 BS_TNRHHYNC 3.41927917771731 3.41927917771731 NA NA differentially expressed differentially expressed NA NA 18:6974903 18:6980637 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA -LAMA1--LAMA1 BS_VJ2S5DVS 1.57790375750327 1.57790375750327 NA NA no change no change NA NA 18:6973057 18:6980637 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA -LAMA1--LAMA1 BS_WGK8ZMVA 3.11387836855906 3.11387836855906 NA NA differentially expressed differentially expressed NA NA 18:7032984 18:7040236 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA -LAMA1--LAMA1 BS_Z7PKVY9J 0.421228669164063 0.421228669164063 NA NA no change no change NA NA 18:7044722 18:7049257 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA -LAMA2--AL356124.1 BS_M86ECPHK 3.31496529681427 NA NA NA differentially expressed NA NA NA 6:129410813 6:129558166 ARRIBA other 2 2 medium [INTRACHROMOSOMAL[chr6:0.01Mb],LOCAL_INVERSION:+:-:[10057]],duplication/3'-3' LAMA2 NA AL356124.1 NA NA NA NA NA NA -LAMA2--AL356124.1 BS_WGK8ZMVA 0.247838660828387 NA NA NA no change NA NA NA 6:129471532 6:129558166 ARRIBA other 1 3 medium [INTRACHROMOSOMAL[chr6:0.01Mb],LOCAL_INVERSION:+:-:[10057]],duplication/3'-3' LAMA2 NA AL356124.1 NA NA NA NA NA NA -LAMB1--AC004917.1 BS_4QW2S1Q8 1.6051245716527 NA NA NA no change NA NA NA 7:107959249 7:106511226 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:1.15Mb]],inversion/5'-5' LAMB1 NA AC004917.1 NA NA NA NA NA NA -LAMP2--PAM BS_8Z3SCKB5 2.88000820534935 2.55923680813273 NA NA differentially expressed differentially expressed NA NA X:120441730 5:102974116 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chrX--chr5]],translocation LAMP2 NA PAM NA NA NA NA NA NA -LAMP5-AS1--FOXRED2 BS_VNWKNRY4 0.372824483248626 2.76742281915054 NA NA no change differentially expressed NA NA 20:9507185 22:36487703 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr20--chr22]],translocation/3'-3' LAMP5-AS1 NA FOXRED2 NA NA NA NA NA NA -LAMTOR5-AS1--RBM15 BS_23QW0BBA 2.00769205072867 7.01716743630033 NA NA differentially expressed differentially expressed NA NA 1:110356031 1:110345539 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:+:[435]],duplication LAMTOR5-AS1 NA RBM15 NA NA CosmicCensus, Oncogene NA NA NA -LANCL2--EGFR BS_6WP1FHTE 0.879931255399666 3.52764831790165 NA NA no change differentially expressed NA NA 7:55411960 7:55107222 ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr7:0.15Mb]],duplication LANCL2 NA EGFR NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -LANCL2--EGFR BS_6WP1FHTE 0.879931255399666 3.52764831790165 NA NA no change differentially expressed NA NA 7:55401320 7:55119056 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:0.15Mb]],duplication LANCL2 NA EGFR NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -LARGE1--AL355922.3(75)/METTL17(4629) BS_ZVZDDW2G NA NA NA -1.86949776224404 NA NA NA no change 22:33166636 14:20985141 ARRIBA other 3 0 medium [],translocation LARGE1 NA AL355922.3 METTL17 NA NA NA NA NA -LARGE1--RNU1-47P(2631)/VDAC3P1(16421) BS_ZVZDDW2G NA -0.135183563233037 NA -0.463262440545675 NA no change NA no change 22:33919995 14:99948108 ARRIBA other 9 0 medium [],translocation LARGE1 NA RNU1-47P VDAC3P1 NA NA NA NA NA -LARGE1--SLC25A52(1259)/TRAPPC8(67034) BS_QWTE1CWR NA 1.71089268162576 NA 0.658399103343104 NA no change NA no change 22:33919995 18:31762139 ARRIBA other 4 0 high [],translocation LARGE1 NA SLC25A52 TRAPPC8 NA NA NA NA NA -LARGE1--Z93930.2 BS_1HQ76V6D NA NA NA NA NA NA NA NA 22:33856740 22:28821972 ARRIBA other 11 0 high [INTRACHROMOSOMAL[chr22:4.31Mb]],inversion LARGE1 NA Z93930.2 NA NA NA NA NA NA -LARGE1--Z98749.2 BS_49BQS7Z6 NA NA NA NA NA NA NA NA 22:33919995 22:38380990 ARRIBA other 7 2 high [INTRACHROMOSOMAL[chr22:4.41Mb]],duplication LARGE1 NA Z98749.2 NA NA NA NA NA NA -LARGE1--Z98749.2 BS_49BQS7Z6 NA NA NA NA NA NA NA NA 22:33919995 22:38361560 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr22:4.41Mb]],duplication LARGE1 NA Z98749.2 NA NA NA NA NA NA -LARGE1--Z98749.2 BS_GXTFW99H NA NA NA NA NA NA NA NA 22:33919995 22:38380990 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr22:4.41Mb]],duplication LARGE1 NA Z98749.2 NA NA NA NA NA NA -LARGE1--Z98749.3 BS_49BQS7Z6 NA NA NA NA NA NA NA NA 22:33919995 22:38380990 ARRIBA other 7 2 high [INTRACHROMOSOMAL[chr22:4.37Mb]],duplication LARGE1 NA Z98749.3 NA NA NA NA NA NA -LARGE1--Z98749.3 BS_49BQS7Z6 NA NA NA NA NA NA NA NA 22:33919995 22:38361560 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:4.37Mb]],duplication LARGE1 NA Z98749.3 NA NA NA NA NA NA -LARGE1--Z98749.3 BS_GXTFW99H NA NA NA NA NA NA NA NA 22:33919995 22:38380990 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:4.37Mb]],duplication LARGE1 NA Z98749.3 NA NA NA NA NA NA -LARGE1--ZNRF3 BS_1HQ76V6D NA 0.727417182884681 NA NA NA no change NA NA 22:33919995 22:28987076 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr22:4.10Mb]],inversion LARGE1 NA ZNRF3 NA NA CosmicCensus NA NA NA -LARGE1--ZNRF3 BS_1HQ76V6D NA 0.727417182884681 NA NA NA no change NA NA 22:33856740 22:28987076 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr22:4.10Mb]],inversion LARGE1 NA ZNRF3 NA NA CosmicCensus NA NA NA -LARP4B--WNK1 BS_A0DYVX9J 2.91661732495298 3.41455792388367 NA NA differentially expressed differentially expressed NA NA 10:911725 12:753962 ARRIBA other 3 5 medium [INTERCHROMOSOMAL[chr10--chr12]],translocation/3'-3' LARP4B NA WNK1 NA CosmicCensus Kinase, Kinase NA NA NA -LARS2--LARS2 BS_M4NVX721 -0.162791903441743 -0.162791903441743 NA NA no change no change NA NA 3:45458886 3:45417482 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.16Mb]],duplication/non-canonical_splicing LARS2 NA LARS2 NA NA NA NA NA NA -LBHD1--RPL4P1(8351)/TRAV6(8592) BS_PGK832G2 0.851741934752375 -0.027996780375973 NA -0.137765161946345 no change no change NA no change 11:62663236 14:21759897 ARRIBA frameshift 3 0 medium [],translocation LBHD1 NA RPL4P1 TRAV6 NA NA NA NA NA -LCOR--AKAP3 BS_34201DKZ 1.44953092941749 1.8578654924128 NA NA no change no change NA NA 10:96941556 12:4628804 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr10--chr12]],translocation/3'-3' LCOR NA AKAP3 NA TranscriptionFactor NA NA NA NA -LCOR--AKAP3 BS_WSQMAA33 5.09992320016421 5.70989465097308 NA NA differentially expressed differentially expressed NA NA 10:96941597 12:4628805 ARRIBA other 54 1 high [INTERCHROMOSOMAL[chr10--chr12]],translocation/3'-3' LCOR NA AKAP3 NA TranscriptionFactor NA NA NA NA -LDAH--INPP1 BS_RRAEQZ97 1.87612972482925 -1.45635436732541 NA NA no change no change NA NA 2:20823037 2:190360039 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr2:169.52Mb]],inversion LDAH NA INPP1 NA NA NA NA NA NA -LDHA--RNF144A BS_JR5ATB7G 1.52137866243753 1.79846539605221 NA NA no change no change NA NA 11:18407167 2:7040603 ARRIBA other 23 4 medium [INTERCHROMOSOMAL[chr11--chr2]],translocation/3'-3' LDHA NA RNF144A NA NA TumorSuppressorGene NA NA NA -LDLR--IL20RA(97340)/IL22RA2(1300) BS_1D6PZNKN 2.20038001504257 -2.33191353439269 NA -0.12763796495816 differentially expressed differentially expressed NA no change 19:11129670 6:137142520 ARRIBA frameshift 3 0 high [],translocation LDLR NA IL20RA IL22RA2 NA NA NA NA NA -LDLRAD4--CNTLN BS_PNYN0AYD 1.53085638479006 4.08101142713265 NA NA no change differentially expressed NA NA 18:13438384 9:17235658 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr18--chr9]],translocation LDLRAD4 NA CNTLN NA NA NA NA NA NA -LDLRAD4--CNTLN BS_PNYN0AYD 1.53085638479006 4.08101142713265 NA NA no change differentially expressed NA NA 18:13438384 9:17330632 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr18--chr9]],translocation LDLRAD4 NA CNTLN NA NA NA NA NA NA -LEF1--NMU(134797)/RNU6-276P(27141) BS_RXN5T5YT 0.857438781691319 6.97515998636775 NA NA no change differentially expressed NA NA 4:108168604 4:55771495 ARRIBA other 6 0 medium [],deletion LEF1 NA NMU RNU6-276P CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -LEMD2--DAAM2 BS_6JHXXVR7 -0.576682140043631 -2.48313249736041 NA NA no change differentially expressed NA NA 6:33782564 6:39792493 ARRIBA other 9 1 medium [INTRACHROMOSOMAL[chr6:6.00Mb]],duplication/5'-5' LEMD2 NA DAAM2 NA NA NA NA NA NA -LEMD2--DAAM2 BS_KE56MMY0 -0.373866167139962 -0.426135976983249 NA NA no change no change NA NA 6:33782564 6:39792493 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr6:6.00Mb]],duplication/5'-5' LEMD2 NA DAAM2 NA NA NA NA NA NA -LENG8-AS1--GSG1L BS_N6N147BY 0.732855339480171 -1.17572342503992 NA NA no change no change NA NA 19:54448165 16:27791467 ARRIBA other 8 1 high [INTERCHROMOSOMAL[chr19--chr16]],translocation LENG8-AS1 NA GSG1L NA NA NA NA NA NA -LHFPL2--CMYA5 BS_052PZFMK 3.64486134144101 -2.9242709484842 NA NA differentially expressed differentially expressed NA NA 5:78632264 5:79717519 ARRIBA other 5 4 high [INTRACHROMOSOMAL[chr5:0.92Mb]],duplication/5'-5' LHFPL2 NA CMYA5 NA NA NA NA NA NA -LHFPL2--PDE8B BS_6VPKXXMR 4.21239415350377 0.802565561286791 NA NA differentially expressed no change NA NA 5:78632264 5:77311994 ARRIBA other 11 1 high [INTRACHROMOSOMAL[chr5:1.06Mb]],inversion LHFPL2 NA PDE8B NA NA NA NA NA NA -LHFPL2--PDE8B BS_6VPKXXMR 4.21239415350377 0.802565561286791 NA NA differentially expressed no change NA NA 5:78648499 5:77311994 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:1.06Mb]],inversion LHFPL2 NA PDE8B NA NA NA NA NA NA -LHFPL2--PDE8B BS_M85CXHDV 5.70649823034219 0.295052258846313 NA NA differentially expressed no change NA NA 5:78632264 5:77311994 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr5:1.06Mb]],inversion LHFPL2 NA PDE8B NA NA NA NA NA NA -LHFPL2--TERT BS_6JHXXVR7 5.89175889039359 20.6912221110985 NA NA differentially expressed differentially expressed NA NA 5:78564813 5:1282624 ARRIBA other 20 6 high [INTRACHROMOSOMAL[chr5:77.19Mb]],deletion LHFPL2 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA -LHFPL2--TERT BS_6JHXXVR7 5.89175889039359 20.6912221110985 NA NA differentially expressed differentially expressed NA NA 5:78564813 5:1268633 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:77.19Mb]],deletion LHFPL2 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA -LHFPL2--TERT BS_6JHXXVR7 5.89175889039359 20.6912221110985 NA NA differentially expressed differentially expressed NA NA 5:78564813 5:1266535 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:77.19Mb]],deletion LHFPL2 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA -LHFPL2--TERT BS_6JHXXVR7 5.89175889039359 20.6912221110985 NA NA differentially expressed differentially expressed NA NA 5:78564813 5:1272280 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:77.19Mb]],deletion LHFPL2 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA -LHFPL2--TERT(925)/MIR4457(13316) BS_KE56MMY0 4.88514302894691 15.692091676861 NA NA differentially expressed differentially expressed NA NA 5:78510088 5:1295994 ARRIBA frameshift 19 0 medium [],deletion LHFPL2 NA TERT MIR4457 NA CosmicCensus, Oncogene, Oncogene NA NA NA -LHFPL2--TNRC6C BS_6VPKXXMR 4.21239415350377 0.243545014039908 NA NA differentially expressed no change NA NA 5:78509784 17:78063419 ARRIBA frameshift 7 1 high [INTERCHROMOSOMAL[chr5--chr17]],translocation/5'-5' LHFPL2 NA TNRC6C NA NA NA NA NA NA -LHFPL2--TNRC6C BS_M85CXHDV 5.70649823034219 0.9879044864524 NA NA differentially expressed no change NA NA 5:78509784 17:78063419 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr5--chr17]],translocation/5'-5' LHFPL2 NA TNRC6C NA NA NA NA NA NA -LHFPL3--ANO10 BS_97M1E2DW 3.24417561174795 0.387102007223873 NA NA differentially expressed no change NA NA 7:104736911 3:43580472 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr7--chr3]],translocation LHFPL3 NA ANO10 NA NA NA NA NA NA -LHPP--SLK BS_84XCR9GG -2.36020919574483 2.07833094786557 NA NA differentially expressed differentially expressed NA NA 10:124517271 10:103967710 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:20.43Mb]],duplication LHPP NA SLK NA NA Kinase, Kinase NA NA NA -LIMCH1--AC024022.1 BS_YCREDZTJ 0.305944101161895 NA NA NA no change NA NA NA 4:41661510 4:42340549 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr4:0.58Mb]],deletion/5'-5' LIMCH1 NA AC024022.1 NA NA NA NA NA NA -LINC-PINT--AC092167.1 BS_6JHXXVR7 0.491724038250829 NA NA NA no change NA NA NA 7:130945720 7:110531164 ARRIBA other 11 1 high [INTRACHROMOSOMAL[chr7:20.41Mb]],inversion/5'-5' LINC-PINT NA AC092167.1 NA TumorSuppressorGene NA NA NA NA -LINC-PINT--AC092167.1(19335)/IMMP2L(108962) BS_6JHXXVR7 0.491724038250829 NA NA 5.93475055365765 no change NA NA differentially expressed 7:130945720 7:110554089 ARRIBA other 2 1 high [],inversion LINC-PINT NA AC092167.1 IMMP2L TumorSuppressorGene NA NA NA NA -LINC-PINT--MET BS_6WP1FHTE -1.04571558793558 11.4981207363808 NA NA no change differentially expressed NA NA 7:130945720 7:116699071 ARRIBA other 78 7 high [INTRACHROMOSOMAL[chr7:14.14Mb]],inversion LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -LINC-PINT--MET BS_6WP1FHTE -1.04571558793558 11.4981207363808 NA NA no change differentially expressed NA NA 7:130945720 7:116695750 ARRIBA other 17 7 high [INTRACHROMOSOMAL[chr7:14.14Mb]],inversion LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -LINC-PINT--MET BS_6WP1FHTE -1.04571558793558 11.4981207363808 NA NA no change differentially expressed NA NA 7:130945720 7:116731668 ARRIBA other 8 1 medium [INTRACHROMOSOMAL[chr7:14.14Mb]],inversion LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -LINC-PINT--MET BS_6WP1FHTE -1.04571558793558 11.4981207363808 NA NA no change differentially expressed NA NA 7:130945720 7:116724772 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr7:14.14Mb]],inversion LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -LINC-PINT--MET BS_6WP1FHTE -1.04571558793558 11.4981207363808 NA NA no change differentially expressed NA NA 7:130984053 7:116699071 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:14.14Mb]],inversion LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -LINC-PINT--MET BS_E60JZ9Z3 -1.63006183983916 4.06894629197446 NA NA no change differentially expressed NA NA 7:130945720 7:116699071 ARRIBA other 10 2 high [INTRACHROMOSOMAL[chr7:14.14Mb]],inversion LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -LINC-PINT--MET BS_E60JZ9Z3 -1.63006183983916 4.06894629197446 NA NA no change differentially expressed NA NA 7:130945720 7:116731668 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr7:14.14Mb]],inversion LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -LINC-PINT--MET BS_E60JZ9Z3 -1.63006183983916 4.06894629197446 NA NA no change differentially expressed NA NA 7:130945720 7:116695750 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr7:14.14Mb]],inversion LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -LINC-PINT--UBE2H BS_GYA4V1RD 0.299035378079562 1.78901092763514 NA NA no change no change NA NA 7:131107720 7:129880971 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr7:0.99Mb]],deletion LINC-PINT NA UBE2H NA TumorSuppressorGene NA NA NA NA -LINC-PINT--UBE2H BS_GYA4V1RD 0.299035378079562 1.78901092763514 NA NA no change no change NA NA 7:131107720 7:129879642 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.99Mb]],deletion LINC-PINT NA UBE2H NA TumorSuppressorGene NA NA NA NA -LINC00174--BHMT BS_HB03GSHF 1.96504625481287 19.4928478204214 NA NA no change differentially expressed NA NA 7:66394350 5:79130933 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation LINC00174 NA BHMT NA NA NA NA NA NA -LINC00298--LINC00299 BS_044XZ8ST 1.49527645925165 5.04906854093462 NA NA no change differentially expressed NA NA 2:7985467 2:8324684 ARRIBA other 1 3 high [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00298 NA LINC00299 NA NA NA NA NA NA -LINC00298--LINC00299 BS_2SFTWNVE -0.466011536140653 0.646959487512197 NA NA no change no change NA NA 2:7968145 2:8326424 ARRIBA other 1 1 high [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00298 NA LINC00299 NA NA NA NA NA NA -LINC00298--LINC00299 BS_399RPKC9 2.88196062494184 2.36083536524841 NA NA differentially expressed differentially expressed NA NA 2:7968145 2:8312849 ARRIBA other 1 1 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00298 NA LINC00299 NA NA NA NA NA NA -LINC00298--LINC00299 BS_7BTZQKYY 0.0852346942261168 1.88008749762492 NA NA no change no change NA NA 2:8054865 2:8326424 ARRIBA other 2 1 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00298 NA LINC00299 NA NA NA NA NA NA -LINC00298--LINC00299 BS_M4NVX721 0.00853696983438076 1.45131150873684 NA NA no change no change NA NA 2:7968145 2:8312849 ARRIBA other 1 2 high [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00298 NA LINC00299 NA NA NA NA NA NA -LINC00298--LINC00299 BS_N8J1DP02 0.604439741923797 3.33150332961984 NA NA no change differentially expressed NA NA 2:8201947 2:8245140 ARRIBA other 9 2 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00298 NA LINC00299 NA NA NA NA NA NA -LINC00298--LINC00299 BS_NRPG5K4K 2.12477825576371 0.562081386617046 NA NA differentially expressed no change NA NA 2:8201947 2:8245140 ARRIBA other 8 0 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00298 NA LINC00299 NA NA NA NA NA NA -LINC00298--LINC00299 BS_SFKZSJN1 3.37094019197396 1.94450405150608 NA NA differentially expressed no change NA NA 2:8201947 2:8326424 ARRIBA other 2 1 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00298 NA LINC00299 NA NA NA NA NA NA -LINC00299--LINC00298 BS_HCP5C912 1.42981836005234 1.29744040643983 NA NA no change no change NA NA 2:8201947 2:8245140 ARRIBA other 5 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00299 NA LINC00298 NA NA NA NA NA NA -LINC00299--LINC00298 BS_NRPG5K4K 0.562081386617046 2.12477825576371 NA NA no change differentially expressed NA NA 2:8201947 2:8245140 ARRIBA other 6 0 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00299 NA LINC00298 NA NA NA NA NA NA -LINC00299--LINC00299 BS_0WVJYM9R 1.45131150873684 1.45131150873684 NA NA no change no change NA NA 2:8201947 2:8245140 ARRIBA other 9 1 high [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA -LINC00299--LINC00299 BS_49BQS7Z6 1.13563765397304 1.13563765397304 NA NA no change no change NA NA 2:8201947 2:8245140 ARRIBA other 5 1 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA -LINC00299--LINC00299 BS_CGB2WS2A 1.65828032068754 1.65828032068754 NA NA no change no change NA NA 2:8201947 2:8245140 ARRIBA other 4 1 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA -LINC00299--LINC00299 BS_G9XE3N9T 2.20609224455305 2.20609224455305 NA NA differentially expressed differentially expressed NA NA 2:8201947 2:8245140 ARRIBA other 6 0 high [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA -LINC00299--LINC00299 BS_GYA4V1RD 0.576393261880118 0.576393261880118 NA NA no change no change NA NA 2:8201947 2:8245140 ARRIBA other 4 2 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA -LINC00299--LINC00299 BS_HCP5C912 1.42981836005234 1.42981836005234 NA NA no change no change NA NA 2:8201947 2:8245140 ARRIBA other 6 0 high [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA -LINC00299--LINC00299 BS_N8J1DP02 3.33150332961984 3.33150332961984 NA NA differentially expressed differentially expressed NA NA 2:8201947 2:8245140 ARRIBA other 12 2 high [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA -LINC00299--LINC00299 BS_NRPG5K4K 0.562081386617046 0.562081386617046 NA NA no change no change NA NA 2:8201947 2:8245140 ARRIBA other 9 1 high [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA -LINC00299--LINC00299 BS_SFKZSJN1 1.94450405150608 1.94450405150608 NA NA no change no change NA NA 2:8201947 2:8245140 ARRIBA other 9 1 high [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA -LINC00299--LINC00299 BS_WWKNJSJ5 0.796671801335939 0.796671801335939 NA NA no change no change NA NA 2:8201947 2:8245140 ARRIBA other 2 1 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA -LINC00299--LINC00299(38054)/AC011747.2(121917) BS_T1YHK6B7 5.27351323084454 5.27351323084454 NA NA differentially expressed differentially expressed NA NA 2:8312726 2:8421675 ARRIBA other 1 0 low [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA -LINC00299--LINC00299(8464)/AC011747.2(151507) BS_N6NE6B3W 1.09978732276295 1.09978732276295 NA NA no change no change NA NA 2:8382200 2:8392085 ARRIBA other 2 0 low [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA -LINC00299--LINC00299(9347)/AC011747.2(150624) BS_044XZ8ST 5.04906854093462 5.04906854093462 NA NA differentially expressed differentially expressed NA NA 2:8287338 2:8392968 ARRIBA other 7 3 high [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA -LINC00299--LINC00299(9347)/AC011747.2(150624) BS_398KYV92 3.26145183614979 3.26145183614979 NA NA differentially expressed differentially expressed NA NA 2:8287338 2:8392968 ARRIBA other 3 0 high [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA -LINC00299--LINC00299(9347)/AC011747.2(150624) BS_7XRN3CFX 2.23933047573063 2.23933047573063 NA NA differentially expressed differentially expressed NA NA 2:8382200 2:8392968 ARRIBA other 8 0 medium [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA -LINC00299--LINC00299(9347)/AC011747.2(150624) BS_AD4JPN9Q 4.55113599260179 4.55113599260179 NA NA differentially expressed differentially expressed NA NA 2:8287338 2:8392968 ARRIBA other 2 0 low [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA -LINC00299--LINC00299(9347)/AC011747.2(150624) BS_CREQ97QC 1.79520939672977 1.79520939672977 NA NA no change no change NA NA 2:8054865 2:8392968 ARRIBA other 1 1 medium [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA -LINC00299--LINC00299(9347)/AC011747.2(150624) BS_CVGFNCBJ 4.21218701494426 4.21218701494426 NA NA differentially expressed differentially expressed NA NA 2:8382200 2:8392968 ARRIBA other 2 0 low [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA -LINC00299--LINC00299(9347)/AC011747.2(150624) BS_NRPG5K4K 0.562081386617046 0.562081386617046 NA NA no change no change NA NA 2:8060348 2:8392968 ARRIBA other 1 0 low [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA -LINC00299--LINC00299(9347)/AC011747.2(150624) BS_QNAQGAV6 2.95084868308204 2.95084868308204 NA NA differentially expressed differentially expressed NA NA 2:8324542 2:8392968 ARRIBA other 2 0 low [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA -LINC00299--LINC00299(9347)/AC011747.2(150624) BS_VJVDJABP 3.59660910661185 3.59660910661185 NA NA differentially expressed differentially expressed NA NA 2:8060348 2:8392968 ARRIBA other 1 1 low [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA -LINC00299--LINC00299(9347)/AC011747.2(150624) BS_W9AT0MR7 1.3644122288739 1.3644122288739 NA NA no change no change NA NA 2:8287338 2:8392968 ARRIBA other 3 1 high [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA -LINC00299--LINC00299(9347)/AC011747.2(150624) BS_ZVZDDW2G 0.576393261880118 0.576393261880118 NA NA no change no change NA NA 2:8312726 2:8392968 ARRIBA other 1 0 low [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA -LINC00299--LINC00299(9347)/AC011747.2(150624) BS_ZZPBANDD 3.14712761449815 3.14712761449815 NA NA differentially expressed differentially expressed NA NA 2:8287338 2:8392968 ARRIBA other 4 0 high [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA -LINC00377--ARF4P4(119650)/LINC00377(35153) BS_RQSKD7PN 3.8961978190828 8.19611466913345 NA 3.8961978190828 differentially expressed differentially expressed NA differentially expressed 13:81043787 13:81008517 ARRIBA other 7 0 medium [],duplication LINC00377 NA ARF4P4 LINC00377 NA NA NA NA NA -LINC00461--RAB3GAP1 BS_91VYM11A 1.98220525783717 1.03594165904678 NA NA no change no change NA NA 5:88684658 2:135175327 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr5--chr2]],translocation LINC00461 NA RAB3GAP1 NA NA NA NA NA NA -LINC00467--TRAF5 BS_NDFDQBCZ 0.897608507359088 3.01544348787361 NA NA no change differentially expressed NA NA 1:211391976 1:211365376 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.01Mb],LOCAL_REARRANGEMENT:+:[7857]],duplication LINC00467 NA TRAF5 NA NA NA NA NA NA -LINC00511--TBCD BS_X23724NJ 5.61844881638299 0.0762399089924733 NA NA differentially expressed no change NA NA 17:72592203 17:82852809 ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr17:10.11Mb]],duplication/5'-5' LINC00511 NA TBCD NA NA NA NA NA NA -LINC00511--ZNF750 BS_X23724NJ 5.61844881638299 13.3214341178309 NA NA differentially expressed differentially expressed NA NA 17:72592203 17:82832636 ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr17:10.19Mb]],duplication LINC00511 NA ZNF750 NA NA TranscriptionFactor NA NA NA -LINC00609--AL133304.3 BS_C6ZZ3FY5 7.34486558797169 NA NA NA differentially expressed NA NA NA 14:36070685 14:36063684 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr14:0.01Mb],LOCAL_REARRANGEMENT:+:[6684]],duplication LINC00609 NA AL133304.3 NA NA NA NA NA NA -LINC00623--NBPF26 BS_0C7VZC0A 2.0858159552957 1.85917989622363 NA NA differentially expressed no change NA NA 1:120913450 1:120763628 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:0.07Mb],LOCAL_REARRANGEMENT:+:[71794]],duplication LINC00623 NA NBPF26 NA NA NA NA NA NA -LINC00630--BMX BS_37GTVG4N 6.58571267975363 -0.770088702182239 NA NA differentially expressed no change NA NA X:102846020 X:15494849 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chrX:87.21Mb]],inversion/3'-3' LINC00630 NA BMX NA NA Kinase, Kinase NA NA NA -LINC00630--PIR BS_37GTVG4N 6.58571267975363 -1.647310917784 NA NA differentially expressed no change NA NA X:102846020 X:15491309 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chrX:87.28Mb]],inversion LINC00630 NA PIR NA NA NA NA NA NA -LINC00630--PIR BS_37GTVG4N 6.58571267975363 -1.647310917784 NA NA differentially expressed no change NA NA X:102827144 X:15491309 ARRIBA other 2 0 high [INTRACHROMOSOMAL[chrX:87.28Mb]],inversion LINC00630 NA PIR NA NA NA NA NA NA -LINC00630--PIR BS_37GTVG4N 6.58571267975363 -1.647310917784 NA NA differentially expressed no change NA NA X:102839972 X:15491309 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chrX:87.28Mb]],inversion LINC00630 NA PIR NA NA NA NA NA NA -LINC00630--PIR BS_37GTVG4N 6.58571267975363 -1.647310917784 NA NA differentially expressed no change NA NA X:102770420 X:15491309 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chrX:87.28Mb]],inversion LINC00630 NA PIR NA NA NA NA NA NA -LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_1T19NFJ8 3.71483434918028 NA NA NA differentially expressed NA NA NA 14:38745144 14:38334252 ARRIBA other 4 0 low [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA -LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_2XD3MNKD 4.91329523134542 NA NA NA differentially expressed NA NA NA 14:38745144 14:38334252 ARRIBA other 3 0 low [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA -LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_7P83Z28P 1.37225144880464 NA NA NA no change NA NA NA 14:38762924 14:38334252 ARRIBA other 1 1 high [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA -LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_92VDQ0NE 4.5192272789296 NA NA NA differentially expressed NA NA NA 14:38745144 14:38334252 ARRIBA other 3 0 low [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA -LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_JXNZYGCR 3.92413332069919 NA NA NA differentially expressed NA NA NA 14:38762924 14:38334252 ARRIBA other 4 0 high [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA -LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_NT9NZYFD 4.37925920157966 NA NA NA differentially expressed NA NA NA 14:38745144 14:38334252 ARRIBA other 3 1 medium [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA -LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_PK18H7E7 1.49652596733863 NA NA NA no change NA NA NA 14:38745144 14:38334252 ARRIBA other 2 0 low [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA -LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_QV51J756 1.72047706155238 NA NA NA no change NA NA NA 14:38745144 14:38334252 ARRIBA other 1 1 medium [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA -LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_Z7Y2466H 4.27960488328826 NA NA NA differentially expressed NA NA NA 14:38745144 14:38334252 ARRIBA other 2 1 medium [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA -LINC00639--AL355076.2 BS_ZVZDDW2G 0.893766990669346 NA NA NA no change NA NA NA 14:38946692 14:65247723 ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr14:26.29Mb]],duplication LINC00639 NA AL355076.2 NA NA NA NA NA NA -LINC00639--AL355076.2 BS_ZVZDDW2G 0.893766990669346 NA NA NA no change NA NA NA 14:38948178 14:65247723 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr14:26.29Mb]],duplication LINC00639 NA AL355076.2 NA NA NA NA NA NA -LINC00639--AL355076.2 BS_ZVZDDW2G 0.893766990669346 NA NA NA no change NA NA NA 14:38941520 14:65247723 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr14:26.29Mb]],duplication LINC00639 NA AL355076.2 NA NA NA NA NA NA -LINC00639--AL392023.2 BS_GYA4V1RD 3.00111738232367 NA NA NA differentially expressed NA NA NA 14:38835231 14:38168399 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr14:0.56Mb]],deletion LINC00639 NA AL392023.2 NA NA NA NA NA NA -LINC00639--RNU2-14P(34015)/LINC02324(54336) BS_ZVZDDW2G 0.893766990669346 -0.0294627825494395 NA NA no change no change NA NA 14:38946692 14:65158557 ARRIBA other 4 0 medium [],duplication LINC00639 NA RNU2-14P LINC02324 NA NA NA NA NA -LINC00846--AP000275.2 BS_R7HZCZ8B -0.915454643055561 NA NA NA no change NA NA NA 21:32573284 21:32587477 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr21:0.00Mb],LOCAL_REARRANGEMENT:-:[2941]],duplication LINC00846 NA AP000275.2 NA NA NA NA NA NA -LINC00869--AC241952.1 BS_KPT2WPHW -0.296390035805648 NA NA NA no change NA NA NA 1:149607554 1:120556551 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr1:28.91Mb]],duplication/5'-5' LINC00869 NA AC241952.1 NA NA NA NA NA NA -LINC00869--AC241952.1 BS_ME3HKN2C -0.112576865180338 NA NA NA no change NA NA NA 1:149607554 1:120556551 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:28.91Mb]],duplication/5'-5' LINC00869 NA AC241952.1 NA NA NA NA NA NA -LINC00869--AC241952.1 BS_RB2S0KDF 0.429753667887666 NA NA NA no change NA NA NA 1:149607554 1:120556551 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:28.91Mb]],duplication/5'-5' LINC00869 NA AC241952.1 NA NA NA NA NA NA -LINC00869--FAM72C(2579)/SRGAP2D(543) BS_0C7VZC0A 1.18091969140095 -0.635201380493751 NA -1.01482039828135 no change no change NA no change 1:149607554 1:143974544 ARRIBA other 2 0 medium [],duplication LINC00869 NA FAM72C SRGAP2D NA NA NA NA NA -LINC00869--FAM72C(2579)/SRGAP2D(543) BS_1NPD7PVG 1.49968891920194 -0.152653428137725 NA 2.08116750748043 no change no change NA differentially expressed 1:149607554 1:143974544 ARRIBA other 2 0 medium [],duplication LINC00869 NA FAM72C SRGAP2D NA NA NA NA NA -LINC00869--FAM72C(2579)/SRGAP2D(543) BS_273HKCT4 1.35571581737168 -0.187886529647178 NA 2.36827031032716 no change no change NA differentially expressed 1:149607554 1:143974544 ARRIBA other 3 0 medium [],duplication LINC00869 NA FAM72C SRGAP2D NA NA NA NA NA -LINC00869--FAM72C(2579)/SRGAP2D(543) BS_5CMGN56B 1.3579090476967 -0.674695287298202 NA 1.90758034071256 no change no change NA no change 1:149607554 1:143974544 ARRIBA other 2 0 medium [],duplication LINC00869 NA FAM72C SRGAP2D NA NA NA NA NA -LINC00869--FAM72C(2579)/SRGAP2D(543) BS_FJWZ3M7V 1.73339420389034 -0.518877272019296 NA 2.30957015291534 no change no change NA differentially expressed 1:149607554 1:143974544 ARRIBA other 3 0 medium [],duplication LINC00869 NA FAM72C SRGAP2D NA NA NA NA NA -LINC00869--FAM72C(2579)/SRGAP2D(543) BS_GV3NZ9QD 0.731228018806497 -0.295374913047222 NA 2.5170419647919 no change no change NA differentially expressed 1:149607554 1:143974544 ARRIBA other 2 0 medium [],duplication LINC00869 NA FAM72C SRGAP2D NA NA NA NA NA -LINC00869--FAM72C(2579)/SRGAP2D(543) BS_GYA4V1RD 0.48587799525166 -0.25924223226417 NA 1.94780615921184 no change no change NA no change 1:149607554 1:143974544 ARRIBA other 2 0 medium [],duplication LINC00869 NA FAM72C SRGAP2D NA NA NA NA NA -LINC00869--FAM72C(2579)/SRGAP2D(543) BS_MKM0EEN1 0.382022893151767 3.71641309740939 NA 1.99305808461503 no change differentially expressed NA no change 1:149607554 1:143974544 ARRIBA other 2 0 medium [],duplication LINC00869 NA FAM72C SRGAP2D NA NA NA NA NA -LINC00907--LINC00907 BS_90B22NGP 7.49290017682983 7.49290017682983 NA NA differentially expressed differentially expressed NA NA 18:42454989 18:42453932 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.53Mb]],duplication/non-canonical_splicing LINC00907 NA LINC00907 NA NA NA NA NA NA -LINC00907--LINC00907 BS_B8T7M0WV 4.98952771798383 4.98952771798383 NA NA differentially expressed differentially expressed NA NA 18:42454989 18:42453932 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.53Mb]],duplication/non-canonical_splicing LINC00907 NA LINC00907 NA NA NA NA NA NA -LINC00907--LINC00907 BS_KN92S7YQ 5.48563009887332 5.48563009887332 NA NA differentially expressed differentially expressed NA NA 18:42454989 18:42453932 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.53Mb]],duplication/non-canonical_splicing LINC00907 NA LINC00907 NA NA NA NA NA NA -LINC00907--LINC00907 BS_N6NE6B3W 4.58353079440487 4.58353079440487 NA NA differentially expressed differentially expressed NA NA 18:42454989 18:42453932 ARRIBA other 14 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.53Mb]],duplication/non-canonical_splicing LINC00907 NA LINC00907 NA NA NA NA NA NA -LINC00907--LINC00907 BS_NKRYMHEP 5.08707641387204 5.08707641387204 NA NA differentially expressed differentially expressed NA NA 18:42454989 18:42453932 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.53Mb]],duplication/non-canonical_splicing LINC00907 NA LINC00907 NA NA NA NA NA NA -LINC00907--LINC00907 BS_SFKZSJN1 7.92425895413871 7.92425895413871 NA NA differentially expressed differentially expressed NA NA 18:42454989 18:42453932 ARRIBA other 11 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.53Mb]],duplication/non-canonical_splicing LINC00907 NA LINC00907 NA NA NA NA NA NA -LINC00907--LINC00907 BS_ZRM0W01M 3.59239531233673 3.59239531233673 NA NA differentially expressed differentially expressed NA NA 18:42454989 18:42453932 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.53Mb]],duplication/non-canonical_splicing LINC00907 NA LINC00907 NA NA NA NA NA NA -LINC00907--LINC00907 BS_ZV68CES9 22.1866926737944 22.1866926737944 NA NA differentially expressed differentially expressed NA NA 18:42454989 18:42453932 ARRIBA other 33 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.53Mb]],duplication/non-canonical_splicing LINC00907 NA LINC00907 NA NA NA NA NA NA -LINC00958--AC084859.1 BS_X4X1SFSE 4.14168355574544 NA NA NA differentially expressed NA NA NA 11:12986040 11:13001226 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11542]],duplication LINC00958 NA AC084859.1 NA NA NA NA NA NA -LINC00969--MUC20P1(8166)/AC233280.19(6789) BS_M1T1K5WV 0.996127878234704 NA NA NA no change NA NA NA 3:195729739 3:195628399 ARRIBA other 3 0 medium [],duplication LINC00969 NA MUC20P1 AC233280.19 NA NA NA NA NA -LINC01003--AC079791.1(178887)/LINC02476(346520) BS_GYA4V1RD 1.28475798296643 NA NA NA no change NA NA NA 7:152464212 7:119358036 ARRIBA other 2 2 medium [],deletion LINC01003 NA AC079791.1 LINC02476 NA NA NA NA NA -LINC01013--AL021408.1 BS_2A5R9MEJ 2.96702025022198 NA NA NA differentially expressed NA NA NA 6:132134483 6:132098931 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA -LINC01013--AL021408.1 BS_7BTZQKYY 0.691773899761465 NA NA NA no change NA NA NA 6:132134483 6:132090446 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA -LINC01013--AL021408.1 BS_AMQGM1V9 0.401169673960206 NA NA NA no change NA NA NA 6:132134483 6:132090446 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA -LINC01013--AL021408.1 BS_B1HVNV0T 5.52178622458364 NA NA NA differentially expressed NA NA NA 6:132134483 6:132090446 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA -LINC01013--AL021408.1 BS_B1HVNV0T 5.52178622458364 NA NA NA differentially expressed NA NA NA 6:132134483 6:132098931 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA -LINC01013--AL021408.1 BS_EMYET8F4 7.49123531949377 NA NA NA differentially expressed NA NA NA 6:132134483 6:132098931 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA -LINC01013--AL021408.1 BS_FEV5A0HN 6.90699072478445 NA NA NA differentially expressed NA NA NA 6:132134483 6:132098931 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA -LINC01013--AL021408.1 BS_FWMJPKCV 2.52427786710663 NA NA NA differentially expressed NA NA NA 6:132134483 6:132090446 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA -LINC01013--AL021408.1 BS_GV3NZ9QD 3.8543726944685 NA NA NA differentially expressed NA NA NA 6:132134483 6:132090446 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA -LINC01013--AL021408.1 BS_GV3NZ9QD 3.8543726944685 NA NA NA differentially expressed NA NA NA 6:132134483 6:132098931 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA -LINC01013--AL021408.1 BS_KM2EX0K6 3.59222803643023 NA NA NA differentially expressed NA NA NA 6:132134483 6:132090446 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA -LINC01013--AL021408.1 BS_M1T1K5WV 3.06488435593401 NA NA NA differentially expressed NA NA NA 6:132134483 6:132098931 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA -LINC01013--AL021408.1 BS_Z6BWR941 2.52427786710663 NA NA NA differentially expressed NA NA NA 6:132134483 6:132090446 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA -LINC01013--AL021408.1 BS_Z6BWR941 2.52427786710663 NA NA NA differentially expressed NA NA NA 6:132134483 6:132098931 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA -LINC01019--LINC01019(30464)/IRX1(29496) BS_03FT4S8B 3.4055349499086 3.4055349499086 NA 6.8502377689492 differentially expressed differentially expressed NA differentially expressed 5:3531753 5:3566558 ARRIBA other 2 1 high [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA -LINC01019--LINC01019(30464)/IRX1(29496) BS_7BTZQKYY 31.4216398145067 31.4216398145067 NA 5.39708889782322 differentially expressed differentially expressed NA differentially expressed 5:3531753 5:3566558 ARRIBA other 7 2 high [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA -LINC01019--LINC01019(30464)/IRX1(29496) BS_D3YBV7KB 0.771235146775597 0.771235146775597 NA 4.20599570593755 no change no change NA differentially expressed 5:3531753 5:3566558 ARRIBA other 3 0 high [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA -LINC01019--LINC01019(30464)/IRX1(29496) BS_DSS3S5XD 2.88866391578655 2.88866391578655 NA 2.28314213622828 differentially expressed differentially expressed NA differentially expressed 5:3531753 5:3566558 ARRIBA other 3 0 high [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA -LINC01019--LINC01019(30464)/IRX1(29496) BS_HZ707C55 16.607086272209 16.607086272209 NA 5.74845944721095 differentially expressed differentially expressed NA differentially expressed 5:3531753 5:3566558 ARRIBA other 3 0 medium [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA -LINC01019--LINC01019(30464)/IRX1(29496) BS_Q5WZYWCT 20.5127211224185 20.5127211224185 NA 3.76368349000837 differentially expressed differentially expressed NA differentially expressed 5:3531753 5:3566558 ARRIBA other 3 0 high [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA -LINC01019--LINC01019(30464)/IRX1(29496) BS_W4HGV6E7 8.32365756925458 8.32365756925458 NA 5.7143118992483 differentially expressed differentially expressed NA differentially expressed 5:3531753 5:3566558 ARRIBA other 3 1 high [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA -LINC01019--LINC01019(30464)/IRX1(29496) BS_YE1MAQYJ 5.91950427034533 5.91950427034533 NA 5.44623020986599 differentially expressed differentially expressed NA differentially expressed 5:3531753 5:3566558 ARRIBA other 5 1 high [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA -LINC01019--LINC01019(40751)/IRX1(19209) BS_3F4FQJMR 20.8884656577697 20.8884656577697 NA 3.44718541873005 differentially expressed differentially expressed NA differentially expressed 5:3418771 5:3576845 ARRIBA other 2 1 medium [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA -LINC01019--LINC01019(40751)/IRX1(19209) BS_W4HGV6E7 8.32365756925458 8.32365756925458 NA 5.7143118992483 differentially expressed differentially expressed NA differentially expressed 5:3531753 5:3576845 ARRIBA other 4 0 high [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA -LINC01037--LINC01036 BS_HB03GSHF 20.5250960731591 31.4555332480816 NA NA differentially expressed differentially expressed NA NA 1:187443726 1:187303466 ARRIBA other 2 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr1:0.08Mb],LOCAL_REARRANGEMENT:+:[83283]],duplication LINC01037 NA LINC01036 NA NA NA NA NA NA -LINC01060--FAM149A BS_X91K8KMG 4.82255868210792 0.332010635479512 NA NA differentially expressed no change NA NA 4:188485865 4:186149173 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr4:2.23Mb]],duplication LINC01060 NA FAM149A NA NA NA NA NA NA -LINC01087--MED15P4(16025)/POTEKP(38739) BS_VA5T4KAA 146.059929385726 30.9683745004851 NA 456.241286025161 differentially expressed differentially expressed NA differentially expressed 2:131639178 2:131553013 ARRIBA other 5 0 medium [],duplication LINC01087 NA MED15P4 POTEKP NA NA NA NA NA -LINC01105(300468)/AC017053.1(11211)--AC017053.1 BS_052PZFMK 1.9668457770103 403.517008391012 403.517008391012 NA no change differentially expressed differentially expressed NA 2:6301743 2:6314946 ARRIBA other 12 1 high [],duplication LINC01105 AC017053.1 AC017053.1 NA NA NA NA NA NA -LINC01122--LINC01122 BS_KX6J8TRK -0.129344347772531 -0.129344347772531 NA NA no change no change NA NA 2:59022982 2:58985438 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.64Mb]],duplication LINC01122 NA LINC01122 NA NA NA NA NA NA -LINC01122--PIKFYVE BS_RRAEQZ97 -0.801792626893305 2.47109189303138 NA NA no change differentially expressed NA NA 2:58428464 2:208271511 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr2:149.20Mb]],deletion LINC01122 NA PIKFYVE NA NA NA NA NA NA -LINC01176--ZNRF2 BS_6MY8W3H0 -1.53674212084021 2.90768734482449 NA NA no change differentially expressed NA NA 7:30391035 7:30350761 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_REARRANGEMENT:+:[23193]],duplication LINC01176 NA ZNRF2 NA NA NA NA NA NA -LINC01176--ZNRF2 BS_6MY8W3H0 -1.53674212084021 2.90768734482449 NA NA no change differentially expressed NA NA 7:30391035 7:30366035 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_REARRANGEMENT:+:[23193]],duplication LINC01176 NA ZNRF2 NA NA NA NA NA NA -LINC01176--ZNRF2 BS_9F09XV62 0.524755457253409 4.42787451625826 NA NA no change differentially expressed NA NA 7:30391035 7:30362377 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_REARRANGEMENT:+:[23193]],duplication LINC01176 NA ZNRF2 NA NA NA NA NA NA -LINC01176--ZNRF2 BS_HCP5C912 -0.960602613030201 2.700759508902 NA NA no change differentially expressed NA NA 7:30391035 7:30350761 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_REARRANGEMENT:+:[23193]],duplication LINC01176 NA ZNRF2 NA NA NA NA NA NA -LINC01176--ZNRF2 BS_HCP5C912 -0.960602613030201 2.700759508902 NA NA no change differentially expressed NA NA 7:30391035 7:30362377 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_REARRANGEMENT:+:[23193]],duplication LINC01176 NA ZNRF2 NA NA NA NA NA NA -LINC01176--ZNRF2 BS_N6NE6B3W -0.536511717747318 4.23082358655089 NA NA no change differentially expressed NA NA 7:30391035 7:30350761 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_REARRANGEMENT:+:[23193]],duplication LINC01176 NA ZNRF2 NA NA NA NA NA NA -LINC01176--ZNRF2 BS_N6NE6B3W -0.536511717747318 4.23082358655089 NA NA no change differentially expressed NA NA 7:30391035 7:30366035 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_REARRANGEMENT:+:[23193]],duplication LINC01176 NA ZNRF2 NA NA NA NA NA NA -LINC01192--LINC01192 BS_ZXYDSBM9 313.403932001907 313.403932001907 NA NA differentially expressed differentially expressed NA NA 3:163177901 3:163187264 ARRIBA other 15 4 low [SELFIE,INTRACHROMOSOMAL[chr3:0.23Mb]],duplication/non-canonical_splicing LINC01192 NA LINC01192 NA NA NA NA NA NA -LINC01194--ZBBX BS_KE56MMY0 214.331621574898 0.923835360491267 NA NA differentially expressed no change NA NA 5:12595778 3:167282495 ARRIBA other 7 0 high [INTERCHROMOSOMAL[chr5--chr3]],translocation LINC01194 NA ZBBX NA NA NA NA NA NA -LINC01194--ZBBX BS_KE56MMY0 214.331621574898 0.923835360491267 NA NA differentially expressed no change NA NA 5:12595778 3:167298458 ARRIBA other 6 0 high [INTERCHROMOSOMAL[chr5--chr3]],translocation LINC01194 NA ZBBX NA NA NA NA NA NA -LINC01194--ZBBX BS_KE56MMY0 214.331621574898 0.923835360491267 NA NA differentially expressed no change NA NA 5:12575052 3:167282495 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr5--chr3]],translocation LINC01194 NA ZBBX NA NA NA NA NA NA -LINC01237--RHBDD1 BS_Q9V7A95C 7.5623671107382 5.84515962282261 NA NA differentially expressed differentially expressed NA NA 2:241882635 2:226980183 ARRIBA other 9 1 high [INTRACHROMOSOMAL[chr2:14.88Mb]],inversion/3'-3' LINC01237 NA RHBDD1 NA NA NA NA NA NA -LINC01250--AC019118.2 BS_1607397Q 9.74199728264551 NA NA NA differentially expressed NA NA NA 2:3125295 2:3132166 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:-:[5555]],duplication LINC01250 NA AC019118.2 NA NA NA NA NA NA -LINC01255--PSAT1 BS_MV6ASWV9 -0.111003607206135 0.971946935115089 NA NA no change no change NA NA 18:11495474 9:78300602 ARRIBA other 10 0 high [INTERCHROMOSOMAL[chr18--chr9]],translocation/3'-3' LINC01255 NA PSAT1 NA NA NA NA NA NA -LINC01410--LINC01410(5075)/AL512625.2(19187) BS_BWBDH9GM 2.87327798830054 2.87327798830054 NA NA differentially expressed differentially expressed NA NA 9:62806330 9:62818561 ARRIBA other 2 0 low [],inversion LINC01410 NA LINC01410 AL512625.2 NA NA NA NA NA -LINC01410--LINC01410(5075)/AL512625.2(19187) BS_C6SKJG3N 2.55833810983245 2.55833810983245 NA NA differentially expressed differentially expressed NA NA 9:62806330 9:62818561 ARRIBA other 2 0 low [],inversion LINC01410 NA LINC01410 AL512625.2 NA NA NA NA NA -LINC01410--LINC01410(5075)/AL512625.2(19187) BS_MF9X3PKH 4.10187901834393 4.10187901834393 NA NA differentially expressed differentially expressed NA NA 9:62806330 9:62818561 ARRIBA other 1 1 medium [],inversion LINC01410 NA LINC01410 AL512625.2 NA NA NA NA NA -LINC01410--LINC01410(5075)/AL512625.2(19187) BS_NDN62H0S 3.38217504817984 3.38217504817984 NA NA differentially expressed differentially expressed NA NA 9:62806330 9:62818561 ARRIBA other 2 2 medium [],inversion LINC01410 NA LINC01410 AL512625.2 NA NA NA NA NA -LINC01473--LINC01473(3137)/AC104058.1(76579) BS_M1T1K5WV 6.50371092302223 6.50371092302223 NA 5.74348782564034 differentially expressed differentially expressed NA differentially expressed 2:186039500 2:186086370 ARRIBA other 4 0 medium [],duplication LINC01473 NA LINC01473 AC104058.1 NA NA NA NA NA -LINC01473--LINC01473(3137)/AC104058.1(76579) BS_TW8DQH8J 6.03881388261948 6.03881388261948 NA 11.1599873731903 differentially expressed differentially expressed NA differentially expressed 2:186039500 2:186086370 ARRIBA other 1 0 low [],duplication LINC01473 NA LINC01473 AC104058.1 NA NA NA NA NA -LINC01481--AC025254.1(134053)/AC090049.2(56196) BS_Q9V7A95C 2.3671703538023 NA NA NA differentially expressed NA NA NA 12:70242797 12:91814926 ARRIBA other 2 1 medium [],inversion LINC01481 NA AC025254.1 AC090049.2 NA NA NA NA NA -LINC01481--CPSF6 BS_Q9V7A95C 2.3671703538023 10.1564656845453 NA NA differentially expressed differentially expressed NA NA 12:70242797 12:69251129 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr12:0.63Mb]],inversion LINC01481 NA CPSF6 NA NA NA NA NA NA -LINC01483(30849)/LINC01497(27858)--LINC01483 BS_GCQFGDTX 34.9250753922415 34.9250753922415 0.487440267157121 NA differentially expressed differentially expressed no change NA 17:69933849 17:69827945 ARRIBA other 1 2 medium [],duplication LINC01483 LINC01497 LINC01483 NA NA NA NA NA NA -LINC01515--PCGF6 BS_MX23ZY0Y 7.3510656964377 1.30280733528132 NA NA differentially expressed no change NA NA 10:65615761 10:103348944 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:37.53Mb]],inversion LINC01515 NA PCGF6 NA NA TranscriptionFactor NA NA NA -LINC01563(564)/DHRS7B(32185)--LINC01563 BS_9V633J1X 5.53714076990282 5.53714076990282 1.83240591245915 NA differentially expressed differentially expressed no change NA 17:21091179 17:21090268 ARRIBA other 5 1 low [],duplication LINC01563 DHRS7B LINC01563 NA NA NA NA NA NA -LINC01563(564)/DHRS7B(32185)--LINC01563 BS_KVNGNETA 3.37662707605554 3.37662707605554 0.0160155289454062 NA differentially expressed differentially expressed no change NA 17:21091179 17:21090268 ARRIBA other 3 0 low [],duplication LINC01563 DHRS7B LINC01563 NA NA NA NA NA NA -LINC01563(564)/DHRS7B(32185)--LINC01563 BS_QEYPFYHD 3.35378662388354 3.35378662388354 -1.46863661908231 NA differentially expressed differentially expressed no change NA 17:21091179 17:21090268 ARRIBA other 11 1 low [],duplication LINC01563 DHRS7B LINC01563 NA NA NA NA NA NA -LINC01563(564)/DHRS7B(32185)--LINC01563 BS_W9AT0MR7 4.38239234871972 4.38239234871972 0.900105080259941 NA differentially expressed differentially expressed no change NA 17:21091179 17:21090268 ARRIBA other 7 0 medium [],duplication LINC01563 DHRS7B LINC01563 NA NA NA NA NA NA -LINC01563(564)/DHRS7B(32185)--LINC01563 BS_Z7PKVY9J 2.97528831266729 2.97528831266729 -1.19784371627663 NA differentially expressed differentially expressed no change NA 17:21091179 17:21090268 ARRIBA other 3 0 low [],duplication LINC01563 DHRS7B LINC01563 NA NA NA NA NA NA -LINC01571(6547)/C16orf97(225767)--LINC01571 BS_7BTZQKYY 7.34634008106138 7.34634008106138 -0.100218386904401 NA differentially expressed differentially expressed no change NA 16:51779720 16:51771564 ARRIBA other 2 0 low [],duplication LINC01571 C16orf97 LINC01571 NA NA NA NA NA NA -LINC01630--SCHIP1 BS_4B0BAVTX NA 0.733987856518847 NA NA NA no change NA NA 18:51392257 3:159886207 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr18--chr3]],translocation LINC01630 NA SCHIP1 NA NA NA NA NA NA -LINC01630--SCHIP1 BS_4B0BAVTX NA 0.733987856518847 NA NA NA no change NA NA 18:51387301 3:159886207 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr18--chr3]],translocation LINC01630 NA SCHIP1 NA NA NA NA NA NA -LINC01684--AP000470.1(114811)/LINC01689(1397) BS_5P1TN10Z NA NA NA NA NA NA NA NA 21:24441913 21:24303153 ARRIBA other 2 0 medium [],duplication LINC01684 NA AP000470.1 LINC01689 NA NA NA NA NA -LINC01684--LINC01689 BS_TV5B86ZD NA NA NA NA NA NA NA NA 21:24441913 21:24303153 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr21:0.11Mb]],duplication/5'-5' LINC01684 NA LINC01689 NA NA NA NA NA NA -LINC01748--LINC01748 BS_42Y3YANN NA NA NA NA NA NA NA NA 1:60595538 1:60600250 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing LINC01748 NA LINC01748 NA NA NA NA NA NA -LINC01748--LINC01748 BS_52C576HH NA NA NA NA NA NA NA NA 1:60595538 1:60600250 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing LINC01748 NA LINC01748 NA NA NA NA NA NA -LINC01748--LINC01748 BS_WFD0GE5X NA NA NA NA NA NA NA NA 1:60528919 1:60600250 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing LINC01748 NA LINC01748 NA NA NA NA NA NA -LINC01748--LINC01748 BS_Y8D1F5WW NA NA NA NA NA NA NA NA 1:60595538 1:60600250 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing LINC01748 NA LINC01748 NA NA NA NA NA NA -LINC01881--NGEF BS_81SP2HX4 NA 0.535806713362737 NA NA NA no change NA NA 2:242095027 2:232974964 ARRIBA other 17 0 high [INTRACHROMOSOMAL[chr2:9.08Mb]],inversion LINC01881 NA NGEF NA NA NA NA NA NA -LINC01881--NGEF BS_81SP2HX4 NA 0.535806713362737 NA NA NA no change NA NA 2:242088801 2:232974964 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr2:9.08Mb]],inversion LINC01881 NA NGEF NA NA NA NA NA NA -LINC01909--SOCS6 BS_TE0GVDNG NA 4.98872258504128 NA NA NA differentially expressed NA NA 18:70336140 18:70324543 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr18:0.01Mb],LOCAL_REARRANGEMENT:+:[5239]],duplication LINC01909 NA SOCS6 NA NA NA NA NA NA -LINC01933--GLRA1(21797)/LINC01933(2932) BS_JTMXAMB7 NA 10.85985656554 NA NA NA differentially expressed NA NA 5:152270360 5:151946639 ARRIBA other 1 3 medium [],duplication LINC01933 NA GLRA1 LINC01933 NA NA NA NA NA -LINC01933--GLRA1(21797)/LINC01933(2932) BS_TGW6HC4X NA 10.0947604990221 NA NA NA differentially expressed NA NA 5:152270360 5:151946639 ARRIBA other 2 0 medium [],duplication LINC01933 NA GLRA1 LINC01933 NA NA NA NA NA -LINC01949(7222)/RASA1(20521)--AC109492.1 BS_3TQSE8HF NA NA 1.16507994135022 NA NA NA no change NA 5:87247367 5:87137454 ARRIBA other 6 0 high [],duplication LINC01949 RASA1 AC109492.1 NA NA NA Oncogene NA NA -LINC01959(17812)/AC011431.1(70715)--AC034206.1 BS_9V633J1X NA NA -0.0294627825494395 NA NA NA no change NA 5:135671747 5:135629237 ARRIBA other 1 1 low [],duplication LINC01959 AC011431.1 AC034206.1 NA NA NA NA NA NA -LINC01959(17812)/AC011431.1(70715)--AC034206.1 BS_CHDGRYHJ NA NA -0.0294627825494395 NA NA NA no change NA 5:135671747 5:135629237 ARRIBA other 3 0 medium [],duplication LINC01959 AC011431.1 AC034206.1 NA NA NA NA NA NA -LINC01959(17812)/AC011431.1(70715)--AC034206.1 BS_J8G4SH4Z NA NA -0.0294627825494395 NA NA NA no change NA 5:135671747 5:135629237 ARRIBA other 5 0 medium [],duplication LINC01959 AC011431.1 AC034206.1 NA NA NA NA NA NA -LINC01980--POU2F1 BS_KE56MMY0 NA 1.70461149515535 NA NA NA no change NA NA 3:27824748 1:167365467 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr3--chr1]],translocation LINC01980 NA POU2F1 NA NA TranscriptionFactor NA NA NA -LINC01980(25473)/LINC01967(80436)--LINC01967 BS_M86ECPHK NA NA NA NA NA NA NA NA 3:27916774 3:28028603 ARRIBA other 1 3 medium [],duplication LINC01980 LINC01967 LINC01967 NA NA NA NA NA NA -LINC01987(47770)/LINC01973(102698)--LRTOMT BS_FAVRBEW7 NA 4.17189302265495 NA NA NA differentially expressed NA NA 17:77776329 11:72094948 ARRIBA other 8 0 medium [],translocation LINC01987 LINC01973 LRTOMT NA NA NA NA NA NA -LINC01987(47770)/LINC01973(102698)--STON2 BS_53M8PP88 NA 3.61762398370845 NA NA NA differentially expressed NA NA 17:77776329 14:81278739 ARRIBA other 4 0 medium [],translocation LINC01987 LINC01973 STON2 NA NA NA NA NA NA -LINC02006--ARHGEF26-AS1 BS_AGS1HHGF NA 0.842578088685429 NA NA NA no change NA NA 3:153927261 3:154030379 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr3:0.04Mb],LOCAL_REARRANGEMENT:-:[44215]],duplication LINC02006 NA ARHGEF26-AS1 NA NA NA NA NA NA -LINC02006--ARHGEF26-AS1 BS_AGS1HHGF NA 0.842578088685429 NA NA NA no change NA NA 3:153927261 3:154030376 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr3:0.04Mb],LOCAL_REARRANGEMENT:-:[44215]],duplication LINC02006 NA ARHGEF26-AS1 NA NA NA NA NA NA -LINC02006--ARHGEF26-AS1 BS_HZ707C55 NA 0.554966122708502 NA NA NA no change NA NA 3:153927261 3:154030379 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr3:0.04Mb],LOCAL_REARRANGEMENT:-:[44215]],duplication LINC02006 NA ARHGEF26-AS1 NA NA NA NA NA NA -LINC02006(24137)/U8(3044)--ARHGEF26-AS1 BS_Z85M2R3N NA 1.12330164614955 -0.16515650414899 NA NA no change no change NA 3:154004323 3:154030376 ARRIBA other 1 1 low [],duplication LINC02006 U8 ARHGEF26-AS1 NA NA NA NA NA NA -LINC02006(24445)/U8(2736)--ARHGEF26-AS1 BS_AGS1HHGF NA 0.842578088685429 -0.16515650414899 NA NA no change no change NA 3:154004631 3:154030379 ARRIBA other 2 0 medium [],duplication LINC02006 U8 ARHGEF26-AS1 NA NA NA NA NA NA -LINC02006(24445)/U8(2736)--ARHGEF26-AS1 BS_HZ707C55 NA 0.554966122708502 -0.16515650414899 NA NA no change no change NA 3:154004631 3:154030379 ARRIBA other 2 0 medium [],duplication LINC02006 U8 ARHGEF26-AS1 NA NA NA NA NA NA -LINC02008--GOLPH3 BS_6JHXXVR7 NA 3.59915106468011 NA NA NA differentially expressed NA NA 3:81986381 5:32143880 ARRIBA other 4 1 medium [INTERCHROMOSOMAL[chr3--chr5]],translocation LINC02008 NA GOLPH3 NA NA NA NA NA NA -LINC02008--GOLPH3 BS_6JHXXVR7 NA 3.59915106468011 NA NA NA differentially expressed NA NA 3:81986381 5:32135686 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr3--chr5]],translocation LINC02008 NA GOLPH3 NA NA NA NA NA NA -LINC02008--UBL5P1 BS_6JHXXVR7 NA NA NA NA NA NA NA NA 3:81986381 5:29600702 ARRIBA other 5 0 high [INTERCHROMOSOMAL[chr3--chr5]],translocation/5'-5' LINC02008 NA UBL5P1 NA NA NA NA NA NA -LINC02055--AC013546.1 BS_SAA624A4 NA NA NA NA NA NA NA NA 8:136797370 8:136529795 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr8:0.00Mb],LOCAL_REARRANGEMENT:+:[922]],duplication LINC02055 NA AC013546.1 NA NA NA NA NA NA -LINC02055--AC013546.1 BS_W4HGV6E7 NA NA NA NA NA NA NA NA 8:136537059 8:136529795 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr8:0.00Mb],LOCAL_REARRANGEMENT:+:[922]],duplication LINC02055 NA AC013546.1 NA NA NA NA NA NA -LINC02055--AC013546.1 BS_W4HGV6E7 NA NA NA NA NA NA NA NA 8:136797370 8:136529795 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.00Mb],LOCAL_REARRANGEMENT:+:[922]],duplication LINC02055 NA AC013546.1 NA NA NA NA NA NA -LINC02055--AC013546.1 BS_WMEHNDSK NA NA NA NA NA NA NA NA 8:136537059 8:136529795 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:0.00Mb],LOCAL_REARRANGEMENT:+:[922]],duplication LINC02055 NA AC013546.1 NA NA NA NA NA NA -LINC02055--AC013546.1 BS_WMEHNDSK NA NA NA NA NA NA NA NA 8:136537059 8:136515966 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.00Mb],LOCAL_REARRANGEMENT:+:[922]],duplication LINC02055 NA AC013546.1 NA NA NA NA NA NA -LINC02055--ZFHX4-AS1 BS_WMEHNDSK NA 2.05120480474657 NA NA NA differentially expressed NA NA 8:136537059 8:76616451 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr8:59.85Mb]],inversion LINC02055 NA ZFHX4-AS1 NA NA NA NA NA NA -LINC02055--ZFHX4-AS1 BS_WMEHNDSK NA 2.05120480474657 NA NA NA differentially expressed NA NA 8:136619345 8:76616451 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr8:59.85Mb]],inversion LINC02055 NA ZFHX4-AS1 NA NA NA NA NA NA -LINC02056--AC063979.2 BS_Z85M2R3N NA NA NA NA NA NA NA NA 5:72660567 5:72690704 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr5:0.03Mb],LOCAL_REARRANGEMENT:-:[26443]],duplication LINC02056 NA AC063979.2 NA NA NA NA NA NA -LINC02082--EGFEM1P BS_3EVSN5QD NA 9.82800834796665 NA NA NA differentially expressed NA NA 3:168910814 3:168821193 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:0.07Mb],LOCAL_REARRANGEMENT:+:[72767]],duplication LINC02082 NA EGFEM1P NA NA NA NA NA NA -LINC02082--EGFEM1P BS_B3M5SGPA NA 7.83612452328482 NA NA NA differentially expressed NA NA 3:168910814 3:168821193 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr3:0.07Mb],LOCAL_REARRANGEMENT:+:[72767]],duplication LINC02082 NA EGFEM1P NA NA NA NA NA NA -LINC02100--LINC02100(33343)/UBE2V1P12(107106) BS_VMEX27TN NA NA NA 221.485527105574 NA NA NA differentially expressed 5:18745998 5:18779516 ARRIBA other 5 1 low [],duplication LINC02100 NA LINC02100 UBE2V1P12 NA NA NA NA NA -LINC02107--AC034226.1(55680)/LINC02107(3053) BS_W644VEVE NA NA NA NA NA NA NA NA 5:38029056 5:38022644 ARRIBA other 19 3 high [],duplication LINC02107 NA AC034226.1 LINC02107 NA NA NA NA NA -LINC02125--CNTNAP4 BS_70FFPA51 NA 2.3699993788287 NA NA NA differentially expressed NA NA 16:76635623 16:76535545 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr16:0.08Mb],LOCAL_REARRANGEMENT:+:[75760]],duplication LINC02125 NA CNTNAP4 NA NA NA NA NA NA -LINC02125--CNTNAP4 BS_8NY9J9NQ NA 1.02562292296679 NA NA NA no change NA NA 16:76635623 16:76535545 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr16:0.08Mb],LOCAL_REARRANGEMENT:+:[75760]],duplication LINC02125 NA CNTNAP4 NA NA NA NA NA NA -LINC02125--CNTNAP4 BS_8NY9J9NQ NA 1.02562292296679 NA NA NA no change NA NA 16:76635623 16:76521140 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr16:0.08Mb],LOCAL_REARRANGEMENT:+:[75760]],duplication LINC02125 NA CNTNAP4 NA NA NA NA NA NA -LINC02125--CNTNAP4 BS_8NY9J9NQ NA 1.02562292296679 NA NA NA no change NA NA 16:76655664 16:76553283 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr16:0.08Mb],LOCAL_REARRANGEMENT:+:[75760]],duplication LINC02125 NA CNTNAP4 NA NA NA NA NA NA -LINC02125--CNTNAP4 BS_8NY9J9NQ NA 1.02562292296679 NA NA NA no change NA NA 16:76635623 16:76553283 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr16:0.08Mb],LOCAL_REARRANGEMENT:+:[75760]],duplication LINC02125 NA CNTNAP4 NA NA NA NA NA NA -LINC02125--CNTNAP4 BS_B1HVNV0T NA 0.864711655176287 NA NA NA no change NA NA 16:76635623 16:76535545 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr16:0.08Mb],LOCAL_REARRANGEMENT:+:[75760]],duplication LINC02125 NA CNTNAP4 NA NA NA NA NA NA -LINC02125--CNTNAP4 BS_NFRXNAFE NA -0.249423532851851 NA NA NA no change NA NA 16:76635623 16:76535545 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr16:0.08Mb],LOCAL_REARRANGEMENT:+:[75760]],duplication LINC02125 NA CNTNAP4 NA NA NA NA NA NA -LINC02125--CNTNAP4 BS_X4X1SFSE NA -1.65773210900863 NA NA NA no change NA NA 16:76635623 16:76535545 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr16:0.08Mb],LOCAL_REARRANGEMENT:+:[75760]],duplication LINC02125 NA CNTNAP4 NA NA NA NA NA NA -LINC02145--LINC02145(29865)/MED10(2132) BS_N6NE6B3W NA NA NA -1.55972970406218 NA NA NA no change 5:6337150 5:6369749 ARRIBA other 1 2 high [],duplication LINC02145 NA LINC02145 MED10 NA NA NA NA NA -LINC02145--MED10 BS_KVNGNETA NA -1.9549377570847 NA NA NA no change NA NA 5:6337150 5:6372601 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr5:0.03Mb],LOCAL_REARRANGEMENT:-:[31997]],duplication LINC02145 NA MED10 NA NA NA NA NA NA -LINC02203--LINC02203 BS_1QXEC43H NA NA NA NA NA NA NA NA 15:21617244 15:21595606 ARRIBA other 15 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.10Mb]],duplication/non-canonical_splicing LINC02203 NA LINC02203 NA NA NA NA NA NA -LINC02203--LINC02203 BS_BPWEFR89 NA NA NA NA NA NA NA NA 15:21617244 15:21595606 ARRIBA other 16 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.10Mb]],duplication/non-canonical_splicing LINC02203 NA LINC02203 NA NA NA NA NA NA -LINC02203--LINC02203 BS_GR46VD0Q NA NA NA NA NA NA NA NA 15:21617244 15:21595606 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.10Mb]],duplication/non-canonical_splicing LINC02203 NA LINC02203 NA NA NA NA NA NA -LINC02203--LINC02203 BS_J8G4SH4Z NA NA NA NA NA NA NA NA 15:21617244 15:21595606 ARRIBA other 3 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.10Mb]],duplication/non-canonical_splicing LINC02203 NA LINC02203 NA NA NA NA NA NA -LINC02203--LINC02203 BS_RCC8BXVE NA NA NA NA NA NA NA NA 15:21617244 15:21595606 ARRIBA other 18 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.10Mb]],duplication/non-canonical_splicing LINC02203 NA LINC02203 NA NA NA NA NA NA -LINC02203--LINC02203 BS_VNWKNRY4 NA NA NA NA NA NA NA NA 15:21617244 15:21595606 ARRIBA other 10 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.10Mb]],duplication/non-canonical_splicing LINC02203 NA LINC02203 NA NA NA NA NA NA -LINC02203--LINC02203 BS_VPBMDMQX NA NA NA NA NA NA NA NA 15:21617244 15:21595606 ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.10Mb]],duplication/non-canonical_splicing LINC02203 NA LINC02203 NA NA NA NA NA NA -LINC02203(26417)/AC135068.4(3345)--LINC02203 BS_GR46VD0Q NA NA NA NA NA NA NA NA 15:21679693 15:21595606 ARRIBA other 3 0 medium [],duplication LINC02203 AC135068.4 LINC02203 NA NA NA NA NA NA -LINC02204--TLE3 BS_KXCY5BN5 NA 2.19426137596186 NA NA NA differentially expressed NA NA 15:70585875 15:70096261 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:0.47Mb]],deletion LINC02204 NA TLE3 NA NA NA NA NA NA -LINC02204--TLE3 BS_WWKNJSJ5 NA 3.71314783197363 NA NA NA differentially expressed NA NA 15:70585875 15:70096261 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:0.47Mb]],deletion LINC02204 NA TLE3 NA NA NA NA NA NA -LINC02204--TLE3(32715)/RNU6-745P(62345) BS_WWKNJSJ5 NA 3.71314783197363 NA NA NA differentially expressed NA NA 15:70585875 15:70130891 ARRIBA other 4 0 medium [],deletion LINC02204 NA TLE3 RNU6-745P NA NA NA NA NA -LINC02223--LINC02223 BS_M86ECPHK NA NA NA NA NA NA NA NA 5:17926959 5:17920227 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.27Mb]],duplication/non-canonical_splicing LINC02223 NA LINC02223 NA NA NA NA NA NA -LINC02246--NRIP1 BS_4NWHYH53 NA 5.572283044873 NA NA NA differentially expressed NA NA 21:14825522 21:15043573 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr21:0.04Mb],LOCAL_REARRANGEMENT:-:[42683]],duplication LINC02246 NA NRIP1 NA NA Oncogene NA NA NA -LINC02246--NRIP1 BS_DY9NTFQR NA 3.98177470604231 NA NA NA differentially expressed NA NA 21:14825522 21:15043573 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr21:0.04Mb],LOCAL_REARRANGEMENT:-:[42683]],duplication LINC02246 NA NRIP1 NA NA Oncogene NA NA NA -LINC02246--NRIP1 BS_F8N6CFQE NA 4.7024195584495 NA NA NA differentially expressed NA NA 21:14825522 21:15043573 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr21:0.04Mb],LOCAL_REARRANGEMENT:-:[42683]],duplication LINC02246 NA NRIP1 NA NA Oncogene NA NA NA -LINC02246--NRIP1 BS_RXN5T5YT NA 1.14669418175333 NA NA NA no change NA NA 21:14825522 21:15043573 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:0.04Mb],LOCAL_REARRANGEMENT:-:[42683]],duplication LINC02246 NA NRIP1 NA NA Oncogene NA NA NA -LINC02246--NRIP1 BS_RXN5T5YT NA 1.14669418175333 NA NA NA no change NA NA 21:14853274 21:15043574 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:0.04Mb],LOCAL_REARRANGEMENT:-:[42683]],duplication LINC02246 NA NRIP1 NA NA Oncogene NA NA NA -LINC02283(2443)/AC098587.1(17605)--AC097494.1 BS_TXZ7KHTQ NA NA NA NA NA NA NA NA 4:54358397 4:54836416 ARRIBA other 5 0 high [],inversion LINC02283 AC098587.1 AC097494.1 NA NA NA NA NA NA -LINC02302(15101)/DOCK11P1(62386)--AL161752.1 BS_5PV5N4HQ NA NA 2.9809971820022 NA NA NA differentially expressed NA 14:44797930 14:44393738 ARRIBA other 4 0 medium [],deletion LINC02302 DOCK11P1 AL161752.1 NA NA NA NA NA NA -LINC02302(15101)/DOCK11P1(62386)--AL161752.1 BS_S4V9E1XJ NA NA 7.65311539946094 NA NA NA differentially expressed NA 14:44797930 14:44393738 ARRIBA other 4 0 medium [],deletion LINC02302 DOCK11P1 AL161752.1 NA NA NA NA NA NA -LINC02319--AL118557.1(32055)/PTGDR(79479) BS_P78SMRBS NA NA NA 19.922788397476 NA NA NA differentially expressed 14:52123673 14:52188234 ARRIBA other 5 1 high [],duplication LINC02319 NA AL118557.1 PTGDR NA NA NA TumorSuppressorGene NA -LINC02319--AL118557.1(32055)/PTGDR(79479) BS_SDCNP7MW NA NA NA 16.8435048668935 NA NA NA differentially expressed 14:52123673 14:52188234 ARRIBA other 4 0 medium [],duplication LINC02319 NA AL118557.1 PTGDR NA NA NA TumorSuppressorGene NA -LINC02392(293471)/AC084365.1(23948)--RAB3IP BS_Q9V7A95C NA 3.86604576243911 NA NA NA differentially expressed NA NA 12:90593811 12:69755384 ARRIBA other 10 0 medium [],duplication LINC02392 AC084365.1 RAB3IP NA NA NA NA NA NA -LINC02397--AC025035.1(138275)/DLEU2_6(126031) BS_Q9V7A95C NA NA NA -0.453813863869477 NA NA NA no change 12:92467002 12:91506881 ARRIBA other 8 0 medium [],inversion LINC02397 NA AC025035.1 DLEU2_6 NA NA NA NA NA -LINC02436--TENM3 BS_C6ZZ3FY5 NA 3.99232720922156 NA NA NA differentially expressed NA NA 4:185055237 4:182714087 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:2.25Mb]],duplication LINC02436 NA TENM3 NA NA NA NA NA NA -LINC02449--FAM66C BS_063ERW0R NA 4.41935547425499 NA NA NA differentially expressed NA NA 12:8238302 12:8208859 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:0.02Mb],LOCAL_REARRANGEMENT:+:[19264]],duplication LINC02449 NA FAM66C NA NA NA NA NA NA -LINC02449--FAM66C BS_063ERW0R NA 4.41935547425499 NA NA NA differentially expressed NA NA 12:8235999 12:8215806 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:0.02Mb],LOCAL_REARRANGEMENT:+:[19264]],duplication LINC02449 NA FAM66C NA NA NA NA NA NA -LINC02449--FAM66C BS_30VC3R2Q NA 4.28118478684292 NA NA NA differentially expressed NA NA 12:8238302 12:8208859 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr12:0.02Mb],LOCAL_REARRANGEMENT:+:[19264]],duplication LINC02449 NA FAM66C NA NA NA NA NA NA -LINC02477(4407)/RPS14P7(227198)--LINC02477 BS_3NWQXPQV NA NA -0.0294627825494395 NA NA NA no change NA 4:160591224 4:160586246 ARRIBA other 9 0 high [],duplication LINC02477 RPS14P7 LINC02477 NA NA NA NA NA NA -LINC02477(4407)/RPS14P7(227198)--LINC02477 BS_G00FHF3Q NA NA -0.0294627825494395 NA NA NA no change NA 4:160591224 4:160539739 ARRIBA other 12 1 medium [],duplication LINC02477 RPS14P7 LINC02477 NA NA NA NA NA NA -LINC02506(2675)/LINC02353(192957)--LINC02506 BS_QEYPFYHD NA NA NA NA NA NA NA NA 4:32158081 4:32146053 ARRIBA other 21 1 low [],duplication LINC02506 LINC02353 LINC02506 NA NA NA NA NA NA -LINC02506(2675)/LINC02353(192957)--LINC02506 BS_V96WVE3Z NA NA NA NA NA NA NA NA 4:32158081 4:32146053 ARRIBA other 7 1 low [],duplication LINC02506 LINC02353 LINC02506 NA NA NA NA NA NA -LINC02546--DNHD1 BS_49FQXT2E NA -0.945338054653288 NA NA NA no change NA NA 11:29614095 11:6498939 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr11:23.00Mb]],deletion LINC02546 NA DNHD1 NA NA NA NA NA NA -LINC02552--LINC02552 BS_N6NE6B3W NA NA NA NA NA NA NA NA 11:104544699 11:104545149 ARRIBA other 30 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.16Mb]],duplication/non-canonical_splicing LINC02552 NA LINC02552 NA NA NA NA NA NA -LINC02552--LINC02552 BS_WRQHPSXQ NA NA NA NA NA NA NA NA 11:104544699 11:104545149 ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.16Mb]],duplication/non-canonical_splicing LINC02552 NA LINC02552 NA NA NA NA NA NA -LINCR-0001--AC104964.2 BS_7FWZ518S 1.03923997990147 NA NA NA no change NA NA NA 8:10480192 8:10436262 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:+:[36253]],duplication LINCR-0001 NA AC104964.2 NA NA NA NA NA NA -LINCR-0001--AC104964.2 BS_ME3HKN2C 1.30655419036573 NA NA NA no change NA NA NA 8:10480192 8:10436262 ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:+:[36253]],duplication LINCR-0001 NA AC104964.2 NA NA NA NA NA NA -LINCR-0001--AC104964.2 BS_N6NE6B3W 1.16378271521629 NA NA NA no change NA NA NA 8:10480192 8:10434886 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:+:[36253]],duplication LINCR-0001 NA AC104964.2 NA NA NA NA NA NA -LINCR-0001--AC104964.2 BS_ZRM0W01M 1.09501042864648 NA NA NA no change NA NA NA 8:10480192 8:10436262 ARRIBA other 3 2 high [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:+:[36253]],duplication LINCR-0001 NA AC104964.2 NA NA NA NA NA NA -LINCR-0001--AC104964.2(32504)/LINCR-0001(3749) BS_4NF35AF6 0.263335846284721 NA NA 0.263335846284721 no change NA NA no change 8:10477898 8:10470816 ARRIBA other 4 0 medium [],duplication LINCR-0001 NA AC104964.2 LINCR-0001 NA NA NA NA NA -LINCR-0001--AC104964.2(7053)/LINCR-0001(29200) BS_FEPRNEXX 1.84161680413546 NA NA 1.84161680413546 no change NA NA no change 8:10477898 8:10445365 ARRIBA other 2 0 low [],duplication LINCR-0001 NA AC104964.2 LINCR-0001 NA NA NA NA NA -LINCR-0001--AC104964.2(8027)/LINCR-0001(28226) BS_2SFTWNVE 1.72071759084296 NA NA 1.72071759084296 no change NA NA no change 8:10480192 8:10446339 ARRIBA other 3 0 low [],duplication LINCR-0001 NA AC104964.2 LINCR-0001 NA NA NA NA NA -LINCR-0001--AC104964.2(8027)/LINCR-0001(28226) BS_7BTZQKYY -0.165401493635771 NA NA -0.165401493635771 no change NA NA no change 8:10480192 8:10446339 ARRIBA other 3 0 medium [],duplication LINCR-0001 NA AC104964.2 LINCR-0001 NA NA NA NA NA -LINCR-0001--AC104964.2(8027)/LINCR-0001(28226) BS_N6NE6B3W 1.16378271521629 NA NA 1.16378271521629 no change NA NA no change 8:10480192 8:10446339 ARRIBA other 10 1 high [],duplication LINCR-0001 NA AC104964.2 LINCR-0001 NA NA NA NA NA -LINCR-0001--AC104964.2(8027)/LINCR-0001(28226) BS_PEP9NZXN 0.0101827665763918 NA NA 0.0101827665763918 no change NA NA no change 8:10480192 8:10446339 ARRIBA other 2 1 medium [],duplication LINCR-0001 NA AC104964.2 LINCR-0001 NA NA NA NA NA -LINCR-0001--AC104964.2(8027)/LINCR-0001(28226) BS_WRHDP7WF 0.103885674434602 NA NA 0.103885674434602 no change NA NA no change 8:10480192 8:10446339 ARRIBA other 3 1 high [],duplication LINCR-0001 NA AC104964.2 LINCR-0001 NA NA NA NA NA -LIPJ--RNLS BS_YE1MAQYJ 5.77107308048525 -1.00658386722554 NA NA differentially expressed no change NA NA 10:88594144 10:88365733 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:0.00Mb],LOCAL_INVERSION:+:-:[2223]],duplication/5'-5' LIPJ NA RNLS NA NA NA NA NA NA -LLPH--TMBIM4 BS_HCP5C912 -0.824483426497901 -0.430748626291257 NA NA no change no change NA NA 12:66123568 12:66153448 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_REARRANGEMENT:-:[5078]],duplication LLPH NA TMBIM4 NA NA NA NA NA NA -LLPH--TMBIM4 BS_SBFNFZ8B 0.263628095459355 0.114560707024796 NA NA no change no change NA NA 12:66123568 12:66153448 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_REARRANGEMENT:-:[5078]],duplication LLPH NA TMBIM4 NA NA NA NA NA NA -LMAN2--RPL19P20(20501)/RPSAP61(70867) BS_M026T44Q 3.00761559050098 7.85840070835465 NA NA differentially expressed differentially expressed NA NA 5:177334284 X:44670220 ARRIBA frameshift 5 0 high [],translocation LMAN2 NA RPL19P20 RPSAP61 NA NA NA NA NA -LMBRD2--AC113386.1 BS_B1C6GZ84 1.63214764304394 NA NA NA no change NA NA NA 5:36136309 5:31164165 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr5:4.83Mb]],deletion LMBRD2 NA AC113386.1 NA NA NA NA NA NA -LMCD1--RAD18 BS_GW0GKWMS 0.682586745260102 3.36869369921961 NA NA no change differentially expressed NA NA 3:8501980 3:8963593 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr3:0.20Mb]],inversion LMCD1 NA RAD18 NA NA NA NA NA NA -LMNA--AL590483.2(109776)/C1orf100(133848) BS_KE56MMY0 4.32643112409245 NA NA -1.26047264115945 differentially expressed NA NA no change 1:156083184 1:244218787 ARRIBA other 6 0 high [],inversion LMNA NA AL590483.2 C1orf100 CosmicCensus NA NA NA NA -LMNB2--AC020687.1 BS_AZN38B7V 0.213843428557283 NA NA NA no change NA NA NA 19:2456670 15:87501806 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr19--chr15]],translocation LMNB2 NA AC020687.1 NA NA NA NA NA NA -LMNTD1--LMNTD1 BS_0WVJYM9R 4.92855504459045 4.92855504459045 NA NA differentially expressed differentially expressed NA NA 12:25503738 12:25549546 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -LMNTD1--LMNTD1 BS_49BQS7Z6 7.55098217217178 7.55098217217178 NA NA differentially expressed differentially expressed NA NA 12:25503738 12:25549546 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -LMNTD1--LMNTD1 BS_7BTZQKYY 12.7626773375492 12.7626773375492 NA NA differentially expressed differentially expressed NA NA 12:25503738 12:25549546 ARRIBA frameshift 38 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -LMNTD1--LMNTD1 BS_8ZP3CBQA 5.50192560712276 5.50192560712276 NA NA differentially expressed differentially expressed NA NA 12:25503738 12:25549546 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -LMNTD1--LMNTD1 BS_B741RZY9 7.96119634712886 7.96119634712886 NA NA differentially expressed differentially expressed NA NA 12:25503738 12:25549546 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -LMNTD1--LMNTD1 BS_HZ707C55 5.72977509897454 5.72977509897454 NA NA differentially expressed differentially expressed NA NA 12:25503738 12:25549546 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -LMNTD1--LMNTD1 BS_QSTAVWGE 8.0851042894518 8.0851042894518 NA NA differentially expressed differentially expressed NA NA 12:25546374 12:25557369 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -LMNTD1--LMNTD1 BS_SFKZSJN1 5.36117149183392 5.36117149183392 NA NA differentially expressed differentially expressed NA NA 12:25503738 12:25549546 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -LMO2--LINC02546 BS_49FQXT2E 1.61593174667929 NA NA NA no change NA NA NA 11:33881824 11:29642820 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr11:4.23Mb]],deletion/5'-5' LMO2 NA LINC02546 NA CosmicCensus, Oncogene NA NA NA NA -LMO2--LINC02546(12156)/HNRNPRP2(26066) BS_49FQXT2E 1.61593174667929 NA NA 61.5839002327496 no change NA NA differentially expressed 11:33881824 11:29642820 ARRIBA other 5 0 medium [],deletion LMO2 NA LINC02546 HNRNPRP2 CosmicCensus, Oncogene NA NA NA NA -LMO2(62270)/CAPRIN1(97124)--NPSR1-AS1 BS_6JHXXVR7 -1.36133731752072 28.764114901434 4.57881938360767 NA no change differentially expressed differentially expressed NA 11:33954559 7:34569861 ARRIBA other 13 3 high [],translocation LMO2 CAPRIN1 NPSR1-AS1 NA CosmicCensus, Oncogene NA NA NA NA -LMO7--RNF219-AS1 BS_A3QZB9Y2 -0.0797194985908457 -1.050467715346 NA NA no change no change NA NA 13:75761038 13:78274253 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr13:2.06Mb]],deletion LMO7 NA RNF219-AS1 NA Oncogene NA NA NA NA -LMO7--RNF219-AS1 BS_A3QZB9Y2 -0.0797194985908457 -1.050467715346 NA NA no change no change NA NA 13:75761038 13:78605301 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr13:2.06Mb]],deletion LMO7 NA RNF219-AS1 NA Oncogene NA NA NA NA -LMO7--UCHL3 BS_8S86CM61 -0.465191983358566 -0.971512452676471 NA NA no change no change NA NA 13:75623320 13:75594915 ARRIBA frameshift 1 1 low [Klijn_CellLines,FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr13:0.01Mb],LOCAL_REARRANGEMENT:+:[14414]],duplication LMO7 NA UCHL3 NA Oncogene NA NA NA TCGAFusion -LMTK2--AC002454.1 BS_K17VQECG 1.02338315357926 -0.282425111435574 NA NA no change no change NA NA 7:98204186 7:92844897 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr7:5.19Mb]],inversion/3'-3' LMTK2 NA AC002454.1 NA Kinase NA NA NA NA -LMTK2--CDK6 BS_K17VQECG 1.02338315357926 8.48023401380702 NA NA no change differentially expressed NA NA 7:98204186 7:92833690 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr7:5.27Mb]],inversion LMTK2 NA CDK6 NA Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -LMTK2--SLC25A13 BS_HX0S30NE -0.00408993829710469 0.949756074933333 NA NA no change no change NA NA 7:98107280 7:96296951 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr7:1.78Mb]],inversion LMTK2 NA SLC25A13 NA Kinase NA NA NA NA -LNX1--AC068944.1(17087)/AC109349.1(52456) BS_H1ZS5FMZ 5.02667282786661 NA NA NA differentially expressed NA NA NA 4:53557874 4:29065852 ARRIBA frameshift 132 2 high [],deletion LNX1 NA AC068944.1 AC109349.1 NA NA NA NA NA -LNX1--AC109349.1 BS_H1ZS5FMZ 5.02667282786661 NA NA NA differentially expressed NA NA NA 4:53557874 4:29127154 ARRIBA frameshift 10 2 medium [INTRACHROMOSOMAL[chr4:24.26Mb]],deletion/5'-5' LNX1 NA AC109349.1 NA NA NA NA NA NA -LNX1--KIT BS_4QW2S1Q8 0.881135383992749 0.451536983976889 NA NA no change no change NA NA 4:53557874 4:54737652 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr4:0.96Mb]],duplication/5'-5' LNX1 NA KIT NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -LNX1--LNX1 BS_66HQ3E4Z 1.84706632223982 1.84706632223982 NA NA no change no change NA NA 4:53476753 4:53481854 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.24Mb]],duplication/non-canonical_splicing LNX1 NA LNX1 NA NA NA NA NA NA -LNX1--LNX1 BS_JKXA3FQC 1.23571010510398 1.23571010510398 NA NA no change no change NA NA 4:53476753 4:53481854 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.24Mb]],duplication/non-canonical_splicing LNX1 NA LNX1 NA NA NA NA NA NA -LNX1--LNX1 BS_VNE0ZPBS 1.5242030487224 1.5242030487224 NA NA no change no change NA NA 4:53476753 4:53481854 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.24Mb]],duplication/non-canonical_splicing LNX1 NA LNX1 NA NA NA NA NA NA -LOXL2--CTNNA1 BS_59ZJWJTF 12.479072815972 2.99703869534713 NA NA differentially expressed differentially expressed NA NA 8:23309667 5:138824675 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr8--chr5]],translocation LOXL2 NA CTNNA1 NA Oncogene Oncogene NA NA NA -LPA--QKI BS_1HQ76V6D 24.2849223355613 0.983216698209454 NA NA differentially expressed no change NA NA 6:160633753 6:163455279 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr6:2.75Mb]],inversion LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA -LPA--QKI BS_1HQ76V6D 24.2849223355613 0.983216698209454 NA NA differentially expressed no change NA NA 6:160635123 6:163455279 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr6:2.75Mb]],inversion LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA -LPA--QKI BS_1HQ76V6D 24.2849223355613 0.983216698209454 NA NA differentially expressed no change NA NA 6:160622663 6:163455279 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr6:2.75Mb]],inversion LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA -LPP--IGSF10 BS_1XJ73KBQ 10.0115116127008 4.13420070816897 NA NA differentially expressed differentially expressed NA NA 3:188154021 3:151443884 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:36.69Mb]],inversion LPP NA IGSF10 NA CosmicCensus, Oncogene NA NA NA NA -LPP--IGSF10 BS_1XJ73KBQ 10.0115116127008 4.13420070816897 NA NA differentially expressed differentially expressed NA NA 3:188154252 3:151443884 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:36.69Mb]],inversion LPP NA IGSF10 NA CosmicCensus, Oncogene NA NA NA NA -LPP--OXR1 BS_1XJ73KBQ 10.0115116127008 -0.358763637612953 NA NA differentially expressed no change NA NA 3:188708393 8:106359476 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr3--chr8]],translocation LPP NA OXR1 NA CosmicCensus, Oncogene NA NA NA NA -LRCH1--AMD1 BS_ZR96A4FH -0.116778910100221 -1.02232254367884 NA NA no change no change NA NA 13:46553702 6:110875119 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr13--chr6]],translocation LRCH1 NA AMD1 NA NA NA NA NA NA -LRCH3--FANCD2 BS_FAQQ0GCQ 0.983358521688459 0.834761546674823 NA NA no change no change NA NA 3:197791540 3:10039279 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr3:187.69Mb]],duplication LRCH3 NA FANCD2 NA NA CosmicCensus, Oncogene NA NA NA -LRCH3--FANCD2 BS_FAQQ0GCQ 0.983358521688459 0.834761546674823 NA NA no change no change NA NA 3:197791540 3:10039721 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:187.69Mb]],duplication LRCH3 NA FANCD2 NA NA CosmicCensus, Oncogene NA NA NA -LRGUK--LRGUK BS_7BTZQKYY 19.9090189716203 19.9090189716203 NA NA differentially expressed differentially expressed NA NA 7:134221918 7:134148238 ARRIBA in-frame 15 5 low [SELFIE,INTRACHROMOSOMAL[chr7:0.14Mb]],duplication/non-canonical_splicing LRGUK NA LRGUK NA Oncogene Oncogene NA NA NA -LRGUK--LRGUK BS_QSTAVWGE 13.3492980371435 13.3492980371435 NA NA differentially expressed differentially expressed NA NA 7:134258405 7:134221779 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.14Mb]],duplication/non-canonical_splicing LRGUK NA LRGUK NA Oncogene Oncogene NA NA NA -LRIG1--FYTTD1 BS_FAQQ0GCQ 0.364506044116744 2.12781049886511 NA NA no change differentially expressed NA NA 3:66500190 3:197773403 ARRIBA in-frame 4 3 high [INTRACHROMOSOMAL[chr3:131.24Mb]],inversion LRIG1 NA FYTTD1 NA TumorSuppressorGene, Oncogene NA NA NA NA -LRIG1--KMT2C BS_K17VQECG 1.10179459990997 2.43693622648328 NA NA no change differentially expressed NA NA 3:66451559 7:152273867 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr3--chr7]],translocation LRIG1 NA KMT2C NA TumorSuppressorGene, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -LRIG3--SOX5 BS_SD8YBRBR 13.833916679484 10.764819814996 NA NA differentially expressed differentially expressed NA NA 12:58890665 12:23896024 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr12:34.92Mb]],deletion LRIG3 NA SOX5 NA TumorSuppressorGene, CosmicCensus Oncogene, TranscriptionFactor NA NA NA -LRMDA--VTI1A BS_C3P5BC92 NA 2.95067020054632 NA NA NA differentially expressed NA NA 10:75438494 10:112668218 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:35.89Mb]],deletion LRMDA NA VTI1A NA NA CosmicCensus, Oncogene NA NA NA -LRMP--AC069208.1 BS_A0DYVX9J -0.540915963235278 NA NA NA no change NA NA NA 12:25015261 12:24297404 ARRIBA frameshift 4 2 high [INTRACHROMOSOMAL[chr12:0.44Mb]],duplication/5'-5' LRMP NA AC069208.1 NA TumorSuppressorGene, Oncogene NA NA NA NA -LRP4--RTN3 BS_3W07B2TG -0.144257648979 -0.764653713325368 NA NA no change no change NA NA 11:46867979 11:63736359 ARRIBA frameshift 24 6 high [INTRACHROMOSOMAL[chr11:16.76Mb]],duplication/5'-5' LRP4 NA RTN3 NA NA NA NA NA NA -LRRC20--ZNF37BP BS_84XCR9GG -0.375800542082798 -0.0108273618723652 NA NA no change no change NA NA 10:70344116 10:42514720 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr10:27.75Mb]],deletion LRRC20 NA ZNF37BP NA NA NA NA NA NA -LRRC37A--KANSL1 BS_NZ71XCG3 4.03282847310751 3.48996078576783 NA NA differentially expressed differentially expressed NA NA 17:46306309 17:46152969 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:0.07Mb],LOCAL_INVERSION:+:-:[67344]],inversion LRRC37A NA KANSL1 NA NA NA NA NA NA -LRRC49--LRRC49 BS_DY9NTFQR 0.251982793601181 0.251982793601181 NA NA no change no change NA NA 15:70936822 15:70900922 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.20Mb]],duplication/non-canonical_splicing LRRC49 NA LRRC49 NA NA NA NA NA NA -LRRC49--LRRC49 BS_FCAKKZ20 -0.00664847622452732 -0.00664847622452732 NA NA no change no change NA NA 15:70984257 15:70900922 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.20Mb]],duplication/non-canonical_splicing LRRC49 NA LRRC49 NA NA NA NA NA NA -LRRC59--CNTNAP2 BS_RCCN63K6 3.0292989324592 -0.472440854064417 NA NA differentially expressed no change NA NA 17:50385118 7:148144023 ARRIBA frameshift 45 0 high [INTERCHROMOSOMAL[chr17--chr7]],translocation/5'-5' LRRC59 NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA -LRRC7--LRRC7 BS_0X9EGHY2 1.03776845306107 1.03776845306107 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_1T19NFJ8 1.06353757505996 1.06353757505996 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 15 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_398KYV92 0.886963094309702 0.886963094309702 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 18 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_4GTESTSE -0.149518480485344 -0.149518480485344 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_680K119G 0.906092891121004 0.906092891121004 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_7XRN3CFX 0.326451229103174 0.326451229103174 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_8MA5B8Y9 0.804103731893093 0.804103731893093 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_92VDQ0NE 1.29445761166867 1.29445761166867 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 18 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_BKR4E30C -0.619345684474949 -0.619345684474949 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_CZ82ANWP 0.465701983069247 0.465701983069247 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_DFGS950G 0.596486238498389 0.596486238498389 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_ERJAJ0KA -0.152795952405859 -0.152795952405859 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_FJZPQZ2C 0.00524767006341771 0.00524767006341771 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_FW5ECXXK 1.01294846020366 1.01294846020366 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_HCP5C912 1.18991721771464 1.18991721771464 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 35 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_M1PVEHCM 1.38496064858319 1.38496064858319 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 13 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_MF47B9ZW 1.44766134164355 1.44766134164355 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_PGHK1JRW -0.17100922377714 -0.17100922377714 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_QC3XCE6X 0.702594467606047 0.702594467606047 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_VNE0ZPBS 1.43242656476451 1.43242656476451 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 16 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_VPMKHW9X 1.59528139770283 1.59528139770283 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 13 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_W18SF91A -0.245437678329813 -0.245437678329813 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_WCRKYV0T 1.2499032081113 1.2499032081113 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 15 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC7--LRRC7 BS_WRQHPSXQ -1.12634265175911 -1.12634265175911 NA NA no change no change NA NA 1:70107826 1:70053026 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA -LRRC8A--DENND1A BS_DBDXCXT5 0.493140630911682 0.584506360677543 NA NA no change no change NA NA 9:128886121 9:123792630 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr9:4.95Mb]],inversion LRRC8A NA DENND1A NA NA NA NA NA NA -LRRC8A--DENND1A BS_EJ9JKM1C -0.412586572520839 0.691264920917666 NA NA no change no change NA NA 9:128886121 9:123792630 ARRIBA other 12 1 high [INTRACHROMOSOMAL[chr9:4.95Mb]],inversion LRRC8A NA DENND1A NA NA NA NA NA NA -LRRC8A--DENND1A BS_GFM6EA61 -1.00866627547601 -0.0627670024673717 NA NA no change no change NA NA 9:128886121 9:123792630 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr9:4.95Mb]],inversion LRRC8A NA DENND1A NA NA NA NA NA NA -LRRC8A--DENND1A BS_YB07VF1X -0.399311524555764 0.328106568521772 NA NA no change no change NA NA 9:128886121 9:123792630 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr9:4.95Mb]],inversion LRRC8A NA DENND1A NA NA NA NA NA NA -LRRC9--LRRC9 BS_0BXY0F9N 9.58885076448214 9.58885076448214 NA NA differentially expressed differentially expressed NA NA 14:60008214 14:59981848 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_53M8PP88 11.1104254167348 11.1104254167348 NA NA differentially expressed differentially expressed NA NA 14:60019260 14:59997656 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_67Z63A2K 12.8929275763956 12.8929275763956 NA NA differentially expressed differentially expressed NA NA 14:60019260 14:59997656 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_7BTZQKYY 14.5473604873224 14.5473604873224 NA NA differentially expressed differentially expressed NA NA 14:60019260 14:59997656 ARRIBA frameshift 18 3 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_7G42J2SK 9.63474339376766 9.63474339376766 NA NA differentially expressed differentially expressed NA NA 14:60019260 14:59959818 ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_AGS1HHGF 8.9227201835762 8.9227201835762 NA NA differentially expressed differentially expressed NA NA 14:60019260 14:59997656 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_FAVRBEW7 15.2627048058717 15.2627048058717 NA NA differentially expressed differentially expressed NA NA 14:60019260 14:59997656 ARRIBA frameshift 45 3 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_G63HYD6N 7.40670222041701 7.40670222041701 NA NA differentially expressed differentially expressed NA NA 14:60019260 14:59997656 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_GMDQK06Q 7.26000893541122 7.26000893541122 NA NA differentially expressed differentially expressed NA NA 14:60008214 14:59981848 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_JX449BF5 16.2884839054911 16.2884839054911 NA NA differentially expressed differentially expressed NA NA 14:60019260 14:59997656 ARRIBA frameshift 20 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_KK5C8VCK 9.83605924956495 9.83605924956495 NA NA differentially expressed differentially expressed NA NA 14:60019260 14:59997656 ARRIBA frameshift 21 5 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_M1T1K5WV 15.4954979377234 15.4954979377234 NA NA differentially expressed differentially expressed NA NA 14:60008214 14:59981848 ARRIBA in-frame 15 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_NGHK9RZP 11.840721499555 11.840721499555 NA NA differentially expressed differentially expressed NA NA 14:59999226 14:59959818 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_PKK3BZRG 14.1243967552316 14.1243967552316 NA NA differentially expressed differentially expressed NA NA 14:60019260 14:59997656 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_SAA624A4 5.2619114616181 5.2619114616181 NA NA differentially expressed differentially expressed NA NA 14:59967213 14:59959818 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_TNRHHYNC 9.77542623808596 9.77542623808596 NA NA differentially expressed differentially expressed NA NA 14:60019260 14:59997656 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_W4HGV6E7 12.7926199678332 12.7926199678332 NA NA differentially expressed differentially expressed NA NA 14:60019260 14:59997656 ARRIBA frameshift 13 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_WE3Q8A73 14.6765000433668 14.6765000433668 NA NA differentially expressed differentially expressed NA NA 14:60019260 14:59997656 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_YE1MAQYJ 12.4818185974064 12.4818185974064 NA NA differentially expressed differentially expressed NA NA 14:60019260 14:59997656 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRC9--LRRC9 BS_ZN8136D9 12.756717001492 12.756717001492 NA NA differentially expressed differentially expressed NA NA 14:60019260 14:59997656 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA -LRRFIP1--ARID1B BS_2EMW8ZG3 0.821296772736822 2.6468471584504 NA NA no change differentially expressed NA NA 2:237627740 6:157148624 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr2--chr6]],translocation LRRFIP1 NA ARID1B NA Oncogene CosmicCensus, Oncogene NA NA NA -LRRFIP1--MYT1L BS_H4B5Y6S0 -0.382197954661408 1.89002085221661 NA NA no change no change NA NA 2:237708630 2:2284503 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr2:235.30Mb]],inversion LRRFIP1 NA MYT1L NA Oncogene TranscriptionFactor NA NA NA -LRRIQ1--LRRIQ1 BS_4FZS7TX4 4.48533774765168 4.48533774765168 NA NA differentially expressed differentially expressed NA NA 12:85137969 12:85098355 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.23Mb]],duplication/non-canonical_splicing LRRIQ1 NA LRRIQ1 NA NA NA NA NA NA -LRRIQ1--LRRIQ1 BS_G63HYD6N 1.51640808712284 1.51640808712284 NA NA no change no change NA NA 12:85047470 12:85040490 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.23Mb]],duplication/non-canonical_splicing LRRIQ1 NA LRRIQ1 NA NA NA NA NA NA -LRRIQ1--LRRIQ1 BS_NRPG5K4K 2.06764728501516 2.06764728501516 NA NA differentially expressed differentially expressed NA NA 12:85244909 12:85152280 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.23Mb]],duplication/non-canonical_splicing LRRIQ1 NA LRRIQ1 NA NA NA NA NA NA -LRRIQ1--LRRIQ1 BS_T4P3J13C 3.57317895870279 3.57317895870279 NA NA differentially expressed differentially expressed NA NA 12:85244909 12:85152280 ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.23Mb]],duplication/non-canonical_splicing LRRIQ1 NA LRRIQ1 NA NA NA NA NA NA -LRRK2--LRRK2 BS_ZH1FBX50 -0.110347214199108 -0.110347214199108 NA NA no change no change NA NA 12:40340454 12:40313972 ARRIBA frameshift 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing LRRK2 NA LRRK2 NA Kinase, Kinase Kinase, Kinase NA NA NA -LRRK2--RNU6-699P(468245)/AC104806.2(51689) BS_B1C6GZ84 5.43688689978565 NA NA NA differentially expressed NA NA NA 12:40315798 4:67365616 ARRIBA other 2 1 medium [],translocation LRRK2 NA RNU6-699P AC104806.2 Kinase, Kinase NA NA NA NA -LRRTM4--LRRTM4 BS_9M5XJ10G 2.47845396476232 2.47845396476232 NA NA differentially expressed differentially expressed NA NA 2:77518318 2:77522069 ARRIBA frameshift 25 1 high [SELFIE,INTRACHROMOSOMAL[chr2:0.85Mb]],duplication LRRTM4 NA LRRTM4 NA NA NA NA NA NA -LRRTM4--LRRTM4 BS_A7MC2KR2 0.985988205512974 0.985988205512974 NA NA no change no change NA NA 2:77518318 2:77522069 ARRIBA frameshift 2 1 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.85Mb]],duplication LRRTM4 NA LRRTM4 NA NA NA NA NA NA -LRRTM4--LRRTM4 BS_DY9NTFQR 2.16572624191355 2.16572624191355 NA NA differentially expressed differentially expressed NA NA 2:77518318 2:77522069 ARRIBA frameshift 16 1 high [SELFIE,INTRACHROMOSOMAL[chr2:0.85Mb]],duplication LRRTM4 NA LRRTM4 NA NA NA NA NA NA -LRRTM4--LRRTM4 BS_GCQFGDTX 0.647187237184704 0.647187237184704 NA NA no change no change NA NA 2:77518318 2:77522069 ARRIBA frameshift 7 1 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.85Mb]],duplication LRRTM4 NA LRRTM4 NA NA NA NA NA NA -LRRTM4--LRRTM4 BS_M86ECPHK 0.77627043095347 0.77627043095347 NA NA no change no change NA NA 2:77518318 2:77522069 ARRIBA frameshift 9 4 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.85Mb]],duplication LRRTM4 NA LRRTM4 NA NA NA NA NA NA -LRRTM4--LRRTM4 BS_NS7GSHB9 3.10070047886862 3.10070047886862 NA NA differentially expressed differentially expressed NA NA 2:77518318 2:77522069 ARRIBA frameshift 19 4 high [SELFIE,INTRACHROMOSOMAL[chr2:0.85Mb]],duplication LRRTM4 NA LRRTM4 NA NA NA NA NA NA -LRRTM4--LRRTM4 BS_P39SQPTS 3.30227440923603 3.30227440923603 NA NA differentially expressed differentially expressed NA NA 2:77518318 2:77522069 ARRIBA frameshift 10 3 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.85Mb]],duplication LRRTM4 NA LRRTM4 NA NA NA NA NA NA -LRRTM4--LRRTM4 BS_WSQMAA33 1.26256168921511 1.26256168921511 NA NA no change no change NA NA 2:77518318 2:77519864 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.85Mb]],duplication/non-canonical_splicing LRRTM4 NA LRRTM4 NA NA NA NA NA NA -LSM11--RNU6-120P(59622)/EXOGP1(2375) BS_1D6PZNKN 0.432459943210619 NA NA 5.38646776928005 no change NA NA differentially expressed 5:157744198 18:21180128 ARRIBA frameshift 7 1 high [],translocation LSM11 NA RNU6-120P EXOGP1 NA NA NA NA NA -LSM14B--CDH4 BS_B61168DE -0.911627309671382 -1.64209128545427 NA NA no change no change NA NA 20:62123613 20:61556850 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr20:0.18Mb]],duplication LSM14B NA CDH4 NA NA TumorSuppressorGene NA NA NA -LSS--MAPK8IP3 BS_QYPHA40N 1.24199491288027 0.814773290803016 NA NA no change no change NA NA 21:46221852 16:1768476 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr21--chr16]],translocation LSS NA MAPK8IP3 NA NA NA NA NA NA -LTBP1--AC008278.1 BS_AHEFXG7W 6.08519979800709 NA NA NA differentially expressed NA NA NA 2:33187080 2:15673403 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr2:17.27Mb]],duplication/5'-5' LTBP1 NA AC008278.1 NA NA NA NA NA NA -LTBP1--DDX1(9924)/AC008278.1(27649) BS_AHEFXG7W 6.08519979800709 -0.190386631315136 NA NA differentially expressed no change NA NA 2:33187080 2:15641035 ARRIBA frameshift 53 1 high [],duplication LTBP1 NA DDX1 AC008278.1 NA Oncogene NA NA NA -LTBP1--LINC01804 BS_AHEFXG7W 6.08519979800709 NA NA NA differentially expressed NA NA NA 2:33187080 2:15701229 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr2:17.20Mb]],duplication LTBP1 NA LINC01804 NA NA NA NA NA NA -LTBP1--LINC01804 BS_AHEFXG7W 6.08519979800709 NA NA NA differentially expressed NA NA NA 2:33187080 2:15700390 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr2:17.20Mb]],duplication LTBP1 NA LINC01804 NA NA NA NA NA NA -LTBP2--AL110292.1(60382)/AL390334.1(37915) BS_ZVZDDW2G 11.7132773869946 NA NA NA differentially expressed NA NA NA 14:74585854 14:27220802 ARRIBA frameshift 4 0 medium [],deletion LTBP2 NA AL110292.1 AL390334.1 NA NA NA NA NA -LTBP3--AC090559.1 BS_N5DVEJXT 3.97695252545668 NA NA NA differentially expressed NA NA NA 11:65553447 11:47401142 ARRIBA frameshift 14 11 medium [INTRACHROMOSOMAL[chr11:18.13Mb]],inversion/5'-5' LTBP3 NA AC090559.1 NA Oncogene NA NA NA NA -LTBP3--AP000769.1(12490)/AP000769.3(8031) BS_KBT7MQ6H 2.98481124175287 NA NA NA differentially expressed NA NA NA 11:65543105 11:65479210 ARRIBA frameshift 9 3 high [],inversion LTBP3 NA AP000769.1 AP000769.3 Oncogene NA NA NA NA -LTBP3--AP000769.3(8370)/MALAT1(1256) BS_KBT7MQ6H 2.98481124175287 NA NA 3.89391742992976 differentially expressed NA NA differentially expressed 11:65543105 11:65496506 ARRIBA frameshift 4 0 medium [],inversion LTBP3 NA AP000769.3 MALAT1 Oncogene NA NA CosmicCensus, Oncogene NA -LUZP2--LUZP2 BS_42DY6WS7 3.92618348943784 3.92618348943784 NA NA differentially expressed differentially expressed NA NA 11:25055087 11:25061990 ARRIBA frameshift 4 1 medium [SELFIE,INTRACHROMOSOMAL[chr11:0.59Mb]],inversion/3'-3' LUZP2 NA LUZP2 NA NA NA NA NA NA -LUZP2--LUZP2 BS_GYA4V1RD 4.07425590337774 4.07425590337774 NA NA differentially expressed differentially expressed NA NA 11:25055087 11:25061990 ARRIBA frameshift 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr11:0.59Mb]],inversion/3'-3' LUZP2 NA LUZP2 NA NA NA NA NA NA -LUZP2--SLC1A2 BS_VVTHDRBD 3.52080244791626 0.877237977213461 NA NA differentially expressed no change NA NA 11:24983293 11:35306242 ARRIBA in-frame 24 1 high [INTRACHROMOSOMAL[chr11:10.17Mb]],inversion LUZP2 NA SLC1A2 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_1T19NFJ8 1.00524511580348 1.00524511580348 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 13 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_273HKCT4 0.269703920592164 0.269703920592164 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_2AR3AP0N 0.705449772259063 0.705449772259063 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_2XD3MNKD 0.511385452961706 0.511385452961706 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_39CGACC7 0.161418206524869 0.161418206524869 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_4W1DBAN4 1.37375885874047 1.37375885874047 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_6MY8W3H0 2.07901992483812 2.07901992483812 NA NA differentially expressed differentially expressed NA NA 6:6366355 6:6438732 ARRIBA other 21 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_7XRN3CFX 0.529155787930682 0.529155787930682 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_912NX4Y0 1.16201499511748 1.16201499511748 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 6 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_92VDQ0NE 0.811432423839223 0.811432423839223 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 2 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_AJ6X83G5 2.40288215398152 2.40288215398152 NA NA differentially expressed differentially expressed NA NA 6:6366355 6:6438732 ARRIBA other 9 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_AMQGM1V9 1.27486646320015 1.27486646320015 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_AWH9757B 0.658755337409892 0.658755337409892 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_C7N3J4NW 1.72466445348386 1.72466445348386 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_CREQ97QC 1.13007359429936 1.13007359429936 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 8 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_CVGFNCBJ 1.13813757730042 1.13813757730042 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 3 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_HCP5C912 0.981112202914465 0.981112202914465 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 13 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_JXNZYGCR 0.622524672706606 0.622524672706606 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_K5802F84 1.08614296498832 1.08614296498832 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 9 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_KPT2WPHW 0.832257172194816 0.832257172194816 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_M4NVX721 0.772306579634275 0.772306579634275 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 7 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_NT9NZYFD 0.731886114214317 0.731886114214317 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 9 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_NVKGSMXS 1.57307942170631 1.57307942170631 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_QF5VVZX5 1.77021872120499 1.77021872120499 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_SBFNFZ8B 1.76862069744672 1.76862069744672 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_TG93XC55 2.04633905255341 2.04633905255341 NA NA differentially expressed differentially expressed NA NA 6:6366355 6:6438732 ARRIBA other 8 6 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_VMMJYN8Z 1.54843629468899 1.54843629468899 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 8 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_VNE0ZPBS 1.51544189410073 1.51544189410073 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 5 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_VPMKHW9X 2.0814979966594 2.0814979966594 NA NA differentially expressed differentially expressed NA NA 6:6366355 6:6438732 ARRIBA other 12 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_VTJ9ESSV 0.520302930430968 0.520302930430968 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 4 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_WCRKYV0T 2.01668182127927 2.01668182127927 NA NA differentially expressed differentially expressed NA NA 6:6366355 6:6438732 ARRIBA other 10 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_YMAJC22S 1.24822798686013 1.24822798686013 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 6 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LY86-AS1--LY86-AS1 BS_ZR96A4FH 1.52132956327443 1.52132956327443 NA NA no change no change NA NA 6:6366355 6:6438732 ARRIBA other 10 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA -LYPD6(12197)/MMADHC(83289)--LYPD6 BS_1HQ76V6D 0.663050808408366 0.663050808408366 1.2745833567851 NA no change no change no change NA 2:149486345 2:149449049 ARRIBA other 1 2 high [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA -LYPD6(12197)/MMADHC(83289)--LYPD6 BS_1QXEC43H 1.71817020418046 1.71817020418046 -0.582605619309195 NA no change no change no change NA 2:149486345 2:149449049 ARRIBA other 3 0 medium [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA -LYPD6(12197)/MMADHC(83289)--LYPD6 BS_2A162JH9 4.15410594675156 4.15410594675156 0.826261139520355 NA differentially expressed differentially expressed no change NA 2:149486345 2:149449049 ARRIBA other 5 2 high [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA -LYPD6(12197)/MMADHC(83289)--LYPD6 BS_4SCWT0FX 2.47616231396827 2.47616231396827 1.07605255635035 NA differentially expressed differentially expressed no change NA 2:149486345 2:149449049 ARRIBA other 2 2 high [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA -LYPD6(12197)/MMADHC(83289)--LYPD6 BS_CB6VK7PB -0.971657754176407 -0.971657754176407 0.043858246643098 NA no change no change no change NA 2:149486345 2:149449049 ARRIBA other 2 1 high [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA -LYPD6(12197)/MMADHC(83289)--LYPD6 BS_QAG1RDXN 3.60461962579742 3.60461962579742 -0.277193874559581 NA differentially expressed differentially expressed no change NA 2:149486345 2:149437638 ARRIBA other 4 0 medium [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA -LYPD6(12197)/MMADHC(83289)--LYPD6 BS_R6WNEEE4 1.45133486259954 1.45133486259954 0.3274094433284 NA no change no change no change NA 2:149486345 2:149449049 ARRIBA other 2 1 high [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA -LYPD6(12197)/MMADHC(83289)--LYPD6 BS_RD4D5F9F 0.932559602357886 0.932559602357886 1.22724688206121 NA no change no change no change NA 2:149486345 2:149449049 ARRIBA other 4 0 high [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA -LYPD6(12197)/MMADHC(83289)--LYPD6 BS_S0175QKX 1.37878591266163 1.37878591266163 -0.15037358800765 NA no change no change no change NA 2:149486345 2:149449049 ARRIBA other 3 0 high [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA -LYPD6(12197)/MMADHC(83289)--LYPD6 BS_VJ2S5DVS 3.91274560084992 3.91274560084992 0.69499917458146 NA differentially expressed differentially expressed no change NA 2:149486345 2:149449049 ARRIBA other 2 2 medium [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA -LYPLA1--AC113145.1(1801)/AC023762.1(84118) BS_HZRM07TW 1.02172256976434 NA NA NA no change NA NA NA 8:54100908 8:49822745 ARRIBA frameshift 4 0 high [],inversion LYPLA1 NA AC113145.1 AC023762.1 NA NA NA NA NA -LYPLA1--PSAT1P1(71054)/AC113145.1(5211) BS_HZRM07TW 1.02172256976434 -0.283491297012221 NA NA no change no change NA NA 8:54100908 8:49812375 ARRIBA frameshift 17 1 high [],inversion LYPLA1 NA PSAT1P1 AC113145.1 NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_3MS8WVNR 0.813818007859962 0.813818007859962 NA NA no change no change NA NA 1:219218712 1:219211492 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_84XCR9GG 1.45408095801186 1.45408095801186 NA NA no change no change NA NA 1:219218712 1:219210532 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_9M5XJ10G 0.999550419354399 0.999550419354399 NA NA no change no change NA NA 1:219218712 1:219210532 ARRIBA other 2 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_BHR08WGW -0.407495270906866 -0.407495270906866 NA NA no change no change NA NA 1:219218712 1:219210532 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_EFE4YEK3 0.0807331523895104 0.0807331523895104 NA NA no change no change NA NA 1:219218712 1:219210532 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_ERWT0ZWE 0.678471276667762 0.678471276667762 NA NA no change no change NA NA 1:219218712 1:219210532 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_GC3CH9TY 0.203781664353719 0.203781664353719 NA NA no change no change NA NA 1:219218712 1:219210532 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_M86ECPHK 1.15912447007875 1.15912447007875 NA NA no change no change NA NA 1:219218712 1:219210532 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_MKM0EEN1 2.56230003472876 2.56230003472876 NA NA differentially expressed differentially expressed NA NA 1:219218712 1:219210532 ARRIBA other 2 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_NKRYMHEP 0.890504269924926 0.890504269924926 NA NA no change no change NA NA 1:219218712 1:219210532 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_QPPPGYP4 1.33866753618702 1.33866753618702 NA NA no change no change NA NA 1:219218712 1:219210532 ARRIBA other 5 1 medium [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_T1DVKKJB -1.08854677787976 -1.08854677787976 NA NA no change no change NA NA 1:219218712 1:219210532 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_TZ5D0A7R 0.272191320502723 0.272191320502723 NA NA no change no change NA NA 1:219218712 1:219210515 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_V3Z3DB4N 1.3373673460675 1.3373673460675 NA NA no change no change NA NA 1:219218712 1:219210532 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_W4HGV6E7 0.169885019904543 0.169885019904543 NA NA no change no change NA NA 1:219218712 1:219210532 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_W9AT0MR7 0.927931956120922 0.927931956120922 NA NA no change no change NA NA 1:219218712 1:219210532 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_Y8D1F5WW -0.0257924610773826 -0.0257924610773826 NA NA no change no change NA NA 1:219218712 1:219210532 ARRIBA other 2 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_ZV68CES9 1.24722885978767 1.24722885978767 NA NA no change no change NA NA 1:219218712 1:219210532 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA -LYRM1--RBFOX1 BS_6JHXXVR7 -2.37366092325516 -2.61058023234123 NA NA differentially expressed differentially expressed NA NA 16:20920214 16:6323458 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr16:13.19Mb]],inversion/3'-3' LYRM1 NA RBFOX1 NA NA NA NA NA NA -LYST--MTCYBP14(9110)/MTND6P14(7725) BS_W644VEVE 2.60021325514557 NA NA 133.941320835173 differentially expressed NA NA differentially expressed 1:235746336 1:235529795 ARRIBA frameshift 8 1 high [],inversion LYST NA MTCYBP14 MTND6P14 NA NA NA NA NA -MACF1--SLC6A18 BS_JR5ATB7G 1.249614825001 113.974930121708 NA NA no change differentially expressed NA NA 1:39231243 5:1243555 ARRIBA in-frame 72 6 high [INTERCHROMOSOMAL[chr1--chr5]],translocation MACF1 NA SLC6A18 NA Oncogene NA NA NA NA -MACF1--SLC6A18 BS_JR5ATB7G 1.249614825001 113.974930121708 NA NA no change differentially expressed NA NA 1:39231243 5:1245848 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr1--chr5]],translocation MACF1 NA SLC6A18 NA Oncogene NA NA NA NA -MACF1--TTYH1 BS_S5P8VTN5 1.19768331723293 -0.452331457044392 NA NA no change no change NA NA 1:39455097 19:54435828 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr1--chr19]],translocation MACF1 NA TTYH1 NA Oncogene Oncogene NA NA NA -MAD1L1--MAD1L1 BS_13CGKADW -1.64347859257365 -1.64347859257365 NA NA no change no change NA NA 7:1898200 7:2149238 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.42Mb]],duplication/non-canonical_splicing MAD1L1 NA MAD1L1 NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA -MAGED1--SHISA9 BS_1021ZGQT 2.1603933651434 4.15120548261937 NA NA differentially expressed differentially expressed NA NA X:51894349 16:12916688 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chrX--chr16]],translocation MAGED1 NA SHISA9 NA NA NA NA NA NA -MAGI1--SYAP1 BS_QXKRN6CR -0.218920873879496 5.46051538520807 NA NA no change differentially expressed NA NA 3:65478592 X:16735227 ARRIBA in-frame 16 4 high [INTERCHROMOSOMAL[chr3--chrX]],translocation MAGI1 NA SYAP1 NA NA NA NA NA NA -MAGI2--GNAT3 BS_W36RZSFA -1.7788977323049 234.457991038408 NA NA no change differentially expressed NA NA 7:79453020 7:80494647 ARRIBA in-frame 9 0 high [INTRACHROMOSOMAL[chr7:1.01Mb]],duplication MAGI2 NA GNAT3 NA NA NA NA NA NA -MAGI2--GNAT3 BS_W36RZSFA -1.7788977323049 234.457991038408 NA NA no change differentially expressed NA NA 7:79453020 7:80478998 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:1.01Mb]],duplication MAGI2 NA GNAT3 NA NA NA NA NA NA -MAGI2--MAGI2-AS3(45754)/NUP35P2(26949) BS_90B22NGP 3.19341718768465 1.11801543212086 NA NA differentially expressed no change NA NA 7:79453020 7:79516962 ARRIBA frameshift 3 0 medium [],duplication MAGI2 NA MAGI2-AS3 NUP35P2 NA NA NA NA NA -MALAT1--DST BS_J8VX4D17 1.68507247309645 0.318009543801848 NA NA no change no change NA NA 11:65499357 6:56896144 ARRIBA other 6 0 low [INTERCHROMOSOMAL[chr11--chr6]],translocation MALAT1 NA DST NA CosmicCensus, Oncogene Oncogene NA NA NA -MAMDC2-AS1--SMC5-AS1 BS_1AYRM596 1.15847766014327 7.33686937599698 NA NA no change differentially expressed NA NA 9:70154148 9:70218485 ARRIBA other 2 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr9:0.02Mb],LOCAL_REARRANGEMENT:-:[18109]],duplication MAMDC2-AS1 NA SMC5-AS1 NA NA NA NA NA NA -MAMDC2-AS1--SMC5-AS1 BS_6T4JGBGY 7.26743645878983 12.2019869241005 NA NA differentially expressed differentially expressed NA NA 9:70154148 9:70218485 ARRIBA other 2 1 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr9:0.02Mb],LOCAL_REARRANGEMENT:-:[18109]],duplication MAMDC2-AS1 NA SMC5-AS1 NA NA NA NA NA NA -MAML2--AP000787.1(30659)/AP001790.1(217643) BS_WYERXS4G 5.64671751725929 8.09616618568454 NA NA differentially expressed differentially expressed NA NA 11:95978441 11:95264763 ARRIBA other 4 1 medium [],inversion MAML2 NA AP000787.1 AP001790.1 CosmicCensus, Oncogene NA NA NA NA -MAML2--NHSL2 BS_WYERXS4G 5.64671751725929 -0.269153971079075 NA NA differentially expressed no change NA NA 11:96341383 X:72100189 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr11--chrX]],translocation/5'-5' MAML2 NA NHSL2 NA CosmicCensus, Oncogene NA NA NA NA -MAML2--YAP1 BS_1J2WQ08M 4.94291467230944 3.13331937181179 NA NA differentially expressed differentially expressed NA NA 11:96341383 11:102114144 ARRIBA in-frame 26 1 high [CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion -MAML2--YAP1 BS_3DCBDJAT 4.76987446671968 3.21413289676854 NA NA differentially expressed differentially expressed NA NA 11:96091892 11:102186018 ARRIBA frameshift 4 0 high [CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion -MAML2--YAP1 BS_3DCBDJAT 4.76987446671968 3.21413289676854 NA NA differentially expressed differentially expressed NA NA 11:96091892 11:102205893 ARRIBA frameshift 4 0 medium [CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion -MAML2--YAP1 BS_3DCBDJAT 4.76987446671968 3.21413289676854 NA NA differentially expressed differentially expressed NA NA 11:96091892 11:102114144 ARRIBA in-frame 1 0 low [CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion -MAML2--YAP1 BS_QP6MSKRE 5.16311107103836 3.5565149138431 NA NA differentially expressed differentially expressed NA NA 11:96341383 11:102114144 ARRIBA in-frame 59 6 high [CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion -MAMLD1--MAMLD1 BS_0WVJYM9R -0.943529627235255 -0.943529627235255 NA NA no change no change NA NA X:150473802 X:150469745 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA -MAMLD1--MAMLD1 BS_1D6PZNKN 1.86637779128669 1.86637779128669 NA NA no change no change NA NA X:150471490 X:150462772 ARRIBA in-frame 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA -MAMLD1--MAMLD1 BS_24AHZ9ZW 1.0265932870826 1.0265932870826 NA NA no change no change NA NA X:150471490 X:150469745 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA -MAMLD1--MAMLD1 BS_2ADZNNV4 0.407974349332096 0.407974349332096 NA NA no change no change NA NA X:150473802 X:150469745 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA -MAMLD1--MAMLD1 BS_470DYRJQ -0.040307484111012 -0.040307484111012 NA NA no change no change NA NA X:150471490 X:150469745 ARRIBA in-frame 2 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA -MAMLD1--MAMLD1 BS_9BJARSX3 -0.794046388912479 -0.794046388912479 NA NA no change no change NA NA X:150471490 X:150469745 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA -MAMLD1--MAMLD1 BS_M8WP5T16 0.564901149382788 0.564901149382788 NA NA no change no change NA NA X:150471490 X:150469745 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA -MAMLD1--MAMLD1 BS_NDN62H0S 1.48121412289557 1.48121412289557 NA NA no change no change NA NA X:150471490 X:150462772 ARRIBA in-frame 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA -MAMLD1--MAMLD1 BS_NKRYMHEP 1.81280131701004 1.81280131701004 NA NA no change no change NA NA X:150471490 X:150462772 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA -MAMLD1--MAMLD1 BS_NRPG5K4K 0.306370941320307 0.306370941320307 NA NA no change no change NA NA X:150473802 X:150469745 ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA -MAMLD1--MAMLD1 BS_TMTV769C 0.653002790114532 0.653002790114532 NA NA no change no change NA NA X:150473802 X:150469745 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA -MAMLD1--MAMLD1 BS_WRQHPSXQ 0.243198308261227 0.243198308261227 NA NA no change no change NA NA X:150473802 X:150469745 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA -MAN1A2--TMEM211 BS_QW60M0FE 2.53178415573809 7.43580566726984 NA NA differentially expressed differentially expressed NA NA 1:117368485 22:24938287 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr1--chr22]],translocation MAN1A2 NA TMEM211 NA NA NA NA NA NA -MAN1A2--TMEM211 BS_QW60M0FE 2.53178415573809 7.43580566726984 NA NA differentially expressed differentially expressed NA NA 1:117368485 22:24939451 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr1--chr22]],translocation MAN1A2 NA TMEM211 NA NA NA NA NA NA -MAN1A2--TMEM211 BS_Y3G1X98S 3.17328047920306 5.78269147775598 NA NA differentially expressed differentially expressed NA NA 1:117368485 22:24938287 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr1--chr22]],translocation MAN1A2 NA TMEM211 NA NA NA NA NA NA -MANSC4--MRPS35 BS_7FWZ518S -0.288997168678364 0.532092951453622 NA NA no change no change NA NA 12:27762965 12:27714780 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_INVERSION:-:+:[6443]],duplication/3'-3' MANSC4 NA MRPS35 NA NA NA NA NA NA -MANSC4--MRPS35 BS_CQSAJ7BF 0.136390344308766 -0.132025166208047 NA NA no change no change NA NA 12:27762965 12:27714780 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_INVERSION:-:+:[6443]],duplication/3'-3' MANSC4 NA MRPS35 NA NA NA NA NA NA -MANSC4--MRPS35 BS_GS1KR5PK -0.803642081614369 0.199656112802399 NA NA no change no change NA NA 12:27762965 12:27714780 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_INVERSION:-:+:[6443]],duplication/3'-3' MANSC4 NA MRPS35 NA NA NA NA NA NA -MAP2--LINC01953(46928)/AC079610.3(52355) BS_RRAEQZ97 0.419591914295395 NA NA NA no change NA NA NA 2:209580100 2:213214640 ARRIBA other 3 0 medium [],inversion MAP2 NA LINC01953 AC079610.3 Oncogene NA NA NA NA -MAP2--MAP2 BS_MKM0EEN1 0.566502438573039 0.566502438573039 NA NA no change no change NA NA 2:209696748 2:209692625 ARRIBA in-frame 22 9 low [SELFIE,INTRACHROMOSOMAL[chr2:0.31Mb]],duplication/non-canonical_splicing MAP2 NA MAP2 NA Oncogene Oncogene NA NA NA -MAP2K2--RTN4R BS_K17VQECG -1.26454403344495 0.0103748039501517 NA NA no change no change NA NA 19:4117419 22:20243110 ARRIBA frameshift 10 1 high [INTERCHROMOSOMAL[chr19--chr22]],translocation MAP2K2 NA RTN4R NA Kinase, CosmicCensus, Kinase NA NA NA NA -MAP3K4--MAP3K4 BS_NGHK9RZP -0.596887094815724 -0.596887094815724 NA NA no change no change NA NA 6:161084617 6:161073466 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.13Mb]],duplication/non-canonical_splicing MAP3K4 NA MAP3K4 NA Kinase, TumorSuppressorGene, Kinase Kinase, TumorSuppressorGene, Kinase NA NA NA -MAP3K5--TAAR8(3395)/TAAR7P(1908) BS_3F4FQJMR 0.161093290489682 -0.219358000129583 NA NA no change no change NA NA 6:136592173 6:132557116 ARRIBA frameshift 2 0 medium [],deletion MAP3K5 NA TAAR8 TAAR7P Kinase, Kinase NA NA NA NA -MAP4--CNTN4 BS_81SP2HX4 -2.0899979036013 1.47541007523494 NA NA differentially expressed no change NA NA 3:47977865 3:2819486 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr3:44.79Mb]],inversion MAP4 NA CNTN4 NA Oncogene Oncogene NA NA NA -MAP4--FECHP1(63659)/KRT8P18(278192) BS_81SP2HX4 -2.0899979036013 53.2868556199498 NA -0.0897950133157401 differentially expressed differentially expressed NA no change 3:47977865 3:34937513 ARRIBA frameshift 4 0 medium [],inversion MAP4 NA FECHP1 KRT8P18 Oncogene NA NA NA NA -MAP4--KIF1A BS_3XY76V8T 0.853376179051082 0.301440370632433 NA NA no change no change NA NA 3:47869212 2:240769660 ARRIBA frameshift 1 3 medium [INTERCHROMOSOMAL[chr3--chr2]],translocation MAP4 NA KIF1A NA Oncogene NA NA NA NA -MAP4K3--PHLDA1 BS_W9AT0MR7 1.88908512826514 4.68903457893545 NA NA no change differentially expressed NA NA 2:39365750 12:76028076 ARRIBA other 4 0 low [INTERCHROMOSOMAL[chr2--chr12]],translocation/3'-3' MAP4K3 NA PHLDA1 NA Kinase NA NA NA NA -MAP4K4--PTCD3 BS_RRAEQZ97 0.278075356336498 0.914982977142445 NA NA no change no change NA NA 2:101790776 2:86131078 ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr2:15.55Mb]],duplication MAP4K4 NA PTCD3 NA Kinase NA NA NA NA -MAP4K4--PTCD3 BS_RRAEQZ97 0.278075356336498 0.914982977142445 NA NA no change no change NA NA 2:101797383 2:86131078 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr2:15.55Mb]],duplication MAP4K4 NA PTCD3 NA Kinase NA NA NA NA -MAP4K5--MAP4K5 BS_7G42J2SK 0.01508996717745 0.01508996717745 NA NA no change no change NA NA 14:50440013 14:50448832 ARRIBA in-frame 14 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing MAP4K5 NA MAP4K5 NA Kinase Kinase NA NA NA -MAP4K5--MAP4K5 BS_CXVJK2FY -0.192175669447443 -0.192175669447443 NA NA no change no change NA NA 14:50443729 14:50466645 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing MAP4K5 NA MAP4K5 NA Kinase Kinase NA NA NA -MAP4K5--MAP4K5 BS_NGHK9RZP 0.379361336226921 0.379361336226921 NA NA no change no change NA NA 14:50440013 14:50466645 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing MAP4K5 NA MAP4K5 NA Kinase Kinase NA NA NA -MAP7D2--MAP7D2 BS_HCP5C912 0.231991310631026 0.231991310631026 NA NA no change no change NA NA X:20042502 X:20052988 ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chrX:0.11Mb]],duplication/non-canonical_splicing MAP7D2 NA MAP7D2 NA NA NA NA NA NA -MAP7D2--MAP7D2 BS_N6NE6B3W 0.638660075576993 0.638660075576993 NA NA no change no change NA NA X:20042502 X:20052988 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.11Mb]],duplication/non-canonical_splicing MAP7D2 NA MAP7D2 NA NA NA NA NA NA -MAP7D2--MAP7D2 BS_YMAJC22S -0.0263172761247314 -0.0263172761247314 NA NA no change no change NA NA X:20042502 X:20052988 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.11Mb]],duplication/non-canonical_splicing MAP7D2 NA MAP7D2 NA NA NA NA NA NA -MAP7D2--MAP7D2 BS_ZXYDSBM9 -0.909910343299234 -0.909910343299234 NA NA no change no change NA NA X:20042502 X:20052988 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.11Mb]],duplication/non-canonical_splicing MAP7D2 NA MAP7D2 NA NA NA NA NA NA -MAPK13--DDX60L BS_MGAMKKBD 4.08346574128525 9.84261254236271 NA NA differentially expressed differentially expressed NA NA 6:36127955 4:168456152 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr6--chr4]],translocation MAPK13 NA DDX60L NA Oncogene, Kinase NA NA NA NA -MAPK8--KCNK18 BS_WH5HDE0A 2.69525736815752 50.4944304740649 NA NA differentially expressed differentially expressed NA NA 10:48306821 10:117194203 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr10:68.76Mb]],deletion MAPK8 NA KCNK18 NA Oncogene, Kinase NA NA NA NA -MAPK8--KCNK18 BS_WH5HDE0A 2.69525736815752 50.4944304740649 NA NA differentially expressed differentially expressed NA NA 10:48306821 10:117209497 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:68.76Mb]],deletion MAPK8 NA KCNK18 NA Oncogene, Kinase NA NA NA NA -MAPK8--MIR3663HG(14075)/RPL12P26(13034) BS_V96WVE3Z 2.34494920548416 -0.290162962551712 NA NA differentially expressed no change NA NA 10:48306821 10:117183134 ARRIBA other 30 0 high [],deletion MAPK8 NA MIR3663HG RPL12P26 Oncogene, Kinase NA NA NA NA -MAPK8--MIR3663HG(14075)/RPL12P26(13034) BS_WH5HDE0A 2.69525736815752 -0.290162962551712 NA NA differentially expressed no change NA NA 10:48306821 10:117183134 ARRIBA other 64 0 high [],deletion MAPK8 NA MIR3663HG RPL12P26 Oncogene, Kinase NA NA NA NA -MAPK8--SLIT1 BS_84XCR9GG 1.08450073522855 1.29316879540816 NA NA no change no change NA NA 10:48427096 10:97104888 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr10:48.56Mb]],inversion MAPK8 NA SLIT1 NA Oncogene, Kinase NA NA NA NA -MAPK8IP1P1(3115)/AC005829.2(11392)--KANSL1 BS_GNV89A5P NA 3.32655815751903 NA NA NA differentially expressed NA NA 17:46248159 17:46152966 ARRIBA other 1 0 low [],inversion MAPK8IP1P1 AC005829.2 KANSL1 NA NA NA NA NA NA -MAPK8IP1P1(3115)/AC005829.2(11392)--KANSL1 BS_N6NE6B3W NA 2.33913951452232 NA NA NA differentially expressed NA NA 17:46248159 17:46152966 ARRIBA other 1 0 low [],inversion MAPK8IP1P1 AC005829.2 KANSL1 NA NA NA NA NA NA -MAPK8IP1P1(3115)/AC005829.2(11392)--KANSL1 BS_Z45HD492 NA 3.17843640538298 NA NA NA differentially expressed NA NA 17:46248159 17:46152966 ARRIBA other 3 0 medium [],inversion MAPK8IP1P1 AC005829.2 KANSL1 NA NA NA NA NA NA -MAPK8IP3--HS3ST6 BS_C41DJZ1F 0.4533142064949 12.3146218833064 NA NA no change differentially expressed NA NA 16:1729578 16:1912205 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],inversion MAPK8IP3 NA HS3ST6 NA NA NA NA NA NA -MAPK8IP3--MSRB1 BS_C41DJZ1F 0.4533142064949 1.01879585622244 NA NA no change no change NA NA 16:1729578 16:1939143 ARRIBA frameshift 6 2 high [INTRACHROMOSOMAL[chr16:0.17Mb]],inversion MAPK8IP3 NA MSRB1 NA NA NA NA NA NA -MAPKAPK2--PTCHD3(67159)/RAB18(22647) BS_QWTE1CWR 1.87094794566939 0.694436778548057 NA -0.688283386789638 no change no change NA no change 1:206685508 10:27481527 ARRIBA frameshift 11 1 high [],translocation MAPKAPK2 NA PTCHD3 RAB18 Kinase, Oncogene, Kinase NA NA NA NA -MAPKAPK2--PTCHD3(67159)/RAB18(22647) BS_WKESC3XN 2.41944844785327 7.68102166399376 NA 0.126224392794894 differentially expressed differentially expressed NA no change 1:206685508 10:27481527 ARRIBA frameshift 10 0 high [],translocation MAPKAPK2 NA PTCHD3 RAB18 Kinase, Oncogene, Kinase NA NA NA NA -MAPT--MAPT BS_0T17SY47 0.775430563938571 0.775430563938571 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 9 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_1T19NFJ8 0.920389815248085 0.920389815248085 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 15 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_273HKCT4 0.754224239902336 0.754224239902336 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 15 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_39CGACC7 0.795494291265018 0.795494291265018 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 10 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_3W07B2TG -1.38521960291127 -1.38521960291127 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA in-frame 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_5NWDARXG -0.703318406893493 -0.703318406893493 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_5PEFNDCY -0.133178251620058 -0.133178251620058 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 17 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_7XRN3CFX 0.329201121072811 0.329201121072811 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 12 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_90B22NGP 1.553643398132 1.553643398132 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 15 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_ARFQ1WG3 1.23954760374052 1.23954760374052 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_BKR4E30C 1.04727288291646 1.04727288291646 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 7 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_BSV07M7Z 2.12560095682333 2.12560095682333 NA NA differentially expressed differentially expressed NA NA 17:45996664 17:45978375 ARRIBA frameshift 16 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_C51RB0YR -1.10545367845946 -1.10545367845946 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_C7N3J4NW 1.40820984121326 1.40820984121326 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 11 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_E4QK839R 1.34218201184553 1.34218201184553 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 9 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_ERJAJ0KA -0.0544095120288663 -0.0544095120288663 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA in-frame 10 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_EYSS0ZDS 0.0999635034839158 0.0999635034839158 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_FEPRNEXX 1.07517748563532 1.07517748563532 NA NA no change no change NA NA 17:45996664 17:45987040 ARRIBA frameshift 15 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_GG9W3J9Y 1.82238436636934 1.82238436636934 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 15 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_GMDQK06Q 0.10103867078346 0.10103867078346 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_GNV89A5P 1.40729785100943 1.40729785100943 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 12 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_HCP5C912 1.20400114829913 1.20400114829913 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 16 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_HV8PFRBR -0.272525181845148 -0.272525181845148 NA NA no change no change NA NA 17:45996664 17:45987040 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_J71N7D09 0.774739933096847 0.774739933096847 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 10 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_K5802F84 0.883212155784538 0.883212155784538 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 15 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_KPT2WPHW 1.84830317657097 1.84830317657097 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 17 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_N5DVEJXT 0.590865901318132 0.590865901318132 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_N6NE6B3W 1.24539223623562 1.24539223623562 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 30 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_N8J1DP02 0.559169094819409 0.559169094819409 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA in-frame 12 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_NKRYMHEP 1.47651634203376 1.47651634203376 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 8 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_QC3XCE6X 1.40820984121326 1.40820984121326 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 16 5 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_QPPPGYP4 1.68630484628571 1.68630484628571 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 15 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_S1M423AB 0.326654284867085 0.326654284867085 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_SBFNFZ8B 1.92327154776162 1.92327154776162 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 14 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_SDA4RMMG 0.195329106154059 0.195329106154059 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 11 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_TG93XC55 1.92886975583367 1.92886975583367 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 20 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_Y7F9E2E9 0.270000417850628 0.270000417850628 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 13 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_YCREDZTJ 0.82852452242658 0.82852452242658 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 14 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_Z2NWPQKF 0.5517906264195 0.5517906264195 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 4 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_ZA9XT151 -0.87476212060266 -0.87476212060266 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_ZH1FBX50 1.77385489455797 1.77385489455797 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 16 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MAPT--MAPT BS_ZR96A4FH 1.27478149489635 1.27478149489635 NA NA no change no change NA NA 17:45996664 17:45978375 ARRIBA frameshift 18 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA -MARCH1--MARCH1 BS_TM9MH0RP 4.23012471418801 4.23012471418801 NA NA differentially expressed differentially expressed NA NA 4:163854021 4:164111662 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.86Mb]],duplication/non-canonical_splicing MARCH1 NA MARCH1 NA NA NA NA NA NA -MARCH10--MARCH10 BS_PKK3BZRG 3.96188517299476 3.96188517299476 NA NA differentially expressed differentially expressed NA NA 17:62722488 17:62725104 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.11Mb]],duplication/non-canonical_splicing MARCH10 NA MARCH10 NA NA NA NA NA NA -MARCH6--HMGXB4 BS_QWTE1CWR 1.49294810840784 2.8518532142726 NA NA no change differentially expressed NA NA 5:10353917 22:35262323 ARRIBA frameshift 18 0 high [INTERCHROMOSOMAL[chr5--chr22]],translocation MARCH6 NA HMGXB4 NA NA NA NA NA NA -MARCH6--HMGXB4 BS_QWTE1CWR 1.49294810840784 2.8518532142726 NA NA no change differentially expressed NA NA 5:10353917 22:35263078 ARRIBA in-frame 5 0 medium [INTERCHROMOSOMAL[chr5--chr22]],translocation MARCH6 NA HMGXB4 NA NA NA NA NA NA -MARCH8--MARCH8 BS_912NX4Y0 0.669568483849239 0.669568483849239 NA NA no change no change NA NA 10:45459740 10:45461411 ARRIBA frameshift 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr10:0.14Mb]],duplication MARCH8 NA MARCH8 NA NA NA NA NA NA -MARCH8--MARCH8 BS_TG93XC55 0.50713094099934 0.50713094099934 NA NA no change no change NA NA 10:45459740 10:45461411 ARRIBA frameshift 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr10:0.14Mb]],duplication MARCH8 NA MARCH8 NA NA NA NA NA NA -MARCH9--B4GALNT1(20621)/RPL13AP23(20689) BS_7327SDAQ 4.44269492375163 1.80398420032605 NA 20.4603149896146 differentially expressed no change NA differentially expressed 12:57757084 12:57653976 ARRIBA frameshift 6 0 medium [],duplication MARCH9 NA B4GALNT1 RPL13AP23 NA NA NA NA NA -MARCH9--MARS BS_A0DYVX9J 3.07968714354907 2.59558396286173 NA NA differentially expressed differentially expressed NA NA 12:57758300 12:57487937 ARRIBA frameshift 3 2 medium [INTRACHROMOSOMAL[chr12:0.24Mb]],duplication MARCH9 NA MARS NA NA Oncogene NA NA NA -MARCH9--ZNF101P1(27641)/U3(39456) BS_A0DYVX9J 3.07968714354907 -0.276099735732021 NA 0.0576938914551364 differentially expressed no change NA no change 12:57758710 10:28368583 ARRIBA frameshift 128 5 high [],translocation MARCH9 NA ZNF101P1 U3 NA NA NA NA NA -MARK2--CNTN5 BS_B1C6GZ84 1.39776527204114 -0.674346345241447 NA NA no change no change NA NA 11:63900110 11:99368473 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr11:35.11Mb]],inversion/3'-3' MARK2 NA CNTN5 NA Kinase, Kinase NA NA NA NA -MARK2--RPL21P41(242182)/KBTBD8(118713) BS_QXKRN6CR -0.521526894924951 -0.0294627825494395 NA -0.544526873004053 no change no change NA no change 11:63839560 3:66879594 ARRIBA frameshift 6 1 high [],translocation MARK2 NA RPL21P41 KBTBD8 Kinase, Kinase NA NA NA NA -MARK2--STK33 BS_3W07B2TG 0.729603474323404 0.733370307543051 NA NA no change no change NA NA 11:63839560 11:8464822 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr11:55.24Mb]],inversion MARK2 NA STK33 NA Kinase, Kinase Kinase, Kinase NA NA NA -MAST1--GRXCR1 BS_K17VQECG -0.775925371738836 8.05440506247101 NA NA no change differentially expressed NA NA 19:12848057 4:42962892 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr19--chr4]],translocation MAST1 NA GRXCR1 NA Kinase, Kinase NA NA NA NA -MAST4--MAST4 BS_NGHK9RZP 3.15985578512675 3.15985578512675 NA NA differentially expressed differentially expressed NA NA 5:67145379 5:67136563 ARRIBA in-frame 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.57Mb]],duplication/non-canonical_splicing MAST4 NA MAST4 NA Kinase, Kinase Kinase, Kinase NA NA NA -MBNL1--BRAF BS_49F4RAA4 5.37559112531502 0.773812262266101 NA NA differentially expressed no change NA NA 3:152447773 7:140783157 ARRIBA in-frame 18 2 high [INTERCHROMOSOMAL[chr3--chr7]],translocation MBNL1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -MBNL1--BRAF BS_49F4RAA4 5.37559112531502 0.773812262266101 NA NA differentially expressed no change NA NA 3:152445539 7:140783157 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr3--chr7]],translocation MBNL1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -MBNL1--BRAF BS_ZHHAM3AN 5.7896130605859 1.19449968298627 NA NA differentially expressed no change NA NA 3:152447773 7:140783157 ARRIBA in-frame 19 0 high [INTERCHROMOSOMAL[chr3--chr7]],translocation MBNL1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -MBNL1--TRG-AS1 BS_49F4RAA4 5.37559112531502 15.8006760494219 NA NA differentially expressed differentially expressed NA NA 3:152453806 7:38342309 ARRIBA other 3 0 low [INTERCHROMOSOMAL[chr3--chr7]],translocation MBNL1 NA TRG-AS1 NA NA NA NA NA NA -MBNL2--RERGL BS_6WP1FHTE -1.26527339741786 -1.62696998864893 NA NA no change no change NA NA 13:97276409 12:18225659 ARRIBA frameshift 13 1 high [INTERCHROMOSOMAL[chr13--chr12]],translocation/5'-5' MBNL2 NA RERGL NA TranscriptionFactor NA NA NA NA -MBNL2--RERGL BS_DRY58DTF -1.73425428439141 -1.96650168659314 NA NA no change no change NA NA 13:97276409 12:18225659 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr13--chr12]],translocation/5'-5' MBNL2 NA RERGL NA TranscriptionFactor NA NA NA NA -MBNL2--RERGL BS_E60JZ9Z3 -1.70418044145985 -2.03386279972777 NA NA no change differentially expressed NA NA 13:97276409 12:18225659 ARRIBA frameshift 13 0 high [INTERCHROMOSOMAL[chr13--chr12]],translocation/5'-5' MBNL2 NA RERGL NA TranscriptionFactor NA NA NA NA -MBOAT2--FBLN2 BS_C41DJZ1F 2.82727196388312 6.81677358549248 NA NA differentially expressed differentially expressed NA NA 2:8908621 3:13626445 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr2--chr3]],translocation MBOAT2 NA FBLN2 NA NA CosmicCensus NA NA NA -MCF2--MCF2 BS_K5802F84 -0.929251915059878 -0.929251915059878 NA NA no change no change NA NA X:139589835 X:139605779 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.13Mb]],duplication/non-canonical_splicing MCF2 NA MCF2 NA Oncogene Oncogene NA NA NA -MCF2L2--MCF2L2 BS_1NPD7PVG -0.106041739969271 -0.106041739969271 NA NA no change no change NA NA 3:183276872 3:183318217 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing MCF2L2 NA MCF2L2 NA NA NA NA NA NA -MCF2L2--MCF2L2 BS_KVNGNETA 0.492332083177876 0.492332083177876 NA NA no change no change NA NA 3:183276872 3:183318217 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing MCF2L2 NA MCF2L2 NA NA NA NA NA NA -MCM9--MCM9 BS_0C7VZC0A 3.68820664425288 3.68820664425288 NA NA differentially expressed differentially expressed NA NA 6:118813102 6:118856545 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MCM9--MCM9 BS_258RRGDM 2.01725616021424 2.01725616021424 NA NA differentially expressed differentially expressed NA NA 6:118813102 6:118856545 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MCM9--MCM9 BS_3X9WMZGJ 1.37813707044024 1.37813707044024 NA NA no change no change NA NA 6:118813102 6:118856545 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MCM9--MCM9 BS_A13BMEF5 3.17880213451907 3.17880213451907 NA NA differentially expressed differentially expressed NA NA 6:118813102 6:118856545 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MCM9--MCM9 BS_EHVYJAVA 2.67163179749525 2.67163179749525 NA NA differentially expressed differentially expressed NA NA 6:118813102 6:118856545 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MCM9--MCM9 BS_G7AGNB5G 3.38264558394982 3.38264558394982 NA NA differentially expressed differentially expressed NA NA 6:118813102 6:118856545 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MCM9--MCM9 BS_N6NE6B3W 1.48388204738549 1.48388204738549 NA NA no change no change NA NA 6:118813102 6:118856545 ARRIBA in-frame 2 2 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MCM9--MCM9 BS_S1KK7XRH 3.33536469072209 3.33536469072209 NA NA differentially expressed differentially expressed NA NA 6:118813102 6:118856545 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MCM9--MCM9 BS_VPMKHW9X 1.54420896674022 1.54420896674022 NA NA no change no change NA NA 6:118813102 6:118856545 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MCM9--MCM9 BS_XJTW0P8P 2.14311405074217 2.14311405074217 NA NA differentially expressed differentially expressed NA NA 6:118813102 6:118856545 ARRIBA other 4 1 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MCM9--MCM9 BS_ZH1FBX50 1.25085239437806 1.25085239437806 NA NA no change no change NA NA 6:118813102 6:118856545 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MCTP2--AC009432.1(27402)/AC087633.2(212836) BS_4B0BAVTX 5.87445550192544 NA NA NA differentially expressed NA NA NA 15:94315637 15:94628223 ARRIBA frameshift 2 0 medium [],inversion MCTP2 NA AC009432.1 AC087633.2 NA NA NA NA NA -MCUB--SPATA5 BS_DV86M0Y7 NA 7.86609310438296 NA NA NA differentially expressed NA NA 4:109664394 4:123256016 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr4:13.23Mb]],deletion MCUB NA SPATA5 NA NA NA NA NA NA -MDFIC--AC093714.1(86886)/AC093714.2(20225) BS_W4DB5RP1 5.75611674303113 NA NA NA differentially expressed NA NA NA 7:114923127 7:115769504 ARRIBA frameshift 2 0 high [],inversion MDFIC NA AC093714.1 AC093714.2 NA NA NA NA NA -MDFIC--AL590135.1(9366)/AC093426.1(185539) BS_MM20BVW9 5.0799789997633 NA NA NA differentially expressed NA NA NA 7:114979781 1:239062269 ARRIBA frameshift 3 0 high [],translocation MDFIC NA AL590135.1 AC093426.1 NA NA NA NA NA -MDFIC--CAPZA2 BS_W4DB5RP1 5.75611674303113 0.179515739308821 NA NA differentially expressed no change NA NA 7:114923127 7:116910233 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:1.79Mb]],deletion MDFIC NA CAPZA2 NA NA NA NA NA NA -MDFIC--CTTNBP2 BS_6DCSD5Y6 11.3909554752578 6.06964331817141 NA NA differentially expressed differentially expressed NA NA 7:114923127 7:117784454 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr7:2.69Mb]],inversion MDFIC NA CTTNBP2 NA NA NA NA NA NA -MDFIC--CTTNBP2 BS_6DCSD5Y6 11.3909554752578 6.06964331817141 NA NA differentially expressed differentially expressed NA NA 7:114923127 7:117861316 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:2.69Mb]],inversion MDFIC NA CTTNBP2 NA NA NA NA NA NA -MDFIC--MIPEPP2(263441)/AL590135.1(10107) BS_MM20BVW9 5.0799789997633 -0.0551323681223612 NA NA differentially expressed no change NA NA 7:114979781 1:239042641 ARRIBA frameshift 5 3 high [],translocation MDFIC NA MIPEPP2 AL590135.1 NA NA NA NA NA -MDFIC--RNU1-29P(103638)/AC004872.1(31277) BS_6DCSD5Y6 11.3909554752578 NA NA NA differentially expressed NA NA NA 7:114923127 7:120109739 ARRIBA frameshift 78 0 medium [],inversion MDFIC NA RNU1-29P AC004872.1 NA NA NA NA NA -MDFIC--ST7 BS_6DCSD5Y6 11.3909554752578 4.80906422685076 NA NA differentially expressed differentially expressed NA NA 7:114923127 7:117212383 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr7:1.93Mb]],inversion/3'-3' MDFIC NA ST7 NA NA TumorSuppressorGene NA NA NA -MDGA2--MDGA2 BS_0T17SY47 4.08865432199285 4.08865432199285 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_1G3WYEN3 5.9461439986465 5.9461439986465 NA NA differentially expressed differentially expressed NA NA 14:46873433 14:47035304 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_398KYV92 5.12362359808256 5.12362359808256 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_5K3R0F5D 6.98585288081191 6.98585288081191 NA NA differentially expressed differentially expressed NA NA 14:46873433 14:47035304 ARRIBA in-frame 4 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_86Q14TZG 3.96207721913262 3.96207721913262 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_A3QZB9Y2 7.11895591442939 7.11895591442939 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_FWMJPKCV 10.1110835530893 10.1110835530893 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 21 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_HCP5C912 7.00142862214254 7.00142862214254 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 26 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_KPT2WPHW 6.79427963551938 6.79427963551938 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 16 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_M4NVX721 5.66343876784714 5.66343876784714 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_MF47B9ZW 5.63480772547522 5.63480772547522 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_N6NE6B3W 2.89442815267087 2.89442815267087 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_P39SQPTS 3.5339724437662 3.5339724437662 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_SBFNFZ8B 7.35409269585873 7.35409269585873 NA NA differentially expressed differentially expressed NA NA 14:46873433 14:47035304 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_TG93XC55 6.50110713235004 6.50110713235004 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 13 3 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_VPMKHW9X 4.94964655371396 4.94964655371396 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_W18SF91A 4.0152834449537 4.0152834449537 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_WCRKYV0T 6.10318516486596 6.10318516486596 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_ZR96A4FH 6.82682337679266 6.82682337679266 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDGA2--MDGA2 BS_ZTWGFWTX 7.00142862214254 7.00142862214254 NA NA differentially expressed differentially expressed NA NA 14:46920012 14:47035304 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA -MDM2--CARD8 BS_D144EJRQ 2.11366531468313 2.27267892718441 NA NA differentially expressed differentially expressed NA NA 12:68824650 19:48211762 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr12--chr19]],translocation MDM2 NA CARD8 NA CosmicCensus, Oncogene Oncogene NA NA NA -MDM2--HNRNPA1 BS_PJPGVD62 0.387106963067801 0.450881137640569 NA NA no change no change NA NA 12:68835475 12:54283825 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr12:14.52Mb]],duplication MDM2 NA HNRNPA1 NA CosmicCensus, Oncogene NA NA NA NA -ME2--AC026898.1(12993)/SMAD2(92219) BS_M0QYNVK8 -0.563790277518977 NA NA 2.66997401297741 no change NA NA differentially expressed 18:50932360 18:47716738 ARRIBA frameshift 2 0 medium [],duplication ME2 NA AC026898.1 SMAD2 NA NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA -MECR--BX842568.2(940)/BX842568.3(21158) BS_NGHK9RZP -2.27882472593782 3.61067745108257 NA NA differentially expressed differentially expressed NA NA 1:29230731 X:36964365 ARRIBA frameshift 2 0 medium [],translocation MECR NA BX842568.2 BX842568.3 NA NA NA NA NA -MED13L--CUX2 BS_K2FHZGTK 2.6079077215546 -0.684395726294581 NA NA differentially expressed no change NA NA 12:116096669 12:111085070 ARRIBA frameshift 45 3 high [INTRACHROMOSOMAL[chr12:4.60Mb]],deletion/5'-5' MED13L NA CUX2 NA NA TranscriptionFactor NA NA NA -MED27--AL590623.1(544981)/KSR1P1(2821221) BS_A0DYVX9J 5.01599826145719 NA NA NA differentially expressed NA NA NA 9:132077442 10:39328089 ARRIBA frameshift 6 0 medium [],translocation MED27 NA AL590623.1 KSR1P1 NA NA NA NA NA -MED4--MED4(13419)/POLR2KP2(25808) BS_N6NE6B3W -0.0605368743965012 -0.0605368743965012 NA 2.14139968059666 no change no change NA differentially expressed 13:48090352 13:48108550 ARRIBA frameshift 3 0 low [],duplication MED4 NA MED4 POLR2KP2 NA NA NA NA NA -MED6P1(82730)/AL353149.1(126576)--LIPF BS_7BTZQKYY -0.0672813462535283 2.66143077953988 NA NA no change differentially expressed NA NA 10:88132553 10:88667287 ARRIBA other 7 0 high [],deletion MED6P1 AL353149.1 LIPF NA NA NA NA NA NA -MED6P1(82730)/AL353149.1(126576)--LIPJ BS_8ZP3CBQA -0.0672813462535283 4.28193767513622 NA NA no change differentially expressed NA NA 10:88132553 10:88602576 ARRIBA other 7 0 high [],deletion MED6P1 AL353149.1 LIPJ NA NA NA NA NA NA -MED6P1(82730)/AL353149.1(126576)--LIPJ BS_CZ3NA7KV -0.0672813462535283 6.5397266301293 NA NA no change differentially expressed NA NA 10:88132553 10:88602576 ARRIBA other 5 1 high [],deletion MED6P1 AL353149.1 LIPJ NA NA NA NA NA NA -MEF2D--ANGPTL1 BS_KE56MMY0 1.56039480017403 4.30049844458814 NA NA no change differentially expressed NA NA 1:156500486 1:178869223 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr1:22.35Mb]],duplication MEF2D NA ANGPTL1 NA Oncogene, TranscriptionFactor NA NA NA NA -MEF2D--ANGPTL1 BS_KE56MMY0 1.56039480017403 4.30049844458814 NA NA no change differentially expressed NA NA 1:156500486 1:178870874 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr1:22.35Mb]],duplication MEF2D NA ANGPTL1 NA Oncogene, TranscriptionFactor NA NA NA NA -MEG8--MEG8 BS_ARBQDTT5 1.44746498168235 1.44746498168235 NA NA no change no change NA NA 14:100940450 14:100913432 ARRIBA other 9 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA -MEG8--MEG8 BS_CXVJK2FY 5.96079270142131 5.96079270142131 NA NA differentially expressed differentially expressed NA NA 14:100942838 14:100913432 ARRIBA other 37 5 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA -MEG8--MEG8 BS_DY9NTFQR 1.69038885522144 1.69038885522144 NA NA no change no change NA NA 14:100949596 14:100913432 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA -MEG8--MEG8 BS_EK5PCKY0 6.00189193239957 6.00189193239957 NA NA differentially expressed differentially expressed NA NA 14:100942838 14:100913432 ARRIBA other 67 15 high [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA -MEG8--MEG8 BS_FWMJPKCV 2.9459711032427 2.9459711032427 NA NA differentially expressed differentially expressed NA NA 14:100940450 14:100913432 ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA -MEG8--MEG8 BS_G63HYD6N 0.856741061687955 0.856741061687955 NA NA no change no change NA NA 14:100958343 14:100913432 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA -MEG8--MEG8 BS_MQCKXD60 5.16931533508568 5.16931533508568 NA NA differentially expressed differentially expressed NA NA 14:100955949 14:100913432 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA -MEG8--MEG8 BS_N6NE6B3W 2.82061351829023 2.82061351829023 NA NA differentially expressed differentially expressed NA NA 14:100955949 14:100913432 ARRIBA other 11 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA -MEG8--MEG8 BS_NGHK9RZP 1.78775144229164 1.78775144229164 NA NA no change no change NA NA 14:100942838 14:100913432 ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA -MEG8--MEG8 BS_SXCZ3CXN 0.774474157491766 0.774474157491766 NA NA no change no change NA NA 14:100949596 14:100913432 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA -MEG8--MEG8 BS_W80TJC27 3.92831367500586 3.92831367500586 NA NA differentially expressed differentially expressed NA NA 14:100955949 14:100913432 ARRIBA other 14 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA -MEG8--MEG8 BS_XF0ZX2B3 4.01771047796005 4.01771047796005 NA NA differentially expressed differentially expressed NA NA 14:100955949 14:100913432 ARRIBA other 24 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA -MEGF8--AL121832.1(3122)/GATA5(12754) BS_DRY58DTF -0.305304364187075 NA NA -0.450859439670077 no change NA NA no change 19:42371482 20:62450743 ARRIBA frameshift 2 0 medium [],translocation MEGF8 NA AL121832.1 GATA5 NA NA NA TumorSuppressorGene, TranscriptionFactor NA -MEGF9--IFT122 BS_RXN5T5YT -0.388332411021859 0.828918979739024 NA NA no change no change NA NA 9:120713988 3:129504531 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr9--chr3]],translocation MEGF9 NA IFT122 NA NA NA NA NA NA -MELK--MELK BS_XBQZYS8G 38.3965100943052 38.3965100943052 NA NA differentially expressed differentially expressed NA NA 9:36674937 9:36669310 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.10Mb]],duplication/non-canonical_splicing MELK NA MELK NA Kinase, Kinase Kinase, Kinase NA NA NA -MEN1--AC015771.1(172257)/Y_RNA(21436) BS_CZ3NA7KV -1.61673741097542 NA NA -0.162236315085263 no change NA NA no change 11:64807715 11:24434475 ARRIBA frameshift 13 2 medium [],deletion MEN1 NA AC015771.1 Y_RNA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -MEN1--CPAMD8 BS_W80TJC27 -1.20455233652823 -0.279639172420933 NA NA no change no change NA NA 11:64803945 19:16930184 ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr11--chr19]],translocation/5'-5' MEN1 NA CPAMD8 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -MET--CAMK2B BS_4QW2S1Q8 14.5303902303343 -0.10301693865396 NA NA differentially expressed no change NA NA 7:116758620 7:44284225 ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chr7:72.34Mb]],inversion MET NA CAMK2B NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, Oncogene, Kinase NA NA NA -MET--GCK BS_4QW2S1Q8 14.5303902303343 -0.552938346181626 NA NA differentially expressed no change NA NA 7:116783469 7:44153463 ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr7:72.47Mb]],inversion MET NA GCK NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, Kinase NA NA NA -MET--PTPRZ1 BS_45J79YTF 11.3103218377188 4.69881043444573 NA NA differentially expressed differentially expressed NA NA 7:116700284 7:122010334 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:5.07Mb]],deletion MET NA PTPRZ1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -MET(10832)/CAPZA2(1852)--MET BS_6DCSD5Y6 12.480730303402 12.480730303402 -0.109114763795844 NA differentially expressed differentially expressed no change NA 7:116809218 7:116739950 ARRIBA other 48 0 high [],duplication MET CAPZA2 MET NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -METTL12--C11orf95 BS_H4NXBD2D 1.08218981294325 4.35359837542632 NA NA no change differentially expressed NA NA 11:62665946 11:63763869 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.09Mb]],inversion METTL12 NA C11orf95 NA NA NA NA NA NA -METTL15--AKIP1 BS_3W07B2TG 0.910144719144535 0.831644629440812 NA NA no change no change NA NA 11:28110401 11:8914826 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr11:19.19Mb]],duplication METTL15 NA AKIP1 NA NA NA NA NA NA -METTL22--LMO2(62504)/CAPRIN1(96890) BS_6JHXXVR7 1.04444230444293 -1.36133731752072 NA 4.57881938360767 no change no change NA differentially expressed 16:8625798 11:33954793 ARRIBA frameshift 30 4 high [],translocation METTL22 NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA -MFHAS1--PRAG1 BS_Z85M2R3N 1.48785972124293 NA NA NA no change NA NA NA 8:8890061 8:8381834 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr8:0.40Mb]],deletion MFHAS1 NA PRAG1 NA Oncogene Kinase NA NA NA -MFSD1--AC131211.1(299070)/TOMM22P6(365563) BS_6JHXXVR7 2.20145588663795 NA NA 116.808189078369 differentially expressed NA NA differentially expressed 3:158809287 3:162120978 ARRIBA frameshift 2 0 low [],deletion MFSD1 NA AC131211.1 TOMM22P6 NA NA NA NA NA -MFSD1--AC131211.1(382829)/TOMM22P6(281804) BS_6JHXXVR7 2.20145588663795 NA NA 116.808189078369 differentially expressed NA NA differentially expressed 3:158809287 3:162204737 ARRIBA frameshift 5 1 high [],deletion MFSD1 NA AC131211.1 TOMM22P6 NA NA NA NA NA -MFSD1--AC131211.1(382829)/TOMM22P6(281804) BS_KE56MMY0 1.87178811078579 NA NA -0.0412199157730631 no change NA NA no change 3:158809287 3:162204737 ARRIBA frameshift 2 1 high [],deletion MFSD1 NA AC131211.1 TOMM22P6 NA NA NA NA NA -MFSD14B--RTFDC1 BS_FCAKKZ20 NA -1.00217742274922 NA NA NA no change NA NA 9:94446936 20:56513315 ARRIBA in-frame 14 3 high [INTERCHROMOSOMAL[chr9--chr20]],translocation MFSD14B NA RTFDC1 NA NA NA NA NA NA -MFSD14B--RTFDC1 BS_FCAKKZ20 NA -1.00217742274922 NA NA NA no change NA NA 9:94441099 20:56513315 ARRIBA in-frame 6 1 high [INTERCHROMOSOMAL[chr9--chr20]],translocation MFSD14B NA RTFDC1 NA NA NA NA NA NA -MFSD14C--ADGRG5 BS_1QXEC43H NA 0.497001019887048 NA NA NA no change NA NA 9:96925773 16:57578322 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr9--chr16]],translocation/5'-5' MFSD14C NA ADGRG5 NA NA NA NA NA NA -MGAT4A--GCOM1 BS_49FQXT2E 2.24910144408847 0.599799427902145 NA NA differentially expressed no change NA NA 2:98635222 15:57618033 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr2--chr15]],translocation MGAT4A NA GCOM1 NA NA NA NA NA NA -MGAT4A--MYZAP BS_49FQXT2E 2.24910144408847 -0.483679049027501 NA NA differentially expressed no change NA NA 2:98635222 15:57618033 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr2--chr15]],translocation MGAT4A NA MYZAP NA NA NA NA NA NA -MGLL--AL592466.1(166743)/LINC01515(88625) BS_H1ZS5FMZ -2.22190061529154 NA NA 4.74110899453536 differentially expressed NA NA differentially expressed 3:127781789 10:65481713 ARRIBA frameshift 2 0 medium [],translocation MGLL NA AL592466.1 LINC01515 NA NA NA NA NA -MGLL--ERC2 BS_FAQQ0GCQ 0.0376555447690341 -1.18887183324169 NA NA no change no change NA NA 3:127821694 3:55511276 ARRIBA frameshift 6 2 medium [INTRACHROMOSOMAL[chr3:71.22Mb]],deletion MGLL NA ERC2 NA NA Oncogene NA NA NA -MGMT--AL355537.2(217541)/AL391869.1(100648) BS_KDSTG5YY 2.22692867254858 NA NA NA differentially expressed NA NA NA 10:129536377 10:129177603 ARRIBA frameshift 2 0 medium [],duplication MGMT NA AL355537.2 AL391869.1 CosmicCensus NA NA NA NA -MIATNB--ZNF735(6743)/ZNF679(1223) BS_70FFPA51 3.34991664466061 -0.181747549788271 NA -0.144967138566929 differentially expressed no change NA no change 22:26726794 7:64227251 ARRIBA other 1 1 medium [],translocation MIATNB NA ZNF735 ZNF679 NA TranscriptionFactor NA TranscriptionFactor NA -MICAL3--LINC01634(30720)/AC016027.1(7839) BS_WKESC3XN 1.47718792873868 NA NA NA no change NA NA NA 22:18001393 22:18068688 ARRIBA other 5 0 medium [],duplication MICAL3 NA LINC01634 AC016027.1 NA NA NA NA NA -MICAL3--MICAL3 BS_QWTE1CWR -0.197612193730987 -0.197612193730987 NA NA no change no change NA NA 22:18024281 22:17895491 ARRIBA other 2 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr22:0.24Mb]],inversion/5'-5' MICAL3 NA MICAL3 NA NA NA NA NA NA -MICALL2--HIPK2 BS_9F09XV62 -0.0461467070259852 2.83438417621037 NA NA no change differentially expressed NA NA 7:1436742 7:139631725 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr7:138.10Mb]],duplication MICALL2 NA HIPK2 NA NA Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA -MICU2--GPR12(92650)/FGFR1OP2P1(51927) BS_QWTE1CWR -2.27536707995628 -1.55600140279312 NA -0.143426056515005 differentially expressed no change NA no change 13:21603939 13:26853435 ARRIBA frameshift 3 0 high [],inversion MICU2 NA GPR12 FGFR1OP2P1 NA NA NA NA NA -MID1--C1QTNF7 BS_RCCN63K6 1.68915482684479 4.57541828907599 NA NA no change differentially expressed NA NA X:10566888 4:15442168 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chrX--chr4]],translocation MID1 NA C1QTNF7 NA Oncogene NA NA NA NA -MID1--C1QTNF7 BS_RCCN63K6 1.68915482684479 4.57541828907599 NA NA no change differentially expressed NA NA X:10567002 4:15442168 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chrX--chr4]],translocation MID1 NA C1QTNF7 NA Oncogene NA NA NA NA -MID1--CC2D2A BS_RCCN63K6 1.68915482684479 3.20912931406333 NA NA no change differentially expressed NA NA X:10566888 4:15475915 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chrX--chr4]],translocation MID1 NA CC2D2A NA Oncogene NA NA NA NA -MID2--THEM7P BS_4B0BAVTX 2.90650453335041 -0.488102983182883 NA NA differentially expressed no change NA NA X:107854704 11:32296733 ARRIBA frameshift 12 0 high [INTERCHROMOSOMAL[chrX--chr11]],translocation/5'-5' MID2 NA THEM7P NA NA NA NA NA NA -MIEN1--MELTF BS_M026T44Q -1.04087482979009 NA NA NA no change NA NA NA 17:39729559 3:197021246 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr17--chr3]],translocation MIEN1 NA MELTF NA NA NA NA NA NA -MINDY4--LINC01422 BS_70FFPA51 NA 2.79496787797483 NA NA NA differentially expressed NA NA 7:30882993 22:26906578 ARRIBA frameshift 6 1 high [INTERCHROMOSOMAL[chr7--chr22]],translocation MINDY4 NA LINC01422 NA NA NA NA NA NA -MINDY4--LINC01422 BS_70FFPA51 NA 2.79496787797483 NA NA NA differentially expressed NA NA 7:30882993 22:26920377 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr7--chr22]],translocation MINDY4 NA LINC01422 NA NA NA NA NA NA -MIPEP--MIPEP BS_1EBQ3T20 -0.21253334048278 -0.21253334048278 NA NA no change no change NA NA 13:23798724 13:23886506 ARRIBA in-frame 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr13:0.16Mb]],duplication MIPEP NA MIPEP NA NA NA NA NA NA -MIPOL1--LRRC4C BS_KE56MMY0 5.46856773097645 -2.10733589254259 NA NA differentially expressed differentially expressed NA NA 14:37247907 11:40714009 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr14--chr11]],translocation/5'-5' MIPOL1 NA LRRC4C NA NA NA NA NA NA -MIR100HG--MIR100HG BS_QTSXW7DA 3.90597806994088 3.90597806994088 NA NA differentially expressed differentially expressed NA NA 11:122066136 11:122089048 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.53Mb]],duplication MIR100HG NA MIR100HG NA NA NA NA NA NA -MIR101-1(7613)/AL357078.1(506)--KDF1 BS_RCCN63K6 NA 5.2762926545691 NA NA NA differentially expressed NA NA 1:65066121 1:26950756 ARRIBA other 4 0 high [],deletion MIR101-1 AL357078.1 KDF1 NA TumorSuppressorGene NA NA NA NA -MIR137HG(4640)/NFU1P2(22497)--SNX7 BS_F8N6CFQE 4.1346615625055 2.12877189480779 54.0726305988611 NA differentially expressed differentially expressed differentially expressed NA 1:98054503 1:98684885 ARRIBA other 1 1 medium [],deletion MIR137HG NFU1P2 SNX7 NA NA NA NA NA NA -MIR137HG(4640)/NFU1P2(22497)--SNX7 BS_QHS3V0GP 5.9692670476869 0.830870963520345 115.469621857415 NA differentially expressed no change differentially expressed NA 1:98054503 1:98684885 ARRIBA other 3 0 high [],deletion MIR137HG NFU1P2 SNX7 NA NA NA NA NA NA -MIR181A1HG--PARD3 BS_QWTE1CWR 5.9170603617819 1.29687941012548 NA NA differentially expressed no change NA NA 1:198937226 10:34269899 ARRIBA other 26 5 high [INTERCHROMOSOMAL[chr1--chr10]],translocation MIR181A1HG NA PARD3 NA NA NA NA NA NA -MIR181A1HG--PARD3 BS_WKESC3XN 14.0863856076043 2.51233650035442 NA NA differentially expressed differentially expressed NA NA 1:198937226 10:34269899 ARRIBA other 33 5 high [INTERCHROMOSOMAL[chr1--chr10]],translocation MIR181A1HG NA PARD3 NA NA NA NA NA NA -MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_398KYV92 3.66984731276891 0.0290971855303767 NA NA differentially expressed no change NA NA 8:74612940 8:74500513 ARRIBA other 4 0 medium [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA -MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_39CGACC7 1.05410809937805 -0.422015217451815 NA NA no change no change NA NA 8:74612940 8:74500513 ARRIBA other 4 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA -MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_3MS8WVNR 1.42298149049672 -0.59389481518067 NA NA no change no change NA NA 8:74612940 8:74500513 ARRIBA other 3 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA -MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_8MA5B8Y9 2.83485383899229 -0.103580594574622 NA NA differentially expressed no change NA NA 8:74612940 8:74500513 ARRIBA other 6 1 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA -MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_8RCR7Y4B 5.24330825476658 -0.310941664883321 NA NA differentially expressed no change NA NA 8:74612940 8:74500513 ARRIBA other 2 0 medium [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA -MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_C7N3J4NW 0.867125415388769 -0.0983291810331555 NA NA no change no change NA NA 8:74612940 8:74500513 ARRIBA other 3 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA -MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_HCP5C912 1.05410809937805 0.459828061844071 NA NA no change no change NA NA 8:74612940 8:74500513 ARRIBA other 4 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA -MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_JXNZYGCR 2.4909900543695 -0.24135319885612 NA NA differentially expressed no change NA NA 8:74612940 8:74500513 ARRIBA other 4 0 medium [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA -MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_K5802F84 5.24330825476658 -0.292114832623813 NA NA differentially expressed no change NA NA 8:74612940 8:74500513 ARRIBA other 3 0 medium [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA -MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_KPT2WPHW 2.4909900543695 0.243800656377736 NA NA differentially expressed no change NA NA 8:74612940 8:74500513 ARRIBA other 3 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA -MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_M4NVX721 0.29560937995086 0.477322267617876 NA NA no change no change NA NA 8:74612940 8:74500513 ARRIBA other 3 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA -MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_QF5VVZX5 5.84004179202209 0.507339977348588 NA NA differentially expressed no change NA NA 8:74612940 8:74500513 ARRIBA other 3 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA -MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_WCRKYV0T 3.00462451673521 1.06426188943022 NA NA differentially expressed no change NA NA 8:74612940 8:74500513 ARRIBA other 6 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA -MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_ZH1FBX50 5.84004179202209 0.602925202539384 NA NA differentially expressed no change NA NA 8:74612940 8:74500513 ARRIBA other 3 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA -MIR3141(86965)/MIR1303(2739)--VCAN BS_P0QF87WC NA 4.41483274270451 NA NA NA differentially expressed NA NA 5:154683037 5:83490098 ARRIBA other 3 0 medium [],duplication MIR3141 MIR1303 VCAN NA NA Oncogene NA NA NA -MIR4300HG--AP003398.1(295335)/MTND4LP18(299257) BS_0T17SY47 NA NA NA NA NA NA NA NA 11:82099974 11:81252969 ARRIBA other 3 0 medium [],deletion MIR4300HG NA AP003398.1 MTND4LP18 NA NA NA NA NA -MIR4435-2HG--AC083899.1 BS_RR12T74P 2.94087817367985 4.00511140536669 NA NA differentially expressed differentially expressed NA NA 2:111344061 2:87125198 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr2:24.00Mb]],inversion MIR4435-2HG NA AC083899.1 NA NA NA NA NA NA -MIR4537(1761)/IGHJ6(1884)--CASC11 BS_1607397Q NA 117.005274472846 NA NA NA differentially expressed NA NA 14:105861314 8:127733959 ARRIBA other 124 5 high [],translocation MIR4537 IGHJ6 CASC11 NA NA NA NA NA NA -MIR6744--AC139749.1 BS_MX23ZY0Y NA NA NA NA NA NA NA NA 11:1256609 11:1054239 ARRIBA other 2 2 medium [INTRACHROMOSOMAL[chr11:0.20Mb]],inversion/3'-3' MIR6744 NA AC139749.1 NA NA NA NA NA NA -MIR7641-1(168718)/LINC02552(24499)--AP002004.2 BS_8NY9J9NQ NA NA NA NA NA NA NA NA 11:104421369 11:104873256 ARRIBA other 3 1 medium [],deletion MIR7641-1 LINC02552 AP002004.2 NA NA NA NA NA NA -MIR7641-1(168718)/LINC02552(24499)--AP002004.2 BS_KF0ZXDER NA NA NA NA NA NA NA NA 11:104421369 11:104873256 ARRIBA other 2 1 medium [],deletion MIR7641-1 LINC02552 AP002004.2 NA NA NA NA NA NA -MIR99AHG--AC245297.1 BS_C6ZZ3FY5 2.24608155253033 NA NA NA differentially expressed NA NA NA 21:16231115 1:149201090 ARRIBA other 23 3 high [INTERCHROMOSOMAL[chr21--chr1]],translocation MIR99AHG NA AC245297.1 NA NA NA NA NA NA -MIR99AHG--AC245297.1 BS_C6ZZ3FY5 2.24608155253033 NA NA NA differentially expressed NA NA NA 21:16181687 1:149201090 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr21--chr1]],translocation MIR99AHG NA AC245297.1 NA NA NA NA NA NA -MIR99AHG--AF246928.1(5265)/AJ009632.2(18497) BS_23QW0BBA 1.86185398700078 NA NA NA no change NA NA NA 21:16487538 21:15352003 ARRIBA other 6 0 high [],duplication MIR99AHG NA AF246928.1 AJ009632.2 NA NA NA NA NA -MIR99AHG(2506)/AP000473.1(924)--AP000473.1 BS_ZV68CES9 5.85979437057159 NA NA NA differentially expressed NA NA NA 21:16629903 21:16630796 ARRIBA other 8 0 medium [],inversion MIR99AHG AP000473.1 AP000473.1 NA NA NA NA NA NA -MIRLET7BHG--UPK3A BS_QWTE1CWR 3.69700508948335 2.08748555387592 NA NA differentially expressed differentially expressed NA NA 22:46080655 22:45297237 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr22:0.76Mb]],inversion/3'-3' MIRLET7BHG NA UPK3A NA NA NA NA NA NA -MIRLET7BHG--UPK3A(1363)/FAM118A(11731) BS_QWTE1CWR 3.69700508948335 2.08748555387592 NA -1.28151901275615 differentially expressed differentially expressed NA no change 22:46080655 22:45297237 ARRIBA other 72 8 high [],inversion MIRLET7BHG NA UPK3A FAM118A NA NA NA NA NA -MIRLET7BHG--UPK3A(1363)/FAM118A(11731) BS_WKESC3XN 5.16758220121487 -0.558465403581616 NA -0.106448498811491 differentially expressed no change NA no change 22:46080655 22:45297237 ARRIBA other 2 1 high [],inversion MIRLET7BHG NA UPK3A FAM118A NA NA NA NA NA -MKL1--ACO2 BS_49BQS7Z6 0.853867400303679 -0.761701539955673 NA NA no change no change NA NA 22:40463221 22:41499726 ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion MKL1 NA ACO2 NA Oncogene NA NA NA NA -MKL1--ACO2 BS_49BQS7Z6 0.853867400303679 -0.761701539955673 NA NA no change no change NA NA 22:40463221 22:41507791 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion MKL1 NA ACO2 NA Oncogene NA NA NA NA -MKL1--ACO2 BS_49BQS7Z6 0.853867400303679 -0.761701539955673 NA NA no change no change NA NA 22:40552106 22:41499726 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion MKL1 NA ACO2 NA Oncogene NA NA NA NA -MKL1--ACO2 BS_GXTFW99H 1.94372495531633 -1.74488530548868 NA NA no change no change NA NA 22:40463221 22:41499726 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion MKL1 NA ACO2 NA Oncogene NA NA NA NA -MKL1--ACO2 BS_GXTFW99H 1.94372495531633 -1.74488530548868 NA NA no change no change NA NA 22:40463221 22:41507791 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion MKL1 NA ACO2 NA Oncogene NA NA NA NA -MKL1--BPIFC BS_QWTE1CWR 2.8201332001606 0.0507929004411239 NA NA differentially expressed no change NA NA 22:40636478 22:32422126 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr22:7.95Mb]],inversion/5'-5' MKL1 NA BPIFC NA Oncogene NA NA NA NA -MKL1--CACNA1I BS_1D6PZNKN 2.44755578991604 -1.02234535968842 NA NA differentially expressed no change NA NA 22:40636478 22:39619310 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr22:0.72Mb]],inversion MKL1 NA CACNA1I NA Oncogene NA NA NA NA -MKL1--CACNA1I BS_1D6PZNKN 2.44755578991604 -1.02234535968842 NA NA differentially expressed no change NA NA 22:40594674 22:39619310 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr22:0.72Mb]],inversion MKL1 NA CACNA1I NA Oncogene NA NA NA NA -MKL1--FBXO7 BS_QWTE1CWR 2.8201332001606 2.05000359906348 NA NA differentially expressed differentially expressed NA NA 22:40636478 22:32478981 ARRIBA other 15 6 high [INTRACHROMOSOMAL[chr22:7.91Mb]],inversion MKL1 NA FBXO7 NA Oncogene NA NA NA NA -MKL1--FBXO7 BS_QWTE1CWR 2.8201332001606 2.05000359906348 NA NA differentially expressed differentially expressed NA NA 22:40636478 22:32479133 ARRIBA other 8 2 medium [INTRACHROMOSOMAL[chr22:7.91Mb]],inversion MKL1 NA FBXO7 NA Oncogene NA NA NA NA -MKL1--FBXO7 BS_QWTE1CWR 2.8201332001606 2.05000359906348 NA NA differentially expressed differentially expressed NA NA 22:40636478 22:32483897 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr22:7.91Mb]],inversion MKL1 NA FBXO7 NA Oncogene NA NA NA NA -MKL1--FBXO7 BS_QWTE1CWR 2.8201332001606 2.05000359906348 NA NA differentially expressed differentially expressed NA NA 22:40636478 22:32485068 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:7.91Mb]],inversion MKL1 NA FBXO7 NA Oncogene NA NA NA NA -MKL1--LARGE1 BS_QWTE1CWR 2.8201332001606 NA NA NA differentially expressed NA NA NA 22:40552106 22:33597066 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr22:6.49Mb]],inversion/5'-5' MKL1 NA LARGE1 NA Oncogene NA NA NA NA -MKL1--RTCB BS_QWTE1CWR 2.8201332001606 0.506394776120207 NA NA differentially expressed no change NA NA 22:40636478 22:32399635 ARRIBA other 21 0 high [INTRACHROMOSOMAL[chr22:8.00Mb]],inversion/5'-5' MKL1 NA RTCB NA Oncogene NA NA NA NA -MKL1--SEMA5A BS_QWTE1CWR 2.8201332001606 7.84232571880669 NA NA differentially expressed differentially expressed NA NA 22:40632720 5:9244839 ARRIBA other 24 1 medium [INTERCHROMOSOMAL[chr22--chr5]],translocation/5'-5' MKL1 NA SEMA5A NA Oncogene NA NA NA NA -MKLN1--CDK14 BS_QHS3V0GP 3.71276538891591 1.57558609797448 NA NA differentially expressed no change NA NA 7:131466415 7:91045897 ARRIBA frameshift 16 0 high [INTRACHROMOSOMAL[chr7:39.90Mb]],duplication MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion -MKLN1--CDK14 BS_V3Z3DB4N 8.65543782267119 5.4000049894713 NA NA differentially expressed differentially expressed NA NA 7:131466415 7:91045897 ARRIBA frameshift 298 4 high [INTRACHROMOSOMAL[chr7:39.90Mb]],duplication MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion -MKLN1--CDK14 BS_V3Z3DB4N 8.65543782267119 5.4000049894713 NA NA differentially expressed differentially expressed NA NA 7:131414710 7:90726567 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],duplication MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion -MKLN1--CDK14 BS_V3Z3DB4N 8.65543782267119 5.4000049894713 NA NA differentially expressed differentially expressed NA NA 7:131399433 7:90863175 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],duplication MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion -MKLN1--CDK14 BS_V3Z3DB4N 8.65543782267119 5.4000049894713 NA NA differentially expressed differentially expressed NA NA 7:131327997 7:90726567 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],duplication MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion -MKLN1--CDK14 BS_V3Z3DB4N 8.65543782267119 5.4000049894713 NA NA differentially expressed differentially expressed NA NA 7:131414710 7:91045897 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],duplication MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion -MKRN7P--AL031686.1(221)/ZNF334(2678) BS_5PEFNDCY NA NA NA 0.39931525230626 NA NA NA no change 20:46474501 20:46496952 ARRIBA other 3 0 medium [],duplication MKRN7P NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA -MKRN7P--AL031686.1(221)/ZNF334(2678) BS_9V633J1X NA NA NA 2.63298783125202 NA NA NA differentially expressed 20:46474501 20:46496952 ARRIBA other 3 0 high [],duplication MKRN7P NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA -MKRN7P--AL031686.1(221)/ZNF334(2678) BS_G63HYD6N NA NA NA 1.06612476521267 NA NA NA no change 20:46474501 20:46496952 ARRIBA other 3 1 high [],duplication MKRN7P NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA -MKRN7P--AL031686.1(221)/ZNF334(2678) BS_K74PZET7 NA NA NA 1.63059876959438 NA NA NA no change 20:46474501 20:46496952 ARRIBA other 3 0 medium [],duplication MKRN7P NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA -MKRN7P--ZNF334 BS_258RRGDM NA -0.103902394349837 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA -MKRN7P--ZNF334 BS_2ADZNNV4 NA -1.06589508537856 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA -MKRN7P--ZNF334 BS_5PEFNDCY NA 0.39931525230626 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA -MKRN7P--ZNF334 BS_5PEFNDCY NA 0.39931525230626 NA NA NA no change NA NA 20:46474501 20:46506458 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA -MKRN7P--ZNF334 BS_5PEFNDCY NA 0.39931525230626 NA NA NA no change NA NA 20:46474501 20:46503097 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA -MKRN7P--ZNF334 BS_7BTZQKYY NA 0.497189037387677 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA -MKRN7P--ZNF334 BS_G63HYD6N NA 1.06612476521267 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA -MKRN7P--ZNF334 BS_G63HYD6N NA 1.06612476521267 NA NA NA no change NA NA 20:46474501 20:46506458 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA -MKRN7P--ZNF334 BS_QEYPFYHD NA 1.11713193613377 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA -MKRN7P--ZNF334 BS_W41S7B55 NA -0.610524417578614 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA -MKRN7P--ZNF334 BS_W80TJC27 NA 0.53548222856885 NA NA NA no change NA NA 20:46474501 20:46504740 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA -MLIP--RNU6-1023P(46056)/AL512363.1(7570) BS_HZ707C55 2.96462636436556 NA NA NA differentially expressed NA NA NA 6:54202233 6:54832548 ARRIBA frameshift 2 0 medium [],deletion MLIP NA RNU6-1023P AL512363.1 NA NA NA NA NA -MLLT10--AP001267.3 BS_9GJ23RHH 4.66454031762148 NA NA NA differentially expressed NA NA NA 10:21617207 11:118527405 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr10--chr11]],translocation/5'-5' MLLT10 NA AP001267.3 NA CosmicCensus, Oncogene NA NA NA NA -MLLT10--GDAP1 BS_9GJ23RHH 4.66454031762148 -1.67976615816774 NA NA differentially expressed no change NA NA 10:21568484 8:74353254 ARRIBA other 8 1 medium [INTERCHROMOSOMAL[chr10--chr8]],translocation/5'-5' MLLT10 NA GDAP1 NA CosmicCensus, Oncogene NA NA NA NA -MLLT10--JPH1 BS_9GJ23RHH 4.66454031762148 -1.29887364809367 NA NA differentially expressed no change NA NA 10:21538912 8:74315620 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr10--chr8]],translocation MLLT10 NA JPH1 NA CosmicCensus, Oncogene NA NA NA NA -MLLT3--FOCAD BS_1HFK0SXV 2.57461221616495 1.3952552924289 NA NA differentially expressed no change NA NA 9:20620654 9:20778681 ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr9:0.04Mb],LOCAL_INVERSION:-:+:[35766]],inversion MLLT3 NA FOCAD NA CosmicCensus, Oncogene NA NA NA NA -MMP16--AC022690.1(12987)/AC023538.1(99920) BS_HZRM07TW 7.77881498273598 NA NA NA differentially expressed NA NA NA 8:88197158 8:13922767 ARRIBA frameshift 3 0 medium [],deletion MMP16 NA AC022690.1 AC023538.1 NA NA NA NA NA -MMP16--AC022690.2(43840)/AC022690.1(16282) BS_HZRM07TW 7.77881498273598 NA NA NA differentially expressed NA NA NA 8:88197158 8:13892949 ARRIBA frameshift 3 0 medium [],deletion MMP16 NA AC022690.2 AC022690.1 NA NA NA NA NA -MMP16--AC022880.1(91683)/AC022690.2(9637) BS_HZRM07TW 7.77881498273598 NA NA NA differentially expressed NA NA NA 8:88197158 8:13834464 ARRIBA frameshift 9 1 high [],deletion MMP16 NA AC022880.1 AC022690.2 NA NA NA NA NA -MMP16--CNBD1 BS_W9N9844Q 11.2817703510469 0.250297252609979 NA NA differentially expressed no change NA NA 8:88197158 8:87459351 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr8:0.42Mb]],deletion/5'-5' MMP16 NA CNBD1 NA NA CosmicCensus NA NA NA -MMP16--IGLV8OR8-1(41394)/SPIDR(16284) BS_HZRM07TW 7.77881498273598 72.017031912416 NA -1.96408488925706 differentially expressed differentially expressed NA no change 8:88197158 8:47244291 ARRIBA frameshift 7 0 high [],deletion MMP16 NA IGLV8OR8-1 SPIDR NA NA NA NA NA -MMP16--MMP16 BS_C7N3J4NW 5.05733584033507 5.05733584033507 NA NA differentially expressed differentially expressed NA NA 8:88056128 8:88167973 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.30Mb]],duplication/non-canonical_splicing MMP16 NA MMP16 NA NA NA NA NA NA -MMP16--MMP16 BS_HCP5C912 5.86841377571997 5.86841377571997 NA NA differentially expressed differentially expressed NA NA 8:88056128 8:88167973 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.30Mb]],duplication/non-canonical_splicing MMP16 NA MMP16 NA NA NA NA NA NA -MMP16--MMP16 BS_WCRKYV0T 4.81730456234019 4.81730456234019 NA NA differentially expressed differentially expressed NA NA 8:88056128 8:88167973 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.30Mb]],duplication/non-canonical_splicing MMP16 NA MMP16 NA NA NA NA NA NA -MMP16--MMP16 BS_ZR96A4FH 7.05228081426538 7.05228081426538 NA NA differentially expressed differentially expressed NA NA 8:88056128 8:88167973 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.30Mb]],duplication/non-canonical_splicing MMP16 NA MMP16 NA NA NA NA NA NA -MN1--AC008667.1 BS_KSKZ9J7J 2.91046922078752 NA NA NA differentially expressed NA NA NA 22:27796763 5:139721903 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr22--chr5]],translocation MN1 NA AC008667.1 NA CosmicCensus, Oncogene NA NA NA NA -MN1--CXXC5 BS_KSKZ9J7J 2.91046922078752 0.838702848899986 NA NA differentially expressed no change NA NA 22:27796763 5:139681203 ARRIBA in-frame 78 15 high [INTERCHROMOSOMAL[chr22--chr5]],translocation MN1 NA CXXC5 NA CosmicCensus, Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA -MN1--CXXC5 BS_KSKZ9J7J 2.91046922078752 0.838702848899986 NA NA differentially expressed no change NA NA 22:27796763 5:139682863 ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr22--chr5]],translocation MN1 NA CXXC5 NA CosmicCensus, Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA -MN1--PATZ1 BS_49BQS7Z6 2.98989536306761 2.87742570123607 NA NA differentially expressed differentially expressed NA NA 22:27761050 22:31344642 ARRIBA other 1 9 medium [CCLE,INTRACHROMOSOMAL[chr22:3.52Mb]],duplication MN1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -MN1--PATZ1 BS_ZVZDDW2G 2.55421986321191 4.10800824578231 NA NA differentially expressed differentially expressed NA NA 22:27789639 22:31344723 ARRIBA in-frame 109 17 high [CCLE,INTRACHROMOSOMAL[chr22:3.52Mb]],duplication MN1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -MN1--PATZ1 BS_ZVZDDW2G 2.55421986321191 4.10800824578231 NA NA differentially expressed differentially expressed NA NA 22:27796763 22:31335863 ARRIBA frameshift 1 0 low [CCLE,INTRACHROMOSOMAL[chr22:3.52Mb]],duplication MN1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -MN1--PSD2 BS_KSKZ9J7J 2.91046922078752 -1.59352601761741 NA NA differentially expressed no change NA NA 22:27796763 5:139809391 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr22--chr5]],translocation MN1 NA PSD2 NA CosmicCensus, Oncogene NA NA NA NA -MNS1--MNS1(1151)/AC090518.1(76664) BS_61E80SD6 0.771953482191289 0.771953482191289 NA NA no change no change NA NA 15:56429086 15:56466288 ARRIBA frameshift 4 1 high [],duplication MNS1 NA MNS1 AC090518.1 NA NA NA NA NA -MNS1--MNS1(1151)/AC090518.1(76664) BS_CQSAJ7BF -0.46645178168645 -0.46645178168645 NA NA no change no change NA NA 15:56429086 15:56466288 ARRIBA frameshift 3 0 high [],duplication MNS1 NA MNS1 AC090518.1 NA NA NA NA NA -MNS1--MNS1(1151)/AC090518.1(76664) BS_M4NVX721 -0.328607827252703 -0.328607827252703 NA NA no change no change NA NA 15:56429086 15:56466288 ARRIBA frameshift 3 0 high [],duplication MNS1 NA MNS1 AC090518.1 NA NA NA NA NA -MNT--PRKDC BS_PNYN0AYD 1.01532008258545 2.64294474978706 NA NA no change differentially expressed NA NA 17:2400640 8:47778434 ARRIBA in-frame 32 0 high [INTERCHROMOSOMAL[chr17--chr8]],translocation/5'-5' MNT NA PRKDC NA TumorSuppressorGene, TranscriptionFactor Kinase NA NA NA -MNT--PRKDC BS_R5SNFB5B 0.233226868240074 2.85873565111628 NA NA no change differentially expressed NA NA 17:2400640 8:47778434 ARRIBA frameshift 11 2 high [INTERCHROMOSOMAL[chr17--chr8]],translocation/5'-5' MNT NA PRKDC NA TumorSuppressorGene, TranscriptionFactor Kinase NA NA NA -MOAP1--AL133355.1(2611)/STN1(170) BS_E3BAT4C1 -0.678970979121607 NA NA NA no change NA NA NA 14:93182792 10:103882372 ARRIBA frameshift 18 3 medium [],translocation MOAP1 NA AL133355.1 STN1 NA NA NA NA NA -MOB2(44927)/DUSP8(7870)--NUP98 BS_4QW2S1Q8 -2.13962961299333 0.991508757206233 -2.3288908485663 NA differentially expressed no change differentially expressed NA 11:1546174 11:3735324 ARRIBA other 5 0 medium [],inversion MOB2 DUSP8 NUP98 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -MOB2(44927)/DUSP8(7870)--NUP98 BS_MX23ZY0Y -2.03697970583562 1.75850803699294 -1.56279623724074 NA differentially expressed no change no change NA 11:1546174 11:3735324 ARRIBA other 3 0 high [],inversion MOB2 DUSP8 NUP98 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -MON1B--AC106733.1(67694)/MON1B(17844) BS_AM70R8RG 2.2238130350541 NA NA 2.2238130350541 differentially expressed NA NA differentially expressed 16:77191633 16:77172991 ARRIBA frameshift 8 0 high [],duplication MON1B NA AC106733.1 MON1B NA NA NA NA NA -MOSPD2--AC073529.1 BS_V96WVE3Z -0.268535361400606 NA NA NA no change NA NA NA X:14873758 X:11013747 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chrX:3.76Mb]],duplication/5'-5' MOSPD2 NA AC073529.1 NA NA NA NA NA NA -MOSPD2--CABIN1 BS_EJ9JKM1C -1.4678547585844 -1.64525833483471 NA NA no change no change NA NA X:14897238 22:24054873 ARRIBA frameshift 6 1 high [INTERCHROMOSOMAL[chrX--chr22]],translocation MOSPD2 NA CABIN1 NA NA NA NA NA NA -MOSPD2--CABIN1 BS_YB07VF1X -0.333969782104127 -0.883180709390262 NA NA no change no change NA NA X:14897238 22:24054873 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chrX--chr22]],translocation MOSPD2 NA CABIN1 NA NA NA NA NA NA -MOSPD2--CABIN1 BS_YB07VF1X -0.333969782104127 -0.883180709390262 NA NA no change no change NA NA X:14900635 22:24054873 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chrX--chr22]],translocation MOSPD2 NA CABIN1 NA NA NA NA NA NA -MPC2--FALEC(17936)/AL356356.1(12594) BS_KE56MMY0 -0.325368035575433 0.0312057666562982 NA NA no change no change NA NA 1:167935733 1:150535968 ARRIBA frameshift 3 0 medium [],deletion MPC2 NA FALEC AL356356.1 NA NA NA NA NA -MPDZ--IZUMO3 BS_BKQZ550R 0.799113001161327 60.5043258681461 NA NA no change differentially expressed NA NA 9:13147548 9:24545061 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr9:11.26Mb]],duplication MPDZ NA IZUMO3 NA NA NA NA NA NA -MPDZ--MPDZ BS_7G42J2SK 2.7703376013659 2.7703376013659 NA NA differentially expressed differentially expressed NA NA 9:13126516 9:13190299 ARRIBA in-frame 14 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.17Mb]],duplication/non-canonical_splicing MPDZ NA MPDZ NA NA NA NA NA NA -MPP3--AL020998.1 BS_7FWZ518S 1.13082287220297 NA NA NA no change NA NA NA 17:43831244 1:20302064 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr17--chr1]],translocation/5'-5' MPP3 NA AL020998.1 NA NA NA NA NA NA -MPP3--VWA5B1 BS_7FWZ518S 1.13082287220297 0.77577602289844 NA NA no change no change NA NA 17:43831244 1:20302064 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr17--chr1]],translocation MPP3 NA VWA5B1 NA NA NA NA NA NA -MPP6--AC073316.3 BS_70FFPA51 3.30206803679855 NA NA NA differentially expressed NA NA NA 7:24573593 7:3264789 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:21.27Mb]],inversion MPP6 NA AC073316.3 NA NA NA NA NA NA -MPRIP--ALDH3A1 BS_FCAKKZ20 2.61873308578041 0.295644664876258 NA NA differentially expressed no change NA NA 17:17075787 17:19745134 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr17:2.52Mb]],inversion MPRIP NA ALDH3A1 NA NA NA NA NA NA -MPRIP--PRPSAP2 BS_VXHWZJDC -0.575697059031921 -0.100038718604507 NA NA no change no change NA NA 17:17078076 17:18889822 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr17:1.62Mb]],deletion MPRIP NA PRPSAP2 NA NA NA NA NA NA -MPZL1--RABGAP1L BS_W60RQAKK 2.83881409649482 0.296532351279467 NA NA differentially expressed no change NA NA 1:167776249 1:174225948 ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:6.37Mb]],inversion/3'-3' MPZL1 NA RABGAP1L NA NA Oncogene NA NA NA -MRE11--AP001804.1 BS_5PJCHF6V NA NA NA NA NA NA NA NA 11:94485924 11:124325803 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr11:29.83Mb]],duplication MRE11 NA AP001804.1 NA Oncogene NA NA NA NA -MROH1--RNU6-1172P(2065)/SDC2(60126) BS_HE57E1RP -0.202776760503098 NA NA 2.94785443579622 no change NA NA differentially expressed 8:144250366 8:96433225 ARRIBA frameshift 3 0 medium [],duplication MROH1 NA RNU6-1172P SDC2 NA NA NA NA NA -MRPL21--AP003028.1(43675)/TUBB4BP4(93762) BS_23QW0BBA -1.52072932888927 NA NA -0.0394840133446097 no change NA NA no change 11:68903723 11:91855969 ARRIBA frameshift 3 0 medium [],inversion MRPL21 NA AP003028.1 TUBB4BP4 NA NA NA NA NA -MRPL21--SHANK2 BS_TRKH2SPE 3.71453438566222 3.43572190679227 NA NA differentially expressed differentially expressed NA NA 11:68892890 11:70896567 ARRIBA frameshift 2 0 medium [ChimerSeq,INTRACHROMOSOMAL[chr11:1.56Mb]],duplication MRPL21 NA SHANK2 NA NA NA NA NA TCGAFusion -MRPL30--C2orf15 BS_3MYEMXPQ 1.47128062785798 2.55082232953595 NA NA no change differentially expressed NA NA 2:99181249 2:99142285 ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr2:0.03Mb],LOCAL_REARRANGEMENT:+:[29592]],duplication MRPL30 NA C2orf15 NA NA NA NA NA NA -MRPL40--FFAR3 BS_QWTE1CWR 0.0167624033591169 7.26387124631446 NA NA no change differentially expressed NA NA 22:19435946 19:35358858 ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr22--chr19]],translocation MRPL40 NA FFAR3 NA NA NA NA NA NA -MRPL48--KMT5B BS_0WQJP6ZG -1.56170713775692 NA NA NA no change NA NA NA 11:73787992 11:68190152 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr11:5.57Mb]],inversion MRPL48 NA KMT5B NA NA NA NA NA NA -MRPL48--KMT5B BS_0WQJP6ZG -1.56170713775692 NA NA NA no change NA NA NA 11:73787992 11:68185928 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:5.57Mb]],inversion MRPL48 NA KMT5B NA NA NA NA NA NA -MRPS16--CFAP70 BS_MF9X3PKH 2.96851250092584 0.0108739970218447 NA NA differentially expressed no change NA NA 10:73250923 10:73256415 ARRIBA in-frame 20 0 high [FA_CancerSupp,INTRACHROMOSOMAL[chr10:0.00Mb],LOCAL_REARRANGEMENT:-:[1066]],duplication MRPS16 NA CFAP70 NA NA NA NA NA NA -MRPS16--CFAP70 BS_MF9X3PKH 2.96851250092584 0.0108739970218447 NA NA differentially expressed no change NA NA 10:73251763 10:73256416 ARRIBA frameshift 16 0 high [FA_CancerSupp,INTRACHROMOSOMAL[chr10:0.00Mb],LOCAL_REARRANGEMENT:-:[1066]],duplication MRPS16 NA CFAP70 NA NA NA NA NA NA -MRPS16--CFAP70 BS_MF9X3PKH 2.96851250092584 0.0108739970218447 NA NA differentially expressed no change NA NA 10:73251763 10:73254055 ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr10:0.00Mb],LOCAL_REARRANGEMENT:-:[1066]],duplication MRPS16 NA CFAP70 NA NA NA NA NA NA -MRPS16--CFAP70 BS_X67GTEM6 2.38714233701807 1.42929920936987 NA NA differentially expressed no change NA NA 10:73250815 10:73256416 ARRIBA frameshift 11 3 high [FA_CancerSupp,INTRACHROMOSOMAL[chr10:0.00Mb],LOCAL_REARRANGEMENT:-:[1066]],duplication MRPS16 NA CFAP70 NA NA NA NA NA NA -MRPS16--CFAP70 BS_X67GTEM6 2.38714233701807 1.42929920936987 NA NA differentially expressed no change NA NA 10:73251763 10:73256416 ARRIBA frameshift 12 1 high [FA_CancerSupp,INTRACHROMOSOMAL[chr10:0.00Mb],LOCAL_REARRANGEMENT:-:[1066]],duplication MRPS16 NA CFAP70 NA NA NA NA NA NA -MRPS21P6(36476)/RPS27P18(270273)--POLR3A BS_84XCR9GG 2.60459932153564 0.840846976821503 -0.0294627825494395 NA differentially expressed no change no change NA 10:125203413 10:77985307 ARRIBA other 2 0 low [],inversion MRPS21P6 RPS27P18 POLR3A NA NA NA NA NA NA -MRPS6--MIR99AHG BS_Z8F3GM85 -1.25910286233458 0.306522241932972 NA NA no change no change NA NA 21:34073745 21:16181591 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr21:17.45Mb]],duplication MRPS6 NA MIR99AHG NA NA NA NA NA NA -MRPS6--MIR99AHG BS_Z8F3GM85 -1.25910286233458 0.306522241932972 NA NA no change no change NA NA 21:34073745 21:16231056 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr21:17.45Mb]],duplication MRPS6 NA MIR99AHG NA NA NA NA NA NA -MSANTD3--LINC01451 BS_QV51J756 0.0487289035498615 28.1384560532188 NA NA no change differentially expressed NA NA 9:100427393 9:136617740 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr9:36.16Mb]],inversion MSANTD3 NA LINC01451 NA TranscriptionFactor NA NA NA NA -MSANTD3--LINC01451(23009)/HSPC324(8420) BS_QV51J756 0.0487289035498615 28.1384560532188 NA NA no change differentially expressed NA NA 9:100435820 9:136640190 ARRIBA other 2 1 medium [],inversion MSANTD3 NA LINC01451 HSPC324 TranscriptionFactor NA NA NA NA -MSANTD3-TMEFF1--PLPP7(60243)/PRRC2B(24588) BS_A0DYVX9J 2.69846603993144 NA NA 5.11313374374537 differentially expressed NA NA differentially expressed 9:100550160 9:131369505 ARRIBA frameshift 3 1 high [],deletion MSANTD3-TMEFF1 NA PLPP7 PRRC2B NA NA NA NA NA -MSANTD3-TMEFF1--PRRC2B BS_A0DYVX9J 2.69846603993144 5.11313374374537 NA NA differentially expressed differentially expressed NA NA 9:100550160 9:131430090 ARRIBA frameshift 126 23 high [INTRACHROMOSOMAL[chr9:30.82Mb]],deletion MSANTD3-TMEFF1 NA PRRC2B NA NA NA NA NA NA -MSANTD3-TMEFF1--PRRC2B BS_A0DYVX9J 2.69846603993144 5.11313374374537 NA NA differentially expressed differentially expressed NA NA 9:100550160 9:131432617 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr9:30.82Mb]],deletion MSANTD3-TMEFF1 NA PRRC2B NA NA NA NA NA NA -MSANTD3-TMEFF1--PRRC2B BS_A0DYVX9J 2.69846603993144 5.11313374374537 NA NA differentially expressed differentially expressed NA NA 9:100509134 9:131432617 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:30.82Mb]],deletion MSANTD3-TMEFF1 NA PRRC2B NA NA NA NA NA NA -MSC-AS1--AC090987.1 BS_WMEHNDSK 3.12735859417275 NA NA NA differentially expressed NA NA NA 8:71844422 8:130655695 ARRIBA other 6 2 high [INTRACHROMOSOMAL[chr8:58.48Mb]],inversion MSC-AS1 NA AC090987.1 NA NA NA NA NA NA -MSC-AS1--AC090987.1 BS_WMEHNDSK 3.12735859417275 NA NA NA differentially expressed NA NA NA 8:71844422 8:130599071 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr8:58.48Mb]],inversion MSC-AS1 NA AC090987.1 NA NA NA NA NA NA -MSH3--MSH3 BS_1EBQ3T20 6.30572119148074 6.30572119148074 NA NA differentially expressed differentially expressed NA NA 5:80679093 5:80656411 ARRIBA frameshift 30 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.22Mb]],duplication/non-canonical_splicing MSH3 NA MSH3 NA Oncogene Oncogene NA NA NA -MSH3--MSH3 BS_8ZD6J47V 3.7505171813649 3.7505171813649 NA NA differentially expressed differentially expressed NA NA 5:80679093 5:80656411 ARRIBA frameshift 11 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.22Mb]],duplication/non-canonical_splicing MSH3 NA MSH3 NA Oncogene Oncogene NA NA NA -MSI2--RNF213 BS_QYPHA40N 2.81506472364979 3.40025014431807 NA NA differentially expressed differentially expressed NA NA 17:57529724 17:80306252 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:22.58Mb]],deletion MSI2 NA RNF213 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -MSL2--AC128689.1(118215)/AC092989.1(367788) BS_TW8DQH8J 4.79372016497935 NA NA NA differentially expressed NA NA NA 3:136194972 3:135558103 ARRIBA frameshift 2 1 high [],deletion MSL2 NA AC128689.1 AC092989.1 NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_063ERW0R -1.22435553389578 -0.10209087352342 10.4159074151829 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 2 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_13CGKADW -1.14615723282948 1.12009241899804 10.8022124846132 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 4 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_1G3WYEN3 -0.861008462417141 1.74661477191371 -0.162236315085263 NA no change no change no change NA X:11878018 X:12498680 ARRIBA other 4 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_27QE6BV7 -1.08699812711404 1.79054435972073 8.96745159332511 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 3 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_2AR3AP0N -1.03193981744176 1.1658997234266 12.1442486075471 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 6 0 medium [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_470DYRJQ -1.35422492780026 0.703206866451558 11.6622590587484 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 4 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_5PEFNDCY -1.06207036204124 -0.454934996855603 10.8767004405276 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 5 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_7FWZ518S -1.44581998271758 0.994691282178653 11.7222125018672 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 2 0 medium [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_90B22NGP -2.02697787903769 2.45617247305927 11.6045984086627 NA differentially expressed differentially expressed differentially expressed NA X:11878018 X:12498680 ARRIBA other 7 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_92VDQ0NE -1.14330786854524 1.92337433190523 10.4784344405733 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 4 0 medium [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_AJ6X83G5 -0.469314916294908 3.89039672258548 -0.162236315085263 NA no change differentially expressed no change NA X:11878018 X:12498680 ARRIBA other 3 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_AWH9757B -1.12910999603899 1.47788355557218 11.7030538182162 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 2 0 medium [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_DMZP9G1H -0.972756239473093 2.94800460098172 8.78213126064624 NA no change differentially expressed differentially expressed NA X:11878018 X:12498680 ARRIBA other 4 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_DV86M0Y7 -1.15758757362147 -0.195460558415251 12.5010247106769 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 3 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_DVCQ8XDZ -0.371477301817553 3.03389604788668 8.42138138870688 NA no change differentially expressed differentially expressed NA X:11878018 X:12498680 ARRIBA other 3 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_ET8CJXSF -1.90010103255254 0.378458557630205 10.1657595421503 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 3 0 medium [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_FEPRNEXX -1.5509825904465 0.950684604558676 -0.162236315085263 NA no change no change no change NA X:11878018 X:12498680 ARRIBA other 3 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_G9XE3N9T -1.38542838777044 0.604704023399173 -0.162236315085263 NA no change no change no change NA X:11878018 X:12498680 ARRIBA other 2 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_HCP5C912 -1.06482776018014 2.10879340173624 10.0646689531221 NA no change differentially expressed differentially expressed NA X:11878018 X:12498680 ARRIBA other 7 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_J71N7D09 -1.0210734755835 0.591968109786944 9.51620016310833 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 6 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_K5802F84 -1.02650068908359 1.74449349138832 10.7578798488439 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 5 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_KPT2WPHW -1.3326140072182 2.8767835985955 9.3666662909769 NA no change differentially expressed differentially expressed NA X:11878018 X:12498680 ARRIBA other 3 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_KZPR01BD -1.12628015909848 1.89842203803568 -0.162236315085263 NA no change no change no change NA X:11878018 X:12498680 ARRIBA other 3 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_M1PVEHCM -0.0401290334284375 2.77070873112503 -0.162236315085263 NA no change differentially expressed no change NA X:11878018 X:12498680 ARRIBA other 3 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_M4NVX721 -1.06758823062958 2.14250584251069 9.08997550267132 NA no change differentially expressed differentially expressed NA X:11878018 X:12498680 ARRIBA other 8 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_MF47B9ZW -1.16045341774908 3.16931631181788 -0.162236315085263 NA no change differentially expressed no change NA X:11878018 X:12498680 ARRIBA other 2 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_N6NE6B3W -1.40750702377089 1.62113654528136 8.83133639978758 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 18 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_NFRXNAFE -0.386118673094747 3.31184730892737 11.7556609802773 NA no change differentially expressed differentially expressed NA X:11878018 X:12498680 ARRIBA other 2 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_NVKGSMXS -0.59160416974224 3.54402166475392 -0.162236315085263 NA no change differentially expressed no change NA X:11878018 X:12498680 ARRIBA other 5 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_NYS8TRCB -1.50772052997617 0.373602348727821 -0.162236315085263 NA no change no change no change NA X:11878018 X:12498680 ARRIBA other 2 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_PKW05VZV -0.999482733520813 1.1838731388957 -0.162236315085263 NA no change no change no change NA X:11878018 X:12498680 ARRIBA other 2 0 medium [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_QC3XCE6X -1.01025458515087 2.17390830643258 11.935515193166 NA no change differentially expressed differentially expressed NA X:11878018 X:12498680 ARRIBA other 3 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_QV51J756 -0.956857648196046 2.72910809818142 10.5191538080525 NA no change differentially expressed differentially expressed NA X:11878018 X:12498680 ARRIBA other 7 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_SDA4RMMG -1.69259381662323 0.7772291689313 9.38789198951542 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 4 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_SFKZSJN1 -0.830702005343096 0.723009952757062 11.9369676235466 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 4 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_T2QPMZCM -1.46844591140509 0.90547465219578 -0.162236315085263 NA no change no change no change NA X:11878018 X:12498680 ARRIBA other 2 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_VMMJYN8Z -1.05107135630871 2.02675411436885 12.1687686823803 NA no change differentially expressed differentially expressed NA X:11878018 X:12498680 ARRIBA other 3 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_WCRKYV0T -0.756519158933902 3.43468143225022 10.6621294266357 NA no change differentially expressed differentially expressed NA X:11878018 X:12498680 ARRIBA other 4 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_X0F9AYEC -1.52427050449151 0.901945220881904 -0.162236315085263 NA no change no change no change NA X:11878018 X:12498680 ARRIBA other 2 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_Y7F9E2E9 -1.62596146720416 -0.18861360062886 -0.162236315085263 NA no change no change no change NA X:11878018 X:12498680 ARRIBA other 2 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_YEQVW4ND -0.956857648196046 1.22506660588609 7.33319054708935 NA no change no change differentially expressed NA X:11878018 X:12498680 ARRIBA other 2 0 medium [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_ZR96A4FH -1.45226347652402 2.1223609686677 8.84038905760521 NA no change differentially expressed differentially expressed NA X:11878018 X:12498680 ARRIBA other 5 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MSRA--TTC3 BS_KYF0Q0E7 1.63466626256469 2.4887953464267 NA NA no change differentially expressed NA NA 8:10096318 21:37087247 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr8--chr21]],translocation MSRA NA TTC3 NA NA NA NA NA NA -MSRA--WWP1 BS_HZRM07TW -0.619883234202468 -0.47655663998608 NA NA no change no change NA NA 8:10245223 8:86398342 ARRIBA in-frame 6 3 high [INTRACHROMOSOMAL[chr8:75.91Mb]],deletion MSRA NA WWP1 NA NA Oncogene NA NA NA -MSRA--WWP1 BS_HZRM07TW -0.619883234202468 -0.47655663998608 NA NA no change no change NA NA 8:10245223 8:86402019 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr8:75.91Mb]],deletion MSRA NA WWP1 NA NA Oncogene NA NA NA -MSRB1--RHBDL1 BS_YBJBSRHV -1.97679149125486 -1.95874455334563 NA NA no change no change NA NA 16:1941118 16:677098 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr16:1.26Mb]],inversion MSRB1 NA RHBDL1 NA NA NA NA NA NA -MTA3--KIDINS220 BS_RRAEQZ97 0.179476922877206 1.50804429725671 NA NA no change no change NA NA 2:42579200 2:8736999 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr2:33.66Mb]],inversion MTA3 NA KIDINS220 NA Oncogene NA NA NA NA -MTA3--MTA3 BS_1EBQ3T20 0.198737135796564 0.198737135796564 NA NA no change no change NA NA 2:42723035 2:42570437 ARRIBA frameshift 3 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.26Mb]],duplication/non-canonical_splicing MTA3 NA MTA3 NA Oncogene Oncogene NA NA NA -MTAP--AC092506.1(479846)/CDK4P1(727470) BS_3Y0QXZQB 4.84204044953271 NA NA NA differentially expressed NA NA NA 9:21838010 1:104706524 ARRIBA frameshift 2 0 high [],translocation MTAP NA AC092506.1 CDK4P1 TumorSuppressorGene NA NA NA NA -MTAP--AL354994.1 BS_7XRN3CFX 4.36934563655736 NA NA NA differentially expressed NA NA NA 9:21838010 13:86165885 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr9--chr13]],translocation/5'-5' MTAP NA AL354994.1 NA TumorSuppressorGene NA NA NA NA -MTAP--AL445487.1(20628)/RAD23B(91361) BS_FYRDYBMZ 0.3603976901359 NA NA 1.02394024025455 no change NA NA no change 9:21818202 9:107191776 ARRIBA frameshift 2 0 medium [],inversion MTAP NA AL445487.1 RAD23B TumorSuppressorGene NA NA TumorSuppressorGene, Oncogene NA -MTCH2--LINC02484 BS_P9JP6JFA 2.32445988983388 NA NA NA differentially expressed NA NA NA 11:47638699 4:34259226 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr11--chr4]],translocation MTCH2 NA LINC02484 NA NA NA NA NA NA -MTG1--AL513174.1 BS_MX23ZY0Y 0.765161141650575 NA NA NA no change NA NA NA 10:133402773 10:80233664 ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr10:53.15Mb]],duplication MTG1 NA AL513174.1 NA NA NA NA NA NA -MTG1--AL513174.1 BS_P9JP6JFA 0.143120962304416 NA NA NA no change NA NA NA 10:133402773 10:80233664 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr10:53.15Mb]],duplication MTG1 NA AL513174.1 NA NA NA NA NA NA -MTHFD1L--PLEKHG1 BS_V9HVBBDW -0.013605180296277 -0.303490603021967 NA NA no change no change NA NA 6:150877826 6:150830582 ARRIBA in-frame 4 0 medium [ChimerSeq,INTRACHROMOSOMAL[chr6:0.02Mb],LOCAL_REARRANGEMENT:+:[21884]],duplication MTHFD1L NA PLEKHG1 NA NA NA NA NA NA -MTHFS--ST20 BS_TYKJ8G2G -2.07706230562994 -3.21673447443153 NA NA differentially expressed differentially expressed NA NA 15:79889093 15:79907684 ARRIBA in-frame 2 0 low [GTEx,INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_REARRANGEMENT:-:[1461]],duplication MTHFS NA ST20 NA NA TumorSuppressorGene NA NA NA -MTHFS--ST20 BS_X59HSFGG 0.511511341851313 0.315265973588867 NA NA no change no change NA NA 15:79889093 15:79907684 ARRIBA in-frame 2 0 low [GTEx,INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_REARRANGEMENT:-:[1461]],duplication MTHFS NA ST20 NA NA TumorSuppressorGene NA NA NA -MTMR2--LRCH1 BS_C7N3J4NW -0.328030986801192 -0.137461597381692 NA NA no change no change NA NA 11:95924100 13:46720560 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr11--chr13]],translocation/3'-3' MTMR2 NA LRCH1 NA NA NA NA NA NA -MTMR3--PDE7B BS_MN5XVP5A 0.936837325040085 1.70410708102433 NA NA no change no change NA NA 22:29883359 6:135936707 ARRIBA other 4 0 high [INTERCHROMOSOMAL[chr22--chr6]],translocation/5'-5' MTMR3 NA PDE7B NA Oncogene NA NA NA NA -MTMR3--TRMT11 BS_MN5XVP5A 0.936837325040085 -1.78560875246957 NA NA no change no change NA NA 22:29979052 6:126008392 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr22--chr6]],translocation MTMR3 NA TRMT11 NA Oncogene NA NA NA NA -MTMR7--MTMR7 BS_0T17SY47 1.45936571209154 1.45936571209154 NA NA no change no change NA NA 8:17341363 8:17373240 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA -MTMR7--MTMR7 BS_1T19NFJ8 1.67600587837634 1.67600587837634 NA NA no change no change NA NA 8:17341363 8:17373240 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA -MTMR7--MTMR7 BS_2XD3MNKD 2.2978130254278 2.2978130254278 NA NA differentially expressed differentially expressed NA NA 8:17341363 8:17373240 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA -MTMR7--MTMR7 BS_3P20Q2C3 1.8005652551338 1.8005652551338 NA NA no change no change NA NA 8:17341363 8:17373240 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA -MTMR7--MTMR7 BS_6MY8W3H0 1.6189043704679 1.6189043704679 NA NA no change no change NA NA 8:17341363 8:17373240 ARRIBA in-frame 7 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA -MTMR7--MTMR7 BS_F5BZSF3Q -1.60807437563764 -1.60807437563764 NA NA no change no change NA NA 8:17341363 8:17373240 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA -MTMR7--MTMR7 BS_GCA4GET3 1.0083323413849 1.0083323413849 NA NA no change no change NA NA 8:17341363 8:17373240 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA -MTMR7--MTMR7 BS_HCP5C912 1.26923661969011 1.26923661969011 NA NA no change no change NA NA 8:17331150 8:17361274 ARRIBA in-frame 6 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA -MTMR7--MTMR7 BS_M4NVX721 0.41671686534324 0.41671686534324 NA NA no change no change NA NA 8:17331150 8:17373240 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA -MTMR7--MTMR7 BS_N6NE6B3W 1.66362309187908 1.66362309187908 NA NA no change no change NA NA 8:17341363 8:17373240 ARRIBA in-frame 10 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA -MTMR7--MTMR7 BS_TDEFAPNH 0.199740826450662 0.199740826450662 NA NA no change no change NA NA 8:17341363 8:17373240 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA -MTMR7--MTMR7 BS_TG93XC55 1.43450174242636 1.43450174242636 NA NA no change no change NA NA 8:17341363 8:17373240 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA -MTMR7--MTMR7 BS_VMMJYN8Z 0.692264766483076 0.692264766483076 NA NA no change no change NA NA 8:17341363 8:17373240 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA -MTMR7--MTMR7 BS_WCRKYV0T 1.67737658725631 1.67737658725631 NA NA no change no change NA NA 8:17341363 8:17373240 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA -MTMR7--MTMR7 BS_ZRM0W01M 1.01424698828701 1.01424698828701 NA NA no change no change NA NA 8:17341363 8:17373240 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA -MTOR--MTOR BS_CZ3NA7KV -0.130471671298006 -0.130471671298006 NA NA no change no change NA NA 1:11121246 1:11130777 ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.16Mb]],duplication/non-canonical_splicing MTOR NA MTOR NA CosmicCensus, Oncogene, Kinase CosmicCensus, Oncogene, Kinase NA NA NA -MTOR--PEX14 BS_MN5XVP5A -0.01480563768093 -0.3858734700498 NA NA no change no change NA NA 1:11209311 1:10594602 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr1:0.48Mb]],deletion/5'-5' MTOR NA PEX14 NA CosmicCensus, Oncogene, Kinase NA NA NA NA -MTPN--AC005165.1(175890)/AC010719.1(21773) BS_6JHXXVR7 3.46841488075767 NA NA NA differentially expressed NA NA NA 7:135950599 7:25926884 ARRIBA frameshift 33 2 high [],inversion MTPN NA AC005165.1 AC010719.1 NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--AL049544.1 BS_C7N3J4NW NA NA NA NA NA NA NA NA 6:61606290 6:61661364 ARRIBA other 4 1 high [],duplication MTRNR2L9 AL049544.1 AL049544.1 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--AL049544.1 BS_DMZP9G1H NA NA NA NA NA NA NA NA 6:61606290 6:61661364 ARRIBA other 4 0 medium [],duplication MTRNR2L9 AL049544.1 AL049544.1 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--AL049544.1 BS_E3BAT4C1 NA NA NA NA NA NA NA NA 6:61606290 6:61661364 ARRIBA other 6 0 medium [],duplication MTRNR2L9 AL049544.1 AL049544.1 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--AL049544.1 BS_ERWT0ZWE NA NA NA NA NA NA NA NA 6:61606290 6:61661364 ARRIBA other 4 0 medium [],duplication MTRNR2L9 AL049544.1 AL049544.1 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--AL049544.1 BS_K5802F84 NA NA NA NA NA NA NA NA 6:61606290 6:61661364 ARRIBA other 4 0 medium [],duplication MTRNR2L9 AL049544.1 AL049544.1 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--AL049544.1 BS_KPT2WPHW NA NA NA NA NA NA NA NA 6:61606290 6:61661364 ARRIBA other 3 1 medium [],duplication MTRNR2L9 AL049544.1 AL049544.1 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--AL049544.1 BS_ZH1FBX50 NA NA NA NA NA NA NA NA 6:61606290 6:61661364 ARRIBA other 5 0 medium [],duplication MTRNR2L9 AL049544.1 AL049544.1 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--AL049544.1 BS_ZR96A4FH NA NA NA NA NA NA NA NA 6:61606290 6:61661364 ARRIBA other 6 0 medium [],duplication MTRNR2L9 AL049544.1 AL049544.1 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_0T17SY47 NA 1.79680233896955 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 3 1 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_0X9EGHY2 NA 1.47817245021342 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 4 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_1T19NFJ8 NA 0.698335660834217 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 13 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_2XD3MNKD NA 0.969107299223354 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 7 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_398KYV92 NA 1.57478714978457 NA NA NA no change NA NA 6:61606290 6:61681060 ARRIBA other 2 0 low [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_39CGACC7 NA 0.151156942910665 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 8 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_3MS8WVNR NA -0.555524073936813 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 4 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_3T6X4BPC NA 1.46937313049756 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 6 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_4W1DBAN4 NA 2.13090357032144 NA NA NA differentially expressed NA NA 6:61606290 6:61697253 ARRIBA other 7 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_5K3R0F5D NA 0.712275104703411 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 5 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_60K3EQ9S NA -0.0626702807821525 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 3 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_680K119G NA 0.0372980274680282 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 3 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_6MY8W3H0 NA 1.90445641372772 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 8 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_7XRN3CFX NA 0.118467047770292 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 4 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_8MA5B8Y9 NA 0.735252087756817 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 5 5 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_912NX4Y0 NA 1.9862792724227 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 10 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_92VDQ0NE NA 1.19166214578976 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 13 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_AKRHBPNZ NA 1.44865930915893 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 5 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_AMQGM1V9 NA 1.98195740628604 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 6 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_BKR4E30C NA 0.0579630373772898 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 6 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_C6ZZ3FY5 NA 0.698335660834217 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 3 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_CREQ97QC NA 0.665350661511819 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 4 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_CW9QV8AG NA 1.3442252842268 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 5 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_DMZP9G1H NA 1.9667422037428 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 4 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_DVCQ8XDZ NA 1.11709417110714 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 7 1 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_EFE4YEK3 NA 4.30840773557407 NA NA NA differentially expressed NA NA 6:61606290 6:61697253 ARRIBA other 8 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_ERWT0ZWE NA 3.84497403113082 NA NA NA differentially expressed NA NA 6:61606290 6:62047994 ARRIBA other 2 1 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_FJZPQZ2C NA -0.585442491583804 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 4 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_FW5ECXXK NA 0.547042799929981 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 6 2 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_HCP5C912 NA 1.85850027367381 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 27 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_JXNZYGCR NA 1.35055256576934 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 5 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_K5802F84 NA 1.85616893996672 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 16 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_KPT2WPHW NA 2.14470046564283 NA NA NA differentially expressed NA NA 6:61606290 6:61697253 ARRIBA other 9 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_M1PVEHCM NA 2.1209784054705 NA NA NA differentially expressed NA NA 6:61606290 6:61697253 ARRIBA other 7 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_M4NVX721 NA 0.425216378825856 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 3 1 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_MF47B9ZW NA 2.65635898778757 NA NA NA differentially expressed NA NA 6:61606290 6:61697253 ARRIBA other 5 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_NT9NZYFD NA 0.996652805181638 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 7 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_PQ7CQFYR NA 1.77490311348365 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 4 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_QNAQGAV6 NA 0.500423951049855 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 6 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_QV51J756 NA 1.43069784222765 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 9 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_SBFNFZ8B NA 1.75271296727691 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 3 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_TG93XC55 NA 2.39742003299965 NA NA NA differentially expressed NA NA 6:61606290 6:61697253 ARRIBA other 11 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_V3Z3DB4N NA -0.351109312753934 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 5 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_VMMJYN8Z NA 0.815446703327828 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 4 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_VNE0ZPBS NA 2.12495555099215 NA NA NA differentially expressed NA NA 6:61606290 6:61697253 ARRIBA other 8 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_VPMKHW9X NA 1.67394185556116 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 11 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_VTJ9ESSV NA 0.425216378825856 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 5 1 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_WCRKYV0T NA 1.79921795808898 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 12 1 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_X4X1SFSE NA 0.674841598010711 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 3 1 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_XJTW0P8P NA 1.87010838383592 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 6 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_YB2RXRHT NA 1.19513130660053 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 15 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_YMAJC22S NA 1.25303069227153 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 8 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_Z7PKVY9J NA 5.66155201621935 NA NA NA differentially expressed NA NA 6:61606290 6:61697253 ARRIBA other 8 1 low [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_ZH1FBX50 NA 2.12296816190587 NA NA NA differentially expressed NA NA 6:61606290 6:61697253 ARRIBA other 16 1 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_ZR96A4FH NA 2.36676962571343 NA NA NA differentially expressed NA NA 6:61606290 6:61697253 ARRIBA other 26 1 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_ZZPBANDD NA -0.422581191375689 NA NA NA no change NA NA 6:61606290 6:61697253 ARRIBA other 3 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA -MTSS1--CASC8 BS_WMEHNDSK 5.02153125311621 37.972061706893 NA NA differentially expressed differentially expressed NA NA 8:124699526 8:127420963 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr8:2.56Mb]],duplication MTSS1 NA CASC8 NA TumorSuppressorGene NA NA NA NA -MTSS1--CASC8 BS_WMEHNDSK 5.02153125311621 37.972061706893 NA NA differentially expressed differentially expressed NA NA 8:124699526 8:127290060 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr8:2.56Mb]],duplication MTSS1 NA CASC8 NA TumorSuppressorGene NA NA NA NA -MTSS1--CASC8(64175)/CASC11(140029) BS_WMEHNDSK 5.02153125311621 37.972061706893 NA 68.0048619121525 differentially expressed differentially expressed NA differentially expressed 8:124663208 8:127546314 ARRIBA other 4 1 medium [],duplication MTSS1 NA CASC8 CASC11 TumorSuppressorGene NA NA NA NA -MTSS1--CLU BS_Z7PKVY9J 3.73389535557254 -1.24190513122216 NA NA differentially expressed no change NA NA 8:124556298 8:27605334 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr8:96.94Mb]],deletion MTSS1 NA CLU NA TumorSuppressorGene TumorSuppressorGene, Oncogene NA NA NA -MTSS1--FAM135B BS_WMEHNDSK 5.02153125311621 6.47933894592062 NA NA differentially expressed differentially expressed NA NA 8:124556450 8:138390962 ARRIBA other 9 2 medium [INTRACHROMOSOMAL[chr8:13.40Mb]],inversion/5'-5' MTSS1 NA FAM135B NA TumorSuppressorGene CosmicCensus NA NA NA -MTSS1--MTSS1 BS_0Y66ZBWE 3.49822788080021 3.49822788080021 NA NA differentially expressed differentially expressed NA NA 8:124555742 8:124558832 ARRIBA frameshift 15 4 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MTSS1--MTSS1 BS_470DYRJQ 1.83852292921997 1.83852292921997 NA NA no change no change NA NA 8:124555742 8:124558832 ARRIBA frameshift 22 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MTSS1--MTSS1 BS_5PEFNDCY 2.40955202655797 2.40955202655797 NA NA differentially expressed differentially expressed NA NA 8:124555742 8:124558832 ARRIBA frameshift 23 3 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MTSS1--MTSS1 BS_90B22NGP 3.40325648429872 3.40325648429872 NA NA differentially expressed differentially expressed NA NA 8:124555742 8:124558832 ARRIBA frameshift 20 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MTSS1--MTSS1 BS_9DZ253JY -0.844867063996434 -0.844867063996434 NA NA no change no change NA NA 8:124555742 8:124558832 ARRIBA frameshift 6 3 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MTSS1--MTSS1 BS_FEPRNEXX 2.01105043960387 2.01105043960387 NA NA differentially expressed differentially expressed NA NA 8:124555742 8:124558832 ARRIBA frameshift 11 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MTSS1--MTSS1 BS_J71N7D09 2.97196056370411 2.97196056370411 NA NA differentially expressed differentially expressed NA NA 8:124555742 8:124558832 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MTSS1--MTSS1 BS_N6NE6B3W 2.32012532868115 2.32012532868115 NA NA differentially expressed differentially expressed NA NA 8:124555742 8:124558832 ARRIBA frameshift 44 13 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MTSS1--MTSS1 BS_QEYPFYHD 3.97579060205475 3.97579060205475 NA NA differentially expressed differentially expressed NA NA 8:124555742 8:124558832 ARRIBA frameshift 44 6 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MTSS1--MTSS1 BS_QWNBZ9RJ 3.40589088875528 3.40589088875528 NA NA differentially expressed differentially expressed NA NA 8:124555742 8:124558832 ARRIBA frameshift 45 5 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MTSS1--MTSS1 BS_SFKZSJN1 1.49117024804738 1.49117024804738 NA NA no change no change NA NA 8:124555742 8:124558832 ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MTSS1--MTSS1 BS_X0F9AYEC 2.16977478202785 2.16977478202785 NA NA differentially expressed differentially expressed NA NA 8:124555742 8:124558832 ARRIBA frameshift 23 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MTSS1--MTSS1 BS_ZA9XT151 0.341931619561428 0.341931619561428 NA NA no change no change NA NA 8:124555742 8:124558832 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -MTSS1--ZFAT BS_WMEHNDSK 5.02153125311621 15.2368026122682 NA NA differentially expressed differentially expressed NA NA 8:124727884 8:134509749 ARRIBA frameshift 600 90 high [INTRACHROMOSOMAL[chr8:9.75Mb]],duplication MTSS1 NA ZFAT NA TumorSuppressorGene TranscriptionFactor NA NA NA -MTSS1--ZFAT BS_WMEHNDSK 5.02153125311621 15.2368026122682 NA NA differentially expressed differentially expressed NA NA 8:124727884 8:134478721 ARRIBA in-frame 140 24 high [INTRACHROMOSOMAL[chr8:9.75Mb]],duplication MTSS1 NA ZFAT NA TumorSuppressorGene TranscriptionFactor NA NA NA -MUC20--MUC20P1(8166)/AC233280.19(6789) BS_M1T1K5WV 3.43595245959918 NA NA NA differentially expressed NA NA NA 3:195729739 3:195628399 ARRIBA frameshift 3 0 medium [],duplication MUC20 NA MUC20P1 AC233280.19 NA NA NA NA NA -MUC5B--AC139749.1 BS_MX23ZY0Y -0.166033859038171 NA NA NA no change NA NA NA 11:1256609 11:1054239 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr11:0.17Mb]],inversion/3'-3' MUC5B NA AC139749.1 NA NA NA NA NA NA -MVB12B--TTC17 BS_5AF6ZNJF -1.25708943639814 1.19235513632497 NA NA no change no change NA NA 9:126450032 11:43405876 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr9--chr11]],translocation MVB12B NA TTC17 NA NA NA NA NA NA -MYB--AL358972.1(148135)/AL450345.1(330971) BS_3F4FQJMR 3.57825066041215 NA NA NA differentially expressed NA NA NA 6:135196238 6:164496779 ARRIBA other 3 1 medium [],deletion MYB NA AL358972.1 AL450345.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -MYB--MMP16 BS_ERJAJ0KA 8.27018934833848 7.87368056290788 NA NA differentially expressed differentially expressed NA NA 6:135203324 8:88168894 ARRIBA frameshift 127 5 high [INTERCHROMOSOMAL[chr6--chr8]],translocation/5'-5' MYB NA MMP16 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -MYB--QKI BS_E1CGF3KV 9.02894310471745 2.71196805791191 NA NA differentially expressed differentially expressed NA NA 6:135203324 6:163561982 ARRIBA in-frame 107 5 high [ChimerPub,INTRACHROMOSOMAL[chr6:28.19Mb]],deletion MYB NA QKI NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA -MYB--QKI BS_W4HGV6E7 9.10196567919669 2.1446437561174 NA NA differentially expressed differentially expressed NA NA 6:135200415 6:163561982 ARRIBA in-frame 448 65 high [ChimerPub,INTRACHROMOSOMAL[chr6:28.19Mb]],deletion MYB NA QKI NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA -MYB--QKI BS_W4HGV6E7 9.10196567919669 2.1446437561174 NA NA differentially expressed differentially expressed NA NA 6:135200415 6:163563444 ARRIBA frameshift 1 10 medium [ChimerPub,INTRACHROMOSOMAL[chr6:28.19Mb]],deletion MYB NA QKI NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA -MYB--QKI BS_W4HGV6E7 9.10196567919669 2.1446437561174 NA NA differentially expressed differentially expressed NA NA 6:135200415 6:163566721 ARRIBA frameshift 1 0 low [ChimerPub,INTRACHROMOSOMAL[chr6:28.19Mb]],deletion MYB NA QKI NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA -MYBL1--AC046195.1 BS_AWH9757B 6.04663838138519 NA NA NA differentially expressed NA NA NA 8:66585983 8:138071555 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:71.20Mb]],inversion/5'-5' MYBL1 NA AC046195.1 NA Oncogene, TranscriptionFactor, Oncogene NA NA NA NA -MYBL1--AC079015.1 BS_AWH9757B 6.04663838138519 NA NA NA differentially expressed NA NA NA 8:66592440 8:138072901 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr8:71.45Mb]],inversion MYBL1 NA AC079015.1 NA Oncogene, TranscriptionFactor, Oncogene NA NA NA NA -MYBL1--NSMAF(109700)/TOX(35874) BS_AWH9757B 6.04663838138519 0.652245952893013 NA -0.297808099648475 differentially expressed no change NA no change 8:66612819 8:58769544 ARRIBA frameshift 4 0 high [],deletion MYBL1 NA NSMAF TOX Oncogene, TranscriptionFactor, Oncogene NA NA NA NA -MYC--CASC8 BS_FKDQJJB5 13.5086529339214 59.2735410856717 NA NA differentially expressed differentially expressed NA NA 8:127736623 8:127420963 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.25Mb]],inversion MYC NA CASC8 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -MYC--IGHM BS_1607397Q 11.6158108584773 16.3719400679778 NA NA differentially expressed differentially expressed NA NA 8:127735586 14:105856217 ARRIBA other 54 5 medium [INTERCHROMOSOMAL[chr8--chr14]],translocation/3'-3' MYC NA IGHM NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -MYC--MIR4537 BS_1607397Q 11.6158108584773 NA NA NA differentially expressed NA NA NA 8:127735574 14:105859642 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr8--chr14]],translocation/3'-3' MYC NA MIR4537 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -MYC--MIR4537(89)/IGHJ6(3556) BS_1607397Q 11.6158108584773 NA NA NA differentially expressed NA NA NA 8:127735574 14:105859642 ARRIBA other 12 2 medium [],translocation MYC NA MIR4537 IGHJ6 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -MYCN--AC010880.1 BS_9NZ2D6AD 16.5788596595211 NA NA NA differentially expressed NA NA NA 2:15942854 2:16392253 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.41Mb]],deletion MYCN NA AC010880.1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -MYCN--CCND2 BS_W644VEVE 17.0922306769188 10.5051335938283 NA NA differentially expressed differentially expressed NA NA 2:15942854 12:4299860 ARRIBA frameshift 5 1 medium [INTERCHROMOSOMAL[chr2--chr12]],translocation MYCN NA CCND2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA -MYH9--EIF3D BS_996ZS2A4 4.41360016520186 2.24604824716662 NA NA differentially expressed differentially expressed NA NA 22:36285121 22:36526131 ARRIBA in-frame 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr22:0.12Mb]],duplication MYH9 NA EIF3D NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -MYH9--MLC1 BS_49BQS7Z6 1.60675751637715 1.69724397726497 NA NA no change no change NA NA 22:36335506 22:50083173 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr22:13.67Mb]],inversion/3'-3' MYH9 NA MLC1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -MYH9--MLC1 BS_GXTFW99H 6.6417025347463 -2.8333677955345 NA NA differentially expressed differentially expressed NA NA 22:36335506 22:50083173 ARRIBA other 13 0 high [INTRACHROMOSOMAL[chr22:13.67Mb]],inversion/3'-3' MYH9 NA MLC1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -MYL6--LIMA1 BS_A0DYVX9J 2.70047870445778 1.70226840858618 NA NA differentially expressed no change NA NA 12:56160320 12:50182037 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr12:5.87Mb]],inversion MYL6 NA LIMA1 NA NA TumorSuppressorGene NA NA NA -MYLK--MYLK BS_8ZD6J47V -0.969933472130383 -0.969933472130383 NA NA no change no change NA NA 3:123638071 3:123667187 ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr3:0.27Mb]],duplication/non-canonical_splicing MYLK NA MYLK NA Kinase Kinase NA NA NA -MYO10--MYO10 BS_TA9WP4TH 2.35596028793903 2.35596028793903 NA NA differentially expressed differentially expressed NA NA 5:16754828 5:16818167 ARRIBA in-frame 18 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.27Mb]],duplication/non-canonical_splicing MYO10 NA MYO10 NA NA NA NA NA NA -MYO16--MYO16 BS_196BBNEJ 4.80584737341321 4.80584737341321 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_399RPKC9 2.67960478868087 2.67960478868087 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_3X9WMZGJ 4.84324615650943 4.84324615650943 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_49BQS7Z6 5.13526792125851 5.13526792125851 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 18 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_4SCWT0FX 2.0453388871045 2.0453388871045 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_53M8PP88 5.7230385661857 5.7230385661857 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_67Z63A2K 6.39760485444667 6.39760485444667 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 31 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_8PNA0V6R 4.34841848084691 4.34841848084691 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_9DZ253JY 3.03237273897317 3.03237273897317 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_AMQGM1V9 8.1252509558309 8.1252509558309 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 9 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_BPWEFR89 11.3843831111929 11.3843831111929 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 28 6 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_EFE4YEK3 10.6670095215275 10.6670095215275 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 14 4 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_G3RJTBZD 2.47027210214237 2.47027210214237 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_HA20Y4XY 2.83776613240508 2.83776613240508 NA NA differentially expressed differentially expressed NA NA 13:108898133 13:108883059 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_HCP5C912 3.92665738954447 3.92665738954447 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 13 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_J8VX4D17 4.22560220396112 4.22560220396112 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 8 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_JXNZYGCR 3.11836071716687 3.11836071716687 NA NA differentially expressed differentially expressed NA NA 13:108898133 13:108883059 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_KPT2WPHW 6.95901429851269 6.95901429851269 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_M1T1K5WV 4.20550807946643 4.20550807946643 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 19 3 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_R7HZCZ8B 2.572456621104 2.572456621104 NA NA differentially expressed differentially expressed NA NA 13:108898133 13:108883059 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_SDCNP7MW 3.3763874737526 3.3763874737526 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 2 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_T4P3J13C 5.03177155429872 5.03177155429872 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 6 3 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_TRKH2SPE 0.688996957641724 0.688996957641724 NA NA no change no change NA NA 13:108910150 13:108883059 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_TXZ7KHTQ 5.00438542677515 5.00438542677515 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_W644VEVE 7.15588299131567 7.15588299131567 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 18 5 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_W9N9844Q 4.44339658991596 4.44339658991596 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 22 3 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_WWKNJSJ5 1.53235210672062 1.53235210672062 NA NA no change no change NA NA 13:108898133 13:108883059 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_X59HSFGG 4.31450091043971 4.31450091043971 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 4 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_Z6BWR941 3.74576300333999 3.74576300333999 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_ZR96A4FH 4.7806705705785 4.7806705705785 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 11 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO16--MYO16 BS_ZXYDSBM9 3.18137306360067 3.18137306360067 NA NA differentially expressed differentially expressed NA NA 13:108910150 13:108883059 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA -MYO18B--LINC02560 BS_1HQ76V6D 7.4472859321154 NA NA NA differentially expressed NA NA NA 22:26004855 19:58400297 ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr22--chr19]],translocation MYO18B NA LINC02560 NA TumorSuppressorGene NA NA NA NA -MYO1B--DNAH7 BS_SFRQXM76 5.80671542739965 1.44824868227395 NA NA differentially expressed no change NA NA 2:191396497 2:195756285 ARRIBA in-frame 9 0 high [INTRACHROMOSOMAL[chr2:4.31Mb]],inversion MYO1B NA DNAH7 NA NA NA NA NA NA -MYO1D--MYO1D BS_1G3WYEN3 -0.233043524982609 -0.233043524982609 NA NA no change no change NA NA 17:32605087 17:32755662 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.38Mb]],duplication/non-canonical_splicing MYO1D NA MYO1D NA NA NA NA NA NA -MYO3A--MYO3A BS_03FT4S8B 3.32856890310251 3.32856890310251 NA NA differentially expressed differentially expressed NA NA 10:26193311 10:26173663 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.28Mb]],duplication/non-canonical_splicing MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA -MYO3A--MYO3A BS_196BBNEJ 5.21665742357809 5.21665742357809 NA NA differentially expressed differentially expressed NA NA 10:26193311 10:26173663 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.28Mb]],duplication/non-canonical_splicing MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA -MYO3A--MYO3A BS_8RHPJ740 6.2874813869769 6.2874813869769 NA NA differentially expressed differentially expressed NA NA 10:26193311 10:26173663 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.28Mb]],duplication/non-canonical_splicing MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA -MYO3A--MYO3A BS_JHGW42S6 5.69487240754913 5.69487240754913 NA NA differentially expressed differentially expressed NA NA 10:26193311 10:26173663 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.28Mb]],duplication/non-canonical_splicing MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA -MYO3A--MYO3A BS_N8J1DP02 3.93377223912116 3.93377223912116 NA NA differentially expressed differentially expressed NA NA 10:26193311 10:26173663 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.28Mb]],duplication/non-canonical_splicing MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA -MYO3A--MYO3A BS_W4HGV6E7 3.10170404784092 3.10170404784092 NA NA differentially expressed differentially expressed NA NA 10:26193311 10:26173663 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.28Mb]],duplication/non-canonical_splicing MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA -MYO3A--MYO3A BS_WFD0GE5X 6.58798914393632 6.58798914393632 NA NA differentially expressed differentially expressed NA NA 10:26193311 10:26173663 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.28Mb]],duplication/non-canonical_splicing MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA -MYO7A--SWT1 BS_6VPKXXMR 2.09143653588768 7.48832417453515 NA NA differentially expressed differentially expressed NA NA 11:77130652 1:185231577 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr11--chr1]],translocation MYO7A NA SWT1 NA NA NA NA NA NA -MYO9A--ARHGAP26 BS_6HTK4YJP 4.60771595792019 3.44040640536611 NA NA differentially expressed differentially expressed NA NA 15:71959901 5:143056028 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr15--chr5]],translocation MYO9A NA ARHGAP26 NA NA CosmicCensus, Oncogene NA NA NA -MYO9A--MYO9A BS_NGHK9RZP 1.20599925192852 1.20599925192852 NA NA no change no change NA NA 15:71859735 15:71883736 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.30Mb]],duplication/non-canonical_splicing MYO9A NA MYO9A NA NA NA NA NA NA -MYO9B--CHKA BS_W80TJC27 -2.19107631089961 -2.36577048203146 NA NA differentially expressed differentially expressed NA NA 19:17075874 11:68054047 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr19--chr11]],translocation MYO9B NA CHKA NA NA Oncogene, Kinase NA NA NA -MYOF--PDE6C BS_M85CXHDV 4.65274190144678 -0.987338334075345 NA NA differentially expressed no change NA NA 10:93374869 10:93639265 ARRIBA frameshift 4 0 low [INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/5'-5' MYOF NA PDE6C NA NA NA NA NA NA -MYOM2(327320)/AC245519.1(1004)--AC245519.1 BS_912NX4Y0 -0.28465466371959 NA NA NA no change NA NA NA 8:2492872 8:2494091 ARRIBA other 8 1 medium [],duplication MYOM2 AC245519.1 AC245519.1 NA NA NA NA NA NA -MYOM2(327320)/AC245519.1(1004)--AC245519.1 BS_M15PW2N0 -1.00856520945998 NA NA NA no change NA NA NA 8:2492872 8:2494091 ARRIBA other 26 3 high [],duplication MYOM2 AC245519.1 AC245519.1 NA NA NA NA NA NA -MYOM2(327320)/AC245519.1(1004)--AC245519.1 BS_TG93XC55 -1.13812672226975 NA NA NA no change NA NA NA 8:2492872 8:2494091 ARRIBA other 15 1 high [],duplication MYOM2 AC245519.1 AC245519.1 NA NA NA NA NA NA -MYRFL--MYRFL BS_JVA2NQFF 1.64731274872458 1.64731274872458 NA NA no change no change NA NA 12:69910930 12:69855280 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing MYRFL NA MYRFL NA TranscriptionFactor TranscriptionFactor NA NA NA -MYRFL--MYRFL BS_N1E0H8YQ 1.73910097032138 1.73910097032138 NA NA no change no change NA NA 12:69910930 12:69855280 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing MYRFL NA MYRFL NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--LINC01115 BS_MQCKXD60 0.6519149416045 8.47568510765466 NA NA no change differentially expressed NA NA 2:2284404 2:806249 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr2:0.92Mb]],deletion MYT1L NA LINC01115 NA TranscriptionFactor NA NA NA NA -MYT1L--MYT1L BS_0T17SY47 0.630878365167424 0.630878365167424 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_1G3WYEN3 0.991821296744162 0.991821296744162 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 9 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_1T19NFJ8 0.246160012607327 0.246160012607327 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_2XD3MNKD -0.295553079649779 -0.295553079649779 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_37GTVG4N 0.929142375649243 0.929142375649243 NA NA no change no change NA NA 2:1839149 2:1892287 ARRIBA frameshift 24 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_49852ZBH -0.833937924842591 -0.833937924842591 NA NA no change no change NA NA 2:1839149 2:1892287 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_49FQXT2E -0.549743765107898 -0.549743765107898 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_8MA5B8Y9 0.278270679032542 0.278270679032542 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_8RCR7Y4B 0.20441152187085 0.20441152187085 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_AMQGM1V9 1.84126464611398 1.84126464611398 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 18 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_ARFQ1WG3 -0.0217603194287894 -0.0217603194287894 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_B1HVNV0T 1.08175524778127 1.08175524778127 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_BSV07M7Z 1.44418268459067 1.44418268459067 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 15 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_CVGFNCBJ 0.966731551264612 0.966731551264612 NA NA no change no change NA NA 2:1839149 2:1892287 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_DRD9QXR5 -0.383304160999534 -0.383304160999534 NA NA no change no change NA NA 2:1839149 2:1892287 ARRIBA frameshift 8 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_F8N6CFQE -0.994109682779672 -0.994109682779672 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_FEPRNEXX 1.31787484062313 1.31787484062313 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 16 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_FWMJPKCV 0.484478916690872 0.484478916690872 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 18 4 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_HCP5C912 1.0163164093915 1.0163164093915 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 8 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_J483EMFP 0.56898347680459 0.56898347680459 NA NA no change no change NA NA 2:1839149 2:1892287 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_JVA2NQFF 0.234231566158916 0.234231566158916 NA NA no change no change NA NA 2:1839149 2:1892287 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_K5802F84 0.912159958446425 0.912159958446425 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 14 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_KEA474HN -0.75133641894521 -0.75133641894521 NA NA no change no change NA NA 2:1839149 2:1892287 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_KXH37MPN -0.118352432104425 -0.118352432104425 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_KZPR01BD -0.117509030660004 -0.117509030660004 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_M4NVX721 0.810155762078621 0.810155762078621 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_NDN62H0S 0.294808446448857 0.294808446448857 NA NA no change no change NA NA 2:1839149 2:1892287 ARRIBA frameshift 25 4 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_NKRYMHEP 2.02479892100247 2.02479892100247 NA NA differentially expressed differentially expressed NA NA 2:1922292 2:1923263 ARRIBA in-frame 32 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_P39SQPTS 1.46408480574648 1.46408480574648 NA NA no change no change NA NA 2:1839149 2:1892287 ARRIBA frameshift 17 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_QWNBZ9RJ 1.74394355409673 1.74394355409673 NA NA no change no change NA NA 2:1839149 2:1892287 ARRIBA frameshift 45 4 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_R7HZCZ8B 0.140746793901079 0.140746793901079 NA NA no change no change NA NA 2:1839149 2:1892287 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_SFKZSJN1 0.510976675285703 0.510976675285703 NA NA no change no change NA NA 2:1839149 2:1892287 ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_TDEFAPNH 1.07486286555123 1.07486286555123 NA NA no change no change NA NA 2:1839149 2:1892287 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_W18SF91A -1.61831031108123 -1.61831031108123 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_WCRKYV0T 1.56965707239042 1.56965707239042 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 27 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_YB2RXRHT 0.877978169645164 0.877978169645164 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_Z2NWPQKF -1.7324248086433 -1.7324248086433 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_Z7Y2466H -1.24965522189478 -1.24965522189478 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_ZR96A4FH 1.26370720326508 1.26370720326508 NA NA no change no change NA NA 2:1839149 2:1892287 ARRIBA frameshift 9 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYT1L--MYT1L BS_ZRM0W01M 1.06147769515764 1.06147769515764 NA NA no change no change NA NA 2:1922292 2:1923263 ARRIBA frameshift 15 5 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA -MYZAP--LINC01579 BS_AZN38B7V -0.604445248336792 1.47125354814357 NA NA no change no change NA NA 15:57661533 15:93761127 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:36.03Mb]],inversion MYZAP NA LINC01579 NA NA NA NA NA NA -MYZAP--LINC01579 BS_AZN38B7V -0.604445248336792 1.47125354814357 NA NA no change no change NA NA 15:57661533 15:93720965 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:36.03Mb]],inversion MYZAP NA LINC01579 NA NA NA NA NA NA -N4BP2--N4BP2 BS_NGHK9RZP 5.26939309117396 5.26939309117396 NA NA differentially expressed differentially expressed NA NA 4:40144800 4:40142673 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.10Mb]],duplication/non-canonical_splicing N4BP2 NA N4BP2 NA CosmicCensus CosmicCensus NA NA NA -NAA15--NAA15 BS_90B22NGP 2.03444782019708 2.03444782019708 NA NA differentially expressed differentially expressed NA NA 4:139349581 4:139342826 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing NAA15 NA NAA15 NA NA NA NA NA NA -NAA25--AC004160.1 BS_ZV68CES9 2.80184166285806 NA NA NA differentially expressed NA NA NA 12:112108716 7:11379287 ARRIBA frameshift 51 0 high [INTERCHROMOSOMAL[chr12--chr7]],translocation NAA25 NA AC004160.1 NA NA NA NA NA NA -NAA50--DNAH12 BS_FAQQ0GCQ 1.3742033941451 -0.46781920009888 NA NA no change no change NA NA 3:113721545 3:57494508 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr3:56.17Mb]],inversion/5'-5' NAA50 NA DNAH12 NA NA NA NA NA NA -NACAP6(55457)/LINC02150(125195)--AC092335.1 BS_KE56MMY0 -0.115352163425346 NA NA NA no change NA NA NA 5:16248166 5:16183723 ARRIBA other 5 0 medium [],duplication NACAP6 LINC02150 AC092335.1 NA NA NA NA NA NA -NALCN--NALCN BS_044XZ8ST 0.278710472386288 0.278710472386288 NA NA no change no change NA NA 13:101345301 13:101399165 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.36Mb]],duplication/non-canonical_splicing NALCN NA NALCN NA NA NA NA NA NA -NALCN--NALCN BS_DFGS950G 0.238936764551823 0.238936764551823 NA NA no change no change NA NA 13:101345301 13:101399165 ARRIBA frameshift 8 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.36Mb]],duplication/non-canonical_splicing NALCN NA NALCN NA NA NA NA NA NA -NALCN--NALCN BS_DGTPWJ59 1.1593075897666 1.1593075897666 NA NA no change no change NA NA 13:101345301 13:101399165 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.36Mb]],duplication/non-canonical_splicing NALCN NA NALCN NA NA NA NA NA NA -NALCN--NALCN BS_H0QWRJE2 -1.09975563757763 -1.09975563757763 NA NA no change no change NA NA 13:101345300 13:101378652 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.36Mb]],duplication/non-canonical_splicing NALCN NA NALCN NA NA NA NA NA NA -NALCN--NALCN BS_RR12T74P 0.788106870806466 0.788106870806466 NA NA no change no change NA NA 13:101345300 13:101378652 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.36Mb]],duplication/non-canonical_splicing NALCN NA NALCN NA NA NA NA NA NA -NALCN--NALCN BS_TCGEZJ5F 1.09744230953597 1.09744230953597 NA NA no change no change NA NA 13:101345301 13:101399165 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.36Mb]],duplication/non-canonical_splicing NALCN NA NALCN NA NA NA NA NA NA -NARS2--DRD2(103365)/TMPRSS5(108494) BS_T1YHK6B7 4.81036698793786 -0.453802371262622 NA 0.40241264287377 differentially expressed no change NA no change 11:78559539 11:113579056 ARRIBA frameshift 4 1 high [],inversion NARS2 NA DRD2 TMPRSS5 NA NA NA NA NA -NATD1--TTC28 BS_49FQXT2E 1.13270205221229 4.49722048249229 NA NA no change differentially expressed NA NA 17:21241679 22:28366951 ARRIBA other 13 1 medium [INTERCHROMOSOMAL[chr17--chr22]],translocation/5'-5' NATD1 NA TTC28 NA NA NA NA NA NA -NAV2--COL4A5 BS_4B0BAVTX 6.4500898831576 1.56358028468523 NA NA differentially expressed no change NA NA 11:19351027 X:108539746 ARRIBA in-frame 7 1 high [INTERCHROMOSOMAL[chr11--chrX]],translocation NAV2 NA COL4A5 NA NA NA NA NA NA -NAV2--KIRREL3 BS_CZ3NA7KV 1.10610792454015 -3.09727362124146 NA NA no change differentially expressed NA NA 11:19351027 11:126562912 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr11:106.30Mb]],inversion NAV2 NA KIRREL3 NA NA NA NA NA NA -NAV2--NMU(130008)/RNU6-276P(31930) BS_FCAKKZ20 2.43354468032529 3.92222728311882 NA NA differentially expressed differentially expressed NA NA 11:20078104 4:55766706 ARRIBA frameshift 2 0 medium [],translocation NAV2 NA NMU RNU6-276P NA NA NA NA NA -NAV2--SBF2 BS_49FQXT2E 2.74547436514407 0.983738664477327 NA NA differentially expressed no change NA NA 11:19351027 11:9785318 ARRIBA in-frame 13 1 high [INTRACHROMOSOMAL[chr11:9.06Mb]],inversion NAV2 NA SBF2 NA NA NA NA NA NA -NBAS--ABCB11 BS_RRAEQZ97 -0.276384285583669 14.6493212324994 NA NA no change differentially expressed NA NA 2:15292537 2:168996722 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr2:153.36Mb]],duplication NBAS NA ABCB11 NA NA NA NA NA NA -NBAS--AC010145.1 BS_DY88N5ZT 10.6542760088655 NA NA NA differentially expressed NA NA NA 2:15551493 2:15997609 ARRIBA frameshift 12 2 medium [INTRACHROMOSOMAL[chr2:0.44Mb]],duplication NBAS NA AC010145.1 NA NA NA NA NA NA -NBAS--AC010145.1 BS_DY88N5ZT 10.6542760088655 NA NA NA differentially expressed NA NA NA 2:15551493 2:15997412 ARRIBA frameshift 6 2 medium [INTRACHROMOSOMAL[chr2:0.44Mb]],duplication NBAS NA AC010145.1 NA NA NA NA NA NA -NBAS--AC010145.1 BS_DY88N5ZT 10.6542760088655 NA NA NA differentially expressed NA NA NA 2:15366580 2:15997412 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr2:0.44Mb]],duplication NBAS NA AC010145.1 NA NA NA NA NA NA -NBAS--AC062039.1 BS_29X4ZX6Q 5.3445459679519 NA NA NA differentially expressed NA NA NA 2:15461201 2:192629921 ARRIBA frameshift 12 2 medium [INTRACHROMOSOMAL[chr2:177.07Mb]],inversion NBAS NA AC062039.1 NA NA NA NA NA NA -NBAS--AC062039.1 BS_29X4ZX6Q 5.3445459679519 NA NA NA differentially expressed NA NA NA 2:15461201 2:192645238 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:177.07Mb]],inversion NBAS NA AC062039.1 NA NA NA NA NA NA -NBAS--AC083899.1 BS_ZXYDSBM9 -0.288684817917941 28.9381558844242 NA NA no change differentially expressed NA NA 2:15534543 2:87116535 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr2:71.56Mb]],inversion NBAS NA AC083899.1 NA NA NA NA NA NA -NBAS--AC125232.2(60735)/AC092651.1(1999) BS_ZXYDSBM9 -0.288684817917941 NA NA 3.38977948872438 no change NA NA differentially expressed 2:15534543 2:87116535 ARRIBA frameshift 8 3 high [],inversion NBAS NA AC125232.2 AC092651.1 NA NA NA NA NA -NBAS--AC125232.2(60735)/AC092651.1(1999) BS_ZXYDSBM9 -0.288684817917941 NA NA 3.38977948872438 no change NA NA differentially expressed 2:15534543 2:87116535 ARRIBA frameshift 6 3 high [],inversion NBAS NA AC125232.2 AC092651.1 NA NA NA NA NA -NBAS--AL031282.1 BS_JRYJGYC4 3.1358684255944 NA NA NA differentially expressed NA NA NA 2:15218773 1:1728238 ARRIBA frameshift 7 0 high [INTERCHROMOSOMAL[chr2--chr1]],translocation NBAS NA AL031282.1 NA NA NA NA NA NA -NBAS--AL031282.1 BS_JRYJGYC4 3.1358684255944 NA NA NA differentially expressed NA NA NA 2:15218773 1:1735817 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr2--chr1]],translocation NBAS NA AL031282.1 NA NA NA NA NA NA -NBAS--AL031282.1 BS_JRYJGYC4 3.1358684255944 NA NA NA differentially expressed NA NA NA 2:15218773 1:1730246 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr2--chr1]],translocation NBAS NA AL031282.1 NA NA NA NA NA NA -NBAS--AL031282.2 BS_JRYJGYC4 3.1358684255944 NA NA NA differentially expressed NA NA NA 2:15218773 1:1728238 ARRIBA frameshift 7 0 high [INTERCHROMOSOMAL[chr2--chr1]],translocation/5'-5' NBAS NA AL031282.2 NA NA NA NA NA NA -NBAS--LINC01804(31782)/AC113608.2(25626) BS_P0QF87WC 3.34288804943353 NA NA NA differentially expressed NA NA NA 2:15558580 2:15776121 ARRIBA frameshift 4 0 medium [],inversion NBAS NA LINC01804 AC113608.2 NA NA NA NA NA -NBAS--LINC01804(31782)/AC113608.2(25626) BS_WAXJY4XQ 3.23531681296091 NA NA NA differentially expressed NA NA NA 2:15558580 2:15776121 ARRIBA frameshift 2 1 medium [],inversion NBAS NA LINC01804 AC113608.2 NA NA NA NA NA -NBAS--MYCNOS BS_DY88N5ZT 10.6542760088655 10.5190868684871 NA NA differentially expressed differentially expressed NA NA 2:15461201 2:15941097 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr2:0.36Mb]],duplication NBAS NA MYCNOS NA NA NA NA NA NA -NBAS--MYCNOS BS_DY88N5ZT 10.6542760088655 10.5190868684871 NA NA differentially expressed differentially expressed NA NA 2:15366580 2:15941097 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr2:0.36Mb]],duplication NBAS NA MYCNOS NA NA NA NA NA NA -NBAS--MYCNOS BS_DY88N5ZT 10.6542760088655 10.5190868684871 NA NA differentially expressed differentially expressed NA NA 2:15551493 2:15941097 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.36Mb]],duplication NBAS NA MYCNOS NA NA NA NA NA NA -NBAS--PCSK2 BS_P0QF87WC 3.34288804943353 -1.3074748075905 NA NA differentially expressed no change NA NA 2:15383215 20:17379689 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr2--chr20]],translocation/5'-5' NBAS NA PCSK2 NA NA NA NA NA NA -NBAS--SLC35E2 BS_JRYJGYC4 3.1358684255944 3.43437431963042 NA NA differentially expressed differentially expressed NA NA 2:15218773 1:1728238 ARRIBA frameshift 7 0 high [INTERCHROMOSOMAL[chr2--chr1]],translocation/5'-5' NBAS NA SLC35E2 NA NA NA NA NA NA -NBAS--TMEFF2(310478)/AC062039.1(123732) BS_29X4ZX6Q 5.3445459679519 -0.85314076486211 NA NA differentially expressed no change NA NA 2:15452681 2:192506187 ARRIBA other 93 10 medium [],inversion NBAS NA TMEFF2 AC062039.1 NA TumorSuppressorGene NA NA NA -NBEA--AC023310.4(3015)/NBEAP1(11175) BS_92VDQ0NE 0.476684237090947 NA NA 1.21072255058853 no change NA NA no change 13:35110978 15:20646463 ARRIBA frameshift 3 0 medium [],translocation NBEA NA AC023310.4 NBEAP1 CosmicCensus NA NA Oncogene NA -NBEA--AC023310.4(3015)/NBEAP1(11175) BS_R5SNFB5B 0.134361003293948 NA NA 2.7037089163661 no change NA NA differentially expressed 13:35110978 15:20646463 ARRIBA frameshift 3 0 medium [],translocation NBEA NA AC023310.4 NBEAP1 CosmicCensus NA NA Oncogene NA -NBEA--AC023310.4(3015)/NBEAP1(11175) BS_ZV68CES9 2.30336250187542 NA NA 14.6220167576737 differentially expressed NA NA differentially expressed 13:35110978 15:20646463 ARRIBA frameshift 30 0 medium [],translocation NBEA NA AC023310.4 NBEAP1 CosmicCensus NA NA Oncogene NA -NBEA--NBEA BS_7G42J2SK 0.649307032670811 0.649307032670811 NA NA no change no change NA NA 13:35196302 13:35171272 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.73Mb]],duplication/non-canonical_splicing NBEA NA NBEA NA CosmicCensus CosmicCensus NA NA NA -NBEAL1--ICA1L BS_NB42PWZN 6.38562244527021 1.59088545807587 NA NA differentially expressed no change NA NA 2:203183388 2:202819899 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.14Mb]],inversion NBEAL1 NA ICA1L NA NA NA NA NA NA -NBEAL1--ICA1L BS_Z7890YNR 6.48612146360253 0.505012090323954 NA NA differentially expressed no change NA NA 2:203133146 2:202789087 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.14Mb]],inversion NBEAL1 NA ICA1L NA NA NA NA NA NA -NBEAL1--ICA1L BS_Z7890YNR 6.48612146360253 0.505012090323954 NA NA differentially expressed no change NA NA 2:203133146 2:202796964 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.14Mb]],inversion NBEAL1 NA ICA1L NA NA NA NA NA NA -NBEAL2--PTPRG-AS1 BS_0VRSD9V3 0.726457786526912 -1.31990392470064 NA NA no change no change NA NA 3:46996081 3:62357291 ARRIBA frameshift 7 3 medium [INTRACHROMOSOMAL[chr3:15.25Mb]],deletion/5'-5' NBEAL2 NA PTPRG-AS1 NA NA NA NA NA NA -NBEAP1--AC127381.2(17754)/BCAR1P1(7951) BS_GCQFGDTX 28.2958515863099 NA NA -0.203524276977427 differentially expressed NA NA no change 15:20669468 15:20065748 ARRIBA other 3 0 medium [],deletion NBEAP1 NA AC127381.2 BCAR1P1 Oncogene NA NA NA NA -NBPF26--LINC01691(3540774)/AC242852.1(18221882) BS_6MZ7FRZH 1.00437404256377 NA NA NA no change NA NA NA 1:120763709 1:125121298 ARRIBA frameshift 2 0 medium [],inversion NBPF26 NA LINC01691 AC242852.1 NA NA NA NA NA -NCAM1--CADM1 BS_V72H4RQS 0.954128289878702 2.62327963155869 NA NA no change differentially expressed NA NA 11:112961664 11:115240420 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.89Mb]],inversion NCAM1 NA CADM1 NA NA TumorSuppressorGene NA NA NA -NCAM1--CLCF1 BS_G63HYD6N -0.0624841415008172 1.19800187780572 NA NA no change no change NA NA 11:112961664 11:67367626 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr11:45.59Mb]],inversion NCAM1 NA CLCF1 NA NA NA NA NA NA -NCAN--AP003716.1 BS_W80TJC27 0.67497748061973 NA NA NA no change NA NA NA 19:19235096 11:67906010 ARRIBA frameshift 15 3 high [INTERCHROMOSOMAL[chr19--chr11]],translocation NCAN NA AP003716.1 NA NA NA NA NA NA -NCAPG2--CDK14 BS_RB2S0KDF 0.0103950713202447 -0.0640737049510798 NA NA no change no change NA NA 7:158675477 7:90726567 ARRIBA in-frame 2 2 high [INTRACHROMOSOMAL[chr7:67.42Mb]],inversion NCAPG2 NA CDK14 NA NA Kinase NA NA NA -NCK2--AC005040.1(216689)/LINC01789(74328) BS_81SP2HX4 1.65663845931379 NA NA NA no change NA NA NA 2:105882049 2:107180363 ARRIBA frameshift 5 1 high [],deletion NCK2 NA AC005040.1 LINC01789 NA NA NA NA NA -NCK2--TMEM163 BS_RRAEQZ97 0.54130458076693 -1.03146258413732 NA NA no change no change NA NA 2:105745138 2:134713319 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr2:28.56Mb]],inversion NCK2 NA TMEM163 NA NA NA NA NA NA -NCKAP1--FAM171B BS_0WQJP6ZG 0.739864462695034 1.28689858813596 NA NA no change no change NA NA 2:183037992 2:186740228 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr2:3.66Mb]],inversion NCKAP1 NA FAM171B NA NA NA NA NA NA -NCKAP1--KIF5C BS_RRAEQZ97 -0.419398611581338 -1.22752731909584 NA NA no change no change NA NA 2:183023806 2:148898773 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr2:33.88Mb]],deletion/5'-5' NCKAP1 NA KIF5C NA NA NA NA NA NA -NCKAP5--AC112255.1(80575)/UBBP1(15621) BS_M0QYNVK8 6.9737032176387 NA NA -0.248420180733119 differentially expressed NA NA no change 2:133129978 2:136313820 ARRIBA frameshift 4 0 high [],inversion NCKAP5 NA AC112255.1 UBBP1 NA NA NA NA NA -NCKAP5--RN7SKP141(98927)/SMC4P1(55116) BS_M0QYNVK8 6.9737032176387 NA NA NA differentially expressed NA NA NA 2:133517458 2:136489596 ARRIBA frameshift 6 0 medium [],inversion NCKAP5 NA RN7SKP141 SMC4P1 NA NA NA NA NA -NCOA1--NOA1 BS_Q9V7A95C 2.88133428219589 0.185793201630566 NA NA differentially expressed no change NA NA 2:24707888 4:56966656 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr2--chr4]],translocation/5'-5' NCOA1 NA NOA1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -NCOA1--REST BS_Q9V7A95C 2.88133428219589 6.37091328863039 NA NA differentially expressed differentially expressed NA NA 2:24707888 4:56966656 ARRIBA frameshift 18 0 high [INTERCHROMOSOMAL[chr2--chr4]],translocation NCOA1 NA REST NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA -NCOA2--JAG2 BS_TZ5D0A7R 5.87172112426916 1.76229400690467 NA NA differentially expressed no change NA NA 8:70141184 14:105152291 ARRIBA frameshift 10 1 high [INTERCHROMOSOMAL[chr8--chr14]],translocation NCOA2 NA JAG2 NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene NA NA NA -NCOA2--PAX3 BS_K81DR8XG 3.29500313179703 6.25722030898709 NA NA differentially expressed differentially expressed NA NA 8:70155971 2:222202190 ARRIBA in-frame 6 1 high [INTERCHROMOSOMAL[chr8--chr2]],translocation NCOA2 NA PAX3 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -NCOA2--PAX3 BS_K81DR8XG 3.29500313179703 6.25722030898709 NA NA differentially expressed differentially expressed NA NA 8:70138203 2:222232283 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr8--chr2]],translocation NCOA2 NA PAX3 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -NCOA6--NCOA6 BS_NGHK9RZP 0.716550328298229 0.716550328298229 NA NA no change no change NA NA 20:34740363 20:34746928 ARRIBA frameshift 7 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr20:0.14Mb]],duplication/non-canonical_splicing NCOA6 NA NCOA6 NA Oncogene Oncogene NA NA NA -NCOR1--AC006236.1 BS_M0QYNVK8 4.50566284493151 NA NA NA differentially expressed NA NA NA 17:16215814 17:5730681 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr17:10.30Mb]],inversion NCOR1 NA AC006236.1 NA CosmicCensus, Oncogene NA NA NA NA -NCOR1--DNAH9 BS_NJ4WPQVK 3.48104627967117 0.519120982722368 NA NA differentially expressed no change NA NA 17:16079964 17:11929866 ARRIBA in-frame 11 1 high [INTRACHROMOSOMAL[chr17:4.06Mb]],inversion NCOR1 NA DNAH9 NA CosmicCensus, Oncogene Oncogene NA NA NA -NCOR1--GDPD1 BS_6WP1FHTE 1.72102784960227 -0.55450141041219 NA NA no change no change NA NA 17:16186554 17:59257122 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr17:43.00Mb]],inversion NCOR1 NA GDPD1 NA CosmicCensus, Oncogene NA NA NA NA -NCOR1--YWHAE BS_M0QYNVK8 4.50566284493151 -0.800677570061718 NA NA differentially expressed no change NA NA 17:16072145 17:1365058 ARRIBA in-frame 10 0 medium [INTRACHROMOSOMAL[chr17:14.63Mb]],deletion NCOR1 NA YWHAE NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -NCOR1--YWHAE BS_M0QYNVK8 4.50566284493151 -0.800677570061718 NA NA differentially expressed no change NA NA 17:16073429 17:1365058 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr17:14.63Mb]],deletion NCOR1 NA YWHAE NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -NCOR1--YWHAE BS_M0QYNVK8 4.50566284493151 -0.800677570061718 NA NA differentially expressed no change NA NA 17:16075534 17:1365058 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr17:14.63Mb]],deletion NCOR1 NA YWHAE NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -NCOR2--HMGA2 BS_NDFDQBCZ 2.74222615816646 22.0947965752701 NA NA differentially expressed differentially expressed NA NA 12:124385745 12:65951383 ARRIBA in-frame 9 0 high [INTRACHROMOSOMAL[chr12:58.36Mb]],inversion NCOR2 NA HMGA2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -NCOR2--SCARB1 BS_FRM9TG02 3.11855582304504 0.468860501950697 NA NA differentially expressed no change NA NA 12:124483596 12:124778586 ARRIBA in-frame 66 8 high [YOSHIHARA_TCGA,FA_CancerSupp,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr12:0.21Mb]],duplication NCOR2 NA SCARB1 NA CosmicCensus, Oncogene Oncogene NA NA TCGAFusion -NCOR2--SCARB1 BS_RB2S0KDF 3.25330923654286 0.217222840007962 NA NA differentially expressed no change NA NA 12:124437930 12:124817707 ARRIBA in-frame 1 0 low [YOSHIHARA_TCGA,FA_CancerSupp,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr12:0.21Mb]],duplication NCOR2 NA SCARB1 NA CosmicCensus, Oncogene Oncogene NA NA TCGAFusion -NCR3LG1(2324)/AC124798.1(984)--NCR3LG1 BS_N6NE6B3W 1.54854592402695 1.54854592402695 NA NA no change no change NA NA 11:17379665 11:17356651 ARRIBA other 4 0 medium [],duplication NCR3LG1 AC124798.1 NCR3LG1 NA NA NA NA NA NA -NDFIP2--ATP6V1G1P7(1264970)/RPL7P45(104389) BS_P9JP6JFA 0.552896174992374 -0.0294627825494395 NA -0.198106929488752 no change no change NA no change 13:79533456 13:104709938 ARRIBA frameshift 2 0 medium [],inversion NDFIP2 NA ATP6V1G1P7 RPL7P45 NA NA NA NA NA -NDFIP2--ATP6V1G1P7(1270979)/RPL7P45(98380) BS_4QW2S1Q8 0.737154743140145 -0.0294627825494395 NA -0.198106929488752 no change no change NA no change 13:79533456 13:104715947 ARRIBA frameshift 2 0 medium [],inversion NDFIP2 NA ATP6V1G1P7 RPL7P45 NA NA NA NA NA -NDST3--NDST3 BS_1KYGSMA7 0.203595749937878 0.203595749937878 NA NA no change no change NA NA 4:118114960 4:118053756 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing NDST3 NA NDST3 NA NA NA NA NA NA -NDST3--NDST3 BS_3P20Q2C3 -0.343009764478681 -0.343009764478681 NA NA no change no change NA NA 4:118143684 4:118053756 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing NDST3 NA NDST3 NA NA NA NA NA NA -NDST3--NDST3 BS_7B89YR6K 0.222291778396023 0.222291778396023 NA NA no change no change NA NA 4:118143684 4:118053756 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing NDST3 NA NDST3 NA NA NA NA NA NA -NDST3--NDST3 BS_7N0B2CY1 1.32400752517697 1.32400752517697 NA NA no change no change NA NA 4:118143684 4:118053756 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing NDST3 NA NDST3 NA NA NA NA NA NA -NDST3--NDST3 BS_V7BJM89K -0.37753099081603 -0.37753099081603 NA NA no change no change NA NA 4:118143684 4:118053756 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing NDST3 NA NDST3 NA NA NA NA NA NA -NDST3--NDST3 BS_XJTW0P8P 2.34439523537547 2.34439523537547 NA NA differentially expressed differentially expressed NA NA 4:118114960 4:118053756 ARRIBA frameshift 41 3 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing NDST3 NA NDST3 NA NA NA NA NA NA -NDST3--PRSS12 BS_1QNTEZPS -1.51276859919669 5.68994455146108 NA NA no change differentially expressed NA NA 4:118251569 4:118331866 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_INVERSION:+:-:[21390]],duplication/3'-3' NDST3 NA PRSS12 NA NA NA NA NA NA -NDST3--PRSS12 BS_61E80SD6 1.20041109302766 13.6343768539339 NA NA no change differentially expressed NA NA 4:118251569 4:118283111 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_INVERSION:+:-:[21390]],duplication/3'-3' NDST3 NA PRSS12 NA NA NA NA NA NA -NDST3--PRSS12 BS_7G42J2SK -1.56331349092773 10.3040812851879 NA NA no change differentially expressed NA NA 4:118251569 4:118338314 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_INVERSION:+:-:[21390]],duplication/3'-3' NDST3 NA PRSS12 NA NA NA NA NA NA -NDST3--PRSS12 BS_996ZS2A4 -1.13996270268433 16.8612855472585 NA NA no change differentially expressed NA NA 4:118251569 4:118298938 ARRIBA other 9 3 medium [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_INVERSION:+:-:[21390]],duplication/3'-3' NDST3 NA PRSS12 NA NA NA NA NA NA -NDST3--PRSS12 BS_E054DFJN -1.49623771591438 9.74817796416935 NA NA no change differentially expressed NA NA 4:118251569 4:118331866 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_INVERSION:+:-:[21390]],duplication/3'-3' NDST3 NA PRSS12 NA NA NA NA NA NA -NDST3--PRSS12 BS_QWNBZ9RJ 1.59397232689501 8.40832582178816 NA NA no change differentially expressed NA NA 4:118251569 4:118283111 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_INVERSION:+:-:[21390]],duplication/3'-3' NDST3 NA PRSS12 NA NA NA NA NA NA -NDST3--PRSS12 BS_XJTW0P8P 2.34439523537547 7.10929051218486 NA NA differentially expressed differentially expressed NA NA 4:118251569 4:118331866 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_INVERSION:+:-:[21390]],duplication/3'-3' NDST3 NA PRSS12 NA NA NA NA NA NA -NDST4--NDST4 BS_ERWT0ZWE 22.3496309495519 22.3496309495519 NA NA differentially expressed differentially expressed NA NA 4:114839378 4:114870950 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.29Mb]],duplication/non-canonical_splicing NDST4 NA NDST4 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -NDUFA10--FARP2 BS_RRAEQZ97 -1.08345787414709 1.52251205648497 NA NA no change no change NA NA 2:239990074 2:241436481 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr2:1.33Mb]],inversion NDUFA10 NA FARP2 NA NA NA NA NA NA -NDUFA3--VSTM1 BS_N6N147BY 0.23367645422514 2.30821270325387 NA NA no change differentially expressed NA NA 19:54106011 19:54042369 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr19:0.04Mb],LOCAL_INVERSION:+:-:[38775]],inversion NDUFA3 NA VSTM1 NA NA NA NA NA NA -NDUFA3--VSTM1 BS_N6N147BY 0.23367645422514 2.30821270325387 NA NA no change differentially expressed NA NA 19:54103188 19:54042369 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr19:0.04Mb],LOCAL_INVERSION:+:-:[38775]],inversion NDUFA3 NA VSTM1 NA NA NA NA NA NA -NDUFA3--VSTM1 BS_N6N147BY 0.23367645422514 2.30821270325387 NA NA no change differentially expressed NA NA 19:54102888 19:54042369 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr19:0.04Mb],LOCAL_INVERSION:+:-:[38775]],inversion NDUFA3 NA VSTM1 NA NA NA NA NA NA -NDUFA5--CDH10(81297)/AC091893.1(23099) BS_6JHXXVR7 0.309419354024423 -2.71137582563851 NA NA no change differentially expressed NA NA 7:123550470 5:24726275 ARRIBA frameshift 5 0 medium [],translocation NDUFA5 NA CDH10 AC091893.1 NA CosmicCensus, Oncogene NA NA NA -NDUFA9--AL365500.1(136907)/AL355300.1(53216) BS_A0DYVX9J 4.27747258516059 NA NA NA differentially expressed NA NA NA 12:4669817 10:36035870 ARRIBA frameshift 3 1 medium [],translocation NDUFA9 NA AL365500.1 AL355300.1 NA NA NA NA NA -NDUFA9--TMTC1 BS_49FQXT2E 2.97769958376988 2.24648319239639 NA NA differentially expressed differentially expressed NA NA 12:4669817 12:29512120 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr12:24.81Mb]],inversion NDUFA9 NA TMTC1 NA NA NA NA NA NA -NDUFAF2--ZSWIM6 BS_31TF0P1N -1.60812419429209 2.96237407675015 NA NA no change differentially expressed NA NA 5:61073214 5:61521263 ARRIBA in-frame 3 0 high [FA_CancerSupp,INTRACHROMOSOMAL[chr5:0.18Mb]],deletion NDUFAF2 NA ZSWIM6 NA NA NA NA NA NA -NDUFS4--AC026415.1(36914)/AC010451.3(56091) BS_B1C6GZ84 -1.09837161825321 NA NA NA no change NA NA NA 5:53658624 5:4911673 ARRIBA frameshift 3 0 high [],duplication NDUFS4 NA AC026415.1 AC010451.3 NA NA NA NA NA -NDUFS4--AC026415.1(61179)/AC010451.3(31826) BS_B1C6GZ84 -1.09837161825321 NA NA NA no change NA NA NA 5:53658624 5:4935938 ARRIBA frameshift 2 1 high [],duplication NDUFS4 NA AC026415.1 AC010451.3 NA NA NA NA NA -NDUFS4--UBE2G2 BS_B1C6GZ84 -1.09837161825321 0.827965393065164 NA NA no change no change NA NA 5:53560760 21:44788095 ARRIBA frameshift 12 0 medium [INTERCHROMOSOMAL[chr5--chr21]],translocation NDUFS4 NA UBE2G2 NA NA NA NA NA NA -NDUFS4--UBE2G2 BS_B1C6GZ84 -1.09837161825321 0.827965393065164 NA NA no change no change NA NA 5:53560760 21:44777417 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr5--chr21]],translocation NDUFS4 NA UBE2G2 NA NA NA NA NA NA -NECTIN2--SEMA4B BS_AZN38B7V NA 1.78306566574484 NA NA NA no change NA NA 19:44846613 15:90201458 ARRIBA frameshift 17 0 high [INTERCHROMOSOMAL[chr19--chr15]],translocation NECTIN2 NA SEMA4B NA NA Oncogene NA NA NA -NECTIN2--SEMA4B BS_AZN38B7V NA 1.78306566574484 NA NA NA no change NA NA 19:44846613 15:90217439 ARRIBA in-frame 5 0 high [INTERCHROMOSOMAL[chr19--chr15]],translocation NECTIN2 NA SEMA4B NA NA Oncogene NA NA NA -NEDD1--CFAP54 BS_0BXY0F9N 3.22861322283294 10.4086837712816 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96518272 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_0GDJQANN 4.7505571111418 12.3724789375357 NA NA differentially expressed differentially expressed NA NA 12:96917737 12:96547902 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_34201DKZ 3.15851240876241 11.4136148435589 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_3X9WMZGJ 4.93376909062564 11.8929155209737 NA NA differentially expressed differentially expressed NA NA 12:96912817 12:96764151 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_3X9WMZGJ 4.93376909062564 11.8929155209737 NA NA differentially expressed differentially expressed NA NA 12:96912817 12:96875118 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_49BQS7Z6 4.46088838923195 9.89297019467614 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96764069 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_4SCWT0FX 4.94152182388585 7.58400336517527 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_53M8PP88 5.20619944096426 10.9000331723387 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_6MZ7FRZH 6.74051733441593 11.7829238436903 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_6MZ7FRZH 6.74051733441593 11.7829238436903 NA NA differentially expressed differentially expressed NA NA 12:96945849 12:96875118 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_6MZ7FRZH 6.74051733441593 11.7829238436903 NA NA differentially expressed differentially expressed NA NA 12:96912817 12:96875118 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_7G42J2SK 7.10363543059197 14.6183879117967 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 16 2 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_7G42J2SK 7.10363543059197 14.6183879117967 NA NA differentially expressed differentially expressed NA NA 12:96937393 12:96764151 ARRIBA frameshift 1 3 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_7G42J2SK 7.10363543059197 14.6183879117967 NA NA differentially expressed differentially expressed NA NA 12:96920125 12:96554182 ARRIBA in-frame 1 3 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_7G42J2SK 7.10363543059197 14.6183879117967 NA NA differentially expressed differentially expressed NA NA 12:96937393 12:96644178 ARRIBA frameshift 1 3 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_7G42J2SK 7.10363543059197 14.6183879117967 NA NA differentially expressed differentially expressed NA NA 12:96940537 12:96693722 ARRIBA frameshift 1 3 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_7G42J2SK 7.10363543059197 14.6183879117967 NA NA differentially expressed differentially expressed NA NA 12:96940537 12:96784717 ARRIBA in-frame 1 3 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_7G42J2SK 7.10363543059197 14.6183879117967 NA NA differentially expressed differentially expressed NA NA 12:96920125 12:96784717 ARRIBA frameshift 1 3 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_7G42J2SK 7.10363543059197 14.6183879117967 NA NA differentially expressed differentially expressed NA NA 12:96920125 12:96786675 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_7G42J2SK 7.10363543059197 14.6183879117967 NA NA differentially expressed differentially expressed NA NA 12:96940537 12:96792329 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_8Q77HZ4R 6.7149190688643 14.3226580736255 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 8 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_8Q77HZ4R 6.7149190688643 14.3226580736255 NA NA differentially expressed differentially expressed NA NA 12:96920125 12:96764151 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_8Q77HZ4R 6.7149190688643 14.3226580736255 NA NA differentially expressed differentially expressed NA NA 12:96920125 12:96860819 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_BJDNWMJH 7.66288151421513 10.4155036669106 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_CZ3ER8DY 6.72890490947141 10.8534415360188 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_CZ3ER8DY 6.72890490947141 10.8534415360188 NA NA differentially expressed differentially expressed NA NA 12:96937393 12:96784717 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_CZ3ER8DY 6.72890490947141 10.8534415360188 NA NA differentially expressed differentially expressed NA NA 12:96920125 12:96817775 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_E4F1D721 6.95196746611672 10.2571393955358 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 10 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_F6Z5HFWH 3.40697801842057 10.0505148930563 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 10 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_F9WKPDFG 2.20252681274784 9.87328826987295 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_G63HYD6N 5.45564698399353 9.73043894150968 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_G63HYD6N 5.45564698399353 9.73043894150968 NA NA differentially expressed differentially expressed NA NA 12:96920125 12:96535515 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_G63HYD6N 5.45564698399353 9.73043894150968 NA NA differentially expressed differentially expressed NA NA 12:96943762 12:96589427 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_GMDQK06Q 3.77119308749657 7.74218931052206 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_GV3NZ9QD 4.14026882278836 9.19244494239172 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_HC44ZA0V 6.54258978040665 15.3309264564528 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_HC44ZA0V 6.54258978040665 15.3309264564528 NA NA differentially expressed differentially expressed NA NA 12:96920125 12:96589427 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_JX449BF5 6.33542733195278 16.5819042865234 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_KX6J8TRK 3.57099301385005 7.52848577692806 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_KX6J8TRK 3.57099301385005 7.52848577692806 NA NA differentially expressed differentially expressed NA NA 12:96920125 12:96875118 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_M1T1K5WV 4.60018650502151 11.8319571394712 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_MT15SGJN 4.61296652051249 9.39115296064844 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_N5DVEJXT 4.46532622710711 11.242090552785 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_N8J1DP02 3.32814075970659 7.03436477624452 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_N8J1DP02 3.32814075970659 7.03436477624452 NA NA differentially expressed differentially expressed NA NA 12:96920125 12:96792329 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_RHD7XPNP 3.86716561786706 12.5206815191018 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 10 2 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_SFKZSJN1 3.17136264427533 5.853034251674 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_SFKZSJN1 3.17136264427533 5.853034251674 NA NA differentially expressed differentially expressed NA NA 12:96920125 12:96765077 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_TBWYAFSM 8.78134853122886 8.86234782956197 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_TBWYAFSM 8.78134853122886 8.86234782956197 NA NA differentially expressed differentially expressed NA NA 12:96920125 12:96540837 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_TBWYAFSM 8.78134853122886 8.86234782956197 NA NA differentially expressed differentially expressed NA NA 12:96920125 12:96764151 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_TBWYAFSM 8.78134853122886 8.86234782956197 NA NA differentially expressed differentially expressed NA NA 12:96920125 12:96875118 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_TNRHHYNC 3.89336521964449 12.0981221388 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_TNRHHYNC 3.89336521964449 12.0981221388 NA NA differentially expressed differentially expressed NA NA 12:96920125 12:96860819 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_WYERXS4G 5.40172683897053 13.5234315104232 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_WYERXS4G 5.40172683897053 13.5234315104232 NA NA differentially expressed differentially expressed NA NA 12:96912817 12:96792329 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_WYG77VVP 3.7819872817742 7.20518377849014 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD1--CFAP54 BS_ZN8136D9 4.98768183687426 12.3057811372831 NA NA differentially expressed differentially expressed NA NA 12:96909895 12:96786797 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA -NEDD9--TBC1D2B BS_M9C4RY4P 0.670455120146561 2.84617296161663 NA NA no change differentially expressed NA NA 6:11187412 15:77999191 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr6--chr15]],translocation NEDD9 NA TBC1D2B NA NA NA NA NA NA -NEK1--AC007741.1 BS_P9JP6JFA -1.02898537037948 NA NA NA no change NA NA NA 4:169441363 2:65790085 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr4--chr2]],translocation/5'-5' NEK1 NA AC007741.1 NA Kinase, Kinase NA NA NA NA -NEK1--NEK1 BS_1EBQ3T20 0.597899965882944 0.597899965882944 NA NA no change no change NA NA 4:169576928 4:169612143 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.22Mb]],duplication/non-canonical_splicing NEK1 NA NEK1 NA Kinase, Kinase Kinase, Kinase NA NA NA -NEK10--NEK10 BS_7G42J2SK 3.50338079453899 3.50338079453899 NA NA differentially expressed differentially expressed NA NA 3:27115940 3:27141582 ARRIBA frameshift 9 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr3:0.26Mb]],duplication/non-canonical_splicing NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA -NEK10--NEK10 BS_CXVJK2FY 2.43971876356177 2.43971876356177 NA NA differentially expressed differentially expressed NA NA 3:27115940 3:27141582 ARRIBA frameshift 2 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr3:0.26Mb]],duplication/non-canonical_splicing NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA -NEK10--NEK10 BS_CZ3ER8DY 3.16792986366846 3.16792986366846 NA NA differentially expressed differentially expressed NA NA 3:27115940 3:27141582 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr3:0.26Mb]],duplication/non-canonical_splicing NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA -NEK10--NEK10 BS_EK5PCKY0 4.02809629040949 4.02809629040949 NA NA differentially expressed differentially expressed NA NA 3:27115940 3:27141582 ARRIBA frameshift 10 2 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr3:0.26Mb]],duplication/non-canonical_splicing NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA -NEK10--NEK10 BS_ERWT0ZWE 1.35013869115848 1.35013869115848 NA NA no change no change NA NA 3:27115940 3:27141582 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr3:0.26Mb]],duplication/non-canonical_splicing NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA -NEK10--NEK10 BS_NGHK9RZP 4.0458007737382 4.0458007737382 NA NA differentially expressed differentially expressed NA NA 3:27115940 3:27141582 ARRIBA frameshift 11 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr3:0.26Mb]],duplication/non-canonical_splicing NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA -NEK10--NEK10 BS_P0W5VJH4 3.6853150669116 3.6853150669116 NA NA differentially expressed differentially expressed NA NA 3:27256296 3:27304971 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr3:0.26Mb]],duplication/non-canonical_splicing NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA -NEK10--NEK10 BS_XF0ZX2B3 2.38712282114093 2.38712282114093 NA NA differentially expressed differentially expressed NA NA 3:27115940 3:27141582 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr3:0.26Mb]],duplication/non-canonical_splicing NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA -NEK11--TMEM108 BS_99B1XRZQ 3.60573534242749 1.00643608129447 NA NA differentially expressed no change NA NA 3:131273574 3:133045902 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:1.69Mb]],deletion NEK11 NA TMEM108 NA Kinase, Kinase NA NA NA NA -NEK5--AC090001.1 BS_AGTPCRR4 3.57986456881781 NA NA NA differentially expressed NA NA NA 13:52123838 12:95842555 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr13--chr12]],translocation NEK5 NA AC090001.1 NA Kinase, Kinase NA NA NA NA -NEK5--AC090001.1 BS_B741RZY9 6.09521353286245 NA NA NA differentially expressed NA NA NA 13:52123838 12:95842555 ARRIBA frameshift 7 0 low [INTERCHROMOSOMAL[chr13--chr12]],translocation NEK5 NA AC090001.1 NA Kinase, Kinase NA NA NA NA -NEK5--AC090001.1 BS_FAVRBEW7 6.60142921668522 NA NA NA differentially expressed NA NA NA 13:52123838 12:95842555 ARRIBA frameshift 6 1 medium [INTERCHROMOSOMAL[chr13--chr12]],translocation NEK5 NA AC090001.1 NA Kinase, Kinase NA NA NA NA -NEK5--AC090001.1 BS_P78SMRBS 3.96666437838803 NA NA NA differentially expressed NA NA NA 13:52123838 12:95842555 ARRIBA frameshift 3 0 low [INTERCHROMOSOMAL[chr13--chr12]],translocation NEK5 NA AC090001.1 NA Kinase, Kinase NA NA NA NA -NEK6--SCAI BS_0XEG6SNV 2.74457898163234 1.08553623491287 NA NA differentially expressed no change NA NA 9:124352343 9:125129215 ARRIBA other 7 0 medium [INTRACHROMOSOMAL[chr9:0.59Mb]],inversion NEK6 NA SCAI NA Kinase, Kinase NA NA NA NA -NEK7--AL122019.1 BS_TRKH2SPE 0.753570283612584 NA NA NA no change NA NA NA 1:198157276 1:177576950 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr1:20.56Mb]],inversion NEK7 NA AL122019.1 NA Kinase, Kinase NA NA NA NA -NEK7--AL122019.1 BS_TRKH2SPE 0.753570283612584 NA NA NA no change NA NA NA 1:198157276 1:177393788 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr1:20.56Mb]],inversion NEK7 NA AL122019.1 NA Kinase, Kinase NA NA NA NA -NEK7--AL122019.1 BS_TRKH2SPE 0.753570283612584 NA NA NA no change NA NA NA 1:198157276 1:177573784 ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr1:20.56Mb]],inversion NEK7 NA AL122019.1 NA Kinase, Kinase NA NA NA NA -NELL1--AC044839.1 BS_MN5XVP5A 5.29716800477668 NA NA NA differentially expressed NA NA NA 11:21370948 11:45727498 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr11:24.15Mb]],inversion/3'-3' NELL1 NA AC044839.1 NA NA NA NA NA NA -NELL1--AC044839.2 BS_MN5XVP5A 5.29716800477668 NA NA NA differentially expressed NA NA NA 11:21370948 11:45751208 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr11:24.18Mb]],inversion NELL1 NA AC044839.2 NA NA NA NA NA NA -NELL1--AC044839.2 BS_RCCN63K6 4.17996608774188 NA NA NA differentially expressed NA NA NA 11:21370948 11:45751208 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr11:24.18Mb]],inversion NELL1 NA AC044839.2 NA NA NA NA NA NA -NELL1--LRRC4C BS_SD8YBRBR 1.89251077097145 -0.25596099401292 NA NA no change no change NA NA 11:21113714 11:40319721 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr11:18.54Mb]],inversion NELL1 NA LRRC4C NA NA NA NA NA NA -NELL1--NELL1 BS_044XZ8ST 1.3591225375057 1.3591225375057 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_0T17SY47 -0.173742620427377 -0.173742620427377 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_1G3WYEN3 1.37795676500797 1.37795676500797 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_1T19NFJ8 0.560338291925243 0.560338291925243 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_258RRGDM 1.04497073777169 1.04497073777169 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_2AR3AP0N 0.836578047499166 0.836578047499166 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_2XD3MNKD 0.146416197472127 0.146416197472127 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_37GTVG4N 3.55064326479597 3.55064326479597 NA NA differentially expressed differentially expressed NA NA 11:20960560 11:20937786 ARRIBA in-frame 27 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_398KYV92 0.858632449776593 0.858632449776593 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_39CGACC7 0.104340776235874 0.104340776235874 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_4W1DBAN4 2.31916440622099 2.31916440622099 NA NA differentially expressed differentially expressed NA NA 11:20960560 11:20937786 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_5K3R0F5D 2.32385512539302 2.32385512539302 NA NA differentially expressed differentially expressed NA NA 11:20960560 11:20937786 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_680K119G 1.64706086880608 1.64706086880608 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_6MY8W3H0 1.87311550538527 1.87311550538527 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 15 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_7B89YR6K 1.19403677803563 1.19403677803563 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_8MA5B8Y9 0.424563534994315 0.424563534994315 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_90B22NGP 1.191895284571 1.191895284571 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_912NX4Y0 0.626727219279549 0.626727219279549 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_92VDQ0NE 1.54502056549384 1.54502056549384 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 21 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_AMQGM1V9 1.6729323540977 1.6729323540977 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_BSV07M7Z 1.48408924856409 1.48408924856409 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_C0XFDP38 0.490560739759914 0.490560739759914 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_CREQ97QC 1.50299687388202 1.50299687388202 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_DGTPWJ59 4.80421438212554 4.80421438212554 NA NA differentially expressed differentially expressed NA NA 11:20960560 11:20937786 ARRIBA in-frame 34 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_E4GC9EXR 0.0609294063856057 0.0609294063856057 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_EF775B3K 1.4401194374981 1.4401194374981 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_HCP5C912 1.83079589389965 1.83079589389965 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 19 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_JXNZYGCR 1.34386610812529 1.34386610812529 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_K5802F84 1.72760382022786 1.72760382022786 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 15 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_KPT2WPHW 2.15881919637829 2.15881919637829 NA NA differentially expressed differentially expressed NA NA 11:20960560 11:20937786 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_M1PVEHCM 1.94168747598733 1.94168747598733 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_M4NVX721 1.2990311636564 1.2990311636564 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_N6NE6B3W 0.587281888795729 0.587281888795729 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_NT9NZYFD 0.753509669085756 0.753509669085756 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_NVKGSMXS 2.48365568389992 2.48365568389992 NA NA differentially expressed differentially expressed NA NA 11:20960560 11:20937786 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_PQ7CQFYR 1.11247883995931 1.11247883995931 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_QC3XCE6X 1.4419056471547 1.4419056471547 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_QNAQGAV6 0.831008413331144 0.831008413331144 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_QV51J756 1.5165854905405 1.5165854905405 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_QWNBZ9RJ 3.14411026835566 3.14411026835566 NA NA differentially expressed differentially expressed NA NA 11:20960560 11:20937786 ARRIBA in-frame 21 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_TG93XC55 2.58867180598726 2.58867180598726 NA NA differentially expressed differentially expressed NA NA 11:20960560 11:20937786 ARRIBA in-frame 21 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_VNE0ZPBS 1.81594066010551 1.81594066010551 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_WCRKYV0T 1.93299012446098 1.93299012446098 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_X4X1SFSE 1.51489428030922 1.51489428030922 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_XJTW0P8P 1.42574513116184 1.42574513116184 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_YB2RXRHT 1.57611648691341 1.57611648691341 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_ZH1FBX50 1.85608082136379 1.85608082136379 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL1--NELL1 BS_ZR96A4FH 1.90019249509501 1.90019249509501 NA NA no change no change NA NA 11:20960560 11:20937786 ARRIBA in-frame 30 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA -NELL2--NELL2 BS_0T17SY47 -0.222757040587544 -0.222757040587544 NA NA no change no change NA NA 12:44665484 12:44714741 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_1T19NFJ8 0.592528379130812 0.592528379130812 NA NA no change no change NA NA 12:44665484 12:44714741 ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_27QE6BV7 0.915602094735693 0.915602094735693 NA NA no change no change NA NA 12:44665484 12:44714741 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_2ADZNNV4 -0.363717555690222 -0.363717555690222 NA NA no change no change NA NA 12:44815986 12:44881839 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_2XD3MNKD -0.725895620528786 -0.725895620528786 NA NA no change no change NA NA 12:44665484 12:44714741 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_398KYV92 0.650909975728664 0.650909975728664 NA NA no change no change NA NA 12:44665484 12:44714741 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_39CGACC7 0.00206868021622877 0.00206868021622877 NA NA no change no change NA NA 12:44665484 12:44714741 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_9F09XV62 0.30413150972865 0.30413150972865 NA NA no change no change NA NA 12:44665484 12:44714741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_ERJAJ0KA -0.166193859057824 -0.166193859057824 NA NA no change no change NA NA 12:44665484 12:44714741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_HCP5C912 1.18342586638023 1.18342586638023 NA NA no change no change NA NA 12:44665484 12:44714741 ARRIBA in-frame 19 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_JXNZYGCR -0.554619998302027 -0.554619998302027 NA NA no change no change NA NA 12:44665484 12:44714741 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_KPT2WPHW 1.42101296508265 1.42101296508265 NA NA no change no change NA NA 12:44665484 12:44714741 ARRIBA in-frame 12 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_QHS3V0GP -1.25517387959249 -1.25517387959249 NA NA no change no change NA NA 12:44665484 12:44714741 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_TNRHHYNC -0.538291527228859 -0.538291527228859 NA NA no change no change NA NA 12:44607169 12:44714741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_VR7FR1NE -0.335353418279544 -0.335353418279544 NA NA no change no change NA NA 12:44815986 12:44881839 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_VTJ9ESSV 0.0316423712718261 0.0316423712718261 NA NA no change no change NA NA 12:44665484 12:44714741 ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_WRQHPSXQ -0.168458011003392 -0.168458011003392 NA NA no change no change NA NA 12:44607169 12:44875900 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_YMAJC22S 0.831828266352201 0.831828266352201 NA NA no change no change NA NA 12:44665484 12:44714741 ARRIBA in-frame 12 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NELL2--NELL2 BS_ZR96A4FH 1.00405473863524 1.00405473863524 NA NA no change no change NA NA 12:44665484 12:44714741 ARRIBA in-frame 20 4 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA -NEO1--AL162373.1(39490)/MOB1AP1(91977) BS_QC3XCE6X 1.63382233395879 NA NA -0.0502950901914153 no change NA NA no change 15:73178427 13:85877022 ARRIBA frameshift 3 0 medium [],translocation NEO1 NA AL162373.1 MOB1AP1 NA NA NA NA NA -NETO1--DYM BS_QWTE1CWR 1.29755580976325 2.37531674141038 NA NA no change differentially expressed NA NA 18:72858826 18:49379758 ARRIBA in-frame 5 2 high [INTRACHROMOSOMAL[chr18:23.28Mb]],deletion NETO1 NA DYM NA NA Oncogene NA NA NA -NETO1--NETO1 BS_6T4JGBGY 0.693920547347338 0.693920547347338 NA NA no change no change NA NA 18:72750062 18:72865241 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.13Mb]],duplication/non-canonical_splicing NETO1 NA NETO1 NA NA NA NA NA NA -NF1--ABR BS_6JHXXVR7 1.18344090191443 -1.26404565805495 NA NA no change no change NA NA 17:31265339 17:1088610 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr17:29.87Mb]],duplication/5'-5' NF1 NA ABR NA TumorSuppressorGene, CosmicCensus, Oncogene Oncogene NA NA NA -NF1--AC007923.1(17923)/AC004253.2(43760) BS_HA20Y4XY 2.58364645951573 NA NA NA differentially expressed NA NA NA 17:31265339 17:31786971 ARRIBA frameshift 2 0 low [],deletion NF1 NA AC007923.1 AC004253.2 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF1--AC138207.8 BS_4SCWT0FX 3.38077628702677 NA NA NA differentially expressed NA NA NA 17:31169997 17:31071912 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr17:0.00Mb],LOCAL_REARRANGEMENT:+:[1800]],duplication NF1 NA AC138207.8 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF1--AC138207.8 BS_5AF6ZNJF 3.08982308106416 NA NA NA differentially expressed NA NA NA 17:31163376 17:31071912 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr17:0.00Mb],LOCAL_REARRANGEMENT:+:[1800]],duplication NF1 NA AC138207.8 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF1--ACACB BS_1A6MQ9ZA 0.540535682527793 -0.152660331336249 NA NA no change no change NA NA 17:31253000 12:109245626 ARRIBA in-frame 8 3 high [INTERCHROMOSOMAL[chr17--chr12]],translocation NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF1--ACACB BS_1A6MQ9ZA 0.540535682527793 -0.152660331336249 NA NA no change no change NA NA 17:31249119 12:109245626 ARRIBA in-frame 3 1 high [INTERCHROMOSOMAL[chr17--chr12]],translocation NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF1--ACACB BS_40MP5BWR 1.14501883164291 1.25872867571542 NA NA no change no change NA NA 17:31253000 12:109245626 ARRIBA in-frame 8 3 high [INTERCHROMOSOMAL[chr17--chr12]],translocation NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF1--ACACB BS_40MP5BWR 1.14501883164291 1.25872867571542 NA NA no change no change NA NA 17:31249119 12:109245626 ARRIBA in-frame 2 1 high [INTERCHROMOSOMAL[chr17--chr12]],translocation NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF1--MYO1D BS_5P3CZQV8 0.103940331026975 0.776953589093701 NA NA no change no change NA NA 17:31206371 17:32494915 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr17:1.11Mb]],inversion NF1 NA MYO1D NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--AC069503.2 BS_8NY9J9NQ -2.46733282118206 NA NA NA differentially expressed NA NA NA 22:29604112 12:121894739 ARRIBA in-frame 11 0 high [INTERCHROMOSOMAL[chr22--chr12]],translocation NF2 NA AC069503.2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--AC069503.2 BS_8NY9J9NQ -2.46733282118206 NA NA NA differentially expressed NA NA NA 22:29604112 12:121903006 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr22--chr12]],translocation NF2 NA AC069503.2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--AC069503.3(14114)/PSMD9(280) BS_8NY9J9NQ -2.46733282118206 NA NA 2.51336990799559 differentially expressed NA NA differentially expressed 22:29604112 12:121888451 ARRIBA frameshift 1 0 low [],translocation NF2 NA AC069503.3 PSMD9 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--ADCY8 BS_X2QTK3QD -2.60925502926917 -3.76065874824775 NA NA differentially expressed differentially expressed NA NA 22:29604112 8:130850964 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr22--chr8]],translocation/5'-5' NF2 NA ADCY8 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--ADCY8(34695)/AC087341.1(53267) BS_X2QTK3QD -2.60925502926917 -3.76065874824775 NA NA differentially expressed differentially expressed NA NA 22:29604112 8:131077121 ARRIBA frameshift 2 0 high [],translocation NF2 NA ADCY8 AC087341.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--LINC01638(2353)/AL020994.3(49160) BS_THSPSG2Z 0.152657607757932 NA NA NA no change NA NA NA 22:29604112 22:27227080 ARRIBA frameshift 3 0 high [],inversion NF2 NA LINC01638 AL020994.3 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--MAPK8IP2(6860)/ARSA(1913) BS_1HQ76V6D 0.096097503423532 -2.66173301379836 NA -1.86471156036964 no change differentially expressed NA no change 22:29663656 22:50620841 ARRIBA other 3 1 medium [],deletion NF2 NA MAPK8IP2 ARSA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--PISD BS_70FFPA51 -2.68013287136074 -0.757410094020417 NA NA differentially expressed no change NA NA 22:29655676 22:31626016 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr22:1.92Mb]],inversion NF2 NA PISD NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--PISD BS_70FFPA51 -2.68013287136074 -0.757410094020417 NA NA differentially expressed no change NA NA 22:29655676 22:31623849 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr22:1.92Mb]],inversion NF2 NA PISD NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--POLR2F BS_1HQ76V6D 0.096097503423532 -2.77556285705686 NA NA no change differentially expressed NA NA 22:29642285 22:37967099 ARRIBA frameshift 30 5 high [INTRACHROMOSOMAL[chr22:8.25Mb]],deletion NF2 NA POLR2F NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--PSMD9 BS_8NY9J9NQ -2.46733282118206 2.51336990799559 NA NA differentially expressed differentially expressed NA NA 22:29604112 12:121894739 ARRIBA in-frame 14 0 high [INTERCHROMOSOMAL[chr22--chr12]],translocation NF2 NA PSMD9 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--PSMD9 BS_8NY9J9NQ -2.46733282118206 2.51336990799559 NA NA differentially expressed differentially expressed NA NA 22:29604112 12:121903006 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr22--chr12]],translocation NF2 NA PSMD9 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--TTC28 BS_S71RJ8DH -2.36744887126932 10.504474473101 NA NA differentially expressed differentially expressed NA NA 22:29604112 22:28014392 ARRIBA frameshift 17 0 high [INTRACHROMOSOMAL[chr22:0.92Mb]],inversion NF2 NA TTC28 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NFAT5--CYB5B BS_052PZFMK 2.30873907226901 1.85883747757674 NA NA differentially expressed no change NA NA 16:69566374 16:69447150 ARRIBA frameshift 12 2 high [ChimerSeq,CCLE,FA_CancerSupp,INTRACHROMOSOMAL[chr16:0.10Mb],LOCAL_REARRANGEMENT:+:[98828]],duplication NFAT5 NA CYB5B NA Oncogene, TranscriptionFactor NA NA NA NA -NFAT5--CYB5B BS_052PZFMK 2.30873907226901 1.85883747757674 NA NA differentially expressed no change NA NA 16:69568548 16:69447150 ARRIBA frameshift 7 3 high [ChimerSeq,CCLE,FA_CancerSupp,INTRACHROMOSOMAL[chr16:0.10Mb],LOCAL_REARRANGEMENT:+:[98828]],duplication NFAT5 NA CYB5B NA Oncogene, TranscriptionFactor NA NA NA NA -NFIA--PATJ BS_NH7K4CD9 5.09510354939009 NA NA NA differentially expressed NA NA NA 1:61359274 1:61805476 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],inversion/3'-3' NFIA NA PATJ NA TranscriptionFactor Oncogene NA NA NA -NFIA--TM2D1 BS_NH7K4CD9 5.09510354939009 -1.02163447774748 NA NA differentially expressed no change NA NA 1:61359274 1:61709437 ARRIBA in-frame 6 0 high [INTRACHROMOSOMAL[chr1:0.22Mb]],inversion NFIA NA TM2D1 NA TranscriptionFactor NA NA NA NA -NFIB--FOCAD BS_B3M5SGPA 3.19677770454228 -0.696274590358608 NA NA differentially expressed no change NA NA 9:14306989 9:20944296 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:6.26Mb]],duplication/5'-5' NFIB NA FOCAD NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -NFIB--NFIB BS_J71N7D09 7.94039610109147 7.94039610109147 NA NA differentially expressed differentially expressed NA NA 9:14306989 9:14307520 ARRIBA frameshift 28 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.32Mb]],duplication/non-canonical_splicing NFIB NA NFIB NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -NFKB1--CELF1 BS_4QW2S1Q8 1.63688914409482 1.39047031964196 NA NA no change no change NA NA 4:102501788 11:47511702 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr4--chr11]],translocation/5'-5' NFKB1 NA CELF1 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA -NFKBIE--GPR156 BS_6JHXXVR7 2.90186314815711 -0.981378102982626 NA NA differentially expressed no change NA NA 6:44258977 3:120200166 ARRIBA frameshift 56 0 low [INTERCHROMOSOMAL[chr6--chr3]],translocation NFKBIE NA GPR156 NA CosmicCensus, Oncogene NA NA NA NA -NFKBIE--GPR156 BS_KE56MMY0 2.64755508319488 -0.891553571212849 NA NA differentially expressed no change NA NA 6:44258977 3:120200166 ARRIBA frameshift 5 0 low [INTERCHROMOSOMAL[chr6--chr3]],translocation NFKBIE NA GPR156 NA CosmicCensus, Oncogene NA NA NA NA -NFKBIE--RNA5SP178(22358)/MARCH11(11425) BS_6JHXXVR7 2.90186314815711 NA NA -2.1297793447927 differentially expressed NA NA differentially expressed 6:44260043 5:16055714 ARRIBA frameshift 3 0 medium [],translocation NFKBIE NA RNA5SP178 MARCH11 CosmicCensus, Oncogene NA NA NA NA -NFKBIE--ZBTB9(32605)/GGNBP1(49893) BS_6JHXXVR7 2.90186314815711 4.80913589550387 NA -0.421942346900392 differentially expressed differentially expressed NA no change 6:44260043 6:33490153 ARRIBA frameshift 6 1 high [],inversion NFKBIE NA ZBTB9 GGNBP1 CosmicCensus, Oncogene TranscriptionFactor NA NA NA -NFS1--KRT8P17(4562624)/BX322784.1(230493) BS_6VPKXXMR -1.81720660637132 -0.0679791692183885 NA NA no change no change NA NA 20:35680737 X:62548757 ARRIBA frameshift 1 1 high [],translocation NFS1 NA KRT8P17 BX322784.1 NA NA NA NA NA -NGEF--CSRNP3 BS_81SP2HX4 0.535806713362737 1.36429448651205 NA NA no change no change NA NA 2:232920284 2:165686205 ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr2:67.19Mb]],inversion NGEF NA CSRNP3 NA NA TranscriptionFactor NA NA NA -NGEF--CSRNP3(50747)/GALNT3(7437) BS_81SP2HX4 0.535806713362737 1.36429448651205 NA -0.641985299195113 no change no change NA no change 2:232920284 2:165740154 ARRIBA frameshift 9 2 high [],inversion NGEF NA CSRNP3 GALNT3 NA TranscriptionFactor NA NA NA -NGRN--OR7E19P BS_AZN38B7V -1.3708443411663 13.3658346723159 NA NA no change differentially expressed NA NA 15:90266398 19:9266328 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr15--chr19]],translocation NGRN NA OR7E19P NA NA NA NA NA NA -NHSL1--HMGB1P13(15079)/AL137783.1(7986) BS_3F4FQJMR 4.7543196297105 4.53186499484781 NA NA differentially expressed differentially expressed NA NA 6:138571710 6:132883938 ARRIBA frameshift 3 0 high [],inversion NHSL1 NA HMGB1P13 AL137783.1 NA NA NA NA NA -NHSL1--HMGB1P13(15079)/AL137783.1(7986) BS_HC44ZA0V 5.70423175952185 4.67519576264299 NA NA differentially expressed differentially expressed NA NA 6:138571710 6:132883938 ARRIBA frameshift 7 0 high [],inversion NHSL1 NA HMGB1P13 AL137783.1 NA NA NA NA NA -NIN--AL133166.1 BS_K17VQECG 3.68704758774643 NA NA NA differentially expressed NA NA NA 14:50763826 14:29381264 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr14:21.34Mb]],deletion NIN NA AL133166.1 NA CosmicCensus, Oncogene NA NA NA NA -NIN--AL359232.1 BS_K17VQECG 3.68704758774643 NA NA NA differentially expressed NA NA NA 14:50763826 14:66257461 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr14:15.38Mb]],duplication NIN NA AL359232.1 NA CosmicCensus, Oncogene NA NA NA NA -NINJ2--AC010880.1 BS_W644VEVE 4.30346219338763 NA NA NA differentially expressed NA NA NA 12:564570 2:16391658 ARRIBA frameshift 10 3 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation/5'-5' NINJ2 NA AC010880.1 NA NA NA NA NA NA -NINJ2--CCND2-AS1 BS_W644VEVE 4.30346219338763 2.35256618193704 NA NA differentially expressed differentially expressed NA NA 12:663328 12:4249193 ARRIBA frameshift 15 0 high [INTRACHROMOSOMAL[chr12:3.58Mb]],duplication NINJ2 NA CCND2-AS1 NA NA Oncogene NA NA NA -NIPAL3--NLGN4X BS_NGHK9RZP -0.659787943475843 0.839118863672812 NA NA no change no change NA NA 1:24464120 X:5872477 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr1--chrX]],translocation/5'-5' NIPAL3 NA NLGN4X NA NA NA NA NA NA -NKX6-1--AC098587.1(49696)/AC098868.1(14054) BS_RXN5T5YT 6.15266461789267 NA NA NA differentially expressed NA NA NA 4:84492407 4:54426448 ARRIBA other 1 1 medium [],inversion NKX6-1 NA AC098587.1 AC098868.1 TranscriptionFactor NA NA NA NA -NLGN1--RPL6P8(36972)/ARL14(54400) BS_FAQQ0GCQ 5.79622382139053 17.0330519919398 NA 1.24783230336617 differentially expressed differentially expressed NA no change 3:173605091 3:160622759 ARRIBA frameshift 3 0 high [],duplication NLGN1 NA RPL6P8 ARL14 NA NA NA NA NA -NLGN4X--MID1 BS_49FQXT2E 5.61050057439909 2.24231717583885 NA NA differentially expressed differentially expressed NA NA X:6226661 X:10495691 ARRIBA other 10 0 high [INTRACHROMOSOMAL[chrX:4.22Mb]],inversion/3'-3' NLGN4X NA MID1 NA NA Oncogene NA NA NA -NLK--MREGP1(5069)/AC024940.5(20908) BS_SD8YBRBR -1.47213808751609 NA NA NA no change NA NA NA 17:28043331 12:31259514 ARRIBA frameshift 2 0 medium [],translocation NLK NA MREGP1 AC024940.5 Kinase, Kinase NA NA NA NA -NLRP1--EMC6 BS_M0QYNVK8 -0.90985045421288 0.0579690492562493 NA NA no change no change NA NA 17:5553386 17:3669098 ARRIBA in-frame 21 2 high [INTRACHROMOSOMAL[chr17:1.83Mb]],inversion NLRP1 NA EMC6 NA NA NA NA NA NA -NLRP1--P2RX5 BS_M0QYNVK8 -0.90985045421288 -2.01654333795326 NA NA no change differentially expressed NA NA 17:5553386 17:3678647 ARRIBA frameshift 8 3 high [INTRACHROMOSOMAL[chr17:1.80Mb]],inversion/5'-5' NLRP1 NA P2RX5 NA NA NA NA NA NA -NLRP1--P2RX5-TAX1BP3 BS_M0QYNVK8 -0.90985045421288 -1.87796779834168 NA NA no change no change NA NA 17:5553386 17:3678647 ARRIBA frameshift 8 3 high [INTRACHROMOSOMAL[chr17:1.80Mb]],inversion/5'-5' NLRP1 NA P2RX5-TAX1BP3 NA NA NA NA NA NA -NLRP1--TAX1BP3 BS_M0QYNVK8 -0.90985045421288 -0.157146679081718 NA NA no change no change NA NA 17:5543707 17:3662962 ARRIBA other 18 0 medium [INTRACHROMOSOMAL[chr17:1.83Mb]],inversion/5'-5' NLRP1 NA TAX1BP3 NA NA NA NA NA NA -NMNAT2--NMNAT2 BS_9DZ253JY -0.980022830221022 -0.980022830221022 NA NA no change no change NA NA 1:183286662 1:183293793 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.17Mb]],duplication/non-canonical_splicing NMNAT2 NA NMNAT2 NA NA NA NA NA NA -NMT1--RPS6KB1 BS_81SP2HX4 1.01186803769751 1.91117123371946 NA NA no change no change NA NA 17:45086652 17:59910562 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr17:14.78Mb]],deletion NMT1 NA RPS6KB1 NA Oncogene Kinase NA NA NA -NMT1--RPS6KB1 BS_W644VEVE 1.14775455252728 2.58226793936485 NA NA no change differentially expressed NA NA 17:45086652 17:59910562 ARRIBA frameshift 12 1 high [INTRACHROMOSOMAL[chr17:14.78Mb]],deletion NMT1 NA RPS6KB1 NA Oncogene Kinase NA NA NA -NMU(118068)/RNU6-276P(43870)--NAV2 BS_FCAKKZ20 3.92222728311882 2.43354468032529 NA NA differentially expressed differentially expressed NA NA 4:55754766 11:20077552 ARRIBA other 2 0 low [],translocation NMU RNU6-276P NAV2 NA NA NA NA NA NA -NOA1--NCOA1 BS_Q9V7A95C 0.185793201630566 2.88133428219589 NA NA no change differentially expressed NA NA 4:56966796 2:24643966 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr4--chr2]],translocation/3'-3' NOA1 NA NCOA1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -NOC4L--PNCK BS_KVNGNETA -0.206316822968886 -0.0612253832216984 NA NA no change no change NA NA 12:132148895 X:153673078 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr12--chrX]],translocation NOC4L NA PNCK NA NA Kinase NA NA NA -NOD1--AC009500.1(47188)/AC004852.2(96000) BS_593HEWBF 2.53267550300801 NA NA NA differentially expressed NA NA NA 7:30435998 7:8986557 ARRIBA frameshift 2 1 high [],deletion NOD1 NA AC009500.1 AC004852.2 Oncogene NA NA NA NA -NOL10--NBAS BS_H4B5Y6S0 2.00940554760353 0.325607875338421 NA NA differentially expressed no change NA NA 2:10684567 2:15402301 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr2:4.48Mb]],duplication NOL10 NA NBAS NA NA NA NA NA NA -NOL4--NOL4 BS_BKR4E30C 0.16723370617197 0.16723370617197 NA NA no change no change NA NA 18:34093465 18:34112697 ARRIBA frameshift 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr18:0.37Mb]],duplication NOL4 NA NOL4 NA NA NA NA NA NA -NOL4--NOL4 BS_G9XE3N9T 1.40502969074251 1.40502969074251 NA NA no change no change NA NA 18:34093465 18:34112697 ARRIBA frameshift 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr18:0.37Mb]],duplication NOL4 NA NOL4 NA NA NA NA NA NA -NOL4--NOL4 BS_J71N7D09 2.69828490286272 2.69828490286272 NA NA differentially expressed differentially expressed NA NA 18:34093465 18:34112697 ARRIBA frameshift 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr18:0.37Mb]],duplication NOL4 NA NOL4 NA NA NA NA NA NA -NOL4--NOL4 BS_M4NVX721 1.01305267053339 1.01305267053339 NA NA no change no change NA NA 18:34093465 18:34112697 ARRIBA frameshift 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr18:0.37Mb]],duplication NOL4 NA NOL4 NA NA NA NA NA NA -NOL4--NOL4 BS_WCRKYV0T 1.85341275034146 1.85341275034146 NA NA no change no change NA NA 18:34093465 18:34112697 ARRIBA frameshift 13 0 medium [SELFIE,INTRACHROMOSOMAL[chr18:0.37Mb]],duplication NOL4 NA NOL4 NA NA NA NA NA NA -NOL4--NOL4 BS_Y7F9E2E9 0.0587767012402945 0.0587767012402945 NA NA no change no change NA NA 18:34093465 18:34112697 ARRIBA frameshift 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr18:0.37Mb]],duplication NOL4 NA NOL4 NA NA NA NA NA NA -NOP14--GRK4 BS_7327SDAQ 0.694069154476487 1.51301947279098 NA NA no change no change NA NA 4:2963125 4:2996805 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr4:0.00Mb],LOCAL_INVERSION:-:+:[223]],duplication/5'-5' NOP14 NA GRK4 NA NA Kinase NA NA NA -NOP14--GRK4 BS_TBWYAFSM 1.653882301069 0.671603014387289 NA NA no change no change NA NA 4:2941582 4:3029476 ARRIBA frameshift 28 4 high [INTRACHROMOSOMAL[chr4:0.00Mb],LOCAL_INVERSION:-:+:[223]],duplication/5'-5' NOP14 NA GRK4 NA NA Kinase NA NA NA -NOP58(18261)/RN7SL753P(11512)--NOP58 BS_GC3CH9TY -0.575104853704446 -0.575104853704446 3.92314947350825 NA no change no change differentially expressed NA 2:202321927 2:202290323 ARRIBA other 1 0 low [],duplication NOP58 RN7SL753P NOP58 NA NA NA NA NA NA -NOP58(7831)/RN7SL753P(21942)--NOP58 BS_F5BZSF3Q -0.112794021318436 -0.112794021318436 7.85438890789041 NA no change no change differentially expressed NA 2:202311497 2:202297379 ARRIBA other 1 0 low [],duplication NOP58 RN7SL753P NOP58 NA NA NA NA NA NA -NOS1--NOS1 BS_8MA5B8Y9 1.57369677425832 1.57369677425832 NA NA no change no change NA NA 12:117226683 12:117227641 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing NOS1 NA NOS1 NA NA NA NA NA NA -NOS1AP--AL139142.1 BS_W60RQAKK 1.05627031608964 NA NA NA no change NA NA NA 1:162070282 1:173602772 ARRIBA frameshift 8 1 high [INTRACHROMOSOMAL[chr1:11.18Mb]],deletion NOS1AP NA AL139142.1 NA NA NA NA NA NA -NOS1AP--CA14 BS_NJ4WPQVK -0.097136577287343 -1.37775407170271 NA NA no change no change NA NA 1:162154476 1:150260151 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:11.80Mb]],duplication NOS1AP NA CA14 NA NA NA NA NA NA -NOTCH1--AGPAT2(21137)/FAM69B(4010) BS_VJ2S5DVS 6.86130388184095 0.712367590411219 NA -0.175954385214715 differentially expressed no change NA no change 9:136522850 9:136708560 ARRIBA frameshift 33 5 high [],duplication NOTCH1 NA AGPAT2 FAM69B TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NOTCH3--SLC47A1 BS_JAEM78XS 6.57890887339714 10.2184948872745 NA NA differentially expressed differentially expressed NA NA 19:15186878 17:19572780 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr19--chr17]],translocation NOTCH3 NA SLC47A1 NA TumorSuppressorGene, Oncogene NA NA NA NA -NOVA1--AL110292.1 BS_H1ZS5FMZ 3.04095868759806 NA NA NA differentially expressed NA NA NA 14:26595410 14:27077238 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.24Mb]],inversion NOVA1 NA AL110292.1 NA NA NA NA NA NA -NOVA1--AL117190.1 BS_QB84TBA3 2.24242299207697 4.06964007950531 NA NA differentially expressed differentially expressed NA NA 14:26595410 14:100937403 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr14:74.24Mb]],inversion NOVA1 NA AL117190.1 NA NA NA NA NA NA -NOVA1--AL358335.2(65724)/AL512360.1(261869) BS_2A162JH9 -0.166708366381842 NA NA NA no change NA NA NA 14:26595410 14:48557491 ARRIBA frameshift 2 0 medium [],duplication NOVA1 NA AL358335.2 AL512360.1 NA NA NA NA NA -NOVA1--MEG8 BS_QB84TBA3 2.24242299207697 5.52574670343218 NA NA differentially expressed differentially expressed NA NA 14:26595410 14:100937403 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr14:74.30Mb]],inversion NOVA1 NA MEG8 NA NA NA NA NA NA -NOVA1--NOVA1 BS_7G42J2SK -1.80018947516471 -1.80018947516471 NA NA no change no change NA NA 14:26472320 14:26480143 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing NOVA1 NA NOVA1 NA NA NA NA NA NA -NOVA1--NOVA1 BS_CZ3ER8DY -2.12968444347067 -2.12968444347067 NA NA differentially expressed differentially expressed NA NA 14:26472320 14:26480143 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing NOVA1 NA NOVA1 NA NA NA NA NA NA -NOXRED1--VIPAS39 BS_1EBQ3T20 1.81731435018006 -0.833340678339539 NA NA no change no change NA NA 14:77405913 14:77454102 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr14:0.00Mb],LOCAL_REARRANGEMENT:-:[3158]],duplication NOXRED1 NA VIPAS39 NA NA NA NA NA NA -NPAS2--NPAS2 BS_258RRGDM 0.269771267695986 0.269771267695986 NA NA no change no change NA NA 2:100965766 2:100948235 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing NPAS2 NA NPAS2 NA TumorSuppressorGene, TranscriptionFactor TumorSuppressorGene, TranscriptionFactor NA NA NA -NPAS2--NPAS2 BS_49BQS7Z6 -0.402203274374439 -0.402203274374439 NA NA no change no change NA NA 2:100965766 2:100948235 ARRIBA frameshift 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing NPAS2 NA NPAS2 NA TumorSuppressorGene, TranscriptionFactor TumorSuppressorGene, TranscriptionFactor NA NA NA -NPAS3--ARHGAP5 BS_74FS6GMW 2.56873158356076 2.36918644151005 NA NA differentially expressed differentially expressed NA NA 14:33055994 14:32152423 ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr14:0.78Mb]],duplication NPAS3 NA ARHGAP5 NA TranscriptionFactor CosmicCensus NA NA NA -NPAS3--ARHGAP5 BS_74FS6GMW 2.56873158356076 2.36918644151005 NA NA differentially expressed differentially expressed NA NA 14:32939366 14:32152423 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr14:0.78Mb]],duplication NPAS3 NA ARHGAP5 NA TranscriptionFactor CosmicCensus NA NA NA -NPAS3--RNU6-1060P(178786)/AL139231.1(33838) BS_6JHXXVR7 -0.0648182531739379 NA NA NA no change NA NA NA 14:33676385 6:23303873 ARRIBA frameshift 2 0 medium [],translocation NPAS3 NA RNU6-1060P AL139231.1 TranscriptionFactor NA NA NA NA -NPAS3--SMARCB1 BS_ZVZDDW2G 0.583666428068417 -0.314932300463267 NA NA no change no change NA NA 14:33367268 22:23791756 ARRIBA in-frame 17 7 high [INTERCHROMOSOMAL[chr14--chr22]],translocation NPAS3 NA SMARCB1 NA TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -NPAT--AP002812.3 BS_G23JJAZY 1.36755772911793 NA NA NA no change NA NA NA 11:108178423 11:77851523 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr11:30.31Mb]],deletion/5'-5' NPAT NA AP002812.3 NA NA NA NA NA NA -NPHP4--NPHP4 BS_7B89YR6K 1.03835791214666 1.03835791214666 NA NA no change no change NA NA 1:5927649 1:5961949 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing NPHP4 NA NPHP4 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_03FT4S8B -1.84981666859277 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 13 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_063ERW0R -1.13039040015366 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_0C7VZC0A -1.78192252485361 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_1N9XZXGE -1.19032481980515 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_29X4ZX6Q -1.18567424867194 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_2AR3AP0N -2.02582784130908 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_2SFTWNVE -1.36966844922778 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 15 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_2Z1MKS84 -1.28017485634471 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 21 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_34201DKZ -2.549152561929 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 14 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_37GTVG4N -1.58396445622259 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_399RPKC9 -1.84775542473003 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_39CGACC7 -2.5311606616332 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_3F5PR9GS -0.766306697431612 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_3P20Q2C3 -1.06273680888162 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 13 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_42DY6WS7 -1.74582136793774 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_4HQ3T2NC -2.16473238541151 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_4NF35AF6 -1.79065889150703 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 13 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_4QW2S1Q8 -1.49473480344213 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_4T0HPZDC -2.39828141839219 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_4Y6BCYK5 -2.41322026235009 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_55JW3HFM -2.39828141839219 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_5GNQC2FF -1.60374138310417 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_5PJCHF6V -1.05910385511503 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_5PV5N4HQ -1.93020838555053 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_742RHK1M -0.84794621857074 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_7B89YR6K -1.07126321392832 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_7Z93ZYMS -1.85239896232881 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_84XCR9GG -1.88229784044858 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_8F9BDWY4 -2.00527147062845 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_8ZP3CBQA -1.42688401218535 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 17 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_90B22NGP 0.0165339311499527 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 23 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_9BJARSX3 -1.81183002945844 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 24 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_9V633J1X -1.16352865614024 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 39 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_ABYF92Z9 -1.94932484066306 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_AGS1HHGF -2.37583959934345 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_AMZ70B6F -1.3108014745312 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_B24PKKQB -2.71607637232302 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_BA6AZWB3 -0.671242276630904 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 23 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_BJDNWMJH -2.22873583154542 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_CXVGG342 -2.10442876085487 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_CXVJK2FY -1.27927875979655 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_CYEY58NY -1.13064930211907 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 14 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_CZ3ER8DY -1.83649079323212 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_D8N31T39 -1.8148185881586 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_DFWFBYSN -1.33508459314437 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_DV86M0Y7 -0.864266856046949 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 32 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_DVCQ8XDZ -2.09264502296742 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_DY88N5ZT -0.837336216456282 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_DY9NTFQR -2.10377060607669 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 14 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_E4QK839R -2.58609462737898 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_E60JZ9Z3 -1.28646917147673 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_FAVRBEW7 -1.97053384405141 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_GC3CH9TY -2.53712355995145 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_GCQFGDTX -1.51924528550163 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 15 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_H3Y8FWHV -2.05618421996749 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_HCP5C912 -1.71273523469925 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_HD4EJYE3 -1.47582099633872 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_HHPA8NJ2 -1.79505465709739 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_J60G8DMK -1.95672763119715 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 17 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_J8G4SH4Z -0.94580441341157 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 28 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_JT82QGXF -1.15210088682962 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_K81DR8XG -0.60315648741522 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_KVNGNETA -2.11634708749075 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_KX6J8TRK -1.99100110305316 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_M1T1K5WV -1.2066277484162 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 13 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_MBSTWZA6 -2.62547682441138 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_MVW01FPB -1.04469721534025 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 28 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_MX23ZY0Y -0.469081040473689 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 27 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_N4B1SZZH -1.477263795554 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_N6NE6B3W -1.35319427246626 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 16 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_NNPEC7W1 -0.80065086422236 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_NT9NZYFD -1.983938440788 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_P0QF87WC -1.03354931861006 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_P4D8Y3S8 -2.16194599025466 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_P9JP6JFA -1.17481279889559 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_PJPGVD62 -2.16333825779437 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_QB7YGKN1 -1.2463634741961 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 14 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_QC3XCE6X -1.49951731023082 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_QPPPGYP4 -2.32013956602716 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_QWNBZ9RJ -2.20020501802918 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_R439VVPK -1.74023364713655 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_RD4D5F9F -1.11267953317641 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_S1M423AB -1.45370900332444 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_S69QZAJR -1.38508432136224 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 16 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_SHMC4902 -1.82283017734869 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_TM9MH0RP -2.40704305144582 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 16 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_VMQMGSJY -2.30009468601977 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_VNK9XYV9 -1.68022745606961 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_VVFBW0YH -0.671409010571694 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_VXEFKW5P -1.86960427045018 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_WE3Q8A73 -2.32663611224769 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_X67GTEM6 -2.06185716616282 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_XBQZYS8G -1.0499565841041 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_XHCYEE2S -1.76276633079891 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_YA8RBGD8 -2.0239976665642 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_YE1MAQYJ -1.67891294273237 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_YNEQJ6AH -1.03614774621832 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_Z1A875MW -1.96706512828274 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_Z8YZ6QGS -2.21987374544719 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_ZF34SJGN -1.83547274011117 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_ZR96A4FH -1.37423664324229 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_ZVWE73JZ -1.67541564790883 NA NA NA no change NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPIPA1--AC136443.2 BS_ZWR9W4FX -2.06312202009491 NA NA NA differentially expressed NA NA NA 16:14932796 16:14766447 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA -NPTN--LRRD1 BS_6DCSD5Y6 -1.00440619310727 4.93446244614988 NA NA no change differentially expressed NA NA 15:73633125 7:92142829 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr15--chr7]],translocation NPTN NA LRRD1 NA NA NA NA NA NA -NPTN--LRRD1 BS_6DCSD5Y6 -1.00440619310727 4.93446244614988 NA NA no change differentially expressed NA NA 15:73633125 7:92131872 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr15--chr7]],translocation NPTN NA LRRD1 NA NA NA NA NA NA -NPTXR--TTC33 BS_QWTE1CWR -0.0627322774035898 -0.403760367101375 NA NA no change no change NA NA 22:38843235 5:40604036 ARRIBA other 8 1 high [INTERCHROMOSOMAL[chr22--chr5]],translocation NPTXR NA TTC33 NA NA NA NA NA NA -NPTXR--TTC33 BS_QWTE1CWR -0.0627322774035898 -0.403760367101375 NA NA no change no change NA NA 22:38843235 5:40513069 ARRIBA other 7 0 high [INTERCHROMOSOMAL[chr22--chr5]],translocation NPTXR NA TTC33 NA NA NA NA NA NA -NR2C2--LINC01107(37773)/LINC01937(127497) BS_2EMW8ZG3 2.16400179341092 -0.600954312611768 NA NA differentially expressed no change NA NA 3:15016254 2:238592827 ARRIBA frameshift 2 0 medium [],translocation NR2C2 NA LINC01107 LINC01937 TumorSuppressorGene, TranscriptionFactor NA NA NA NA -NR2F2--AC103996.3 BS_PNYN0AYD 4.60240927475599 NA NA NA differentially expressed NA NA NA 15:96331578 15:93849022 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:2.47Mb]],inversion NR2F2 NA AC103996.3 NA TranscriptionFactor NA NA NA NA -NR2F2--LINC01579 BS_PNYN0AYD 4.60240927475599 2.2798547488808 NA NA differentially expressed differentially expressed NA NA 15:96331578 15:93849022 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:2.26Mb]],inversion NR2F2 NA LINC01579 NA TranscriptionFactor NA NA NA NA -NR6A1--DENND1A BS_DBDXCXT5 3.75312535179583 0.584506360677543 NA NA differentially expressed no change NA NA 9:124733308 9:123820381 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr9:0.59Mb]],inversion/5'-5' NR6A1 NA DENND1A NA TranscriptionFactor NA NA NA NA -NR6A1--DENND1A BS_EJ9JKM1C 3.20913830233398 0.691264920917666 NA NA differentially expressed no change NA NA 9:124733308 9:123820381 ARRIBA frameshift 22 5 high [INTRACHROMOSOMAL[chr9:0.59Mb]],inversion/5'-5' NR6A1 NA DENND1A NA TranscriptionFactor NA NA NA NA -NR6A1--DENND1A BS_GFM6EA61 1.18415841997133 -0.0627670024673717 NA NA no change no change NA NA 9:124733308 9:123820381 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr9:0.59Mb]],inversion/5'-5' NR6A1 NA DENND1A NA TranscriptionFactor NA NA NA NA -NR6A1--DENND1A BS_YB07VF1X 2.21074993333533 0.328106568521772 NA NA differentially expressed no change NA NA 9:124733308 9:123820381 ARRIBA frameshift 12 2 high [INTRACHROMOSOMAL[chr9:0.59Mb]],inversion/5'-5' NR6A1 NA DENND1A NA TranscriptionFactor NA NA NA NA -NRCAM--AC002383.1(80909)/RNU6-274P(179449) BS_WKESC3XN 0.545888367148664 NA NA NA no change NA NA NA 7:108456243 7:89575171 ARRIBA other 3 0 medium [],inversion NRCAM NA AC002383.1 RNU6-274P TumorSuppressorGene, Oncogene NA NA NA NA -NRCAM--CNTN1 BS_17WYVEEC 2.39747504317008 1.71331192692375 NA NA differentially expressed no change NA NA 7:108399436 12:40908357 ARRIBA other 1 0 low [HGNC_GENEFAM,INTERCHROMOSOMAL[chr7--chr12]],translocation NRCAM NA CNTN1 NA TumorSuppressorGene, Oncogene NA NA NA NA -NRCAM--DGKI BS_GYA4V1RD 1.04463983386016 3.24470735308472 NA NA no change differentially expressed NA NA 7:108312665 7:137599905 ARRIBA other 13 2 medium [INTRACHROMOSOMAL[chr7:28.92Mb]],duplication NRCAM NA DGKI NA TumorSuppressorGene, Oncogene NA NA NA NA -NRCAM--DGKI BS_GYA4V1RD 1.04463983386016 3.24470735308472 NA NA no change differentially expressed NA NA 7:108248383 7:137608998 ARRIBA other 13 2 medium [INTRACHROMOSOMAL[chr7:28.92Mb]],duplication NRCAM NA DGKI NA TumorSuppressorGene, Oncogene NA NA NA NA -NRCAM--PRKCB BS_QB7YGKN1 3.02162816514391 1.70259487776353 NA NA differentially expressed no change NA NA 7:108159463 16:24112973 ARRIBA frameshift 570 170 high [INTERCHROMOSOMAL[chr7--chr16]],translocation NRCAM NA PRKCB NA TumorSuppressorGene, Oncogene TumorSuppressorGene, CosmicCensus, Kinase NA NA NA -NRCAM--PRKCB BS_QB7YGKN1 3.02162816514391 1.70259487776353 NA NA differentially expressed no change NA NA 7:108189645 16:24112973 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr7--chr16]],translocation NRCAM NA PRKCB NA TumorSuppressorGene, Oncogene TumorSuppressorGene, CosmicCensus, Kinase NA NA NA -NRCAM--PRKCB BS_QB7YGKN1 3.02162816514391 1.70259487776353 NA NA differentially expressed no change NA NA 7:108180223 16:24214658 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr7--chr16]],translocation NRCAM NA PRKCB NA TumorSuppressorGene, Oncogene TumorSuppressorGene, CosmicCensus, Kinase NA NA NA -NRCAM--ZNF532 BS_NRFQEQKP 2.40337370753035 1.95184778520861 NA NA differentially expressed no change NA NA 7:108189645 18:58918271 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr7--chr18]],translocation NRCAM NA ZNF532 NA TumorSuppressorGene, Oncogene TranscriptionFactor NA NA NA -NREP-AS1(124888)/EPB41L4A(244)--NREP BS_09R7GDA7 -0.0497862947426981 2.2328281282942 1.31518104481471 NA no change differentially expressed no change NA 5:112142197 5:111735507 ARRIBA other 9 3 medium [],deletion NREP-AS1 EPB41L4A NREP NA NA NA NA NA NA -NREP-AS1(124888)/EPB41L4A(244)--NREP BS_T55Y4Z0Y -0.0497862947426981 -0.598428969441963 2.42341946244904 NA no change no change differentially expressed NA 5:112142197 5:111735507 ARRIBA other 3 0 medium [],deletion NREP-AS1 EPB41L4A NREP NA NA NA NA NA NA -NRF1--TFR2 BS_M0QYNVK8 1.16008399702849 -1.07490599973672 NA NA no change no change NA NA 7:129710571 7:100633556 ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chr7:28.97Mb]],inversion NRF1 NA TFR2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA -NRG1-IT1--NRG1 BS_AMQGM1V9 2.93367333240977 1.92591188146347 NA NA differentially expressed no change NA NA 8:32029485 8:31844448 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:0.11Mb]],duplication NRG1-IT1 NA NRG1 NA NA CosmicCensus NA NA NA -NRG1-IT1--NRG1 BS_BWBDH9GM 5.11770133196318 1.3974263437865 NA NA differentially expressed no change NA NA 8:32029485 8:31844448 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr8:0.11Mb]],duplication NRG1-IT1 NA NRG1 NA NA CosmicCensus NA NA NA -NRG1-IT1--NRG1 BS_FAVRBEW7 3.19161895499336 1.44821760272319 NA NA differentially expressed no change NA NA 8:32029485 8:31865615 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr8:0.11Mb]],duplication NRG1-IT1 NA NRG1 NA NA CosmicCensus NA NA NA -NRG1-IT1--NRG1 BS_NDN62H0S 5.72900967756954 1.6600984660305 NA NA differentially expressed no change NA NA 8:32029485 8:31898762 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr8:0.11Mb]],duplication NRG1-IT1 NA NRG1 NA NA CosmicCensus NA NA NA -NRG1-IT1--NRG1 BS_ZRM0W01M 10.6298094840467 2.03589435961736 NA NA differentially expressed differentially expressed NA NA 8:32029485 8:31844448 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:0.11Mb]],duplication NRG1-IT1 NA NRG1 NA NA CosmicCensus NA NA NA -NRG3--CCND2 BS_B1C6GZ84 0.626832933423007 9.10592306082471 NA NA no change differentially expressed NA NA 10:81876163 12:4299860 ARRIBA frameshift 6 1 medium [INTERCHROMOSOMAL[chr10--chr12]],translocation NRG3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA -NRG4--NRG4 BS_0BXY0F9N -0.0384324850141185 -0.0384324850141185 NA NA no change no change NA NA 15:75943572 15:76011286 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_0WVJYM9R -0.624163755717769 -0.624163755717769 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_0Y66ZBWE 0.0919824416738317 0.0919824416738317 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_2XD3MNKD -0.408776695091568 -0.408776695091568 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_34201DKZ 1.05237403357431 1.05237403357431 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_3X9WMZGJ 0.659169544027425 0.659169544027425 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_470DYRJQ 0.847998515306955 0.847998515306955 NA NA no change no change NA NA 15:76009200 15:76052983 ARRIBA frameshift 13 2 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_5965SFPZ -0.618810149327224 -0.618810149327224 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_5PEFNDCY 0.276862778590516 0.276862778590516 NA NA no change no change NA NA 15:76009200 15:76052983 ARRIBA frameshift 16 2 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_6MZ7FRZH 0.259102645718905 0.259102645718905 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_7BTZQKYY 2.42617762613696 2.42617762613696 NA NA differentially expressed differentially expressed NA NA 15:75955932 15:76052983 ARRIBA frameshift 20 2 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_7FWZ518S 1.11504827956741 1.11504827956741 NA NA no change no change NA NA 15:76009200 15:76052983 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_8RHPJ740 0.646311704584634 0.646311704584634 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_9DZ253JY 0.943823056750813 0.943823056750813 NA NA no change no change NA NA 15:76009200 15:76052983 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_B1HVNV0T 0.380508591842261 0.380508591842261 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_B8T7M0WV 1.32577011346785 1.32577011346785 NA NA no change no change NA NA 15:75943572 15:76011286 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_D0BGESQF 0.63890156923007 0.63890156923007 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_DV86M0Y7 0.375882662079683 0.375882662079683 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_EK5PCKY0 0.614495230135463 0.614495230135463 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_ET8CJXSF -0.192346323114939 -0.192346323114939 NA NA no change no change NA NA 15:76009200 15:76035991 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_F6Z5HFWH 0.705747749984762 0.705747749984762 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_FAVRBEW7 1.39472547247975 1.39472547247975 NA NA no change no change NA NA 15:76009200 15:76052983 ARRIBA frameshift 7 3 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_FEPRNEXX 2.23895965989256 2.23895965989256 NA NA differentially expressed differentially expressed NA NA 15:75955932 15:76052983 ARRIBA frameshift 19 3 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_G9XE3N9T 0.698699354172064 0.698699354172064 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_GCA4GET3 0.246252732359581 0.246252732359581 NA NA no change no change NA NA 15:76009200 15:76052983 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_GS1KR5PK -0.0955660932314663 -0.0955660932314663 NA NA no change no change NA NA 15:76009200 15:76052983 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_HZ707C55 1.96902684339401 1.96902684339401 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_J71N7D09 1.0258138380675 1.0258138380675 NA NA no change no change NA NA 15:76009200 15:76052983 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_KVNGNETA 0.573981715857149 0.573981715857149 NA NA no change no change NA NA 15:75943572 15:76011286 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_KZPR01BD 0.05615491639536 0.05615491639536 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_M1PVEHCM -0.226436340453145 -0.226436340453145 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_MKP2Y41Z 0.321351678696136 0.321351678696136 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_N6NE6B3W 1.90594069036942 1.90594069036942 NA NA no change no change NA NA 15:76009200 15:76052983 ARRIBA frameshift 34 4 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_NDN62H0S -0.435952978388787 -0.435952978388787 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_NZ71XCG3 -0.0649778825295243 -0.0649778825295243 NA NA no change no change NA NA 15:76009200 15:76052983 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_P78SMRBS 1.63483381270817 1.63483381270817 NA NA no change no change NA NA 15:76009200 15:76052983 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_PJPGVD62 -0.0417184882477762 -0.0417184882477762 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_Q5WZYWCT 2.21445909610668 2.21445909610668 NA NA differentially expressed differentially expressed NA NA 15:75943572 15:76011286 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_QEYPFYHD -0.640370473976112 -0.640370473976112 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_RHD7XPNP 1.49483554000066 1.49483554000066 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_S69QZAJR -0.119912131720728 -0.119912131720728 NA NA no change no change NA NA 15:75943572 15:76011286 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_SAA624A4 1.61943221473516 1.61943221473516 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 10 5 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_SDA4RMMG -0.00287236919165716 -0.00287236919165716 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_SFKZSJN1 0.0801592635481209 0.0801592635481209 NA NA no change no change NA NA 15:75943572 15:76011286 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_TNRHHYNC 1.46919818476532 1.46919818476532 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_W4HGV6E7 1.93883769438743 1.93883769438743 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 21 2 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_WFD0GE5X 0.824378929473053 0.824378929473053 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_Y8D1F5WW -0.684698395107462 -0.684698395107462 NA NA no change no change NA NA 15:76009200 15:76052983 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_YE1MAQYJ 1.43635550601386 1.43635550601386 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_Z85M2R3N 2.12183405245128 2.12183405245128 NA NA differentially expressed differentially expressed NA NA 15:76009200 15:76052983 ARRIBA frameshift 16 2 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_ZA9XT151 1.50385963934802 1.50385963934802 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_ZRM0W01M 1.50385963934802 1.50385963934802 NA NA no change no change NA NA 15:75955932 15:76052983 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRG4--NRG4 BS_ZXYDSBM9 -0.690357196328474 -0.690357196328474 NA NA no change no change NA NA 15:75943572 15:76011286 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA -NRIP1--TTC9C BS_HZ707C55 1.58648885198526 -0.559388003276256 NA NA no change no change NA NA 21:15006624 11:62728163 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr21--chr11]],translocation/5'-5' NRIP1 NA TTC9C NA Oncogene NA NA NA NA -NRP1--TMEM117 BS_A0DYVX9J 3.21077303081042 3.61042310543001 NA NA differentially expressed differentially expressed NA NA 10:33207572 12:43844624 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr10--chr12]],translocation NRP1 NA TMEM117 NA NA NA NA NA NA -NRP1--TWF1 BS_A0DYVX9J 3.21077303081042 2.76694528119332 NA NA differentially expressed differentially expressed NA NA 10:33206296 12:43795768 ARRIBA frameshift 6 1 medium [INTERCHROMOSOMAL[chr10--chr12]],translocation/5'-5' NRP1 NA TWF1 NA NA NA NA NA NA -NRXN1--MIR3681HG BS_YBJBSRHV 1.61930101677564 NA NA NA no change NA NA NA 2:50465442 2:12111690 ARRIBA frameshift 6 2 high [INTRACHROMOSOMAL[chr2:37.34Mb]],deletion/5'-5' NRXN1 NA MIR3681HG NA NA NA NA NA NA -NRXN1--NRXN1 BS_6T4JGBGY 0.358989342104435 0.358989342104435 NA NA no change no change NA NA 2:50465442 2:50620183 ARRIBA frameshift 8 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:1.31Mb]],duplication/non-canonical_splicing NRXN1 NA NRXN1 NA NA NA NA NA NA -NRXN1--NRXN1 BS_JVA2NQFF 2.10713530143064 2.10713530143064 NA NA differentially expressed differentially expressed NA NA 2:50539095 2:50538783 ARRIBA other 3 0 high [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:1.31Mb]],inversion/3'-3' NRXN1 NA NRXN1 NA NA NA NA NA NA -NRXN1--NRXN1 BS_KVNGNETA 2.50334419048272 2.50334419048272 NA NA differentially expressed differentially expressed NA NA 2:50465442 2:50620183 ARRIBA frameshift 39 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:1.31Mb]],duplication/non-canonical_splicing NRXN1 NA NRXN1 NA NA NA NA NA NA -NRXN1--NRXN1 BS_PEP9NZXN 2.79662107581781 2.79662107581781 NA NA differentially expressed differentially expressed NA NA 2:50539095 2:50538783 ARRIBA other 5 0 high [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:1.31Mb]],inversion/3'-3' NRXN1 NA NRXN1 NA NA NA NA NA NA -NRXN2--AP000770.1(80168)/BUD13(9750) BS_SXCZ3CXN 0.644307285950258 -0.155102130284522 NA 0.893512088936526 no change no change NA no change 11:64685646 11:116738420 ARRIBA frameshift 11 0 high [],inversion NRXN2 NA AP000770.1 BUD13 Oncogene NA NA NA NA -NRXN2--BUD13 BS_SXCZ3CXN 0.644307285950258 0.893512088936526 NA NA no change no change NA NA 11:64685646 11:116738420 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr11:52.02Mb]],inversion/5'-5' NRXN2 NA BUD13 NA Oncogene NA NA NA NA -NRXN2--NRXN2 BS_9DZ253JY -0.748509923040552 -0.748509923040552 NA NA no change no change NA NA 11:64685646 11:64685947 ARRIBA frameshift 20 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.12Mb]],duplication/non-canonical_splicing NRXN2 NA NRXN2 NA Oncogene Oncogene NA NA NA -NRXN2--NRXN2 BS_ZA9XT151 -0.753504554004558 -0.753504554004558 NA NA no change no change NA NA 11:64685646 11:64685947 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.12Mb]],duplication/non-canonical_splicing NRXN2 NA NRXN2 NA Oncogene Oncogene NA NA NA -NRXN3--KIF26B BS_D2K9C7XR -0.548088634504561 5.65687167673898 NA NA no change differentially expressed NA NA 14:78403878 1:245366834 ARRIBA other 22 3 high [INTERCHROMOSOMAL[chr14--chr1]],translocation NRXN3 NA KIF26B NA NA NA NA NA NA -NRXN3--KIF26B BS_D2K9C7XR -0.548088634504561 5.65687167673898 NA NA no change differentially expressed NA NA 14:78243802 1:245366834 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr14--chr1]],translocation NRXN3 NA KIF26B NA NA NA NA NA NA -NRXN3--KIF26B BS_D2K9C7XR -0.548088634504561 5.65687167673898 NA NA no change differentially expressed NA NA 14:78297860 1:245366834 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr14--chr1]],translocation NRXN3 NA KIF26B NA NA NA NA NA NA -NRXN3--NRXN3 BS_196BBNEJ -0.829846054198605 -0.829846054198605 NA NA no change no change NA NA 14:78988141 14:78645120 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:1.70Mb]],duplication/non-canonical_splicing NRXN3 NA NRXN3 NA NA NA NA NA NA -NSD1--SLIT3 BS_X2QTK3QD 3.63643417255857 2.45492634152628 NA NA differentially expressed differentially expressed NA NA 5:177244270 5:169149971 ARRIBA frameshift 29 3 high [INTRACHROMOSOMAL[chr5:7.83Mb]],duplication/5'-5' NSD1 NA SLIT3 NA CosmicCensus, Oncogene NA NA NA NA -NSMCE2--HERC6(7509)/HERC5(6497) BS_23QW0BBA 0.00606525977819044 -0.255336339065346 NA 0.623733921199545 no change no change NA no change 8:125102487 4:88450620 ARRIBA frameshift 3 0 medium [],translocation NSMCE2 NA HERC6 HERC5 NA NA NA NA NA -NSMCE2--SDCCAG8 BS_1EBQ3T20 2.28757327744374 1.12937069070223 NA NA differentially expressed no change NA NA 8:125182256 1:243270105 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr8--chr1]],translocation NSMCE2 NA SDCCAG8 NA NA Oncogene NA NA NA -NSMCE2(32828)/TRIB1(30373)--CSPP1 BS_HZRM07TW -0.624252881377302 -1.38272345958931 1.89081316551046 NA no change no change no change NA 8:125399948 8:67105905 ARRIBA other 3 0 high [],duplication NSMCE2 TRIB1 CSPP1 NA NA NA Kinase NA NA -NTN1--STX8 BS_17WYVEEC 7.10910639537628 -0.520396076712225 NA NA differentially expressed no change NA NA 17:9023391 17:9378653 ARRIBA in-frame 1 0 low [GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr17:0.01Mb],LOCAL_INVERSION:+:-:[6471]],inversion NTN1 NA STX8 NA NA NA NA NA TCGAFusion -NTN1--STX8 BS_17WYVEEC 7.10910639537628 -0.520396076712225 NA NA differentially expressed no change NA NA 17:9023391 17:9250645 ARRIBA in-frame 1 0 low [GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr17:0.01Mb],LOCAL_INVERSION:+:-:[6471]],inversion NTN1 NA STX8 NA NA NA NA NA TCGAFusion -NTN4--AC090001.1 BS_34201DKZ 0.846468643845728 NA NA NA no change NA NA NA 12:95665810 12:95833084 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_34201DKZ 0.846468643845728 NA NA NA no change NA NA NA 12:95682707 12:95833084 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_34201DKZ 0.846468643845728 NA NA NA no change NA NA NA 12:95710441 12:95833084 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_34201DKZ 0.846468643845728 NA NA NA no change NA NA NA 12:95786939 12:95833084 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_49BQS7Z6 0.433462484905316 NA NA NA no change NA NA NA 12:95665810 12:95833084 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_7BTZQKYY 1.77016011508004 NA NA NA no change NA NA NA 12:95710441 12:95833084 ARRIBA frameshift 7 2 high [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_7BTZQKYY 1.77016011508004 NA NA NA no change NA NA NA 12:95665810 12:95833084 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_7BTZQKYY 1.77016011508004 NA NA NA no change NA NA NA 12:95682707 12:95833084 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_7BTZQKYY 1.77016011508004 NA NA NA no change NA NA NA 12:95670078 12:95833084 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_7BTZQKYY 1.77016011508004 NA NA NA no change NA NA NA 12:95737866 12:95833084 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_7BTZQKYY 1.77016011508004 NA NA NA no change NA NA NA 12:95786939 12:95833084 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_7BTZQKYY 1.77016011508004 NA NA NA no change NA NA NA 12:95737866 12:95795657 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_HC44ZA0V 0.621023741429769 NA NA NA no change NA NA NA 12:95682707 12:95833084 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_HC44ZA0V 0.621023741429769 NA NA NA no change NA NA NA 12:95665810 12:95833084 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_HC44ZA0V 0.621023741429769 NA NA NA no change NA NA NA 12:95710441 12:95833084 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_HC44ZA0V 0.621023741429769 NA NA NA no change NA NA NA 12:95786939 12:95833084 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_Q5WZYWCT 0.715894751429095 NA NA NA no change NA NA NA 12:95710441 12:95833084 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_W4HGV6E7 -0.05536252936547 NA NA NA no change NA NA NA 12:95665810 12:95833084 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_W4HGV6E7 -0.05536252936547 NA NA NA no change NA NA NA 12:95682707 12:95833084 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_W4HGV6E7 -0.05536252936547 NA NA NA no change NA NA NA 12:95710441 12:95833084 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--AC090001.1 BS_W4HGV6E7 -0.05536252936547 NA NA NA no change NA NA NA 12:95786939 12:95833084 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA -NTN4--NTN4 BS_7BTZQKYY 1.77016011508004 1.77016011508004 NA NA no change no change NA NA 12:95710441 12:95787468 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing NTN4 NA NTN4 NA NA NA NA NA NA -NTNG1--LINC01661(148007)/PRMT6(70505) BS_BSV07M7Z 1.43521604238764 NA NA 2.83081536631405 no change NA NA differentially expressed 1:107407708 1:106986174 ARRIBA frameshift 2 0 medium [],duplication NTNG1 NA LINC01661 PRMT6 NA NA NA NA NA -NTNG2--LPAR1 BS_A0DYVX9J 1.53051965142487 -2.69518811097313 NA NA no change differentially expressed NA NA 9:132198609 9:110875722 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:21.12Mb]],inversion NTNG2 NA LPAR1 NA NA Oncogene NA NA NA -NTRK2--AFAP1 BS_S458NMKH 0.841861413534496 5.57429126570269 NA NA no change differentially expressed NA NA 9:84752085 4:7786311 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr9--chr4]],translocation NTRK2 NA AFAP1 NA Oncogene, Kinase NA NA NA NA -NTRK2--AFAP1 BS_S458NMKH 0.841861413534496 5.57429126570269 NA NA no change differentially expressed NA NA 9:84752085 4:7800653 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr9--chr4]],translocation NTRK2 NA AFAP1 NA Oncogene, Kinase NA NA NA NA -NTRK2--AFAP1 BS_S458NMKH 0.841861413534496 5.57429126570269 NA NA no change differentially expressed NA NA 9:84867431 4:7872080 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr9--chr4]],translocation NTRK2 NA AFAP1 NA Oncogene, Kinase NA NA NA NA -NTRK2--AFAP1 BS_S458NMKH 0.841861413534496 5.57429126570269 NA NA no change differentially expressed NA NA 9:84752085 4:7809763 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr9--chr4]],translocation NTRK2 NA AFAP1 NA Oncogene, Kinase NA NA NA NA -NTRK2--AFAP1 BS_S458NMKH 0.841861413534496 5.57429126570269 NA NA no change differentially expressed NA NA 9:84752085 4:7819171 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr9--chr4]],translocation NTRK2 NA AFAP1 NA Oncogene, Kinase NA NA NA NA -NTRK2--CTNND2 BS_TM9MH0RP 1.87625965312201 1.08540221972816 NA NA no change no change NA NA 9:84752085 5:11346627 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr9--chr5]],translocation NTRK2 NA CTNND2 NA Oncogene, Kinase CosmicCensus, Oncogene NA NA NA -NTRK2--DIAPH2 BS_EBMCTR80 0.452138412044829 5.17194233513738 NA NA no change differentially expressed NA NA 9:84752085 X:97072941 ARRIBA in-frame 28 5 high [INTERCHROMOSOMAL[chr9--chrX]],translocation NTRK2 NA DIAPH2 NA Oncogene, Kinase NA NA NA NA -NTRK2--KCTD8 BS_2AR3AP0N 1.29478640701668 0.667697976144462 NA NA no change no change NA NA 9:84752085 4:44175250 ARRIBA in-frame 4 0 medium [INTERCHROMOSOMAL[chr9--chr4]],translocation NTRK2 NA KCTD8 NA Oncogene, Kinase NA NA NA NA -NTRK2--KCTD8 BS_2AR3AP0N 1.29478640701668 0.667697976144462 NA NA no change no change NA NA 9:84867431 4:44293831 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr9--chr4]],translocation NTRK2 NA KCTD8 NA Oncogene, Kinase NA NA NA NA -NTRK3--NTRK3 BS_8RHPJ740 0.927598990937557 0.927598990937557 NA NA no change no change NA NA 15:88011211 15:88033045 ARRIBA other 3 1 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.40Mb]],duplication NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -NTRK3--NTRK3 BS_AM70R8RG 4.48318027067348 4.48318027067348 NA NA differentially expressed differentially expressed NA NA 15:88126271 15:88137561 ARRIBA frameshift 28 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.40Mb]],duplication/non-canonical_splicing NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -NTRK3--NTRK3 BS_AMZ70B6F 3.93357239622448 3.93357239622448 NA NA differentially expressed differentially expressed NA NA 15:88126271 15:88137561 ARRIBA frameshift 17 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.40Mb]],duplication/non-canonical_splicing NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -NTRK3--NTRK3 BS_GG9W3J9Y 2.12973082491998 2.12973082491998 NA NA differentially expressed differentially expressed NA NA 15:88126271 15:88137561 ARRIBA frameshift 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.40Mb]],duplication/non-canonical_splicing NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -NTRK3--NTRK3 BS_P0QF87WC 0.708352937487962 0.708352937487962 NA NA no change no change NA NA 15:88135101 15:88137561 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.40Mb]],duplication/non-canonical_splicing NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -NTRK3--NTRK3 BS_RSRPX3S8 3.19446272269547 3.19446272269547 NA NA differentially expressed differentially expressed NA NA 15:88126271 15:88137561 ARRIBA frameshift 11 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.40Mb]],duplication/non-canonical_splicing NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -NTRK3--NTRK3 BS_TRKH2SPE 2.09091726351676 2.09091726351676 NA NA differentially expressed differentially expressed NA NA 15:88126271 15:88137561 ARRIBA frameshift 13 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.40Mb]],duplication/non-canonical_splicing NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -NTRK3--PHF14 BS_FCAKKZ20 3.67462249729734 4.70105213121907 NA NA differentially expressed differentially expressed NA NA 15:88032857 7:10982372 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr15--chr7]],translocation NTRK3 NA PHF14 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA -NTRK3--SDCBP2-AS1 BS_GE2RVZE6 4.11494091878842 3.18768637725413 NA NA differentially expressed differentially expressed NA NA 15:88252198 20:1377816 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr15--chr20]],translocation NTRK3 NA SDCBP2-AS1 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA -NUBPL--LINC02307 BS_KE56MMY0 2.78305359884946 NA NA NA differentially expressed NA NA NA 14:31565048 14:43995843 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr14:12.13Mb]],inversion NUBPL NA LINC02307 NA NA NA NA NA NA -NUBPL--NUBPL BS_1EBQ3T20 3.65678854069677 3.65678854069677 NA NA differentially expressed differentially expressed NA NA 14:31850201 14:31562068 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.37Mb]],duplication/non-canonical_splicing NUBPL NA NUBPL NA NA NA NA NA NA -NUBPL(23588)/AL355112.1(40989)--NUBPL BS_M1T1K5WV 2.8213983381147 2.8213983381147 NA NA differentially expressed differentially expressed NA NA 14:31884812 14:31846471 ARRIBA other 3 0 medium [],duplication NUBPL AL355112.1 NUBPL NA NA NA NA NA NA -NUDT16L1--AC135050.2 BS_Y3G1X98S -0.480250921749797 NA NA NA no change NA NA NA 16:4694238 16:31091342 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr16:26.39Mb]],inversion NUDT16L1 NA AC135050.2 NA NA NA NA NA NA -NUDT16L1--AC135050.2 BS_Y3G1X98S -0.480250921749797 NA NA NA no change NA NA NA 16:4694308 16:31093421 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr16:26.39Mb]],inversion NUDT16L1 NA AC135050.2 NA NA NA NA NA NA -NUDT16L1--VKORC1 BS_Y3G1X98S -0.480250921749797 2.91739054916646 NA NA no change differentially expressed NA NA 16:4694238 16:31091342 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr16:26.39Mb]],inversion NUDT16L1 NA VKORC1 NA NA NA NA NA NA -NUDT16L1--VKORC1 BS_Y3G1X98S -0.480250921749797 2.91739054916646 NA NA no change differentially expressed NA NA 16:4694308 16:31093421 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr16:26.39Mb]],inversion NUDT16L1 NA VKORC1 NA NA NA NA NA NA -NUDT8--AP001362.1(6529)/SSSCA1-AS1(346) BS_G23JJAZY -1.07135789643577 NA NA -1.41601215863392 no change NA NA no change 11:67629718 11:65568136 ARRIBA frameshift 3 0 medium [],inversion NUDT8 NA AP001362.1 SSSCA1-AS1 NA NA NA NA NA -NUDT8--LTBP3 BS_G23JJAZY -1.07135789643577 0.575752051998453 NA NA no change no change NA NA 11:67629428 11:65558334 ARRIBA other 17 0 medium [INTRACHROMOSOMAL[chr11:2.07Mb]],inversion/5'-5' NUDT8 NA LTBP3 NA NA Oncogene NA NA NA -NUDT8--SSSCA1 BS_G23JJAZY -1.07135789643577 -0.209462022416414 NA NA no change no change NA NA 11:67629718 11:65570604 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr11:2.05Mb]],inversion NUDT8 NA SSSCA1 NA NA NA NA NA NA -NUDT8--SSSCA1 BS_G23JJAZY -1.07135789643577 -0.209462022416414 NA NA no change no change NA NA 11:67629718 11:65570886 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr11:2.05Mb]],inversion NUDT8 NA SSSCA1 NA NA NA NA NA NA -NUMA1--AP001994.1(146726)/AP001360.1(19099) BS_7G42J2SK -0.664241124822618 NA NA NA no change NA NA NA 11:72013391 11:119968855 ARRIBA frameshift 31 7 medium [],duplication NUMA1 NA AP001994.1 AP001360.1 CosmicCensus, Oncogene NA NA NA NA -NUMA1--UVRAG BS_W60RQAKK -0.251051377531773 0.523285219144197 NA NA no change no change NA NA 11:72069841 11:75983387 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr11:3.73Mb]],inversion NUMA1 NA UVRAG NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA -NUMA1--UVRAG BS_W60RQAKK -0.251051377531773 0.523285219144197 NA NA no change no change NA NA 11:72080458 11:75983387 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr11:3.73Mb]],inversion NUMA1 NA UVRAG NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA -NUMB--TRAV7 BS_ZVZDDW2G 0.426827616118184 76.1930864076837 NA NA no change differentially expressed NA NA 14:73355626 14:21782179 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr14:51.49Mb]],inversion NUMB NA TRAV7 NA TumorSuppressorGene NA NA NA NA -NUP153--CDH12 BS_6JHXXVR7 1.34335485221626 1.0744821989387 NA NA no change no change NA NA 6:17706277 5:22212643 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr6--chr5]],translocation NUP153 NA CDH12 NA NA NA NA NA NA -NUP153--CDH18 BS_6JHXXVR7 1.34335485221626 -1.72930683827661 NA NA no change no change NA NA 6:17706277 5:19837638 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr6--chr5]],translocation/5'-5' NUP153 NA CDH18 NA NA NA NA NA NA -NUP160--GRM5 BS_6JHXXVR7 3.64704539222215 3.89083517583982 NA NA differentially expressed differentially expressed NA NA 11:47847848 11:89113533 ARRIBA frameshift 23 3 high [INTRACHROMOSOMAL[chr11:40.66Mb]],duplication NUP160 NA GRM5 NA NA NA NA NA NA -NUP160--GRM5 BS_KE56MMY0 4.13975531858742 3.04739434266558 NA NA differentially expressed differentially expressed NA NA 11:47847848 11:89113533 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr11:40.66Mb]],duplication NUP160 NA GRM5 NA NA NA NA NA NA -NUP160--GRM5(47588)/TYR(63919) BS_6JHXXVR7 3.64704539222215 3.89083517583982 NA 0.129268815762765 differentially expressed differentially expressed NA no change 11:47847848 11:89113533 ARRIBA frameshift 26 1 high [],duplication NUP160 NA GRM5 TYR NA NA NA NA NA -NUP160--GRM5(47588)/TYR(63919) BS_KE56MMY0 4.13975531858742 3.04739434266558 NA 2.73312509685297 differentially expressed differentially expressed NA differentially expressed 11:47847848 11:89113533 ARRIBA frameshift 3 0 medium [],duplication NUP160 NA GRM5 TYR NA NA NA NA NA -NUP205--LINC01510 BS_6JHXXVR7 3.34033435624178 0.682436192917446 NA NA differentially expressed no change NA NA 7:135598825 7:116610653 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr7:18.94Mb]],duplication/5'-5' NUP205 NA LINC01510 NA NA NA NA NA NA -NUP205--LINC01510(11950)/MET(45620) BS_6JHXXVR7 3.34033435624178 0.682436192917446 NA 11.1392074100231 differentially expressed no change NA differentially expressed 7:135598207 7:116626770 ARRIBA frameshift 4 2 medium [],duplication NUP205 NA LINC01510 MET NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA -NUP205--PARP14 BS_6DCSD5Y6 1.50582720135328 3.14974318994054 NA NA no change differentially expressed NA NA 7:135607371 3:122708190 ARRIBA in-frame 3 0 high [INTERCHROMOSOMAL[chr7--chr3]],translocation NUP205 NA PARP14 NA NA NA NA NA NA -NUP205--PARP14 BS_6DCSD5Y6 1.50582720135328 3.14974318994054 NA NA no change differentially expressed NA NA 7:135607371 3:122713424 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr7--chr3]],translocation NUP205 NA PARP14 NA NA NA NA NA NA -NUP210--AP001360.2(25075)/TRIM29(74042) BS_07ANYSYQ 0.524865333773141 NA NA 1.23099606789956 no change NA NA no change 3:13358222 11:120037233 ARRIBA frameshift 4 0 high [],translocation NUP210 NA AP001360.2 TRIM29 NA NA NA NA NA -NUP214--AIF1L(1672)/NUP214(737) BS_044XZ8ST 1.32623052266225 1.11507172263449 NA 1.32623052266225 no change no change NA no change 9:131192292 9:131124824 ARRIBA frameshift 1 0 low [],duplication NUP214 NA AIF1L NUP214 CosmicCensus, Oncogene NA NA CosmicCensus, Oncogene NA -NUP214--NUP214 BS_G63HYD6N 1.2449001950456 1.2449001950456 NA NA no change no change NA NA 9:131164144 9:131144280 ARRIBA in-frame 9 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing NUP214 NA NUP214 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -NUP214--NUP214 BS_NGHK9RZP 1.85309507327042 1.85309507327042 NA NA no change no change NA NA 9:131164144 9:131144280 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing NUP214 NA NUP214 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -NUP35--ICA1L BS_RRAEQZ97 0.445825387544913 0.0363392466198992 NA NA no change no change NA NA 2:183154974 2:202802091 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr2:19.61Mb]],deletion/5'-5' NUP35 NA ICA1L NA NA NA NA NA NA -NUP88--USP43 BS_QWTE1CWR -0.00336232843920138 0.296445105318313 NA NA no change no change NA NA 17:5419354 17:9674891 ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr17:4.22Mb]],inversion NUP88 NA USP43 NA NA NA NA NA NA -NUP88--USP43 BS_QWTE1CWR -0.00336232843920138 0.296445105318313 NA NA no change no change NA NA 17:5419354 17:9680231 ARRIBA in-frame 4 0 high [INTRACHROMOSOMAL[chr17:4.22Mb]],inversion NUP88 NA USP43 NA NA NA NA NA NA -NUP88--USP43 BS_QWTE1CWR -0.00336232843920138 0.296445105318313 NA NA no change no change NA NA 17:5419354 17:9676746 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr17:4.22Mb]],inversion NUP88 NA USP43 NA NA NA NA NA NA -NUP88--USP43 BS_WKESC3XN 0.36931262270517 0.271983715137838 NA NA no change no change NA NA 17:5419354 17:9674891 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr17:4.22Mb]],inversion NUP88 NA USP43 NA NA NA NA NA NA -NUP88--USP43 BS_WKESC3XN 0.36931262270517 0.271983715137838 NA NA no change no change NA NA 17:5419354 17:9680231 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr17:4.22Mb]],inversion NUP88 NA USP43 NA NA NA NA NA NA -NUP98--NFKBIE BS_6JHXXVR7 2.19555872702866 2.90186314815711 NA NA differentially expressed differentially expressed NA NA 11:3797400 6:44262662 ARRIBA other 27 1 high [INTERCHROMOSOMAL[chr11--chr6]],translocation NUP98 NA NFKBIE NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -NUP98--NFKBIE BS_6JHXXVR7 2.19555872702866 2.90186314815711 NA NA differentially expressed differentially expressed NA NA 11:3797400 6:44260539 ARRIBA other 28 0 high [INTERCHROMOSOMAL[chr11--chr6]],translocation NUP98 NA NFKBIE NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -NUP98--NFKBIE BS_KE56MMY0 2.47326145566623 2.64755508319488 NA NA differentially expressed differentially expressed NA NA 11:3797400 6:44262662 ARRIBA other 5 1 high [INTERCHROMOSOMAL[chr11--chr6]],translocation NUP98 NA NFKBIE NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -NUP98--NFKBIE BS_KE56MMY0 2.47326145566623 2.64755508319488 NA NA differentially expressed differentially expressed NA NA 11:3797400 6:44260539 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr11--chr6]],translocation NUP98 NA NFKBIE NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -NUP98--PRMT3(51647)/HMGB1P40(13245) BS_MX23ZY0Y 1.75850803699294 0.620079564058278 NA NA no change no change NA NA 11:3713818 11:20560941 ARRIBA frameshift 3 0 high [],duplication NUP98 NA PRMT3 HMGB1P40 TumorSuppressorGene, CosmicCensus, Oncogene TranscriptionFactor NA NA NA -NUP98--PRMT3(52398)/HMGB1P40(12494) BS_4QW2S1Q8 0.991508757206233 1.07157913121874 NA NA no change no change NA NA 11:3713818 11:20561692 ARRIBA frameshift 3 0 high [],duplication NUP98 NA PRMT3 HMGB1P40 TumorSuppressorGene, CosmicCensus, Oncogene TranscriptionFactor NA NA NA -NUTM2A-AS1--BEND3P1(6626)/NUTM2HP(9645) BS_8Z3SCKB5 0.121742299747159 -0.560750973491026 NA 0.229909603617815 no change no change NA no change 10:87288442 10:50667098 ARRIBA other 2 0 medium [],deletion NUTM2A-AS1 NA BEND3P1 NUTM2HP NA NA NA NA NA -NUTM2A-AS1--BEND3P1(6626)/NUTM2HP(9645) BS_BPWEFR89 1.6790292841525 -0.0678374249131587 NA 0.807653447823171 no change no change NA no change 10:87288442 10:50667098 ARRIBA other 2 0 medium [],deletion NUTM2A-AS1 NA BEND3P1 NUTM2HP NA NA NA NA NA -NUTM2A-AS1--BEND3P1(6626)/NUTM2HP(9645) BS_VVFBW0YH 2.43109708726034 -0.435750815629138 NA -0.359053265958614 differentially expressed no change NA no change 10:87288442 10:50667098 ARRIBA other 2 0 medium [],deletion NUTM2A-AS1 NA BEND3P1 NUTM2HP NA NA NA NA NA -NUTM2A-AS1--GLUD2 BS_8PNA0V6R 1.48957263647258 7.03880514594976 NA NA no change differentially expressed NA NA 10:87288442 X:121048130 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr10--chrX]],translocation NUTM2A-AS1 NA GLUD2 NA NA NA NA NA NA -NUTM2A-AS1--PTEN BS_7327SDAQ 1.3859685338715 1.31485529284504 NA NA no change no change NA NA 10:87326630 10:87925513 ARRIBA other 18 10 high [INTRACHROMOSOMAL[chr10:0.52Mb]],inversion NUTM2A-AS1 NA PTEN NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -NVL--NVL BS_N6NE6B3W -0.728039375329335 -0.728039375329335 NA NA no change no change NA NA 1:224268034 1:224303857 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.10Mb]],duplication/non-canonical_splicing NVL NA NVL NA NA NA NA NA NA -NYAP2--AC068946.1 BS_81SP2HX4 10.1665573964272 NA NA NA differentially expressed NA NA NA 2:225513672 2:219078206 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr2:6.23Mb]],inversion NYAP2 NA AC068946.1 NA NA NA NA NA NA -NYAP2--DOCK10(270275)/NYAP2(86990) BS_PN2CE34A 13.2087027724615 2.16693111752156 NA 13.2087027724615 differentially expressed differentially expressed NA differentially expressed 2:225513672 2:225312720 ARRIBA frameshift 2 1 medium [],duplication NYAP2 NA DOCK10 NYAP2 NA NA NA NA NA -NYAP2--NHEJ1 BS_81SP2HX4 10.1665573964272 2.93305116183441 NA NA differentially expressed differentially expressed NA NA 2:225513672 2:219078206 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr2:6.24Mb]],inversion NYAP2 NA NHEJ1 NA NA NA NA NA NA -NYAP2--TUBB4BP5(72699)/ANXA5(143289) BS_W644VEVE 10.110463056778 24.0299733193924 NA -0.796784151185166 differentially expressed differentially expressed NA no change 2:225513672 4:121524666 ARRIBA frameshift 2 1 medium [],translocation NYAP2 NA TUBB4BP5 ANXA5 NA NA NA NA NA -OAZ1--FKBP8 BS_W97QQYKQ 0.0221935539672261 -0.425679596684973 NA NA no change no change NA NA 19:2269744 19:18541995 ARRIBA in-frame 3 0 medium [ChimerSeq,GTEx,INTRACHROMOSOMAL[chr19:16.26Mb]],inversion OAZ1 NA FKBP8 NA NA NA NA NA NA -OBSCN--OBSCN BS_WSQMAA33 -0.888759011518853 -0.888759011518853 NA NA no change no change NA NA 1:228250240 1:228213441 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.17Mb]],duplication/non-canonical_splicing OBSCN NA OBSCN NA Kinase, Oncogene, Kinase Kinase, Oncogene, Kinase NA NA NA -OCA2--OCA2 BS_DMZP9G1H 1.00680278701637 1.00680278701637 NA NA no change no change NA NA 15:27844959 15:27926254 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.34Mb]],duplication/non-canonical_splicing OCA2 NA OCA2 NA NA NA NA NA NA -OCA2--OCA2 BS_HCP5C912 0.858731393633442 0.858731393633442 NA NA no change no change NA NA 15:27844959 15:27926254 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.34Mb]],duplication/non-canonical_splicing OCA2 NA OCA2 NA NA NA NA NA NA -OCA2--OCA2 BS_ZR96A4FH 1.15408599682498 1.15408599682498 NA NA no change no change NA NA 15:27844959 15:27926254 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.34Mb]],duplication/non-canonical_splicing OCA2 NA OCA2 NA NA NA NA NA NA -OFCC1--CD44 BS_KE56MMY0 1.39788936275977 4.40527903309253 NA NA no change differentially expressed NA NA 6:9842516 11:35219316 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr6--chr11]],translocation OFCC1 NA CD44 NA NA TumorSuppressorGene, Oncogene NA NA NA -OIP5--PRKAA1 BS_8ZS9F31R 13.9501453664601 2.00589339257116 NA NA differentially expressed differentially expressed NA NA 15:41321066 5:40777586 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr15--chr5]],translocation/3'-3' OIP5 NA PRKAA1 NA NA TumorSuppressorGene, Kinase NA NA NA -OLFM3--OLFM3 BS_3P20Q2C3 0.186989906709774 0.186989906709774 NA NA no change no change NA NA 1:101806076 1:101837025 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.19Mb]],duplication/non-canonical_splicing OLFM3 NA OLFM3 NA NA NA NA NA NA -OLFM3--OLFM3 BS_GS1KR5PK 0.456222546507384 0.456222546507384 NA NA no change no change NA NA 1:101825026 1:101837025 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.19Mb]],duplication/non-canonical_splicing OLFM3 NA OLFM3 NA NA NA NA NA NA -OLFM3--OLFM3 BS_ZR96A4FH 0.00860778532281735 0.00860778532281735 NA NA no change no change NA NA 1:101825026 1:101837025 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.19Mb]],duplication/non-canonical_splicing OLFM3 NA OLFM3 NA NA NA NA NA NA -OMA1--OMA1 BS_7P83Z28P 0.360203206234141 0.360203206234141 NA NA no change no change NA NA 1:58527261 1:58539310 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing OMA1 NA OMA1 NA NA NA NA NA NA -OMA1--OMA1 BS_CXVJK2FY 0.148173092633313 0.148173092633313 NA NA no change no change NA NA 1:58527261 1:58539310 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing OMA1 NA OMA1 NA NA NA NA NA NA -OPCML--ADGRL1 BS_09R7GDA7 1.65684127384806 0.659512892749383 NA NA no change no change NA NA 11:132657087 19:14177744 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr11--chr19]],translocation OPCML NA ADGRL1 NA TumorSuppressorGene, Oncogene NA NA NA NA -OPCML--OPCML BS_ZA9XT151 -0.610699371770599 -0.610699371770599 NA NA no change no change NA NA 11:132436086 11:132437359 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:1.12Mb]],duplication/non-canonical_splicing OPCML NA OPCML NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA -ORAOV1--AP000439.1(17115)/AP000439.4(5740) BS_23QW0BBA 5.28193890089531 0.528912024605222 NA NA differentially expressed no change NA NA 11:69675190 11:69461858 ARRIBA frameshift 10 0 medium [],inversion ORAOV1 NA AP000439.1 AP000439.4 Oncogene NA NA NA NA -OSBP2--WBP1L BS_P4D8Y3S8 0.328482654854299 1.88963410320396 NA NA no change no change NA NA 22:30741369 10:102797993 ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr22--chr10]],translocation OSBP2 NA WBP1L NA NA NA NA NA NA -OSBP2--WBP1L BS_P4D8Y3S8 0.328482654854299 1.88963410320396 NA NA no change no change NA NA 22:30695553 10:102797993 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr22--chr10]],translocation OSBP2 NA WBP1L NA NA NA NA NA NA -OSBPL3--AL022396.1(42365)/CD83(67990) BS_1N9XZXGE 1.80663887015723 NA NA -0.638176001654366 no change NA NA no change 7:24979886 6:14049266 ARRIBA other 7 3 high [],translocation OSBPL3 NA AL022396.1 CD83 Oncogene NA NA NA NA -OSBPL3--AL022396.1(96375)/CD83(13980) BS_1N9XZXGE 1.80663887015723 NA NA -0.638176001654366 no change NA NA no change 7:24979886 6:14103276 ARRIBA other 2 0 medium [],translocation OSBPL3 NA AL022396.1 CD83 Oncogene NA NA NA NA -OSBPL5--MTND6P25(269054)/AP002802.2(16956) BS_5PJCHF6V 0.706655622017765 NA NA NA no change NA NA NA 11:3165216 11:81825479 ARRIBA other 13 0 high [],inversion OSBPL5 NA MTND6P25 AP002802.2 NA NA NA NA NA -OSBPL6--NRP2 BS_29X4ZX6Q 3.66181080972374 4.75651813093306 NA NA differentially expressed differentially expressed NA NA 2:178306286 2:205683091 ARRIBA frameshift 33 1 high [INTRACHROMOSOMAL[chr2:27.28Mb]],deletion OSBPL6 NA NRP2 NA NA NA NA NA NA -OSBPL6--NRP2 BS_29X4ZX6Q 3.66181080972374 4.75651813093306 NA NA differentially expressed differentially expressed NA NA 2:178306286 2:205697544 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:27.28Mb]],deletion OSBPL6 NA NRP2 NA NA NA NA NA NA -OSBPL6--PARD3B(29942)/NRP2(31886) BS_29X4ZX6Q 3.66181080972374 -0.642074322436984 NA 4.75651813093306 differentially expressed no change NA differentially expressed 2:178306286 2:205650104 ARRIBA frameshift 10 0 high [],deletion OSBPL6 NA PARD3B NRP2 NA NA NA NA NA -OSBPL9--AL592045.1(32910)/MIXL1(1487) BS_VVTHDRBD -0.00225303492110324 NA NA 10.929380199741 no change NA NA differentially expressed 1:51760780 1:226222131 ARRIBA frameshift 2 0 medium [],deletion OSBPL9 NA AL592045.1 MIXL1 NA NA NA Oncogene, TranscriptionFactor NA -OTUD4--AC097372.3 BS_ZZWMD6FA 1.12566959786387 NA NA NA no change NA NA NA 4:145159503 4:146093968 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr4:0.90Mb]],duplication OTUD4 NA AC097372.3 NA NA NA NA NA NA -OXSR1--SCFD2 BS_1D6PZNKN 2.11289154815803 6.22466109042114 NA NA differentially expressed differentially expressed NA NA 3:38251471 4:52920870 ARRIBA in-frame 19 0 high [INTERCHROMOSOMAL[chr3--chr4]],translocation OXSR1 NA SCFD2 NA Kinase NA NA NA NA -OXSR1--SCFD2 BS_1D6PZNKN 2.11289154815803 6.22466109042114 NA NA differentially expressed differentially expressed NA NA 3:38250018 4:52920870 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr3--chr4]],translocation OXSR1 NA SCFD2 NA Kinase NA NA NA NA -P2RY6--EHBP1L1 BS_KBT7MQ6H 3.59517249163347 1.97039746331369 NA NA differentially expressed no change NA NA 11:73292920 11:65584959 ARRIBA other 10 0 high [INTRACHROMOSOMAL[chr11:7.67Mb]],duplication P2RY6 NA EHBP1L1 NA NA NA NA NA NA -P3H2--P3H2 BS_61E80SD6 0.444208779751239 0.444208779751239 NA NA no change no change NA NA 3:189986788 3:189995442 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.17Mb]],duplication/non-canonical_splicing P3H2 NA P3H2 NA NA NA NA NA NA -PACRG--LINC00271(80534)/AL133319.1(10559) BS_W4HGV6E7 3.40372253215831 5.48865476617296 NA NA differentially expressed differentially expressed NA NA 6:162814281 6:135796589 ARRIBA frameshift 42 11 high [],inversion PACRG NA LINC00271 AL133319.1 TumorSuppressorGene NA NA NA NA -PACRG--LINC00271(80534)/AL133319.1(10559) BS_W4HGV6E7 3.40372253215831 5.48865476617296 NA NA differentially expressed differentially expressed NA NA 6:162814281 6:135796589 ARRIBA frameshift 1 5 medium [],inversion PACRG NA LINC00271 AL133319.1 TumorSuppressorGene NA NA NA NA -PAG1--AC021355.1(139057)/GFRA2(241897) BS_HZRM07TW 1.30192669907238 NA NA 0.472942066288611 no change NA NA no change 8:81111591 8:21448506 ARRIBA other 6 0 high [],deletion PAG1 NA AC021355.1 GFRA2 NA NA NA NA NA -PAG1--AC103719.1(30877)/AC021613.1(70055) BS_HZRM07TW 1.30192669907238 NA NA NA no change NA NA NA 8:81111591 8:21059935 ARRIBA other 2 0 medium [],deletion PAG1 NA AC103719.1 AC021613.1 NA NA NA NA NA -PAG1--HNF4G BS_HZRM07TW 1.30192669907238 1.83010436356232 NA NA no change no change NA NA 8:81029996 8:75416464 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:5.40Mb]],inversion PAG1 NA HNF4G NA NA TranscriptionFactor NA NA NA -PAGE5--AL805961.2(144552)/EEF1DP6(11468) BS_RCCN63K6 33.7231309491664 NA NA -0.0782955171246744 differentially expressed NA NA no change X:55221463 1:4164060 ARRIBA frameshift 8 2 high [],translocation PAGE5 NA AL805961.2 EEF1DP6 NA NA NA NA NA -PAIP1--GABRB1 BS_NJ4WPQVK 0.68246189320463 0.753133896231286 NA NA no change no change NA NA 5:43547728 4:47161249 ARRIBA in-frame 14 0 high [INTERCHROMOSOMAL[chr5--chr4]],translocation PAIP1 NA GABRB1 NA NA NA NA NA NA -PAK2--PIGX BS_3X9WMZGJ 2.74157619435273 1.072849179635 NA NA differentially expressed no change NA NA 3:196782833 3:196716858 ARRIBA in-frame 1 1 low [CCLE,INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:+:[3850]],duplication PAK2 NA PIGX NA Kinase, Kinase NA NA NA NA -PALD1--CTBP2 BS_4QW2S1Q8 2.55542253360854 1.01811578426575 NA NA differentially expressed no change NA NA 10:70479059 10:125039155 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:54.42Mb]],inversion PALD1 NA CTBP2 NA NA NA NA NA NA -PALD1--CTBP2 BS_MX23ZY0Y -0.934462876280847 2.3023979410894 NA NA no change differentially expressed NA NA 10:70479059 10:125039155 ARRIBA other 7 0 high [INTRACHROMOSOMAL[chr10:54.42Mb]],inversion PALD1 NA CTBP2 NA NA NA NA NA NA -PALD1--CTBP2 BS_P9JP6JFA -3.40188287475014 0.791078273635251 NA NA differentially expressed no change NA NA 10:70479059 10:125039155 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:54.42Mb]],inversion PALD1 NA CTBP2 NA NA NA NA NA NA -PALM--AC005256.1(702)/ONECUT3(2926) BS_YBJBSRHV -1.52721861080008 -0.103005727105726 NA -0.0774282589313127 no change no change NA no change 19:747977 19:1749447 ARRIBA other 2 1 medium [],deletion PALM NA AC005256.1 ONECUT3 NA NA NA TranscriptionFactor NA -PALM--THEG(7931)/AC010641.1(12988) BS_4PH1MBGR -1.00078457282719 -0.315580982837333 NA -0.150689438227176 no change no change NA no change 19:709151 19:384601 ARRIBA frameshift 3 0 medium [],duplication PALM NA THEG AC010641.1 NA NA NA NA NA -PALM2-AKAP2--PALM2 BS_84XCR9GG 7.64462625604636 4.10946689661164 NA NA differentially expressed differentially expressed NA NA 9:110016039 9:109780488 ARRIBA frameshift 3 2 medium [INTRACHROMOSOMAL[chr9:0.17Mb]],duplication PALM2-AKAP2 NA PALM2 NA NA NA NA NA NA -PALM2-AKAP2--PALM2 BS_84XCR9GG 7.64462625604636 4.10946689661164 NA NA differentially expressed differentially expressed NA NA 9:109943381 9:109942686 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr9:0.17Mb]],duplication PALM2-AKAP2 NA PALM2 NA NA NA NA NA NA -PALM2-AKAP2--PALM2 BS_84XCR9GG 7.64462625604636 4.10946689661164 NA NA differentially expressed differentially expressed NA NA 9:110016039 9:109942686 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.17Mb]],duplication PALM2-AKAP2 NA PALM2 NA NA NA NA NA NA -PALM2-AKAP2--PALM2 BS_84XCR9GG 7.64462625604636 4.10946689661164 NA NA differentially expressed differentially expressed NA NA 9:109932028 9:109923735 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.17Mb]],duplication PALM2-AKAP2 NA PALM2 NA NA NA NA NA NA -PALM2-AKAP2--PALM2 BS_E60JZ9Z3 7.28735394022734 4.14275789931527 NA NA differentially expressed differentially expressed NA NA 9:110016039 9:109780488 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr9:0.17Mb]],duplication PALM2-AKAP2 NA PALM2 NA NA NA NA NA NA -PALM2-AKAP2--PALM2 BS_E60JZ9Z3 7.28735394022734 4.14275789931527 NA NA differentially expressed differentially expressed NA NA 9:109932028 9:109780488 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.17Mb]],duplication PALM2-AKAP2 NA PALM2 NA NA NA NA NA NA -PALM2-AKAP2--PALM2 BS_E60JZ9Z3 7.28735394022734 4.14275789931527 NA NA differentially expressed differentially expressed NA NA 9:109943381 9:109931927 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.17Mb]],duplication PALM2-AKAP2 NA PALM2 NA NA NA NA NA NA -PAM--PTTG1IP BS_JAEM78XS 0.214393606303339 1.49729629725654 NA NA no change no change NA NA 5:102755348 21:44851627 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr5--chr21]],translocation PAM NA PTTG1IP NA NA Oncogene NA NA NA -PAPD7--FAM110C(10641) BS_NJ4WPQVK 1.20256361196994 -1.37610447240353 NA NA no change no change NA NA 5:6714699 2:28173 ARRIBA frameshift 7 0 high [],translocation PAPD7 NA FAM110C NA NA NA NA NA NA -PAPPA2--PAPPA2 BS_4T0HPZDC 12.9786331723958 12.9786331723958 NA NA differentially expressed differentially expressed NA NA 1:176765837 1:176702607 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing PAPPA2 NA PAPPA2 NA Oncogene Oncogene NA NA NA -PAPPA2--PAPPA2 BS_7BTZQKYY 12.0804472478924 12.0804472478924 NA NA differentially expressed differentially expressed NA NA 1:176595595 1:176555407 ARRIBA frameshift 10 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing PAPPA2 NA PAPPA2 NA Oncogene Oncogene NA NA NA -PAPPA2--PAPPA2 BS_S1M423AB 27.4104640808702 27.4104640808702 NA NA differentially expressed differentially expressed NA NA 1:176765837 1:176702607 ARRIBA frameshift 17 9 low [SELFIE,INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing PAPPA2 NA PAPPA2 NA Oncogene Oncogene NA NA NA -PAPPA2--PAPPA2 BS_SDA4RMMG 4.13104799735119 4.13104799735119 NA NA differentially expressed differentially expressed NA NA 1:176595595 1:176555407 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing PAPPA2 NA PAPPA2 NA Oncogene Oncogene NA NA NA -PAPSS1--DKK2 BS_5VQP0E6K 3.70062699181856 20.1281573943202 NA NA differentially expressed differentially expressed NA NA 4:107590329 4:107188525 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr4:0.31Mb]],deletion PAPSS1 NA DKK2 NA Kinase NA NA NA NA -PARD3--AL353600.1(73121)/AC018980.1(163905) BS_QWTE1CWR 1.29687941012548 NA NA NA no change NA NA NA 10:34269657 10:33415026 ARRIBA frameshift 2 0 medium [],deletion PARD3 NA AL353600.1 AC018980.1 NA NA NA NA NA -PARD3--AL353600.1(89081)/AC018980.1(147945) BS_WKESC3XN 2.51233650035442 NA NA NA differentially expressed NA NA NA 10:34269657 10:33430986 ARRIBA frameshift 7 0 high [],deletion PARD3 NA AL353600.1 AC018980.1 NA NA NA NA NA -PARG--BMS1 BS_4W68NV3M 2.99388460943267 1.21443328272442 NA NA differentially expressed no change NA NA 10:49885203 10:42791627 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr10:6.98Mb]],inversion PARG NA BMS1 NA NA NA NA NA NA -PARP11--AC007207.1(1500)/CCND2-AS1(129133) BS_W644VEVE 4.92179106477613 NA NA 2.35256618193704 differentially expressed NA NA differentially expressed 12:3826158 12:4119632 ARRIBA frameshift 4 1 high [],inversion PARP11 NA AC007207.1 CCND2-AS1 NA NA NA Oncogene NA -PARP11--AC007207.1(18891)/CCND2-AS1(111742) BS_W644VEVE 4.92179106477613 NA NA 2.35256618193704 differentially expressed NA NA differentially expressed 12:3873212 12:4137023 ARRIBA frameshift 1 0 low [],duplication PARP11 NA AC007207.1 CCND2-AS1 NA NA NA Oncogene NA -PARP11--AC021054.1 BS_W644VEVE 4.92179106477613 NA NA NA differentially expressed NA NA NA 12:3826158 12:663317 ARRIBA frameshift 20 7 high [INTRACHROMOSOMAL[chr12:3.13Mb]],inversion PARP11 NA AC021054.1 NA NA NA NA NA NA -PARP11--ERC1 BS_W644VEVE 4.92179106477613 3.38205052943934 NA NA differentially expressed differentially expressed NA NA 12:3873212 12:1027748 ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chr12:2.30Mb]],inversion PARP11 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA -PARP11--ERC1 BS_W644VEVE 4.92179106477613 3.38205052943934 NA NA differentially expressed differentially expressed NA NA 12:3826158 12:1104750 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr12:2.30Mb]],inversion PARP11 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA -PARP11--HSPA8P5(8972)/AC007207.1(1170) BS_W644VEVE 4.92179106477613 46.0377951266061 NA NA differentially expressed differentially expressed NA NA 12:3826158 12:4108491 ARRIBA frameshift 4 1 high [],inversion PARP11 NA HSPA8P5 AC007207.1 NA NA NA NA NA -PARP11--XPC BS_VF5XWFXD 5.52510680864233 0.561760017723814 NA NA differentially expressed no change NA NA 12:3806303 3:14160548 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr12--chr3]],translocation PARP11 NA XPC NA NA CosmicCensus, Oncogene NA NA NA -PARVA--OR7E14P BS_KE56MMY0 4.60653248378714 2.94307658564788 NA NA differentially expressed differentially expressed NA NA 11:12377783 11:17052032 ARRIBA frameshift 12 0 high [INTRACHROMOSOMAL[chr11:4.48Mb]],deletion PARVA NA OR7E14P NA NA NA NA NA NA -PARVB--PNPLA3 BS_7BTZQKYY -0.923927609564551 -0.181168669078721 NA NA no change no change NA NA 22:43999673 22:43963286 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr22:0.03Mb],LOCAL_REARRANGEMENT:+:[34723]],duplication PARVB NA PNPLA3 NA Oncogene NA NA NA NA -PATJ--PATJ BS_WRQHPSXQ NA NA NA NA NA NA NA NA 1:61914664 1:61856030 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.44Mb]],duplication/non-canonical_splicing PATJ NA PATJ NA Oncogene Oncogene NA NA NA -PATJ--PRF1 BS_8NY9J9NQ NA 0.302280481571868 NA NA NA no change NA NA 1:61856239 10:70598888 ARRIBA in-frame 3 0 high [INTERCHROMOSOMAL[chr1--chr10]],translocation/5'-5' PATJ NA PRF1 NA Oncogene CosmicCensus, Oncogene NA NA NA -PAX3--AC068489.1(108911)/AC009302.1(193499) BS_2A162JH9 9.26183624232974 -0.0416358721398405 NA NA differentially expressed no change NA NA 2:222294167 2:221750724 ARRIBA frameshift 9 2 medium [],deletion PAX3 NA AC068489.1 AC009302.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -PAX3--AC068489.1(108911)/AC009302.1(193499) BS_BWBDH9GM 9.07174413870486 -0.0416358721398405 NA NA differentially expressed no change NA NA 2:222294167 2:221750724 ARRIBA frameshift 6 2 medium [],deletion PAX3 NA AC068489.1 AC009302.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -PAX3--AC079834.1(17527)/AC068489.1(27155) BS_2A162JH9 9.26183624232974 -0.0862444200531154 NA -0.0416358721398405 differentially expressed no change NA no change 2:222294167 2:221610388 ARRIBA frameshift 2 1 medium [],deletion PAX3 NA AC079834.1 AC068489.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -PAX3--AC079834.2(13033)/AC079834.1(4954) BS_2A162JH9 9.26183624232974 NA NA -0.0862444200531154 differentially expressed NA NA no change 2:222294167 2:221587487 ARRIBA frameshift 39 6 high [],deletion PAX3 NA AC079834.2 AC079834.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -PAX3--AC079834.2(13033)/AC079834.1(4954) BS_BWBDH9GM 9.07174413870486 NA NA -0.0862444200531154 differentially expressed NA NA no change 2:222294167 2:221587487 ARRIBA frameshift 40 5 high [],deletion PAX3 NA AC079834.2 AC079834.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -PAX3--AC079834.2(13033)/AC079834.1(4954) BS_D29RPBSZ 8.34827712293935 NA NA 16.6583405658187 differentially expressed NA NA differentially expressed 2:222294167 2:221587487 ARRIBA frameshift 5 0 high [],deletion PAX3 NA AC079834.2 AC079834.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -PAX3--AC079834.2(13033)/AC079834.1(4954) BS_VF5XWFXD 7.88269203621753 NA NA -0.0862444200531154 differentially expressed NA NA no change 2:222294167 2:221587487 ARRIBA frameshift 6 0 high [],deletion PAX3 NA AC079834.2 AC079834.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -PAX3--NCOA1 BS_4JWBB28H 7.82990399075702 2.41645528213689 NA NA differentially expressed differentially expressed NA NA 2:222220140 2:24710931 ARRIBA in-frame 83 20 high [Cosmic,ChimerPub,ChimerSeq,ChimerKB,chimerdb_pubmed,INTRACHROMOSOMAL[chr2:197.43Mb]],inversion PAX3 NA NCOA1 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -PAX3--NCOA1 BS_Q9V7A95C 7.27268300423548 2.88133428219589 NA NA differentially expressed differentially expressed NA NA 2:222220140 2:24710931 ARRIBA in-frame 78 11 high [Cosmic,ChimerPub,ChimerSeq,ChimerKB,chimerdb_pubmed,INTRACHROMOSOMAL[chr2:197.43Mb]],inversion PAX3 NA NCOA1 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -PAX3--NCOA2 BS_K81DR8XG 6.25722030898709 3.29500313179703 NA NA differentially expressed differentially expressed NA NA 2:222220140 8:70148483 ARRIBA in-frame 26 2 high [ChimerKB,Cosmic,ChimerPub,INTERCHROMOSOMAL[chr2--chr8]],translocation PAX3 NA NCOA2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -PAX3--NCOA2 BS_K81DR8XG 6.25722030898709 3.29500313179703 NA NA differentially expressed differentially expressed NA NA 2:222294167 8:70144848 ARRIBA in-frame 1 0 low [ChimerKB,Cosmic,ChimerPub,INTERCHROMOSOMAL[chr2--chr8]],translocation PAX3 NA NCOA2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -PAX6--SF1 BS_H4NXBD2D 0.552025137101921 -0.741658428566321 NA NA no change no change NA NA 11:31814316 11:64773505 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr11:32.95Mb]],inversion/3'-3' PAX6 NA SF1 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA -PAXBP1P1(299133)/DPP6(138089)--AC092681.1 BS_4W68NV3M -0.0627999201227092 NA 3.02911395698238 NA no change NA differentially expressed NA 7:153749008 7:149892398 ARRIBA other 3 0 medium [],inversion PAXBP1P1 DPP6 AC092681.1 NA NA NA NA NA NA -PAXBP1P1(299133)/DPP6(138089)--AC092681.1 BS_7WNSZNE3 -0.0627999201227092 NA 2.29742945709522 NA no change NA differentially expressed NA 7:153749008 7:149909705 ARRIBA other 3 0 medium [],inversion PAXBP1P1 DPP6 AC092681.1 NA NA NA NA NA NA -PAXBP1P1(299133)/DPP6(138089)--AC092681.1 BS_G7AGNB5G -0.0627999201227092 NA 1.36266240130246 NA no change NA no change NA 7:153749008 7:149891301 ARRIBA other 3 0 medium [],inversion PAXBP1P1 DPP6 AC092681.1 NA NA NA NA NA NA -PAXBP1P1(299133)/DPP6(138089)--AC092681.1 BS_ZXYDSBM9 -0.0627999201227092 NA 1.40680739348917 NA no change NA no change NA 7:153749008 7:149891301 ARRIBA other 7 0 high [],inversion PAXBP1P1 DPP6 AC092681.1 NA NA NA NA NA NA -PBRM1--CLSTN2 BS_QEYPFYHD 6.0991457324796 -0.0561521857816495 NA NA differentially expressed no change NA NA 3:52634758 3:140258853 ARRIBA frameshift 9 0 low [INTRACHROMOSOMAL[chr3:87.25Mb]],duplication/5'-5' PBRM1 NA CLSTN2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -PBRM1--PBRM1 BS_7G42J2SK 4.53482970565797 4.53482970565797 NA NA differentially expressed differentially expressed NA NA 3:52648344 3:52679726 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.14Mb]],duplication/non-canonical_splicing PBRM1 NA PBRM1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -PBRM1--PBRM1 BS_8PNA0V6R 3.37852872723558 3.37852872723558 NA NA differentially expressed differentially expressed NA NA 3:52615351 3:52651810 ARRIBA frameshift 10 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.14Mb]],duplication/non-canonical_splicing PBRM1 NA PBRM1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -PC--AP000797.1(193272)/LINC02151(352136) BS_SXCZ3CXN -2.2855975000214 -0.44373467046872 NA NA differentially expressed no change NA NA 11:66952430 11:116144763 ARRIBA other 3 0 high [],duplication PC NA AP000797.1 LINC02151 NA NA NA NA NA -PCAT29--DRAIC BS_03FT4S8B 1.56878651008494 0.150289751088516 NA NA no change no change NA NA 15:69684442 15:69563116 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_03FT4S8B 1.56878651008494 0.150289751088516 NA NA no change no change NA NA 15:69684442 15:69548354 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_03FT4S8B 1.56878651008494 0.150289751088516 NA NA no change no change NA NA 15:69677640 15:69548354 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_03FT4S8B 1.56878651008494 0.150289751088516 NA NA no change no change NA NA 15:69677640 15:69563116 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_2HN96129 8.78851580487631 5.93690010246958 NA NA differentially expressed differentially expressed NA NA 15:69677640 15:69563116 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_6VPKXXMR 27.5124308737432 9.1844224053176 NA NA differentially expressed differentially expressed NA NA 15:69677640 15:69563116 ARRIBA other 5 2 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_6VPKXXMR 27.5124308737432 9.1844224053176 NA NA differentially expressed differentially expressed NA NA 15:69684442 15:69563116 ARRIBA other 2 3 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_BXXJ9P8C 13.682106024217 8.79086236479768 NA NA differentially expressed differentially expressed NA NA 15:69684442 15:69563116 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_BXXJ9P8C 13.682106024217 8.79086236479768 NA NA differentially expressed differentially expressed NA NA 15:69677640 15:69563116 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_BXXJ9P8C 13.682106024217 8.79086236479768 NA NA differentially expressed differentially expressed NA NA 15:69631735 15:69548354 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_C6ZZ3FY5 4.22762211235127 4.02466729934113 NA NA differentially expressed differentially expressed NA NA 15:69684442 15:69548354 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_ERJAJ0KA 5.57953681118015 5.74533498336986 NA NA differentially expressed differentially expressed NA NA 15:69677640 15:69563116 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_ERJAJ0KA 5.57953681118015 5.74533498336986 NA NA differentially expressed differentially expressed NA NA 15:69684442 15:69548354 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_J483EMFP 13.7781902183365 7.30121795535804 NA NA differentially expressed differentially expressed NA NA 15:69677640 15:69548354 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_MV6ASWV9 12.7956361284031 7.4080500353645 NA NA differentially expressed differentially expressed NA NA 15:69677640 15:69563116 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_WRQHPSXQ 13.1945438962431 3.31580615471298 NA NA differentially expressed differentially expressed NA NA 15:69677640 15:69563116 ARRIBA other 5 2 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_WRQHPSXQ 13.1945438962431 3.31580615471298 NA NA differentially expressed differentially expressed NA NA 15:69684442 15:69563116 ARRIBA other 2 2 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29--DRAIC BS_WRQHPSXQ 13.1945438962431 3.31580615471298 NA NA differentially expressed differentially expressed NA NA 15:69677640 15:69548354 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA -PCAT29(60456)/AC021818.2(47110)--DRAIC BS_6VPKXXMR 27.5124308737432 9.1844224053176 NA NA differentially expressed differentially expressed NA NA 15:69756206 15:69563116 ARRIBA other 4 1 high [],duplication PCAT29 AC021818.2 DRAIC NA NA NA NA NA NA -PCAT29(60456)/AC021818.2(47110)--DRAIC BS_WRQHPSXQ 13.1945438962431 3.31580615471298 NA NA differentially expressed differentially expressed NA NA 15:69756206 15:69563116 ARRIBA other 2 1 high [],duplication PCAT29 AC021818.2 DRAIC NA NA NA NA NA NA -PCBP3--PCBP3 BS_0WVJYM9R 0.171379800252431 0.171379800252431 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 10 0 high [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCBP3--PCBP3 BS_13CGKADW 0.84867750329877 0.84867750329877 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCBP3--PCBP3 BS_2SFTWNVE 0.983430982504551 0.983430982504551 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 9 2 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCBP3--PCBP3 BS_7Z93ZYMS -0.217292706222839 -0.217292706222839 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCBP3--PCBP3 BS_CGB2WS2A 0.752678309712197 0.752678309712197 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 11 0 high [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCBP3--PCBP3 BS_EHVYJAVA -0.350836548473335 -0.350836548473335 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCBP3--PCBP3 BS_FEPRNEXX 1.76213099960672 1.76213099960672 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 27 2 high [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCBP3--PCBP3 BS_G9XE3N9T 1.21617795080261 1.21617795080261 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 8 1 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCBP3--PCBP3 BS_GYA4V1RD 0.308999020460763 0.308999020460763 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 5 1 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCBP3--PCBP3 BS_N6NE6B3W 1.9065470595279 1.9065470595279 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 59 6 high [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCBP3--PCBP3 BS_PKW05VZV 0.738786110541632 0.738786110541632 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 6 0 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCBP3--PCBP3 BS_QTSXW7DA -0.0318876000994973 -0.0318876000994973 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCBP3--PCBP3 BS_SDA4RMMG 0.216901228991747 0.216901228991747 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 7 0 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCBP3--PCBP3 BS_SFKZSJN1 1.15465573550077 1.15465573550077 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 9 1 high [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCBP3--PCBP3 BS_X0F9AYEC 1.13862457460964 1.13862457460964 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 15 0 high [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCBP3--PCBP3 BS_Y7F9E2E9 0.633712165058691 0.633712165058691 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 13 0 high [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCBP3--PCBP3 BS_ZRM0W01M 1.75554617763369 1.75554617763369 NA NA no change no change NA NA 21:45789671 21:45788298 ARRIBA other 25 2 high [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA -PCCA--FGF14 BS_VJ2S5DVS 4.14815933114217 -1.59996010156886 NA NA differentially expressed no change NA NA 13:100449305 13:102297887 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr13:1.18Mb]],deletion/5'-5' PCCA NA FGF14 NA NA Oncogene NA NA NA -PCCA--FGF14-IT1 BS_VJ2S5DVS 4.14815933114217 -0.198614552297052 NA NA differentially expressed no change NA NA 13:100449305 13:102297887 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr13:1.76Mb]],deletion/5'-5' PCCA NA FGF14-IT1 NA NA NA NA NA NA -PCDH11X--PCDH11X BS_7B89YR6K 3.96839187923221 3.96839187923221 NA NA differentially expressed differentially expressed NA NA X:91879273 X:91875136 ARRIBA frameshift 3 0 medium [SELFIE,INTRACHROMOSOMAL[chrX:0.84Mb]],duplication PCDH11X NA PCDH11X NA NA NA NA NA NA -PCDH11Y--PCDH11Y BS_2A162JH9 2.83298961038494 2.83298961038494 NA NA differentially expressed differentially expressed NA NA Y:5100707 Y:5098215 ARRIBA in-frame 3 2 low [SELFIE,INTRACHROMOSOMAL[chrY:0.74Mb]],duplication/non-canonical_splicing PCDH11Y NA PCDH11Y NA NA NA NA NA NA -PCDH11Y--PCDH11Y BS_92VDQ0NE 4.99221452208897 4.99221452208897 NA NA differentially expressed differentially expressed NA NA Y:5100707 Y:5098215 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chrY:0.74Mb]],duplication/non-canonical_splicing PCDH11Y NA PCDH11Y NA NA NA NA NA NA -PCDH11Y--PCDH11Y BS_C7N3J4NW 4.06385598737659 4.06385598737659 NA NA differentially expressed differentially expressed NA NA Y:5100707 Y:5031906 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrY:0.74Mb]],duplication/non-canonical_splicing PCDH11Y NA PCDH11Y NA NA NA NA NA NA -PCDH11Y--PCDH11Y BS_HA20Y4XY 3.14112926784252 3.14112926784252 NA NA differentially expressed differentially expressed NA NA Y:5100707 Y:5098215 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chrY:0.74Mb]],duplication/non-canonical_splicing PCDH11Y NA PCDH11Y NA NA NA NA NA NA -PCDH11Y--PCDH11Y BS_NR3P3GN2 4.13905238825378 4.13905238825378 NA NA differentially expressed differentially expressed NA NA Y:5100707 Y:5098215 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chrY:0.74Mb]],duplication/non-canonical_splicing PCDH11Y NA PCDH11Y NA NA NA NA NA NA -PCDH15--PCDH15 BS_1T19NFJ8 -0.385389027846769 -0.385389027846769 NA NA no change no change NA NA 10:53816239 10:53827548 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr10:1.83Mb]],duplication/non-canonical_splicing PCDH15 NA PCDH15 NA NA NA NA NA NA -PCDH15--PCDH15 BS_24AHZ9ZW 1.19128360975836 1.19128360975836 NA NA no change no change NA NA 10:54183444 10:54214048 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr10:1.83Mb]],duplication/non-canonical_splicing PCDH15 NA PCDH15 NA NA NA NA NA NA -PCDH15--PCDH15 BS_6T4JGBGY 2.42971895254902 2.42971895254902 NA NA differentially expressed differentially expressed NA NA 10:54527812 10:54528402 ARRIBA in-frame 32 5 low [SELFIE,INTRACHROMOSOMAL[chr10:1.83Mb]],duplication/non-canonical_splicing PCDH15 NA PCDH15 NA NA NA NA NA NA -PCDH15--PCDH15 BS_FWMJPKCV 5.22799000004081 5.22799000004081 NA NA differentially expressed differentially expressed NA NA 10:53816239 10:53827548 ARRIBA frameshift 17 3 low [SELFIE,INTRACHROMOSOMAL[chr10:1.83Mb]],duplication/non-canonical_splicing PCDH15 NA PCDH15 NA NA NA NA NA NA -PCDH15--PCDH15 BS_KVNGNETA 1.28101055771579 1.28101055771579 NA NA no change no change NA NA 10:53938815 10:54023197 ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr10:1.83Mb]],duplication/non-canonical_splicing PCDH15 NA PCDH15 NA NA NA NA NA NA -PCDH17--FRY BS_Y8D1F5WW 11.039879145096 -0.418686008386891 NA NA differentially expressed no change NA NA 13:57666833 13:32211097 ARRIBA frameshift 5 3 medium [INTRACHROMOSOMAL[chr13:25.33Mb]],inversion/3'-3' PCDH17 NA FRY NA TumorSuppressorGene NA NA NA NA -PCDH18--FER BS_3BDAG9YN 14.3051070598085 7.19072811929787 NA NA differentially expressed differentially expressed NA NA 4:137532255 5:108867767 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr4--chr5]],translocation PCDH18 NA FER NA NA Kinase, Kinase NA NA NA -PCDH7--NIPAL1 BS_MN5XVP5A 4.30647448400172 1.55237284091447 NA NA differentially expressed no change NA NA 4:30724596 4:48025068 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr4:16.77Mb]],deletion PCDH7 NA NIPAL1 NA NA NA NA NA NA -PCDH9--DYNC2H1(159222)/AP002989.1(36909) BS_W60RQAKK 2.37788022133083 -2.16273174637886 NA NA differentially expressed differentially expressed NA NA 13:66631210 11:103639085 ARRIBA frameshift 3 0 high [],translocation PCDH9 NA DYNC2H1 AP002989.1 TumorSuppressorGene NA NA NA NA -PCDH9--FBXW7 BS_QB84TBA3 0.285458096394338 0.631758022707921 NA NA no change no change NA NA 13:67225405 4:152411872 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr13--chr4]],translocation PCDH9 NA FBXW7 NA TumorSuppressorGene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -PCDH9--PDGFD BS_W60RQAKK 2.37788022133083 2.42466995339057 NA NA differentially expressed differentially expressed NA NA 13:66631210 11:103909819 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr13--chr11]],translocation PCDH9 NA PDGFD NA TumorSuppressorGene NA NA NA NA -PCDH9--TPT1-AS1 BS_TXZ7KHTQ 2.72082122502083 -1.10512232407116 NA NA differentially expressed no change NA NA 13:67225405 13:45369959 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr13:20.91Mb]],inversion PCDH9 NA TPT1-AS1 NA TumorSuppressorGene NA NA NA NA -PCDH9--TPT1-AS1 BS_TXZ7KHTQ 2.72082122502083 -1.10512232407116 NA NA differentially expressed no change NA NA 13:67225405 13:45377061 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr13:20.91Mb]],inversion PCDH9 NA TPT1-AS1 NA TumorSuppressorGene NA NA NA NA -PCGF6--LINC01515 BS_MX23ZY0Y 1.30280733528132 7.3510656964377 NA NA no change differentially expressed NA NA 10:103345024 10:65572935 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr10:37.53Mb]],inversion PCGF6 NA LINC01515 NA TranscriptionFactor NA NA NA NA -PCGF6--LINC01515 BS_MX23ZY0Y 1.30280733528132 7.3510656964377 NA NA no change differentially expressed NA NA 10:103345024 10:65585485 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr10:37.53Mb]],inversion PCGF6 NA LINC01515 NA TranscriptionFactor NA NA NA NA -PCGF6--LINC01515 BS_MX23ZY0Y 1.30280733528132 7.3510656964377 NA NA no change differentially expressed NA NA 10:103333925 10:65585485 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:37.53Mb]],inversion PCGF6 NA LINC01515 NA TranscriptionFactor NA NA NA NA -PCID2--CALN1 BS_K17VQECG -0.0222075005596104 -1.50550914501973 NA NA no change no change NA NA 13:113190872 7:72023769 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr13--chr7]],translocation PCID2 NA CALN1 NA NA NA NA NA NA -PCID2--CALN1 BS_K17VQECG -0.0222075005596104 -1.50550914501973 NA NA no change no change NA NA 13:113185485 7:72023769 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr13--chr7]],translocation PCID2 NA CALN1 NA NA NA NA NA NA -PCID2--CALN1 BS_K17VQECG -0.0222075005596104 -1.50550914501973 NA NA no change no change NA NA 13:113195071 7:72023769 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr13--chr7]],translocation PCID2 NA CALN1 NA NA NA NA NA NA -PCLO--PCLO BS_J71N7D09 3.38875573006788 3.38875573006788 NA NA differentially expressed differentially expressed NA NA 7:82902651 7:82916873 ARRIBA frameshift 15 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.41Mb]],duplication/non-canonical_splicing PCLO NA PCLO NA NA NA NA NA NA -PCM1--MTUS1 BS_QRDT19KS 1.96778056135026 0.336142070865778 NA NA no change no change NA NA 8:17957775 8:17775286 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/5'-5' PCM1 NA MTUS1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA NA -PCNX1--DPF3 BS_VMQMGSJY NA 1.71626445126886 NA NA NA no change NA NA 14:71089342 14:72727928 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr14:1.50Mb]],deletion/5'-5' PCNX1 NA DPF3 NA NA TranscriptionFactor NA NA NA -PCNX1--MNAT1 BS_ZVZDDW2G NA 0.148214743588275 NA NA NA no change NA NA 14:70947123 14:60796217 ARRIBA in-frame 51 4 high [INTRACHROMOSOMAL[chr14:9.94Mb]],duplication PCNX1 NA MNAT1 NA NA Oncogene NA NA NA -PCNX3--OR8U1(2595)/OR8L1P(2487) BS_P9JP6JFA NA -0.105162273431458 NA -0.0699588681669783 NA no change NA no change 11:65618179 11:56379148 ARRIBA frameshift 3 0 low [],duplication PCNX3 NA OR8U1 OR8L1P NA NA NA NA NA -PCOLCE(2939)/MOSPD3(988)--AC093817.1 BS_81SP2HX4 2.16304626360514 NA 2.72764320866307 NA differentially expressed NA differentially expressed NA 7:100611114 4:157637998 ARRIBA other 14 0 medium [],translocation PCOLCE MOSPD3 AC093817.1 NA NA NA NA NA NA -PCOLCE(2939)/MOSPD3(988)--AC093817.1 BS_W644VEVE -0.0564200447516434 NA 1.11471897574759 NA no change NA no change NA 7:100611114 4:157637998 ARRIBA other 33 0 medium [],translocation PCOLCE MOSPD3 AC093817.1 NA NA NA NA NA NA -PCP4--IGSF5 BS_5PEFNDCY -0.755040244226448 0.0608101663731 NA NA no change no change NA NA 21:39867510 21:39765535 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr21:0.07Mb],LOCAL_REARRANGEMENT:+:[65221]],duplication PCP4 NA IGSF5 NA NA NA NA NA NA -PCSK6--LINC01823(266367)/AC062020.1(1002252) BS_4B0BAVTX 0.998370847243328 NA NA -0.0610228709485396 no change NA NA no change 15:101366196 2:122063069 ARRIBA frameshift 3 0 high [],translocation PCSK6 NA LINC01823 AC062020.1 NA NA NA NA NA -PCYT1B--PCYT1B BS_RHD7XPNP 1.34309290422308 1.34309290422308 NA NA no change no change NA NA X:24575130 X:24619084 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.11Mb]],duplication/non-canonical_splicing PCYT1B NA PCYT1B NA NA NA NA NA NA -PCYT1B--PCYT1B BS_W36RZSFA 0.792538419418317 0.792538419418317 NA NA no change no change NA NA X:24575130 X:24619084 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.11Mb]],duplication/non-canonical_splicing PCYT1B NA PCYT1B NA NA NA NA NA NA -PDCD6IP--PXYLP1 BS_FAQQ0GCQ 1.51582497202929 3.3065798555765 NA NA no change differentially expressed NA NA 3:33828969 3:141287314 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr3:107.36Mb]],deletion PDCD6IP NA PXYLP1 NA NA NA NA NA NA -PDE10A--EZR-AS1 BS_1D6PZNKN 1.97011512794729 9.96814880218889 NA NA no change differentially expressed NA NA 6:165661947 6:158820472 ARRIBA other 52 5 high [INTRACHROMOSOMAL[chr6:6.51Mb]],inversion PDE10A NA EZR-AS1 NA NA NA NA NA NA -PDE10A--EZR-AS1 BS_1D6PZNKN 1.97011512794729 9.96814880218889 NA NA no change differentially expressed NA NA 6:165576412 6:158820472 ARRIBA frameshift 16 6 high [INTRACHROMOSOMAL[chr6:6.51Mb]],inversion PDE10A NA EZR-AS1 NA NA NA NA NA NA -PDE10A--OSTCP1 BS_1D6PZNKN 1.97011512794729 1.00687159375909 NA NA no change no change NA NA 6:165661947 6:158844173 ARRIBA other 46 2 high [INTRACHROMOSOMAL[chr6:6.47Mb]],inversion/5'-5' PDE10A NA OSTCP1 NA NA NA NA NA NA -PDE10A--PDE10A BS_39CGACC7 -0.193481143332168 -0.193481143332168 NA NA no change no change NA NA 6:165336123 6:165543568 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA -PDE10A--PDE10A BS_3MS8WVNR 1.78566123061352 1.78566123061352 NA NA no change no change NA NA 6:165379194 6:165388453 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA -PDE10A--PDE10A BS_8PNA0V6R -0.0313375866486355 -0.0313375866486355 NA NA no change no change NA NA 6:165379194 6:165388453 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA -PDE10A--PDE10A BS_AMQGM1V9 0.306096997786366 0.306096997786366 NA NA no change no change NA NA 6:165379194 6:165388453 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA -PDE10A--PDE10A BS_EFE4YEK3 0.888456234909766 0.888456234909766 NA NA no change no change NA NA 6:165379194 6:165388453 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA -PDE10A--PDE10A BS_KPT2WPHW 0.169607095367107 0.169607095367107 NA NA no change no change NA NA 6:165379194 6:165388453 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA -PDE10A--PDE10A BS_KX6J8TRK 2.1415293930785 2.1415293930785 NA NA differentially expressed differentially expressed NA NA 6:165379194 6:165388453 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA -PDE10A--PDE10A BS_QC3XCE6X 0.0123052960896575 0.0123052960896575 NA NA no change no change NA NA 6:165379194 6:165388453 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA -PDE10A--PDE10A BS_QWNBZ9RJ 1.53897339352639 1.53897339352639 NA NA no change no change NA NA 6:165379194 6:165388453 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA -PDE3A--R3HDM2 BS_SD8YBRBR 8.5173515535024 0.630543141110464 NA NA differentially expressed no change NA NA 12:20613700 12:57395818 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:36.57Mb]],inversion PDE3A NA R3HDM2 NA NA NA NA NA NA -PDE4D--AC009163.4 BS_JR5ATB7G 9.86495596610285 NA NA NA differentially expressed NA NA NA 5:59988488 16:75451839 ARRIBA frameshift 16 1 high [INTERCHROMOSOMAL[chr5--chr16]],translocation PDE4D NA AC009163.4 NA Oncogene NA NA NA NA -PDE4D--TMEM170A BS_JR5ATB7G 9.86495596610285 1.94670608979934 NA NA differentially expressed no change NA NA 5:59988488 16:75451839 ARRIBA frameshift 18 3 high [INTERCHROMOSOMAL[chr5--chr16]],translocation PDE4D NA TMEM170A NA Oncogene NA NA NA NA -PDGFB--LRP1 BS_CZ82ANWP 5.64012209355913 2.90643787036364 NA NA differentially expressed differentially expressed NA NA 22:39230084 12:57138459 ARRIBA in-frame 137 17 high [INTERCHROMOSOMAL[chr22--chr12]],translocation PDGFB NA LRP1 NA CosmicCensus, Oncogene NA NA NA NA -PDGFC--AC017037.3(111137)/AC017037.4(16108) BS_4QW2S1Q8 3.72105701816914 NA NA NA differentially expressed NA NA NA 4:156970786 4:157929709 ARRIBA frameshift 12 1 high [],duplication PDGFC NA AC017037.3 AC017037.4 NA NA NA NA NA -PDGFC--PRDM5 BS_4QW2S1Q8 3.72105701816914 4.80672932073705 NA NA differentially expressed differentially expressed NA NA 4:156970786 4:120799745 ARRIBA frameshift 12 1 high [INTRACHROMOSOMAL[chr4:35.84Mb]],deletion PDGFC NA PRDM5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -PDGFC--PRDM5 BS_P9JP6JFA 7.39710042578583 4.0440431473423 NA NA differentially expressed differentially expressed NA NA 4:156970786 4:120799745 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr4:35.84Mb]],deletion PDGFC NA PRDM5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -PDGFRA--LNX1 BS_RXN5T5YT 5.96554261759033 2.40365154214051 NA NA differentially expressed differentially expressed NA NA 4:54277492 4:53508227 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.53Mb]],inversion PDGFRA NA LNX1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -PDGFRA--SCFD2 BS_1D6PZNKN 5.28675047522802 6.22466109042114 NA NA differentially expressed differentially expressed NA NA 4:54229415 4:52874061 ARRIBA other 151 8 high [INTRACHROMOSOMAL[chr4:0.86Mb]],inversion PDGFRA NA SCFD2 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -PDGFRA--SCFD2 BS_1D6PZNKN 5.28675047522802 6.22466109042114 NA NA differentially expressed differentially expressed NA NA 4:54230606 4:52874061 ARRIBA other 4 9 high [INTRACHROMOSOMAL[chr4:0.86Mb]],inversion PDGFRA NA SCFD2 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -PDHX--R3HDM1 BS_4B0BAVTX -0.263459171973429 0.366210151518393 NA NA no change no change NA NA 11:34970286 2:135602500 ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr11--chr2]],translocation PDHX NA R3HDM1 NA NA NA NA NA NA -PDLIM3--LINC02374(42342)/AC097652.1(52395) BS_V3Z3DB4N 3.33967648048231 NA NA NA differentially expressed NA NA NA 4:185535342 4:187251688 ARRIBA frameshift 5 0 medium [],inversion PDLIM3 NA LINC02374 AC097652.1 NA NA NA NA NA -PDLIM5--AC109925.1(47256)/PDLIM5(34438) BS_V4W81SFC 2.81015094451044 NA NA 2.81015094451044 differentially expressed NA NA differentially expressed 4:94576034 4:94417419 ARRIBA frameshift 1 2 medium [],duplication PDLIM5 NA AC109925.1 PDLIM5 NA NA NA NA NA -PDLIM5--HPGDS(68)/AC109925.1(26889) BS_V4W81SFC 2.81015094451044 1.65428340247716 NA NA differentially expressed no change NA NA 4:94576034 4:94342944 ARRIBA frameshift 4 1 medium [],duplication PDLIM5 NA HPGDS AC109925.1 NA NA NA NA NA -PDLIM5--MCUB BS_JAEM78XS 1.99519336564297 NA NA NA no change NA NA NA 4:94640450 4:109648484 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:14.89Mb]],deletion PDLIM5 NA MCUB NA NA NA NA NA NA -PDS5A--PPM1F BS_K17VQECG 1.6907958235563 1.13367663018374 NA NA no change no change NA NA 4:39976440 22:21946108 ARRIBA in-frame 12 1 high [INTERCHROMOSOMAL[chr4--chr22]],translocation PDS5A NA PPM1F NA NA NA NA NA NA -PDS5A--PPM1F BS_K17VQECG 1.6907958235563 1.13367663018374 NA NA no change no change NA NA 4:39976440 22:21934226 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr4--chr22]],translocation PDS5A NA PPM1F NA NA NA NA NA NA -PDS5A--PPM1F BS_K17VQECG 1.6907958235563 1.13367663018374 NA NA no change no change NA NA 4:39976440 22:21939680 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr4--chr22]],translocation PDS5A NA PPM1F NA NA NA NA NA NA -PDSS2--FIG4 BS_23QW0BBA 3.20411347250763 0.217438410525064 NA NA differentially expressed no change NA NA 6:107458990 6:109768201 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr6:2.23Mb]],duplication/5'-5' PDSS2 NA FIG4 NA TumorSuppressorGene NA NA NA NA -PDXDC2P-NPIPB14P--AC136443.3(3205)/MIR3670-1(2338) BS_FKDQJJB5 NA NA NA NA NA NA NA NA 16:70010751 16:14905379 ARRIBA other 2 0 medium [],deletion PDXDC2P-NPIPB14P NA AC136443.3 MIR3670-1 NA NA NA NA NA -PDZD2--AL390026.1(80840)/BMP6(25079) BS_6JHXXVR7 0.167611614000945 NA NA 0.374264247995306 no change NA NA no change 5:32099862 6:7701718 ARRIBA other 5 0 medium [],translocation PDZD2 NA AL390026.1 BMP6 NA NA NA NA NA -PDZPH1P--LINC02115 BS_KVNGNETA 77.4188735350508 NA NA NA differentially expressed NA NA NA 5:103485744 5:103530408 ARRIBA other 5 2 high [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[1816]],duplication PDZPH1P NA LINC02115 NA NA NA NA NA NA -PDZPH1P--LINC02115 BS_KVNGNETA 77.4188735350508 NA NA NA differentially expressed NA NA NA 5:103526115 5:103530408 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[1816]],duplication PDZPH1P NA LINC02115 NA NA NA NA NA NA -PDZRN3--CASR BS_07ANYSYQ 1.16096340388486 4.68930197698456 NA NA no change differentially expressed NA NA 3:73602354 3:122264102 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:48.56Mb]],duplication/5'-5' PDZRN3 NA CASR NA NA NA NA NA NA -PDZRN3--CASR(5602)/HNRNPA1P23(20378) BS_07ANYSYQ 1.16096340388486 4.68930197698456 NA -0.0870158245737785 no change differentially expressed NA no change 3:73602354 3:122297231 ARRIBA frameshift 2 0 medium [],duplication PDZRN3 NA CASR HNRNPA1P23 NA NA NA NA NA -PDZRN3--HMGB1 BS_AGS1HHGF 3.9597147732885 -1.39788227402936 NA NA differentially expressed no change NA NA 3:73521643 13:30463694 ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr3--chr13]],translocation/3'-3' PDZRN3 NA HMGB1 NA NA Oncogene NA NA NA -PEAK1--LINGO1 BS_Z7Y2466H 6.79644428758628 1.36589882056722 NA NA differentially expressed no change NA NA 15:77158503 15:77735053 ARRIBA frameshift 5 0 high [CCLE,FA_CancerSupp,INTRACHROMOSOMAL[chr15:0.19Mb]],duplication PEAK1 NA LINGO1 NA Kinase NA NA NA NA -PEPD--RNMT(9599)/MC5R(49992) BS_D2K9C7XR 0.419286524694006 2.48423728189518 NA 25.5619321074577 no change differentially expressed NA differentially expressed 19:33391295 18:13774157 ARRIBA frameshift 11 3 high [],translocation PEPD NA RNMT MC5R NA NA NA NA NA -PEX1--GATAD1 BS_69V8P8A0 -1.98078660093675 -1.02836415794094 NA NA no change no change NA NA 7:92492286 7:92457552 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr7:0.03Mb],LOCAL_INVERSION:-:+:[28184]],duplication/3'-3' PEX1 NA GATAD1 NA NA NA NA NA NA -PEX1--GATAD1 BS_92VDQ0NE -0.60719608445123 0.223439876074965 NA NA no change no change NA NA 7:92492286 7:92457552 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:0.03Mb],LOCAL_INVERSION:-:+:[28184]],duplication/3'-3' PEX1 NA GATAD1 NA NA NA NA NA NA -PEX1--GATAD1 BS_9DFBHHB5 -1.48967379584839 -1.12867281476068 NA NA no change no change NA NA 7:92492286 7:92457552 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:0.03Mb],LOCAL_INVERSION:-:+:[28184]],duplication/3'-3' PEX1 NA GATAD1 NA NA NA NA NA NA -PEX1--GATAD1 BS_KPT2WPHW -0.937122979143261 -0.993536361062443 NA NA no change no change NA NA 7:92492286 7:92457552 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:0.03Mb],LOCAL_INVERSION:-:+:[28184]],duplication/3'-3' PEX1 NA GATAD1 NA NA NA NA NA NA -PEX1--GATAD1 BS_NYS8TRCB -1.10292732787796 -0.338420331639761 NA NA no change no change NA NA 7:92492286 7:92457552 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:0.03Mb],LOCAL_INVERSION:-:+:[28184]],duplication/3'-3' PEX1 NA GATAD1 NA NA NA NA NA NA -PEX14--UBIAD1 BS_MN5XVP5A -0.3858734700498 4.10524171265897 NA NA no change differentially expressed NA NA 1:10536297 1:11285644 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.64Mb]],deletion PEX14 NA UBIAD1 NA NA TumorSuppressorGene NA NA NA -PEX5--SLCO1C1 BS_49FQXT2E 1.17043762299047 0.414802871087638 NA NA no change no change NA NA 12:7191700 12:20717132 ARRIBA in-frame 20 4 high [INTRACHROMOSOMAL[chr12:13.48Mb]],deletion PEX5 NA SLCO1C1 NA NA NA NA NA NA -PEX5--SLCO1C1 BS_49FQXT2E 1.17043762299047 0.414802871087638 NA NA no change no change NA NA 12:7191700 12:20711386 ARRIBA frameshift 9 6 high [INTRACHROMOSOMAL[chr12:13.48Mb]],deletion PEX5 NA SLCO1C1 NA NA NA NA NA NA -PEX5--SLCO1C1 BS_49FQXT2E 1.17043762299047 0.414802871087638 NA NA no change no change NA NA 12:7191700 12:20715139 ARRIBA in-frame 2 4 high [INTRACHROMOSOMAL[chr12:13.48Mb]],deletion PEX5 NA SLCO1C1 NA NA NA NA NA NA -PEX5--SLCO1C1 BS_49FQXT2E 1.17043762299047 0.414802871087638 NA NA no change no change NA NA 12:7191358 12:20711386 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:13.48Mb]],deletion PEX5 NA SLCO1C1 NA NA NA NA NA NA -PFKFB3--ZMIZ1 BS_55P8HPYD 1.74240659080767 4.00918909753136 NA NA no change differentially expressed NA NA 10:6220865 10:79312642 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr10:72.81Mb]],deletion PFKFB3 NA ZMIZ1 NA NA Oncogene NA NA NA -PFKFB4--ADAMTS9 BS_QXKRN6CR 0.352739557923718 -0.0693398563297132 NA NA no change no change NA NA 3:48523657 3:64676850 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr3:15.95Mb]],duplication PFKFB4 NA ADAMTS9 NA NA TumorSuppressorGene NA NA NA -PFKFB4--FRMPD4 BS_QXKRN6CR 0.352739557923718 -1.30765097711229 NA NA no change no change NA NA 3:48523701 X:12452074 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr3--chrX]],translocation PFKFB4 NA FRMPD4 NA NA NA NA NA NA -PFKP--AL713851.1(79432)/AC026396.1(289350) BS_31TF0P1N -1.90749126190764 NA NA NA no change NA NA NA 10:3082461 10:2646671 ARRIBA frameshift 2 0 medium [],duplication PFKP NA AL713851.1 AC026396.1 NA NA NA NA NA -PGAP1--DPP4 BS_RRAEQZ97 2.13811582497813 1.10739595052309 NA NA differentially expressed no change NA NA 2:196891110 2:162029057 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr2:34.76Mb]],deletion PGAP1 NA DPP4 NA NA TumorSuppressorGene NA NA NA -PGBD5--ADORA1 BS_GW0GKWMS 0.0574070550661008 2.11167951960767 NA NA no change differentially expressed NA NA 1:230425598 1:203165261 ARRIBA frameshift 24 5 high [INTRACHROMOSOMAL[chr1:27.15Mb]],inversion PGBD5 NA ADORA1 NA NA NA NA NA NA -PGBD5--PGBD5 BS_MKM0EEN1 -0.996579656820816 -0.996579656820816 NA NA no change no change NA NA 1:230332844 1:230357321 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PGBD5 NA PGBD5 NA NA NA NA NA NA -PGLS--PLVAP BS_VJ2S5DVS 0.550699360621173 4.87307751785763 NA NA no change differentially expressed NA NA 19:17517850 19:17370443 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr19:0.13Mb]],duplication/5'-5' PGLS NA PLVAP NA NA NA NA NA NA -PHACTR1--HRASLS2 BS_MKM0EEN1 0.0717632305386956 7.3528802657007 NA NA no change differentially expressed NA NA 6:12749790 11:63553065 ARRIBA frameshift 11 3 high [INTERCHROMOSOMAL[chr6--chr11]],translocation PHACTR1 NA HRASLS2 NA NA TumorSuppressorGene NA NA NA -PHACTR1--HRASLS2 BS_MKM0EEN1 0.0717632305386956 7.3528802657007 NA NA no change differentially expressed NA NA 6:12749790 11:63558660 ARRIBA in-frame 2 5 high [INTERCHROMOSOMAL[chr6--chr11]],translocation PHACTR1 NA HRASLS2 NA NA TumorSuppressorGene NA NA NA -PHACTR1--HRASLS5 BS_MKM0EEN1 0.0717632305386956 -0.0487945955689325 NA NA no change no change NA NA 6:12749790 11:63466372 ARRIBA in-frame 5 1 high [INTERCHROMOSOMAL[chr6--chr11]],translocation PHACTR1 NA HRASLS5 NA NA NA NA NA NA -PHACTR1--HRASLS5 BS_MKM0EEN1 0.0717632305386956 -0.0487945955689325 NA NA no change no change NA NA 6:12749790 11:63468465 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr6--chr11]],translocation PHACTR1 NA HRASLS5 NA NA NA NA NA NA -PHACTR1--PHACTR1 BS_39CGACC7 0.427309151063539 0.427309151063539 NA NA no change no change NA NA 6:12934237 6:12933633 ARRIBA frameshift 9 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.57Mb]],duplication PHACTR1 NA PHACTR1 NA NA NA NA NA NA -PHACTR4--USH2A BS_TRKH2SPE 0.735520030407904 29.5612777592281 NA NA no change differentially expressed NA NA 1:28369825 1:215970776 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr1:187.12Mb]],inversion PHACTR4 NA USH2A NA TumorSuppressorGene NA NA NA NA -PHC2--KDF1 BS_RCCN63K6 1.95498218609027 5.2762926545691 NA NA no change differentially expressed NA NA 1:33330071 1:26955178 ARRIBA frameshift 38 2 high [INTRACHROMOSOMAL[chr1:6.36Mb]],inversion/5'-5' PHC2 NA KDF1 NA NA NA NA NA NA -PHF12--GAS7 BS_FCAKKZ20 3.32128834643133 -1.08325913360013 NA NA differentially expressed no change NA NA 17:28950065 17:9946983 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr17:18.71Mb]],deletion PHF12 NA GAS7 NA NA CosmicCensus, Oncogene NA NA NA -PHF20L1--EYA1 BS_W72364MN 1.25264001215862 3.07103470181176 NA NA no change differentially expressed NA NA 8:132777911 8:71244692 ARRIBA frameshift 13 0 high [INTRACHROMOSOMAL[chr8:61.41Mb]],inversion PHF20L1 NA EYA1 NA NA NA NA NA NA -PHF20L1--EYA1 BS_W72364MN 1.25264001215862 3.07103470181176 NA NA no change differentially expressed NA NA 8:132775645 8:71244692 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr8:61.41Mb]],inversion PHF20L1 NA EYA1 NA NA NA NA NA NA -PHF21A--DISC1FP1 BS_SXCZ3CXN 0.377624783966145 -0.367973037106405 NA NA no change no change NA NA 11:45945840 11:90725813 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr11:44.13Mb]],duplication/5'-5' PHF21A NA DISC1FP1 NA TranscriptionFactor NA NA NA NA -PHF21A--MRE11 BS_JR5ATB7G 1.10414325407976 NA NA NA no change NA NA NA 11:46048287 11:94434072 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr11:48.29Mb]],inversion/5'-5' PHF21A NA MRE11 NA TranscriptionFactor Oncogene NA NA NA -PHKA1--LMTK2 BS_WSQMAA33 3.63737206562447 1.63482118663002 NA NA differentially expressed no change NA NA X:72681347 7:98141397 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chrX--chr7]],translocation/3'-3' PHKA1 NA LMTK2 NA NA Kinase NA NA NA -PHKB--CHD9 BS_VJ2S5DVS 2.97696130140132 5.64409369538003 NA NA differentially expressed differentially expressed NA NA 16:47610920 16:53155926 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr16:5.35Mb]],deletion PHKB NA CHD9 NA NA Oncogene NA NA NA -PHKB--CHD9 BS_VJ2S5DVS 2.97696130140132 5.64409369538003 NA NA differentially expressed differentially expressed NA NA 16:47641692 16:53155926 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr16:5.35Mb]],deletion PHKB NA CHD9 NA NA Oncogene NA NA NA -PHKB--LINC02141(245856)/AC018554.2(57385) BS_23QW0BBA 0.0856249847903898 NA NA NA no change NA NA NA 16:47641090 16:60299829 ARRIBA frameshift 2 0 high [],inversion PHKB NA LINC02141 AC018554.2 NA NA NA NA NA -PHLPP1--GDAP1 BS_9GJ23RHH -2.03252620271219 -1.67976615816774 NA NA differentially expressed no change NA NA 18:62717259 8:74360137 ARRIBA in-frame 16 0 high [INTERCHROMOSOMAL[chr18--chr8]],translocation PHLPP1 NA GDAP1 NA TumorSuppressorGene, Oncogene NA NA NA NA -PHTF2--PHTF2 BS_13CGKADW 0.877546588641285 0.877546588641285 NA NA no change no change NA NA 7:77951712 7:77920279 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA -PHTF2--PHTF2 BS_5PEFNDCY 1.26350361488466 1.26350361488466 NA NA no change no change NA NA 7:77951712 7:77920279 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA -PHTF2--PHTF2 BS_FEPRNEXX 1.89318742610413 1.89318742610413 NA NA no change no change NA NA 7:77951712 7:77920279 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA -PHTF2--PHTF2 BS_FJZPQZ2C 0.333186545426448 0.333186545426448 NA NA no change no change NA NA 7:77922778 7:77840221 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA -PHTF2--PHTF2 BS_HCP5C912 0.762190758499047 0.762190758499047 NA NA no change no change NA NA 7:77951712 7:77920279 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA -PHTF2--PHTF2 BS_K5802F84 1.06072773786827 1.06072773786827 NA NA no change no change NA NA 7:77951712 7:77920279 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA -PHTF2--PHTF2 BS_KVNGNETA 2.65623434704241 2.65623434704241 NA NA differentially expressed differentially expressed NA NA 7:77951712 7:77920279 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA -PHTF2--PHTF2 BS_ME3HKN2C 1.02252458143203 1.02252458143203 NA NA no change no change NA NA 7:77951712 7:77920279 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA -PHTF2--PHTF2 BS_N6NE6B3W 1.62437656129364 1.62437656129364 NA NA no change no change NA NA 7:77951712 7:77920279 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA -PHTF2--PHTF2 BS_S69QZAJR 0.891058442558699 0.891058442558699 NA NA no change no change NA NA 7:77951712 7:77920279 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA -PHTF2--PHTF2 BS_TG93XC55 1.19628297219337 1.19628297219337 NA NA no change no change NA NA 7:77951712 7:77920279 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA -PHTF2--PHTF2 BS_VMMJYN8Z 0.832003901437144 0.832003901437144 NA NA no change no change NA NA 7:77951712 7:77920279 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA -PHTF2--PHTF2 BS_WCRKYV0T 0.709801957109036 0.709801957109036 NA NA no change no change NA NA 7:77951712 7:77920279 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA -PHTF2--PHTF2 BS_ZR96A4FH 0.656358598817161 0.656358598817161 NA NA no change no change NA NA 7:77951712 7:77920279 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA -PHTF2--PHTF2 BS_ZRM0W01M 1.41526340846237 1.41526340846237 NA NA no change no change NA NA 7:77951712 7:77920279 ARRIBA frameshift 4 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA -PI4KA--MDGA2 BS_ZVZDDW2G -1.18673462061397 0.64342072589718 NA NA no change no change NA NA 22:20824326 14:46902933 ARRIBA frameshift 10 2 high [INTERCHROMOSOMAL[chr22--chr14]],translocation/5'-5' PI4KA NA MDGA2 NA Kinase NA NA NA NA -PI4KB--ASH1L BS_KE56MMY0 1.2221657808372 2.59013996456844 NA NA no change differentially expressed NA NA 1:151326172 1:155439068 ARRIBA frameshift 7 2 high [INTRACHROMOSOMAL[chr1:4.01Mb]],duplication PI4KB NA ASH1L NA Kinase TranscriptionFactor NA NA NA -PI4KB--ASH1L BS_KE56MMY0 1.2221657808372 2.59013996456844 NA NA no change differentially expressed NA NA 1:151327271 1:155439068 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr1:4.01Mb]],duplication PI4KB NA ASH1L NA Kinase TranscriptionFactor NA NA NA -PIANP--LANCL1 BS_QX12J6W1 0.862834078355591 3.44231395408549 NA NA no change differentially expressed NA NA 12:6695430 2:210476412 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr12--chr2]],translocation PIANP NA LANCL1 NA NA NA NA NA NA -PIAS2--PIAS2 BS_CZ3NA7KV 1.52674276335804 1.52674276335804 NA NA no change no change NA NA 18:46820933 18:46844839 ARRIBA frameshift 4 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.12Mb]],duplication/non-canonical_splicing PIAS2 NA PIAS2 NA NA NA NA NA NA -PIBF1--PIBF1 BS_HCP5C912 -0.212894845474781 -0.212894845474781 NA NA no change no change NA NA 13:72932698 13:72908531 ARRIBA in-frame 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr13:0.23Mb]],duplication PIBF1 NA PIBF1 NA NA NA NA NA NA -PICALM--TP53AIP1(11532)/ARHGAP32(10129) BS_3DCBDJAT 0.787217424615178 -1.25727985947186 NA -0.210298684483497 no change no change NA no change 11:86022367 11:128954931 ARRIBA frameshift 4 0 high [],inversion PICALM NA TP53AIP1 ARHGAP32 CosmicCensus, Oncogene NA NA NA NA -PID1--BRAF BS_BC936YNZ 1.12235864538734 1.80754609393609 NA NA no change no change NA NA 2:229155818 7:140783157 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr2--chr7]],translocation PID1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -PID1--BRAF BS_BC936YNZ 1.12235864538734 1.80754609393609 NA NA no change no change NA NA 2:229024707 7:140808995 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr2--chr7]],translocation PID1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -PID1--BRAF BS_BC936YNZ 1.12235864538734 1.80754609393609 NA NA no change no change NA NA 2:229155818 7:140787584 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr2--chr7]],translocation PID1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -PID1--RAF1 BS_AP0SZ364 0.670408505812708 0.194351157118852 NA NA no change no change NA NA 2:229155818 3:12599808 ARRIBA in-frame 12 2 high [INTERCHROMOSOMAL[chr2--chr3]],translocation PID1 NA RAF1 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -PIGL--TRPV3 BS_23QW0BBA -0.213589812133594 -1.44351958163832 NA NA no change no change NA NA 17:16299978 17:3526699 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr17:12.66Mb]],duplication/5'-5' PIGL NA TRPV3 NA NA NA NA NA NA -PIGN--PIGN BS_0BXY0F9N 3.38526325189754 3.38526325189754 NA NA differentially expressed differentially expressed NA NA 18:62072673 18:62102902 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.28Mb]],duplication/non-canonical_splicing PIGN NA PIGN NA NA NA NA NA NA -PIGN--PIGN BS_1RXZ3BP7 3.47096007958217 3.47096007958217 NA NA differentially expressed differentially expressed NA NA 18:62101075 18:62148338 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.28Mb]],duplication/non-canonical_splicing PIGN NA PIGN NA NA NA NA NA NA -PIGN--PIGN BS_CZ3NA7KV 4.80037361508013 4.80037361508013 NA NA differentially expressed differentially expressed NA NA 18:62072673 18:62102902 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.28Mb]],duplication/non-canonical_splicing PIGN NA PIGN NA NA NA NA NA NA -PIGQ--DDX11L8(169) BS_PNYN0AYD -0.392680652006998 -0.146317965183865 NA NA no change no change NA NA 16:570096 12:12141 ARRIBA other 2 0 medium [],translocation PIGQ NA DDX11L8 NA NA NA NA NA NA -PIK3C3--PIK3C3 BS_8RCR7Y4B 1.84648779676156 1.84648779676156 NA NA no change no change NA NA 18:42033957 18:41993270 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.13Mb]],duplication/non-canonical_splicing PIK3C3 NA PIK3C3 NA Kinase Kinase NA NA NA -PIK3CB--CLSTN2 BS_VJ2S5DVS -0.0134177956563635 0.0383694030437045 NA NA no change no change NA NA 3:138759173 3:140312697 ARRIBA frameshift 6 1 high [CCLE,INTRACHROMOSOMAL[chr3:1.10Mb]],duplication/5'-5' PIK3CB NA CLSTN2 NA CosmicCensus, Kinase NA NA NA NA -PIK3CB--LINC01449(361201)/INHBA(172460) BS_6JHXXVR7 -1.18074020309755 -0.409203537543301 NA 4.61546500661688 no change no change NA differentially expressed 3:138733361 7:41494708 ARRIBA frameshift 3 0 high [],translocation PIK3CB NA LINC01449 INHBA CosmicCensus, Kinase NA NA NA NA -PIK3IP1--RGS6 BS_ZVZDDW2G -0.394235100558085 -0.215065193461954 NA NA no change no change NA NA 22:31290965 14:72352095 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr22--chr14]],translocation PIK3IP1 NA RGS6 NA NA NA NA NA NA -PIK3IP1--RGS6 BS_ZVZDDW2G -0.394235100558085 -0.215065193461954 NA NA no change no change NA NA 22:31290965 14:72292287 ARRIBA frameshift 2 2 high [INTERCHROMOSOMAL[chr22--chr14]],translocation PIK3IP1 NA RGS6 NA NA NA NA NA NA -PIK3R3--LRRC41 BS_QEYPFYHD 1.91508542965911 1.72539713749334 NA NA no change no change NA NA 1:46080642 1:46303368 ARRIBA in-frame 13 4 high [ChimerSeq,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication PIK3R3 NA LRRC41 NA NA NA NA NA TCGAFusion -PIK3R3--LRRC41 BS_QEYPFYHD 1.91508542965911 1.72539713749334 NA NA no change no change NA NA 1:46080642 1:46298370 ARRIBA frameshift 2 1 medium [ChimerSeq,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication PIK3R3 NA LRRC41 NA NA NA NA NA TCGAFusion -PIK3R3--LRRC41 BS_Z7PKVY9J 1.72790904863474 1.34510771235459 NA NA no change no change NA NA 1:46080642 1:46303394 ARRIBA frameshift 3 0 high [ChimerSeq,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication PIK3R3 NA LRRC41 NA NA NA NA NA TCGAFusion -PILRB--AKAP9 BS_H4B5Y6S0 0.600000605285944 3.26596172153844 NA NA no change differentially expressed NA NA 7:100354012 7:92031512 ARRIBA other 2 2 high [INTRACHROMOSOMAL[chr7:8.24Mb]],duplication PILRB NA AKAP9 NA NA CosmicCensus, Oncogene NA NA NA -PILRB--AKAP9 BS_H4B5Y6S0 0.600000605285944 3.26596172153844 NA NA no change differentially expressed NA NA 7:100353270 7:92029924 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr7:8.24Mb]],duplication PILRB NA AKAP9 NA NA CosmicCensus, Oncogene NA NA NA -PIMREG--TVP23B BS_4B0BAVTX NA -0.248815380630133 NA NA NA no change NA NA 17:6449733 17:18786010 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr17:12.33Mb]],duplication PIMREG NA TVP23B NA NA NA NA NA NA -PIP5K1B--PIP5K1B BS_WSQMAA33 -0.235036559779444 -0.235036559779444 NA NA no change no change NA NA 9:68940790 9:68923302 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.30Mb]],duplication/non-canonical_splicing PIP5K1B NA PIP5K1B NA NA NA NA NA NA -PIPOX--PIPOX BS_NRPG5K4K 2.5846596474723 2.5846596474723 NA NA differentially expressed differentially expressed NA NA 17:29046847 17:29044859 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.11Mb]],duplication/non-canonical_splicing PIPOX NA PIPOX NA NA NA NA NA NA -PIR--FAM133A BS_NGHK9RZP 1.86696538968843 -2.30467922997042 NA NA no change differentially expressed NA NA X:15455848 X:93679006 ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chrX:78.18Mb]],duplication/5'-5' PIR NA FAM133A NA NA NA NA NA NA -PIR--Z94722.1(20474)/RNU6-332P(205957) BS_NGHK9RZP 1.86696538968843 NA NA NA no change NA NA NA X:15455848 X:93797858 ARRIBA frameshift 2 1 high [],duplication PIR NA Z94722.1 RNU6-332P NA NA NA NA NA -PISD--SLC5A4 BS_MN5XVP5A -0.836180494794165 5.30699658258759 NA NA no change differentially expressed NA NA 22:31648101 22:32239090 ARRIBA in-frame 6 0 high [INTRACHROMOSOMAL[chr22:0.56Mb]],duplication PISD NA SLC5A4 NA NA NA NA NA NA -PITPNB--ANKS6 BS_31TF0P1N -1.78605921325973 0.123765212203141 NA NA no change no change NA NA 22:27873738 9:98756606 ARRIBA in-frame 11 3 high [INTERCHROMOSOMAL[chr22--chr9]],translocation PITPNB NA ANKS6 NA NA NA NA NA NA -PITPNB--ANKS6 BS_31TF0P1N -1.78605921325973 0.123765212203141 NA NA no change no change NA NA 22:27873738 9:98756603 ARRIBA in-frame 7 3 high [INTERCHROMOSOMAL[chr22--chr9]],translocation PITPNB NA ANKS6 NA NA NA NA NA NA -PITPNM3--KIAA0753 BS_09R7GDA7 0.403226528402113 1.66076695891265 NA NA no change no change NA NA 17:6525356 17:6590630 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA -PITPNM3--KIAA0753 BS_9NJHQE9F 0.379173313600365 2.35236257970498 NA NA no change differentially expressed NA NA 17:6525356 17:6590630 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA -PITPNM3--KIAA0753 BS_9NJHQE9F 0.379173313600365 2.35236257970498 NA NA no change differentially expressed NA NA 17:6525356 17:6590578 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA -PITPNM3--KIAA0753 BS_AMQGM1V9 1.14657679942486 1.50033705893801 NA NA no change no change NA NA 17:6525356 17:6600458 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA -PITPNM3--KIAA0753 BS_CREQ97QC 0.81374451863696 1.00571755865118 NA NA no change no change NA NA 17:6525356 17:6590630 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA -PITPNM3--KIAA0753 BS_CVGFNCBJ 0.20488597335115 -0.0197049683386432 NA NA no change no change NA NA 17:6525356 17:6590630 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA -PITPNM3--KIAA0753 BS_HCP5C912 0.605725197639194 0.241840664019429 NA NA no change no change NA NA 17:6525356 17:6600458 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA -PITPNM3--KIAA0753 BS_HCP5C912 0.605725197639194 0.241840664019429 NA NA no change no change NA NA 17:6525356 17:6590630 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA -PITPNM3--KIAA0753 BS_HCP5C912 0.605725197639194 0.241840664019429 NA NA no change no change NA NA 17:6525356 17:6590578 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA -PITPNM3--KIAA0753 BS_SDA4RMMG -0.623599985465587 -0.130187423943403 NA NA no change no change NA NA 17:6525356 17:6590630 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA -PITPNM3--KIAA0753 BS_SDA4RMMG -0.623599985465587 -0.130187423943403 NA NA no change no change NA NA 17:6525356 17:6600458 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA -PITRM1--AC084816.1 BS_A0DYVX9J 6.00196942607235 NA NA NA differentially expressed NA NA NA 10:3138904 12:23113569 ARRIBA frameshift 18 4 high [INTERCHROMOSOMAL[chr10--chr12]],translocation/5'-5' PITRM1 NA AC084816.1 NA NA NA NA NA NA -PITRM1--AC084816.1 BS_A0DYVX9J 6.00196942607235 NA NA NA differentially expressed NA NA NA 10:3138313 12:23124527 ARRIBA other 4 0 low [INTERCHROMOSOMAL[chr10--chr12]],translocation PITRM1 NA AC084816.1 NA NA NA NA NA NA -PITRM1--AC087258.1 BS_A0DYVX9J 6.00196942607235 NA NA NA differentially expressed NA NA NA 10:3138904 12:23113569 ARRIBA frameshift 18 3 high [INTERCHROMOSOMAL[chr10--chr12]],translocation/5'-5' PITRM1 NA AC087258.1 NA NA NA NA NA NA -PITRM1--AC087258.1 BS_A0DYVX9J 6.00196942607235 NA NA NA differentially expressed NA NA NA 10:3138313 12:23124527 ARRIBA other 4 0 low [INTERCHROMOSOMAL[chr10--chr12]],translocation PITRM1 NA AC087258.1 NA NA NA NA NA NA -PKHD1--PKHD1 BS_P0W5VJH4 137.889494169588 137.889494169588 NA NA differentially expressed differentially expressed NA NA 6:51836404 6:51870639 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.47Mb]],duplication/non-canonical_splicing PKHD1 NA PKHD1 NA Oncogene Oncogene NA NA NA -PKN1--ARHGEF1 BS_VPBMDMQX 1.96567244671541 1.08021696507261 NA NA no change no change NA NA 19:14458375 19:41888064 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr19:27.41Mb]],deletion PKN1 NA ARHGEF1 NA Kinase, Kinase NA NA NA NA -PKN2--BLNK BS_S6S7SK3P 3.31942978745409 1.42950815474321 NA NA differentially expressed no change NA NA 1:88684628 10:96204616 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr1--chr10]],translocation PKN2 NA BLNK NA Kinase, Kinase TumorSuppressorGene NA NA NA -PKN2--BLNK BS_S6S7SK3P 3.31942978745409 1.42950815474321 NA NA differentially expressed no change NA NA 1:88684628 10:96201058 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr1--chr10]],translocation PKN2 NA BLNK NA Kinase, Kinase TumorSuppressorGene NA NA NA -PKN2--BLNK BS_S6S7SK3P 3.31942978745409 1.42950815474321 NA NA differentially expressed no change NA NA 1:88684628 10:96200158 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr1--chr10]],translocation PKN2 NA BLNK NA Kinase, Kinase TumorSuppressorGene NA NA NA -PKNOX2--AP003086.2 BS_23M72ABG -0.545762615171177 NA NA NA no change NA NA NA 11:125235115 11:78443648 ARRIBA other 14 0 medium [INTRACHROMOSOMAL[chr11:46.72Mb]],duplication PKNOX2 NA AP003086.2 NA TranscriptionFactor NA NA NA NA -PKNOX2--AP003086.2 BS_D9GEXXHX -0.421837613410326 NA NA NA no change NA NA NA 11:125235115 11:78443648 ARRIBA other 10 0 medium [INTRACHROMOSOMAL[chr11:46.72Mb]],duplication PKNOX2 NA AP003086.2 NA TranscriptionFactor NA NA NA NA -PKNOX2--AP003086.2 BS_KR4MP5ET -0.513014985010388 NA NA NA no change NA NA NA 11:125235115 11:78443648 ARRIBA other 14 0 medium [INTRACHROMOSOMAL[chr11:46.72Mb]],duplication PKNOX2 NA AP003086.2 NA TranscriptionFactor NA NA NA NA -PKP4--RNU6-546P(327301)/LINC01876(353702) BS_1D6PZNKN -1.81202552328897 NA NA NA no change NA NA NA 2:158603104 2:155657828 ARRIBA frameshift 2 1 high [],duplication PKP4 NA RNU6-546P LINC01876 NA NA NA NA NA -PLAA--FRG1HP BS_49FQXT2E 1.52087236540567 NA NA NA no change NA NA NA 9:26946897 9:41056955 ARRIBA frameshift 17 0 high [INTRACHROMOSOMAL[chr9:14.04Mb]],inversion PLAA NA FRG1HP NA NA NA NA NA NA -PLAA--PGM5P2 BS_49FQXT2E 1.52087236540567 0.728125151224033 NA NA no change no change NA NA 9:26946897 9:41056955 ARRIBA frameshift 17 0 high [INTRACHROMOSOMAL[chr9:14.06Mb]],inversion/5'-5' PLAA NA PGM5P2 NA NA NA NA NA NA -PLAGL1--LAMA4 BS_27QE6BV7 1.35308887184032 1.26113310894642 NA NA no change no change NA NA 6:143948342 6:112224342 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr6:31.69Mb]],deletion PLAGL1 NA LAMA4 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA -PLAGL1--PHACTR2 BS_GXTFW99H 3.37332437547215 13.775384614997 NA NA differentially expressed differentially expressed NA NA 6:144008090 6:143712016 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr6:0.11Mb]],inversion PLAGL1 NA PHACTR2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA -PLCE1--C10orf35(13640)/AL450311.1(37660) BS_84XCR9GG 3.49859946837197 -1.41898409825171 NA NA differentially expressed no change NA NA 10:94031317 10:69647239 ARRIBA frameshift 11 0 medium [],inversion PLCE1 NA C10orf35 AL450311.1 TumorSuppressorGene NA NA NA NA -PLCE1--PIPSL(26181)/PLCE1(43091) BS_61E80SD6 2.57843745671245 6.27658559340273 NA 2.57843745671245 differentially expressed differentially expressed NA differentially expressed 10:94171496 10:93987721 ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(34154)/PLCE1(35118) BS_SQX5E15Z 4.74766594394271 5.64043299956541 NA 4.74766594394271 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:93995694 ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(34154)/PLCE1(35118) BS_T1DVKKJB 7.33995118494141 2.89864088018587 NA 7.33995118494141 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:93995694 ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(38084)/PLCE1(31188) BS_7BTZQKYY 5.42457509043084 7.22486786620522 NA 5.42457509043084 differentially expressed differentially expressed NA differentially expressed 10:94171496 10:93999624 ARRIBA frameshift 1 2 medium [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(38084)/PLCE1(31188) BS_7G42J2SK 6.90616847140518 11.4883046883512 NA 6.90616847140518 differentially expressed differentially expressed NA differentially expressed 10:94171496 10:93999624 ARRIBA frameshift 1 6 high [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(38084)/PLCE1(31188) BS_NQB91P48 4.49119241047971 3.76438911541161 NA 4.49119241047971 differentially expressed differentially expressed NA differentially expressed 10:94171496 10:93999624 ARRIBA frameshift 3 1 high [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(38084)/PLCE1(31188) BS_TZ5D0A7R 5.92825228563835 3.9732566730221 NA 5.92825228563835 differentially expressed differentially expressed NA differentially expressed 10:94171496 10:93999624 ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(43910)/PLCE1(25362) BS_23M72ABG 7.12660042928364 3.55257966462404 NA 7.12660042928364 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94005450 ARRIBA frameshift 2 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(43910)/PLCE1(25362) BS_25T139TX 7.28203888459808 2.67418563276307 NA 7.28203888459808 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94005450 ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(43910)/PLCE1(25362) BS_3DCBDJAT 6.95439219818185 5.07288555391086 NA 6.95439219818185 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94005450 ARRIBA frameshift 1 1 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(43910)/PLCE1(25362) BS_74G5K7JF 8.09529454304416 7.87880665064339 NA 8.09529454304416 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94005450 ARRIBA frameshift 5 11 high [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(43910)/PLCE1(25362) BS_7P83Z28P 5.6410753956057 5.54731677388306 NA 5.6410753956057 differentially expressed differentially expressed NA differentially expressed 10:94171496 10:94005450 ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(43910)/PLCE1(25362) BS_CZ3ER8DY 5.75713619505047 9.0332009987533 NA 5.75713619505047 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94005450 ARRIBA frameshift 2 3 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(43910)/PLCE1(25362) BS_KF0ZXDER 7.19639867612492 4.07661256027974 NA 7.19639867612492 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94005450 ARRIBA frameshift 1 1 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(43910)/PLCE1(25362) BS_P7EY9DXG 8.91147838265902 9.25381457483064 NA 8.91147838265902 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94005450 ARRIBA frameshift 2 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(43910)/PLCE1(25362) BS_QW60M0FE 7.1434148743393 7.14108925175116 NA 7.1434148743393 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94005450 ARRIBA frameshift 3 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(43910)/PLCE1(25362) BS_S7CZY2CH 5.85726900005445 5.82495338082956 NA 5.85726900005445 differentially expressed differentially expressed NA differentially expressed 10:94171496 10:94005450 ARRIBA frameshift 2 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(43910)/PLCE1(25362) BS_V89HGTET 4.31132318471027 3.76438911541161 NA 4.31132318471027 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94005450 ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(43910)/PLCE1(25362) BS_WVW3W6ZB 9.15402486412951 7.39103776026252 NA 9.15402486412951 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94005450 ARRIBA frameshift 2 1 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(43910)/PLCE1(25362) BS_X16PENSA 5.19958493499777 3.33774426233977 NA 5.19958493499777 differentially expressed differentially expressed NA differentially expressed 10:94171496 10:94005450 ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(43910)/PLCE1(25362) BS_Z7Y2466H 5.48136392201688 4.78087206020971 NA 5.48136392201688 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94005450 ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(55799)/PLCE1(13473) BS_5PEFNDCY 3.82336271449026 2.67418563276307 NA 3.82336271449026 differentially expressed differentially expressed NA differentially expressed 10:94171496 10:94017339 ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(55799)/PLCE1(13473) BS_8NY9J9NQ 4.58790363781198 4.97617639489402 NA 4.58790363781198 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94017339 ARRIBA frameshift 1 1 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(55799)/PLCE1(13473) BS_A3QZB9Y2 6.61929356438305 10.1740870314455 NA 6.61929356438305 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94017339 ARRIBA frameshift 3 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(55799)/PLCE1(13473) BS_S7CZY2CH 5.85726900005445 5.82495338082956 NA 5.85726900005445 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94017339 ARRIBA frameshift 5 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(55799)/PLCE1(13473) BS_SXCZ3CXN 6.95097493441973 4.17926294110296 NA 6.95097493441973 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94017339 ARRIBA frameshift 2 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(55799)/PLCE1(13473) BS_W4HGV6E7 4.87926458067718 4.8788412822714 NA 4.87926458067718 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94017339 ARRIBA frameshift 2 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(55799)/PLCE1(13473) BS_X2QTK3QD 7.07227228240522 4.38248525538312 NA 7.07227228240522 differentially expressed differentially expressed NA differentially expressed 10:94032252 10:94017339 ARRIBA frameshift 4 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(69143)/PLCE1(129) BS_ABYF92Z9 3.98252658926009 5.91637142770597 NA 3.98252658926009 differentially expressed differentially expressed NA differentially expressed 10:94171496 10:94030683 ARRIBA frameshift 3 0 medium [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(69143)/PLCE1(129) BS_J60G8DMK 6.70175253671849 4.58299785797524 NA 6.70175253671849 differentially expressed differentially expressed NA differentially expressed 10:94171496 10:94030683 ARRIBA frameshift 3 0 medium [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(69143)/PLCE1(129) BS_JFR750KD 4.31787128482829 3.65885729706281 NA 4.31787128482829 differentially expressed differentially expressed NA differentially expressed 10:94171496 10:94030683 ARRIBA frameshift 2 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(69143)/PLCE1(129) BS_KN92S7YQ 1.97604520119882 5.91637142770597 NA 1.97604520119882 no change differentially expressed NA no change 10:94171496 10:94030683 ARRIBA frameshift 2 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCE1--PIPSL(69143)/PLCE1(129) BS_WRQHPSXQ 4.66603109864836 3.33774426233977 NA 4.66603109864836 differentially expressed differentially expressed NA differentially expressed 10:94132459 10:94030683 ARRIBA frameshift 3 0 medium [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA -PLCH1--KCNAB1 BS_7FWZ518S 1.51829918223791 -0.250645624055093 NA NA no change no change NA NA 3:155744840 3:156118211 ARRIBA other 8 0 high [INTRACHROMOSOMAL[chr3:0.29Mb]],inversion PLCH1 NA KCNAB1 NA NA NA NA NA NA -PLCL1--AC016903.2(19833)/PARD3B(18288) BS_3J85TTZM -0.457608782405196 -0.0585149942998221 NA 3.98151020595559 no change no change NA differentially expressed 2:197805339 2:204527505 ARRIBA frameshift 2 0 high [],inversion PLCL1 NA AC016903.2 PARD3B Oncogene NA NA NA NA -PLEKHA5--PLEKHA5 BS_52426AMF 0.435389238337464 0.435389238337464 NA NA no change no change NA NA 12:19354002 12:19269770 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.25Mb]],duplication/non-canonical_splicing PLEKHA5 NA PLEKHA5 NA NA NA NA NA NA -PLEKHA7--PLEKHA7 BS_W18SF91A 1.70608182339593 1.70608182339593 NA NA no change no change NA NA 11:16794488 11:16803295 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.24Mb]],duplication/non-canonical_splicing PLEKHA7 NA PLEKHA7 NA NA NA NA NA NA -PLEKHA8--PLEKHA8 BS_13CGKADW 1.75960951407526 1.75960951407526 NA NA no change no change NA NA 7:30062742 7:30045085 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHA8--PLEKHA8 BS_1G3WYEN3 0.82351606949623 0.82351606949623 NA NA no change no change NA NA 7:30062742 7:30045085 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHA8--PLEKHA8 BS_1T19NFJ8 0.810636972331933 0.810636972331933 NA NA no change no change NA NA 7:30062742 7:30045085 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHA8--PLEKHA8 BS_2ADZNNV4 -0.397064728442509 -0.397064728442509 NA NA no change no change NA NA 7:30062742 7:30045085 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHA8--PLEKHA8 BS_5NWDARXG 1.11028713441949 1.11028713441949 NA NA no change no change NA NA 7:30062742 7:30045085 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHA8--PLEKHA8 BS_5PEFNDCY 1.49951778361798 1.49951778361798 NA NA no change no change NA NA 7:30062742 7:30045085 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHA8--PLEKHA8 BS_7BTZQKYY 0.518368376213763 0.518368376213763 NA NA no change no change NA NA 7:30062742 7:30045085 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHA8--PLEKHA8 BS_90B22NGP 1.36511716114852 1.36511716114852 NA NA no change no change NA NA 7:30062742 7:30045085 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHA8--PLEKHA8 BS_9DFBHHB5 0.804175150092281 0.804175150092281 NA NA no change no change NA NA 7:30062742 7:30045085 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHA8--PLEKHA8 BS_AMQGM1V9 0.861801841317374 0.861801841317374 NA NA no change no change NA NA 7:30062742 7:30045085 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHA8--PLEKHA8 BS_FEPRNEXX 2.13365747733173 2.13365747733173 NA NA differentially expressed differentially expressed NA NA 7:30062742 7:30045085 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHA8--PLEKHA8 BS_MVW01FPB 1.78707246638805 1.78707246638805 NA NA no change no change NA NA 7:30062742 7:30045085 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHA8--PLEKHA8 BS_N6NE6B3W 2.28256743058207 2.28256743058207 NA NA differentially expressed differentially expressed NA NA 7:30062742 7:30045085 ARRIBA in-frame 17 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHA8--PLEKHA8 BS_P78SMRBS 1.21278144695327 1.21278144695327 NA NA no change no change NA NA 7:30062742 7:30045085 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHA8--PLEKHA8 BS_W97QQYKQ 0.496792926558309 0.496792926558309 NA NA no change no change NA NA 7:30062742 7:30045085 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHA8--PLEKHA8 BS_Y7F9E2E9 0.561027048826701 0.561027048826701 NA NA no change no change NA NA 7:30062742 7:30045085 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHA8--PLEKHA8 BS_ZRM0W01M 2.26342040662446 2.26342040662446 NA NA differentially expressed differentially expressed NA NA 7:30062742 7:30045085 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA -PLEKHG4--CNBP BS_K2FHZGTK 3.99336373516699 -0.0733307012554455 NA NA differentially expressed no change NA NA 16:67277594 3:129171771 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr3]],translocation/3'-3' PLEKHG4 NA CNBP NA NA CosmicCensus, Oncogene NA NA NA -PLEKHG6--VWF(27645)/AC005845.1(2620) BS_49FQXT2E 2.82462224016974 -0.0167759739151232 NA NA differentially expressed no change NA NA 12:6318407 12:6152415 ARRIBA other 4 0 medium [],inversion PLEKHG6 NA VWF AC005845.1 NA NA NA NA NA -PLOD2--RALYL BS_1XJ73KBQ 2.09074019324551 -3.29804405857368 NA NA differentially expressed differentially expressed NA NA 3:146100318 8:84672655 ARRIBA frameshift 1 3 medium [INTERCHROMOSOMAL[chr3--chr8]],translocation/5'-5' PLOD2 NA RALYL NA NA NA NA NA NA -PLPP4--PLPP4 BS_BC936YNZ NA NA NA NA NA NA NA NA 10:120521095 10:120503818 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/non-canonical_splicing PLPP4 NA PLPP4 NA NA NA NA NA NA -PLPPR1--SLC24A2 BS_BKQZ550R NA 3.7955698087668 NA NA NA differentially expressed NA NA 9:101185557 9:19622299 ARRIBA in-frame 22 6 high [INTRACHROMOSOMAL[chr9:81.24Mb]],inversion PLPPR1 NA SLC24A2 NA NA NA NA NA NA -PLPPR2--AC006262.1 BS_AZN38B7V NA NA NA NA NA NA NA NA 19:11359956 19:46235904 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr19:34.84Mb]],inversion/3'-3' PLPPR2 NA AC006262.1 NA NA NA NA NA NA -PLPPR2--IGFL1(4661)/AC006262.4(13490) BS_AZN38B7V NA -0.520846717783737 NA -0.29583656105915 NA no change NA no change 19:11359956 19:46235904 ARRIBA frameshift 9 0 high [],inversion PLPPR2 NA IGFL1 AC006262.4 NA NA NA NA NA -PLPPR4(119870)/AL365220.1(34918)--LINC01708 BS_Z85M2R3N NA NA NA NA NA NA NA NA 1:99429460 1:99492969 ARRIBA other 3 0 medium [],duplication PLPPR4 AL365220.1 LINC01708 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_09R7GDA7 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 19 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_0C7VZC0A NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_0X9EGHY2 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_0Y66ZBWE NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_1G3WYEN3 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 27 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_1T19NFJ8 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 28 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_258RRGDM NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 16 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_2A5R9MEJ NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_2AR3AP0N NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_2SFTWNVE NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_37GTVG4N NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_398KYV92 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_39CGACC7 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_3KASVCSQ NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 38 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_3MS8WVNR NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_3MYEMXPQ NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_3P20Q2C3 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 16 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_3T6X4BPC NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_3XY76V8T NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_49852ZBH NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_4C4MZ4NT NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_4PH1MBGR NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_4W1DBAN4 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 24 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_4W68NV3M NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_5PEFNDCY NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_60K3EQ9S NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_61E80SD6 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 14 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_680K119G NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_6MY8W3H0 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 40 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_78QX3XDF NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_7N0B2CY1 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_7XRN3CFX NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_7ZV3DPGT NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_8F9BDWY4 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_8MA5B8Y9 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 12 4 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_8PNA0V6R NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_912NX4Y0 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 19 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_92VDQ0NE NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 32 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_9DFBHHB5 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_9F09XV62 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_9RT63JD9 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_A14Z8BBK NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_AG4H9S3J NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_AJ6X83G5 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_AKRHBPNZ NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_AMQGM1V9 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 46 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_AWH9757B NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_B1HVNV0T NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_BPSTSCBJ NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_C7N3J4NW NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 13 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_CHDGRYHJ NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_CQSAJ7BF NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_CREQ97QC NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 24 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_CVGFNCBJ NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_CW9QV8AG NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_CZ82ANWP NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_DMZP9G1H NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 25 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_DV86M0Y7 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_DVCQ8XDZ NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_ERJAJ0KA NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_ERWT0ZWE NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_FJZPQZ2C NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_FWMJPKCV NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 32 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_H3FE3TH9 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_HCP5C912 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 60 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_HTEPAKCM NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_JH29M4KG NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_JVA2NQFF NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_JXNZYGCR NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_K5802F84 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 24 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_KN92S7YQ NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_KPT2WPHW NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 36 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_KQ6ZW085 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_KVNGNETA NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_KX6J8TRK NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_M1PVEHCM NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_M4NVX721 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_M86ECPHK NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_MF47B9ZW NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_N210XMKR NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_NKRYMHEP NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_NS7GSHB9 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_NT9NZYFD NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 21 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_NYS8TRCB NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_NZ71XCG3 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_P44PE00R NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_P4NX9MPA NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_QAG1RDXN NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_QC3XCE6X NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_QEYPFYHD NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_QF5VVZX5 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_QNAQGAV6 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_QRDT19KS NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_QV51J756 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_QWNBZ9RJ NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_QWTE1CWR NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_R13X6TMW NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_R7HZCZ8B NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_S1M423AB NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_SQX5E15Z NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_TDEFAPNH NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_TG93XC55 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 35 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_TV5B86ZD NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_TYAYZ9ZW NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_V3Z3DB4N NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_VMMJYN8Z NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 23 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_VNE0ZPBS NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 20 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_VPMKHW9X NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 16 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_VTJ9ESSV NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_W6AC5J3C NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_W9AT0MR7 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_W9N9844Q NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_WCRKYV0T NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_X4X1SFSE NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 16 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_XJTW0P8P NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 30 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_YA8RBGD8 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_YB2RXRHT NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_YMAJC22S NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 20 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_Z1A875MW NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_ZH1FBX50 NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 20 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_ZR96A4FH NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 52 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLPPR5--PLPPR5 BS_ZZPBANDD NA NA NA NA NA NA NA NA 1:98953070 1:98956741 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA -PLSCR4--AC025566.1 BS_6JHXXVR7 1.14745125913593 NA NA NA no change NA NA NA 3:146250960 3:148160911 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr3:1.91Mb]],inversion PLSCR4 NA AC025566.1 NA NA NA NA NA NA -PLSCR5(303374)/AC092957.1(95)--AC092957.1 BS_CXVJK2FY 0.162319715539782 NA NA NA no change NA NA NA 3:146909590 3:146926650 ARRIBA other 2 0 low [],duplication PLSCR5 AC092957.1 AC092957.1 NA NA NA NA NA NA -PLXNA1--AC011199.1(4145)/PLXNA1(8023) BS_TZVFR600 1.74542978391162 NA NA 1.74542978391162 no change NA NA no change 3:127014831 3:126980571 ARRIBA frameshift 4 0 high [],duplication PLXNA1 NA AC011199.1 PLXNA1 NA NA NA NA NA -PLXNB2--PPP6R2 BS_SFRQXM76 2.0836235024628 0.489584295391172 NA NA differentially expressed no change NA NA 22:50285800 22:50395329 ARRIBA frameshift 5 0 high [CCLE,INTRACHROMOSOMAL[chr22:0.04Mb],LOCAL_INVERSION:-:+:[35677]],duplication/5'-5' PLXNB2 NA PPP6R2 NA NA NA NA NA NA -PLXND1--NISCH BS_FAQQ0GCQ 0.92577854879888 -0.885617165583798 NA NA no change no change NA NA 3:129557346 3:52474930 ARRIBA other 6 1 medium [INTRACHROMOSOMAL[chr3:77.06Mb]],deletion/5'-5' PLXND1 NA NISCH NA NA NA NA NA NA -PMPCB--CNTNAP2 BS_8NY9J9NQ 0.30568356088251 0.343128903275248 NA NA no change no change NA NA 7:103312131 7:147903565 ARRIBA in-frame 27 7 high [INTRACHROMOSOMAL[chr7:42.79Mb]],deletion PMPCB NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA -PMPCB--SYF2P2(2364)/AL353795.3(24976) BS_4QW2S1Q8 0.403794156618393 -0.44222882529222 NA NA no change no change NA NA 7:103304490 9:35013649 ARRIBA frameshift 12 0 high [],translocation PMPCB NA SYF2P2 AL353795.3 NA NA NA NA NA -PNPLA8--FBXL13 BS_6JHXXVR7 3.09425216906641 6.19545020534913 NA NA differentially expressed differentially expressed NA NA 7:108526029 7:102968117 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:5.40Mb]],deletion PNPLA8 NA FBXL13 NA NA TumorSuppressorGene NA NA NA -PNPLA8--FBXL13 BS_6JHXXVR7 3.09425216906641 6.19545020534913 NA NA differentially expressed differentially expressed NA NA 7:108521476 7:102968117 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:5.40Mb]],deletion PNPLA8 NA FBXL13 NA NA TumorSuppressorGene NA NA NA -PNPLA8--IMMP2L BS_6JHXXVR7 3.09425216906641 5.93475055365765 NA NA differentially expressed differentially expressed NA NA 7:108502491 7:110963565 ARRIBA in-frame 166 17 high [INTRACHROMOSOMAL[chr7:2.09Mb]],duplication PNPLA8 NA IMMP2L NA NA NA NA NA NA -PNPLA8--IMMP2L BS_6JHXXVR7 3.09425216906641 5.93475055365765 NA NA differentially expressed differentially expressed NA NA 7:108514144 7:110963565 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr7:2.09Mb]],duplication PNPLA8 NA IMMP2L NA NA NA NA NA NA -PNPLA8--LRRN3 BS_6JHXXVR7 3.09425216906641 5.93212344996926 NA NA differentially expressed differentially expressed NA NA 7:108502491 7:111111838 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr7:2.52Mb]],duplication/5'-5' PNPLA8 NA LRRN3 NA NA NA NA NA NA -POC1B--POC1B BS_H1XPVS9A 0.177620790383348 0.177620790383348 NA NA no change no change NA NA 12:89451641 12:89424706 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.11Mb]],duplication POC1B NA POC1B NA NA NA NA NA NA -POLN--POLN BS_AMQGM1V9 -0.894361001766398 -0.894361001766398 NA NA no change no change NA NA 4:2123502 4:2174751 ARRIBA frameshift 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr4:0.17Mb]],duplication POLN NA POLN NA NA NA NA NA NA -POLQ--IFT57 BS_S6S7SK3P 3.17568839933342 2.97559147543245 NA NA differentially expressed differentially expressed NA NA 3:121449315 3:108205318 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:13.21Mb]],inversion/5'-5' POLQ NA IFT57 NA CosmicCensus NA NA NA NA -POLR2F--AL049612.1(167779)/AL596442.1(184636) BS_1HQ76V6D -2.77556285705686 NA NA NA differentially expressed NA NA NA 22:37959476 6:169977881 ARRIBA frameshift 3 1 high [],translocation POLR2F NA AL049612.1 AL596442.1 NA NA NA NA NA -POLR2J2--DOCK4 BS_6JHXXVR7 1.79754528436988 0.558604988893902 NA NA no change no change NA NA 7:102639123 7:112004131 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr7:9.05Mb]],duplication POLR2J2 NA DOCK4 NA NA NA NA NA NA -POM121--AC008163.1 BS_WKESC3XN 1.6652169149244 NA NA NA no change NA NA NA 7:72891110 7:81687576 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:8.54Mb]],inversion POM121 NA AC008163.1 NA NA NA NA NA NA -POSTN--CST3 BS_ABYF92Z9 12.3160667891607 0.515693606861293 NA NA differentially expressed no change NA NA 13:37571369 20:23633999 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr13--chr20]],translocation POSTN NA CST3 NA NA NA NA NA NA -POTEKP--MED15P4(16025)/POTEKP(38739) BS_7ZV3DPGT 209.909840843033 -0.0294627825494395 NA 209.909840843033 differentially expressed no change NA differentially expressed 2:131613103 2:131553013 ARRIBA other 2 0 medium [],duplication POTEKP NA MED15P4 POTEKP NA NA NA NA NA -POTEKP--MED15P4(16025)/POTEKP(38739) BS_VA5T4KAA 456.241286025161 30.9683745004851 NA 456.241286025161 differentially expressed differentially expressed NA differentially expressed 2:131613103 2:131553013 ARRIBA other 3 0 medium [],duplication POTEKP NA MED15P4 POTEKP NA NA NA NA NA -POTEKP--MED15P4(38047)/POTEKP(16717) BS_7ZV3DPGT 209.909840843033 -0.0294627825494395 NA 209.909840843033 differentially expressed no change NA differentially expressed 2:131613103 2:131575035 ARRIBA other 2 0 low [],duplication POTEKP NA MED15P4 POTEKP NA NA NA NA NA -POTEKP--MED15P4(38047)/POTEKP(16717) BS_KK5C8VCK 254.597497927361 -0.0294627825494395 NA 254.597497927361 differentially expressed no change NA differentially expressed 2:131613103 2:131575035 ARRIBA other 3 0 medium [],duplication POTEKP NA MED15P4 POTEKP NA NA NA NA NA -POTEKP--MED15P4(38047)/POTEKP(16717) BS_YEB88D32 586.405538398188 59.267182783448 NA 586.405538398188 differentially expressed differentially expressed NA differentially expressed 2:131613103 2:131575035 ARRIBA other 5 0 low [],duplication POTEKP NA MED15P4 POTEKP NA NA NA NA NA -POU2F1--POU2F1 BS_B7QS4DHK 1.46712409815989 1.46712409815989 NA NA no change no change NA NA 1:167413114 1:167411959 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing POU2F1 NA POU2F1 NA TranscriptionFactor TranscriptionFactor NA NA NA -POU6F1--FLJ31104(7645)/AC008892.1(47756) BS_1EBQ3T20 -1.28558058844987 2.11604572122156 NA NA no change differentially expressed NA NA 12:51189751 5:56011294 ARRIBA other 9 0 medium [],translocation POU6F1 NA FLJ31104 AC008892.1 TranscriptionFactor NA NA NA NA -POU6F1--FLJ31104(7645)/AC008892.1(47756) BS_8ZD6J47V -0.568144928206792 0.578138860493795 NA NA no change no change NA NA 12:51189751 5:56011294 ARRIBA other 7 1 medium [],translocation POU6F1 NA FLJ31104 AC008892.1 TranscriptionFactor NA NA NA NA -POU6F1--FLJ31104(7645)/AC008892.1(47756) BS_M8EA6R2A -0.31645575327477 1.66930007554801 NA NA no change no change NA NA 12:51189751 5:56011294 ARRIBA other 11 0 medium [],translocation POU6F1 NA FLJ31104 AC008892.1 TranscriptionFactor NA NA NA NA -POU6F2--POU6F2 BS_AMZ70B6F 10.1224248132471 10.1224248132471 NA NA differentially expressed differentially expressed NA NA 7:39086031 7:38986246 ARRIBA frameshift 19 2 high [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -POU6F2--POU6F2 BS_BPWEFR89 12.6191076539515 12.6191076539515 NA NA differentially expressed differentially expressed NA NA 7:39086031 7:38986246 ARRIBA frameshift 25 2 medium [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -POU6F2--POU6F2 BS_DVCQ8XDZ 3.61897735918897 3.61897735918897 NA NA differentially expressed differentially expressed NA NA 7:39086031 7:38986246 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -POU6F2--POU6F2 BS_KPT2WPHW 2.21311226100979 2.21311226100979 NA NA differentially expressed differentially expressed NA NA 7:39340015 7:39318215 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -POU6F2--POU6F2 BS_KVNGNETA 8.63723707131441 8.63723707131441 NA NA differentially expressed differentially expressed NA NA 7:39086031 7:38986246 ARRIBA frameshift 22 0 high [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -POU6F2--POU6F2 BS_NT9NZYFD 2.60059443962191 2.60059443962191 NA NA differentially expressed differentially expressed NA NA 7:39086031 7:38986246 ARRIBA frameshift 4 1 medium [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -POU6F2--POU6F2 BS_QC3XCE6X 2.15622122175368 2.15622122175368 NA NA differentially expressed differentially expressed NA NA 7:39086031 7:38986246 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -POU6F2--POU6F2 BS_THSPSG2Z 10.4145547684554 10.4145547684554 NA NA differentially expressed differentially expressed NA NA 7:39086031 7:38986246 ARRIBA frameshift 8 1 medium [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -POU6F2--POU6F2 BS_TRKH2SPE 6.82593898589816 6.82593898589816 NA NA differentially expressed differentially expressed NA NA 7:39086031 7:39041842 ARRIBA frameshift 8 0 medium [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -POU6F2--POU6F2 BS_V96WVE3Z 8.91959248165928 8.91959248165928 NA NA differentially expressed differentially expressed NA NA 7:39086031 7:38986246 ARRIBA frameshift 19 3 high [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -POU6F2--POU6F2 BS_WCRKYV0T 3.6850883812966 3.6850883812966 NA NA differentially expressed differentially expressed NA NA 7:39086031 7:38986246 ARRIBA frameshift 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -POU6F2--POU6F2 BS_ZR96A4FH 4.61171467057673 4.61171467057673 NA NA differentially expressed differentially expressed NA NA 7:39340015 7:39318215 ARRIBA frameshift 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -PPA2--TET2 BS_11WY983P 0.298449619832602 7.80385081179977 NA NA no change differentially expressed NA NA 4:105453598 4:105259619 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.09Mb],LOCAL_INVERSION:-:+:[89261]],inversion PPA2 NA TET2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -PPARD--ZNF76 BS_GJNCYABP -0.74647103484554 -0.794594052907151 NA NA no change no change NA NA 6:35347150 6:35286128 ARRIBA in-frame 4 0 high [INTRACHROMOSOMAL[chr6:0.05Mb],LOCAL_REARRANGEMENT:+:[46573]],duplication PPARD NA ZNF76 NA Oncogene, TranscriptionFactor TranscriptionFactor NA NA NA -PPEF1--PPEF1 BS_TG93XC55 1.68453289950993 1.68453289950993 NA NA no change no change NA NA X:18761576 X:18730181 ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing PPEF1 NA PPEF1 NA NA NA NA NA NA -PPEF1--PPEF1 BS_XJTW0P8P 2.67680130174774 2.67680130174774 NA NA differentially expressed differentially expressed NA NA X:18761576 X:18730181 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing PPEF1 NA PPEF1 NA NA NA NA NA NA -PPEF1--PPEF1 BS_YMAJC22S 0.690827092396507 0.690827092396507 NA NA no change no change NA NA X:18789273 X:18749792 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing PPEF1 NA PPEF1 NA NA NA NA NA NA -PPFIA1--ATE1 BS_7BW0YRPY 2.35767883188821 0.787102720755297 NA NA differentially expressed no change NA NA 11:70362488 10:121902620 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr11--chr10]],translocation PPFIA1 NA ATE1 NA NA NA NA NA NA -PPFIA1--PPFIA1 BS_7G42J2SK 2.82002253456804 2.82002253456804 NA NA differentially expressed differentially expressed NA NA 11:70378195 11:70354301 ARRIBA frameshift 12 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr11:0.11Mb]],duplication/non-canonical_splicing PPFIA1 NA PPFIA1 NA NA NA NA NA NA -PPFIA2--PPFIA2 BS_6P50QTPP 0.0284747221519125 0.0284747221519125 NA NA no change no change NA NA 12:81325777 12:81384244 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.50Mb]],duplication/non-canonical_splicing PPFIA2 NA PPFIA2 NA NA NA NA NA NA -PPFIA2--PPFIA2 BS_QNAQGAV6 1.67416250592447 1.67416250592447 NA NA no change no change NA NA 12:81325777 12:81384244 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.50Mb]],duplication/non-canonical_splicing PPFIA2 NA PPFIA2 NA NA NA NA NA NA -PPFIA2--PPFIA2 BS_QSTAVWGE 1.79700780688399 1.79700780688399 NA NA no change no change NA NA 12:81325777 12:81384244 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.50Mb]],duplication/non-canonical_splicing PPFIA2 NA PPFIA2 NA NA NA NA NA NA -PPFIA2--PPFIA2 BS_WCRKYV0T 2.80403014302801 2.80403014302801 NA NA differentially expressed differentially expressed NA NA 12:81325777 12:81384244 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.50Mb]],duplication/non-canonical_splicing PPFIA2 NA PPFIA2 NA NA NA NA NA NA -PPFIA2--PPFIA2 BS_YB2RXRHT 1.93374356096412 1.93374356096412 NA NA no change no change NA NA 12:81325777 12:81384244 ARRIBA frameshift 8 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.50Mb]],duplication/non-canonical_splicing PPFIA2 NA PPFIA2 NA NA NA NA NA NA -PPFIA2--TSPAN19 BS_VNWKNRY4 1.2642581866348 0.248879552748518 NA NA no change no change NA NA 12:81676791 12:85014555 ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr12:3.25Mb]],duplication PPFIA2 NA TSPAN19 NA NA NA NA NA NA -PPFIA2--TSPAN19 BS_VNWKNRY4 1.2642581866348 0.248879552748518 NA NA no change no change NA NA 12:81676791 12:85029791 ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr12:3.25Mb]],duplication PPFIA2 NA TSPAN19 NA NA NA NA NA NA -PPFIA2--TSPAN19 BS_VNWKNRY4 1.2642581866348 0.248879552748518 NA NA no change no change NA NA 12:81597952 12:85029973 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr12:3.25Mb]],duplication PPFIA2 NA TSPAN19 NA NA NA NA NA NA -PPFIA2--TSPAN19 BS_VNWKNRY4 1.2642581866348 0.248879552748518 NA NA no change no change NA NA 12:81676791 12:85029973 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr12:3.25Mb]],duplication PPFIA2 NA TSPAN19 NA NA NA NA NA NA -PPFIA2--TSPAN19 BS_VNWKNRY4 1.2642581866348 0.248879552748518 NA NA no change no change NA NA 12:81676791 12:85017599 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr12:3.25Mb]],duplication PPFIA2 NA TSPAN19 NA NA NA NA NA NA -PPFIA2--TSPAN19 BS_VNWKNRY4 1.2642581866348 0.248879552748518 NA NA no change no change NA NA 12:81753973 12:85029973 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:3.25Mb]],duplication PPFIA2 NA TSPAN19 NA NA NA NA NA NA -PPFIBP1--AC006206.2 BS_49FQXT2E 2.08582937800502 NA NA NA differentially expressed NA NA NA 12:27682703 12:5358270 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr12:22.14Mb]],duplication PPFIBP1 NA AC006206.2 NA CosmicCensus, Oncogene NA NA NA NA -PPHLN1--RPS27AP16(217420)/CDH8(373858) BS_M85CXHDV 0.0104820496168763 NA NA -0.447294995318327 no change NA NA no change 12:42398994 16:61273384 ARRIBA frameshift 2 0 medium [],translocation PPHLN1 NA RPS27AP16 CDH8 NA NA NA NA NA -PPIAL4C(19297)/LINC00869(2573)--AC242843.1 BS_8F9BDWY4 -1.0025564436651 NA 0.338289302112693 NA no change NA no change NA 1:149603761 1:149354096 ARRIBA other 3 0 medium [],duplication PPIAL4C LINC00869 AC242843.1 NA NA NA NA NA NA -PPIE--INPP4B BS_TMTV769C -1.31973172459761 0.778341627831864 NA NA no change no change NA NA 1:39692588 4:142725901 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr1--chr4]],translocation PPIE NA INPP4B NA NA TumorSuppressorGene NA NA NA -PPM1F--TRAV22 BS_ZVZDDW2G 0.378746948811568 15.7393528671078 NA NA no change differentially expressed NA NA 22:21952792 14:22070930 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr22--chr14]],translocation PPM1F NA TRAV22 NA NA NA NA NA NA -PPM1H--PPM1H BS_9DZ253JY -0.269592125925084 -0.269592125925084 NA NA no change no change NA NA 12:62689699 12:62720289 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.29Mb]],duplication/non-canonical_splicing PPM1H NA PPM1H NA NA NA NA NA NA -PPM1H--PPM1H BS_HCP5C912 0.592776930869387 0.592776930869387 NA NA no change no change NA NA 12:62689699 12:62720289 ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.29Mb]],duplication/non-canonical_splicing PPM1H NA PPM1H NA NA NA NA NA NA -PPM1H--PPM1H BS_KVNGNETA -0.189919287696484 -0.189919287696484 NA NA no change no change NA NA 12:62689699 12:62720289 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.29Mb]],duplication/non-canonical_splicing PPM1H NA PPM1H NA NA NA NA NA NA -PPME1--CADM1 BS_KBT7MQ6H -0.872824220022731 0.764847148931186 NA NA no change no change NA NA 11:74204445 11:115240420 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:40.91Mb]],inversion PPME1 NA CADM1 NA NA TumorSuppressorGene NA NA NA -PPP1CB--AGAP1 BS_RRAEQZ97 2.11708756572095 1.9669192374732 NA NA differentially expressed no change NA NA 2:28799281 2:235869789 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr2:206.69Mb]],inversion/3'-3' PPP1CB NA AGAP1 NA NA NA NA NA NA -PPP1CB--ALK BS_PQ6QEVE8 2.44874556428233 9.94101182353293 NA NA differentially expressed differentially expressed NA NA 2:28788728 2:29223634 ARRIBA in-frame 138 12 high [INTRACHROMOSOMAL[chr2:0.39Mb]],inversion PPP1CB NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -PPP1CB--ALK BS_PQ6QEVE8 2.44874556428233 9.94101182353293 NA NA differentially expressed differentially expressed NA NA 2:28783978 2:29223528 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr2:0.39Mb]],inversion PPP1CB NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -PPP1CB--ALK BS_ZZWMD6FA 2.92816423753225 7.31193792330893 NA NA differentially expressed differentially expressed NA NA 2:28788728 2:29223634 ARRIBA in-frame 117 18 high [INTRACHROMOSOMAL[chr2:0.39Mb]],inversion PPP1CB NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -PPP1R12B--TM4SF5 BS_6VPKXXMR 0.1484293799689 50.0300633570486 NA NA no change differentially expressed NA NA 1:202349142 17:4780789 ARRIBA in-frame 11 2 high [INTERCHROMOSOMAL[chr1--chr17]],translocation PPP1R12B NA TM4SF5 NA NA NA NA NA NA -PPP1R12B--TM4SF5 BS_M85CXHDV 0.729096595523394 31.3402754408748 NA NA no change differentially expressed NA NA 1:202349142 17:4780789 ARRIBA in-frame 7 0 high [INTERCHROMOSOMAL[chr1--chr17]],translocation PPP1R12B NA TM4SF5 NA NA NA NA NA NA -PPP1R9A--NXPH1(132854)/AC009500.1(52970) BS_593HEWBF 1.30674583482081 0.668769039780654 NA NA no change no change NA NA 7:95120832 7:8885817 ARRIBA frameshift 3 0 high [],duplication PPP1R9A NA NXPH1 AC009500.1 NA NA NA NA NA -PPP2R2D--TCERG1L(139626)/LINC01164(321051) BS_J6VKB1VE 0.831772315150937 -1.10225311864651 NA -0.542736796610694 no change no change NA no change 10:131945459 10:131451347 ARRIBA frameshift 8 2 high [],duplication PPP2R2D NA TCERG1L LINC01164 NA NA NA NA NA -PPP2R5C--NDUFA3 BS_9DZ253JY -3.48172422149746 -1.1046839701367 NA NA differentially expressed no change NA NA 14:101877727 19:54103116 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr14--chr19]],translocation PPP2R5C NA NDUFA3 NA TumorSuppressorGene NA NA NA NA -PPP2R5E--AL161751.1(73431)/AL357094.1(219894) BS_EJ9JKM1C 2.65582781273133 NA NA NA differentially expressed NA NA NA 14:63539529 14:38385361 ARRIBA frameshift 2 0 medium [],inversion PPP2R5E NA AL161751.1 AL357094.1 NA NA NA NA NA -PPP3CB--UPF2 BS_JSPR854S -1.53097294211019 -0.730365890512233 NA NA no change no change NA NA 10:73443906 10:11999631 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:61.39Mb]],inversion/5'-5' PPP3CB NA UPF2 NA NA NA NA NA NA -PPP3R1--AC073050.1 BS_RRAEQZ97 -0.785203133700242 NA NA NA no change NA NA NA 2:68252125 2:167490177 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:99.04Mb]],inversion PPP3R1 NA AC073050.1 NA NA NA NA NA NA -PPP4R3B--ZIC5 BS_70FFPA51 NA 0.737942615445401 NA NA NA no change NA NA 2:55617144 13:99965819 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr2--chr13]],translocation PPP4R3B NA ZIC5 NA NA TranscriptionFactor NA NA NA -PPP6R1--ANKH BS_6JHXXVR7 2.56261724766941 2.65268957226184 NA NA differentially expressed differentially expressed NA NA 19:55236782 5:14860172 ARRIBA frameshift 1 5 medium [INTERCHROMOSOMAL[chr19--chr5]],translocation PPP6R1 NA ANKH NA NA NA NA NA NA -PPP6R1--DRICH1 BS_1HQ76V6D -0.578381842717356 -0.408580990740066 NA NA no change no change NA NA 19:55233812 22:23617362 ARRIBA other 4 4 medium [INTERCHROMOSOMAL[chr19--chr22]],translocation/5'-5' PPP6R1 NA DRICH1 NA NA NA NA NA NA -PPP6R3--CABIN1 BS_DHA5FMVW 1.59996951257891 0.103728259833468 NA NA no change no change NA NA 11:68519651 22:24164400 ARRIBA other 32 1 high [INTERCHROMOSOMAL[chr11--chr22]],translocation PPP6R3 NA CABIN1 NA NA NA NA NA NA -PPP6R3--CABIN1 BS_DHA5FMVW 1.59996951257891 0.103728259833468 NA NA no change no change NA NA 11:68522689 22:24164400 ARRIBA other 2 1 high [INTERCHROMOSOMAL[chr11--chr22]],translocation PPP6R3 NA CABIN1 NA NA NA NA NA NA -PPP6R3--CABIN1 BS_DHA5FMVW 1.59996951257891 0.103728259833468 NA NA no change no change NA NA 11:68519651 22:24160330 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr11--chr22]],translocation PPP6R3 NA CABIN1 NA NA NA NA NA NA -PPP6R3--CABIN1 BS_DHA5FMVW 1.59996951257891 0.103728259833468 NA NA no change no change NA NA 11:68460827 22:24164400 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr11--chr22]],translocation PPP6R3 NA CABIN1 NA NA NA NA NA NA -PQLC2--LINC02556(423)/CES5AP1(30687) BS_PGHK1JRW 0.323246026917883 NA NA -1.1657659626391 no change NA NA no change 1:19327788 22:23328916 ARRIBA other 7 0 medium [],translocation PQLC2 NA LINC02556 CES5AP1 NA NA NA NA NA -PRDM16--SPAG16 BS_8Q77HZ4R 5.01621559200872 0.968073809533154 NA NA differentially expressed no change NA NA 1:3176697 2:213607423 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr1--chr2]],translocation PRDM16 NA SPAG16 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -PRDM2--PRDM2 BS_398KYV92 0.520561822537701 0.520561822537701 NA NA no change no change NA NA 1:13782831 1:13769039 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -PRDM2--PRDM2 BS_4W1DBAN4 0.7768161197343 0.7768161197343 NA NA no change no change NA NA 1:13782831 1:13769039 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -PRDM2--PRDM2 BS_M4NVX721 0.307787780723811 0.307787780723811 NA NA no change no change NA NA 1:13782831 1:13769039 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -PRDM2--PRDM2 BS_QC3XCE6X 0.910201702929508 0.910201702929508 NA NA no change no change NA NA 1:13782831 1:13769039 ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -PRDM2--PRDM2 BS_QNAQGAV6 0.137027464268641 0.137027464268641 NA NA no change no change NA NA 1:13782831 1:13769039 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -PRELID2--GRXCR2 BS_7C40TRCY 11.8548967327529 124.549434630732 NA NA differentially expressed differentially expressed NA NA 5:145703975 5:145935763 ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr5:0.02Mb],LOCAL_REARRANGEMENT:-:[23152]],duplication PRELID2 NA GRXCR2 NA NA NA NA NA NA -PRELID2--GRXCR2 BS_7C40TRCY 11.8548967327529 124.549434630732 NA NA differentially expressed differentially expressed NA NA 5:145796442 5:145935763 ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr5:0.02Mb],LOCAL_REARRANGEMENT:-:[23152]],duplication PRELID2 NA GRXCR2 NA NA NA NA NA NA -PRELID2--GRXCR2 BS_7XQRH69M 13.184904252928 114.976909335522 NA NA differentially expressed differentially expressed NA NA 5:145796442 5:145935763 ARRIBA frameshift 1 1 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr5:0.02Mb],LOCAL_REARRANGEMENT:-:[23152]],duplication PRELID2 NA GRXCR2 NA NA NA NA NA NA -PREPL--AC007100.1(174981)/AC007381.1(75414) BS_RRAEQZ97 -0.787508370299251 NA NA NA no change NA NA NA 2:44343788 2:60275181 ARRIBA frameshift 5 1 medium [],inversion PREPL NA AC007100.1 AC007381.1 NA NA NA NA NA -PREX1--SCD5 BS_FYRDYBMZ 0.420107351516492 2.79518063328022 NA NA no change differentially expressed NA NA 20:48681235 4:82680912 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr20--chr4]],translocation PREX1 NA SCD5 NA Oncogene NA NA NA NA -PREX2--PREX2 BS_7G42J2SK 3.73251882529008 3.73251882529008 NA NA differentially expressed differentially expressed NA NA 8:68090715 8:68069033 ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.28Mb]],duplication/non-canonical_splicing PREX2 NA PREX2 NA CosmicCensus CosmicCensus NA NA NA -PREX2--PREX2 BS_CXVJK2FY 4.14921792207501 4.14921792207501 NA NA differentially expressed differentially expressed NA NA 8:68121049 8:68115753 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.28Mb]],duplication/non-canonical_splicing PREX2 NA PREX2 NA CosmicCensus CosmicCensus NA NA NA -PREX2--PREX2 BS_W80TJC27 3.44106652906838 3.44106652906838 NA NA differentially expressed differentially expressed NA NA 8:68099843 8:68093605 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.28Mb]],duplication/non-canonical_splicing PREX2 NA PREX2 NA CosmicCensus CosmicCensus NA NA NA -PRICKLE2--ADAMTS9 BS_49FQXT2E 3.02084987860567 1.20736200721654 NA NA differentially expressed no change NA NA 3:64444483 3:64686968 ARRIBA frameshift 3 0 high [FA_CancerSupp,INTRACHROMOSOMAL[chr3:0.07Mb],LOCAL_REARRANGEMENT:-:[70178]],duplication PRICKLE2 NA ADAMTS9 NA NA TumorSuppressorGene NA NA TCGAFusion -PRICKLE2--AL671862.1(134986)/AC092265.1(76972) BS_YB07VF1X 1.36436525357942 NA NA NA no change NA NA NA 3:64146830 1:29631879 ARRIBA frameshift 2 0 medium [],translocation PRICKLE2 NA AL671862.1 AC092265.1 NA NA NA NA NA -PRIMPOL--PALLD BS_S6S7SK3P 0.0928175072750739 2.32444686880519 NA NA no change differentially expressed NA NA 4:184666064 4:168511423 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr4:15.72Mb]],duplication PRIMPOL NA PALLD NA NA NA NA NA NA -PRIMPOL--PALLD BS_S6S7SK3P 0.0928175072750739 2.32444686880519 NA NA no change differentially expressed NA NA 4:184661903 4:168511423 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:15.72Mb]],duplication PRIMPOL NA PALLD NA NA NA NA NA NA -PRKAA1--NUSAP1 BS_5CTVXVRX 1.874178540739 13.6377415331856 NA NA no change differentially expressed NA NA 5:40798063 15:41342386 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr5--chr15]],translocation PRKAA1 NA NUSAP1 NA TumorSuppressorGene, Kinase NA NA NA NA -PRKAA1--OIP5 BS_5CTVXVRX 1.874178540739 12.1483056720565 NA NA no change differentially expressed NA NA 5:40798063 15:41332156 ARRIBA frameshift 8 2 high [INTERCHROMOSOMAL[chr5--chr15]],translocation/5'-5' PRKAA1 NA OIP5 NA TumorSuppressorGene, Kinase NA NA NA NA -PRKAA1--OIP5 BS_8ZS9F31R 2.00589339257116 13.9501453664601 NA NA differentially expressed differentially expressed NA NA 5:40798063 15:41332156 ARRIBA frameshift 8 2 high [INTERCHROMOSOMAL[chr5--chr15]],translocation/5'-5' PRKAA1 NA OIP5 NA TumorSuppressorGene, Kinase NA NA NA NA -PRKAR1A--PRKCA BS_RWJZFTP9 1.8749207474269 2.91990053742385 NA NA no change differentially expressed NA NA 17:68525912 17:66732688 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr17:1.70Mb]],duplication PRKAR1A NA PRKCA NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase NA NA NA -PRKAR1B--TNS3 BS_593HEWBF -1.41403290904648 2.10419035236569 NA NA no change differentially expressed NA NA 7:711329 7:47369621 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:46.55Mb]],duplication PRKAR1B NA TNS3 NA NA NA NA NA NA -PRKAR2A--PRKAR2A BS_6T4JGBGY 3.81462239418185 3.81462239418185 NA NA differentially expressed differentially expressed NA NA 3:48765004 3:48807684 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.10Mb]],duplication/non-canonical_splicing PRKAR2A NA PRKAR2A NA NA NA NA NA NA -PRKAR2A--ULK4 BS_7FWZ518S 4.11431765575204 2.68108284582589 NA NA differentially expressed differentially expressed NA NA 3:48847335 3:41398264 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr3:6.78Mb]],deletion PRKAR2A NA ULK4 NA NA Kinase, Kinase NA NA NA -PRKCA--SLC44A1 BS_KVAJYZ6F 3.95127317556802 1.06824580077447 NA NA differentially expressed no change NA NA 17:66689047 9:105438281 ARRIBA in-frame 33 5 high [INTERCHROMOSOMAL[chr17--chr9]],translocation PRKCA NA SLC44A1 NA Kinase NA NA NA NA -PRKCA--SLC44A1 BS_KVAJYZ6F 3.95127317556802 1.06824580077447 NA NA differentially expressed no change NA NA 17:66688436 9:105438281 ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr17--chr9]],translocation PRKCA NA SLC44A1 NA Kinase NA NA NA NA -PRKCB--NRCAM BS_QB7YGKN1 1.70259487776353 3.02162816514391 NA NA no change differentially expressed NA NA 16:24123981 7:108160492 ARRIBA frameshift 161 37 high [INTERCHROMOSOMAL[chr16--chr7]],translocation PRKCB NA NRCAM NA TumorSuppressorGene, CosmicCensus, Kinase TumorSuppressorGene, Oncogene NA NA NA -PRKCB--NRCAM BS_QB7YGKN1 1.70259487776353 3.02162816514391 NA NA no change differentially expressed NA NA 16:24094297 7:108150147 ARRIBA in-frame 11 2 medium [INTERCHROMOSOMAL[chr16--chr7]],translocation PRKCB NA NRCAM NA TumorSuppressorGene, CosmicCensus, Kinase TumorSuppressorGene, Oncogene NA NA NA -PRKCB--NRCAM BS_QB7YGKN1 1.70259487776353 3.02162816514391 NA NA no change differentially expressed NA NA 16:24113069 7:108184614 ARRIBA frameshift 3 2 medium [INTERCHROMOSOMAL[chr16--chr7]],translocation PRKCB NA NRCAM NA TumorSuppressorGene, CosmicCensus, Kinase TumorSuppressorGene, Oncogene NA NA NA -PRKCB--NRCAM BS_QB7YGKN1 1.70259487776353 3.02162816514391 NA NA no change differentially expressed NA NA 16:24113069 7:108160492 ARRIBA frameshift 1 2 medium [INTERCHROMOSOMAL[chr16--chr7]],translocation PRKCB NA NRCAM NA TumorSuppressorGene, CosmicCensus, Kinase TumorSuppressorGene, Oncogene NA NA NA -PRKCE--AC073111.4 BS_7GJT4A6A 1.48597768164777 NA NA NA no change NA NA NA 2:45843063 7:150410160 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr2--chr7]],translocation PRKCE NA AC073111.4 NA TumorSuppressorGene, Kinase NA NA NA NA -PRKCE--AC073111.5 BS_7GJT4A6A 1.48597768164777 NA NA NA no change NA NA NA 2:45843063 7:150410160 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr2--chr7]],translocation PRKCE NA AC073111.5 NA TumorSuppressorGene, Kinase NA NA NA NA -PRKCE--LINC01121 BS_RHD7XPNP 0.794432253606178 -0.290804430000356 NA NA no change no change NA NA 2:45652448 2:45193824 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/5'-5' PRKCE NA LINC01121 NA TumorSuppressorGene, Kinase NA NA NA NA -PRKCE--PRAG1 BS_E3BAT4C1 -0.512818883276359 NA NA NA no change NA NA NA 2:45652448 8:8381834 ARRIBA frameshift 8 0 high [INTERCHROMOSOMAL[chr2--chr8]],translocation PRKCE NA PRAG1 NA TumorSuppressorGene, Kinase Kinase NA NA NA -PRKD1--AL133372.2 BS_7BTZQKYY 2.76916539053175 NA NA NA differentially expressed NA NA NA 14:30191299 14:30205740 ARRIBA other 13 1 medium [INTRACHROMOSOMAL[chr14:0.24Mb]],duplication PRKD1 NA AL133372.2 NA Oncogene, Kinase NA NA NA NA -PRKD1--AL133372.2 BS_7BTZQKYY 2.76916539053175 NA NA NA differentially expressed NA NA NA 14:30047710 14:30205740 ARRIBA frameshift 3 3 medium [INTRACHROMOSOMAL[chr14:0.24Mb]],duplication PRKD1 NA AL133372.2 NA Oncogene, Kinase NA NA NA NA -PRKDC--DEFA1(1835)/DEFT1P(5263) BS_R439VVPK 1.99004825215972 -0.453327460121488 NA -0.101877109100804 no change no change NA no change 8:47913901 8:6981915 ARRIBA frameshift 17 0 medium [],deletion PRKDC NA DEFA1 DEFT1P Kinase NA NA NA NA -PRKN--AL354868.1(710)/RNU6ATAC21P(6964) BS_BWBDH9GM NA NA NA NA NA NA NA NA 6:161785772 6:10215072 ARRIBA frameshift 2 1 high [],inversion PRKN NA AL354868.1 RNU6ATAC21P NA NA NA NA NA -PRKRIP1--KCNIP4 BS_RCCN63K6 -0.498551739507731 -1.54470157114034 NA NA no change no change NA NA 7:102399648 4:21500942 ARRIBA frameshift 7 1 high [INTERCHROMOSOMAL[chr7--chr4]],translocation PRKRIP1 NA KCNIP4 NA NA NA NA NA NA -PRMT8--AC005842.1(87243)/AC007207.2(23396) BS_81SP2HX4 0.773974865726146 NA NA NA no change NA NA NA 12:3553714 12:3997581 ARRIBA frameshift 3 1 medium [],inversion PRMT8 NA AC005842.1 AC007207.2 NA NA NA NA NA -PRMT8--AC007207.1(94884)/CCND2-AS1(35749) BS_81SP2HX4 0.773974865726146 NA NA 1.40359860436119 no change NA NA no change 12:3553714 12:4213016 ARRIBA frameshift 11 1 high [],deletion PRMT8 NA AC007207.1 CCND2-AS1 NA NA NA Oncogene NA -PRMT8--AC007207.2(26808)/HSPA8P5(43985) BS_81SP2HX4 0.773974865726146 NA NA 13.2981846871522 no change NA NA differentially expressed 12:3553714 12:4053466 ARRIBA frameshift 8 1 medium [],inversion PRMT8 NA AC007207.2 HSPA8P5 NA NA NA NA NA -PRMT8--CCND2 BS_81SP2HX4 0.773974865726146 8.10696527319421 NA NA no change differentially expressed NA NA 12:3553714 12:4274001 ARRIBA frameshift 8 1 medium [INTRACHROMOSOMAL[chr12:0.68Mb]],deletion PRMT8 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA -PRMT8--HSPA8P5 BS_81SP2HX4 0.773974865726146 13.2981846871522 NA NA no change differentially expressed NA NA 12:3562678 12:4097497 ARRIBA other 186 11 high [INTRACHROMOSOMAL[chr12:0.50Mb]],inversion/3'-3' PRMT8 NA HSPA8P5 NA NA NA NA NA NA -PRMT8--PRMT8 BS_ZR96A4FH -0.571366839515066 -0.571366839515066 NA NA no change no change NA NA 12:3583208 12:3568706 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.21Mb]],duplication/non-canonical_splicing PRMT8 NA PRMT8 NA NA NA NA NA NA -PROB1--MTNR1B(49686)/AP002371.1(17643) BS_7G42J2SK 2.17265510559032 -0.327477687061893 NA NA differentially expressed no change NA NA 5:139393371 11:93034752 ARRIBA other 1 2 medium [],translocation PROB1 NA MTNR1B AP002371.1 NA NA NA NA NA -PROM1--PROM1 BS_5YJEPPTP 2.65249166307368 2.65249166307368 NA NA differentially expressed differentially expressed NA NA 4:16018323 4:16033509 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing PROM1 NA PROM1 NA NA NA NA NA NA -PROM1--PROM1(70059)/TAPT1(6068) BS_8PNA0V6R 1.6183291618531 1.6183291618531 NA 1.957591138982 no change no change NA no change 4:16075687 4:16154437 ARRIBA frameshift 2 0 medium [],duplication PROM1 NA PROM1 TAPT1 NA NA NA NA NA -PRPH--TUBA1C(9520)/AC125611.4(8508) BS_R634WKN7 3.19790864200956 3.98898268200646 NA NA differentially expressed differentially expressed NA NA 12:49297577 12:49284123 ARRIBA frameshift 6 0 high [],duplication PRPH NA TUBA1C AC125611.4 NA NA NA NA NA -PRR14L--LINC01640(4958)/Z82198.3(15888) BS_1HQ76V6D 2.5858234208344 NA NA NA differentially expressed NA NA NA 22:31716036 22:33121252 ARRIBA frameshift 5 1 medium [],inversion PRR14L NA LINC01640 Z82198.3 NA NA NA NA NA -PRR5--CFAP73 BS_SKGJ5SY9 -0.759104730913184 NA NA NA no change NA NA NA 22:44699827 12:113154420 ARRIBA other 3 0 low [INTERCHROMOSOMAL[chr22--chr12]],translocation PRR5 NA CFAP73 NA TumorSuppressorGene NA NA NA NA -PRR5--MICAL3 BS_ZVZDDW2G 1.63297109788437 -0.870191812703258 NA NA no change no change NA NA 22:44733226 22:17947402 ARRIBA other 9 4 medium [INTRACHROMOSOMAL[chr22:26.64Mb]],duplication/5'-5' PRR5 NA MICAL3 NA TumorSuppressorGene NA NA NA NA -PRR5-ARHGAP8--MICAL3 BS_ZVZDDW2G 4.67395830138347 -0.870191812703258 NA NA differentially expressed no change NA NA 22:44733226 22:17947402 ARRIBA other 9 4 medium [INTRACHROMOSOMAL[chr22:26.68Mb]],duplication/5'-5' PRR5-ARHGAP8 NA MICAL3 NA NA NA NA NA NA -PRRC2B--GFI1B BS_YEB88D32 1.94315181960152 63.7557023583482 NA NA no change differentially expressed NA NA 9:131394263 9:132986659 ARRIBA other 32 3 high [INTRACHROMOSOMAL[chr9:1.44Mb]],deletion PRRC2B NA GFI1B NA NA Oncogene, TranscriptionFactor NA NA NA -PRRC2C--RGL1 BS_HE57E1RP 0.939833943949348 -1.44049690933273 NA NA no change no change NA NA 1:171485735 1:183806375 ARRIBA other 7 2 high [INTRACHROMOSOMAL[chr1:12.04Mb]],deletion PRRC2C NA RGL1 NA NA Oncogene NA NA NA -PRRC2C--RGL1 BS_HE57E1RP 0.939833943949348 -1.44049690933273 NA NA no change no change NA NA 1:171485735 1:183847566 ARRIBA other 7 1 high [INTRACHROMOSOMAL[chr1:12.04Mb]],deletion PRRC2C NA RGL1 NA NA Oncogene NA NA NA -PRRT3-AS1--CRELD1 BS_1EBQ3T20 -0.786447023904546 -2.24053623213839 NA NA no change differentially expressed NA NA 3:9948469 3:9934420 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:+:[1991]],duplication PRRT3-AS1 NA CRELD1 NA NA NA NA NA NA -PRSS23--AP003059.2(23631)/PRSS23(2163) BS_AKRHBPNZ 1.56330530588343 NA NA 1.56330530588343 no change NA NA no change 11:86823593 11:86788896 ARRIBA frameshift 3 0 medium [],duplication PRSS23 NA AP003059.2 PRSS23 NA NA NA NA NA -PRSS23--AP003059.2(23631)/PRSS23(2163) BS_Z6BWR941 4.14701370489958 NA NA 4.14701370489958 differentially expressed NA NA differentially expressed 11:86823593 11:86788896 ARRIBA frameshift 3 0 medium [],duplication PRSS23 NA AP003059.2 PRSS23 NA NA NA NA NA -PRSS51--AC104964.2 BS_13CGKADW -0.692469534659029 NA NA NA no change NA NA NA 8:10489818 8:10435170 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_INVERSION:-:+:[44566]],duplication/3'-3' PRSS51 NA AC104964.2 NA NA NA NA NA NA -PSAP--RGMA BS_WG203ECV 1.41788120801224 2.51832484174345 NA NA no change differentially expressed NA NA 10:71819712 15:93052506 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr10--chr15]],translocation PSAP NA RGMA NA Oncogene NA NA NA NA -PSAT1--LINC01255 BS_MV6ASWV9 0.971946935115089 -0.111003607206135 NA NA no change no change NA NA 9:78297270 18:11495640 ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr9--chr18]],translocation/5'-5' PSAT1 NA LINC01255 NA NA NA NA NA NA -PSENEN--AC011474.1 BS_QWTE1CWR 0.720065202172203 NA NA NA no change NA NA NA 19:35745991 19:29379279 ARRIBA frameshift 6 2 medium [INTRACHROMOSOMAL[chr19:6.22Mb]],duplication/5'-5' PSENEN NA AC011474.1 NA NA NA NA NA NA -PSIP1--FREM1 BS_H1ZS5FMZ 2.06032527307444 2.14207317479441 NA NA differentially expressed differentially expressed NA NA 9:15510117 9:14776256 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.55Mb]],deletion PSIP1 NA FREM1 NA CosmicCensus, Oncogene NA NA NA NA -PSIP1--FREM1 BS_H1ZS5FMZ 2.06032527307444 2.14207317479441 NA NA differentially expressed differentially expressed NA NA 9:15510117 9:14776203 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.55Mb]],deletion PSIP1 NA FREM1 NA CosmicCensus, Oncogene NA NA NA NA -PSIP1--FREM1 BS_H1ZS5FMZ 2.06032527307444 2.14207317479441 NA NA differentially expressed differentially expressed NA NA 9:15510817 9:14776203 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr9:0.55Mb]],deletion PSIP1 NA FREM1 NA CosmicCensus, Oncogene NA NA NA NA -PSIP1--KIF21A BS_VJ2S5DVS -0.347960935379651 -1.58729756116538 NA NA no change no change NA NA 9:15468858 12:39306863 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr9--chr12]],translocation/3'-3' PSIP1 NA KIF21A NA CosmicCensus, Oncogene NA NA NA NA -PSMA2--ABCB1 BS_K17VQECG 0.387271193132519 1.44406873936898 NA NA no change no change NA NA 7:42932118 7:87566976 ARRIBA in-frame 9 0 medium [INTRACHROMOSOMAL[chr7:44.57Mb]],duplication PSMA2 NA ABCB1 NA NA Oncogene NA NA NA -PSMA2--ABCB1 BS_K17VQECG 0.387271193132519 1.44406873936898 NA NA no change no change NA NA 7:42932118 7:87566241 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:44.57Mb]],duplication PSMA2 NA ABCB1 NA NA Oncogene NA NA NA -PSMA2--INHBA-AS1 BS_K17VQECG 0.387271193132519 0.593487132921799 NA NA no change no change NA NA 7:42932118 7:41776841 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:1.14Mb]],inversion PSMA2 NA INHBA-AS1 NA NA NA NA NA NA -PSMB2--PATJ BS_RCCN63K6 -0.191721888574716 NA NA NA no change NA NA NA 1:35605233 1:62079450 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:26.10Mb]],inversion PSMB2 NA PATJ NA NA Oncogene NA NA NA -PSMC2--RELN BS_49FQXT2E 1.36094695509572 -0.744386671869698 NA NA no change no change NA NA 7:103364307 7:103523531 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr7:0.10Mb]],inversion PSMC2 NA RELN NA NA NA NA NA NA -PSMC2--RELN BS_996ZS2A4 1.76928982379169 -1.33225387726612 NA NA no change no change NA NA 7:103355793 7:103776627 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:0.10Mb]],inversion PSMC2 NA RELN NA NA NA NA NA NA -PSME4--DIS3L2 BS_RRAEQZ97 -0.210626776349333 0.597651537706871 NA NA no change no change NA NA 2:53970543 2:232210326 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr2:177.99Mb]],inversion PSME4 NA DIS3L2 NA NA NA NA NA NA -PSPC1--PSPC1 BS_SDA4RMMG 0.136183425836389 0.136183425836389 NA NA no change no change NA NA 13:19705662 13:19709599 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.11Mb]],duplication/non-canonical_splicing PSPC1 NA PSPC1 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_044XZ8ST 0.545142666200986 -0.216408152794233 NA NA no change no change NA NA 13:19726605 13:19835689 ARRIBA frameshift 1 2 high [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_044XZ8ST 0.545142666200986 -0.216408152794233 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_1NPD7PVG 0.372273271448592 -1.09523110069268 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 2 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_1NPD7PVG 0.372273271448592 -1.09523110069268 NA NA no change no change NA NA 13:19730239 13:19835689 ARRIBA in-frame 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_1QNTEZPS 0.971360147909871 0.817187466226612 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 3 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_1QNTEZPS 0.971360147909871 0.817187466226612 NA NA no change no change NA NA 13:19730239 13:19835689 ARRIBA in-frame 2 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_1QNTEZPS 0.971360147909871 0.817187466226612 NA NA no change no change NA NA 13:19759323 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_2SFTWNVE 0.978546885769747 1.51787363801981 NA NA no change no change NA NA 13:19709542 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_2SFTWNVE 0.978546885769747 1.51787363801981 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_37GTVG4N 2.32907824447566 0.451732675895837 NA NA differentially expressed no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 4 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_37GTVG4N 2.32907824447566 0.451732675895837 NA NA differentially expressed no change NA NA 13:19751271 13:19835689 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_37GTVG4N 2.32907824447566 0.451732675895837 NA NA differentially expressed no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_39CGACC7 -0.204326638784433 -0.017847858449572 NA NA no change no change NA NA 13:19709542 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_39CGACC7 -0.204326638784433 -0.017847858449572 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_3TQSE8HF 0.431810010104776 -0.522061808342562 NA NA no change no change NA NA 13:19730239 13:19851448 ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_3TQSE8HF 0.431810010104776 -0.522061808342562 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_3TQSE8HF 0.431810010104776 -0.522061808342562 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_49852ZBH 0.178358005460065 0.774695562956657 NA NA no change no change NA NA 13:19759323 13:19838985 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_49852ZBH 0.178358005460065 0.774695562956657 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_4A45GGSW 0.37015378658758 0.801328355365457 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_4A45GGSW 0.37015378658758 0.801328355365457 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_4PH1MBGR 1.60357764478696 1.40903205096024 NA NA no change no change NA NA 13:19751271 13:19835689 ARRIBA frameshift 2 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_4PH1MBGR 1.60357764478696 1.40903205096024 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_4PH1MBGR 1.60357764478696 1.40903205096024 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_5PEFNDCY 0.258051527313634 0.971032908862414 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_5PEFNDCY 0.258051527313634 0.971032908862414 NA NA no change no change NA NA 13:19677724 13:19837821 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_5PEFNDCY 0.258051527313634 0.971032908862414 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_5PJCHF6V 1.6395505612028 2.22539883920564 NA NA no change differentially expressed NA NA 13:19709542 13:19835689 ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_5PJCHF6V 1.6395505612028 2.22539883920564 NA NA no change differentially expressed NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_6T4JGBGY 1.27086477142055 2.58988793015699 NA NA no change differentially expressed NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_6T4JGBGY 1.27086477142055 2.58988793015699 NA NA no change differentially expressed NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_7G42J2SK 0.60770613359222 3.72977934203786 NA NA no change differentially expressed NA NA 13:19730239 13:19851957 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_7G42J2SK 0.60770613359222 3.72977934203786 NA NA no change differentially expressed NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_8NY9J9NQ 0.449249608424285 0.709725584746023 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 3 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_8NY9J9NQ 0.449249608424285 0.709725584746023 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_8NY9J9NQ 0.449249608424285 0.709725584746023 NA NA no change no change NA NA 13:19759323 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_8T7DZV2F 0.349912952888212 1.44718790435808 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_9M5XJ10G 0.514645904512963 0.796021992450973 NA NA no change no change NA NA 13:19726605 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_9M5XJ10G 0.514645904512963 0.796021992450973 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_9M5XJ10G 0.514645904512963 0.796021992450973 NA NA no change no change NA NA 13:19782386 13:19835689 ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_9NZ2D6AD 1.61484750706239 1.60678175132764 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_9NZ2D6AD 1.61484750706239 1.60678175132764 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_9V633J1X 1.66339262887348 2.15431546781175 NA NA no change differentially expressed NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_9V633J1X 1.66339262887348 2.15431546781175 NA NA no change differentially expressed NA NA 13:19782386 13:19835689 ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_AM70R8RG 1.49249604129631 1.60678175132764 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_AM70R8RG 1.49249604129631 1.60678175132764 NA NA no change no change NA NA 13:19782386 13:19835689 ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_AMZ70B6F 1.63428107806943 0.832957396986485 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_AMZ70B6F 1.63428107806943 0.832957396986485 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_AVYNZHSB 0.16789227063171 0.90028723393698 NA NA no change no change NA NA 13:19751271 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_AVYNZHSB 0.16789227063171 0.90028723393698 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_BJDNWMJH -0.376235581386642 -1.58369342546593 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_BJDNWMJH -0.376235581386642 -1.58369342546593 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_C0XFDP38 -0.937432069350473 -0.836484900519105 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_E0N3PTPN 0.551969108305021 0.763971221154826 NA NA no change no change NA NA 13:19751271 13:19835689 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_E0N3PTPN 0.551969108305021 0.763971221154826 NA NA no change no change NA NA 13:19759323 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_E4F1D721 -0.0555743962918803 0.0174282288589019 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_E4F1D721 -0.0555743962918803 0.0174282288589019 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_F4E8R9VY -0.66927543883737 -0.060773369414654 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_F4E8R9VY -0.66927543883737 -0.060773369414654 NA NA no change no change NA NA 13:19759323 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_F8N6CFQE 0.683186454660501 1.01067190042794 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_FAQQ0GCQ 0.653685395580177 1.309096651022 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 2 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_FAQQ0GCQ 0.653685395580177 1.309096651022 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_G23JJAZY 0.818860252179765 3.33577606350437 NA NA no change differentially expressed NA NA 13:19751271 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_G23JJAZY 0.818860252179765 3.33577606350437 NA NA no change differentially expressed NA NA 13:19772242 13:19838985 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_GV3NZ9QD 0.0761889956083232 -0.126419299574152 NA NA no change no change NA NA 13:19751271 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_GV3NZ9QD 0.0761889956083232 -0.126419299574152 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_H4B5Y6S0 0.674930434020599 1.15918955810611 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_JVW2JJ39 3.00410929884918 0.140869708922243 NA NA differentially expressed no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_N5DVEJXT 1.16469628124349 1.4972680202361 NA NA no change no change NA NA 13:19751271 13:19835689 ARRIBA frameshift 2 2 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_N5DVEJXT 1.16469628124349 1.4972680202361 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 3 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_N5DVEJXT 1.16469628124349 1.4972680202361 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 2 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_NDN62H0S 1.08884560850737 1.83217230257411 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 3 2 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_NKEAAFMW 2.11370196875764 2.26027609099277 NA NA differentially expressed differentially expressed NA NA 13:19772242 13:19835689 ARRIBA frameshift 3 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_NKEAAFMW 2.11370196875764 2.26027609099277 NA NA differentially expressed differentially expressed NA NA 13:19709542 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_NKEAAFMW 2.11370196875764 2.26027609099277 NA NA differentially expressed differentially expressed NA NA 13:19751271 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_NRPG5K4K -0.129324107958394 -0.582189329769652 NA NA no change no change NA NA 13:19751271 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_NRPG5K4K -0.129324107958394 -0.582189329769652 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_P39SQPTS 2.60502844325595 -1.40347648833967 NA NA differentially expressed no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_P39SQPTS 2.60502844325595 -1.40347648833967 NA NA differentially expressed no change NA NA 13:19751271 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_P7EY9DXG 0.884842666790303 1.74644938252245 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_QW60M0FE 0.469585904825878 -0.789350816838956 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 2 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_QW60M0FE 0.469585904825878 -0.789350816838956 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_QW60M0FE 0.469585904825878 -0.789350816838956 NA NA no change no change NA NA 13:19782386 13:19835689 ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_QWNBZ9RJ 1.89911319558158 -0.285846934544039 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_RCFQ31XF 0.343481004285617 -0.0679919370130784 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_S4V9E1XJ 0.342407124908736 0.747807418692498 NA NA no change no change NA NA 13:19730239 13:19852190 ARRIBA frameshift 1 2 high [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_S4V9E1XJ 0.342407124908736 0.747807418692498 NA NA no change no change NA NA 13:19759323 13:19835689 ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_SXCZ3CXN 0.37544855559295 1.67748495736236 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 3 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_SXCZ3CXN 0.37544855559295 1.67748495736236 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 3 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_TD1ZEQ7R 0.490732402307175 -1.10567585006066 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_TD1ZEQ7R 0.490732402307175 -1.10567585006066 NA NA no change no change NA NA 13:19751271 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_TD1ZEQ7R 0.490732402307175 -1.10567585006066 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_TV5B86ZD 1.25831613913567 2.7105263995286 NA NA no change differentially expressed NA NA 13:19772242 13:19835689 ARRIBA frameshift 3 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_TV5B86ZD 1.25831613913567 2.7105263995286 NA NA no change differentially expressed NA NA 13:19759323 13:19835689 ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_VMMJYN8Z 0.416302832511658 -0.0463917380833207 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 2 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_VMMJYN8Z 0.416302832511658 -0.0463917380833207 NA NA no change no change NA NA 13:19709542 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_VMMJYN8Z 0.416302832511658 -0.0463917380833207 NA NA no change no change NA NA 13:19782386 13:19835689 ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_VVFBW0YH 2.250179320662 2.48135335208425 NA NA differentially expressed differentially expressed NA NA 13:19772242 13:19835689 ARRIBA frameshift 2 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_VVFBW0YH 2.250179320662 2.48135335208425 NA NA differentially expressed differentially expressed NA NA 13:19677724 13:19835689 ARRIBA other 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_VVFBW0YH 2.250179320662 2.48135335208425 NA NA differentially expressed differentially expressed NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_WRQHPSXQ 0.083478050548864 -1.13724554888567 NA NA no change no change NA NA 13:19759323 13:19838985 ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_WRQHPSXQ 0.083478050548864 -1.13724554888567 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_X16PENSA -0.0170899851263501 -0.208797803582229 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_X16PENSA -0.0170899851263501 -0.208797803582229 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_XJTW0P8P 0.89978385785586 -0.270266828007205 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 2 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_XJTW0P8P 0.89978385785586 -0.270266828007205 NA NA no change no change NA NA 13:19730239 13:19835689 ARRIBA in-frame 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_XJTW0P8P 0.89978385785586 -0.270266828007205 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_Y8D1F5WW 1.69211225134949 0.463717360646513 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 3 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_Y8D1F5WW 1.69211225134949 0.463717360646513 NA NA no change no change NA NA 13:19759323 13:19835689 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_Y8D1F5WW 1.69211225134949 0.463717360646513 NA NA no change no change NA NA 13:19730239 13:19838985 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_Z6BWR941 0.234454506054723 0.592275417230542 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 3 0 high [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_Z6BWR941 0.234454506054723 0.592275417230542 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 2 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_Z6BWR941 0.234454506054723 0.592275417230542 NA NA no change no change NA NA 13:19759323 13:19835689 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_ZV68CES9 0.586735567304619 1.92602238725037 NA NA no change no change NA NA 13:19741565 13:19835689 ARRIBA frameshift 2 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_ZV68CES9 0.586735567304619 1.92602238725037 NA NA no change no change NA NA 13:19772242 13:19835689 ARRIBA frameshift 2 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPC1--ZMYM5 BS_ZV68CES9 0.586735567304619 1.92602238725037 NA NA no change no change NA NA 13:19751271 13:19835689 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA -PSPH--PSPHP1(369)/RNU6-1126P(15711) BS_W18SF91A 0.940795044983733 1.37501521011169 NA NA no change no change NA NA 7:56011806 7:55773657 ARRIBA frameshift 2 0 low [],inversion PSPH NA PSPHP1 RNU6-1126P NA NA NA NA NA -PTBP1--LINC01836 BS_Q3TBCK4V 3.18818301114211 NA NA NA differentially expressed NA NA NA 19:808762 19:784815 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr19:0.01Mb],LOCAL_REARRANGEMENT:+:[11995]],duplication PTBP1 NA LINC01836 NA Oncogene NA NA NA NA -PTCH1--AL513318.2 BS_AZN38B7V 1.12143649946739 NA NA NA no change NA NA NA 9:95506407 9:87010210 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr9:8.40Mb]],deletion PTCH1 NA AL513318.2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -PTCH1--GAS1RR BS_AZN38B7V 1.12143649946739 NA NA NA no change NA NA NA 9:95506407 9:86972354 ARRIBA frameshift 15 2 high [INTRACHROMOSOMAL[chr9:8.44Mb]],deletion/5'-5' PTCH1 NA GAS1RR NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -PTDSS2--SBF2 BS_4QW2S1Q8 -1.31181846326075 0.836614320340565 NA NA no change no change NA NA 11:479152 11:10042981 ARRIBA in-frame 8 0 high [INTRACHROMOSOMAL[chr11:9.29Mb]],inversion PTDSS2 NA SBF2 NA NA NA NA NA NA -PTDSS2--SBF2 BS_MX23ZY0Y -0.380399654903859 1.14670289810466 NA NA no change no change NA NA 11:479152 11:10042981 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:9.29Mb]],inversion PTDSS2 NA SBF2 NA NA NA NA NA NA -PTDSS2--SBF2 BS_P9JP6JFA -1.04975428387963 0.0229166050756886 NA NA no change no change NA NA 11:479152 11:10042981 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr11:9.29Mb]],inversion PTDSS2 NA SBF2 NA NA NA NA NA NA -PTGDS--P2RX5 BS_J60G8DMK 4.27744538120632 1.96919338820163 NA NA differentially expressed no change NA NA 9:136977692 17:3685580 ARRIBA frameshift 3 0 low [INTERCHROMOSOMAL[chr9--chr17]],translocation PTGDS NA P2RX5 NA NA NA NA NA NA -PTGFRN--LINC01725 BS_D9GEXXHX 1.07830831701224 NA NA NA no change NA NA NA 1:116910252 1:83860437 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:33.05Mb]],duplication/5'-5' PTGFRN NA LINC01725 NA NA NA NA NA NA -PTGIS--AL391117.1 BS_PNYN0AYD 11.0982946915767 NA NA NA differentially expressed NA NA NA 20:49568043 9:23006197 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr20--chr9]],translocation PTGIS NA AL391117.1 NA Oncogene NA NA NA NA -PTGIS--AL391117.1 BS_PNYN0AYD 11.0982946915767 NA NA NA differentially expressed NA NA NA 20:49568043 9:22874319 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr20--chr9]],translocation PTGIS NA AL391117.1 NA Oncogene NA NA NA NA -PTK2--AARD(1133)/SLC30A8(4653) BS_YB07VF1X 0.469475321509506 -0.465260465825876 NA -0.560109160459538 no change no change NA no change 8:140846260 8:116945620 ARRIBA frameshift 4 1 high [],deletion PTK2 NA AARD SLC30A8 Kinase NA NA NA NA -PTK2--AC022893.2(26130)/TERF1(32289) BS_HZRM07TW 0.446430785726616 NA NA 0.751008466275184 no change NA NA no change 8:140735251 8:72976575 ARRIBA frameshift 14 3 high [],deletion PTK2 NA AC022893.2 TERF1 Kinase NA NA TranscriptionFactor NA -PTN--C7orf55-LUC7L2 BS_593HEWBF -0.239430845638147 -1.21524071741536 NA NA no change no change NA NA 7:137343439 7:139376062 ARRIBA other 69 5 high [INTRACHROMOSOMAL[chr7:2.00Mb]],inversion PTN NA C7orf55-LUC7L2 NA Oncogene NA NA NA NA -PTN--FKBP6 BS_6WP1FHTE 1.5222707119412 0.31910465580418 NA NA no change no change NA NA 7:137343439 7:73328737 ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr7:63.87Mb]],deletion/5'-5' PTN NA FKBP6 NA Oncogene NA NA NA NA -PTN--HSPE1 BS_84XCR9GG 0.614534615901653 0.873008977398943 NA NA no change no change NA NA 7:137300978 2:197500345 ARRIBA other 5 1 medium [INTERCHROMOSOMAL[chr7--chr2]],translocation PTN NA HSPE1 NA Oncogene NA NA NA NA -PTN--LUC7L2 BS_593HEWBF -0.239430845638147 2.00993246090205 NA NA no change differentially expressed NA NA 7:137343439 7:139376062 ARRIBA other 69 5 high [INTRACHROMOSOMAL[chr7:2.00Mb]],inversion PTN NA LUC7L2 NA Oncogene NA NA NA NA -PTP4A1--RPL13AP25(350107)/AL390964.1(149421) BS_K17VQECG 1.14964744692018 7.82260113004895 NA NA no change differentially expressed NA NA 6:63572719 13:54791422 ARRIBA other 2 0 medium [],translocation PTP4A1 NA RPL13AP25 AL390964.1 NA NA NA NA NA -PTPN11--TXNRD1 BS_QZFEB94Q 0.165918309438402 1.19184632488631 NA NA no change no change NA NA 12:112419125 12:104325337 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:8.07Mb]],duplication PTPN11 NA TXNRD1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -PTPN11--TXNRD1 BS_QZFEB94Q 0.165918309438402 1.19184632488631 NA NA no change no change NA NA 12:112419125 12:104339139 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:8.07Mb]],duplication PTPN11 NA TXNRD1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -PTPN12--PLXNA4 BS_WKESC3XN 3.55161676444223 1.29366870885478 NA NA differentially expressed no change NA NA 7:77571186 7:132298222 ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr7:54.48Mb]],inversion PTPN12 NA PLXNA4 NA TumorSuppressorGene NA NA NA NA -PTPN12--PLXNA4 BS_WKESC3XN 3.55161676444223 1.29366870885478 NA NA differentially expressed no change NA NA 7:77581503 7:132298222 ARRIBA in-frame 3 1 high [INTRACHROMOSOMAL[chr7:54.48Mb]],inversion PTPN12 NA PLXNA4 NA TumorSuppressorGene NA NA NA NA -PTPN12--PLXNA4 BS_WKESC3XN 3.55161676444223 1.29366870885478 NA NA differentially expressed no change NA NA 7:77537645 7:132298222 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:54.48Mb]],inversion PTPN12 NA PLXNA4 NA TumorSuppressorGene NA NA NA NA -PTPN12--SRRM3 BS_996ZS2A4 0.261875500691366 -1.54925212019057 NA NA no change no change NA NA 7:77639324 7:76248188 ARRIBA other 1 1 high [CCLE,INTRACHROMOSOMAL[chr7:1.25Mb]],duplication PTPN12 NA SRRM3 NA TumorSuppressorGene NA NA NA NA -PTPN3--PTPN3 BS_N6NE6B3W 0.36279205444326 0.36279205444326 NA NA no change no change NA NA 9:109404448 9:109438234 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.12Mb]],duplication/non-canonical_splicing PTPN3 NA PTPN3 NA NA NA NA NA NA -PTPN4--PTPN4 BS_KVNGNETA 3.08546257307409 3.08546257307409 NA NA differentially expressed differentially expressed NA NA 2:119946574 2:119926598 ARRIBA frameshift 9 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.22Mb]],duplication/non-canonical_splicing PTPN4 NA PTPN4 NA NA NA NA NA NA -PTPRD--AL135923.2(319832)/PTPRD(33334) BS_V96WVE3Z 0.170303112859011 NA NA 0.170303112859011 no change NA NA no change 9:9938507 9:8280912 ARRIBA other 2 0 medium [],deletion PTPRD NA AL135923.2 PTPRD TumorSuppressorGene, CosmicCensus, Oncogene NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA -PTPRG--ATP13A4 BS_FAQQ0GCQ 5.82806445706272 -0.5449368149364 NA NA differentially expressed no change NA NA 3:61562372 3:193442556 ARRIBA in-frame 4 3 high [INTRACHROMOSOMAL[chr3:131.10Mb]],inversion PTPRG NA ATP13A4 NA Oncogene NA NA NA NA -PTPRG--OSBPL10 BS_FAQQ0GCQ 5.82806445706272 4.78255711080107 NA NA differentially expressed differentially expressed NA NA 3:61562372 3:31733411 ARRIBA in-frame 8 0 high [INTRACHROMOSOMAL[chr3:29.48Mb]],inversion PTPRG NA OSBPL10 NA Oncogene NA NA NA NA -PTPRG--OSBPL10 BS_FAQQ0GCQ 5.82806445706272 4.78255711080107 NA NA differentially expressed differentially expressed NA NA 3:61562372 3:31702508 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:29.48Mb]],inversion PTPRG NA OSBPL10 NA Oncogene NA NA NA NA -PTPRG--PTPRG BS_ZR96A4FH 4.44311073324993 4.44311073324993 NA NA differentially expressed differentially expressed NA NA 3:61755150 3:61748878 ARRIBA in-frame 11 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr3:0.74Mb]],duplication PTPRG NA PTPRG NA Oncogene Oncogene NA NA NA -PTPRH--CDH10(6647)/AC091893.1(97749) BS_6JHXXVR7 4.73350400506873 -2.71137582563851 NA NA differentially expressed differentially expressed NA NA 19:55186231 5:24651625 ARRIBA frameshift 17 4 medium [],translocation PTPRH NA CDH10 AC091893.1 Oncogene CosmicCensus, Oncogene NA NA NA -PTPRH--CDH10(6647)/AC091893.1(97749) BS_KE56MMY0 3.99496598971688 -2.7367647348177 NA NA differentially expressed differentially expressed NA NA 19:55186231 5:24651625 ARRIBA frameshift 7 2 medium [],translocation PTPRH NA CDH10 AC091893.1 Oncogene CosmicCensus, Oncogene NA NA NA -PTPRJ--MIR8070(56335)/USP47(1866) BS_MX23ZY0Y 6.94172669069025 NA NA -0.243139922765431 differentially expressed NA NA no change 11:48112983 11:11839557 ARRIBA frameshift 4 2 high [],inversion PTPRJ NA MIR8070 USP47 TumorSuppressorGene, Oncogene NA NA NA NA -PTPRM--PTPRM BS_5NWDARXG -0.0915275520407163 -0.0915275520407163 NA NA no change no change NA NA 18:8088851 18:7761010 ARRIBA frameshift 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.84Mb]],inversion/3'-3' PTPRM NA PTPRM NA NA NA NA NA NA -PTPRN2--PTPRN2 BS_1JDG6JV5 -1.63318675403232 -1.63318675403232 NA NA no change no change NA NA 7:157571440 7:157595315 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:1.05Mb]],duplication/non-canonical_splicing PTPRN2 NA PTPRN2 NA NA NA NA NA NA -PTPRN2--PTPRN2 BS_2ADZNNV4 -1.15056591003556 -1.15056591003556 NA NA no change no change NA NA 7:157571440 7:157595315 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:1.05Mb]],duplication/non-canonical_splicing PTPRN2 NA PTPRN2 NA NA NA NA NA NA -PTPRN2--PTPRN2 BS_8PNA0V6R -1.28719390080861 -1.28719390080861 NA NA no change no change NA NA 7:157571440 7:157595315 ARRIBA frameshift 29 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:1.05Mb]],duplication/non-canonical_splicing PTPRN2 NA PTPRN2 NA NA NA NA NA NA -PTPRN2--PTPRN2 BS_8RHPJ740 -1.6703284179073 -1.6703284179073 NA NA no change no change NA NA 7:157595238 7:157682937 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:1.05Mb]],duplication/non-canonical_splicing PTPRN2 NA PTPRN2 NA NA NA NA NA NA -PTPRN2--PTPRN2 BS_9DFBHHB5 -0.526220378864369 -0.526220378864369 NA NA no change no change NA NA 7:157571440 7:157595315 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:1.05Mb]],duplication/non-canonical_splicing PTPRN2 NA PTPRN2 NA NA NA NA NA NA -PTPRN2--PTPRN2 BS_NDN62H0S 1.61853798413843 1.61853798413843 NA NA no change no change NA NA 7:157595238 7:157682937 ARRIBA in-frame 34 5 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:1.05Mb]],duplication/non-canonical_splicing PTPRN2 NA PTPRN2 NA NA NA NA NA NA -PTPRO--GRIN2B(70209)/AC092470.1(117580) BS_GJNCYABP 0.808102970474698 -0.287432559949975 NA NA no change no change NA NA 12:15569498 12:14052166 ARRIBA frameshift 2 0 medium [],inversion PTPRO NA GRIN2B AC092470.1 NA NA NA NA NA -PTPRO--PTPRO BS_CGB2WS2A 0.327039813819888 0.327039813819888 NA NA no change no change NA NA 12:15504069 12:15483974 ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRO NA PTPRO NA NA NA NA NA NA -PTPRO--PTPRO BS_M4NVX721 0.348376844877581 0.348376844877581 NA NA no change no change NA NA 12:15504069 12:15483974 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRO NA PTPRO NA NA NA NA NA NA -PTPRO--PTPRO BS_N6NE6B3W 0.822707591183839 0.822707591183839 NA NA no change no change NA NA 12:15504069 12:15483974 ARRIBA frameshift 14 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRO NA PTPRO NA NA NA NA NA NA -PTPRO--PTPRO BS_RSRPX3S8 0.412538201411398 0.412538201411398 NA NA no change no change NA NA 12:15504069 12:15483974 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRO NA PTPRO NA NA NA NA NA NA -PTPRO--PTPRO BS_S69QZAJR 0.0137846003520665 0.0137846003520665 NA NA no change no change NA NA 12:15504069 12:15483974 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRO NA PTPRO NA NA NA NA NA NA -PTPRO--PTPRO BS_VNWKNRY4 -0.337514964291316 -0.337514964291316 NA NA no change no change NA NA 12:15504069 12:15483974 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRO NA PTPRO NA NA NA NA NA NA -PTPRQ--PTPRQ BS_7BTZQKYY 9.52301674690196 9.52301674690196 NA NA differentially expressed differentially expressed NA NA 12:80510443 12:80443752 ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRQ NA PTPRQ NA NA NA NA NA NA -PTPRQ--PTPRQ BS_HZ707C55 7.40376088769754 7.40376088769754 NA NA differentially expressed differentially expressed NA NA 12:80472251 12:80420753 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRQ NA PTPRQ NA NA NA NA NA NA -PTPRQ--PTPRQ BS_RHD7XPNP 10.1243411686242 10.1243411686242 NA NA differentially expressed differentially expressed NA NA 12:80510443 12:80443752 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRQ NA PTPRQ NA NA NA NA NA NA -PTPRQ--PTPRQ BS_Z85M2R3N 8.61887598208103 8.61887598208103 NA NA differentially expressed differentially expressed NA NA 12:80445717 12:80424438 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRQ NA PTPRQ NA NA NA NA NA NA -PTPRR--PTPRR BS_0WVJYM9R -0.786128933317247 -0.786128933317247 NA NA no change no change NA NA 12:70656704 12:70662605 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_0X9EGHY2 0.215101385115911 0.215101385115911 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_13CGKADW 0.773783900659383 0.773783900659383 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_1T19NFJ8 0.0817173609067019 0.0817173609067019 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_2SFTWNVE 0.278525063942866 0.278525063942866 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_2XD3MNKD -0.910369165540095 -0.910369165540095 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_398KYV92 -0.0164008800220512 -0.0164008800220512 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_39CGACC7 -0.410610977094523 -0.410610977094523 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_3P20Q2C3 0.0434440922078983 0.0434440922078983 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_470DYRJQ 0.689713966731151 0.689713966731151 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_5K3R0F5D 0.871687914121641 0.871687914121641 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_5PEFNDCY -0.358193833252411 -0.358193833252411 NA NA no change no change NA NA 12:70656704 12:70662605 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_61E80SD6 1.59570899645565 1.59570899645565 NA NA no change no change NA NA 12:70745818 12:70764778 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_7B89YR6K 0.14137790700346 0.14137790700346 NA NA no change no change NA NA 12:70656704 12:70662605 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_7FWZ518S 1.55728250011097 1.55728250011097 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_7XRN3CFX -0.407043072486567 -0.407043072486567 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_92VDQ0NE 0.472752618083416 0.472752618083416 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_9DZ253JY -0.234979431084085 -0.234979431084085 NA NA no change no change NA NA 12:70656704 12:70662605 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_9F09XV62 -0.983564450329803 -0.983564450329803 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_AJ6X83G5 1.41805696943518 1.41805696943518 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_AMQGM1V9 1.13890506625993 1.13890506625993 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_BSV07M7Z 0.938419285365126 0.938419285365126 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_CGB2WS2A -0.0794461781350478 -0.0794461781350478 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_CREQ97QC 1.05844058080376 1.05844058080376 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_DMZP9G1H 0.864438762767013 0.864438762767013 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_ET8CJXSF -0.294978020849 -0.294978020849 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_FEPRNEXX 1.6259545857554 1.6259545857554 NA NA no change no change NA NA 12:70656704 12:70662605 ARRIBA frameshift 20 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_GS1KR5PK 0.38873906280004 0.38873906280004 NA NA no change no change NA NA 12:70656704 12:70662605 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_GYA4V1RD -0.361616742980411 -0.361616742980411 NA NA no change no change NA NA 12:70656704 12:70662605 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_HCP5C912 0.609762789806307 0.609762789806307 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_J71N7D09 1.37247494145193 1.37247494145193 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_JXNZYGCR -0.805947745607474 -0.805947745607474 NA NA no change no change NA NA 12:70745818 12:70761626 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_K5802F84 -0.0189615576261617 -0.0189615576261617 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_KPT2WPHW 0.937280519875073 0.937280519875073 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_N6NE6B3W 1.7292986657504 1.7292986657504 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 34 5 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_NT9NZYFD -0.728595982868452 -0.728595982868452 NA NA no change no change NA NA 12:70656704 12:70701323 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_NYS8TRCB -0.75222786743293 -0.75222786743293 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_QNAQGAV6 -0.0318490255017838 -0.0318490255017838 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_QPPPGYP4 2.50819988883655 2.50819988883655 NA NA differentially expressed differentially expressed NA NA 12:70684127 12:70701323 ARRIBA frameshift 16 3 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_QV51J756 0.791965628730947 0.791965628730947 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_S69QZAJR 0.366765913224395 0.366765913224395 NA NA no change no change NA NA 12:70656704 12:70662605 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_SFKZSJN1 0.788093074927602 0.788093074927602 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_TG93XC55 1.20336802115575 1.20336802115575 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_V3Z3DB4N -0.45800372480202 -0.45800372480202 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_VMMJYN8Z 0.509345419810238 0.509345419810238 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_VTJ9ESSV -0.742718206431038 -0.742718206431038 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_WCRKYV0T 0.626192577199567 0.626192577199567 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_X0F9AYEC 0.191750293878943 0.191750293878943 NA NA no change no change NA NA 12:70656704 12:70701323 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_XJTW0P8P 0.756646102693483 0.756646102693483 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_YMAJC22S 0.395973389621181 0.395973389621181 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_ZR96A4FH 0.464275287731138 0.464275287731138 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRR--PTPRR BS_ZRM0W01M 1.34779976585814 1.34779976585814 NA NA no change no change NA NA 12:70684127 12:70701323 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA -PTPRS--AL442163.1 BS_1A6MQ9ZA 1.02524818427597 NA NA NA no change NA NA NA 19:5258017 14:42362906 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr19--chr14]],translocation PTPRS NA AL442163.1 NA NA NA NA NA NA -PTPRS--KDM4B BS_HZRM07TW 5.12998881603227 3.40487074182261 NA NA differentially expressed differentially expressed NA NA 19:5340664 19:5047476 ARRIBA other 2 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_INVERSION:-:+:[4900]],inversion PTPRS NA KDM4B NA NA NA NA NA NA -PTPRS--KDM4B BS_HZRM07TW 5.12998881603227 3.40487074182261 NA NA differentially expressed differentially expressed NA NA 19:5340664 19:5110622 ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_INVERSION:-:+:[4900]],inversion PTPRS NA KDM4B NA NA NA NA NA NA -PTPRS--R3HDM4 BS_61E80SD6 3.39341364168888 1.58678078210218 NA NA differentially expressed no change NA NA 19:5340664 19:902130 ARRIBA other 90 4 high [INTRACHROMOSOMAL[chr19:4.25Mb]],deletion PTPRS NA R3HDM4 NA NA NA NA NA NA -PTPRS--R3HDM4 BS_61E80SD6 3.39341364168888 1.58678078210218 NA NA differentially expressed no change NA NA 19:5340664 19:902627 ARRIBA other 2 5 medium [INTRACHROMOSOMAL[chr19:4.25Mb]],deletion PTPRS NA R3HDM4 NA NA NA NA NA NA -PTPRT--LINC01527 BS_1A6MQ9ZA 0.944601384687439 140.028567063901 NA NA no change differentially expressed NA NA 20:42115199 1:152931811 ARRIBA frameshift 5 1 high [INTERCHROMOSOMAL[chr20--chr1]],translocation PTPRT NA LINC01527 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -PTPRU--AL807740.1 BS_NGHK9RZP 0.826058735460997 NA NA NA no change NA NA NA 1:29236717 X:20473146 ARRIBA frameshift 14 2 high [INTERCHROMOSOMAL[chr1--chrX]],translocation PTPRU NA AL807740.1 NA Oncogene NA NA NA NA -PTPRU--AL807740.1 BS_NGHK9RZP 0.826058735460997 NA NA NA no change NA NA NA 1:29236717 X:20474102 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr1--chrX]],translocation PTPRU NA AL807740.1 NA Oncogene NA NA NA NA -PTPRU--AL928596.1(65707)/AL807740.1(59836) BS_NGHK9RZP 0.826058735460997 NA NA NA no change NA NA NA 1:29236717 X:20383490 ARRIBA frameshift 2 1 high [],translocation PTPRU NA AL928596.1 AL807740.1 Oncogene NA NA NA NA -PTPRZ1--AHCYL2 BS_593HEWBF 3.6146721159061 5.50084022548655 NA NA differentially expressed differentially expressed NA NA 7:121873557 7:129379641 ARRIBA frameshift 143 31 high [INTRACHROMOSOMAL[chr7:7.16Mb]],deletion PTPRZ1 NA AHCYL2 NA NA NA NA NA NA -PTPRZ1--AHCYL2 BS_593HEWBF 3.6146721159061 5.50084022548655 NA NA differentially expressed differentially expressed NA NA 7:121873557 7:129379638 ARRIBA frameshift 48 31 high [INTRACHROMOSOMAL[chr7:7.16Mb]],deletion PTPRZ1 NA AHCYL2 NA NA NA NA NA NA -PTPRZ1--AHCYL2 BS_593HEWBF 3.6146721159061 5.50084022548655 NA NA differentially expressed differentially expressed NA NA 7:121873557 7:129389056 ARRIBA in-frame 1 3 medium [INTRACHROMOSOMAL[chr7:7.16Mb]],deletion PTPRZ1 NA AHCYL2 NA NA NA NA NA NA -PTPRZ1--AHCYL2 BS_593HEWBF 3.6146721159061 5.50084022548655 NA NA differentially expressed differentially expressed NA NA 7:121873557 7:129397222 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:7.16Mb]],deletion PTPRZ1 NA AHCYL2 NA NA NA NA NA NA -PTPRZ1--ARAP2 BS_GW0GKWMS 3.65038068757468 1.33817624198497 NA NA differentially expressed no change NA NA 7:121972692 4:36107693 ARRIBA frameshift 3 1 medium [INTERCHROMOSOMAL[chr7--chr4]],translocation PTPRZ1 NA ARAP2 NA NA Oncogene NA NA NA -PTPRZ1--MET BS_45J79YTF 4.69881043444573 11.3103218377188 NA NA differentially expressed differentially expressed NA NA 7:122011309 7:116699071 ARRIBA in-frame 228 13 high [ChimerPub,FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr7:5.07Mb]],duplication PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -PTPRZ1--MET BS_45J79YTF 4.69881043444573 11.3103218377188 NA NA differentially expressed differentially expressed NA NA 7:122013889 7:116699071 ARRIBA in-frame 16 13 high [ChimerPub,FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr7:5.07Mb]],duplication PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -PTPRZ1--MET BS_7327SDAQ 4.13222521914009 1.60524498205299 NA NA differentially expressed no change NA NA 7:121928221 7:116699071 ARRIBA in-frame 3 0 low [ChimerPub,FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr7:5.07Mb]],duplication PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -PTPRZ1--MET BS_7327SDAQ 4.13222521914009 1.60524498205299 NA NA differentially expressed no change NA NA 7:121928221 7:116695750 ARRIBA frameshift 3 0 low [ChimerPub,FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr7:5.07Mb]],duplication PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -PTPRZ1--MET BS_7327SDAQ 4.13222521914009 1.60524498205299 NA NA differentially expressed no change NA NA 7:121928221 7:116731668 ARRIBA frameshift 1 0 low [ChimerPub,FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr7:5.07Mb]],duplication PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -PUDP--ACOT9 BS_FCAKKZ20 NA -3.15373054760138 NA NA NA differentially expressed NA NA X:7077220 X:23762582 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chrX:16.55Mb]],duplication PUDP NA ACOT9 NA NA NA NA NA NA -PUDP--ACOT9 BS_FCAKKZ20 NA -3.15373054760138 NA NA NA differentially expressed NA NA X:7077220 X:23736016 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chrX:16.55Mb]],duplication PUDP NA ACOT9 NA NA NA NA NA NA -PVRIG2P--AKAP9 BS_H4B5Y6S0 3.02623991014671 3.26596172153844 NA NA differentially expressed differentially expressed NA NA 7:100353270 7:92029924 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr7:8.24Mb]],duplication PVRIG2P NA AKAP9 NA NA CosmicCensus, Oncogene NA NA NA -PVT1_1--AC009446.1 BS_WMEHNDSK 26.8186219605432 NA NA NA differentially expressed NA NA NA 8:127794734 8:71702215 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr8:56.09Mb]],duplication PVT1_1 NA AC009446.1 NA NA NA NA NA NA -PVT1_1--AC105031.2 BS_1AYRM596 7.92270847104122 NA NA NA differentially expressed NA NA NA 8:127794734 8:82916879 ARRIBA other 10 2 high [INTRACHROMOSOMAL[chr8:44.84Mb]],inversion PVT1_1 NA AC105031.2 NA NA NA NA NA NA -PVT1_1--AC105031.2 BS_1AYRM596 7.92270847104122 NA NA NA differentially expressed NA NA NA 8:127794734 8:82863110 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:44.84Mb]],inversion PVT1_1 NA AC105031.2 NA NA NA NA NA NA -PVT1_1--ASAP1 BS_HE57E1RP 20.391180625331 3.96708850840407 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:130236994 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr8:2.26Mb]],inversion PVT1_1 NA ASAP1 NA NA NA NA NA NA -PVT1_1--CASC8 BS_FKDQJJB5 25.9507984043968 59.2735410856717 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:127420963 ARRIBA other 15 1 medium [INTRACHROMOSOMAL[chr8:0.31Mb]],inversion PVT1_1 NA CASC8 NA NA NA NA NA NA -PVT1_1--CASC8 BS_FKDQJJB5 25.9507984043968 59.2735410856717 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:127290060 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr8:0.31Mb]],inversion PVT1_1 NA CASC8 NA NA NA NA NA NA -PVT1_1--CASC8 BS_FKDQJJB5 25.9507984043968 59.2735410856717 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:127323154 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr8:0.31Mb]],inversion PVT1_1 NA CASC8 NA NA NA NA NA NA -PVT1_1--FAM135B BS_WMEHNDSK 26.8186219605432 6.47933894592062 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:138368002 ARRIBA other 18 1 medium [INTRACHROMOSOMAL[chr8:10.34Mb]],inversion PVT1_1 NA FAM135B NA NA CosmicCensus NA NA NA -PVT1_1--FAM135B BS_WMEHNDSK 26.8186219605432 6.47933894592062 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:138310920 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:10.34Mb]],inversion PVT1_1 NA FAM135B NA NA CosmicCensus NA NA NA -PVT1_1--LRRC69 BS_HE57E1RP 20.391180625331 23.1147562606062 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:91189522 ARRIBA other 47 4 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1_1 NA LRRC69 NA NA NA NA NA NA -PVT1_1--LRRC69 BS_HE57E1RP 20.391180625331 23.1147562606062 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:91200613 ARRIBA other 34 2 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1_1 NA LRRC69 NA NA NA NA NA NA -PVT1_1--LRRC69 BS_HE57E1RP 20.391180625331 23.1147562606062 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:91218890 ARRIBA other 30 1 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1_1 NA LRRC69 NA NA NA NA NA NA -PVT1_1--LRRC69 BS_HE57E1RP 20.391180625331 23.1147562606062 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:91133110 ARRIBA other 24 4 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1_1 NA LRRC69 NA NA NA NA NA NA -PVT1_1--LRRC69 BS_HE57E1RP 20.391180625331 23.1147562606062 NA NA differentially expressed differentially expressed NA NA 8:127794732 8:91200611 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1_1 NA LRRC69 NA NA NA NA NA NA -PVT1_1--MACROD2 BS_TZVFR600 21.5790899383109 5.62066544801531 NA NA differentially expressed differentially expressed NA NA 8:127794734 20:14580438 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr8--chr20]],translocation/5'-5' PVT1_1 NA MACROD2 NA NA NA NA NA NA -PVT1_1--MACROD2-IT1 BS_TZVFR600 21.5790899383109 55.2546825411116 NA NA differentially expressed differentially expressed NA NA 8:127794734 20:14580438 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr8--chr20]],translocation/5'-5' PVT1_1 NA MACROD2-IT1 NA NA NA NA NA NA -PVT1_1--PCAT1 BS_FKDQJJB5 25.9507984043968 45.6084847596728 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:126877672 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.77Mb]],duplication PVT1_1 NA PCAT1 NA NA NA NA NA NA -PVT1_1--PCAT1 BS_FKDQJJB5 25.9507984043968 45.6084847596728 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:127006555 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.77Mb]],duplication PVT1_1 NA PCAT1 NA NA NA NA NA NA -PVT1_1--SLC26A7 BS_HE57E1RP 20.391180625331 46.5031594278151 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:91218890 ARRIBA other 60 1 high [INTRACHROMOSOMAL[chr8:36.40Mb]],duplication PVT1_1 NA SLC26A7 NA NA NA NA NA NA -PVT1_1--SLC26A7 BS_HE57E1RP 20.391180625331 46.5031594278151 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:91249539 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr8:36.40Mb]],duplication PVT1_1 NA SLC26A7 NA NA NA NA NA NA -PVT1_1--SLC26A7 BS_HE57E1RP 20.391180625331 46.5031594278151 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:91249619 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:36.40Mb]],duplication PVT1_1 NA SLC26A7 NA NA NA NA NA NA -PVT1_1--UTP23 BS_TZVFR600 21.5790899383109 8.20920399578089 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:116848888 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr8:10.95Mb]],duplication PVT1_1 NA UTP23 NA NA NA NA NA NA -PVT1_1--ZFAT BS_WMEHNDSK 26.8186219605432 15.2368026122682 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:134504017 ARRIBA other 499 78 high [INTRACHROMOSOMAL[chr8:6.68Mb]],deletion/5'-5' PVT1_1 NA ZFAT NA NA TranscriptionFactor NA NA NA -PVT1_1--ZFAT BS_WMEHNDSK 26.8186219605432 15.2368026122682 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:134478721 ARRIBA other 12 2 medium [INTRACHROMOSOMAL[chr8:6.68Mb]],inversion PVT1_1 NA ZFAT NA NA TranscriptionFactor NA NA NA -PVT1_1--ZFAT BS_WMEHNDSK 26.8186219605432 15.2368026122682 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:134590355 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:6.68Mb]],inversion PVT1_1 NA ZFAT NA NA TranscriptionFactor NA NA NA -PVT1_1--ZFAT BS_WMEHNDSK 26.8186219605432 15.2368026122682 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:134509749 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:6.68Mb]],inversion PVT1_1 NA ZFAT NA NA TranscriptionFactor NA NA NA -PVT1--AC009446.1 BS_WMEHNDSK 7.60148413720297 NA NA NA differentially expressed NA NA NA 8:127794734 8:71702215 ARRIBA other 3 1 low [INTRACHROMOSOMAL[chr8:56.09Mb]],duplication PVT1 NA AC009446.1 NA Oncogene NA NA NA NA -PVT1--AC060765.1 BS_R439VVPK 2.51924012845345 NA NA NA differentially expressed NA NA NA 8:127890998 8:82603527 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr8:45.12Mb]],duplication/5'-5' PVT1 NA AC060765.1 NA Oncogene NA NA NA NA -PVT1--AC105031.2 BS_1AYRM596 1.57689599880883 NA NA NA no change NA NA NA 8:127794734 8:82916879 ARRIBA other 10 2 high [INTRACHROMOSOMAL[chr8:44.84Mb]],inversion PVT1 NA AC105031.2 NA Oncogene NA NA NA NA -PVT1--AC105031.2 BS_1AYRM596 1.57689599880883 NA NA NA no change NA NA NA 8:127855319 8:82916879 ARRIBA other 2 2 high [INTRACHROMOSOMAL[chr8:44.84Mb]],inversion PVT1 NA AC105031.2 NA Oncogene NA NA NA NA -PVT1--AC105031.2 BS_1AYRM596 1.57689599880883 NA NA NA no change NA NA NA 8:127794734 8:82863110 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:44.84Mb]],inversion PVT1 NA AC105031.2 NA Oncogene NA NA NA NA -PVT1--ASAP1 BS_HE57E1RP 4.83234182466517 3.96708850840407 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:130236994 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr8:1.95Mb]],inversion PVT1 NA ASAP1 NA Oncogene NA NA NA NA -PVT1--CASC8 BS_FKDQJJB5 8.89524297744128 59.2735410856717 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:127420963 ARRIBA other 15 1 medium [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr8:0.31Mb]],inversion PVT1 NA CASC8 NA Oncogene NA NA NA NA -PVT1--CASC8 BS_FKDQJJB5 8.89524297744128 59.2735410856717 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:127290060 ARRIBA other 7 1 medium [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr8:0.31Mb]],inversion PVT1 NA CASC8 NA Oncogene NA NA NA NA -PVT1--CASC8 BS_FKDQJJB5 8.89524297744128 59.2735410856717 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:127323154 ARRIBA other 3 1 medium [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr8:0.31Mb]],inversion PVT1 NA CASC8 NA Oncogene NA NA NA NA -PVT1--CASC8 BS_FKDQJJB5 8.89524297744128 59.2735410856717 NA NA differentially expressed differentially expressed NA NA 8:127890998 8:127290060 ARRIBA other 1 1 medium [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr8:0.31Mb]],inversion PVT1 NA CASC8 NA Oncogene NA NA NA NA -PVT1--EIF3H BS_TZVFR600 7.95237672096039 7.94083432271731 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:116658980 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:11.03Mb]],inversion PVT1 NA EIF3H NA Oncogene NA NA NA NA -PVT1--EIF3H BS_TZVFR600 7.95237672096039 7.94083432271731 NA NA differentially expressed differentially expressed NA NA 8:127890998 8:116658980 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:11.03Mb]],inversion PVT1 NA EIF3H NA Oncogene NA NA NA NA -PVT1--FAM135B BS_WMEHNDSK 7.60148413720297 6.47933894592062 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:138368002 ARRIBA other 18 1 medium [INTRACHROMOSOMAL[chr8:10.03Mb]],inversion PVT1 NA FAM135B NA Oncogene CosmicCensus NA NA NA -PVT1--FAM135B BS_WMEHNDSK 7.60148413720297 6.47933894592062 NA NA differentially expressed differentially expressed NA NA 8:127796071 8:138368002 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr8:10.03Mb]],inversion PVT1 NA FAM135B NA Oncogene CosmicCensus NA NA NA -PVT1--FAM135B BS_WMEHNDSK 7.60148413720297 6.47933894592062 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:138310920 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:10.03Mb]],inversion PVT1 NA FAM135B NA Oncogene CosmicCensus NA NA NA -PVT1--LINC01111 BS_WMEHNDSK 7.60148413720297 19.2643519311093 NA NA differentially expressed differentially expressed NA NA 8:127890998 8:76475946 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr8:51.27Mb]],duplication PVT1 NA LINC01111 NA Oncogene NA NA NA NA -PVT1--LINC01111 BS_WMEHNDSK 7.60148413720297 19.2643519311093 NA NA differentially expressed differentially expressed NA NA 8:127939676 8:76475946 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr8:51.27Mb]],duplication PVT1 NA LINC01111 NA Oncogene NA NA NA NA -PVT1--LINC01111 BS_WMEHNDSK 7.60148413720297 19.2643519311093 NA NA differentially expressed differentially expressed NA NA 8:127939676 8:76433641 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr8:51.27Mb]],duplication PVT1 NA LINC01111 NA Oncogene NA NA NA NA -PVT1--LINC01111 BS_WMEHNDSK 7.60148413720297 19.2643519311093 NA NA differentially expressed differentially expressed NA NA 8:127939676 8:76518800 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:51.27Mb]],duplication PVT1 NA LINC01111 NA Oncogene NA NA NA NA -PVT1--LINC01111 BS_WMEHNDSK 7.60148413720297 19.2643519311093 NA NA differentially expressed differentially expressed NA NA 8:127890998 8:76518800 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:51.27Mb]],duplication PVT1 NA LINC01111 NA Oncogene NA NA NA NA -PVT1--LINC01111 BS_WMEHNDSK 7.60148413720297 19.2643519311093 NA NA differentially expressed differentially expressed NA NA 8:127890998 8:76433641 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:51.27Mb]],duplication PVT1 NA LINC01111 NA Oncogene NA NA NA NA -PVT1--LINC01419(121186)/AC015522.1(382627) BS_HZRM07TW 3.55024384702153 354.8325637159 NA NA differentially expressed differentially expressed NA NA 8:127890998 8:83530086 ARRIBA other 33 3 high [],inversion PVT1 NA LINC01419 AC015522.1 Oncogene NA NA NA NA -PVT1--LRRC69 BS_HE57E1RP 4.83234182466517 23.1147562606062 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:91189522 ARRIBA other 47 4 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA -PVT1--LRRC69 BS_HE57E1RP 4.83234182466517 23.1147562606062 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:91200613 ARRIBA other 35 2 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA -PVT1--LRRC69 BS_HE57E1RP 4.83234182466517 23.1147562606062 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:91218890 ARRIBA other 34 1 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA -PVT1--LRRC69 BS_HE57E1RP 4.83234182466517 23.1147562606062 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:91133110 ARRIBA other 25 4 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA -PVT1--LRRC69 BS_HE57E1RP 4.83234182466517 23.1147562606062 NA NA differentially expressed differentially expressed NA NA 8:127796071 8:91133110 ARRIBA other 6 5 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA -PVT1--LRRC69 BS_HE57E1RP 4.83234182466517 23.1147562606062 NA NA differentially expressed differentially expressed NA NA 8:127796008 8:91133110 ARRIBA other 1 5 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA -PVT1--LRRC69 BS_HE57E1RP 4.83234182466517 23.1147562606062 NA NA differentially expressed differentially expressed NA NA 8:127796071 8:91189522 ARRIBA other 2 4 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA -PVT1--LRRC69 BS_HE57E1RP 4.83234182466517 23.1147562606062 NA NA differentially expressed differentially expressed NA NA 8:127796008 8:91218890 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA -PVT1--LRRC69 BS_HE57E1RP 4.83234182466517 23.1147562606062 NA NA differentially expressed differentially expressed NA NA 8:127796008 8:91200613 ARRIBA other 2 2 medium [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA -PVT1--LRRC69 BS_HE57E1RP 4.83234182466517 23.1147562606062 NA NA differentially expressed differentially expressed NA NA 8:127794732 8:91200611 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA -PVT1--LRRC69 BS_HE57E1RP 4.83234182466517 23.1147562606062 NA NA differentially expressed differentially expressed NA NA 8:127796071 8:91218890 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA -PVT1--MACROD2 BS_TZVFR600 7.95237672096039 5.62066544801531 NA NA differentially expressed differentially expressed NA NA 8:127855319 20:14643229 ARRIBA other 17 2 medium [INTERCHROMOSOMAL[chr8--chr20]],translocation/5'-5' PVT1 NA MACROD2 NA Oncogene NA NA NA NA -PVT1--MACROD2-IT1 BS_TZVFR600 7.95237672096039 55.2546825411116 NA NA differentially expressed differentially expressed NA NA 8:127855319 20:14580438 ARRIBA other 14 1 medium [INTERCHROMOSOMAL[chr8--chr20]],translocation/5'-5' PVT1 NA MACROD2-IT1 NA Oncogene NA NA NA NA -PVT1--MYC BS_HE57E1RP 4.83234182466517 11.2109206477223 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:127738248 ARRIBA other 2 0 low [GTEx,ChimerPub,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr8:0.05Mb],LOCAL_REARRANGEMENT:+:[53099]],duplication PVT1 NA MYC NA Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -PVT1--NDRG1 BS_WMEHNDSK 7.60148413720297 2.82062245643953 NA NA differentially expressed differentially expressed NA NA 8:127855319 8:133264652 ARRIBA other 1 1 medium [ChimerPub,INTRACHROMOSOMAL[chr8:5.14Mb]],inversion PVT1 NA NDRG1 NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -PVT1--NDRG1 BS_WMEHNDSK 7.60148413720297 2.82062245643953 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:133284329 ARRIBA other 1 0 low [ChimerPub,INTRACHROMOSOMAL[chr8:5.14Mb]],inversion PVT1 NA NDRG1 NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -PVT1--PCAT1 BS_FKDQJJB5 8.89524297744128 45.6084847596728 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:126877864 ARRIBA other 3 0 low [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.77Mb]],inversion/3'-3' PVT1 NA PCAT1 NA Oncogene NA NA NA NA -PVT1--PCAT1 BS_FKDQJJB5 8.89524297744128 45.6084847596728 NA NA differentially expressed differentially expressed NA NA 8:127989291 8:126877672 ARRIBA other 2 0 low [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.77Mb]],duplication PVT1 NA PCAT1 NA Oncogene NA NA NA NA -PVT1--PCAT1 BS_FKDQJJB5 8.89524297744128 45.6084847596728 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:126877672 ARRIBA other 1 0 low [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.77Mb]],duplication PVT1 NA PCAT1 NA Oncogene NA NA NA NA -PVT1--PCAT1 BS_FKDQJJB5 8.89524297744128 45.6084847596728 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:127006555 ARRIBA other 1 0 low [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.77Mb]],duplication PVT1 NA PCAT1 NA Oncogene NA NA NA NA -PVT1--PCAT1 BS_FKDQJJB5 8.89524297744128 45.6084847596728 NA NA differentially expressed differentially expressed NA NA 8:127989291 8:127006555 ARRIBA other 1 0 low [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.77Mb]],duplication PVT1 NA PCAT1 NA Oncogene NA NA NA NA -PVT1--SLC26A7 BS_HE57E1RP 4.83234182466517 46.5031594278151 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:91218890 ARRIBA other 64 1 high [INTRACHROMOSOMAL[chr8:36.40Mb]],duplication PVT1 NA SLC26A7 NA Oncogene NA NA NA NA -PVT1--SLC26A7 BS_HE57E1RP 4.83234182466517 46.5031594278151 NA NA differentially expressed differentially expressed NA NA 8:127796008 8:91218890 ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr8:36.40Mb]],duplication PVT1 NA SLC26A7 NA Oncogene NA NA NA NA -PVT1--SLC26A7 BS_HE57E1RP 4.83234182466517 46.5031594278151 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:91249539 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr8:36.40Mb]],duplication PVT1 NA SLC26A7 NA Oncogene NA NA NA NA -PVT1--SLC26A7 BS_HE57E1RP 4.83234182466517 46.5031594278151 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:91249619 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:36.40Mb]],duplication PVT1 NA SLC26A7 NA Oncogene NA NA NA NA -PVT1--SLC26A7 BS_HE57E1RP 4.83234182466517 46.5031594278151 NA NA differentially expressed differentially expressed NA NA 8:127796008 8:91249539 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:36.40Mb]],duplication PVT1 NA SLC26A7 NA Oncogene NA NA NA NA -PVT1--UTP23 BS_TZVFR600 7.95237672096039 8.20920399578089 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:116848888 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr8:10.95Mb]],duplication PVT1 NA UTP23 NA Oncogene NA NA NA NA -PVT1--ZFAT BS_WMEHNDSK 7.60148413720297 15.2368026122682 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:134504017 ARRIBA other 499 83 high [INTRACHROMOSOMAL[chr8:6.38Mb]],deletion/5'-5' PVT1 NA ZFAT NA Oncogene TranscriptionFactor NA NA NA -PVT1--ZFAT BS_WMEHNDSK 7.60148413720297 15.2368026122682 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:134478721 ARRIBA other 13 2 medium [INTRACHROMOSOMAL[chr8:6.38Mb]],inversion PVT1 NA ZFAT NA Oncogene TranscriptionFactor NA NA NA -PVT1--ZFAT BS_WMEHNDSK 7.60148413720297 15.2368026122682 NA NA differentially expressed differentially expressed NA NA 8:127796008 8:134478721 ARRIBA other 3 2 medium [INTRACHROMOSOMAL[chr8:6.38Mb]],inversion PVT1 NA ZFAT NA Oncogene TranscriptionFactor NA NA NA -PVT1--ZFAT BS_WMEHNDSK 7.60148413720297 15.2368026122682 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:134590355 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:6.38Mb]],inversion PVT1 NA ZFAT NA Oncogene TranscriptionFactor NA NA NA -PVT1--ZFAT BS_WMEHNDSK 7.60148413720297 15.2368026122682 NA NA differentially expressed differentially expressed NA NA 8:127794734 8:134509749 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:6.38Mb]],inversion PVT1 NA ZFAT NA Oncogene TranscriptionFactor NA NA NA -PWRN1--PWRN1 BS_4PH1MBGR 0.232467050611682 0.232467050611682 NA NA no change no change NA NA 15:24535806 15:24508861 ARRIBA other 2 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.16Mb]],duplication/non-canonical_splicing PWRN1 NA PWRN1 NA NA NA NA NA NA -PWRN1--PWRN1 BS_QWNBZ9RJ 1.11864149651461 1.11864149651461 NA NA no change no change NA NA 15:24535806 15:24508861 ARRIBA other 9 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.16Mb]],duplication/non-canonical_splicing PWRN1 NA PWRN1 NA NA NA NA NA NA -PWRN1--PWRN3(43499)/PWRN1(1671) BS_TRKH2SPE 2.92668119667835 -0.502464003963699 NA 2.92668119667835 differentially expressed no change NA differentially expressed 15:24535806 15:24491466 ARRIBA other 3 0 medium [],duplication PWRN1 NA PWRN3 PWRN1 NA NA NA NA NA -PWRN4--AC021439.1 BS_37GTVG4N 8.71968064876277 NA NA NA differentially expressed NA NA NA 15:23979211 15:23935211 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.03Mb],LOCAL_REARRANGEMENT:+:[33456]],duplication PWRN4 NA AC021439.1 NA NA NA NA NA NA -PWRN4--AC021439.1 BS_JTMXAMB7 11.7080086091032 NA NA NA differentially expressed NA NA NA 15:23979211 15:23941697 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr15:0.03Mb],LOCAL_REARRANGEMENT:+:[33456]],duplication PWRN4 NA AC021439.1 NA NA NA NA NA NA -PWRN4--AC021439.1 BS_N4B1SZZH 15.3507732941654 NA NA NA differentially expressed NA NA NA 15:23979211 15:23941697 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.03Mb],LOCAL_REARRANGEMENT:+:[33456]],duplication PWRN4 NA AC021439.1 NA NA NA NA NA NA -PWWP2AP1--SPRY2(19605)/RNU6-61P(8870) BS_ZRM0W01M 2.13562879097058 1.10351026524469 NA NA differentially expressed no change NA NA 13:80657039 13:80360556 ARRIBA other 2 1 medium [],duplication PWWP2AP1 NA SPRY2 RNU6-61P NA TumorSuppressorGene NA NA NA -PWWP2AP1--SPRY2(20650)/RNU6-61P(7825) BS_478TN841 0.460125686610263 0.685314457597445 NA NA no change no change NA NA 13:80657039 13:80361601 ARRIBA other 1 1 medium [],duplication PWWP2AP1 NA SPRY2 RNU6-61P NA TumorSuppressorGene NA NA NA -PWWP2AP1--SPRY2(20650)/RNU6-61P(7825) BS_N6NE6B3W 7.01465137056666 0.974582154666823 NA NA differentially expressed no change NA NA 13:80657039 13:80361601 ARRIBA other 7 0 medium [],duplication PWWP2AP1 NA SPRY2 RNU6-61P NA TumorSuppressorGene NA NA NA -PWWP2AP1--SPRY2(20650)/RNU6-61P(7825) BS_NZ71XCG3 4.66006124050243 -1.25312437402317 NA NA differentially expressed no change NA NA 13:80657039 13:80361601 ARRIBA other 2 1 medium [],duplication PWWP2AP1 NA SPRY2 RNU6-61P NA TumorSuppressorGene NA NA NA -PXDNL--PCMTD1 BS_TGS109T3 3.75499478412447 1.77457145761521 NA NA differentially expressed no change NA NA 8:51499699 8:51833689 ARRIBA in-frame 1 1 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.01Mb],LOCAL_REARRANGEMENT:-:[8130]],duplication PXDNL NA PCMTD1 NA NA NA NA NA NA -PXK--PRICKLE2 BS_FAQQ0GCQ -1.77002512851472 2.2423793339573 NA NA no change differentially expressed NA NA 3:58333090 3:64198967 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr3:5.67Mb]],inversion PXK NA PRICKLE2 NA NA NA NA NA NA -PXYLP1--XRN1 BS_FAQQ0GCQ 3.3065798555765 2.414354525025 NA NA differentially expressed differentially expressed NA NA 3:141231911 3:142355496 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr3:0.94Mb]],inversion PXYLP1 NA XRN1 NA NA NA NA NA NA -PXYLP1--XRN1 BS_FAQQ0GCQ 3.3065798555765 2.414354525025 NA NA differentially expressed differentially expressed NA NA 3:141232435 3:142355496 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:0.94Mb]],inversion PXYLP1 NA XRN1 NA NA NA NA NA NA -QKI--AL355297.4 BS_HC44ZA0V 1.44951069778525 NA NA NA no change NA NA NA 6:163455421 6:156776862 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr6:6.64Mb]],duplication/5'-5' QKI NA AL355297.4 NA TumorSuppressorGene, CosmicCensus NA NA NA NA -QKI--ARID1B BS_3F4FQJMR 1.34819836433665 1.97350769543857 NA NA no change no change NA NA 6:163455421 6:156829227 ARRIBA in-frame 23 2 high [INTRACHROMOSOMAL[chr6:6.20Mb]],duplication QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA -QKI--ARID1B BS_3F4FQJMR 1.34819836433665 1.97350769543857 NA NA no change no change NA NA 6:163457551 6:156829227 ARRIBA other 4 2 high [INTRACHROMOSOMAL[chr6:6.20Mb]],duplication QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA -QKI--ARID1B BS_HC44ZA0V 1.44951069778525 3.16947653293838 NA NA no change differentially expressed NA NA 6:163455421 6:156829227 ARRIBA in-frame 30 4 high [INTRACHROMOSOMAL[chr6:6.20Mb]],duplication QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA -QKI--ARID1B BS_HC44ZA0V 1.44951069778525 3.16947653293838 NA NA no change differentially expressed NA NA 6:163457551 6:156829227 ARRIBA in-frame 14 4 high [INTRACHROMOSOMAL[chr6:6.20Mb]],duplication QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA -QKI--C6orf58 BS_W4HGV6E7 2.1446437561174 12.5106587201147 NA NA differentially expressed differentially expressed NA NA 6:163535125 6:127578686 ARRIBA frameshift 24 4 medium [INTRACHROMOSOMAL[chr6:35.82Mb]],duplication QKI NA C6orf58 NA TumorSuppressorGene, CosmicCensus NA NA NA NA -QKI--C6orf58 BS_W4HGV6E7 2.1446437561174 12.5106587201147 NA NA differentially expressed differentially expressed NA NA 6:163535125 6:127570753 ARRIBA frameshift 4 4 medium [INTRACHROMOSOMAL[chr6:35.82Mb]],duplication QKI NA C6orf58 NA TumorSuppressorGene, CosmicCensus NA NA NA NA -QKI--C6orf58 BS_W4HGV6E7 2.1446437561174 12.5106587201147 NA NA differentially expressed differentially expressed NA NA 6:163535125 6:127590087 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr6:35.82Mb]],duplication QKI NA C6orf58 NA TumorSuppressorGene, CosmicCensus NA NA NA NA -QKI--C6orf58(31471)/AL592291.1(9670) BS_W4HGV6E7 2.1446437561174 12.5106587201147 NA NA differentially expressed differentially expressed NA NA 6:163535125 6:127623288 ARRIBA frameshift 19 3 medium [],duplication QKI NA C6orf58 AL592291.1 TumorSuppressorGene, CosmicCensus NA NA NA NA -QKI--C6orf58(31471)/AL592291.1(9670) BS_W4HGV6E7 2.1446437561174 12.5106587201147 NA NA differentially expressed differentially expressed NA NA 6:163535125 6:127623288 ARRIBA frameshift 3 2 medium [],duplication QKI NA C6orf58 AL592291.1 TumorSuppressorGene, CosmicCensus NA NA NA NA -QKI--CDC5L BS_E1CGF3KV 2.71196805791191 4.53394714156923 NA NA differentially expressed differentially expressed NA NA 6:163535125 6:44445655 ARRIBA in-frame 189 5 high [INTRACHROMOSOMAL[chr6:118.96Mb]],duplication QKI NA CDC5L NA TumorSuppressorGene, CosmicCensus TranscriptionFactor NA NA NA -QKI--LPA BS_1HQ76V6D 0.983216698209454 24.2849223355613 NA NA no change differentially expressed NA NA 6:163535125 6:160650497 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:2.75Mb]],inversion QKI NA LPA NA TumorSuppressorGene, CosmicCensus NA NA NA NA -QRICH1--DNAH1 BS_6JHXXVR7 1.66183760081527 -2.07633080507687 NA NA no change differentially expressed NA NA 3:49033230 3:52398331 ARRIBA other 44 8 medium [INTRACHROMOSOMAL[chr3:3.22Mb]],duplication/5'-5' QRICH1 NA DNAH1 NA NA NA NA NA NA -QRICH1--DNAH1 BS_KE56MMY0 1.61783090119546 -1.79963668886632 NA NA no change no change NA NA 3:49033230 3:52398331 ARRIBA other 16 1 medium [INTRACHROMOSOMAL[chr3:3.22Mb]],duplication/5'-5' QRICH1 NA DNAH1 NA NA NA NA NA NA -R3HDM2--AC084033.2(18677)/LINC02403(84454) BS_TK84K675 0.0900108173954063 NA NA NA no change NA NA NA 12:57303176 12:58003438 ARRIBA frameshift 32 11 high [],duplication R3HDM2 NA AC084033.2 LINC02403 NA NA NA NA NA -R3HDM2--AC084033.3 BS_TK84K675 0.0900108173954063 NA NA NA no change NA NA NA 12:57303176 12:57935553 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr12:0.50Mb]],duplication R3HDM2 NA AC084033.3 NA NA NA NA NA NA -R3HDM2--AC084033.3 BS_TK84K675 0.0900108173954063 NA NA NA no change NA NA NA 12:57310264 12:57935553 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr12:0.50Mb]],duplication R3HDM2 NA AC084033.3 NA NA NA NA NA NA -R3HDM2--AVIL BS_B1C6GZ84 0.621467696857277 0.241397835097718 NA NA no change no change NA NA 12:57430720 12:57816059 ARRIBA other 9 0 high [INTRACHROMOSOMAL[chr12:0.37Mb]],duplication R3HDM2 NA AVIL NA NA NA NA NA TCGAFusion -R3HDM2--GRIP1 BS_7327SDAQ 1.46014597845819 5.15020781538499 NA NA no change differentially expressed NA NA 12:57395749 12:66406428 ARRIBA other 63 7 high [INTRACHROMOSOMAL[chr12:8.92Mb]],duplication R3HDM2 NA GRIP1 NA NA NA NA NA NA -R3HDM2--GRIP1 BS_7327SDAQ 1.46014597845819 5.15020781538499 NA NA no change differentially expressed NA NA 12:57430720 12:66406428 ARRIBA other 21 4 high [INTRACHROMOSOMAL[chr12:8.92Mb]],duplication R3HDM2 NA GRIP1 NA NA NA NA NA NA -R3HDM2--GRIP1 BS_7327SDAQ 1.46014597845819 5.15020781538499 NA NA no change differentially expressed NA NA 12:57395749 12:66379436 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr12:8.92Mb]],duplication R3HDM2 NA GRIP1 NA NA NA NA NA NA -R3HDM2--GRIP1 BS_7327SDAQ 1.46014597845819 5.15020781538499 NA NA no change differentially expressed NA NA 12:57430720 12:66379436 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr12:8.92Mb]],duplication R3HDM2 NA GRIP1 NA NA NA NA NA NA -R3HDM2--PDE3A BS_SD8YBRBR 0.630543141110464 8.5173515535024 NA NA no change differentially expressed NA NA 12:57395749 12:20613443 ARRIBA other 84 6 high [INTRACHROMOSOMAL[chr12:36.57Mb]],inversion R3HDM2 NA PDE3A NA NA NA NA NA NA -R3HDM2--PDE3A BS_SD8YBRBR 0.630543141110464 8.5173515535024 NA NA no change differentially expressed NA NA 12:57430720 12:20613443 ARRIBA other 12 0 medium [INTRACHROMOSOMAL[chr12:36.57Mb]],inversion R3HDM2 NA PDE3A NA NA NA NA NA NA -R3HDM2--SLC4A8 BS_SFRQXM76 -2.1508892688603 -0.566425451381829 NA NA differentially expressed no change NA NA 12:57303176 12:51475374 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr12:5.74Mb]],deletion/5'-5' R3HDM2 NA SLC4A8 NA NA NA NA NA NA -RAB11FIP3--RHBDF1 BS_8F9BDWY4 -0.473561364480423 0.73557296134581 NA NA no change no change NA NA 16:519891 16:74380 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr16:0.35Mb]],duplication/5'-5' RAB11FIP3 NA RHBDF1 NA NA NA NA NA NA -RAB30--AP001189.4 BS_C05FKR8X 0.937896295486588 -0.287163806532307 NA NA no change no change NA NA 11:83071691 11:76702972 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr11:6.27Mb]],inversion RAB30 NA AP001189.4 NA NA NA NA NA NA -RAB31--CBLB(243129)/AC079382.1(213056) BS_QEYPFYHD -2.83366716942863 1.39592491850641 NA NA differentially expressed no change NA NA 18:9862247 3:106112681 ARRIBA other 3 0 medium [],translocation RAB31 NA CBLB AC079382.1 NA CosmicCensus, Oncogene NA NA NA -RAB31--CBLB(243129)/AC079382.1(213056) BS_Z7PKVY9J -2.28861483846016 1.01669083730249 NA NA differentially expressed no change NA NA 18:9862247 3:106112681 ARRIBA other 3 0 medium [],translocation RAB31 NA CBLB AC079382.1 NA CosmicCensus, Oncogene NA NA NA -RAB31--SMCHD1 BS_RB2S0KDF 0.0368847284034723 1.36682892247342 NA NA no change no change NA NA 18:9722863 18:2743761 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr18:6.90Mb]],duplication RAB31 NA SMCHD1 NA NA TumorSuppressorGene NA NA NA -RAB37--AC125421.2(4310)/AC137735.1(54420) BS_063ERW0R 0.00651717932932374 NA NA NA no change NA NA NA 17:74671658 17:73840329 ARRIBA frameshift 8 0 high [],duplication RAB37 NA AC125421.2 AC137735.1 NA NA NA NA NA -RAB38--CNTN5 BS_07ANYSYQ 3.24563160730177 2.55786931676646 NA NA differentially expressed differentially expressed NA NA 11:88175183 11:100191126 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr11:10.85Mb]],inversion RAB38 NA CNTN5 NA NA NA NA NA NA -RAB3GAP2--PLCH2 BS_A14Z8BBK 2.21648720638974 1.80640909936668 NA NA differentially expressed no change NA NA 1:220232799 1:2430338 ARRIBA in-frame 11 0 high [INTRACHROMOSOMAL[chr1:217.64Mb]],inversion RAB3GAP2 NA PLCH2 NA NA Oncogene NA NA NA -RAB3IP--LINC02392(293229)/AC084365.1(24190) BS_Q9V7A95C 3.86604576243911 NA NA NA differentially expressed NA NA NA 12:69756663 12:90593569 ARRIBA frameshift 45 1 high [],deletion RAB3IP NA LINC02392 AC084365.1 NA NA NA NA NA -RAB40A--RAB40A(11408)/TCEAL4(45334) BS_M15PW2N0 0.910083205718631 0.910083205718631 NA -1.88672176761438 no change no change NA no change X:103517374 X:103530897 ARRIBA other 2 1 medium [],duplication RAB40A NA RAB40A TCEAL4 NA NA NA NA NA -RAB40A--RAB40A(35622)/TCEAL4(21120) BS_28CDASF7 5.82165645326837 5.82165645326837 NA 3.27725094926622 differentially expressed differentially expressed NA differentially expressed X:103517374 X:103555111 ARRIBA other 1 2 high [],duplication RAB40A NA RAB40A TCEAL4 NA NA NA NA NA -RAB40C--AL117348.2 BS_6P50QTPP -1.58748213385542 NA NA NA no change NA NA NA 16:614964 1:225924206 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr16--chr1]],translocation RAB40C NA AL117348.2 NA NA NA NA NA NA -RAB40C--PYCR2 BS_6P50QTPP -1.58748213385542 0.930904782479919 NA NA no change no change NA NA 16:614964 1:225924206 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr16--chr1]],translocation RAB40C NA PYCR2 NA NA NA NA NA NA -RAB4A(7866)/AL117350.1(5643)--RAB4A BS_9NJHQE9F 1.08614220900337 1.08614220900337 NA NA no change no change NA NA 1:229313760 1:229286486 ARRIBA other 5 0 medium [],duplication RAB4A AL117350.1 RAB4A NA NA NA NA NA NA -RAB4A(7866)/AL117350.1(5643)--RAB4A BS_CZ3ER8DY -0.667818225541765 -0.667818225541765 NA NA no change no change NA NA 1:229313760 1:229286486 ARRIBA other 4 0 medium [],duplication RAB4A AL117350.1 RAB4A NA NA NA NA NA NA -RAB6A--AP001372.2 BS_37GTVG4N 0.618212960812327 0.0749066419043218 NA NA no change no change NA NA 11:73716251 11:74498069 ARRIBA frameshift 53 6 high [INTRACHROMOSOMAL[chr11:0.73Mb]],duplication/5'-5' RAB6A NA AP001372.2 NA NA NA NA NA NA -RAB6A--AP003174.1(5504)/snoU13(21239) BS_7G42J2SK -1.27705940089731 NA NA NA no change NA NA NA 11:73716251 11:115605843 ARRIBA frameshift 1 0 low [],inversion RAB6A NA AP003174.1 snoU13 NA NA NA NA NA -RAB6A--LIPT2 BS_37GTVG4N 0.618212960812327 6.80895701447857 NA NA no change differentially expressed NA NA 11:73716251 11:74492364 ARRIBA frameshift 5 2 medium [INTRACHROMOSOMAL[chr11:0.73Mb]],duplication RAB6A NA LIPT2 NA NA NA NA NA NA -RAB6A--PIK3C2A BS_7G42J2SK -1.27705940089731 1.00773171400033 NA NA no change no change NA NA 11:73716251 11:17089271 ARRIBA frameshift 7 2 high [INTRACHROMOSOMAL[chr11:56.47Mb]],inversion/5'-5' RAB6A NA PIK3C2A NA NA Kinase NA NA NA -RAB6A--POLD3 BS_37GTVG4N 0.618212960812327 5.0329997770464 NA NA no change differentially expressed NA NA 11:73716251 11:74511224 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr11:0.83Mb]],duplication/5'-5' RAB6A NA POLD3 NA NA NA NA NA NA -RAB6A--SRF BS_PEP9NZXN 0.350725353087675 0.186931457963134 NA NA no change no change NA NA 11:73707420 6:43178838 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr11--chr6]],translocation/5'-5' RAB6A NA SRF NA NA TranscriptionFactor NA NA NA -RAB8A--CKM BS_1QXEC43H 1.24600620499223 -0.363065600469336 NA NA no change no change NA NA 19:16121810 19:45311920 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr19:29.17Mb]],inversion RAB8A NA CKM NA Oncogene NA NA NA NA -RAB8A--CKM BS_1QXEC43H 1.24600620499223 -0.363065600469336 NA NA no change no change NA NA 19:16121810 19:45307650 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr19:29.17Mb]],inversion RAB8A NA CKM NA Oncogene NA NA NA NA -RAB8A--PRKN BS_1D6PZNKN 4.98113878549812 NA NA NA differentially expressed NA NA NA 19:16125547 6:161930662 ARRIBA frameshift 11 0 high [INTERCHROMOSOMAL[chr19--chr6]],translocation RAB8A NA PRKN NA Oncogene NA NA NA NA -RAB8A--PRKN BS_1D6PZNKN 4.98113878549812 NA NA NA differentially expressed NA NA NA 19:16125547 6:161785908 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr19--chr6]],translocation RAB8A NA PRKN NA Oncogene NA NA NA NA -RABEP1--APBB1IP BS_6JHXXVR7 -0.334440298733512 3.18929398582228 NA NA no change differentially expressed NA NA 17:5308822 10:26533439 ARRIBA frameshift 106 6 high [INTERCHROMOSOMAL[chr17--chr10]],translocation RABEP1 NA APBB1IP NA CosmicCensus, Oncogene NA NA NA NA -RABEP1--APBB1IP BS_6JHXXVR7 -0.334440298733512 3.18929398582228 NA NA no change differentially expressed NA NA 17:5308822 10:26541582 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr17--chr10]],translocation RABEP1 NA APBB1IP NA CosmicCensus, Oncogene NA NA NA NA -RABEP1--APBB1IP BS_KE56MMY0 -0.597638570473982 2.8139882332999 NA NA no change differentially expressed NA NA 17:5308822 10:26533439 ARRIBA frameshift 34 2 high [INTERCHROMOSOMAL[chr17--chr10]],translocation RABEP1 NA APBB1IP NA CosmicCensus, Oncogene NA NA NA NA -RABGAP1L--ASH1L BS_W60RQAKK 0.296532351279467 2.87945751222729 NA NA no change differentially expressed NA NA 1:174394145 1:155415923 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr1:18.60Mb]],inversion RABGAP1L NA ASH1L NA Oncogene TranscriptionFactor NA NA NA -RABGAP1L--ASH1L BS_W60RQAKK 0.296532351279467 2.87945751222729 NA NA no change differentially expressed NA NA 1:174394145 1:155395553 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:18.60Mb]],inversion RABGAP1L NA ASH1L NA Oncogene TranscriptionFactor NA NA NA -RAD23B--AL157937.1(28923)/DMRTA1(203246) BS_FYRDYBMZ 1.02394024025455 NA NA 0.99407500186647 no change NA NA no change 9:107283695 9:22243595 ARRIBA frameshift 2 0 medium [],inversion RAD23B NA AL157937.1 DMRTA1 TumorSuppressorGene, Oncogene NA NA TranscriptionFactor NA -RAD52--B4GALNT3 BS_W644VEVE 0.476202672173778 9.84057173156904 NA NA no change differentially expressed NA NA 12:931220 12:483931 ARRIBA frameshift 18 1 high [INTRACHROMOSOMAL[chr12:0.35Mb]],deletion/5'-5' RAD52 NA B4GALNT3 NA Oncogene NA NA NA NA -RAD52--WNT5B(7859)/MIR3649(5213) BS_W644VEVE 0.476202672173778 7.93034064068299 NA NA no change differentially expressed NA NA 12:989809 12:1655102 ARRIBA other 21 0 high [],duplication RAD52 NA WNT5B MIR3649 Oncogene NA NA NA NA -RAD9A--LRRC4C BS_MT15SGJN -2.16522578099709 -0.517304174660276 NA NA differentially expressed no change NA NA 11:67321333 11:40782463 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr11:25.86Mb]],duplication/5'-5' RAD9A NA LRRC4C NA Oncogene NA NA NA NA -RAD9A--RELA BS_G63HYD6N -1.22080264942803 4.95228108716172 NA NA no change differentially expressed NA NA 11:67368534 11:65662351 ARRIBA other 10 0 medium [INTRACHROMOSOMAL[chr11:1.65Mb]],deletion/3'-3' RAD9A NA RELA NA Oncogene Oncogene, TranscriptionFactor NA NA NA -RAET1E-AS1--WTAP BS_TM9MH0RP 2.94630120766246 0.868056927129939 NA NA differentially expressed no change NA NA 6:149864382 6:159736258 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr6:9.81Mb]],deletion RAET1E-AS1 NA WTAP NA NA NA NA NA NA -RAF1--AC117434.1(127172)/MIR7977(273394) BS_FAQQ0GCQ -0.488977223175282 NA NA NA no change NA NA NA 3:12663813 3:176241709 ARRIBA other 27 1 high [],inversion RAF1 NA AC117434.1 MIR7977 Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -RAF1--DLGAP4 BS_401R3KV0 -0.173225368601259 0.251822704352114 NA NA no change no change NA NA 3:12618515 20:36403224 ARRIBA frameshift 18 3 high [INTERCHROMOSOMAL[chr3--chr20]],translocation/5'-5' RAF1 NA DLGAP4 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -RAF1--NUP210 BS_S5P8VTN5 0.414903822477344 3.12266423233602 NA NA no change differentially expressed NA NA 3:12663813 3:13399861 ARRIBA other 19 2 high [INTRACHROMOSOMAL[chr3:0.65Mb]],duplication RAF1 NA NUP210 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -RAF1--SEMA5A BS_KE56MMY0 1.02422490360032 1.4512300579863 NA NA no change no change NA NA 3:12663813 5:9337812 ARRIBA other 7 0 high [INTERCHROMOSOMAL[chr3--chr5]],translocation RAF1 NA SEMA5A NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -RAI1--ARHGAP44 BS_FCAKKZ20 2.82616491927527 -1.12056788920057 NA NA differentially expressed no change NA NA 17:17724159 17:12980058 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr17:4.69Mb]],duplication RAI1 NA ARHGAP44 NA NA NA NA NA NA -RAI1--EPN2 BS_FCAKKZ20 2.82616491927527 2.55193341070417 NA NA differentially expressed differentially expressed NA NA 17:17724159 17:19328711 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr17:1.40Mb]],deletion RAI1 NA EPN2 NA NA NA NA NA NA -RAI14--MARF1 BS_6JHXXVR7 4.27472933732184 NA NA NA differentially expressed NA NA NA 5:34686955 16:15621911 ARRIBA in-frame 16 3 high [INTERCHROMOSOMAL[chr5--chr16]],translocation RAI14 NA MARF1 NA NA NA NA NA NA -RAI14--MARF1 BS_6JHXXVR7 4.27472933732184 NA NA NA differentially expressed NA NA NA 5:34686955 16:15623123 ARRIBA frameshift 4 4 high [INTERCHROMOSOMAL[chr5--chr16]],translocation RAI14 NA MARF1 NA NA NA NA NA NA -RAI14--MARF1 BS_6JHXXVR7 4.27472933732184 NA NA NA differentially expressed NA NA NA 5:34686955 16:15623126 ARRIBA frameshift 1 4 high [INTERCHROMOSOMAL[chr5--chr16]],translocation RAI14 NA MARF1 NA NA NA NA NA NA -RAI14--MARF1 BS_6JHXXVR7 4.27472933732184 NA NA NA differentially expressed NA NA NA 5:34686955 16:15617535 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr5--chr16]],translocation RAI14 NA MARF1 NA NA NA NA NA NA -RAI14--MARF1 BS_6JHXXVR7 4.27472933732184 NA NA NA differentially expressed NA NA NA 5:34686955 16:15620531 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr5--chr16]],translocation RAI14 NA MARF1 NA NA NA NA NA NA -RALGAPA1--PI4KA BS_ZVZDDW2G -0.0627716838090541 -1.18673462061397 NA NA no change no change NA NA 14:35808730 22:20820611 ARRIBA frameshift 6 2 high [INTERCHROMOSOMAL[chr14--chr22]],translocation RALGAPA1 NA PI4KA NA NA Kinase NA NA NA -RALGAPA1--RALGAPA1 BS_EK5PCKY0 0.97081952216591 0.97081952216591 NA NA no change no change NA NA 14:35634574 14:35723264 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.27Mb]],duplication/non-canonical_splicing RALGAPA1 NA RALGAPA1 NA NA NA NA NA NA -RALGAPA2--AC092266.1(317410)/LSINCT5(133158) BS_1D6PZNKN 0.406085300548753 NA NA -0.462522614002291 no change NA NA no change 20:20712375 5:2579433 ARRIBA frameshift 3 1 high [],translocation RALGAPA2 NA AC092266.1 LSINCT5 NA NA NA NA NA -RALGAPA2--RALGAPA2 BS_ZZPBANDD 0.829657530195805 0.829657530195805 NA NA no change no change NA NA 20:20559465 20:20396731 ARRIBA other 2 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.32Mb]],inversion/5'-5' RALGAPA2 NA RALGAPA2 NA NA NA NA NA NA -RALGAPB--MANBAL(7316)/SRC(20109) BS_JXF8A2A6 1.06194552944399 -0.372940889810235 NA -1.90920747294508 no change no change NA no change 20:38554605 20:37324576 ARRIBA other 3 0 medium [],inversion RALGAPB NA MANBAL SRC NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA -RALGAPB--RALGAPB BS_CXVJK2FY 1.44012354551712 1.44012354551712 NA NA no change no change NA NA 20:38532859 20:38521497 ARRIBA in-frame 5 2 low [SELFIE,INTRACHROMOSOMAL[chr20:0.11Mb]],duplication/non-canonical_splicing RALGAPB NA RALGAPB NA NA NA NA NA NA -RALGAPB--RALGAPB BS_G63HYD6N 1.3328035913468 1.3328035913468 NA NA no change no change NA NA 20:38532859 20:38521497 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.11Mb]],duplication/non-canonical_splicing RALGAPB NA RALGAPB NA NA NA NA NA NA -RALGAPB--RALGAPB BS_NGHK9RZP 1.17858404519677 1.17858404519677 NA NA no change no change NA NA 20:38532859 20:38521497 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.11Mb]],duplication/non-canonical_splicing RALGAPB NA RALGAPB NA NA NA NA NA NA -RALGAPB--TPM3P2(11692)/PIGPP3(40134) BS_84XCR9GG 3.16703664415569 -0.0630542816626081 NA -0.076948776851106 differentially expressed no change NA no change 20:38558453 20:33925028 ARRIBA frameshift 8 0 high [],inversion RALGAPB NA TPM3P2 PIGPP3 NA NA NA NA NA -RALGDS--AL807752.7 BS_WCRKYV0T -1.04269698906069 NA NA NA no change NA NA NA 9:133100268 9:136984490 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr9:3.83Mb]],inversion RALGDS NA AL807752.7 NA CosmicCensus, Oncogene NA NA NA NA -RALGDS--LCNL1 BS_WCRKYV0T -1.04269698906069 -1.94366889962462 NA NA no change no change NA NA 9:133100268 9:136984490 ARRIBA frameshift 4 0 high [GTEx,INTRACHROMOSOMAL[chr9:3.83Mb]],inversion RALGDS NA LCNL1 NA CosmicCensus, Oncogene NA NA NA NA -RALGPS2--PRRX1 BS_KE56MMY0 4.82841267722288 5.40776757774277 NA NA differentially expressed differentially expressed NA NA 1:178725419 1:170719726 ARRIBA other 16 0 medium [INTRACHROMOSOMAL[chr1:7.99Mb]],duplication RALGPS2 NA PRRX1 NA Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -RALYL--AC015522.1 BS_3NWQXPQV 1.8402744359436 NA NA NA no change NA NA NA 8:84184424 8:83979925 ARRIBA other 3 1 low [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:+:[42504]],duplication RALYL NA AC015522.1 NA NA NA NA NA NA -RALYL--AC015522.1 BS_3NWQXPQV 1.8402744359436 NA NA NA no change NA NA NA 8:84185014 8:84084149 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:+:[42504]],duplication RALYL NA AC015522.1 NA NA NA NA NA NA -RALYL--AC015522.1 BS_3NWQXPQV 1.8402744359436 NA NA NA no change NA NA NA 8:84184424 8:84084149 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:+:[42504]],duplication RALYL NA AC015522.1 NA NA NA NA NA NA -RALYL--PVT1(18168)/MIR1208(30695) BS_D144EJRQ 0.858513771204222 0.246557674356344 NA NA no change no change NA NA 8:84185014 8:128119421 ARRIBA frameshift 2 0 medium [],inversion RALYL NA PVT1 MIR1208 NA Oncogene NA NA NA -RALYL--PVT1(48118)/MIR1208(745) BS_D144EJRQ 0.858513771204222 0.246557674356344 NA NA no change no change NA NA 8:84184424 8:128149371 ARRIBA other 21 0 high [],inversion RALYL NA PVT1 MIR1208 NA Oncogene NA NA NA -RALYL--SAMD12 BS_HZE3KYZ1 0.901874498047244 2.70975186089982 NA NA no change differentially expressed NA NA 8:84529577 8:118439961 ARRIBA frameshift 32 0 high [INTRACHROMOSOMAL[chr8:33.27Mb]],inversion RALYL NA SAMD12 NA NA NA NA NA NA -RALYL--SAMD12 BS_HZE3KYZ1 0.901874498047244 2.70975186089982 NA NA no change differentially expressed NA NA 8:84529577 8:118379700 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr8:33.27Mb]],inversion RALYL NA SAMD12 NA NA NA NA NA NA -RANBP2--LRRC49 BS_RSRPX3S8 1.37021259645773 0.108415046070821 NA NA no change no change NA NA 2:108753061 15:70982932 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr2--chr15]],translocation RANBP2 NA LRRC49 NA CosmicCensus, Oncogene NA NA NA NA -RANBP3--ZNF675 BS_1D6PZNKN 0.49549693378489 1.5947311326681 NA NA no change no change NA NA 19:5978061 19:23687090 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr19:17.55Mb]],inversion/5'-5' RANBP3 NA ZNF675 NA NA TranscriptionFactor NA NA NA -RAP1B--NT5DC3 BS_NJ4WPQVK 0.378408827552841 0.557521013728507 NA NA no change no change NA NA 12:68611043 12:103815121 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr12:35.10Mb]],inversion RAP1B NA NT5DC3 NA Oncogene NA NA NA NA -RAPGEF6--AC008695.1 BS_B741RZY9 1.03636567586009 NA NA NA no change NA NA NA 5:131439581 5:131548190 ARRIBA frameshift 3 0 medium [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA -RAPGEF6--AC008695.1 BS_B741RZY9 1.03636567586009 NA NA NA no change NA NA NA 5:131472587 5:131521521 ARRIBA frameshift 1 0 low [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA -RAPGEF6--AC008695.1 BS_B741RZY9 1.03636567586009 NA NA NA no change NA NA NA 5:131504626 5:131548190 ARRIBA in-frame 1 0 low [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA -RAPGEF6--AC008695.1 BS_R7HZCZ8B 1.20146859764369 NA NA NA no change NA NA NA 5:131489546 5:131521521 ARRIBA frameshift 4 0 medium [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA -RAPGEF6--AC008695.1 BS_R7HZCZ8B 1.20146859764369 NA NA NA no change NA NA NA 5:131504626 5:131521521 ARRIBA in-frame 1 0 low [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA -RAPGEF6--AC008695.1 BS_R7HZCZ8B 1.20146859764369 NA NA NA no change NA NA NA 5:131453054 5:131521521 ARRIBA frameshift 1 0 low [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA -RAPGEF6--AC008695.1 BS_R7HZCZ8B 1.20146859764369 NA NA NA no change NA NA NA 5:131521390 5:131548190 ARRIBA in-frame 1 0 low [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA -RAPGEF6--AC008695.1 BS_R7HZCZ8B 1.20146859764369 NA NA NA no change NA NA NA 5:131489546 5:131562047 ARRIBA frameshift 1 0 low [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA -RAPGEF6--AC008695.1 BS_R7HZCZ8B 1.20146859764369 NA NA NA no change NA NA NA 5:131592383 5:131604693 ARRIBA frameshift 1 0 low [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA -RAPGEF6--RAPGEF6 BS_B741RZY9 1.03636567586009 1.03636567586009 NA NA no change no change NA NA 5:131439581 5:131548190 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.21Mb]],duplication/non-canonical_splicing RAPGEF6 NA RAPGEF6 NA NA NA NA NA NA -RAPGEF6--RAPGEF6 BS_G9XE3N9T 1.67633413220946 1.67633413220946 NA NA no change no change NA NA 5:131489546 5:131521521 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.21Mb]],duplication/non-canonical_splicing RAPGEF6 NA RAPGEF6 NA NA NA NA NA NA -RAPGEF6--RAPGEF6 BS_R7HZCZ8B 1.20146859764369 1.20146859764369 NA NA no change no change NA NA 5:131489546 5:131521521 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.21Mb]],duplication/non-canonical_splicing RAPGEF6 NA RAPGEF6 NA NA NA NA NA NA -RAPGEF6--RXFP1 BS_NGHK9RZP -0.195752645565899 -0.754102984807543 NA NA no change no change NA NA 5:131634962 4:158599424 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr5--chr4]],translocation/5'-5' RAPGEF6 NA RXFP1 NA NA NA NA NA NA -RAPGEF6--SPOCK1 BS_51RA1PGE 0.302540915732187 0.135294350884374 NA NA no change no change NA NA 5:131521390 5:137441060 ARRIBA frameshift 7 2 high [INTRACHROMOSOMAL[chr5:5.34Mb]],inversion/5'-5' RAPGEF6 NA SPOCK1 NA NA NA NA NA NA -RASGRP3--RASGRP3 BS_RB2S0KDF 0.00284488211359761 0.00284488211359761 NA NA no change no change NA NA 2:33539556 2:33542811 ARRIBA other 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.13Mb]],inversion/3'-3' RASGRP3 NA RASGRP3 NA NA NA NA NA NA -RASSF8--AC069208.1 BS_YEQVW4ND 5.22358158322601 NA NA NA differentially expressed NA NA NA 12:25995130 12:24213417 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr12:1.40Mb]],inversion RASSF8 NA AC069208.1 NA TumorSuppressorGene NA NA NA NA -RASSF8--AC069208.1 BS_YEQVW4ND 5.22358158322601 NA NA NA differentially expressed NA NA NA 12:25959148 12:24213417 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:1.40Mb]],inversion RASSF8 NA AC069208.1 NA TumorSuppressorGene NA NA NA NA -RASSF8--SOX5-AS1 BS_YEQVW4ND 5.22358158322601 NA NA NA differentially expressed NA NA NA 12:25995130 12:24237822 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr12:1.72Mb]],duplication RASSF8 NA SOX5-AS1 NA TumorSuppressorGene NA NA NA NA -RASSF8--SOX5-AS1 BS_YEQVW4ND 5.22358158322601 NA NA NA differentially expressed NA NA NA 12:25959148 12:24237822 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:1.72Mb]],duplication RASSF8 NA SOX5-AS1 NA TumorSuppressorGene NA NA NA NA -RB1--LINC01881 BS_YEW22W35 0.0653831716591596 NA NA NA no change NA NA NA 13:48307406 2:242105126 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr13--chr2]],translocation/5'-5' RB1 NA LINC01881 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -RB1--SPATA2P1(430893)/RN7SKP6(237449) BS_K17VQECG 1.88589182772054 -0.0370460225569195 NA -0.0358677575541047 no change no change NA no change 13:48381443 13:56647835 ARRIBA frameshift 1 0 low [],deletion RB1 NA SPATA2P1 RN7SKP6 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -RBBP5--C1orf186 BS_3NWQXPQV 2.23154559254065 -0.265705785462165 NA NA differentially expressed no change NA NA 1:205114789 1:206039054 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.92Mb]],duplication/5'-5' RBBP5 NA C1orf186 NA Oncogene NA NA NA NA -RBBP9--LINC01747 BS_B61168DE 2.34547321704097 NA NA NA differentially expressed NA NA NA 20:18493958 20:22672008 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr20:4.17Mb]],duplication RBBP9 NA LINC01747 NA NA NA NA NA NA -RBBP9--LINC01747 BS_B61168DE 2.34547321704097 NA NA NA differentially expressed NA NA NA 20:18493958 20:22669520 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr20:4.17Mb]],duplication RBBP9 NA LINC01747 NA NA NA NA NA NA -RBFOX2--IGLC2 BS_1HQ76V6D 0.808927826290728 2.20294062728113 NA NA no change differentially expressed NA NA 22:36028240 22:22900976 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr22:12.84Mb]],inversion RBFOX2 NA IGLC2 NA NA NA NA NA NA -RBFOX2--OPCML BS_NB42PWZN 0.592444488490874 -0.530831412470435 NA NA no change no change NA NA 22:36028240 11:132943010 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr22--chr11]],translocation RBFOX2 NA OPCML NA NA TumorSuppressorGene, Oncogene NA NA NA -RBFOX2--OPCML BS_Z7890YNR 0.830062323366618 -0.631615750500058 NA NA no change no change NA NA 22:36028240 11:132943010 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr22--chr11]],translocation RBFOX2 NA OPCML NA NA TumorSuppressorGene, Oncogene NA NA NA -RBL2--AC002524.1(194123)/GLRA2(90247) BS_VJ2S5DVS 1.41744764470725 NA NA -1.21364886506901 no change NA NA no change 16:53462655 X:14439051 ARRIBA frameshift 11 1 high [],translocation RBL2 NA AC002524.1 GLRA2 TumorSuppressorGene, Oncogene NA NA NA NA -RBM25--SCHLAP1 BS_X2QTK3QD -0.889805378854984 16.5852608958756 NA NA no change differentially expressed NA NA 14:73088161 2:180827241 ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr14--chr2]],translocation RBM25 NA SCHLAP1 NA NA NA NA NA NA -RBM28--AUTS2 BS_TK84K675 2.00957334128172 2.42720986045879 NA NA differentially expressed differentially expressed NA NA 7:128343676 7:70118132 ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr7:57.50Mb]],inversion RBM28 NA AUTS2 NA NA NA NA NA NA -RBM28--TENM2 BS_TXZ7KHTQ 1.513831726498 1.56863545045784 NA NA no change no change NA NA 7:128333290 5:167859052 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr7--chr5]],translocation/5'-5' RBM28 NA TENM2 NA NA NA NA NA NA -RBM34--AL391645.1 BS_QWTE1CWR -1.32255521451965 NA NA NA no change NA NA NA 1:235160511 1:190487896 ARRIBA frameshift 13 1 high [INTRACHROMOSOMAL[chr1:44.64Mb]],deletion/5'-5' RBM34 NA AL391645.1 NA Oncogene NA NA NA NA -RBM34--AL391645.1 BS_WKESC3XN 0.444017071585245 NA NA NA no change NA NA NA 1:235160511 1:190487896 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr1:44.64Mb]],deletion/5'-5' RBM34 NA AL391645.1 NA Oncogene NA NA NA NA -RBM5--SUCLG2 BS_91VYM11A -0.926439252007122 0.36925047604763 NA NA no change no change NA NA 3:50104308 3:67614108 ARRIBA frameshift 2 0 high [INTRACHROMOSOMAL[chr3:17.24Mb]],deletion/5'-5' RBM5 NA SUCLG2 NA TumorSuppressorGene, Oncogene NA NA NA NA -RBMS3--AC068633.1(126104)/IGSF11(216785) BS_FAQQ0GCQ 3.36339966124749 NA NA 0.398668003404166 differentially expressed NA NA no change 3:29936196 3:118683772 ARRIBA frameshift 3 0 high [],inversion RBMS3 NA AC068633.1 IGSF11 TumorSuppressorGene NA NA NA NA -RBX1--AC009961.1 BS_1D6PZNKN -2.1054732458689 NA NA NA differentially expressed NA NA NA 22:40967884 2:159670813 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr22--chr2]],translocation RBX1 NA AC009961.1 NA Oncogene NA NA NA NA -RBX1--AC009961.1 BS_1D6PZNKN -2.1054732458689 NA NA NA differentially expressed NA NA NA 22:40967884 2:159670810 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr22--chr2]],translocation RBX1 NA AC009961.1 NA Oncogene NA NA NA NA -RCBTB1--C8orf34 BS_MV6ASWV9 1.21165010261941 -1.26291348331318 NA NA no change no change NA NA 13:49555515 8:68458440 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr13--chr8]],translocation/5'-5' RCBTB1 NA C8orf34 NA NA NA NA NA NA -RCL1(42395)/HNRNPA1P41(16358)--RCL1 BS_V3Z3DB4N 3.22611424350481 3.22611424350481 0.362829059775389 NA differentially expressed differentially expressed no change NA 9:4928312 9:4860125 ARRIBA other 3 0 medium [],duplication RCL1 HNRNPA1P41 RCL1 NA NA NA NA NA NA -RCN1--HIPK3 BS_49FQXT2E 2.22958974113722 4.10378842460816 NA NA differentially expressed differentially expressed NA NA 11:32103480 11:33299639 ARRIBA frameshift 22 1 high [INTRACHROMOSOMAL[chr11:1.15Mb]],inversion/3'-3' RCN1 NA HIPK3 NA NA Kinase, Kinase NA NA NA -RCN1--SF1 BS_H4NXBD2D 1.69201244437996 -0.741658428566321 NA NA no change no change NA NA 11:31814316 11:64773505 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr11:32.66Mb]],inversion RCN1 NA SF1 NA NA NA NA NA NA -RCN2--EMP1 BS_EBMCTR80 1.15922571367102 2.71523699162648 NA NA no change differentially expressed NA NA 15:76932466 12:13196810 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr15--chr12]],translocation RCN2 NA EMP1 NA NA TumorSuppressorGene, Oncogene NA NA NA -RCN3--FCGRT BS_1N9XZXGE 8.28342679294826 8.28049469314592 NA NA differentially expressed differentially expressed NA NA 19:49539179 19:49526010 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:+:[1285]],duplication RCN3 NA FCGRT NA NA NA NA NA NA -RCN3--FCGRT BS_1N9XZXGE 8.28342679294826 8.28049469314592 NA NA differentially expressed differentially expressed NA NA 19:49542752 19:49526010 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:+:[1285]],duplication RCN3 NA FCGRT NA NA NA NA NA NA -RCN3--FCGRT BS_B9V8RGTA 2.18269194039289 5.33769600834705 NA NA differentially expressed differentially expressed NA NA 19:49542752 19:49526010 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:+:[1285]],duplication RCN3 NA FCGRT NA NA NA NA NA NA -RCOR1--PTGR1 BS_J71N7D09 2.50968938092963 -0.422351599597939 NA NA differentially expressed no change NA NA 14:102677304 9:111574842 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr14--chr9]],translocation/3'-3' RCOR1 NA PTGR1 NA NA NA NA NA NA -RCOR2(3329)/NAA40(18786)--MARK2 BS_07ANYSYQ 3.7430698335233 1.18542617538333 0.119617615733516 NA differentially expressed no change no change NA 11:63920173 11:63910457 ARRIBA other 6 0 medium [],inversion RCOR2 NAA40 MARK2 NA NA Kinase, Kinase NA NA NA -RECK--SNRPD3 BS_AZN38B7V 3.77703808170719 0.303300575684859 NA NA differentially expressed no change NA NA 9:36037098 22:24567984 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr9--chr22]],translocation RECK NA SNRPD3 NA TumorSuppressorGene NA NA NA NA -REEP1--RGS9 BS_8SKZ7BRN -0.448120108924514 -0.127743831514261 NA NA no change no change NA NA 2:86232625 17:65153422 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr2--chr17]],translocation REEP1 NA RGS9 NA NA NA NA NA NA -REEP1--TTLL4 BS_RRAEQZ97 -0.179918362804837 -0.129134144763177 NA NA no change no change NA NA 2:86251957 2:218737838 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr2:132.37Mb]],duplication/5'-5' REEP1 NA TTLL4 NA NA NA NA NA NA -RELA--AP001994.1(150794)/AP001360.1(15031) BS_7G42J2SK 4.35949074949949 NA NA NA differentially expressed NA NA NA 11:65658287 11:119972923 ARRIBA frameshift 26 2 high [],inversion RELA NA AP001994.1 AP001360.1 Oncogene, TranscriptionFactor NA NA NA NA -RELA--C11orf95 BS_4NWHYH53 3.8942299264604 4.53828300732576 NA NA differentially expressed differentially expressed NA NA 11:65661937 11:63766032 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],deletion RELA NA C11orf95 NA Oncogene, TranscriptionFactor NA NA NA NA -RELA--MACROD1 BS_G63HYD6N 4.95228108716172 0.350245059669162 NA NA differentially expressed no change NA NA 11:65662826 11:64015281 ARRIBA in-frame 46 0 medium [INTRACHROMOSOMAL[chr11:1.49Mb]],deletion RELA NA MACROD1 NA Oncogene, TranscriptionFactor Oncogene NA NA NA -RELT--AP005233.1(3159)/AP000439.3(5699) BS_TRKH2SPE 0.0727907825426898 NA NA 18.4216868553219 no change NA NA differentially expressed 11:73376499 11:69419991 ARRIBA other 2 0 medium [],inversion RELT NA AP005233.1 AP000439.3 NA NA NA NA NA -RER1--ADAMTS17 BS_49FQXT2E 0.445898975096057 3.56749880512848 NA NA no change differentially expressed NA NA 1:2397220 15:100281401 ARRIBA frameshift 13 1 high [INTERCHROMOSOMAL[chr1--chr15]],translocation RER1 NA ADAMTS17 NA NA NA NA NA NA -RER1--ADAMTS17 BS_49FQXT2E 0.445898975096057 3.56749880512848 NA NA no change differentially expressed NA NA 1:2395871 15:100281401 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr1--chr15]],translocation RER1 NA ADAMTS17 NA NA NA NA NA NA -REV3L--FYN BS_H8A9PSYA 1.66834709856344 3.82628071687816 NA NA no change differentially expressed NA NA 6:111482750 6:111674630 ARRIBA in-frame 2 0 low [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion -RFTN1--IQSEC1 BS_C41DJZ1F 2.19807453921503 1.12834510710851 NA NA differentially expressed no change NA NA 3:16433851 3:12941865 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr3:3.24Mb]],deletion RFTN1 NA IQSEC1 NA NA NA NA NA NA -RFTN2--TCF7L1 BS_RRAEQZ97 2.03372593702581 0.151957087121097 NA NA differentially expressed no change NA NA 2:197615876 2:85302484 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:112.26Mb]],inversion RFTN2 NA TCF7L1 NA NA TranscriptionFactor NA NA NA -RFX3--RFX3 BS_7BTZQKYY 7.65025136575417 7.65025136575417 NA NA differentially expressed differentially expressed NA NA 9:3262935 9:3293258 ARRIBA in-frame 23 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.31Mb]],duplication/non-canonical_splicing RFX3 NA RFX3 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_0T17SY47 0.745857653213462 0.745857653213462 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_0WVJYM9R 1.83957833862769 1.83957833862769 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_258RRGDM 2.26314108904831 2.26314108904831 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_2ADZNNV4 2.00950541526478 2.00950541526478 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_2SFTWNVE -0.625274441864876 -0.625274441864876 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_2XD3MNKD 0.109390279491876 0.109390279491876 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_34201DKZ 2.52381896892499 2.52381896892499 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 21 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_42DY6WS7 0.441710852488503 0.441710852488503 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_49BQS7Z6 2.89565935091024 2.89565935091024 NA NA differentially expressed differentially expressed NA NA 12:106750793 12:106686884 ARRIBA frameshift 8 4 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_4NWHYH53 2.25122929841478 2.25122929841478 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 15 3 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_4T0HPZDC 1.97217394040481 1.97217394040481 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_53M8PP88 2.89471159922227 2.89471159922227 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA in-frame 10 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_5NWDARXG 1.52170464120797 1.52170464120797 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_5PEFNDCY 1.39666693938505 1.39666693938505 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 31 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_6MY8W3H0 0.35981163418789 0.35981163418789 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_6MZ7FRZH 2.27731564132531 2.27731564132531 NA NA differentially expressed differentially expressed NA NA 12:106750793 12:106686884 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_7BTZQKYY 2.1137877788009 2.1137877788009 NA NA differentially expressed differentially expressed NA NA 12:106750793 12:106686884 ARRIBA frameshift 30 4 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_8RHPJ740 2.07462736504472 2.07462736504472 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_8ZP3CBQA 3.24991915571252 3.24991915571252 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 25 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_9DZ253JY -0.580181964284706 -0.580181964284706 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_AG3D3435 1.74775160032409 1.74775160032409 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_AGTPCRR4 2.88901290743377 2.88901290743377 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_B6M763JS -0.362160799744141 -0.362160799744141 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_B741RZY9 0.966518255434 0.966518255434 NA NA no change no change NA NA 12:106750793 12:106686884 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_BJDNWMJH 2.06979653086977 2.06979653086977 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_CTR5X93B 0.695873615535818 0.695873615535818 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_CZ3ER8DY 1.49157160685246 1.49157160685246 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_DRD9QXR5 0.396570148927346 0.396570148927346 NA NA no change no change NA NA 12:106750793 12:106686884 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_DS438CXE 3.08147123455164 3.08147123455164 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 18 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_E4F1D721 2.52862694750378 2.52862694750378 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 26 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_EF775B3K 1.56471919559032 1.56471919559032 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_EHVYJAVA 1.2938097880149 1.2938097880149 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_EK5PCKY0 1.99772430049518 1.99772430049518 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_ERJAJ0KA 1.24794411040682 1.24794411040682 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_ET8CJXSF 1.40823487605862 1.40823487605862 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_F6Z5HFWH 0.26305706762623 0.26305706762623 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_FAVRBEW7 -0.224282284304868 -0.224282284304868 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_G9XE3N9T 1.97788824635969 1.97788824635969 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_GMDQK06Q 2.01619756000224 2.01619756000224 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_H0QWRJE2 3.57815999212234 3.57815999212234 NA NA differentially expressed differentially expressed NA NA 12:106750793 12:106686884 ARRIBA frameshift 26 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_HV8PFRBR 2.07730468106479 2.07730468106479 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_HZ707C55 2.73544433584819 2.73544433584819 NA NA differentially expressed differentially expressed NA NA 12:106750793 12:106686884 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_JRYJGYC4 1.63315130670126 1.63315130670126 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_JX7S9MY7 0.720425877778094 0.720425877778094 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_K5802F84 -0.236106981031555 -0.236106981031555 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_KEA474HN 1.17410928998228 1.17410928998228 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_KXMYBQ6N 1.30616690410226 1.30616690410226 NA NA no change no change NA NA 12:106750793 12:106686884 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_KZPR01BD 1.78371515170999 1.78371515170999 NA NA no change no change NA NA 12:106750793 12:106686884 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_ME3HKN2C 1.86738639858151 1.86738639858151 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_MF9X3PKH 0.910824508726124 0.910824508726124 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_MKP2Y41Z 2.59595358633295 2.59595358633295 NA NA differentially expressed differentially expressed NA NA 12:106750793 12:106686884 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_MY9D8XZ1 1.25885856783573 1.25885856783573 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_N5DVEJXT 2.29648059404909 2.29648059404909 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_N6NE6B3W 0.172693479456928 0.172693479456928 NA NA no change no change NA NA 12:106689364 12:106686884 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_N8J1DP02 1.92509618456065 1.92509618456065 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA in-frame 24 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_NB5XWMJT 1.73779703421555 1.73779703421555 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_NRPG5K4K 1.65296566173785 1.65296566173785 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 20 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_NYS8TRCB 1.54750560444767 1.54750560444767 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_P78SMRBS 3.68413668857824 3.68413668857824 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 23 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_QNAQGAV6 1.52705176886828 1.52705176886828 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_QSTAVWGE 2.42225309122851 2.42225309122851 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 22 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_QTSXW7DA 1.12154059469909 1.12154059469909 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_S6NJRR5W 2.20017713562991 2.20017713562991 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_SAA624A4 0.150644704040934 0.150644704040934 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 44 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_SDA4RMMG 2.80561563290321 2.80561563290321 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 18 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_SFKZSJN1 2.04158684177372 2.04158684177372 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_SXCZ3CXN 2.39937943656192 2.39937943656192 NA NA differentially expressed differentially expressed NA NA 12:106750793 12:106686884 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_T55Y4Z0Y 1.91265418754897 1.91265418754897 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_TNRHHYNC 1.91146401870931 1.91146401870931 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 30 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_VNK9XYV9 -0.301564809287849 -0.301564809287849 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_W18SF91A 2.10066808627053 2.10066808627053 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_W4HGV6E7 2.58210152262184 2.58210152262184 NA NA differentially expressed differentially expressed NA NA 12:106654351 12:106608797 ARRIBA frameshift 29 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_W7FP2G3F 0.769637987785003 0.769637987785003 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_WFD0GE5X 3.22431901768294 3.22431901768294 NA NA differentially expressed differentially expressed NA NA 12:106750793 12:106686884 ARRIBA frameshift 23 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_X16PENSA 1.20631761767036 1.20631761767036 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_X67GTEM6 2.86310673645846 2.86310673645846 NA NA differentially expressed differentially expressed NA NA 12:106750793 12:106686884 ARRIBA frameshift 8 4 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_YB2RXRHT 0.762167683836575 0.762167683836575 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_Z2NWPQKF 1.50168107271341 1.50168107271341 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RFX4--RFX4 BS_Z85M2R3N 1.89650941286259 1.89650941286259 NA NA no change no change NA NA 12:106654351 12:106608797 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -RGS18--RGS18(53975)/AL513175.1(6918) BS_7BTZQKYY 1.45993166117681 1.45993166117681 NA NA no change no change NA NA 1:192184353 1:192239790 ARRIBA other 3 0 medium [],duplication RGS18 NA RGS18 AL513175.1 NA NA NA NA NA -RGS22--RGS22 BS_81SP2HX4 2.45321985352641 2.45321985352641 NA NA differentially expressed differentially expressed NA NA 8:99996462 8:100080355 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.17Mb]],duplication/non-canonical_splicing RGS22 NA RGS22 NA NA NA NA NA NA -RGS22--RGS22 BS_8S86CM61 4.14875218556392 4.14875218556392 NA NA differentially expressed differentially expressed NA NA 8:99996462 8:100080355 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.17Mb]],duplication/non-canonical_splicing RGS22 NA RGS22 NA NA NA NA NA NA -RGS7--RGS7 BS_0T17SY47 -1.12148311880205 -1.12148311880205 NA NA no change no change NA NA 1:240868587 1:240936706 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing RGS7 NA RGS7 NA CosmicCensus CosmicCensus NA NA NA -RGS7--RGS7 BS_2XD3MNKD -1.39566455997908 -1.39566455997908 NA NA no change no change NA NA 1:240868587 1:240936706 ARRIBA frameshift 15 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing RGS7 NA RGS7 NA CosmicCensus CosmicCensus NA NA NA -RGS7--RGS7 BS_WCRKYV0T 0.354547220838591 0.354547220838591 NA NA no change no change NA NA 1:240868587 1:240936706 ARRIBA frameshift 14 5 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing RGS7 NA RGS7 NA CosmicCensus CosmicCensus NA NA NA -RGS9--REEP1 BS_8SKZ7BRN -0.127743831514261 -0.448120108924514 NA NA no change no change NA NA 17:65137597 2:86217110 ARRIBA frameshift 7 1 high [INTERCHROMOSOMAL[chr17--chr2]],translocation RGS9 NA REEP1 NA NA NA NA NA NA -RGS9--RGS9 BS_3MS8WVNR 0.417413674419354 0.417413674419354 NA NA no change no change NA NA 17:65210605 17:65189286 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing RGS9 NA RGS9 NA NA NA NA NA NA -RHBDD1--AC010735.2 BS_V96WVE3Z 6.58770404649194 NA NA NA differentially expressed NA NA NA 2:226942578 2:226807486 ARRIBA frameshift 2 2 high [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:+:[24552]],duplication RHBDD1 NA AC010735.2 NA NA NA NA NA NA -RHBDD1--AC010735.2 BS_V96WVE3Z 6.58770404649194 NA NA NA differentially expressed NA NA NA 2:226867318 2:226807486 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:+:[24552]],duplication RHBDD1 NA AC010735.2 NA NA NA NA NA NA -RHBDD1--AC016717.2(25576)/AC016717.3(32329) BS_H0QWRJE2 7.64869649524547 NA NA NA differentially expressed NA NA NA 2:226914351 2:225729230 ARRIBA frameshift 3 0 medium [],duplication RHBDD1 NA AC016717.2 AC016717.3 NA NA NA NA NA -RHBDD1--AC016717.2(25576)/AC016717.3(32329) BS_TJTEF70D 7.78898828972282 NA NA NA differentially expressed NA NA NA 2:226914351 2:225729230 ARRIBA frameshift 3 1 high [],duplication RHBDD1 NA AC016717.2 AC016717.3 NA NA NA NA NA -RHBDD1--AC025475.1(227945)/AC113347.1(41582) BS_H0QWRJE2 7.64869649524547 NA NA NA differentially expressed NA NA NA 2:226914351 5:26627764 ARRIBA frameshift 3 0 high [],translocation RHBDD1 NA AC025475.1 AC113347.1 NA NA NA NA NA -RHBDD1--LINC00607 BS_81SP2HX4 9.60260295770969 8.49114174982115 NA NA differentially expressed differentially expressed NA NA 2:226867318 2:215624235 ARRIBA frameshift 2 6 medium [INTRACHROMOSOMAL[chr2:10.99Mb]],inversion RHBDD1 NA LINC00607 NA NA NA NA NA NA -RHBDD1--LYN BS_TJTEF70D 7.78898828972282 0.288641023495184 NA NA differentially expressed no change NA NA 2:226914351 8:55934657 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr2--chr8]],translocation/5'-5' RHBDD1 NA LYN NA NA Kinase, Oncogene, Kinase NA NA NA -RHOA--AC048334.1(26339)/LINC02042(12402) BS_6JHXXVR7 0.740294645944937 NA NA NA no change NA NA NA 3:49411820 3:112724045 ARRIBA other 3 0 medium [],inversion RHOA NA AC048334.1 LINC02042 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -RHOA--CD200R1 BS_6JHXXVR7 0.740294645944937 0.0932509007031669 NA NA no change no change NA NA 3:49411820 3:112965091 ARRIBA other 11 2 medium [INTRACHROMOSOMAL[chr3:63.51Mb]],inversion/5'-5' RHOA NA CD200R1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -RHOA--CD200R1 BS_KE56MMY0 1.00698243061259 4.23300843919461 NA NA no change differentially expressed NA NA 3:49411820 3:112965091 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr3:63.51Mb]],inversion/5'-5' RHOA NA CD200R1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -RHOA--LINC02042(7136)/AC092892.1(46023) BS_6JHXXVR7 0.740294645944937 NA NA NA no change NA NA NA 3:49411820 3:112756455 ARRIBA other 3 1 medium [],inversion RHOA NA LINC02042 AC092892.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -RHOT1--SLC6A4 BS_E4QK839R -2.33968842918295 3.88200467695963 NA NA differentially expressed differentially expressed NA NA 17:32142729 17:30222081 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr17:1.91Mb]],inversion RHOT1 NA SLC6A4 NA NA NA NA NA NA -RHPN2--CCDC124 BS_MBSTWZA6 1.72712232624678 0.0467636276030492 NA NA no change no change NA NA 19:33017649 19:17935144 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr19:15.03Mb]],inversion RHPN2 NA CCDC124 NA NA NA NA NA NA -RICTOR--FSHB(52263)/ARL14EP(35527) BS_6JHXXVR7 1.50310555860949 -0.351608667165641 NA 3.49236059274693 no change no change NA differentially expressed 5:39074111 11:30287524 ARRIBA frameshift 5 0 medium [],translocation RICTOR NA FSHB ARL14EP NA NA NA NA NA -RICTOR--FSHB(52263)/ARL14EP(35527) BS_KE56MMY0 1.38814365421014 -0.351608667165641 NA 2.96241158609724 no change no change NA differentially expressed 5:39074111 11:30287524 ARRIBA frameshift 2 0 medium [],translocation RICTOR NA FSHB ARL14EP NA NA NA NA NA -RICTOR--NAV2 BS_6JHXXVR7 1.50310555860949 1.92020773653918 NA NA no change no change NA NA 5:38990949 11:19832484 ARRIBA frameshift 10 4 high [INTERCHROMOSOMAL[chr5--chr11]],translocation RICTOR NA NAV2 NA NA NA NA NA NA -RICTOR--RNU6-909P(136837)/AC008825.1(21078) BS_6JHXXVR7 1.50310555860949 NA NA NA no change NA NA NA 5:39074111 5:28761600 ARRIBA frameshift 5 0 medium [],inversion RICTOR NA RNU6-909P AC008825.1 NA NA NA NA NA -RICTOR--RNU6-909P(136837)/AC008825.1(21078) BS_KE56MMY0 1.38814365421014 NA NA NA no change NA NA NA 5:39074111 5:28761600 ARRIBA frameshift 2 0 medium [],inversion RICTOR NA RNU6-909P AC008825.1 NA NA NA NA NA -RIMBP2--RIMBP2 BS_2XD3MNKD 0.0520382010439314 0.0520382010439314 NA NA no change no change NA NA 12:130406172 12:130422561 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.12Mb]],duplication/non-canonical_splicing RIMBP2 NA RIMBP2 NA NA NA NA NA NA -RIMBP2--RIMBP2 BS_39CGACC7 0.0747859180790418 0.0747859180790418 NA NA no change no change NA NA 12:130406172 12:130414306 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.12Mb]],duplication/non-canonical_splicing RIMBP2 NA RIMBP2 NA NA NA NA NA NA -RIMS2--AC090578.1(110909)/RPSAP74(323584) BS_HE57E1RP 1.22451988240181 NA NA NA no change NA NA NA 8:103501062 8:88919817 ARRIBA frameshift 1 0 low [],inversion RIMS2 NA AC090578.1 RPSAP74 NA NA NA NA NA -RIMS2--AC090578.1(73153)/RPSAP74(361340) BS_HE57E1RP 1.22451988240181 NA NA NA no change NA NA NA 8:103501062 8:88882061 ARRIBA frameshift 7 0 high [],inversion RIMS2 NA AC090578.1 RPSAP74 NA NA NA NA NA -RIMS2--AC131902.1(4353)/AC022034.4(114871) BS_HZRM07TW -1.2529839243915 NA NA NA no change NA NA NA 8:103697296 8:53400299 ARRIBA frameshift 3 0 high [],duplication RIMS2 NA AC131902.1 AC022034.4 NA NA NA NA NA -RIN2--AL121761.1 BS_EFEZB0ZH 5.06165481336986 NA NA NA differentially expressed NA NA NA 20:19960811 20:19799622 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr20:0.08Mb],LOCAL_REARRANGEMENT:+:[76846]],duplication RIN2 NA AL121761.1 NA NA NA NA NA NA -RIN2--AL121761.1 BS_EFEZB0ZH 5.06165481336986 NA NA NA differentially expressed NA NA NA 20:19935199 20:19799622 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr20:0.08Mb],LOCAL_REARRANGEMENT:+:[76846]],duplication RIN2 NA AL121761.1 NA NA NA NA NA NA -RIN2--AL121761.1 BS_GV3NZ9QD 2.94959636696072 NA NA NA differentially expressed NA NA NA 20:19889658 20:19799622 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr20:0.08Mb],LOCAL_REARRANGEMENT:+:[76846]],duplication RIN2 NA AL121761.1 NA NA NA NA NA NA -RIN2--AL121761.1 BS_NRPG5K4K 4.35347388170257 NA NA NA differentially expressed NA NA NA 20:19889658 20:19799622 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr20:0.08Mb],LOCAL_REARRANGEMENT:+:[76846]],duplication RIN2 NA AL121761.1 NA NA NA NA NA NA -RIN2--AL121761.1 BS_NRPG5K4K 4.35347388170257 NA NA NA differentially expressed NA NA NA 20:19935199 20:19799622 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr20:0.08Mb],LOCAL_REARRANGEMENT:+:[76846]],duplication RIN2 NA AL121761.1 NA NA NA NA NA NA -RIN2--AL121761.1 BS_PJPGVD62 2.42674588447294 NA NA NA differentially expressed NA NA NA 20:19960811 20:19799622 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr20:0.08Mb],LOCAL_REARRANGEMENT:+:[76846]],duplication RIN2 NA AL121761.1 NA NA NA NA NA NA -RIN2--AL121761.1 BS_PJPGVD62 2.42674588447294 NA NA NA differentially expressed NA NA NA 20:19935199 20:19799622 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr20:0.08Mb],LOCAL_REARRANGEMENT:+:[76846]],duplication RIN2 NA AL121761.1 NA NA NA NA NA NA -RIN3--LARGE1 BS_ZVZDDW2G 3.97081209079111 NA NA NA differentially expressed NA NA NA 14:92513976 22:33761558 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr14--chr22]],translocation RIN3 NA LARGE1 NA NA NA NA NA NA -RLIM--AL627224.1(8097)/FOXR2(15197) BS_QHS3V0GP -1.54387476352162 NA NA 609.738055232875 no change NA NA differentially expressed X:74614422 X:55608203 ARRIBA other 54 2 high [],inversion RLIM NA AL627224.1 FOXR2 NA NA NA TranscriptionFactor, Oncogene NA -RLIM--AL627224.1(8097)/FOXR2(15197) BS_QT3NZ2YZ -2.78282574149695 NA NA 632.16202682783 differentially expressed NA NA differentially expressed X:74614422 X:55608203 ARRIBA other 50 0 high [],inversion RLIM NA AL627224.1 FOXR2 NA NA NA TranscriptionFactor, Oncogene NA -RLIM--AL627224.1(8097)/FOXR2(15197) BS_V3Z3DB4N 2.42828715234616 NA NA 90.0335147326935 differentially expressed NA NA differentially expressed X:74614422 X:55608203 ARRIBA other 3 0 high [],inversion RLIM NA AL627224.1 FOXR2 NA NA NA TranscriptionFactor, Oncogene NA -RMDN1--MARCH1 BS_H1ZS5FMZ 0.840420614839905 3.95889066218432 NA NA no change differentially expressed NA NA 8:86506995 4:163545743 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr8--chr4]],translocation RMDN1 NA MARCH1 NA NA NA NA NA NA -RMND5A--HECW2 BS_RRAEQZ97 0.264531691545653 3.3224028225579 NA NA no change differentially expressed NA NA 2:86720809 2:196322620 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:109.42Mb]],inversion RMND5A NA HECW2 NA NA NA NA NA NA -RMRP--C1orf61 BS_YEQVW4ND 7.72566918451025 -1.44452265564691 NA NA differentially expressed no change NA NA 9:35657755 1:156426872 ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr9--chr1]],translocation RMRP NA C1orf61 NA Oncogene NA NA NA NA -RMRP--CROCC BS_4E1G7E3G 6.93632279145088 2.82536332542612 NA NA differentially expressed differentially expressed NA NA 9:35657755 1:16936639 ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr9--chr1]],translocation RMRP NA CROCC NA Oncogene NA NA NA NA -RMRP--PKM BS_QBR4WCQ2 8.6245540640826 0.936535460214864 NA NA differentially expressed no change NA NA 9:35657755 15:72207276 ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr9--chr15]],translocation RMRP NA PKM NA Oncogene Oncogene NA NA NA -RN7SKP106(93665)/RPS3AP23(55573)--TRDN BS_3F4FQJMR -0.234687383565864 4.29880403112017 -0.158725033432426 NA no change differentially expressed no change NA 6:141580077 6:123571132 ARRIBA other 5 0 high [],inversion RN7SKP106 RPS3AP23 TRDN NA NA NA NA NA NA -RN7SKP141(99014)/SMC4P1(55029)--NCKAP5 BS_M0QYNVK8 NA 6.9737032176387 NA NA NA differentially expressed NA NA 2:136489683 2:133559117 ARRIBA other 17 0 high [],inversion RN7SKP141 SMC4P1 NCKAP5 NA NA NA NA NA NA -RN7SKP159(90201)/AC079054.1(34996)--AC009435.1 BS_M1T1K5WV NA NA NA NA NA NA NA NA 8:6001437 8:6059817 ARRIBA other 8 4 low [],duplication RN7SKP159 AC079054.1 AC009435.1 NA NA NA NA NA NA -RN7SL104P(36465)/AC010145.1(9603)--AC007207.2 BS_W644VEVE NA NA NA NA NA NA NA NA 2:15987446 12:4026222 ARRIBA other 3 0 medium [],translocation RN7SL104P AC010145.1 AC007207.2 NA NA NA NA NA NA -RN7SL165P(2861)/ZDHHC18(8737)--ALG3 BS_DGTPWJ59 -0.368085093819063 -0.889709783483785 -1.08874585146319 NA no change no change no change NA 1:26817973 3:184245811 ARRIBA other 4 0 medium [],translocation RN7SL165P ZDHHC18 ALG3 NA NA NA Oncogene NA NA -RN7SL795P(18779)/GTSCR1(98747)--AC091305.2 BS_D2K9C7XR 6.27676109125892 NA 2.06509469978991 NA differentially expressed NA differentially expressed NA 18:70531787 18:70490055 ARRIBA other 5 0 medium [],duplication RN7SL795P GTSCR1 AC091305.2 NA NA NA NA NA NA -RNA5SP162(50921)/RNA5S1(1008)--AL606468.1 BS_TRKH2SPE NA NA 1.50841764511488 NA NA NA no change NA 1:228609260 1:212190041 ARRIBA other 3 0 medium [],duplication RNA5SP162 RNA5S1 AL606468.1 NA NA NA NA NA NA -RNF10--SIRT4 BS_61E80SD6 0.316712578136637 0.7711929235954 NA NA no change no change NA NA 12:120534968 12:120312456 ARRIBA frameshift 5 0 medium [CCLE,INTRACHROMOSOMAL[chr12:0.22Mb]],duplication RNF10 NA SIRT4 NA NA TumorSuppressorGene NA NA NA -RNF10--SIRT4 BS_61E80SD6 0.316712578136637 0.7711929235954 NA NA no change no change NA NA 12:120534968 12:120312584 ARRIBA in-frame 2 0 low [CCLE,INTRACHROMOSOMAL[chr12:0.22Mb]],duplication RNF10 NA SIRT4 NA NA TumorSuppressorGene NA NA NA -RNF103-CHMP3--AL353746.1 BS_D144EJRQ 3.35193554716877 NA NA NA differentially expressed NA NA NA 2:86526566 9:27941031 ARRIBA other 4 0 low [INTERCHROMOSOMAL[chr2--chr9]],translocation RNF103-CHMP3 NA AL353746.1 NA NA NA NA NA NA -RNF103-CHMP3--AL353746.1 BS_VMEX27TN 3.45276379106206 NA NA NA differentially expressed NA NA NA 2:86526566 9:27941031 ARRIBA other 5 0 low [INTERCHROMOSOMAL[chr2--chr9]],translocation RNF103-CHMP3 NA AL353746.1 NA NA NA NA NA NA -RNF11--C1orf185 BS_68BW2163 0.287354471843404 8.42116935909185 NA NA no change differentially expressed NA NA 1:51236879 1:51112464 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.09Mb],LOCAL_REARRANGEMENT:+:[88185]],duplication RNF11 NA C1orf185 NA NA NA NA NA NA -RNF13--CNTN4 BS_FAQQ0GCQ 0.430785383202723 -0.635113846764398 NA NA no change no change NA NA 3:149872154 3:2812990 ARRIBA frameshift 4 2 high [INTRACHROMOSOMAL[chr3:146.75Mb]],inversion/3'-3' RNF13 NA CNTN4 NA NA Oncogene NA NA NA -RNF130--BRAF BS_E94QRJDW -0.323695054296904 1.64334146890491 NA NA no change no change NA NA 5:180013061 7:140781693 ARRIBA in-frame 25 4 high [ChimerKB,Cosmic,INTERCHROMOSOMAL[chr5--chr7]],translocation RNF130 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -RNF135--BHMT BS_CYEY58NY 1.30318814637028 19.5010816515919 NA NA no change differentially expressed NA NA 17:30980468 5:79130933 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr17--chr5]],translocation/3'-3' RNF135 NA BHMT NA NA NA NA NA NA -RNF138--RNF125 BS_0SPCTBZY 4.63427119536391 2.87831172529208 NA NA differentially expressed differentially expressed NA NA 18:32092886 18:32068298 ARRIBA frameshift 5 1 high [YOSHIHARA_TCGA,GTEx,ChimerSeq,HGNC_GENEFAM,INTRACHROMOSOMAL[chr18:0.02Mb],LOCAL_REARRANGEMENT:+:[18642]],duplication RNF138 NA RNF125 NA NA NA NA NA TCGAFusion -RNF139--NSMCE2 BS_WMEHNDSK 4.86623926403561 10.1778237757844 NA NA differentially expressed differentially expressed NA NA 8:124475290 8:125357219 ARRIBA in-frame 2 1 low [INTRACHROMOSOMAL[chr8:0.60Mb]],deletion RNF139 NA NSMCE2 NA Oncogene NA NA NA NA -RNF165--RNF165 BS_N6NE6B3W 1.07254448801932 1.07254448801932 NA NA no change no change NA NA 18:46439195 18:46433190 ARRIBA frameshift 6 1 medium [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication RNF165 NA RNF165 NA NA NA NA NA NA -RNF168--TUBB8 BS_Z8F3GM85 4.88126694591277 16.6412544007699 NA NA differentially expressed differentially expressed NA NA 3:196502873 10:50233 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr3--chr10]],translocation RNF168 NA TUBB8 NA NA NA NA NA NA -RNF169--PLCB4 BS_B9V8RGTA 4.96133731201271 -0.174070063028388 NA NA differentially expressed no change NA NA 11:74789699 20:9290161 ARRIBA frameshift 10 0 high [INTERCHROMOSOMAL[chr11--chr20]],translocation/5'-5' RNF169 NA PLCB4 NA NA NA NA NA NA -RNF213--HSPG2 BS_YB07VF1X 3.41726888643104 7.93834815266123 NA NA differentially expressed differentially expressed NA NA 17:80343327 1:21851698 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr17--chr1]],translocation RNF213 NA HSPG2 NA CosmicCensus, Oncogene Oncogene NA NA NA -RNF216--VPS41 BS_Y3G1X98S 2.20036214661756 2.21538850415991 NA NA differentially expressed differentially expressed NA NA 7:5711761 7:38796864 ARRIBA in-frame 10 0 high [INTRACHROMOSOMAL[chr7:32.94Mb]],duplication RNF216 NA VPS41 NA Oncogene NA NA NA NA -RNF216P1--TNRC18 BS_Z1A875MW 3.09533316108223 2.94200509766387 NA NA differentially expressed differentially expressed NA NA 7:4997341 7:5329968 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr7:0.27Mb]],inversion RNF216P1 NA TNRC18 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_0T17SY47 1.44157073444444 1.44157073444444 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_0WVJYM9R 0.448206511352399 0.448206511352399 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_7B89YR6K 1.1368345321019 1.1368345321019 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_7Z93ZYMS -0.755830309281011 -0.755830309281011 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_983Z6CA6 0.661840521676778 0.661840521676778 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_CREQ97QC 0.499378270302122 0.499378270302122 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_E4QK839R 3.21964413204603 3.21964413204603 NA NA differentially expressed differentially expressed NA NA 13:78274337 13:78188309 ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_EHVYJAVA 0.661840521676778 0.661840521676778 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_ERJAJ0KA 1.68031860978636 1.68031860978636 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 12 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_FWMJPKCV 0.424052176132553 0.424052176132553 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_G7AGNB5G 1.40128006436968 1.40128006436968 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_G9XE3N9T 0.644151239603787 0.644151239603787 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_HA20Y4XY 0.315170802328671 0.315170802328671 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_JKXA3FQC 1.45698183461137 1.45698183461137 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_K5802F84 0.654787161151509 0.654787161151509 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_KXH37MPN 0.122848215672625 0.122848215672625 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_M1T1K5WV 4.03696386953949 4.03696386953949 NA NA differentially expressed differentially expressed NA NA 13:78274337 13:78188309 ARRIBA other 22 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_ME3HKN2C 1.252122203714 1.252122203714 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_N8J1DP02 0.479880985676203 0.479880985676203 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 7 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_NRPG5K4K 0.475954206493042 0.475954206493042 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_NT9NZYFD 0.332388361829317 0.332388361829317 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_PZVHMSYN 1.57950720033822 1.57950720033822 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_QNAQGAV6 -0.190995262246741 -0.190995262246741 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_SDA4RMMG 0.682824511600497 0.682824511600497 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 4 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_SFKZSJN1 0.28900875589884 0.28900875589884 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_T4P3J13C 1.72200398122733 1.72200398122733 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_WCRKYV0T 0.428102111354671 0.428102111354671 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF219-AS1--RNF219-AS1 BS_ZZPBANDD -0.64493262444934 -0.64493262444934 NA NA no change no change NA NA 13:78274337 13:78188309 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA -RNF24--ESF1 BS_PNYN0AYD 4.7109431015633 2.4870637598405 NA NA differentially expressed differentially expressed NA NA 20:3963875 20:13783183 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr20:9.70Mb]],duplication RNF24 NA ESF1 NA NA NA NA NA NA -RNF24--ESF1 BS_PNYN0AYD 4.7109431015633 2.4870637598405 NA NA differentially expressed differentially expressed NA NA 20:4015437 20:13783183 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr20:9.70Mb]],duplication RNF24 NA ESF1 NA NA NA NA NA NA -RNF24--NDUFAF5 BS_PNYN0AYD 4.7109431015633 -0.173969785983346 NA NA differentially expressed no change NA NA 20:3963875 20:13787535 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr20:9.77Mb]],duplication/5'-5' RNF24 NA NDUFAF5 NA NA NA NA NA NA -RNF41--GALNT8(54846)/AC005906.2(3094) BS_A0DYVX9J 0.672756663753464 2.51993443956028 NA NA no change differentially expressed NA NA 12:56221760 12:4906773 ARRIBA other 23 6 high [],deletion RNF41 NA GALNT8 AC005906.2 NA NA NA NA NA -RNF41--KCNA1 BS_A0DYVX9J 0.672756663753464 -1.26832512824587 NA NA no change no change NA NA 12:56221760 12:4912198 ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr12:51.28Mb]],deletion/5'-5' RNF41 NA KCNA1 NA NA NA NA NA NA -RNF41--PARD3 BS_A0DYVX9J 0.672756663753464 4.54534062544334 NA NA no change differentially expressed NA NA 12:56221760 10:34348115 ARRIBA other 2 1 medium [INTERCHROMOSOMAL[chr12--chr10]],translocation RNF41 NA PARD3 NA NA NA NA NA NA -RNFT2--RNFT2 BS_1QXEC43H 0.0137041484372915 0.0137041484372915 NA NA no change no change NA NA 12:116741094 12:116740345 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.12Mb]],duplication/non-canonical_splicing RNFT2 NA RNFT2 NA NA NA NA NA NA -RNFT2--RNFT2 BS_PEP9NZXN 2.08947759226888 2.08947759226888 NA NA differentially expressed differentially expressed NA NA 12:116741094 12:116740345 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.12Mb]],duplication/non-canonical_splicing RNFT2 NA RNFT2 NA NA NA NA NA NA -RNGTT--RNGTT BS_4D9DD103 -0.720308695943032 -0.720308695943032 NA NA no change no change NA NA 6:88769774 6:88844521 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.35Mb]],duplication/non-canonical_splicing RNGTT NA RNGTT NA NA NA NA NA NA -RNGTT--RNGTT BS_AGTPCRR4 1.51774478130818 1.51774478130818 NA NA no change no change NA NA 6:88769774 6:88844521 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.35Mb]],duplication/non-canonical_splicing RNGTT NA RNGTT NA NA NA NA NA NA -RNGTT--RNGTT BS_DMZP9G1H 1.23749426465789 1.23749426465789 NA NA no change no change NA NA 6:88769774 6:88844521 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.35Mb]],duplication/non-canonical_splicing RNGTT NA RNGTT NA NA NA NA NA NA -RNGTT--RNGTT BS_WCRKYV0T 1.4574793913442 1.4574793913442 NA NA no change no change NA NA 6:88769774 6:88844521 ARRIBA frameshift 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.35Mb]],duplication/non-canonical_splicing RNGTT NA RNGTT NA NA NA NA NA NA -RNH1--MFSD10 BS_QWNBZ9RJ -0.94032214120617 -0.154785961352467 NA NA no change no change NA NA 11:507266 4:2933944 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr11--chr4]],translocation/3'-3' RNH1 NA MFSD10 NA TumorSuppressorGene NA NA NA NA -RNU1-98P(18032)/AF130359.1(17330)--TTC3 BS_1EN5V3XW NA 3.25078366489797 NA NA NA differentially expressed NA NA 21:16737189 21:37159699 ARRIBA other 9 0 medium [],inversion RNU1-98P AF130359.1 TTC3 NA NA NA NA NA NA -RNU2-1--LTBP4 BS_YEB88D32 227.114437533778 3.99546256777818 NA NA differentially expressed differentially expressed NA NA 17:43233751 19:40600068 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr17--chr19]],translocation RNU2-1 NA LTBP4 NA NA NA NA NA NA -RNU6-1254P(5358)/AC073335.2(6208)--GTF2IP23 BS_3TQSE8HF NA 1.30326603426781 NA NA NA no change NA NA 7:66896649 7:66882893 ARRIBA other 1 0 low [],duplication RNU6-1254P AC073335.2 GTF2IP23 NA NA NA NA NA NA -RNU6-177P(11603)/AC018638.4(12307)--AC090114.3 BS_2SFTWNVE NA NA NA NA NA NA NA NA 7:128638878 7:128533648 ARRIBA other 1 2 medium [],duplication RNU6-177P AC018638.4 AC090114.3 NA NA NA NA NA NA -RNU6-177P(2183)/AC018638.4(21727)--AC090114.3 BS_61E80SD6 NA NA NA NA NA NA NA NA 7:128629458 7:128579999 ARRIBA other 1 0 low [],duplication RNU6-177P AC018638.4 AC090114.3 NA NA NA NA NA NA -RNU6-177P(2183)/AC018638.4(21727)--AC108010.1 BS_61E80SD6 NA NA NA NA NA NA NA NA 7:128629458 7:128579999 ARRIBA other 1 0 low [],duplication RNU6-177P AC018638.4 AC108010.1 NA NA NA NA NA NA -RNU6-2--RMRP BS_EK5PCKY0 -0.237275015226396 7.11814964686542 NA NA no change differentially expressed NA NA 19:1021630 9:35657955 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr19--chr9]],translocation RNU6-2 NA RMRP NA NA Oncogene NA NA NA -RNU6-2--SNHG22 BS_HKZENFDA 7.52728422559727 5.80003949160431 NA NA differentially expressed differentially expressed NA NA 19:1021629 18:49814292 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr19--chr18]],translocation RNU6-2 NA SNHG22 NA NA NA NA NA NA -RNU6-25P--RMRP BS_77317DY4 -0.0294627825494395 -1.43061731707524 NA NA no change no change NA NA 3:195214895 9:35658016 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr3--chr9]],translocation RNU6-25P NA RMRP NA NA Oncogene NA NA NA -RNU6-25P--RMRP BS_GSVCN2XC -0.0294627825494395 6.12932381215112 NA NA no change differentially expressed NA NA 3:195214895 9:35658016 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr3--chr9]],translocation RNU6-25P NA RMRP NA NA Oncogene NA NA NA -RNU6-42P--AC007952.4 BS_3MS8WVNR -0.0294627825494395 73.7397772412698 NA NA no change differentially expressed NA NA 3:196784978 17:19190230 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr3--chr17]],translocation RNU6-42P NA AC007952.4 NA NA NA NA NA NA -RNU6-42P--SNORD3C BS_3MS8WVNR -0.0294627825494395 17.824947116794 NA NA no change differentially expressed NA NA 3:196784978 17:19190230 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr3--chr17]],translocation RNU6-42P NA SNORD3C NA NA NA NA NA NA -RNU6-45P--SNORD3C BS_A87NPZAP -0.0416206020181549 16.9239671508652 NA NA no change differentially expressed NA NA 11:63970579 17:19190172 ARRIBA other 8 0 low [INTERCHROMOSOMAL[chr11--chr17]],translocation RNU6-45P NA SNORD3C NA NA NA NA NA NA -RNU6-706P(168001)/AC016205.1(4813)--AC016205.1 BS_QSTAVWGE NA NA NA NA NA NA NA NA 18:39202111 18:39208789 ARRIBA other 4 0 medium [],duplication RNU6-706P AC016205.1 AC016205.1 NA NA NA NA NA NA -RNU6-9--METTL12 BS_QXKRN6CR 4.35535912452032 1.76592389120543 NA NA differentially expressed no change NA NA 19:893591 11:62665431 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr19--chr11]],translocation RNU6-9 NA METTL12 NA NA NA NA NA NA -RNU6-974P(365828)/AL031313.1(130514)--TMEM147-AS1 BS_6VPKXXMR NA -0.49848939845902 NA NA NA no change NA NA X:82367155 19:35543239 ARRIBA other 3 2 medium [],translocation RNU6-974P AL031313.1 TMEM147-AS1 NA NA NA NA NA NA -RNU7-188P(72409)/SEM1(31297)--KMT2E BS_HX0S30NE NA 1.24545066106052 NA NA NA no change NA NA 7:96450329 7:105038126 ARRIBA other 1 0 low [],deletion RNU7-188P SEM1 KMT2E NA NA NA NA NA NA -ROBO1--FA2H(36255)/AC009132.1(31501) BS_42DY6WS7 4.38545732817719 0.515666647046778 NA NA differentially expressed no change NA NA 3:78938601 16:74811086 ARRIBA frameshift 2 0 medium [],translocation ROBO1 NA FA2H AC009132.1 TumorSuppressorGene, Oncogene NA NA NA NA -ROBO1--LINC02008 BS_51RA1PGE 3.25419685139543 NA NA NA differentially expressed NA NA NA 3:78617635 3:82077196 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr3:2.22Mb]],duplication/5'-5' ROBO1 NA LINC02008 NA TumorSuppressorGene, Oncogene NA NA NA NA -ROBO2--FRY BS_D0BGESQF 2.9076557957902 1.05380349871901 NA NA differentially expressed no change NA NA 3:77098340 13:32078834 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr3--chr13]],translocation ROBO2 NA FRY NA CosmicCensus NA NA NA NA -ROBO2--MTCYBP27(192705)/RNU6-976P(370149) BS_6VPKXXMR 1.98261203223809 NA NA NA no change NA NA NA 3:77098340 14:84369793 ARRIBA frameshift 4 0 medium [],translocation ROBO2 NA MTCYBP27 RNU6-976P CosmicCensus NA NA NA NA -ROBO2--MTCYBP27(192705)/RNU6-976P(370149) BS_M85CXHDV 2.29301128036544 NA NA NA differentially expressed NA NA NA 3:77098340 14:84369793 ARRIBA frameshift 4 0 medium [],translocation ROBO2 NA MTCYBP27 RNU6-976P CosmicCensus NA NA NA NA -ROBO2--ROBO2 BS_3H71BH6Q -0.257910227719242 -0.257910227719242 NA NA no change no change NA NA 3:77602491 3:77564954 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA -ROBO2--ROBO2 BS_7B89YR6K 1.80554424569801 1.80554424569801 NA NA no change no change NA NA 3:77602491 3:77564954 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA -ROBO2--ROBO2 BS_GYA4V1RD 0.153381827272339 0.153381827272339 NA NA no change no change NA NA 3:77098340 3:77098014 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA -ROBO2--ROBO2 BS_JXNZYGCR 0.253015951344799 0.253015951344799 NA NA no change no change NA NA 3:77602491 3:77564954 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA -ROBO2--ROBO2 BS_KX6J8TRK 1.32056354159118 1.32056354159118 NA NA no change no change NA NA 3:77602491 3:77564954 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA -ROBO2--ROBO2 BS_M4NVX721 2.05170882123773 2.05170882123773 NA NA differentially expressed differentially expressed NA NA 3:77602491 3:77564954 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA -ROBO2--ROBO2 BS_R7HZCZ8B 1.04046949505913 1.04046949505913 NA NA no change no change NA NA 3:77602491 3:77564954 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA -ROBO2--ROBO2 BS_TBWYAFSM 4.16917403376853 4.16917403376853 NA NA differentially expressed differentially expressed NA NA 3:77568434 3:77546338 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA -ROBO2--ROBO2 BS_TDEFAPNH 4.63613761574065 4.63613761574065 NA NA differentially expressed differentially expressed NA NA 3:77602491 3:77564954 ARRIBA frameshift 17 1 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA -ROBO3--SORL1(124859)/RNU6-256P(245803) BS_5PJCHF6V 0.756215473907498 -0.807043734401641 NA NA no change no change NA NA 11:124865737 11:121758552 ARRIBA frameshift 5 1 high [],inversion ROBO3 NA SORL1 RNU6-256P NA Oncogene NA NA NA -ROCK1--ATP6V0E1 BS_1D6PZNKN 1.98534038183298 0.10752429713647 NA NA no change no change NA NA 18:20984351 5:173034399 ARRIBA in-frame 9 1 high [INTERCHROMOSOMAL[chr18--chr5]],translocation ROCK1 NA ATP6V0E1 NA Kinase, Kinase NA NA NA NA -ROCK1--EXOGP1(25386)/AC022809.1(31790) BS_QWTE1CWR -0.564133975510864 -0.104721449762104 NA NA no change no change NA NA 18:21110818 18:21208885 ARRIBA frameshift 2 0 medium [],inversion ROCK1 NA EXOGP1 AC022809.1 Kinase, Kinase NA NA NA NA -ROR1--AP001360.2(4751)/TRIM29(94366) BS_NH7K4CD9 10.5564046010821 NA NA 2.78145218027854 differentially expressed NA NA differentially expressed 1:63774508 11:120016909 ARRIBA frameshift 5 0 high [],translocation ROR1 NA AP001360.2 TRIM29 Kinase, Kinase NA NA NA NA -ROR1--DNAJC6 BS_FKDQJJB5 12.6630642236138 -1.29466974449389 NA NA differentially expressed no change NA NA 1:63774508 1:65364635 ARRIBA in-frame 1 0 low [ChimerPub,INTRACHROMOSOMAL[chr1:1.07Mb]],deletion ROR1 NA DNAJC6 NA Kinase, Kinase Oncogene NA NA NA -RORA-AS1--RORA-AS1 BS_8Q77HZ4R 19.8030745535646 19.8030745535646 NA NA differentially expressed differentially expressed NA NA 15:60601057 15:60528580 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.15Mb]],duplication/non-canonical_splicing RORA-AS1 NA RORA-AS1 NA NA NA NA NA NA -RP1--RP1 BS_61E80SD6 465.645003125552 465.645003125552 NA NA differentially expressed differentially expressed NA NA 8:54739029 8:54648985 ARRIBA frameshift 15 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.32Mb]],duplication/non-canonical_splicing RP1 NA RP1 NA NA NA NA NA NA -RP1--RP1 BS_K74PZET7 188.874730330092 188.874730330092 NA NA differentially expressed differentially expressed NA NA 8:54739029 8:54648985 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.32Mb]],duplication/non-canonical_splicing RP1 NA RP1 NA NA NA NA NA NA -RPA1--SMTNL2 BS_M0QYNVK8 0.726744603524384 4.5940320378334 NA NA no change differentially expressed NA NA 17:1844686 17:4607361 ARRIBA in-frame 13 1 high [INTRACHROMOSOMAL[chr17:2.68Mb]],deletion RPA1 NA SMTNL2 NA TumorSuppressorGene NA NA NA NA -RPAIN--MINK1 BS_QWTE1CWR 0.389136005857318 -1.16179448021536 NA NA no change no change NA NA 17:5421466 17:4889647 ARRIBA in-frame 43 4 high [INTRACHROMOSOMAL[chr17:0.52Mb]],duplication RPAIN NA MINK1 NA NA Kinase NA NA NA -RPAIN--MINK1 BS_WKESC3XN 0.530965646460985 -0.0273076124663867 NA NA no change no change NA NA 17:5421466 17:4889647 ARRIBA in-frame 41 0 high [INTRACHROMOSOMAL[chr17:0.52Mb]],duplication RPAIN NA MINK1 NA NA Kinase NA NA NA -RPE--AC016651.1(27679)/LINC02149(47453) BS_6JHXXVR7 2.77732508048428 NA NA NA differentially expressed NA NA NA 2:210009736 5:15144686 ARRIBA frameshift 6 0 medium [],translocation RPE NA AC016651.1 LINC02149 NA NA NA NA NA -RPGRIP1L--AL009028.1(20034)/TBX22(624557) BS_PNYN0AYD 3.55916956842931 NA NA -0.0845317414825413 differentially expressed NA NA no change 16:53610967 X:79390199 ARRIBA frameshift 2 0 medium [],translocation RPGRIP1L NA AL009028.1 TBX22 NA NA NA Oncogene, TranscriptionFactor NA -RPGRIP1L--RPGRIP1L BS_7G42J2SK 4.6877957261857 4.6877957261857 NA NA differentially expressed differentially expressed NA NA 16:53664870 16:53687965 ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr16:0.11Mb]],duplication/non-canonical_splicing RPGRIP1L NA RPGRIP1L NA NA NA NA NA NA -RPGRIP1L--RPGRIP1L BS_NGHK9RZP 4.33712461230094 4.33712461230094 NA NA differentially expressed differentially expressed NA NA 16:53664870 16:53692364 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.11Mb]],duplication/non-canonical_splicing RPGRIP1L NA RPGRIP1L NA NA NA NA NA NA -RPH3A--RPH3A BS_014EVM2D -1.18761668584361 -1.18761668584361 NA NA no change no change NA NA 12:112651827 12:112646223 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.33Mb]],duplication RPH3A NA RPH3A NA NA NA NA NA NA -RPH3A--RPH3A BS_2XD3MNKD -0.0684445656681407 -0.0684445656681407 NA NA no change no change NA NA 12:112651827 12:112646223 ARRIBA other 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr12:0.33Mb]],duplication RPH3A NA RPH3A NA NA NA NA NA NA -RPH3A--RPH3A BS_3F4FQJMR -1.71435389222762 -1.71435389222762 NA NA no change no change NA NA 12:112651827 12:112646223 ARRIBA other 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr12:0.33Mb]],duplication RPH3A NA RPH3A NA NA NA NA NA NA -RPH3A--RPH3A BS_8MA5B8Y9 -1.57807317556753 -1.57807317556753 NA NA no change no change NA NA 12:112651827 12:112646223 ARRIBA other 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr12:0.33Mb]],duplication RPH3A NA RPH3A NA NA NA NA NA NA -RPH3AL--AC141424.1 BS_Q3TBCK4V 0.845250973504621 NA NA NA no change NA NA NA 17:319420 17:404592 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[18214]],duplication RPH3AL NA AC141424.1 NA NA NA NA NA NA -RPL17P45(1263865)/KC6(57414)--KC6 BS_KVNGNETA -0.0294627825494395 31.4551378454536 31.4551378454536 NA no change differentially expressed differentially expressed NA 18:41408369 18:41501276 ARRIBA other 4 0 high [],duplication RPL17P45 KC6 KC6 NA NA NA NA NA NA -RPL7P20(96352)/AC114321.1(2835)--TENM2 BS_M4923M40 -0.151403311109596 3.17874753829021 NA NA no change differentially expressed NA NA 5:166125663 5:167284764 ARRIBA other 1 2 medium [],deletion RPL7P20 AC114321.1 TENM2 NA NA NA NA NA NA -RPL7P34(12294)/LIPF(33213)--LIPJ BS_7BTZQKYY 0.644334108755045 11.7621020319425 2.66143077953988 NA no change differentially expressed differentially expressed NA 10:88631228 10:88602576 ARRIBA other 14 3 high [],duplication RPL7P34 LIPF LIPJ NA NA NA NA NA NA -RPL7P34(12294)/LIPF(33213)--LIPJ BS_8ZP3CBQA -0.10154111391223 4.28193767513622 0.632034178596649 NA no change differentially expressed no change NA 10:88631228 10:88602576 ARRIBA other 3 1 high [],duplication RPL7P34 LIPF LIPJ NA NA NA NA NA NA -RPL7P34(12294)/LIPF(33213)--LIPJ BS_SDCNP7MW -0.10154111391223 10.0660871081209 1.69466473619234 NA no change differentially expressed no change NA 10:88631228 10:88602576 ARRIBA other 4 0 medium [],duplication RPL7P34 LIPF LIPJ NA NA NA NA NA NA -RPL7P34(12296)/LIPF(33211)--LIPJ BS_M1T1K5WV -0.10154111391223 5.42565851600808 0.864080205555419 NA no change differentially expressed no change NA 10:88631230 10:88587267 ARRIBA other 1 5 high [],duplication RPL7P34 LIPF LIPJ NA NA NA NA NA NA -RPL7P34(12298)/LIPF(33209)--LIPJ BS_AGTPCRR4 -0.10154111391223 5.26821824185102 0.463669936803553 NA no change differentially expressed no change NA 10:88631232 10:88602576 ARRIBA other 2 0 low [],duplication RPL7P34 LIPF LIPJ NA NA NA NA NA NA -RPL7P34(12298)/LIPF(33209)--LIPJ BS_YE1MAQYJ -0.10154111391223 5.77107308048525 1.13092927691632 NA no change differentially expressed no change NA 10:88631232 10:88602576 ARRIBA other 3 1 high [],duplication RPL7P34 LIPF LIPJ NA NA NA NA NA NA -RPL7P34(4233)/LIPF(41274)--LIPJ BS_4NWHYH53 -0.10154111391223 11.6258510273629 1.66857126348171 NA no change differentially expressed no change NA 10:88623167 10:88587266 ARRIBA other 3 1 high [],duplication RPL7P34 LIPF LIPJ NA NA NA NA NA NA -RPRD2--SPRR2E BS_Y3G1X98S 2.91639369287863 -0.551776414463747 NA NA differentially expressed no change NA NA 1:150364919 1:153093770 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:2.62Mb]],inversion RPRD2 NA SPRR2E NA NA NA NA NA NA -RPS6KA3--AL807740.1(234690)/AL807742.1(42679) BS_07ANYSYQ 2.47419020540172 NA NA NA differentially expressed NA NA NA X:20167589 X:20727039 ARRIBA frameshift 2 1 high [],duplication RPS6KA3 NA AL807740.1 AL807742.1 Kinase NA NA NA NA -RPS6KA5--CCDC88C BS_9NZ2D6AD 1.6491090831349 2.59625780402617 NA NA no change differentially expressed NA NA 14:90978306 14:91359711 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr14:0.21Mb]],duplication RPS6KA5 NA CCDC88C NA Kinase NA NA NA NA -RPS6KA5--CCDC88C BS_9NZ2D6AD 1.6491090831349 2.59625780402617 NA NA no change differentially expressed NA NA 14:90978306 14:91379885 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.21Mb]],duplication RPS6KA5 NA CCDC88C NA Kinase NA NA NA NA -RPSAP74(88205)/KRT8P4(80623)--AF117829.1 BS_DGTPWJ59 NA NA 3.23336763984107 NA NA NA differentially expressed NA 8:89331998 8:89725641 ARRIBA other 2 0 medium [],duplication RPSAP74 KRT8P4 AF117829.1 NA NA NA NA NA NA -RPSAP74(88205)/KRT8P4(80623)--AF117829.1 BS_GV3NZ9QD NA NA 16.0131034896499 NA NA NA differentially expressed NA 8:89331998 8:89725641 ARRIBA other 2 1 high [],duplication RPSAP74 KRT8P4 AF117829.1 NA NA NA NA NA NA -RPSAP74(88205)/KRT8P4(80623)--AF117829.1 BS_QNAQGAV6 NA NA 4.6223014066524 NA NA NA differentially expressed NA 8:89331998 8:89725641 ARRIBA other 2 0 medium [],duplication RPSAP74 KRT8P4 AF117829.1 NA NA NA NA NA NA -RRAS2--AC018523.2 BS_D0BGESQF -0.569167852689654 NA NA NA no change NA NA NA 11:14364391 11:14498985 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr11:0.13Mb]],duplication RRAS2 NA AC018523.2 NA Oncogene NA NA NA NA -RRAS2--COPB1 BS_D0BGESQF -0.569167852689654 2.57050373467947 NA NA no change differentially expressed NA NA 11:14364391 11:14498985 ARRIBA frameshift 2 0 low [Klijn_CellLines,INTRACHROMOSOMAL[chr11:0.08Mb],LOCAL_REARRANGEMENT:-:[78934]],duplication RRAS2 NA COPB1 NA Oncogene NA NA NA NA -RRAS2--INSC BS_T1YHK6B7 2.14936402025707 6.66359575565769 NA NA differentially expressed differentially expressed NA NA 11:14358763 11:15149130 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr11:0.75Mb]],inversion RRAS2 NA INSC NA Oncogene NA NA NA NA -RRAS2--INSC BS_T1YHK6B7 2.14936402025707 6.66359575565769 NA NA differentially expressed differentially expressed NA NA 11:14358763 11:15175741 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:0.75Mb]],inversion RRAS2 NA INSC NA Oncogene NA NA NA NA -RRAS2--WNT9B(16166)/LINC01974(6846) BS_VVFBW0YH 1.46859543507773 -0.777673993200134 NA NA no change no change NA NA 11:14358763 17:46902896 ARRIBA frameshift 3 1 high [],translocation RRAS2 NA WNT9B LINC01974 Oncogene NA NA NA NA -RRN3P2--ANK2 BS_014EVM2D 0.332863455743079 1.34947134185702 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_02NZT8CE 3.38636069683952 0.819482901322291 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_044XZ8ST 0.782347920412349 1.34904955941134 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 61 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_052PZFMK -0.882968151505165 0.320836308881881 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_063ERW0R 1.43118351341034 0.945136588782071 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_06AMMCXR 1.30156283392735 -0.845163035856809 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_07ANYSYQ -0.180125856175574 1.33804507765298 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_09R7GDA7 -1.89356094647703 1.80929535425522 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_09Z7TC35 -1.68768359985856 -0.0613542110579309 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_0BXY0F9N -1.62156913975889 0.57294728491451 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_0C7VZC0A -0.114607054219569 1.65880463681231 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_0HW7W7SD -1.58895730564635 -1.38941619741803 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_0J9SHHSC 1.50124724425034 0.0257919257294979 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_0QYS36NR -0.99151935072161 -0.571388228011334 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 1 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_0SCXXM6N 0.0545488000725473 1.12574493338291 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_0T17SY47 0.216184082645836 0.41056471207971 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_0WVJYM9R 0.0338296834457221 0.576999481254237 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_0X9EGHY2 1.24243640712457 1.19249993822183 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_0XEG6SNV 7.74269040245763 2.1543518839316 NA NA differentially expressed differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_0Y66ZBWE 2.91965492871987 0.845851667779037 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_13CGKADW -0.600153253762871 1.52402676233874 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_15ETQ0E4 1.51509943292605 -2.2681931527048 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_17WYVEEC -0.675129005470426 0.102262417852409 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_196BBNEJ -1.46135841944862 0.640079862216022 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1A6MQ9ZA 0.48283090070517 0.792290019210295 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1AYRM596 -1.72119715626458 -1.22006925361671 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1D6PZNKN -0.0930271978254758 0.92742577238807 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1EN5V3XW -1.72119715626458 1.7799107991454 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1G3WYEN3 -0.246846904837802 1.90709278910137 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 59 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1HQ76V6D 1.01173356463001 1.79058851940156 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1J2WQ08M 0.351951138051122 -1.58072505721941 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1JDG6JV5 1.76873509275863 -0.0282121810870386 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1KYGSMA7 -0.478530038802957 0.55458783132121 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1NPD7PVG -0.337756518157034 0.983687656271448 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1QNTEZPS -1.30790969597279 -0.295723882563386 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1QXEC43H -1.85842835307473 -0.213712119872143 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1RT76ANT -1.58895730564635 2.34087743588075 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1RXZ3BP7 0.274991754670431 0.575199737523371 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1T19NFJ8 0.196368256330414 1.43533196232303 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1TPWFSK6 0.609163040633391 0.71412261423994 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1TWCV047 -0.964076238346258 0.925243936156642 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1XJ73KBQ -1.33808576235117 -3.92726572473975 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1ZVXF5FE 1.98158523789509 1.25665090743024 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_21RE8W46 2.6160545900773 1.58166441182868 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_24AHZ9ZW 0.679429867372639 0.73631308062182 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_258RRGDM -0.0502479381703337 1.49559040938376 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_25T139TX 3.30276632263329 2.10297280906358 NA NA differentially expressed differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_264RCK7G 1.92026514845807 0.295951620451494 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_273HKCT4 1.56998643928314 0.259541182811029 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_27QE6BV7 -0.454686050872541 1.26880239367051 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_29CPJ040 -0.454686050872541 1.3605395305142 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_2A162JH9 0.979836911592852 -1.44381772339886 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_2A5R9MEJ -0.292017611557012 0.759214774286516 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_2ADZNNV4 -0.454686050872541 1.43306215712902 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 81 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_2AR3AP0N -0.649964924902585 1.28744695098056 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_2EMW8ZG3 0.0338296834457221 1.73582617215952 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_2EN3X6HB 0.555557227577704 0.781801954577578 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_2KJ2YAZR -0.2244702488065 0.730588682318541 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_2R9TCR03 -0.114607054219569 1.46114636195447 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_2SFTWNVE -1.18964902468588 -0.0243185340417173 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_2WPQ8YCW 1.48734208340494 0.200967737228094 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_2XD3MNKD 1.75581786734556 1.12558386589633 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_2Z1MKS84 -1.39919972412 -2.48474084089671 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_30VC3R2Q 1.65079410102969 0.396824108871883 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_34201DKZ -0.99151935072161 0.74891807674837 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 93 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_37GTVG4N -1.18964902468588 0.750942124060086 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 64 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_398KYV92 0.156409665975911 1.31495161598611 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_399RPKC9 1.22750334658898 0.891421524221469 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_39CGACC7 0.0545488000725473 0.930511760914926 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3BVVWHP5 -1.36851435104847 2.15908470615183 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3EVSN5QD 0.408620261074053 2.18330888210668 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3F4FQJMR -0.909803661718546 1.65109927901527 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3F5PR9GS -1.78916539928987 -0.385670037599962 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3G3KWY18 0.62685745574391 0.849284967353777 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 65 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3H71BH6Q 3.00324930292611 1.08051518528948 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3KASVCSQ -0.882968151505165 1.88043710878604 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3MS8WVNR 0.898849262462047 1.35508479658221 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3MYEMXPQ -1.16067520501373 -1.621296256447 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3NNQ6PSB 0.591382099921616 0.778423642407554 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3NWQXPQV -1.0191711579706 -2.43627877206768 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3P20Q2C3 3.07597562979864 1.0387678323262 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3PYESPHA -1.30790969597279 2.05388051008924 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3Q0GTSYH -1.16067520501373 0.393810842738193 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3V3KE3VT -1.39919972412 -0.420348974346733 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3W07B2TG 0.0338296834457221 1.53373250603579 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 46 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3X9WMZGJ -0.675129005470426 1.11248473646671 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_3XY76V8T 0.696786440326467 1.28876023373155 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_401R3KV0 0.696786440326467 0.862757968598105 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_40MP5BWR -1.82363196189447 0.703330586476467 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_42DY6WS7 1.89544460751256 0.504603121054084 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_42Y3YANN 0.931461096574588 0.0950446744516571 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_44A3ES23 -0.360843548920479 0.642242287768024 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_470DYRJQ -0.72598571042387 1.34228628845575 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_478TN841 -0.551014733942681 0.601105217254139 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_47SJZ3PH 1.16715017468167 1.37375148678156 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_49852ZBH -0.777563811100314 0.66733367400589 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_49BQS7Z6 -1.18964902468588 1.32054085892679 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 55 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_49FQXT2E 0.48283090070517 1.63569754213917 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_49VCQD19 1.48734208340494 -0.408025685143522 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4A45GGSW 0.74836454100291 0.138764249479575 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4B0BAVTX -0.314815147863089 1.06538070385637 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4BWB0FA0 0.849376456718399 1.34299209485972 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 120 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4C4MZ4NT -0.0502479381703337 -0.369999982613883 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4CP4T22V -1.82363196189447 -1.9975345977796 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4E1G7E3G 2.82446113802157 1.0338360725953 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4FZS7TX4 -1.85842835307473 0.602655501414634 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4HQ3T2NC -0.2244702488065 0.395318165866081 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4NF35AF6 -1.39919972412 0.374851815038403 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4PH1MBGR -1.62156913975889 -0.993085714936512 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4QW2S1Q8 0.765395931061703 -0.338316062550575 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4SCWT0FX -1.75502247115923 -0.195629916660388 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4T0HPZDC -0.856329240201287 -0.151275469624287 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4W1DBAN4 -0.246846904837802 1.73170861504413 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4W68NV3M -1.43014625244211 -1.929059680833 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4Y6BCYK5 -0.751683309462311 0.997326876443687 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4Z2F4P9N 0.74836454100291 -0.565523010358968 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_51RA1PGE 0.0545488000725473 0.94315811547037 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_52426AMF -0.751683309462311 1.00653043250895 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_52C576HH -0.314815147863089 0.96692155147645 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_52DAPP1Y -0.675129005470426 0.689320251586575 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_52MPKTJH 0.882433003744091 1.91398898636555 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_53CTGDQG -0.624973794708382 2.44354633337994 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_53GQKVEX 0.799221245956355 0.0959486264600833 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_53M8PP88 -1.72119715626458 -0.688451040947146 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_55JW3HFM 0.591382099921616 0.590658150576175 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_55P8HPYD 1.66408916201965 0.406329860691307 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_593HEWBF 2.0178869882895 1.08349239160148 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_5965SFPZ 0.0956361878563642 1.05532519686033 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_5CMGN56B -0.0290455741336873 0.787746806728969 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_5JM573JC -1.33808576235117 0.753973532372789 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_5K3R0F5D -0.0715746569591287 1.67549206607838 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_5NWDARXG 0.898849262462047 1.1160528567927 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_5P1TN10Z -1.58895730564635 1.09731520568633 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_5P3CZQV8 1.13659373326975 -0.562373458181785 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_5PEFNDCY 0.408620261074053 0.845087738068169 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 52 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_5PJCHF6V -0.675129005470426 -1.89434629938341 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_5PV5N4HQ -0.675129005470426 0.435992353339393 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_5YJEPPTP -0.136315746340283 0.489021996620598 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_60K3EQ9S 0.731253002931069 1.22572196578906 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_61E80SD6 -1.21885556829358 0.307381783210278 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_66ABA973 -0.114607054219569 0.57474949371056 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_66HQ3E4Z 0.176443849602905 0.413299111110071 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_67Z63A2K -0.337756518157034 1.33960145843213 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_680K119G -0.2244702488065 1.65191822731725 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_68BW2163 0.0129918319781595 0.0166500759361335 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_699TN5RN 1.69053433407262 0.487360762157818 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_6G6C7VPX -1.96486117464323 0.198139291753856 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_6H1C1ME9 -0.2244702488065 0.983863235736565 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_6HTK4YJP 1.316195429649 -2.40428703646751 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_6MY8W3H0 -0.38407810164795 1.68239549966733 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_6MZ7FRZH 1.41700729611789 1.77155771394066 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_6N3AFF66 1.27211979751414 0.259813874619318 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_6NTXGQAC 1.5426464974771 -0.099582319846426 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_6P50QTPP -0.600153253762871 1.36416599539809 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 56 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_6VF6VPCG 1.15190405117247 1.13425901732769 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_6WP1FHTE 0.464419746789818 0.779219163892437 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_74FS6GMW -1.68768359985856 -0.952700717036529 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_769BDPDB 0.898849262462047 0.803691398318742 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_775HDFNY 0.995820212623824 0.774041383059034 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_77CDMEY4 -0.526692267805133 0.487598184119679 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_78QX3XDF 1.22750334658898 0.280137973391775 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_7B89YR6K 0.979836911592852 2.34402879633991 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_7BTZQKYY -0.478530038802957 1.16426670141639 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 93 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_7C40TRCY -1.55663535833827 -0.31610792783076 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_7FWZ518S -1.49284082502907 0.238683187861936 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_7N0B2CY1 -0.454686050872541 1.97555589353042 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_7P83Z28P 0.389828513152717 0.763837375810769 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_7T1J3KET -0.777563811100314 1.01050846007227 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_7XQRH69M -1.13193042978938 0.0220152521115831 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_7XRN3CFX -0.856329240201287 1.49893128995326 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 62 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_7Z93ZYMS 0.849376456718399 0.400582944905535 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_7ZV3DPGT -1.65447610760235 -0.390926742331116 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_81SP2HX4 -1.58895730564635 -0.47654904797607 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_850BAHH9 -1.36851435104847 -2.24427380873787 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_86Q14TZG -0.803629837630822 0.769047328581641 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_8D0NYM46 -1.49284082502907 -0.8030014029963 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_8F9BDWY4 0.351951138051122 0.0606288845483663 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_8GW1TMV2 1.27211979751414 -0.35012612266142 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_8J3B6ZB6 -0.964076238346258 0.20350918605403 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_8NY9J9NQ -0.909803661718546 1.46180297126413 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_8PNA0V6R -1.52459818959711 0.560503352511426 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_8RCR7Y4B 0.351951138051122 0.734883847775938 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_8RHPJ740 -0.454686050872541 0.343796259159896 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_8S86CM61 -1.72119715626458 -2.42508049467817 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_8SKZ7BRN 3.07597562979864 -0.00626907292565134 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_8VAZSJEN 0.464419746789818 1.36736737030738 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_8Z3SCKB5 -1.21885556829358 1.44185686998254 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_8ZP3CBQA 0.609163040633391 -0.292668872373821 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_90B22NGP -1.33808576235117 2.16927843873344 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_912NX4Y0 1.33076937753506 0.997152728459202 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_91VYM11A 0.332863455743079 1.7803435686882 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_92VDQ0NE 1.07469955582796 1.58970121482658 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_94MT16N2 6.0366570170657 1.39028999353203 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_9755PSCS -2.00104251923191 1.16536765144225 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_97M1E2DW 3.79253819973507 -0.176677374346073 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_983Z6CA6 -0.751683309462311 -0.438591810240421 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_996ZS2A4 -0.114607054219569 -1.71369699787575 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_9BJARSX3 -1.10341110610305 0.994189388052384 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_9CA93S6D 0.963783043882665 0.16496885005652 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_9DFBHHB5 -0.502531413931434 0.91959409296172 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_9DZ253JY -1.62156913975889 -1.83676953492664 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_9F09XV62 1.316195429649 0.764038064071396 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_9FHSNVS0 -0.360843548920479 0.964436244049315 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_9HSGV9TJ 0.696786440326467 1.75307421537733 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_9M5XJ10G -1.65447610760235 0.574073896807271 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_9NJHQE9F -1.72119715626458 -0.47654904797607 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_9NZ2D6AD -1.85842835307473 -0.0181723823088984 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_9PB3XH5D -1.62156913975889 1.06788500414925 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_9Q6Z6VJC -0.0715746569591287 0.199271253696632 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_9SJWWYQ4 0.136264489075611 1.08547420604501 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_A13BMEF5 1.30156283392735 0.558685457175288 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_A14Z8BBK -1.89356094647703 -0.184160770073881 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_A1VEGWTR 0.849376456718399 0.64289046142683 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_A3QZB9Y2 -0.909803661718546 -0.241953426749211 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_A46RDWGM 1.13659373326975 0.201815323249393 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_A7MC2KR2 -0.314815147863089 0.903633626911404 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_A7Q8G0Y1 4.54432060301512 0.515142612968729 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_A87NPZAP -0.430997399470754 -1.13640926537673 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ABYF92Z9 0.427315392898086 0.772245269825709 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_AD4JPN9Q 0.0545488000725473 1.33279914384031 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 46 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_AG3D3435 -0.964076238346258 1.96862417372169 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_AG4H9S3J 0.255494683133196 0.849475496243413 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_AGTPCRR4 -0.478530038802957 0.515842850247993 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_AHEFXG7W -1.43014625244211 0.70832032299342 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_AJ6X83G5 -1.39919972412 2.17141197209518 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_AKRHBPNZ 1.9937261344158 1.35298199556541 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 44 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_AM70R8RG -1.78916539928987 0.16583518699408 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_AMQGM1V9 -1.18964902468588 2.1016386224956 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_AMZ70B6F -1.39919972412 -0.303770387464115 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_AP0SZ364 1.04335285195603 0.776632310985684 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ARBQDTT5 0.0338296834457221 1.7133326854535 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ARFQ1WG3 1.316195429649 0.134355936366346 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_AVYNZHSB -1.68768359985856 1.09321340138092 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_AWH9757B 1.8199499553218 0.606635249489289 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_B0SVFK4P 2.98483814901076 0.852901247479905 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_B1C6GZ84 0.136264489075611 -0.518901514837048 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_B1HVNV0T -0.502531413931434 1.93302761472324 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_B3M5SGPA -1.21885556829358 1.27204733186184 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_B61168DE -0.936838694285395 -2.5723820666496 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_B7GEH89C 3.15609088077857 0.689950138862262 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_B7QS4DHK 1.34528514583361 0.0817293141341181 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_B7X8VXQ3 0.464419746789818 1.26258967769523 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_B8T7M0WV 0.0545488000725473 0.659440098493744 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_BA6AZWB3 0.661990049146207 1.42287631227946 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_BB0YW800 -1.0191711579706 1.22723687852205 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_BC936YNZ 0.176443849602905 1.37014611845597 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_BHR08WGW -1.18964902468588 -0.614432338281802 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_BJDNWMJH -1.0191711579706 2.601915953715 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_BKQZ550R 0.427315392898086 0.477596834814635 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_BKR4E30C -0.407462073747548 0.227876159699295 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_BN986DF6 3.02156770504302 0.2130749300361 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_BPSTSCBJ 0.74836454100291 0.705827346937609 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_BPWEFR89 -1.58895730564635 0.800946568866458 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_BSV07M7Z -1.72119715626458 -1.44304969133357 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_BVSW4GTG -1.27798199509637 -0.568227435146859 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_BWBDH9GM 1.316195429649 -1.38570430092509 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_C05FKR8X 0.537511557141385 0.956600738967151 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_C41DJZ1F 3.12070184105494 -0.137330997475541 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_C51RB0YR -0.624973794708382 1.453114550059 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_C6SKJG3N 1.44530467729309 0.61851703955045 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_C6ZZ3FY5 0.313675046413054 2.09985802186924 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_C7A2TYAC -1.18964902468588 -0.231627666856442 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_C7N3J4NW 0.216184082645836 1.58019894635787 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_C80S5N37 -0.0715746569591287 0.866721883226526 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_CB6VK7PB 1.33076937753506 -0.161811960737733 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_CGB2WS2A -0.430997399470754 1.23132018687875 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_CQSAJ7BF 1.79443269179707 1.08992457677392 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_CREQ97QC 0.313675046413054 1.84014732040465 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_CS170P7T 2.68685895767492 1.86036405982265 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_CTR5X93B 0.176443849602905 0.852901247479905 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_CVGFNCBJ 0.156409665975911 1.38974138090589 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_CW9QV8AG 0.0956361878563642 1.51502627085867 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_CZ3ER8DY 1.07469955582796 1.03366574787729 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_CZ82ANWP 0.0545488000725473 0.0439245855299003 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_D0BGESQF -1.82363196189447 0.133472854123423 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_D0RDN4K5 2.49137282808725 0.894761100268177 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_D144EJRQ -1.82363196189447 -0.187378392171997 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_D29RPBSZ 3.31963964817729 0.485460151646819 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_D2K9C7XR 0.979836911592852 0.384737779128374 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_D3YBV7KB 0.351951138051122 0.821228190142709 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 54 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_D8N31T39 -0.72598571042387 1.01378741526568 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_DBDXCXT5 0.196368256330414 0.452809141173327 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_DEHJF4C7 1.316195429649 1.1077694469438 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_DFWFBYSN -1.65447610760235 -0.835051348249805 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_DGTPWJ59 -0.909803661718546 -1.82995497385202 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_DHA5FMVW -0.292017611557012 -0.983186378681404 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_DMZP9G1H -0.314815147863089 1.77177521468653 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_DPF1CX0G 0.696786440326467 0.802319556181955 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_DSS3S5XD -0.0930271978254758 0.375360235641504 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_DV86M0Y7 1.21250870624814 1.22784245313785 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_DVCQ8XDZ -0.360843548920479 1.83314329782412 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 52 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_DY88N5ZT -0.0502479381703337 2.50991579073885 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_E0N3PTPN 2.5334102341991 1.10662924541603 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_E1CGF3KV 0.995820212623824 1.05515708313422 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_E2Z940S4 3.31121277272587 -3.31817969772348 NA NA differentially expressed differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_E3BAT4C1 -1.55663535833827 -3.04859876305648 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_E4GC9EXR 0.216184082645836 0.643538379748359 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_E4QK839R -0.751683309462311 0.932505496022385 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_E60JZ9Z3 -0.700468446899135 0.285784003193869 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_E94QRJDW 1.12121867810094 0.882295951215204 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_EF775B3K -0.0930271978254758 1.65402222387187 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_EFE4YEK3 -1.82363196189447 -1.24438619058378 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_EFEZB0ZH 0.274991754670431 0.306056768526571 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_EHVYJAVA 0.389828513152717 0.522131606365857 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_EJ9JKM1C -1.85842835307473 -0.607487610280926 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_EK5PCKY0 2.23974618248848 -2.39193598490033 NA NA differentially expressed differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_EMYET8F4 -0.0290455741336873 0.588873298921981 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_EN2VK7NY 0.74836454100291 0.270684638831952 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ERJAJ0KA 2.89135754754467 0.223700629053686 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ERWT0ZWE -1.72119715626458 -0.208266554900043 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ET8CJXSF -0.314815147863089 1.22162471799745 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_EXGBH3TD 3.88016159942815 0.864835496234639 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_EYSS0ZDS -0.202230453912645 1.6147754363513 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_EYYMKWB7 -1.49284082502907 1.82484632225254 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_F4E8R9VY -0.337756518157034 0.513273854764074 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_F6V1Y4QS -1.16067520501373 0.413299111110071 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_F6Z5HFWH 0.995820212623824 -0.949853666580203 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_F8N6CFQE 0.501149302822085 0.605972626514666 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_FAQQ0GCQ 1.58357970793554 0.655586239469015 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_FBJ5Q54N -1.85842835307473 1.7786118068668 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_FCAKKZ20 -1.89356094647703 -0.670111606734921 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_FEPRNEXX -1.55663535833827 1.80982672137706 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_FEV5A0HN -1.65447610760235 1.63770440338546 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_FJWZ3M7V 0.274991754670431 0.942978136191542 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_FJZPQZ2C -0.575500988964733 1.19481810722847 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 52 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_FQX1PRAJ 1.27211979751414 -0.595977831764639 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_FRZ76GEG -0.454686050872541 0.484509022149195 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_FW5ECXXK 1.01173356463001 0.974708158237359 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_FWMJPKCV -1.04703485852869 -0.0465054135025164 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_G00FHF3Q -1.62156913975889 -1.69658757881027 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_G23JJAZY 1.69053433407262 2.17141197209518 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_G3RJTBZD 2.31818794830829 0.371797986580212 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_G5QBBHDV 2.62625430259925 1.77155771394066 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_G7AGNB5G 2.62625430259925 0.229821118869356 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_G9XE3N9T -0.551014733942681 1.53473761836586 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GCA4GET3 -0.751683309462311 1.10075283355099 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GCQFGDTX -1.85842835307473 0.0686115876529316 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GE2RVZE6 -1.89356094647703 -1.43004772134808 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GG9W3J9Y 1.15190405117247 0.88117504660258 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GHNJ4CYC -0.624973794708382 0.37358007551944 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GJNCYABP -0.180125856175574 0.53417595158096 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GMDQK06Q 0.216184082645836 1.6981642885114 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 69 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GMJBGBWB -0.314815147863089 1.55533224944473 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GNV89A5P -1.65447610760235 -1.94148851054091 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GPEGRCCT 0.351951138051122 0.811313642948519 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GR46VD0Q -0.675129005470426 0.430102496954166 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GS1KR5PK -1.2482986047068 1.13905884749853 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GSVCN2XC -0.551014733942681 -2.69920715401069 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GTZCFGRZ 2.37319951388883 1.26333051849778 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GV3NZ9QD -0.99151935072161 0.740389772851292 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 59 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GW0GKWMS 1.5426464974771 1.03689890520839 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GWCRMKE6 0.0338296834457221 1.73515916006335 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GYA4V1RD -0.114607054219569 1.00739603993797 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_GYXSDZ56 -0.551014733942681 1.84098163182343 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 57 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_H0QWRJE2 0.0956361878563642 2.18313953072289 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_H1ZS5FMZ 1.56998643928314 0.860867027210316 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_H3FE3TH9 0.995820212623824 0.316627117491975 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_H4B5Y6S0 -1.89356094647703 -1.17574820355542 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_H8A9PSYA -0.909803661718546 0.219514470932514 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_HA20Y4XY 0.216184082645836 0.385748372486086 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_HC44ZA0V -0.526692267805133 1.66508228045598 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_HC5M8JTC 0.464419746789818 0.648066675417231 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 50 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_HCP5C912 -0.202230453912645 1.4870791090584 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_HD4EJYE3 -1.55663535833827 -1.44535486429386 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_HF3RNN2T -1.52459818959711 -0.754298963448661 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_HHPA8NJ2 -1.36851435104847 0.8923498646186 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_HQ5BJ6MW 0.573513783229015 0.544528224194817 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_HSHN8PBB -0.136315746340283 0.955529362984464 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_HV8PFRBR -0.675129005470426 1.13441923754485 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_HX0S30NE 1.43118351341034 0.23370415084681 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_HZ707C55 -0.202230453912645 0.487598184119679 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_HZE3KYZ1 -1.49284082502907 0.187061642610937 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_HZRM07TW -1.68768359985856 -0.551174037012767 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_J1AB8PMA -0.624973794708382 -0.252716745878256 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_J483EMFP -0.751683309462311 -0.0610227771751103 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_J60G8DMK -1.39919972412 -1.26148699589368 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_J6VKB1VE 2.90081449729622 0.799965161451498 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_J71N7D09 1.04335285195603 1.67075799940626 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_J8G4SH4Z -1.58895730564635 -1.75587214556085 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_J8VX4D17 -0.600153253762871 0.556410258807313 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JCPKYHKY -0.551014733942681 -0.0139803148903875 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JFR750KD 1.624057251671 0.661150030435081 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 44 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JH29M4KG 0.765395931061703 0.972764959792405 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JHGW42S6 -0.0930271978254758 0.858405548791634 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JKXA3FQC 0.274991754670431 1.06654985185844 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JMHG7GCN -0.407462073747548 1.00288989838528 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JSPR854S -0.0290455741336873 -0.705525470523375 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JT82QGXF -1.43014625244211 -1.79534781577615 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JTMXAMB7 -1.21885556829358 -0.808212879593286 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JVA2NQFF -0.600153253762871 0.553219684309339 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JWSR581E 1.24243640712457 0.344573363184715 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JX449BF5 -1.13193042978938 -0.664840765511057 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JX7S9MY7 -0.360843548920479 0.659226231951874 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JXF8A2A6 -1.36851435104847 -3.10246158215079 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JXNZYGCR 1.48734208340494 0.403583840926584 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JZRM1S3T -1.96486117464323 -2.26565888311568 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_K17VQECG 1.37414398882143 0.738148842670324 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_K2FHZGTK 1.316195429649 -0.6162892288408 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_K2VYFVKZ 0.136264489075611 0.850427809765432 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_K3ER45RV -1.92903630229932 -3.03641544336369 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_K5802F84 0.370939145323731 0.934496817273529 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_K7MVS0Z7 1.47338354369224 0.12046621048391 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_K81DR8XG -0.624973794708382 0.269058597534973 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KDSTG5YY -1.33808576235117 -0.25905918105874 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KEA474HN -0.180125856175574 0.305526463625014 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KK5C8VCK -0.751683309462311 -1.34903892529129 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KM2EX0K6 3.03979428520996 0.689950138862262 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KN92S7YQ -0.777563811100314 -1.76892571120592 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KPT2WPHW -0.2244702488065 1.56645793316159 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KQ6ZW085 -0.478530038802957 1.58300660909277 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KSKZ9J7J 0.11600708219861 -0.592769475037234 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KVAJYZ6F 0.865942294618584 0.0513696709150773 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KVV7001W 1.13659373326975 0.121356301948548 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KX6J8TRK 0.0338296834457221 0.930149003825249 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KXCY5BN5 -1.68768359985856 -1.0574067239818 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KXH37MPN 1.84528939675051 0.958741399535621 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KXMYBQ6N -0.526692267805133 1.16316501394728 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KYF0Q0E7 -1.85842835307473 0.918315631460946 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KZPR01BD 0.573513783229015 2.04607572479614 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_M026T44Q -1.39919972412 0.403583840926584 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_M0QYNVK8 1.2868711164463 0.783191009913265 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_M15PW2N0 -1.72119715626458 0.606193530502364 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_M1PVEHCM 0.0751505273067822 2.21641855169033 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_M1T1K5WV -1.52459818959711 -2.37425774253661 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_M4NVX721 -0.99151935072161 1.59733624752471 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 37 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_M4TTKPNR -0.0502479381703337 0.970642485290399 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_M7QJ8VF0 -1.21885556829358 -0.0114058817481687 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_M85CXHDV -0.72598571042387 0.852901247479905 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_M86ECPHK -1.65447610760235 -4.24461620938974 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_M8M56Z4Y -0.269362116897465 1.11167271934929 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_MA2T7ET1 -1.46135841944862 3.27628925667564 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_MB7WN0ZB 0.62685745574391 -0.304154538029433 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_MBSTWZA6 -0.829884068148321 0.163234805997183 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_MD3DT41J 0.408620261074053 0.437950961058709 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_MDBT7S5Z 1.56998643928314 0.501781146147449 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ME3HKN2C -0.751683309462311 1.45522505241025 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_MF47B9ZW -0.675129005470426 2.05525398878111 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_MF9X3PKH 0.408620261074053 0.948189555847963 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_MKM0EEN1 1.87045347731835 0.542462975825604 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_MKP2Y41Z -0.292017611557012 0.535098796681861 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_MM20BVW9 -0.246846904837802 1.16379464000069 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_MMNRZ1EQ -1.27798199509637 -0.61814821817454 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_MN5XVP5A 1.34528514583361 -0.356856326021482 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_MV6ASWV9 -1.78916539928987 0.308176279951239 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_MVW01FPB -1.58895730564635 1.00097973114136 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_MWWZBQ60 1.04335285195603 0.396322281060841 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_MY9D8XZ1 -0.856329240201287 0.437216756461472 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_N0877CX1 -0.964076238346258 1.17836590742479 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_N1E0H8YQ -0.0502479381703337 -0.309542088221264 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_N5B2CZMH 1.1974519761222 0.774240830174774 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_N5DVEJXT 1.67733578916462 -3.27318038680601 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_N6NE6B3W -0.551014733942681 1.91618170842311 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_N8J1DP02 -1.52459818959711 0.592218308490506 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NB5XWMJT -1.0191711579706 1.65868815788886 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 87 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NDC69214 0.537511557141385 0.22342188307591 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NDN62H0S -1.49284082502907 1.00410430532464 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NFRXNAFE -0.430997399470754 1.35788435579077 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NH7K4CD9 3.1648845854994 0.562092364361683 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NKRYMHEP -1.58895730564635 -1.24779215708967 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NNPEC7W1 3.41106879958623 2.07671375753027 NA NA differentially expressed differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NPQJ20KX 2.41661728501745 0.848903843348381 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NQB91P48 1.63745025071577 0.0606288845483663 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NR3P3GN2 0.501149302822085 0.308441026935785 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NRFQEQKP -0.202230453912645 0.880801241910532 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NRPG5K4K -0.99151935072161 1.18132701801005 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 105 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NT9NZYFD 0.609163040633391 0.603098171485381 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NVKGSMXS -1.58895730564635 2.04119039860456 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NYS8TRCB 0.235892505581303 1.23990735695626 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NZ71XCG3 -1.30790969597279 -0.641093014839384 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_P277RYX5 -0.337756518157034 0.23425812210093 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_P39SQPTS -1.75502247115923 0.589542845293096 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_P44PE00R -1.46135841944862 2.44975073124797 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_P4D8Y3S8 -0.0715746569591287 -3.11726963647363 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_P4NX9MPA 0.915191739992994 1.40612067615035 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_P78SMRBS -0.649964924902585 0.937750151464247 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_PEP9NZXN 0.963783043882665 0.349744694714004 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_PGHK1JRW 0.464419746789818 0.160340663709099 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_PJPGVD62 0.351951138051122 -0.01720403336251 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_PK18H7E7 2.00582662854395 0.886399411501397 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_PKW05VZV -0.964076238346258 1.74070934633147 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_PN2CE34A 3.30276632263329 -0.263550965292294 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_PQ6QEVE8 -1.16067520501373 1.46311540401645 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_PQ7CQFYR -0.180125856175574 1.15843512004936 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_PQVTB6BB 2.91024691537365 0.24941967002048 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_PRAEF32W 0.176443849602905 1.15068025446738 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_PSW27ZTE -0.551014733942681 0.955350732450709 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_PZVHMSYN 2.21701988894791 1.02906030050995 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_Q3TBCK4V 0.464419746789818 0.232318405851254 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_Q5WZYWCT -1.16067520501373 1.66531432625743 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_Q79NP5YY 0.294384841331846 0.652582538017046 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_Q9V7A95C -0.407462073747548 0.00809277804637612 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QAG1RDXN -0.551014733942681 1.34468479549413 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QB7YGKN1 0.714060558941129 -0.184517972950284 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QB84TBA3 5.18214806064248 1.77611920040861 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QC3XCE6X -1.0191711579706 1.21401016440648 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QEYPFYHD -1.72119715626458 -1.34758917584711 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QF5VVZX5 -0.99151935072161 1.78164119450536 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QHS3V0GP 2.50192782861865 0.398829890386238 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QNAQGAV6 -0.292017611557012 1.5781206325685 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 61 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QP6MSKRE -1.46135841944862 -0.533412086445458 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QPPPGYP4 -0.964076238346258 -1.60426980379542 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QRDT19KS -1.21885556829358 -1.29552930564716 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QRNSKFMS 0.519375882989024 0.948727726972773 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QSTAVWGE -1.62156913975889 2.90162350614165 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QT3NZ2YZ 4.18450756424059 -0.428616097245712 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QTSXW7DA 0.573513783229015 0.664351369221544 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QV51J756 -0.0930271978254758 1.76785579382299 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QWNBZ9RJ -1.43014625244211 1.4560157931168 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QWTE1CWR 0.555557227577704 0.130525817610304 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QX12J6W1 -0.526692267805133 2.33825952503876 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QXKRN6CR -0.0715746569591287 1.07421221829375 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_QYPHA40N -1.13193042978938 0.341462741665699 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_R244Z0WX 2.42739120439546 1.38107650656174 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_R634WKN7 0.0751505273067822 1.03740882325245 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_R6WNEEE4 -1.52459818959711 -0.18773629460795 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_R7HZCZ8B 0.196368256330414 1.732599771524 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 136 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_RB2S0KDF 4.8717130599273 2.41511260890404 NA NA differentially expressed differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_RCC8BXVE -1.92903630229932 1.36346921901066 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_RCCN63K6 2.29594815341444 0.225372113585685 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_RCFQ31XF -0.624973794708382 1.25397144883395 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_RD4D5F9F -1.39919972412 -1.10048133121241 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_RFMQ7T0T -0.99151935072161 -0.447789672044125 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_RGPSEMHC 1.01173356463001 0.998371377307282 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_RGSMX7QD -0.856329240201287 1.14782232040697 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_RHD7XPNP -0.360843548920479 0.71039492044044 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_RSRPX3S8 -0.478530038802957 -1.18294334209999 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_RWJZFTP9 0.537511557141385 -0.541381235678651 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_RXN5T5YT 0.216184082645836 -0.316494971164216 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_S0175QKX -1.85842835307473 -0.895574258027591 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_S1KK7XRH 0.661990049146207 1.13024843100023 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_S1M423AB -0.964076238346258 -2.22069734158154 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_S2TA8R29 0.136264489075611 1.71085192987319 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 41 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_S458NMKH -0.00796612304277741 1.45667445342672 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 56 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_S4V9E1XJ 0.445914897031286 0.813067617371676 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_S50KQEXV 0.832734802362381 0.674130132593959 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_S5P8VTN5 1.16715017468167 1.3938515220817 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_S69QZAJR -1.46135841944862 0.367717375058176 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_S6NJRR5W 0.389828513152717 0.592886494824267 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_S71RJ8DH -1.46135841944862 0.909705842909755 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_S7CZY2CH -0.803629837630822 1.6693698373 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_S9929Z8B 1.79443269179707 1.07736672106466 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_SBFNFZ8B -0.856329240201287 2.06474536049554 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_SDA4RMMG -0.675129005470426 0.951953060992828 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_SDZY6RZ3 0.389828513152717 1.03434694094478 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_SFKZSJN1 -1.16067520501373 1.70089132024566 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 83 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_SHMC4902 1.02757757719187 0.434767038049218 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_SKGJ5SY9 -1.55663535833827 -1.00598570763717 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_SM8VQFPD 1.8199499553218 1.78174928379255 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_SQX5E15Z 1.24243640712457 0.60884206672353 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_SXCZ3CXN 0.48283090070517 -0.474843327690515 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_SXRS2P6T 1.80721370716986 0.494704952938218 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_T0RKFEKR 0.464419746789818 0.800946568866458 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_T1DVKKJB 2.27357149738314 1.04959966822703 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_T1W4JA94 0.832734802362381 0.495413943812591 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_T1YHK6B7 2.69686225182384 1.56707382556269 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_T2QPMZCM -0.803629837630822 1.75032224766718 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_T3H5AY8A -1.10341110610305 0.252435280002239 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_T4JFN54G -1.43014625244211 0.517242431076679 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_T4P3J13C -1.33808576235117 0.790908630387652 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_T55Y4Z0Y -0.99151935072161 2.00365551940727 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 41 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_TA9WP4TH -1.36851435104847 -1.60173097030248 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_TAHV8N04 3.05792995936232 -1.01129227819898 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_TBWYAFSM -1.85842835307473 2.19931826676426 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_TCGEZJ5F 1.1974519761222 1.93292902394617 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_TD1ZEQ7R -1.2482986047068 1.48966294532608 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_TDEFAPNH -0.751683309462311 1.15590693718948 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_TG93XC55 -0.00796612304277741 2.07942174448402 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_TGS109T3 0.799221245956355 1.06705066098829 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_TK84K675 2.89135754754467 0.889935088839744 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_TM9MH0RP -0.454686050872541 2.28985485952531 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 80 1 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_TMTV769C -0.624973794708382 1.35157863316122 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_TRKH2SPE 2.20560325435785 0.295151195111048 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_TV5B86ZD -0.777563811100314 0.999241288280083 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_TXY8QYWA -0.00796612304277741 0.481890576409494 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_TXZ7KHTQ 0.555557227577704 1.72880901729108 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_TYAYZ9ZW -1.43014625244211 -2.30408915101155 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_V0Q1G94N 1.04335285195603 0.939915471322266 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_V3REENH9 0.882433003744091 1.18738843615122 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_V3Z3DB4N -1.30790969597279 0.869735609471351 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_V4W81SFC -1.49284082502907 -0.0379868174506831 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_V72GX2AZ 0.609163040633391 1.24680481162175 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_V7BJM89K 2.95704543946466 1.4627217841419 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 121 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_V89HGTET 1.05905998277232 0.759013496596987 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_V96WVE3Z -1.78916539928987 0.947471720315376 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_V9HVBBDW -1.65447610760235 -0.136636867632813 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VA5T4KAA -1.72119715626458 -0.417876918814331 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VARR255N -0.269362116897465 1.33832816554317 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VF5XWFXD 1.13659373326975 0.762230987561543 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VJVDJABP -1.82363196189447 -0.695259557154343 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VMEX27TN -1.75502247115923 -1.46469132775555 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VMMJYN8Z -0.246846904837802 1.82737135155359 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 151 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VNE0ZPBS -0.00796612304277741 1.44092632362792 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VNK9XYV9 -0.246846904837802 -1.29693386648225 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VNWKNRY4 -1.65447610760235 0.608180332400409 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VP5Y45Z7 0.408620261074053 0.863324827345033 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VPBMDMQX 0.609163040633391 0.12757349113471 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VPMKHW9X 0.176443849602905 2.03443770687916 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VR7FR1NE 0.696786440326467 1.08778330880405 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VT6C6N6K -1.82363196189447 -1.36214449772322 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VTJ9ESSV 1.15190405117247 0.151627555015228 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VVFBW0YH -0.337756518157034 -0.781805332136291 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VVTHDRBD 1.04335285195603 0.963014380431105 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VW85Q4XJ 0.765395931061703 1.51667793592297 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 68 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_VXEFKW5P 2.00582662854395 0.623551852116203 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_W18SF91A -0.136315746340283 1.12751563548858 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_W3R88RFP 1.96940366827826 1.88308155042839 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_W4DB5RP1 3.79253819973507 0.122542341760486 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_W4HGV6E7 0.832734802362381 1.10353042233458 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 71 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_W60RQAKK 5.28163977009402 0.529553943093341 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_W644VEVE -1.58895730564635 -0.754804182508979 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_W6AC5J3C -0.114607054219569 1.62800158874886 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 70 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_W7FP2G3F 0.0338296834457221 0.541084701467353 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_W97QQYKQ 1.13659373326975 1.2153833882667 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_W9AT0MR7 -1.89356094647703 0.0308140384495702 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_W9N9844Q 0.731253002931069 -0.520653568944597 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WAXJY4XQ 0.294384841331846 0.671797016332298 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WCRKYV0T -0.72598571042387 2.09932346556598 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WE3Q8A73 -1.62156913975889 -0.961271557890411 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WFD0GE5X -0.882968151505165 1.07603924670856 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WG203ECV -0.964076238346258 0.83204634938438 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WGK8ZMVA -1.33808576235117 -0.0796867010013092 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WH5HDE0A -1.62156913975889 1.09829811844742 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WH8G4VFB 3.17365707498919 -0.0126925946148357 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WJ9H4NZZ 1.13659373326975 0.362089952144717 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WKESC3XN 2.07759596751614 0.70728204214464 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WMEHNDSK -1.36851435104847 0.47305235840921 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WRHDP7WF -1.30790969597279 -0.32620077436763 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 20 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WSQMAA33 -1.07511372492784 -3.60323163447463 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WV0S8N4M -1.49284082502907 0.432804632879284 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WVW3W6ZB -1.82363196189447 1.7599888203491 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WWKNJSJ5 1.2868711164463 -0.879143145970277 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WYERXS4G 0.714060558941129 0.0603210824256509 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_WYG77VVP 0.979836911592852 0.576999481254237 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_X0F9AYEC -1.43014625244211 1.39083842322632 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_X16PENSA -0.269362116897465 1.11021007751174 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_X4X1SFSE 1.34528514583361 1.92284159258643 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_X59HSFGG 0.731253002931069 1.33365097327908 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_X67GTEM6 -0.803629837630822 -0.226122560842469 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_X91K8KMG 0.644466183278461 -0.459993253296089 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_XBQZYS8G -1.33808576235117 1.77057860449339 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_XF0ZX2B3 1.33076937753506 0.420238955321484 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_XGSA3GQE -0.649964924902585 0.715156587139983 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_XJTW0P8P -0.00796612304277741 2.49008088618485 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 72 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_XKKB4MZV 2.52294635610075 0.164679969641633 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_XQ5SFW35 1.16715017468167 0.26743094709246 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_XQYHPBFS 1.30156283392735 -0.965286619854837 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_Y0PCBNJV -0.0290455741336873 0.641593858570612 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_Y3G1X98S 0.445914897031286 0.891235793247534 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_Y7F9E2E9 0.11600708219861 0.538094472227084 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_Y8D1F5WW -1.46135841944862 -1.92493752168796 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_YA8RBGD8 0.555557227577704 0.526774490572261 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_YB2RXRHT -0.38407810164795 1.57211546280668 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_YCREDZTJ -0.99151935072161 1.28613261876932 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_YE1MAQYJ -0.454686050872541 0.363114553104767 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_YEQVW4ND -1.0191711579706 1.42623388629879 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_YEW22W35 -0.337756518157034 -0.0643401252902913 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_YG0A13JH 0.731253002931069 0.550708455142578 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_YMAJC22S 3.1028773194318 0.901419978343155 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_YNEQJ6AH 3.40285140596503 -0.0360272374278611 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_YVMEEBKC 1.51509943292605 0.48403325106172 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_YY5B2XDD -0.649964924902585 0.11124028205414 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_YZ2Z1Q6Y 2.05382990167061 0.589096511331623 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_Z0AVVB1V 3.05792995936232 0.307646658102216 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_Z1A875MW -0.526692267805133 1.504953406289 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_Z45HD492 -1.89356094647703 -0.303386326601206 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_Z6BWR941 0.0129918319781595 1.10009860098949 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_Z6MC4N8D 0.696786440326467 0.635963404541878 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_Z7Y2466H 1.71678856459012 0.761025165925472 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_Z8YZ6QGS 1.69053433407262 0.987896398871931 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ZF34SJGN -0.38407810164795 -1.87826068815873 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ZH1FBX50 -0.856329240201287 1.82989251033493 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ZJZXDPTP 1.9937261344158 1.12671100720683 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ZR96A4FH 0.445914897031286 1.2405082852194 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ZRM0W01M -0.936838694285395 1.34736134716363 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ZV1P6W9C 2.07759596751614 1.97093799446146 NA NA differentially expressed no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ZV68CES9 -1.62156913975889 0.466572741474784 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ZV9Z3SY6 1.61061474050239 0.603540722446731 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ZVWE73JZ 1.84528939675051 1.72579247620001 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ZVZDDW2G -1.36851435104847 0.541314494082177 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ZWR9W4FX -0.430997399470754 -1.32957431187138 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ZXYDSBM9 -1.65447610760235 -0.790044500964712 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ZZMYDZJW -0.202230453912645 0.0914238900770306 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ZZPBANDD -0.136315746340283 1.22980903219882 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ZZWMD6FA -0.502531413931434 2.01860396386615 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 57 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRP12--LINC00865(3360)/AL138924.1(9685) BS_84XCR9GG 0.656077313195552 -1.22420805460071 NA NA no change no change NA NA 10:97379332 10:89844221 ARRIBA frameshift 3 1 medium [],deletion RRP12 NA LINC00865 AL138924.1 NA NA NA NA NA -RSBN1L--GSAP BS_64HCD9K3 3.48558244404309 -2.43153626812424 NA NA differentially expressed differentially expressed NA NA 7:77758078 7:77379052 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr7:0.28Mb]],duplication/5'-5' RSBN1L NA GSAP NA NA NA NA NA NA -RSF1--AP001978.1(120374)/AP001541.1(234131) BS_2A162JH9 4.43054698783958 NA NA NA differentially expressed NA NA NA 11:77672042 11:79732674 ARRIBA frameshift 3 3 high [],inversion RSF1 NA AP001978.1 AP001541.1 Oncogene NA NA NA NA -RSF1--AP001978.1(120374)/AP001541.1(234131) BS_BWBDH9GM 4.50786093093775 NA NA NA differentially expressed NA NA NA 11:77672042 11:79732674 ARRIBA frameshift 8 1 high [],inversion RSF1 NA AP001978.1 AP001541.1 Oncogene NA NA NA NA -RSF1--AP001978.1(162955)/AP001541.1(191550) BS_BWBDH9GM 4.50786093093775 NA NA NA differentially expressed NA NA NA 11:77672042 11:79775255 ARRIBA frameshift 3 0 high [],inversion RSF1 NA AP001978.1 AP001541.1 Oncogene NA NA NA NA -RSF1--CFH(12888)/CFHR3(14403) BS_WKESC3XN 4.55836929647326 -0.458018519525433 NA 9.61740418084933 differentially expressed no change NA differentially expressed 11:77688827 1:196760392 ARRIBA frameshift 4 0 medium [],translocation RSF1 NA CFH CFHR3 Oncogene NA NA NA NA -RSF1--TENM4 BS_V3Z3DB4N 4.51414190223587 5.14771496455627 NA NA differentially expressed differentially expressed NA NA 11:77820528 11:79215909 ARRIBA frameshift 4 0 high [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr11:0.83Mb]],duplication RSF1 NA TENM4 NA Oncogene NA NA NA NA -RSPH9--STK38(24602)/SRSF3(22281) BS_6JHXXVR7 0.788879680211186 0.558271630354365 NA 0.973742412189864 no change no change NA no change 6:43670918 6:36572072 ARRIBA other 43 0 low [],inversion RSPH9 NA STK38 SRSF3 NA Kinase NA CosmicCensus, Oncogene NA -RSPH9--STK38(24602)/SRSF3(22281) BS_KE56MMY0 0.659893481022211 0.838470054697739 NA 1.14627149877313 no change no change NA no change 6:43670918 6:36572072 ARRIBA other 21 0 low [],inversion RSPH9 NA STK38 SRSF3 NA Kinase NA CosmicCensus, Oncogene NA -RSPRY1--SNAPC3 BS_VJ2S5DVS 3.08339396381586 0.694601976835736 NA NA differentially expressed no change NA NA 16:57186451 9:15444602 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr9]],translocation RSPRY1 NA SNAPC3 NA NA Oncogene NA NA NA -RSPRY1--SNAPC3 BS_VJ2S5DVS 3.08339396381586 0.694601976835736 NA NA differentially expressed no change NA NA 16:57186785 9:15444602 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr9]],translocation RSPRY1 NA SNAPC3 NA NA Oncogene NA NA NA -RSRC1--CLRN1 BS_1D6PZNKN 0.422819582512974 6.20169210990994 NA NA no change differentially expressed NA NA 3:158123991 3:150941761 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr3:7.13Mb]],inversion RSRC1 NA CLRN1 NA NA NA NA NA NA -RSRC1--FNDC3B BS_1D6PZNKN 0.422819582512974 9.1559344777002 NA NA no change differentially expressed NA NA 3:158203245 3:172247533 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr3:13.49Mb]],deletion RSRC1 NA FNDC3B NA NA NA NA NA NA -RSRC1--FNDC3B BS_1D6PZNKN 0.422819582512974 9.1559344777002 NA NA no change differentially expressed NA NA 3:158203245 3:172384668 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:13.49Mb]],inversion/3'-3' RSRC1 NA FNDC3B NA NA NA NA NA NA -RSRC2--LINC02384 BS_X23724NJ -0.48092872096188 NA NA NA no change NA NA NA 12:122526848 12:68451552 ARRIBA frameshift 17 0 medium [INTRACHROMOSOMAL[chr12:54.05Mb]],deletion RSRC2 NA LINC02384 NA NA NA NA NA NA -RSRC2--LINC02384 BS_X23724NJ -0.48092872096188 NA NA NA no change NA NA NA 12:122526848 12:68442141 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr12:54.05Mb]],deletion RSRC2 NA LINC02384 NA NA NA NA NA NA -RSRC2--RPSAP12 BS_X23724NJ -0.48092872096188 NA NA NA no change NA NA NA 12:122526848 12:68554012 ARRIBA frameshift 9 0 medium [INTRACHROMOSOMAL[chr12:53.95Mb]],deletion RSRC2 NA RPSAP12 NA NA NA NA NA NA -RTFDC1--MFSD14B BS_FCAKKZ20 -1.00217742274922 NA NA NA no change NA NA NA 20:56484189 9:94451456 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr20--chr9]],translocation RTFDC1 NA MFSD14B NA NA NA NA NA NA -RTKN--NDUFA10 BS_RRAEQZ97 1.79469352396066 -1.08345787414709 NA NA no change no change NA NA 2:74432588 2:239968415 ARRIBA frameshift 18 2 medium [INTRACHROMOSOMAL[chr2:165.45Mb]],duplication RTKN NA NDUFA10 NA NA NA NA NA NA -RTKN2--RN7SL591P(4350)/ZNF365(19545) BS_8T7DZV2F 3.23344146199604 -0.477529656403699 NA -3.09653138960227 differentially expressed no change NA differentially expressed 10:62268551 10:62354647 ARRIBA frameshift 6 0 medium [],duplication RTKN2 NA RN7SL591P ZNF365 NA NA NA TranscriptionFactor NA -RTL10--AC005381.1 BS_K17VQECG NA NA NA NA NA NA NA NA 22:19854443 19:28466780 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr22--chr19]],translocation RTL10 NA AC005381.1 NA NA NA NA NA NA -RTL10--AC005394.2 BS_K17VQECG NA NA NA NA NA NA NA NA 22:19854443 19:28466780 ARRIBA other 5 0 medium [],translocation RTL10 NA AC005394.2 NA NA NA NA NA NA -RTN3--AC024405.1(3279991)/OR4C50P(889173) BS_SXCZ3CXN -2.03221701055475 NA NA -0.0678142842492893 differentially expressed NA NA no change 11:63759461 11:53702307 ARRIBA other 3 0 medium [],duplication RTN3 NA AC024405.1 OR4C50P NA NA NA NA NA -RTN3--ATM BS_CZ3NA7KV -1.93430254384063 2.20235699562485 NA NA no change differentially expressed NA NA 11:63681778 11:108227595 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr11:44.46Mb]],deletion RTN3 NA ATM NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -RTN3--RNA5-8SP4(13710)/ZNF254(15188) BS_8NY9J9NQ -2.76061663832282 NA NA 1.62727459379096 differentially expressed NA NA no change 11:63741304 19:24018217 ARRIBA frameshift 1 4 medium [],translocation RTN3 NA RNA5-8SP4 ZNF254 NA NA NA TranscriptionFactor NA -RTN4--FBXO36 BS_RRAEQZ97 -1.55157572210413 1.10144751492535 NA NA no change no change NA NA 2:54987491 2:229976241 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:174.81Mb]],inversion RTN4 NA FBXO36 NA TumorSuppressorGene, Oncogene NA NA NA NA -RTN4RL1--SMG6 BS_7ZV3DPGT 2.40678096850519 0.335339595340982 NA NA differentially expressed no change NA NA 17:2024853 17:2085901 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr17:0.03Mb],LOCAL_REARRANGEMENT:-:[34494]],duplication RTN4RL1 NA SMG6 NA NA Oncogene NA NA NA -RUFY1--AC136628.3(293)/RUFY1(22752) BS_8J3B6ZB6 1.02189642921992 NA NA 1.02189642921992 no change NA NA no change 5:179589647 5:179527806 ARRIBA frameshift 28 2 high [],duplication RUFY1 NA AC136628.3 RUFY1 NA NA NA NA NA -RUNDC3B--RUNDC3B BS_ZR96A4FH -0.081394325822437 -0.081394325822437 NA NA no change no change NA NA 7:87777955 7:87739791 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing RUNDC3B NA RUNDC3B NA NA NA NA NA NA -RUNX1--CNTNAP2 BS_40MP5BWR 7.9403139973535 -2.82191397549039 NA NA differentially expressed differentially expressed NA NA 21:34799301 7:147396398 ARRIBA frameshift 39 8 high [INTERCHROMOSOMAL[chr21--chr7]],translocation/5'-5' RUNX1 NA CNTNAP2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA -RXFP1--RXFP1 BS_1T19NFJ8 1.50168603682101 1.50168603682101 NA NA no change no change NA NA 4:158617205 4:158607972 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA -RXFP1--RXFP1 BS_92VDQ0NE 1.21171767019247 1.21171767019247 NA NA no change no change NA NA 4:158617205 4:158607972 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA -RXFP1--RXFP1 BS_AMQGM1V9 1.44895948236512 1.44895948236512 NA NA no change no change NA NA 4:158617205 4:158607972 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA -RXFP1--RXFP1 BS_DVCQ8XDZ 2.1955164789136 2.1955164789136 NA NA differentially expressed differentially expressed NA NA 4:158648717 4:158607972 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA -RXFP1--RXFP1 BS_HCP5C912 1.42049923427695 1.42049923427695 NA NA no change no change NA NA 4:158617205 4:158607972 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA -RXFP1--RXFP1 BS_K5802F84 0.87002963220734 0.87002963220734 NA NA no change no change NA NA 4:158617205 4:158607972 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA -RXFP1--RXFP1 BS_QC3XCE6X 1.42049923427695 1.42049923427695 NA NA no change no change NA NA 4:158617205 4:158607972 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA -RXFP1--RXFP1 BS_TG93XC55 1.48184100423089 1.48184100423089 NA NA no change no change NA NA 4:158617205 4:158607972 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA -RXFP1--RXFP1 BS_ZR96A4FH 1.18398156284057 1.18398156284057 NA NA no change no change NA NA 4:158617205 4:158607972 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA -RXRA--EPHB2 BS_W36RZSFA -0.202736735635646 3.30371915591417 NA NA no change differentially expressed NA NA 9:134326659 1:22889574 ARRIBA frameshift 24 1 high [INTERCHROMOSOMAL[chr9--chr1]],translocation/5'-5' RXRA NA EPHB2 NA TranscriptionFactor Kinase, TumorSuppressorGene, Kinase NA NA NA -RXRA--KDM4C BS_A0DYVX9J 2.08644933112556 1.69501395012742 NA NA differentially expressed no change NA NA 9:134429240 9:7046862 ARRIBA frameshift 63 18 high [INTRACHROMOSOMAL[chr9:127.14Mb]],duplication RXRA NA KDM4C NA TranscriptionFactor Oncogene NA NA NA -RXRA--KDM4C BS_A0DYVX9J 2.08644933112556 1.69501395012742 NA NA differentially expressed no change NA NA 9:134421805 9:7046862 ARRIBA frameshift 7 6 high [INTRACHROMOSOMAL[chr9:127.14Mb]],duplication RXRA NA KDM4C NA TranscriptionFactor Oncogene NA NA NA -RXRA--KDM4C BS_A0DYVX9J 2.08644933112556 1.69501395012742 NA NA differentially expressed no change NA NA 9:134429240 9:7103685 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr9:127.14Mb]],duplication RXRA NA KDM4C NA TranscriptionFactor Oncogene NA NA NA -RXRA--KDM4C BS_A0DYVX9J 2.08644933112556 1.69501395012742 NA NA differentially expressed no change NA NA 9:134421805 9:7103685 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:127.14Mb]],duplication RXRA NA KDM4C NA TranscriptionFactor Oncogene NA NA NA -S100B--SLC10A2(58120)/LINC01309(300234) BS_X23724NJ -0.415797815105481 -0.190765074785473 NA -0.0625293374938759 no change no change NA no change 21:46602278 13:103124966 ARRIBA frameshift 10 0 medium [],translocation S100B NA SLC10A2 LINC01309 Oncogene NA NA NA NA -SACM1L--ROBO1 BS_SFRQXM76 -1.33894347708631 1.23279068310831 NA NA no change no change NA NA 3:45709647 3:79457460 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr3:32.85Mb]],deletion/5'-5' SACM1L NA ROBO1 NA NA TumorSuppressorGene, Oncogene NA NA NA -SAE1--UNC13A BS_61E80SD6 -0.242058803434013 0.436217265738032 NA NA no change no change NA NA 19:47169923 19:17676041 ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr19:29.42Mb]],inversion SAE1 NA UNC13A NA NA NA NA NA NA -SAE1--UNC13A(7677)/MAP1S(23200) BS_61E80SD6 -0.242058803434013 0.436217265738032 NA 0.184621408308095 no change no change NA no change 19:47169923 19:17696042 ARRIBA frameshift 4 0 medium [],inversion SAE1 NA UNC13A MAP1S NA NA NA NA NA -SAFB--AC005394.2 BS_K17VQECG 0.537104828582588 NA NA NA no change NA NA NA 19:5626489 19:28722780 ARRIBA frameshift 1 1 low [],inversion SAFB NA AC005394.2 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA -SAFB--AC005524.1 BS_K17VQECG 0.537104828582588 NA NA NA no change NA NA NA 19:5626489 19:28722780 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr19:23.01Mb]],inversion SAFB NA AC005524.1 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA -SAFB--AC005524.1(8075)/MAN1A2P1(54960) BS_K17VQECG 0.537104828582588 NA NA 1.98587289758871 no change NA NA no change 19:5626489 19:28735852 ARRIBA frameshift 26 3 high [],inversion SAFB NA AC005524.1 MAN1A2P1 TumorSuppressorGene, TranscriptionFactor NA NA NA NA -SAFB2--HOOK2 BS_K17VQECG -0.320080365942364 0.252478366911188 NA NA no change no change NA NA 19:5609995 19:12843994 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr19:7.14Mb]],duplication SAFB2 NA HOOK2 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA -SAFB2--MAST1 BS_K17VQECG -0.320080365942364 -0.775925371738836 NA NA no change no change NA NA 19:5609995 19:12843994 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr19:7.21Mb]],duplication/5'-5' SAFB2 NA MAST1 NA TumorSuppressorGene, TranscriptionFactor Kinase, Kinase NA NA NA -SAMD12--AC100872.1(4232)/CDK5P1(61619) BS_HZE3KYZ1 2.70975186089982 NA NA NA differentially expressed NA NA NA 8:118379560 8:122707655 ARRIBA frameshift 5 0 high [],inversion SAMD12 NA AC100872.1 CDK5P1 NA NA NA NA NA -SAMD12--AC108136.1(162755)/LINC01151(17815) BS_HZE3KYZ1 2.70975186089982 NA NA 0.843913404410555 differentially expressed NA NA no change 8:118375618 8:122652570 ARRIBA other 9 0 medium [],inversion SAMD12 NA AC108136.1 LINC01151 NA NA NA NA NA -SAMD12--MYL12AP1 BS_HZRM07TW 0.259494743334313 1.60956602027705 NA NA no change no change NA NA 8:118580715 8:93864370 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr8:24.34Mb]],deletion/5'-5' SAMD12 NA MYL12AP1 NA NA NA NA NA NA -SAMD12--PDP1 BS_HZRM07TW 0.259494743334313 -0.00345330965533539 NA NA no change no change NA NA 8:118580715 8:93864370 ARRIBA frameshift 14 0 high [INTRACHROMOSOMAL[chr8:24.26Mb]],deletion/5'-5' SAMD12 NA PDP1 NA NA NA NA NA NA -SAMD3--SAMD3 BS_1G3WYEN3 1.81891875046422 1.81891875046422 NA NA no change no change NA NA 6:130288227 6:130313093 ARRIBA other 2 1 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA -SAMD3--SAMD3 BS_37GTVG4N 3.89443275762489 3.89443275762489 NA NA differentially expressed differentially expressed NA NA 6:130288227 6:130313093 ARRIBA other 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA -SAMD3--SAMD3 BS_3TQSE8HF 6.72255968175167 6.72255968175167 NA NA differentially expressed differentially expressed NA NA 6:130288227 6:130313093 ARRIBA other 6 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA -SAMD3--SAMD3 BS_B1HVNV0T 1.76499672924842 1.76499672924842 NA NA no change no change NA NA 6:130288227 6:130313093 ARRIBA other 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA -SAMD3--SAMD3 BS_B6M763JS 4.27473183077892 4.27473183077892 NA NA differentially expressed differentially expressed NA NA 6:130288227 6:130313093 ARRIBA other 8 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA -SAMD3--SAMD3 BS_CW9QV8AG 4.34328122619219 4.34328122619219 NA NA differentially expressed differentially expressed NA NA 6:130288227 6:130313093 ARRIBA other 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA -SAMD3--SAMD3 BS_HCP5C912 1.71016841326101 1.71016841326101 NA NA no change no change NA NA 6:130288227 6:130313093 ARRIBA other 6 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA -SAMD3--SAMD3 BS_M4NVX721 2.25619671418504 2.25619671418504 NA NA differentially expressed differentially expressed NA NA 6:130288227 6:130313093 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA -SAMD3--SAMD3 BS_P39SQPTS 3.47998592145484 3.47998592145484 NA NA differentially expressed differentially expressed NA NA 6:130288227 6:130313093 ARRIBA other 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA -SAMD3--SAMD3 BS_QWNBZ9RJ 3.83011551089678 3.83011551089678 NA NA differentially expressed differentially expressed NA NA 6:130288227 6:130313093 ARRIBA other 5 1 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA -SAMD8--POLE4 BS_GS1KR5PK 0.539104211143957 -1.73678750831486 NA NA no change no change NA NA 10:75164740 2:74966749 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr10--chr2]],translocation/5'-5' SAMD8 NA POLE4 NA NA NA NA NA NA -SAMHD1--EPB41L1 BS_7327SDAQ 2.18105287601425 -1.39220430390105 NA NA differentially expressed no change NA NA 20:36916722 20:36175551 ARRIBA in-frame 5 2 high [INTRACHROMOSOMAL[chr20:0.66Mb]],inversion SAMHD1 NA EPB41L1 NA NA NA NA NA NA -SAMHD1--EPB41L1 BS_7327SDAQ 2.18105287601425 -1.39220430390105 NA NA differentially expressed no change NA NA 20:36916722 20:36173764 ARRIBA frameshift 2 2 high [INTRACHROMOSOMAL[chr20:0.66Mb]],inversion SAMHD1 NA EPB41L1 NA NA NA NA NA NA -SAPCD2P4--YWHAEP1(2589)/VN1R40P(6621) BS_4QW2S1Q8 76.6868983857404 9.24995597100002 NA -0.444902266388127 differentially expressed differentially expressed NA no change 7:63113707 7:64437181 ARRIBA other 3 0 medium [],inversion SAPCD2P4 NA YWHAEP1 VN1R40P NA NA NA NA NA -SARNP--AL590824.1(25689)/FAM46A(908561) BS_VJ2S5DVS -1.3962679016493 NA NA 0.877969325070145 no change NA NA no change 12:55789075 6:80582878 ARRIBA frameshift 18 1 high [],translocation SARNP NA AL590824.1 FAM46A Oncogene NA NA NA NA -SARNP--AL590824.1(54976)/FAM46A(879274) BS_VJ2S5DVS -1.3962679016493 NA NA 0.877969325070145 no change NA NA no change 12:55789075 6:80612165 ARRIBA frameshift 3 0 medium [],translocation SARNP NA AL590824.1 FAM46A Oncogene NA NA NA NA -SARS2--PBX4 BS_TGS109T3 -0.282503572321946 2.04491603336622 NA NA no change differentially expressed NA NA 19:38930470 19:19565089 ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr19:19.30Mb]],deletion SARS2 NA PBX4 NA NA TranscriptionFactor NA NA NA -SASH1--LINC02067 BS_F6V1Y4QS 0.696568421704232 NA NA NA no change NA NA NA 6:148540556 3:161443601 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr6--chr3]],translocation SASH1 NA LINC02067 NA TumorSuppressorGene NA NA NA NA -SATB1-AS1--SATB1-AS1 BS_ERWT0ZWE 2.1819576894326 2.1819576894326 NA NA differentially expressed differentially expressed NA NA 3:18763791 3:18463480 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.48Mb]],duplication/non-canonical_splicing SATB1-AS1 NA SATB1-AS1 NA NA NA NA NA NA -SATB1-AS1--TBC1D5 BS_81SP2HX4 1.99948152446481 1.58643827855979 NA NA no change no change NA NA 3:18527326 3:17384015 ARRIBA other 2 2 high [INTRACHROMOSOMAL[chr3:0.70Mb]],inversion SATB1-AS1 NA TBC1D5 NA NA NA NA NA NA -SATB2--MAIP1(2356)/SPATS2L(294985) BS_1A6MQ9ZA 2.59047234295806 NA NA 3.17116637456849 differentially expressed NA NA differentially expressed 2:199308760 2:200010896 ARRIBA frameshift 7 1 high [],duplication SATB2 NA MAIP1 SPATS2L TranscriptionFactor NA NA NA NA -SATB2--STAG2 BS_MA1A3GY0 4.85522662151378 0.753473510238843 NA NA differentially expressed no change NA NA 2:199433338 X:124086725 ARRIBA in-frame 31 2 high [INTERCHROMOSOMAL[chr2--chrX]],translocation/5'-5' SATB2 NA STAG2 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA -SBF2--AL136088.1 BS_KBT7MQ6H 0.668316090418705 NA NA NA no change NA NA NA 11:10294015 11:30630059 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:20.29Mb]],inversion SBF2 NA AL136088.1 NA NA NA NA NA NA -SBF2--AL136088.1 BS_KBT7MQ6H 0.668316090418705 NA NA NA no change NA NA NA 11:10294015 11:30592436 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:20.29Mb]],inversion SBF2 NA AL136088.1 NA NA NA NA NA NA -SBF2-AS1--NAV2-AS4 BS_49FQXT2E 0.329046267670684 3.80763170912552 NA NA no change differentially expressed NA NA 11:9758503 11:19519894 ARRIBA other 3 0 high [HGNC_GENEFAM,INTRACHROMOSOMAL[chr11:9.70Mb]],inversion SBF2-AS1 NA NAV2-AS4 NA NA NA NA NA NA -SBNO2--NOC4L BS_M7QJ8VF0 0.630627221273293 0.199882723354839 NA NA no change no change NA NA 19:1174172 12:132150981 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr19--chr12]],translocation SBNO2 NA NOC4L NA NA NA NA NA NA -SCAF4--COMMD7 BS_29X4ZX6Q 1.63039194575435 -1.8512567381441 NA NA no change no change NA NA 21:31690797 20:32720050 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr21--chr20]],translocation/5'-5' SCAF4 NA COMMD7 NA NA NA NA NA NA -SCAI--RPL35AP21(75143)/TMEM2(18290) BS_0XEG6SNV 1.08553623491287 -0.0967371019719089 NA 1.22678783681231 no change no change NA no change 9:125142633 9:71665076 ARRIBA frameshift 5 0 high [],deletion SCAI NA RPL35AP21 TMEM2 NA NA NA NA NA -SCAPER--SCAPER BS_7G42J2SK 0.0262454721430909 0.0262454721430909 NA NA no change no change NA NA 15:76701758 15:76771954 ARRIBA in-frame 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.56Mb]],duplication/non-canonical_splicing SCAPER NA SCAPER NA NA NA NA NA NA -SCARA5--CACNA2D3 BS_KF0ZXDER 24.812685688321 1.68027355734833 NA NA differentially expressed no change NA NA 8:27987504 3:54503492 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr8--chr3]],translocation SCARA5 NA CACNA2D3 NA NA TumorSuppressorGene NA NA NA -SCARNA10--RNU5B-1 BS_R6WNEEE4 15.3764566474835 7.14338329210651 NA NA differentially expressed differentially expressed NA NA 12:6510500 15:65304697 ARRIBA other 17 0 low [INTERCHROMOSOMAL[chr12--chr15]],translocation SCARNA10 NA RNU5B-1 NA NA NA NA NA NA -SCFD1--AL355838.1 BS_K17VQECG 0.631157649440168 NA NA NA no change NA NA NA 14:30708065 14:81771151 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr14:51.01Mb]],deletion SCFD1 NA AL355838.1 NA NA NA NA NA NA -SCFD1--AL358332.1 BS_K17VQECG 0.631157649440168 NA NA NA no change NA NA NA 14:30708065 14:51362153 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr14:20.61Mb]],inversion SCFD1 NA AL358332.1 NA NA NA NA NA NA -SCFD1--AL358332.1 BS_K17VQECG 0.631157649440168 NA NA NA no change NA NA NA 14:30708065 14:51345075 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:20.61Mb]],inversion SCFD1 NA AL358332.1 NA NA NA NA NA NA -SCFD2--DCUN1D4 BS_4QW2S1Q8 5.77513417769727 1.38597362935058 NA NA differentially expressed no change NA NA 4:53352598 4:51877763 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr4:0.96Mb]],inversion SCFD2 NA DCUN1D4 NA NA NA NA NA NA -SCFD2--GSX2(103218)/RPL22P13(15403) BS_B1C6GZ84 11.5398634636459 4.69037994662461 NA NA differentially expressed differentially expressed NA NA 4:53273826 4:54205723 ARRIBA frameshift 22 2 high [],inversion SCFD2 NA GSX2 RPL22P13 NA TranscriptionFactor NA NA NA -SCFD2--LNX1-AS1 BS_B1C6GZ84 11.5398634636459 42.9185026952891 NA NA differentially expressed differentially expressed NA NA 4:53273826 4:53548875 ARRIBA frameshift 17 4 high [INTRACHROMOSOMAL[chr4:0.13Mb]],inversion SCFD2 NA LNX1-AS1 NA NA NA NA NA NA -SCFD2--LNX1-AS1 BS_B1C6GZ84 11.5398634636459 42.9185026952891 NA NA differentially expressed differentially expressed NA NA 4:53273826 4:53524195 ARRIBA frameshift 15 4 high [INTRACHROMOSOMAL[chr4:0.13Mb]],inversion SCFD2 NA LNX1-AS1 NA NA NA NA NA NA -SCFD2--LNX1-AS1 BS_B1C6GZ84 11.5398634636459 42.9185026952891 NA NA differentially expressed differentially expressed NA NA 4:53273826 4:53549357 ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr4:0.13Mb]],inversion SCFD2 NA LNX1-AS1 NA NA NA NA NA NA -SCFD2--LNX1-AS1 BS_B1C6GZ84 11.5398634636459 42.9185026952891 NA NA differentially expressed differentially expressed NA NA 4:53273826 4:53522990 ARRIBA frameshift 3 4 medium [INTRACHROMOSOMAL[chr4:0.13Mb]],inversion SCFD2 NA LNX1-AS1 NA NA NA NA NA NA -SCFD2--PDGFRA BS_B1C6GZ84 11.5398634636459 8.58831659116166 NA NA differentially expressed differentially expressed NA NA 4:53273826 4:54258757 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr4:0.86Mb]],inversion SCFD2 NA PDGFRA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -SCFD2--PDGFRA BS_B1C6GZ84 11.5398634636459 8.58831659116166 NA NA differentially expressed differentially expressed NA NA 4:53273826 4:54295125 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.86Mb]],inversion SCFD2 NA PDGFRA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -SCFD2--PDGFRA BS_B1C6GZ84 11.5398634636459 8.58831659116166 NA NA differentially expressed differentially expressed NA NA 4:53313636 4:54258757 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.86Mb]],inversion SCFD2 NA PDGFRA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -SCFD2--SCFD2 BS_1EBQ3T20 6.46124966579813 6.46124966579813 NA NA differentially expressed differentially expressed NA NA 4:53145333 4:53313763 ARRIBA frameshift 33 4 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr4:0.49Mb]],duplication/non-canonical_splicing SCFD2 NA SCFD2 NA NA NA NA NA NA -SCHIP1--CCDC68 BS_4B0BAVTX 0.733987856518847 3.41484562485447 NA NA no change differentially expressed NA NA 3:159840214 18:54919376 ARRIBA frameshift 17 0 high [INTERCHROMOSOMAL[chr3--chr18]],translocation SCHIP1 NA CCDC68 NA NA NA NA NA NA -SCHIP1--CCDC68 BS_4B0BAVTX 0.733987856518847 3.41484562485447 NA NA no change differentially expressed NA NA 3:159840214 18:54917996 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr3--chr18]],translocation SCHIP1 NA CCDC68 NA NA NA NA NA NA -SCHIP1--NAALADL2 BS_MKM0EEN1 -1.11354824692974 7.91185034675778 NA NA no change differentially expressed NA NA 3:159840214 3:174821748 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr3:14.54Mb]],inversion/3'-3' SCHIP1 NA NAALADL2 NA NA NA NA NA NA -SCIN--AC013470.2(24591)/AC005281.1(3312) BS_7BTZQKYY 3.24081975336114 NA NA 0.114053881427599 differentially expressed NA NA no change 7:12644705 7:12566813 ARRIBA frameshift 1 1 low [],duplication SCIN NA AC013470.2 AC005281.1 NA NA NA NA NA -SCLT1--ADGRL3 BS_49FQXT2E 1.26047059225594 2.75493374393765 NA NA no change differentially expressed NA NA 4:129082306 4:62031442 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr4:66.79Mb]],inversion SCLT1 NA ADGRL3 NA Oncogene NA NA NA NA -SCML2--CXorf58(2894)/KLHL15(41319) BS_FCAKKZ20 3.29989711015423 4.03260039709418 NA 3.01090233176313 differentially expressed differentially expressed NA differentially expressed X:18354592 X:23942401 ARRIBA other 4 0 medium [],inversion SCML2 NA CXorf58 KLHL15 NA NA NA NA NA -SCN3A--SCN3A BS_K5802F84 1.09794023219436 1.09794023219436 NA NA no change no change NA NA 2:165100302 2:165115575 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.12Mb]],duplication/non-canonical_splicing SCN3A NA SCN3A NA NA NA NA NA NA -SCN8A--SCN8A BS_55JW3HFM -0.0598336362647239 -0.0598336362647239 NA NA no change no change NA NA 12:51794641 12:51786542 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.22Mb]],duplication/non-canonical_splicing SCN8A NA SCN8A NA NA NA NA NA NA -SCN8A--SCN8A BS_CTR5X93B -0.420262283569471 -0.420262283569471 NA NA no change no change NA NA 12:51794641 12:51786542 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.22Mb]],duplication/non-canonical_splicing SCN8A NA SCN8A NA NA NA NA NA NA -SCN8A--SCN8A BS_FJWZ3M7V -0.152350069946756 -0.152350069946756 NA NA no change no change NA NA 12:51794641 12:51786542 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.22Mb]],duplication/non-canonical_splicing SCN8A NA SCN8A NA NA NA NA NA NA -SCN8A--SCN8A BS_YVMEEBKC -0.154814291433537 -0.154814291433537 NA NA no change no change NA NA 12:51794641 12:51786542 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.22Mb]],duplication/non-canonical_splicing SCN8A NA SCN8A NA NA NA NA NA NA -SCUBE1--HSD17B4 BS_1D6PZNKN -0.211311720082115 -0.467187713386848 NA NA no change no change NA NA 22:43339104 5:119499317 ARRIBA frameshift 14 0 high [INTERCHROMOSOMAL[chr22--chr5]],translocation SCUBE1 NA HSD17B4 NA NA NA NA NA NA -SDHAP3--AC026412.1 BS_J8G4SH4Z 2.66111969920427 NA NA NA differentially expressed NA NA NA 5:1593113 5:1599827 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[4300]],duplication SDHAP3 NA AC026412.1 NA NA NA NA NA NA -SDK1--PAPD7 BS_0VRSD9V3 2.72202490039324 1.7181754569966 NA NA differentially expressed no change NA NA 7:3821583 5:6750331 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr7--chr5]],translocation SDK1 NA PAPD7 NA NA NA NA NA NA -SEC11A--RN7SKP181(276784)/AC020704.1(153009) BS_3MS8WVNR -0.318405715820995 -0.0294627825494395 NA NA no change no change NA NA 15:84716025 15:97119168 ARRIBA frameshift 6 0 high [],duplication SEC11A NA RN7SKP181 AC020704.1 NA NA NA NA NA -SEC11A--RN7SKP181(276784)/AC020704.1(153009) BS_8MA5B8Y9 -0.809233537114209 -0.0294627825494395 NA NA no change no change NA NA 15:84716025 15:97119168 ARRIBA frameshift 2 0 medium [],duplication SEC11A NA RN7SKP181 AC020704.1 NA NA NA NA NA -SEC11A--RN7SKP181(331483)/AC020704.1(98310) BS_3MS8WVNR -0.318405715820995 -0.0294627825494395 NA NA no change no change NA NA 15:84716025 15:97173867 ARRIBA frameshift 2 0 medium [],duplication SEC11A NA RN7SKP181 AC020704.1 NA NA NA NA NA -SEC23A--LRRC4C BS_6JHXXVR7 3.13518573416267 -2.35225371261433 NA NA differentially expressed differentially expressed NA NA 14:39075935 11:41223008 ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr14--chr11]],translocation SEC23A NA LRRC4C NA NA NA NA NA NA -SEC24D--KRT18P39(2235)/NPM1P33(4803) BS_6VPKXXMR 3.60880329403097 18.1566130719488 NA 30.3580833034692 differentially expressed differentially expressed NA differentially expressed 4:118815028 2:203767828 ARRIBA frameshift 16 2 high [],translocation SEC24D NA KRT18P39 NPM1P33 NA NA NA NA NA -SEC24D--KRT18P39(2235)/NPM1P33(4803) BS_M85CXHDV 3.41158295509376 4.78130683322376 NA 14.8102015955086 differentially expressed differentially expressed NA differentially expressed 4:118815028 2:203767828 ARRIBA frameshift 5 0 high [],translocation SEC24D NA KRT18P39 NPM1P33 NA NA NA NA NA -SEC24D--SEC24D BS_HCP5C912 1.20375325284117 1.20375325284117 NA NA no change no change NA NA 4:118797683 4:118817412 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing SEC24D NA SEC24D NA NA NA NA NA NA -SEC31A--CYFIP2 BS_MGAMKKBD 0.228115591192788 -0.48228623749267 NA NA no change no change NA NA 4:82878787 5:157303347 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr4--chr5]],translocation SEC31A NA CYFIP2 NA NA NA NA NA NA -SEC61A2--DHTKD1 BS_1EBQ3T20 -0.968414962343789 1.63496680238005 NA NA no change no change NA NA 10:12149961 10:12081472 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr10:0.01Mb],LOCAL_REARRANGEMENT:+:[6412]],duplication SEC61A2 NA DHTKD1 NA NA NA NA NA NA -SEC61A2--DHTKD1 BS_N6NE6B3W -0.794187799589918 3.93749400702969 NA NA no change differentially expressed NA NA 10:12149961 10:12081472 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:0.01Mb],LOCAL_REARRANGEMENT:+:[6412]],duplication SEC61A2 NA DHTKD1 NA NA NA NA NA NA -SEC61A2--DHTKD1 BS_N6NE6B3W -0.794187799589918 3.93749400702969 NA NA no change differentially expressed NA NA 10:12162289 10:12118749 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr10:0.01Mb],LOCAL_REARRANGEMENT:+:[6412]],duplication SEC61A2 NA DHTKD1 NA NA NA NA NA NA -SEC61A2--DHTKD1 BS_N6NE6B3W -0.794187799589918 3.93749400702969 NA NA no change differentially expressed NA NA 10:12133308 10:12112900 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr10:0.01Mb],LOCAL_REARRANGEMENT:+:[6412]],duplication SEC61A2 NA DHTKD1 NA NA NA NA NA NA -SEC61A2--NWD2 BS_7327SDAQ -0.738880274703048 -0.7467082181592 NA NA no change no change NA NA 10:12143195 4:37356366 ARRIBA frameshift 3 2 high [INTERCHROMOSOMAL[chr10--chr4]],translocation SEC61A2 NA NWD2 NA NA NA NA NA NA -SEL1L3--SEL1L3 BS_KVNGNETA 1.2239350469315 1.2239350469315 NA NA no change no change NA NA 4:25776277 4:25822128 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing SEL1L3 NA SEL1L3 NA NA NA NA NA NA -SELENOT--WDFY2 BS_C41DJZ1F NA 1.01347953533205 NA NA NA no change NA NA 3:150624899 13:51758192 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr3--chr13]],translocation SELENOT NA WDFY2 NA NA NA NA NA NA -SEMA3D--SEMA3D(37586)/DYNLL1P7(156677) BS_VA5T4KAA 11.5776839091739 11.5776839091739 NA -0.130657533845738 differentially expressed differentially expressed NA no change 7:85065424 7:85224441 ARRIBA frameshift 2 0 low [],duplication SEMA3D NA SEMA3D DYNLL1P7 NA NA NA NA NA -SEMA5A--SEMA4A BS_KE56MMY0 1.4512300579863 -0.162767399929131 NA NA no change no change NA NA 5:9197168 1:156154550 ARRIBA frameshift 6 0 high [HGNC_GENEFAM,INTERCHROMOSOMAL[chr5--chr1]],translocation SEMA5A NA SEMA4A NA NA NA NA NA NA -SEMA5A--SEMA5A BS_TGS109T3 8.06578633504732 8.06578633504732 NA NA differentially expressed differentially expressed NA NA 5:9379823 5:9269031 ARRIBA frameshift 9 0 medium [SELFIE,INTRACHROMOSOMAL[chr5:0.51Mb]],inversion/5'-5' SEMA5A NA SEMA5A NA NA NA NA NA NA -SEMA6A-AS1--COMMD10 BS_1EBQ3T20 2.28696485343329 2.41520336898624 NA NA differentially expressed differentially expressed NA NA 5:116449817 5:116087497 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr5:0.03Mb],LOCAL_REARRANGEMENT:+:[34785]],duplication SEMA6A-AS1 NA COMMD10 NA NA NA NA NA NA -SEMA6A-AS1--COMMD10 BS_8ZD6J47V 1.12334184625407 1.12084375179652 NA NA no change no change NA NA 5:116449817 5:116087497 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr5:0.03Mb],LOCAL_REARRANGEMENT:+:[34785]],duplication SEMA6A-AS1 NA COMMD10 NA NA NA NA NA NA -SENP6--SENP6 BS_9GJ23RHH 2.80004452293668 2.80004452293668 NA NA differentially expressed differentially expressed NA NA 6:75678927 6:75670553 ARRIBA frameshift 27 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.12Mb]],duplication/non-canonical_splicing SENP6 NA SENP6 NA NA NA NA NA NA -SEPT11--FAM172A BS_B1C6GZ84 0.571793292814118 2.59754786589594 NA NA no change differentially expressed NA NA 4:76996539 5:93621129 ARRIBA in-frame 22 3 high [INTERCHROMOSOMAL[chr4--chr5]],translocation SEPT11 NA FAM172A NA NA TumorSuppressorGene NA NA NA -SEPT14--PSPH BS_GMDQK06Q 0.541206075403917 1.64909523197601 NA NA no change no change NA NA 7:55858190 7:56011222 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr7:0.15Mb]],inversion/3'-3' SEPT14 NA PSPH NA NA NA NA NA NA -SEPT7--ELMO1(81324)/NECAP1P1(54927) BS_PNYN0AYD 0.535828116968175 -1.32993568165001 NA 4.04047353563682 no change no change NA differentially expressed 7:35801270 7:37530573 ARRIBA frameshift 3 0 medium [],deletion SEPT7 NA ELMO1 NECAP1P1 NA Oncogene NA NA NA -SEPT9--AP003108.2 BS_1D6PZNKN 3.54666123447546 NA NA NA differentially expressed NA NA NA 17:77437770 11:61468692 ARRIBA other 2 2 medium [INTERCHROMOSOMAL[chr17--chr11]],translocation SEPT9 NA AP003108.2 NA CosmicCensus, Oncogene NA NA NA NA -SEPT9--SRP68 BS_X23724NJ 4.09206439450249 1.37978826633059 NA NA differentially expressed no change NA NA 17:77402703 17:76061574 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr17:1.21Mb]],inversion SEPT9 NA SRP68 NA CosmicCensus, Oncogene NA NA NA NA -SEPT9--SRP68 BS_X23724NJ 4.09206439450249 1.37978826633059 NA NA differentially expressed no change NA NA 17:77402703 17:76060390 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr17:1.21Mb]],inversion SEPT9 NA SRP68 NA CosmicCensus, Oncogene NA NA NA NA -SEPT9--SRP68 BS_X23724NJ 4.09206439450249 1.37978826633059 NA NA differentially expressed no change NA NA 17:77402703 17:76061219 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:1.21Mb]],inversion SEPT9 NA SRP68 NA CosmicCensus, Oncogene NA NA NA NA -SERGEF--TPH1 BS_VA5T4KAA -1.0413405894662 32.4900630770385 NA NA no change differentially expressed NA NA 11:17988597 11:18040788 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[4402]],duplication SERGEF NA TPH1 NA NA NA NA NA NA -SERGEF--TPH1 BS_WMEHNDSK -0.611812554944194 41.9085057185937 NA NA no change differentially expressed NA NA 11:17878208 11:18040788 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[4402]],duplication SERGEF NA TPH1 NA NA NA NA NA NA -SERGEF--TPH1 BS_WMEHNDSK -0.611812554944194 41.9085057185937 NA NA no change differentially expressed NA NA 11:17959470 11:18040788 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[4402]],duplication SERGEF NA TPH1 NA NA NA NA NA NA -SERGEF--TPH1 BS_WMEHNDSK -0.611812554944194 41.9085057185937 NA NA no change differentially expressed NA NA 11:17988597 11:18040788 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[4402]],duplication SERGEF NA TPH1 NA NA NA NA NA NA -SERINC3--OVOL2 BS_SFRQXM76 -0.257517980795976 6.34844549443832 NA NA no change differentially expressed NA NA 20:44503815 20:18024952 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr20:26.44Mb]],deletion SERINC3 NA OVOL2 NA Oncogene TranscriptionFactor NA NA NA -SERPINE2--SGPP2 BS_AZN38B7V -0.244381169453743 -2.1449639130513 NA NA no change differentially expressed NA NA 2:224039099 2:222462513 ARRIBA other 13 0 high [INTRACHROMOSOMAL[chr2:1.41Mb]],deletion/5'-5' SERPINE2 NA SGPP2 NA NA NA NA NA NA -SESN1--SMOC2 BS_1D6PZNKN -2.89565364684461 0.945109145417791 NA NA differentially expressed no change NA NA 6:109093795 6:168532355 ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr6:59.35Mb]],duplication/5'-5' SESN1 NA SMOC2 NA NA NA NA NA NA -SESTD1--RPLP0P7(108090)/CDK7P1(324385) BS_1D6PZNKN 1.64007345173924 -0.0714106496115076 NA NA no change no change NA NA 2:179264499 2:156886462 ARRIBA other 2 0 medium [],inversion SESTD1 NA RPLP0P7 CDK7P1 NA NA NA NA NA -SETD1B--GYS1 BS_TM9MH0RP 1.82405604574888 1.30683263253933 NA NA no change no change NA NA 12:121825366 19:48981636 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr12--chr19]],translocation SETD1B NA GYS1 NA CosmicCensus NA NA NA NA -SETD2--ROBO1 BS_2W3NC4K1 1.22376466649065 0.13508369195071 NA NA no change no change NA NA 3:47037666 3:79270532 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr3:31.43Mb]],inversion/5'-5' SETD2 NA ROBO1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA NA -SETD2--ROBO1 BS_FAQQ0GCQ 1.41953735031442 0.697466788768392 NA NA no change no change NA NA 3:47113876 3:79022388 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:31.43Mb]],duplication SETD2 NA ROBO1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA NA -SEZ6L2--MYH9 BS_B24PKKQB 0.681998679613159 5.57950384111599 NA NA no change differentially expressed NA NA 16:29897852 22:36302678 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr16--chr22]],translocation SEZ6L2 NA MYH9 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -SF1--MTA2 BS_H4NXBD2D -0.741658428566321 0.831225975594693 NA NA no change no change NA NA 11:64776498 11:62597868 ARRIBA frameshift 10 1 high [INTRACHROMOSOMAL[chr11:2.16Mb]],inversion/5'-5' SF1 NA MTA2 NA NA NA NA NA NA -SF1--TUT1 BS_H4NXBD2D -0.741658428566321 0.508000109582531 NA NA no change no change NA NA 11:64775050 11:62591756 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr11:2.17Mb]],inversion/5'-5' SF1 NA TUT1 NA NA NA NA NA NA -SF3B1--HSPE1-MOB4 BS_RGPSEMHC 0.0243860827292193 2.11210444227574 NA NA no change differentially expressed NA NA 2:197397985 2:197542363 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:0.07Mb],LOCAL_INVERSION:-:+:[65322]],duplication/5'-5' SF3B1 NA HSPE1-MOB4 NA CosmicCensus, Oncogene NA NA NA NA -SF3B1--MOB4 BS_RGPSEMHC 0.0243860827292193 -1.52043478438082 NA NA no change no change NA NA 2:197397985 2:197542363 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:0.08Mb],LOCAL_INVERSION:-:+:[80480]],duplication/5'-5' SF3B1 NA MOB4 NA CosmicCensus, Oncogene NA NA NA NA -SF3B2--EEF1DP8(7279)/SCGB1D1(13109) BS_B1C6GZ84 1.17030481038809 -0.25327913825787 NA 6.95867618900311 no change no change NA differentially expressed 11:66068216 11:62177107 ARRIBA frameshift 4 0 medium [],duplication SF3B2 NA EEF1DP8 SCGB1D1 NA NA NA NA NA -SF3B2--RTN3 BS_SXCZ3CXN 0.417732934992601 -2.03221701055475 NA NA no change differentially expressed NA NA 11:66068577 11:63759473 ARRIBA frameshift 90 18 high [INTRACHROMOSOMAL[chr11:2.29Mb]],duplication SF3B2 NA RTN3 NA NA NA NA NA NA -SF3B2--SCGB1D1 BS_B1C6GZ84 1.17030481038809 6.95867618900311 NA NA no change differentially expressed NA NA 11:66068045 11:62192272 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr11:3.86Mb]],duplication SF3B2 NA SCGB1D1 NA NA NA NA NA NA -SF3B2--SCGB1D1 BS_B1C6GZ84 1.17030481038809 6.95867618900311 NA NA no change differentially expressed NA NA 11:66068045 11:62192056 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr11:3.86Mb]],duplication SF3B2 NA SCGB1D1 NA NA NA NA NA NA -SF3B3--GNG7 BS_WMEHNDSK 2.75746327059948 -3.25105864340666 NA NA differentially expressed differentially expressed NA NA 16:70526726 19:2520725 ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr16--chr19]],translocation SF3B3 NA GNG7 NA NA NA NA NA NA -SFI1--TAB1 BS_49FQXT2E -1.35410243262297 0.566878846015952 NA NA no change no change NA NA 22:31496637 22:39415006 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr22:7.78Mb]],deletion SFI1 NA TAB1 NA NA NA NA NA NA -SFMBT2--BDH1 BS_TRKH2SPE 2.20391720485726 -1.23801290511568 NA NA differentially expressed no change NA NA 10:7367649 3:197539648 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr10--chr3]],translocation/5'-5' SFMBT2 NA BDH1 NA Oncogene NA NA NA NA -SFMBT2--LINC00707(29056)/AL392086.1(19495) BS_996ZS2A4 4.20330659246651 2.88843885191453 NA NA differentially expressed differentially expressed NA NA 10:7205815 10:6871962 ARRIBA frameshift 5 1 high [],inversion SFMBT2 NA LINC00707 AL392086.1 Oncogene NA NA NA NA -SFPQ--AGO1 BS_RCCN63K6 0.447945986607687 3.53122892696061 NA NA no change differentially expressed NA NA 1:35192517 1:35913842 ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr1:0.68Mb]],deletion/3'-3' SFPQ NA AGO1 NA CosmicCensus, Oncogene NA NA NA NA -SFPQ--SSX2IP BS_TK84K675 -1.20398554164586 -0.0880065667404487 NA NA no change no change NA NA 1:35183969 1:84673074 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr1:49.45Mb]],inversion/5'-5' SFPQ NA SSX2IP NA CosmicCensus, Oncogene NA NA NA NA -SFXN1--ATP6V0E1(13288)/Y_RNA(3719) BS_DFGS950G 3.09122493874178 0.33676243913097 NA -0.162236315085263 differentially expressed no change NA no change 5:175522422 5:173048733 ARRIBA frameshift 1 2 high [],inversion SFXN1 NA ATP6V0E1 Y_RNA NA NA NA NA NA -SGCB--AC098868.1(150043)/LINC02260(6445) BS_QB84TBA3 3.91202118713737 NA NA NA differentially expressed NA NA NA 4:52027968 4:54596766 ARRIBA frameshift 8 1 high [],duplication SGCB NA AC098868.1 LINC02260 NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_052PZFMK 3.99260341143663 NA NA 3.99260341143663 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 9 1 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_0T17SY47 2.58937112937474 NA NA 2.58937112937474 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 6 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_0X9EGHY2 2.45639155560716 NA NA 2.45639155560716 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 4 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_1021ZGQT 6.07543981971464 NA NA 6.07543981971464 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 38 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_1QXEC43H 3.78721775008123 NA NA 3.78721775008123 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 9 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_2A162JH9 6.66396540499258 NA NA 6.66396540499258 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 23 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_2ADZNNV4 3.64782531558381 NA NA 3.64782531558381 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 7 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_39CGACC7 2.43260333580033 NA NA 2.43260333580033 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 3 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_49852ZBH 5.41395766719959 NA NA 5.41395766719959 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 21 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_4C4MZ4NT 3.63621189756218 NA NA 3.63621189756218 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 8 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_5CMGN56B 3.6823782238089 NA NA 3.6823782238089 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 7 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_5YJEPPTP 4.708311966989 NA NA 4.708311966989 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 8 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_6MY8W3H0 2.86851909448641 NA NA 2.86851909448641 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 7 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_6T4JGBGY 6.21429505485085 NA NA 6.21429505485085 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 13 3 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_7C40TRCY 5.04386117524348 NA NA 5.04386117524348 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 16 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_7FWZ518S 1.00584155431972 NA NA 1.00584155431972 no change NA NA no change 5:155870424 5:155854549 ARRIBA other 4 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_7WNSZNE3 3.69759873560585 NA NA 3.69759873560585 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 10 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_81SP2HX4 3.81282325851361 NA NA 3.81282325851361 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 14 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_8ZD6J47V 5.78588424113348 NA NA 5.78588424113348 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 16 2 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_9Q6Z6VJC 4.89721968164696 NA NA 4.89721968164696 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 5 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_AJ6X83G5 2.55528738305218 NA NA 2.55528738305218 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 4 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_AMQGM1V9 2.52078197144596 NA NA 2.52078197144596 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 7 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_AMZ70B6F 4.93643511661972 NA NA 4.93643511661972 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 26 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_BPSTSCBJ 5.81089922374442 NA NA 5.81089922374442 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 13 1 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_BPWEFR89 3.55752820675701 NA NA 3.55752820675701 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 15 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_BVSW4GTG 5.54025776944881 NA NA 5.54025776944881 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 9 1 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_BWBDH9GM 6.94417370626525 NA NA 6.94417370626525 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 25 1 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_C7A2TYAC 4.78387511625597 NA NA 4.78387511625597 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 10 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_C7N3J4NW 2.05589467434228 NA NA 2.05589467434228 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 6 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_CREQ97QC 2.43260333580033 NA NA 2.43260333580033 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 6 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_CTR5X93B 3.93046627033825 NA NA 3.93046627033825 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 9 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_CYEY58NY 5.97160711042505 NA NA 5.97160711042505 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 12 1 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_DS438CXE 4.00622566984684 NA NA 4.00622566984684 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 15 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_EVCAC3NH 3.50922999790859 NA NA 3.50922999790859 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 15 1 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_FCAKKZ20 3.350522862418 NA NA 3.350522862418 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 11 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_FWMJPKCV 4.54235540299498 NA NA 4.54235540299498 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 22 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_H3FE3TH9 5.85501833196514 NA NA 5.85501833196514 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 22 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_HCP5C912 2.68919238629348 NA NA 2.68919238629348 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 14 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_HV8PFRBR 2.31052030929774 NA NA 2.31052030929774 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 3 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_JH29M4KG 3.73529055062575 NA NA 3.73529055062575 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 6 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_JVA2NQFF 5.34964562657654 NA NA 5.34964562657654 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 14 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_K3ER45RV 2.02841512334157 NA NA 2.02841512334157 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 6 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_K5802F84 2.7750192154597 NA NA 2.7750192154597 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 7 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_M8WP5T16 5.39130662316874 NA NA 5.39130662316874 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 7 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_MT15SGJN 2.0490501264529 NA NA 2.0490501264529 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 10 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_N1E0H8YQ 3.15471252339327 NA NA 3.15471252339327 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 5 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_NS7GSHB9 5.47882458768417 NA NA 5.47882458768417 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 15 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_NT9NZYFD 2.88887795761779 NA NA 2.88887795761779 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 6 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_PEP9NZXN 4.79157641484022 NA NA 4.79157641484022 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 9 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_R13X6TMW 2.98850111432938 NA NA 2.98850111432938 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 12 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_R6WNEEE4 4.63607090197195 NA NA 4.63607090197195 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 16 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_RSRPX3S8 2.86340607405321 NA NA 2.86340607405321 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 6 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_RWJZFTP9 6.4644128850914 NA NA 6.4644128850914 differentially expressed NA NA differentially expressed 5:156124019 5:155854549 ARRIBA other 1 2 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_SHMC4902 5.60420083498435 NA NA 5.60420083498435 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 13 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_T1DVKKJB 1.17961654673707 NA NA 1.17961654673707 no change NA NA no change 5:155870424 5:155854549 ARRIBA other 4 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_TJTEF70D 7.31735347600173 NA NA 7.31735347600173 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 13 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_V96WVE3Z 4.36888073380515 NA NA 4.36888073380515 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 46 2 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_VMMJYN8Z 2.61186441148552 NA NA 2.61186441148552 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 7 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_W644VEVE 3.29846875065122 NA NA 3.29846875065122 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 33 1 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_XGSA3GQE 4.51983942307765 NA NA 4.51983942307765 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 10 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_XJTW0P8P 2.85315182770454 NA NA 2.85315182770454 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 11 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_YVMEEBKC 4.71622445985648 NA NA 4.71622445985648 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 11 1 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_Z6BWR941 4.99185853238971 NA NA 4.99185853238971 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 9 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_ZR96A4FH 2.23462033698495 NA NA 2.23462033698495 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 9 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGCD--RNA5SP199(9021)/SGCD(15795) BS_ZTWGFWTX 3.63621189756218 NA NA 3.63621189756218 differentially expressed NA NA differentially expressed 5:155870424 5:155854549 ARRIBA other 5 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA -SGIP1--SGIP1 BS_398KYV92 1.60869545133839 1.60869545133839 NA NA no change no change NA NA 1:66690316 1:66677004 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SGIP1 NA SGIP1 NA NA NA NA NA NA -SGIP1--SGIP1 BS_CZ82ANWP 1.12472610561646 1.12472610561646 NA NA no change no change NA NA 1:66690316 1:66677004 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SGIP1 NA SGIP1 NA NA NA NA NA NA -SGIP1--SGIP1 BS_GG9W3J9Y 0.497023239551327 0.497023239551327 NA NA no change no change NA NA 1:66690316 1:66677004 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SGIP1 NA SGIP1 NA NA NA NA NA NA -SGIP1--SGIP1 BS_HX0S30NE -0.58790092687111 -0.58790092687111 NA NA no change no change NA NA 1:66690316 1:66677004 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SGIP1 NA SGIP1 NA NA NA NA NA NA -SGIP1--SGIP1 BS_K5802F84 1.86648724964232 1.86648724964232 NA NA no change no change NA NA 1:66690316 1:66677004 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SGIP1 NA SGIP1 NA NA NA NA NA NA -SGIP1--SGIP1 BS_NB5XWMJT 0.189083640782233 0.189083640782233 NA NA no change no change NA NA 1:66690316 1:66677004 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SGIP1 NA SGIP1 NA NA NA NA NA NA -SGIP1--SGIP1 BS_T0RKFEKR 0.00684986606682087 0.00684986606682087 NA NA no change no change NA NA 1:66690316 1:66677004 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SGIP1 NA SGIP1 NA NA NA NA NA NA -SGIP1--SGIP1 BS_W18SF91A 0.404167984777106 0.404167984777106 NA NA no change no change NA NA 1:66690316 1:66677004 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SGIP1 NA SGIP1 NA NA NA NA NA NA -SGMS1--AC068898.1 BS_TGS109T3 2.21327005083667 NA NA NA differentially expressed NA NA NA 10:50433476 10:48664412 ARRIBA other 13 0 high [INTRACHROMOSOMAL[chr10:1.63Mb]],deletion SGMS1 NA AC068898.1 NA TumorSuppressorGene, Oncogene NA NA NA NA -SGMS1--ALOX5 BS_A0DYVX9J -0.214718859936837 -1.09128994747956 NA NA no change no change NA NA 10:50622489 10:45441375 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:4.86Mb]],deletion/5'-5' SGMS1 NA ALOX5 NA TumorSuppressorGene, Oncogene Oncogene NA NA NA -SGMS1--ARHGAP22 BS_WGK8ZMVA 1.27315658754378 -0.65651257724777 NA NA no change no change NA NA 10:50519831 10:48583152 ARRIBA other 9 0 high [INTRACHROMOSOMAL[chr10:1.65Mb]],deletion SGMS1 NA ARHGAP22 NA TumorSuppressorGene, Oncogene NA NA NA NA -SGMS1--ARHGAP22 BS_WGK8ZMVA 1.27315658754378 -0.65651257724777 NA NA no change no change NA NA 10:50519831 10:48555550 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:1.65Mb]],deletion SGMS1 NA ARHGAP22 NA TumorSuppressorGene, Oncogene NA NA NA NA -SGMS1--BNC2 BS_VJ2S5DVS 1.63200420357088 7.51854884923976 NA NA no change differentially expressed NA NA 10:50433476 9:16583085 ARRIBA other 6 0 high [INTERCHROMOSOMAL[chr10--chr9]],translocation SGMS1 NA BNC2 NA TumorSuppressorGene, Oncogene TranscriptionFactor NA NA NA -SGPL1--DIP2C BS_8NY9J9NQ 1.90103088678145 1.08594636932279 NA NA no change no change NA NA 10:70816880 10:440996 ARRIBA frameshift 14 3 high [INTRACHROMOSOMAL[chr10:70.13Mb]],inversion SGPL1 NA DIP2C NA NA Oncogene NA NA NA -SGPL1--DIP2C BS_8NY9J9NQ 1.90103088678145 1.08594636932279 NA NA no change no change NA NA 10:70816126 10:440996 ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr10:70.13Mb]],inversion SGPL1 NA DIP2C NA NA Oncogene NA NA NA -SGPL1--DIP2C BS_8NY9J9NQ 1.90103088678145 1.08594636932279 NA NA no change no change NA NA 10:70816880 10:423033 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr10:70.13Mb]],inversion SGPL1 NA DIP2C NA NA Oncogene NA NA NA -SH2B2--CUX1 BS_6JHXXVR7 -0.598527077572053 1.36116559281642 NA NA no change no change NA NA 7:102301279 7:101825611 ARRIBA frameshift 2 0 low [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_REARRANGEMENT:+:[1134]],inversion/3'-3' SH2B2 NA CUX1 NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -SH2B3--ATXN2 BS_QEYPFYHD 0.331871289052658 0.506709749657419 NA NA no change no change NA NA 12:111451122 12:111554217 ARRIBA other 1 0 low [ChimerSeq,ChimerPub,INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[591]],duplication/3'-3' SH2B3 NA ATXN2 NA TumorSuppressorGene, CosmicCensus NA NA NA TCGAFusion -SH2B3--ATXN2 BS_QWNBZ9RJ 0.643214844644836 1.22414380444569 NA NA no change no change NA NA 12:111448370 12:111457359 ARRIBA other 1 0 low [ChimerSeq,ChimerPub,INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[591]],inversion SH2B3 NA ATXN2 NA TumorSuppressorGene, CosmicCensus NA NA NA TCGAFusion -SH2B3--ATXN2 BS_QWNBZ9RJ 0.643214844644836 1.22414380444569 NA NA no change no change NA NA 12:111451122 12:111513539 ARRIBA other 1 0 low [ChimerSeq,ChimerPub,INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[591]],duplication/3'-3' SH2B3 NA ATXN2 NA TumorSuppressorGene, CosmicCensus NA NA NA TCGAFusion -SH2D4A--CSGALNACT1 BS_1EBQ3T20 0.866088732966697 2.49884981455134 NA NA no change differentially expressed NA NA 8:19391582 8:19601865 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr8:0.01Mb],LOCAL_INVERSION:+:-:[7943]],duplication/3'-3' SH2D4A NA CSGALNACT1 NA NA NA NA NA NA -SH3BP5--BDH1 BS_FAQQ0GCQ 0.569274565550018 -1.41630421570703 NA NA no change no change NA NA 3:15330504 3:197546486 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr3:182.17Mb]],duplication SH3BP5 NA BDH1 NA NA NA NA NA NA -SH3BP5--BDH1 BS_FAQQ0GCQ 0.569274565550018 -1.41630421570703 NA NA no change no change NA NA 3:15330504 3:197533561 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:182.17Mb]],duplication SH3BP5 NA BDH1 NA NA NA NA NA NA -SH3KBP1--LINC01898 BS_PNYN0AYD 2.14803422158287 NA NA NA differentially expressed NA NA NA X:19683823 18:75697611 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chrX--chr18]],translocation SH3KBP1 NA LINC01898 NA NA NA NA NA NA -SH3KBP1--LINC01898 BS_PNYN0AYD 2.14803422158287 NA NA NA differentially expressed NA NA NA X:19695612 18:75697611 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chrX--chr18]],translocation SH3KBP1 NA LINC01898 NA NA NA NA NA NA -SH3KBP1--LINC01898(3181)/AC021506.1(129359) BS_PNYN0AYD 2.14803422158287 NA NA NA differentially expressed NA NA NA X:19683823 18:75715566 ARRIBA frameshift 20 2 high [],translocation SH3KBP1 NA LINC01898 AC021506.1 NA NA NA NA NA -SH3KBP1--SH3KBP1 BS_258RRGDM 0.709219276565758 0.709219276565758 NA NA no change no change NA NA X:19607938 X:19687691 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.35Mb]],duplication/non-canonical_splicing SH3KBP1 NA SH3KBP1 NA NA NA NA NA NA -SH3KBP1--SH3KBP1 BS_R7HZCZ8B 0.913216232149727 0.913216232149727 NA NA no change no change NA NA X:19607938 X:19687691 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.35Mb]],duplication/non-canonical_splicing SH3KBP1 NA SH3KBP1 NA NA NA NA NA NA -SH3KBP1--VPS13B BS_M0QYNVK8 0.478637062416375 1.20476944690661 NA NA no change no change NA NA X:19746318 8:99832369 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chrX--chr8]],translocation SH3KBP1 NA VPS13B NA NA NA NA NA NA -SH3PXD2A--HTRA1 BS_1SVVER1H 4.92809522025514 -0.321746797896133 NA NA differentially expressed no change NA NA 10:103693028 10:122488902 ARRIBA in-frame 87 13 high [ChimerSeq,INTRACHROMOSOMAL[chr10:18.61Mb]],inversion SH3PXD2A NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA -SH3PXD2A--HTRA1 BS_1SVVER1H 4.92809522025514 -0.321746797896133 NA NA differentially expressed no change NA NA 10:103668608 10:122488902 ARRIBA in-frame 10 15 high [ChimerSeq,INTRACHROMOSOMAL[chr10:18.61Mb]],inversion SH3PXD2A NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA -SH3PXD2A--HTRA1 BS_M9C4RY4P 4.53716023239853 0.11347043758797 NA NA differentially expressed no change NA NA 10:103693028 10:122488902 ARRIBA in-frame 24 0 high [ChimerSeq,INTRACHROMOSOMAL[chr10:18.61Mb]],inversion SH3PXD2A NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA -SH3PXD2A--HTRA1 BS_M9C4RY4P 4.53716023239853 0.11347043758797 NA NA differentially expressed no change NA NA 10:103668608 10:122488902 ARRIBA frameshift 2 1 medium [ChimerSeq,INTRACHROMOSOMAL[chr10:18.61Mb]],inversion SH3PXD2A NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA -SH3PXD2B--SH3PXD2B(80956)/LINC01944(21913) BS_TNRHHYNC 0.643071937653982 0.643071937653982 NA NA no change no change NA NA 5:172373790 5:172535479 ARRIBA frameshift 3 0 high [],inversion SH3PXD2B NA SH3PXD2B LINC01944 NA NA NA NA NA -SH3YL1--FTCDNL1 BS_YBJBSRHV -0.0251377490211195 0.40504783169129 NA NA no change no change NA NA 2:247538 2:199848969 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr2:199.49Mb]],duplication SH3YL1 NA FTCDNL1 NA NA NA NA NA NA -SHANK2--AC104042.1(718333)/SNORA31(285925) BS_7G42J2SK 1.28878329219183 NA NA 2.69835571830002 no change NA NA differentially expressed 11:71224697 11:37416200 ARRIBA other 19 5 high [],inversion SHANK2 NA AC104042.1 SNORA31 NA NA NA NA NA -SHB--CUX1 BS_74FS6GMW 3.84830320936978 0.769530514325184 NA NA differentially expressed no change NA NA 9:38067929 7:102239320 ARRIBA frameshift 3 1 medium [INTERCHROMOSOMAL[chr9--chr7]],translocation SHB NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -SHB--CUX1 BS_74FS6GMW 3.84830320936978 0.769530514325184 NA NA differentially expressed no change NA NA 9:37974622 7:102227367 ARRIBA in-frame 1 1 medium [INTERCHROMOSOMAL[chr9--chr7]],translocation SHB NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -SHB--PSIP1 BS_W3R88RFP 0.13949785664032 -1.18160082012232 NA NA no change no change NA NA 9:37955883 9:15466859 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr9:22.41Mb]],deletion SHB NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA -SHB--PSIP1 BS_W3R88RFP 0.13949785664032 -1.18160082012232 NA NA no change no change NA NA 9:37953831 9:15468273 ARRIBA other 6 1 medium [INTRACHROMOSOMAL[chr9:22.41Mb]],deletion SHB NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA -SHB--PSIP1 BS_W3R88RFP 0.13949785664032 -1.18160082012232 NA NA no change no change NA NA 9:37955883 9:15465580 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr9:22.41Mb]],deletion SHB NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA -SHB--U8(93392)/AL135785.1(119474) BS_V3Z3DB4N 1.82006337271415 -0.16515650414899 NA NA no change no change NA NA 9:37995227 9:38240953 ARRIBA other 2 1 medium [],duplication SHB NA U8 AL135785.1 NA NA NA NA NA -SHPRH--SHPRH BS_7G42J2SK 2.37870264577081 2.37870264577081 NA NA differentially expressed differentially expressed NA NA 6:145919348 6:145927277 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing SHPRH NA SHPRH NA TumorSuppressorGene TumorSuppressorGene NA NA NA -SHPRH--SHPRH BS_EK5PCKY0 2.2979693609109 2.2979693609109 NA NA differentially expressed differentially expressed NA NA 6:145888020 6:145927277 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing SHPRH NA SHPRH NA TumorSuppressorGene TumorSuppressorGene NA NA NA -SHPRH--SHPRH BS_G63HYD6N 2.35559374381441 2.35559374381441 NA NA differentially expressed differentially expressed NA NA 6:145888020 6:145927277 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing SHPRH NA SHPRH NA TumorSuppressorGene TumorSuppressorGene NA NA NA -SHPRH--SHPRH BS_NGHK9RZP 2.06746393576103 2.06746393576103 NA NA differentially expressed differentially expressed NA NA 6:145919348 6:145927277 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing SHPRH NA SHPRH NA TumorSuppressorGene TumorSuppressorGene NA NA NA -SHROOM2--LINC01986 BS_M0QYNVK8 0.525041181589362 NA NA NA no change NA NA NA X:9944913 3:23968 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chrX--chr3]],translocation SHROOM2 NA LINC01986 NA NA NA NA NA NA -SIAH3--EIF2B5 BS_B9V8RGTA 1.33759905031427 0.329433532192505 NA NA no change no change NA NA 13:45851495 3:184140955 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr13--chr3]],translocation/5'-5' SIAH3 NA EIF2B5 NA NA NA NA NA NA -SIK3--MLLT10 BS_9GJ23RHH -2.27469873843125 4.66454031762148 NA NA differentially expressed differentially expressed NA NA 11:117098143 10:21586294 ARRIBA in-frame 4 2 high [INTERCHROMOSOMAL[chr11--chr10]],translocation SIK3 NA MLLT10 NA Oncogene, Kinase CosmicCensus, Oncogene NA NA NA -SIPA1L2(68311)/RNU6-1211P(70335)--LAX1 BS_QWTE1CWR 3.26642879082919 21.7869587040777 NA NA differentially expressed differentially expressed NA NA 1:232629869 1:203770828 ARRIBA other 13 1 high [],inversion SIPA1L2 RNU6-1211P LAX1 NA NA NA NA NA NA -SIPA1L2(68311)/RNU6-1211P(70335)--LAX1 BS_WKESC3XN 4.19476694960699 39.8351816091867 NA NA differentially expressed differentially expressed NA NA 1:232629869 1:203770828 ARRIBA other 17 3 high [],inversion SIPA1L2 RNU6-1211P LAX1 NA NA NA NA NA NA -SIVA1--ANKRD13D BS_ZXYDSBM9 -0.26736619473331 -2.00797734177152 NA NA no change differentially expressed NA NA 14:104756760 11:67299058 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr14--chr11]],translocation SIVA1 NA ANKRD13D NA NA NA NA NA NA -SKAP2--SKAP2 BS_TK84K675 1.81543052259787 1.81543052259787 NA NA no change no change NA NA 7:26726882 7:26844137 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.33Mb]],duplication/non-canonical_splicing SKAP2 NA SKAP2 NA NA NA NA NA NA -SKAP2--SKAP2 BS_W18SF91A 1.86538537420261 1.86538537420261 NA NA no change no change NA NA 7:26726882 7:26844137 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.33Mb]],duplication/non-canonical_splicing SKAP2 NA SKAP2 NA NA NA NA NA NA -SLC12A2--SLC12A2 BS_9RT63JD9 1.54871717884383 1.54871717884383 NA NA no change no change NA NA 5:128141981 5:128114212 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.11Mb]],duplication/non-canonical_splicing SLC12A2 NA SLC12A2 NA NA NA NA NA NA -SLC12A2--SLC12A2 BS_MKM0EEN1 -0.283489536773229 -0.283489536773229 NA NA no change no change NA NA 5:128114681 5:128112814 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.11Mb]],duplication/non-canonical_splicing SLC12A2 NA SLC12A2 NA NA NA NA NA NA -SLC12A2--SLC12A2 BS_YNEQJ6AH 2.3019610006178 2.3019610006178 NA NA differentially expressed differentially expressed NA NA 5:128141981 5:128114212 ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.11Mb]],duplication/non-canonical_splicing SLC12A2 NA SLC12A2 NA NA NA NA NA NA -SLC12A7--CDH18(5236)/LINC02241(30731) BS_W36RZSFA 3.21404767138226 -1.60017892782256 NA NA differentially expressed no change NA NA 5:1075997 5:20581109 ARRIBA frameshift 3 0 low [],duplication SLC12A7 NA CDH18 LINC02241 NA NA NA NA NA -SLC12A7--ZBTB16 BS_6HTK4YJP 4.24614999856855 2.85857518792409 NA NA differentially expressed differentially expressed NA NA 5:1073633 11:114242167 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr5--chr11]],translocation SLC12A7 NA ZBTB16 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -SLC12A7--ZBTB16 BS_6HTK4YJP 4.24614999856855 2.85857518792409 NA NA differentially expressed differentially expressed NA NA 5:1074567 11:114242167 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr5--chr11]],translocation SLC12A7 NA ZBTB16 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -SLC14A2--RORB BS_6VPKXXMR 48.237763879841 1.42218943255892 NA NA differentially expressed no change NA NA 18:45483322 9:74630282 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr18--chr9]],translocation SLC14A2 NA RORB NA NA TranscriptionFactor NA NA NA -SLC17A9--NINL BS_B61168DE 3.12606248455824 -0.74558719739017 NA NA differentially expressed no change NA NA 20:62960603 20:25576647 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr20:37.37Mb]],duplication/5'-5' SLC17A9 NA NINL NA NA NA NA NA NA -SLC17A9--NINL(8276)/RNU6ATAC17P(17360) BS_B61168DE 3.12606248455824 -0.74558719739017 NA NA differentially expressed no change NA NA 20:62960603 20:25593793 ARRIBA frameshift 1 1 high [],duplication SLC17A9 NA NINL RNU6ATAC17P NA NA NA NA NA -SLC1A2--AC068733.3(37034)/AC068733.1(1742) BS_49FQXT2E 0.508326477276863 NA NA NA no change NA NA NA 11:35280867 11:6361057 ARRIBA frameshift 5 1 medium [],deletion SLC1A2 NA AC068733.3 AC068733.1 NA NA NA NA NA -SLC1A2--AC090092.1(110089)/AC100767.2(56866) BS_49FQXT2E 0.508326477276863 NA NA NA no change NA NA NA 11:35280867 11:23313250 ARRIBA frameshift 209 13 high [],deletion SLC1A2 NA AC090092.1 AC100767.2 NA NA NA NA NA -SLC1A2--AC107973.1 BS_3W07B2TG 1.04504396039954 NA NA NA no change NA NA NA 11:35418950 11:29804491 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr11:5.37Mb]],inversion SLC1A2 NA AC107973.1 NA NA NA NA NA NA -SLC1A2--EIF3F BS_CZ3NA7KV -0.254749737973694 0.486150013171827 NA NA no change no change NA NA 11:35418950 11:7986898 ARRIBA frameshift 8 1 high [INTRACHROMOSOMAL[chr11:27.25Mb]],inversion SLC1A2 NA EIF3F NA NA TumorSuppressorGene, Oncogene NA NA NA -SLC1A2--EIF3F BS_CZ3NA7KV -0.254749737973694 0.486150013171827 NA NA no change no change NA NA 11:35418950 11:7987353 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr11:27.25Mb]],inversion SLC1A2 NA EIF3F NA NA TumorSuppressorGene, Oncogene NA NA NA -SLC1A2--LUZP2 BS_VVTHDRBD 0.877237977213461 3.52080244791626 NA NA no change differentially expressed NA NA 11:35312198 11:25050038 ARRIBA in-frame 110 3 high [INTRACHROMOSOMAL[chr11:10.17Mb]],inversion SLC1A2 NA LUZP2 NA NA NA NA NA NA -SLC1A2--LUZP2 BS_VVTHDRBD 0.877237977213461 3.52080244791626 NA NA no change differentially expressed NA NA 11:35312198 11:25077329 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr11:10.17Mb]],inversion SLC1A2 NA LUZP2 NA NA NA NA NA NA -SLC1A2--SWAP70 BS_49FQXT2E 0.508326477276863 2.50449242460556 NA NA no change differentially expressed NA NA 11:35280867 11:9673404 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr11:25.50Mb]],deletion/5'-5' SLC1A2 NA SWAP70 NA NA Oncogene NA NA NA -SLC24A2--SRCIN1 BS_RWJZFTP9 3.41856516101275 -0.16732613630902 NA NA differentially expressed no change NA NA 9:19680781 17:38595084 ARRIBA other 1 2 medium [INTERCHROMOSOMAL[chr9--chr17]],translocation SLC24A2 NA SRCIN1 NA NA NA NA NA NA -SLC25A12--SLC25A12 BS_HCP5C912 -0.449692718876968 -0.449692718876968 NA NA no change no change NA NA 2:171868681 2:171893258 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.22Mb]],duplication/non-canonical_splicing SLC25A12 NA SLC25A12 NA NA NA NA NA NA -SLC25A51--AL591222.3(103650)/AL512635.1(259802) BS_JR5ATB7G 5.22231882018118 NA NA NA differentially expressed NA NA NA 9:37903531 9:20071644 ARRIBA other 9 1 high [],inversion SLC25A51 NA AL591222.3 AL512635.1 NA NA NA NA NA -SLC25A51--LINC00094 BS_A0DYVX9J 10.2837136443191 4.16794143645263 NA NA differentially expressed differentially expressed NA NA 9:37899829 9:134025845 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr9:96.12Mb]],inversion SLC25A51 NA LINC00094 NA NA NA NA NA NA -SLC25A6P5(124706)/LINC01505(17179)--TMEM38B BS_QNAQGAV6 0.300856958065953 0.444251940363624 -0.474026151698198 NA no change no change no change NA 9:105976131 9:105721537 ARRIBA other 2 0 medium [],duplication SLC25A6P5 LINC01505 TMEM38B NA NA NA NA NA NA -SLC2A12--EPB41L2 BS_3F4FQJMR 1.11225657490655 -0.276458393909496 NA NA no change no change NA NA 6:134052378 6:130963035 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr6:2.93Mb]],inversion/5'-5' SLC2A12 NA EPB41L2 NA NA NA NA NA NA -SLC2A12--EPB41L2 BS_HC44ZA0V 1.53677470622308 0.0273765553157492 NA NA no change no change NA NA 6:134052378 6:130977437 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr6:2.93Mb]],inversion/5'-5' SLC2A12 NA EPB41L2 NA NA NA NA NA NA -SLC2A13--ADI1P3(11015)/AC003686.1(10053) BS_A0DYVX9J 2.56138437078351 NA NA NA differentially expressed NA NA NA 12:40105253 12:47474636 ARRIBA frameshift 4 0 high [],duplication SLC2A13 NA ADI1P3 AC003686.1 NA NA NA NA NA -SLC2A13--C10orf53 BS_VJ2S5DVS -0.452967970090709 10.211153521887 NA NA no change differentially expressed NA NA 12:39764460 10:49693774 ARRIBA in-frame 2 1 high [INTERCHROMOSOMAL[chr12--chr10]],translocation SLC2A13 NA C10orf53 NA NA NA NA NA NA -SLC2A13--LINC02156(28117)/ADI1P3(14791) BS_A0DYVX9J 2.56138437078351 NA NA NA differentially expressed NA NA NA 12:40105253 12:47448296 ARRIBA frameshift 2 1 high [],duplication SLC2A13 NA LINC02156 ADI1P3 NA NA NA NA NA -SLC30A9--AC093730.1 BS_4QW2S1Q8 0.744410140592888 NA NA NA no change NA NA NA 4:42001780 4:63474138 ARRIBA frameshift 13 0 high [INTRACHROMOSOMAL[chr4:21.38Mb]],inversion SLC30A9 NA AC093730.1 NA NA NA NA NA NA -SLC30A9--AC093730.1 BS_4QW2S1Q8 0.744410140592888 NA NA NA no change NA NA NA 4:42018170 4:63474138 ARRIBA frameshift 10 0 high [INTRACHROMOSOMAL[chr4:21.38Mb]],inversion SLC30A9 NA AC093730.1 NA NA NA NA NA NA -SLC30A9--AC093730.1 BS_MX23ZY0Y 1.20234746339972 NA NA NA no change NA NA NA 4:42018170 4:63474138 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr4:21.38Mb]],inversion SLC30A9 NA AC093730.1 NA NA NA NA NA NA -SLC30A9--AC093730.1 BS_MX23ZY0Y 1.20234746339972 NA NA NA no change NA NA NA 4:42001780 4:63474138 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr4:21.38Mb]],inversion SLC30A9 NA AC093730.1 NA NA NA NA NA NA -SLC30A9--AC093730.1 BS_P9JP6JFA 1.21767417067841 NA NA NA no change NA NA NA 4:42018170 4:63474138 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr4:21.38Mb]],inversion SLC30A9 NA AC093730.1 NA NA NA NA NA NA -SLC30A9--AC093730.1 BS_P9JP6JFA 1.21767417067841 NA NA NA no change NA NA NA 4:42001780 4:63474138 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr4:21.38Mb]],inversion SLC30A9 NA AC093730.1 NA NA NA NA NA NA -SLC30A9--AC093730.1(126544)/TECRL(654435) BS_4QW2S1Q8 0.744410140592888 NA NA -0.482914000197048 no change NA NA no change 4:42018170 4:63620822 ARRIBA frameshift 3 0 medium [],inversion SLC30A9 NA AC093730.1 TECRL NA NA NA NA NA -SLC30A9--AC093730.1(126544)/TECRL(654435) BS_MX23ZY0Y 1.20234746339972 NA NA -0.482914000197048 no change NA NA no change 4:42018170 4:63620822 ARRIBA frameshift 3 0 high [],inversion SLC30A9 NA AC093730.1 TECRL NA NA NA NA NA -SLC30A9--AC093730.1(126544)/TECRL(654435) BS_P9JP6JFA 1.21767417067841 NA NA -0.482914000197048 no change NA NA no change 4:42018170 4:63620822 ARRIBA frameshift 3 1 high [],inversion SLC30A9 NA AC093730.1 TECRL NA NA NA NA NA -SLC30A9--AC093730.1(54)/TECRL(780925) BS_MX23ZY0Y 1.20234746339972 NA NA -0.482914000197048 no change NA NA no change 4:42001780 4:63494332 ARRIBA frameshift 1 0 low [],inversion SLC30A9 NA AC093730.1 TECRL NA NA NA NA NA -SLC30A9--LIMCH1 BS_YCREDZTJ -0.344157503641091 0.305944101161895 NA NA no change no change NA NA 4:42001780 4:41657262 ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr4:0.29Mb]],inversion/3'-3' SLC30A9 NA LIMCH1 NA NA NA NA NA NA -SLC35D2--ADGRB3(86712)/LMBRD1(199579) BS_FW5ECXXK -0.976734108415737 0.346110024319294 NA -0.97444609931857 no change no change NA no change 9:96336717 6:69476223 ARRIBA frameshift 4 0 medium [],translocation SLC35D2 NA ADGRB3 LMBRD1 NA NA NA NA NA -SLC37A3--KLRG2 BS_GYA4V1RD 0.484696668175029 0.593371618686912 NA NA no change no change NA NA 7:140382438 7:139453092 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:0.81Mb]],inversion/5'-5' SLC37A3 NA KLRG2 NA NA NA NA NA NA -SLC38A6--MNAT1 BS_PKW05VZV -2.00222862784726 -0.241674590375784 NA NA differentially expressed no change NA NA 14:61052135 14:60968229 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr14:0.01Mb],LOCAL_REARRANGEMENT:+:[11161]],duplication SLC38A6 NA MNAT1 NA NA Oncogene NA NA NA -SLC3A2--AP000721.2 BS_SXCZ3CXN 0.83525116728063 NA NA NA no change NA NA NA 11:62881916 11:64103194 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr11:1.15Mb]],inversion/3'-3' SLC3A2 NA AP000721.2 NA NA NA NA NA NA -SLC41A2--ALDH1L2 BS_A14Z8BBK 2.65499839939546 1.66608783843627 NA NA differentially expressed no change NA NA 12:104958088 12:105068884 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_REARRANGEMENT:-:[61040]],duplication SLC41A2 NA ALDH1L2 NA NA NA NA NA NA -SLC41A2--ALDH1L2 BS_A14Z8BBK 2.65499839939546 1.66608783843627 NA NA differentially expressed no change NA NA 12:104958190 12:105068884 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_REARRANGEMENT:-:[61040]],duplication SLC41A2 NA ALDH1L2 NA NA NA NA NA NA -SLC41A2--RBM19(107970)/AC010183.1(2792) BS_TRKH2SPE 5.0456770530839 -0.188273390497147 NA NA differentially expressed no change NA NA 12:104958088 12:114074341 ARRIBA other 3 0 high [],duplication SLC41A2 NA RBM19 AC010183.1 NA NA NA NA NA -SLC43A3--RPS4XP13 BS_W9AT0MR7 3.93726401969091 39.4011012503806 NA NA differentially expressed differentially expressed NA NA 11:57423982 11:57577082 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr11:0.15Mb]],duplication SLC43A3 NA RPS4XP13 NA NA NA NA NA NA -SLC43A3--RPS4XP13 BS_W9AT0MR7 3.93726401969091 39.4011012503806 NA NA differentially expressed differentially expressed NA NA 11:57425541 11:57577082 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr11:0.15Mb]],duplication SLC43A3 NA RPS4XP13 NA NA NA NA NA NA -SLC44A1--PRKCA BS_KVAJYZ6F 1.06824580077447 3.95127317556802 NA NA no change differentially expressed NA NA 9:105385502 17:66732688 ARRIBA in-frame 158 31 high [ChimerPub,Mitelman,INTERCHROMOSOMAL[chr9--chr17]],translocation SLC44A1 NA PRKCA NA NA Kinase NA NA NA -SLC44A1--TMBIM6 BS_DBDXCXT5 -0.185117333544871 -0.110790636316793 NA NA no change no change NA NA 9:105299309 12:49752464 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr9--chr12]],translocation SLC44A1 NA TMBIM6 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_0T17SY47 0.297144919202713 0.297144919202713 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_1T19NFJ8 0.584918777072053 0.584918777072053 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 7 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_258RRGDM 0.716870612831474 0.716870612831474 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_2XD3MNKD -0.232602005214016 -0.232602005214016 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 12 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_3BVVWHP5 0.0870315692075401 0.0870315692075401 NA NA no change no change NA NA 2:161804595 2:161620915 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_3EVSN5QD 1.06487736625105 1.06487736625105 NA NA no change no change NA NA 2:161710751 2:161620915 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_3T6X4BPC 0.630979622711424 0.630979622711424 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_3XY76V8T 0.188102415257025 0.188102415257025 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_4GTESTSE -0.53037630336134 -0.53037630336134 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_5PEFNDCY 0.280831610046985 0.280831610046985 NA NA no change no change NA NA 2:161863062 2:161854970 ARRIBA in-frame 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_BKR4E30C -0.994700921335425 -0.994700921335425 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_CVGFNCBJ 1.01183079395712 1.01183079395712 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_ERJAJ0KA -0.355867159275422 -0.355867159275422 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_F4E8R9VY -0.147281141025016 -0.147281141025016 NA NA no change no change NA NA 2:161710751 2:161620915 ARRIBA other 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_FJZPQZ2C -0.287994448116971 -0.287994448116971 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_GNV89A5P -1.01619754497013 -1.01619754497013 NA NA no change no change NA NA 2:161624566 2:161620915 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_HHPA8NJ2 0.150296594631527 0.150296594631527 NA NA no change no change NA NA 2:161710751 2:161620915 ARRIBA other 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_JXNZYGCR 0.191072665764563 0.191072665764563 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_MF47B9ZW 1.3334660494293 1.3334660494293 NA NA no change no change NA NA 2:161882444 2:161872293 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_NKRYMHEP -0.0811303465198499 -0.0811303465198499 NA NA no change no change NA NA 2:161710751 2:161620915 ARRIBA other 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_NT9NZYFD 0.241820637205516 0.241820637205516 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 15 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_NYS8TRCB 0.0919019269898003 0.0919019269898003 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_V3Z3DB4N -0.117616117470834 -0.117616117470834 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 3 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_VTJ9ESSV 0.747121025184694 0.747121025184694 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_W18SF91A -0.998967488745208 -0.998967488745208 NA NA no change no change NA NA 2:161894825 2:161872293 ARRIBA frameshift 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A10--SLC4A10 BS_ZR96A4FH 1.39763629222018 1.39763629222018 NA NA no change no change NA NA 2:161901011 2:161872293 ARRIBA frameshift 16 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA -SLC4A4--KIAA2026 BS_K2FHZGTK 3.5032359476307 2.35490429647871 NA NA differentially expressed differentially expressed NA NA 4:71187401 9:5988545 ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr4--chr9]],translocation SLC4A4 NA KIAA2026 NA NA NA NA NA NA -SLC4A4--RNU4ATAC9P(31766)/RNU6ATAC5P(29679) BS_P0QF87WC 0.149171827914806 NA NA NA no change NA NA NA 4:71555208 4:72997069 ARRIBA frameshift 2 0 medium [],deletion SLC4A4 NA RNU4ATAC9P RNU6ATAC5P NA NA NA NA NA -SLC4A4--RNU4ATAC9P(31766)/RNU6ATAC5P(29679) BS_WJ9H4NZZ 1.19399749725524 NA NA NA no change NA NA NA 4:71555208 4:72997069 ARRIBA frameshift 3 0 high [],deletion SLC4A4 NA RNU4ATAC9P RNU6ATAC5P NA NA NA NA NA -SLC4A4--RNU4ATAC9P(3918)/RNU6ATAC5P(57527) BS_WJ9H4NZZ 1.19399749725524 NA NA NA no change NA NA NA 4:71555208 4:72969221 ARRIBA frameshift 2 0 medium [],deletion SLC4A4 NA RNU4ATAC9P RNU6ATAC5P NA NA NA NA NA -SLC4A7--ST6GAL1 BS_FAQQ0GCQ 5.26926106646103 3.48083817538717 NA NA differentially expressed differentially expressed NA NA 3:27411642 3:187042771 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr3:159.45Mb]],duplication/5'-5' SLC4A7 NA ST6GAL1 NA NA Oncogene NA NA NA -SLC5A3--MIR99AHG BS_Z8F3GM85 1.49527263261642 0.306522241932972 NA NA no change no change NA NA 21:34073745 21:16181591 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr21:17.45Mb]],duplication SLC5A3 NA MIR99AHG NA NA NA NA NA NA -SLC5A3--MIR99AHG BS_Z8F3GM85 1.49527263261642 0.306522241932972 NA NA no change no change NA NA 21:34073745 21:16231056 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr21:17.45Mb]],duplication SLC5A3 NA MIR99AHG NA NA NA NA NA NA -SLC6A16(5851)/AC011450.1(541)--NKPD1 BS_JRYJGYC4 1.00025415780375 7.60313229017344 NA NA no change differentially expressed NA NA 19:49331076 19:45155916 ARRIBA other 2 0 high [],deletion SLC6A16 AC011450.1 NKPD1 NA NA NA NA NA NA -SLC6A8--SNORD2(264551)/MIR3924(443897) BS_M0QYNVK8 1.29559724145548 NA NA NA no change NA NA NA X:153694889 10:56860582 ARRIBA frameshift 8 0 medium [],translocation SLC6A8 NA SNORD2 MIR3924 NA NA NA NA NA -SLC9A1--CXXC5 BS_KZPR01BD 0.145488180522553 0.941166930756793 NA NA no change no change NA NA 1:27109527 5:139680364 ARRIBA frameshift 7 2 high [INTERCHROMOSOMAL[chr1--chr5]],translocation SLC9A1 NA CXXC5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -SLC9A1--CXXC5 BS_KZPR01BD 0.145488180522553 0.941166930756793 NA NA no change no change NA NA 1:27113826 5:139680364 ARRIBA frameshift 3 1 medium [INTERCHROMOSOMAL[chr1--chr5]],translocation SLC9A1 NA CXXC5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -SLC9A1--CXXC5 BS_KZPR01BD 0.145488180522553 0.941166930756793 NA NA no change no change NA NA 1:27153983 5:139680364 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr1--chr5]],translocation SLC9A1 NA CXXC5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -SLC9A8--ABCB5 BS_FAVRBEW7 0.125832118825987 -0.258532823184195 NA NA no change no change NA NA 20:49823141 7:20669998 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr20--chr7]],translocation/5'-5' SLC9A8 NA ABCB5 NA NA Oncogene NA NA NA -SLC9B1--SLC9B1 BS_M1T1K5WV 2.47152139529548 2.47152139529548 NA NA differentially expressed differentially expressed NA NA 4:102906536 4:102949427 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing SLC9B1 NA SLC9B1 NA NA NA NA NA NA -SLC9C2--SLC9C2 BS_4NWHYH53 2.21952186272945 2.21952186272945 NA NA differentially expressed differentially expressed NA NA 1:173573182 1:173598032 ARRIBA frameshift 5 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.10Mb]],duplication/non-canonical_splicing SLC9C2 NA SLC9C2 NA NA NA NA NA NA -SLC9C2--SLC9C2 BS_6T4JGBGY 2.23481724722526 2.23481724722526 NA NA differentially expressed differentially expressed NA NA 1:173573182 1:173598032 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.10Mb]],duplication/non-canonical_splicing SLC9C2 NA SLC9C2 NA NA NA NA NA NA -SLC9C2--SLC9C2 BS_8Q77HZ4R 3.62738776343052 3.62738776343052 NA NA differentially expressed differentially expressed NA NA 1:173573182 1:173598032 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.10Mb]],duplication/non-canonical_splicing SLC9C2 NA SLC9C2 NA NA NA NA NA NA -SLC9C2--SLC9C2 BS_NQFH3GZH 3.01542868115432 3.01542868115432 NA NA differentially expressed differentially expressed NA NA 1:173573182 1:173598032 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.10Mb]],duplication/non-canonical_splicing SLC9C2 NA SLC9C2 NA NA NA NA NA NA -SLC9C2--SLC9C2 BS_PKK3BZRG 8.85650860824617 8.85650860824617 NA NA differentially expressed differentially expressed NA NA 1:173573182 1:173587830 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.10Mb]],duplication/non-canonical_splicing SLC9C2 NA SLC9C2 NA NA NA NA NA NA -SLC9C2--SLC9C2 BS_QXKRN6CR 3.25416064722943 3.25416064722943 NA NA differentially expressed differentially expressed NA NA 1:173573182 1:173598032 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.10Mb]],duplication/non-canonical_splicing SLC9C2 NA SLC9C2 NA NA NA NA NA NA -SLCO1A2--SLCO1A2 BS_1T19NFJ8 1.71068584631533 1.71068584631533 NA NA no change no change NA NA 12:21292164 12:21306988 ARRIBA in-frame 26 3 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA -SLCO1A2--SLCO1A2 BS_23W9EPFE 0.148548894917847 0.148548894917847 NA NA no change no change NA NA 12:21292164 12:21306988 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA -SLCO1A2--SLCO1A2 BS_2XD3MNKD 1.66614309019858 1.66614309019858 NA NA no change no change NA NA 12:21292164 12:21306988 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA -SLCO1A2--SLCO1A2 BS_39CGACC7 0.891496413688425 0.891496413688425 NA NA no change no change NA NA 12:21292164 12:21306988 ARRIBA in-frame 14 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA -SLCO1A2--SLCO1A2 BS_92VDQ0NE 0.946934410365326 0.946934410365326 NA NA no change no change NA NA 12:21292164 12:21306988 ARRIBA in-frame 17 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA -SLCO1A2--SLCO1A2 BS_9V633J1X -1.17311785073569 -1.17311785073569 NA NA no change no change NA NA 12:21292164 12:21306988 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA -SLCO1A2--SLCO1A2 BS_CREQ97QC 0.301686781886266 0.301686781886266 NA NA no change no change NA NA 12:21292164 12:21304573 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA -SLCO1A2--SLCO1A2 BS_HCP5C912 0.1595502948077 0.1595502948077 NA NA no change no change NA NA 12:21292164 12:21306988 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA -SLCO1A2--SLCO1A2 BS_JXNZYGCR 0.581571077569219 0.581571077569219 NA NA no change no change NA NA 12:21292164 12:21306988 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA -SLCO1A2--SLCO1A2 BS_M15PW2N0 -1.86674091664165 -1.86674091664165 NA NA no change no change NA NA 12:21292164 12:21306988 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA -SLCO1A2--SLCO1A2 BS_ME3HKN2C 0.420447447320564 0.420447447320564 NA NA no change no change NA NA 12:21292164 12:21306988 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA -SLCO1A2--SLCO1A2 BS_QC3XCE6X 0.122739585951429 0.122739585951429 NA NA no change no change NA NA 12:21292164 12:21306988 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA -SLCO1A2--SLCO1A2 BS_W18SF91A 0.994180492788674 0.994180492788674 NA NA no change no change NA NA 12:21292164 12:21306988 ARRIBA in-frame 17 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA -SLCO1A2--SLCO1A2 BS_WCRKYV0T 0.359481468736026 0.359481468736026 NA NA no change no change NA NA 12:21292164 12:21306988 ARRIBA in-frame 6 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA -SLCO1A2--SLCO1A2 BS_ZRM0W01M -0.246208416362426 -0.246208416362426 NA NA no change no change NA NA 12:21292164 12:21306988 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA -SLCO1B1(11232)/SLCO1A2(14122)--SLCO1A2 BS_KVNGNETA 27.7958139619425 -0.209281718400415 -0.209281718400415 NA differentially expressed no change no change NA 12:21250478 12:21275424 ARRIBA other 4 0 high [],duplication SLCO1B1 SLCO1A2 SLCO1A2 NA NA NA NA NA NA -SLCO3A1--SLCO3A1 BS_A1VEGWTR -1.31129196699104 -1.31129196699104 NA NA no change no change NA NA 15:92128489 15:92094881 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.32Mb]],duplication/non-canonical_splicing SLCO3A1 NA SLCO3A1 NA NA NA NA NA NA -SLCO3A1--SLCO3A1 BS_R7HZCZ8B 0.0732317952138899 0.0732317952138899 NA NA no change no change NA NA 15:92128489 15:92094881 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.32Mb]],duplication/non-canonical_splicing SLCO3A1 NA SLCO3A1 NA NA NA NA NA NA -SLCO5A1--AC022034.1(106405)/AC103778.1(65992) BS_R439VVPK 37.9948303577072 NA NA NA differentially expressed NA NA NA 8:69831767 8:53646705 ARRIBA frameshift 2 2 high [],inversion SLCO5A1 NA AC022034.1 AC103778.1 NA NA NA NA NA -SLCO5A1--AC022034.1(68876)/AC103778.1(103521) BS_R439VVPK 37.9948303577072 NA NA NA differentially expressed NA NA NA 8:69831767 8:53609176 ARRIBA frameshift 3 0 medium [],deletion SLCO5A1 NA AC022034.1 AC103778.1 NA NA NA NA NA -SLCO5A1--ATP6V1H BS_R439VVPK 37.9948303577072 -1.04223212437649 NA NA differentially expressed no change NA NA 8:69831767 8:53729234 ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr8:15.82Mb]],inversion/5'-5' SLCO5A1 NA ATP6V1H NA NA NA NA NA NA -SLIT1--SLIT1 BS_AG4H9S3J -0.0722312403012266 -0.0722312403012266 NA NA no change no change NA NA 10:97157818 10:97164890 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.19Mb]],duplication/non-canonical_splicing SLIT1 NA SLIT1 NA NA NA NA NA NA -SLIT3--AC011369.1 BS_1N9XZXGE 1.62374930858936 NA NA NA no change NA NA NA 5:169193479 5:168185198 ARRIBA frameshift 6 5 high [INTRACHROMOSOMAL[chr5:0.47Mb]],deletion SLIT3 NA AC011369.1 NA NA NA NA NA NA -SLIT3--AC011369.1 BS_1N9XZXGE 1.62374930858936 NA NA NA no change NA NA NA 5:169193479 5:168165179 ARRIBA frameshift 6 3 high [INTRACHROMOSOMAL[chr5:0.47Mb]],deletion SLIT3 NA AC011369.1 NA NA NA NA NA NA -SLIT3--AC011369.1 BS_1N9XZXGE 1.62374930858936 NA NA NA no change NA NA NA 5:169193479 5:168088308 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr5:0.47Mb]],deletion SLIT3 NA AC011369.1 NA NA NA NA NA NA -SLK--LHPP BS_84XCR9GG 2.07833094786557 -2.36020919574483 NA NA differentially expressed differentially expressed NA NA 10:103993133 10:124484139 ARRIBA frameshift 12 0 high [INTRACHROMOSOMAL[chr10:20.43Mb]],deletion SLK NA LHPP NA Kinase, Kinase NA NA NA NA -SLK--LHPP BS_84XCR9GG 2.07833094786557 -2.36020919574483 NA NA differentially expressed differentially expressed NA NA 10:103993133 10:124496961 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr10:20.43Mb]],deletion SLK NA LHPP NA Kinase, Kinase NA NA NA NA -SLMAP--KALRN BS_FAQQ0GCQ 0.908120134881195 0.511874071974098 NA NA no change no change NA NA 3:57757849 3:124395135 ARRIBA in-frame 6 1 high [INTRACHROMOSOMAL[chr3:66.15Mb]],deletion SLMAP NA KALRN NA NA Kinase NA NA NA -SLX4--PRKCB BS_6JHXXVR7 0.108347906197283 -2.27271414394107 NA NA no change differentially expressed NA NA 16:3588760 16:24219961 ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr16:20.22Mb]],deletion/3'-3' SLX4 NA PRKCB NA TumorSuppressorGene TumorSuppressorGene, CosmicCensus, Kinase NA NA NA -SLX4--PRKCB BS_KE56MMY0 0.728737644472622 -1.96626893041275 NA NA no change no change NA NA 16:3588760 16:24219961 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr16:20.22Mb]],deletion/3'-3' SLX4 NA PRKCB NA TumorSuppressorGene TumorSuppressorGene, CosmicCensus, Kinase NA NA NA -SLX4IP--ATP11A BS_Z8YZ6QGS 10.1552995659159 4.15816818281776 NA NA differentially expressed differentially expressed NA NA 20:10560820 13:112759993 ARRIBA frameshift 2 2 high [INTERCHROMOSOMAL[chr20--chr13]],translocation SLX4IP NA ATP11A NA NA NA NA NA NA -SMAD2--MRO BS_M0QYNVK8 2.66997401297741 0.642073926735686 NA NA differentially expressed no change NA NA 18:47930361 18:50809404 ARRIBA other 50 1 high [INTRACHROMOSOMAL[chr18:2.86Mb]],duplication SMAD2 NA MRO NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -SMAD2--MRO BS_M0QYNVK8 2.66997401297741 0.642073926735686 NA NA differentially expressed no change NA NA 18:47930800 18:50809404 ARRIBA other 22 0 high [INTRACHROMOSOMAL[chr18:2.86Mb]],duplication SMAD2 NA MRO NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -SMAD2--MRO BS_M0QYNVK8 2.66997401297741 0.642073926735686 NA NA differentially expressed no change NA NA 18:47930361 18:50806850 ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr18:2.86Mb]],duplication SMAD2 NA MRO NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -SMAD4(25829)/AC090330.1(47408)--LINC01630 BS_8D0NYM46 3.61872965034231 NA NA NA differentially expressed NA NA NA 18:51110874 18:51560593 ARRIBA other 2 0 medium [],deletion SMAD4 AC090330.1 LINC01630 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -SMAD4(25829)/AC090330.1(47408)--LINC01630 BS_DHA5FMVW 2.85954091161973 NA NA NA differentially expressed NA NA NA 18:51110874 18:51560593 ARRIBA other 2 0 medium [],deletion SMAD4 AC090330.1 LINC01630 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -SMAD4(25829)/AC090330.1(47408)--LINC01630 BS_M15PW2N0 3.98698547136972 NA NA NA differentially expressed NA NA NA 18:51110874 18:51560593 ARRIBA other 4 0 high [],deletion SMAD4 AC090330.1 LINC01630 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -SMAD4(25829)/AC090330.1(47408)--LINC01630 BS_XHCYEE2S 3.6929456429483 NA NA NA differentially expressed NA NA NA 18:51110874 18:51560593 ARRIBA other 1 1 high [],deletion SMAD4 AC090330.1 LINC01630 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -SMARCA4--WIZ BS_K17VQECG 0.0735396990278778 2.53806342233824 NA NA no change differentially expressed NA NA 19:10985405 19:15427533 ARRIBA in-frame 16 3 high [INTRACHROMOSOMAL[chr19:4.35Mb]],inversion SMARCA4 NA WIZ NA TumorSuppressorGene, CosmicCensus, Oncogene TranscriptionFactor NA NA NA -SMARCA4--WIZ BS_K17VQECG 0.0735396990278778 2.53806342233824 NA NA no change differentially expressed NA NA 19:10985405 19:15428508 ARRIBA in-frame 2 3 high [INTRACHROMOSOMAL[chr19:4.35Mb]],inversion SMARCA4 NA WIZ NA TumorSuppressorGene, CosmicCensus, Oncogene TranscriptionFactor NA NA NA -SMG1--C16orf96 BS_401R3KV0 0.781942473578665 7.20082434074301 NA NA no change differentially expressed NA NA 16:18925950 16:4571561 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr16:14.20Mb]],inversion SMG1 NA C16orf96 NA Kinase, Kinase NA NA NA NA -SMG1--OR8B10P(1276)/AP000916.2(13107) BS_91VYM11A 1.06033108329153 -0.282211320979534 NA NA no change no change NA NA 16:18828106 11:124518518 ARRIBA frameshift 2 0 low [],translocation SMG1 NA OR8B10P AP000916.2 Kinase, Kinase NA NA NA NA -SMG1P3--AC097655.1(41208)/LINC02496(670792) BS_P9JP6JFA 3.7255132574342 NA NA NA differentially expressed NA NA NA 16:21478091 4:60079794 ARRIBA other 3 0 medium [],translocation SMG1P3 NA AC097655.1 LINC02496 NA NA NA NA NA -SMG5--DDR2 BS_KE56MMY0 0.0599574881226042 6.20944198890505 NA NA no change differentially expressed NA NA 1:156272320 1:162755756 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:6.35Mb]],duplication/5'-5' SMG5 NA DDR2 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA -SMG6--AC015908.2(148834)/RN7SL601P(127726) BS_23QW0BBA -0.485293613320469 NA NA -0.0406598077327238 no change NA NA no change 17:2236492 17:11029729 ARRIBA frameshift 3 0 medium [],inversion SMG6 NA AC015908.2 RN7SL601P Oncogene NA NA NA NA -SMG6--AC144836.1(14390)/BHLHA9(2169) BS_WKESC3XN -0.404517517065466 3.18349697813757 NA 4.48635731171535 no change differentially expressed NA differentially expressed 17:2212412 17:1268390 ARRIBA other 5 2 medium [],inversion SMG6 NA AC144836.1 BHLHA9 Oncogene NA NA TranscriptionFactor NA -SMG7--SMG7 BS_7G42J2SK 0.605586339515548 0.605586339515548 NA NA no change no change NA NA 1:183551190 1:183533164 ARRIBA in-frame 3 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing SMG7 NA SMG7 NA NA NA NA NA NA -SMPDL3A(39699)/ATP5LP2(10259)--ERGIC1 BS_VNWKNRY4 -1.15457356257506 0.789861053527978 6.17551972644756 NA no change no change differentially expressed NA 6:122849419 5:172897002 ARRIBA other 1 0 low [],translocation SMPDL3A ATP5LP2 ERGIC1 NA NA NA NA NA NA -SMTNL2--HS3ST3A1 BS_M0QYNVK8 4.5940320378334 1.08434485934237 NA NA differentially expressed no change NA NA 17:4608379 17:13557702 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr17:8.89Mb]],deletion/5'-5' SMTNL2 NA HS3ST3A1 NA NA NA NA NA NA -SMURF2--SMURF2 BS_N5DVEJXT 1.16961967984134 1.16961967984134 NA NA no change no change NA NA 17:64561500 17:64578576 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.12Mb]],duplication/non-canonical_splicing SMURF2 NA SMURF2 NA NA NA NA NA NA -SMYD3--AL355860.1 BS_KE56MMY0 2.48855499334008 NA NA NA differentially expressed NA NA NA 1:245988394 1:150912242 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr1:94.84Mb]],inversion SMYD3 NA AL355860.1 NA Oncogene, TranscriptionFactor NA NA NA NA -SNAP25-AS1--SNAP25-AS1 BS_K5802F84 -0.133088729333144 -0.133088729333144 NA NA no change no change NA NA 20:10185808 20:10209765 ARRIBA other 4 1 high [SELFIE,INTRACHROMOSOMAL[chr20:0.35Mb]],duplication SNAP25-AS1 NA SNAP25-AS1 NA NA NA NA NA NA -SNAP91--CEP162(86249)/LINC01611(107144) BS_QF5VVZX5 0.823489676046957 0.31037217924898 NA -0.224804754720179 no change no change NA no change 6:83656754 6:84313884 ARRIBA frameshift 5 0 medium [],duplication SNAP91 NA CEP162 LINC01611 NA NA NA NA NA -SNAPC3--ELF5 BS_M0QYNVK8 1.34022243254341 0.0824844057942329 NA NA no change no change NA NA 9:15433636 11:34505753 ARRIBA frameshift 13 0 high [INTERCHROMOSOMAL[chr9--chr11]],translocation SNAPC3 NA ELF5 NA Oncogene TranscriptionFactor NA NA NA -SNAPC3--ELF5 BS_S6S7SK3P 2.23366081709083 7.84388952719729 NA NA differentially expressed differentially expressed NA NA 9:15433636 11:34505753 ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr9--chr11]],translocation SNAPC3 NA ELF5 NA Oncogene TranscriptionFactor NA NA NA -SNAPC3--KIF21A BS_VJ2S5DVS 0.694601976835736 -1.58729756116538 NA NA no change no change NA NA 9:15462990 12:39304938 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr9--chr12]],translocation SNAPC3 NA KIF21A NA Oncogene NA NA NA NA -SNAPC3--RPL7P33(60008)/SNAPC3(562) BS_WSQMAA33 2.10034611679263 -0.0780591310994776 NA 2.10034611679263 differentially expressed no change NA differentially expressed 9:15433636 9:15422142 ARRIBA frameshift 9 0 medium [],duplication SNAPC3 NA RPL7P33 SNAPC3 Oncogene NA NA Oncogene NA -SNCAIP--MGC32805(76798)/LINC02201(73067) BS_NZ71XCG3 5.77766467125673 -0.353302503913127 NA NA differentially expressed no change NA NA 5:122403865 5:122555885 ARRIBA frameshift 10 1 medium [],inversion SNCAIP NA MGC32805 LINC02201 Oncogene NA NA NA NA -SNCAIP--SNCAIP BS_NKRYMHEP 4.93595944420471 4.93595944420471 NA NA differentially expressed differentially expressed NA NA 5:122403865 5:122388567 ARRIBA frameshift 11 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.15Mb]],duplication/non-canonical_splicing SNCAIP NA SNCAIP NA Oncogene Oncogene NA NA NA -SND1--AFF2 BS_JT82QGXF 1.69059254610637 3.87895247917512 NA NA no change differentially expressed NA NA 7:127904819 X:148809876 ARRIBA in-frame 3 1 high [INTERCHROMOSOMAL[chr7--chrX]],translocation SND1 NA AFF2 NA CosmicCensus NA NA NA NA -SND1--DGKI(2264)/CREB3L2(25623) BS_593HEWBF 0.850824686732481 1.60357604798287 NA 5.83253567966169 no change no change NA differentially expressed 7:127991056 7:137849356 ARRIBA frameshift 5 0 high [],deletion SND1 NA DGKI CREB3L2 CosmicCensus NA NA CosmicCensus, Oncogene, TranscriptionFactor NA -SND1--IQUB BS_6JHXXVR7 2.81321203671249 9.19070804553794 NA NA differentially expressed differentially expressed NA NA 7:127721400 7:123496906 ARRIBA frameshift 75 4 high [INTRACHROMOSOMAL[chr7:4.12Mb]],inversion SND1 NA IQUB NA CosmicCensus NA NA NA NA -SND1--IQUB BS_6JHXXVR7 2.81321203671249 9.19070804553794 NA NA differentially expressed differentially expressed NA NA 7:127721400 7:123469384 ARRIBA in-frame 15 2 high [INTRACHROMOSOMAL[chr7:4.12Mb]],inversion SND1 NA IQUB NA CosmicCensus NA NA NA NA -SND1--IQUB BS_6JHXXVR7 2.81321203671249 9.19070804553794 NA NA differentially expressed differentially expressed NA NA 7:127721400 7:123457566 ARRIBA in-frame 9 1 medium [INTRACHROMOSOMAL[chr7:4.12Mb]],inversion SND1 NA IQUB NA CosmicCensus NA NA NA NA -SND1--IQUB BS_6JHXXVR7 2.81321203671249 9.19070804553794 NA NA differentially expressed differentially expressed NA NA 7:127721400 7:123479970 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr7:4.12Mb]],inversion SND1 NA IQUB NA CosmicCensus NA NA NA NA -SND1--IQUB BS_6JHXXVR7 2.81321203671249 9.19070804553794 NA NA differentially expressed differentially expressed NA NA 7:127721400 7:123461605 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr7:4.12Mb]],inversion SND1 NA IQUB NA CosmicCensus NA NA NA NA -SND1--IQUB BS_6JHXXVR7 2.81321203671249 9.19070804553794 NA NA differentially expressed differentially expressed NA NA 7:127721400 7:123465009 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr7:4.12Mb]],inversion SND1 NA IQUB NA CosmicCensus NA NA NA NA -SND1--LHFPL3 BS_HX0S30NE 2.16067651494264 2.54326872063027 NA NA differentially expressed differentially expressed NA NA 7:127904819 7:104353468 ARRIBA frameshift 14 1 high [INTRACHROMOSOMAL[chr7:22.74Mb]],inversion/3'-3' SND1 NA LHFPL3 NA CosmicCensus NA NA NA NA -SND1--LHFPL3 BS_YB2RXRHT 0.919816755823727 2.36041102225372 NA NA no change differentially expressed NA NA 7:127904819 7:104353468 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr7:22.74Mb]],inversion/3'-3' SND1 NA LHFPL3 NA CosmicCensus NA NA NA NA -SND1--PTN BS_GYA4V1RD 1.11093785235806 1.15688245419917 NA NA no change no change NA NA 7:127721400 7:137254974 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:9.13Mb]],inversion SND1 NA PTN NA CosmicCensus Oncogene NA NA NA -SNHG1--HPS5 BS_P7EY9DXG 0.422337223357117 1.63302691131187 NA NA no change no change NA NA 11:62854887 11:18292938 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr11:44.53Mb]],deletion SNHG1 NA HPS5 NA NA NA NA NA NA -SNHG14--B2M BS_DPF1CX0G -0.101739260834162 0.705748193771605 NA NA no change no change NA NA 15:24992169 15:44715615 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr15:19.29Mb]],deletion SNHG14 NA B2M NA NA CosmicCensus, Oncogene NA NA NA -SNHG15(419)/CCM2(12095)--MYO1G BS_QF5VVZX5 -1.7144272229199 2.60889701355409 -1.32752744436843 NA no change differentially expressed no change NA 7:44987380 7:44978993 ARRIBA other 1 1 medium [],inversion SNHG15 CCM2 MYO1G NA NA NA NA NA NA -SNORA68(52065)/uc_338(54547)--DACH1 BS_QPPPGYP4 20.0152454906451 6.5328196188946 3.43288756830833 NA differentially expressed differentially expressed differentially expressed NA 13:72512666 13:71681910 ARRIBA other 6 3 medium [],deletion SNORA68 uc_338 DACH1 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -SNORA68(52065)/uc_338(54547)--DACH1 BS_Y8D1F5WW 19.2155955711856 7.8408297899779 4.26809291605157 NA differentially expressed differentially expressed differentially expressed NA 13:72512666 13:71681910 ARRIBA other 3 3 medium [],deletion SNORA68 uc_338 DACH1 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -SNRNP200--UBR4 BS_ZZWMD6FA 0.774537816191933 -0.891145726586502 NA NA no change no change NA NA 2:96281838 1:19180134 ARRIBA frameshift 1 2 medium [INTERCHROMOSOMAL[chr2--chr1]],translocation SNRNP200 NA UBR4 NA NA NA NA NA NA -SNRNP70--AXL BS_XG0DBWVT 0.22047424686926 2.93752849008954 NA NA no change differentially expressed NA NA 19:49090520 19:41248514 ARRIBA in-frame 69 3 high [INTRACHROMOSOMAL[chr19:7.82Mb]],duplication SNRNP70 NA AXL NA NA Kinase, Oncogene, Kinase NA NA NA -SNRNP70--AXL BS_XG0DBWVT 0.22047424686926 2.93752849008954 NA NA no change differentially expressed NA NA 19:49090520 19:41252351 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr19:7.82Mb]],duplication SNRNP70 NA AXL NA NA Kinase, Oncogene, Kinase NA NA NA -SNRPD3--FRMPD1 BS_AZN38B7V 0.303300575684859 4.87019464107085 NA NA no change differentially expressed NA NA 22:24568176 9:37692638 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr22--chr9]],translocation SNRPD3 NA FRMPD1 NA NA NA NA NA NA -SNTB1--AC104233.1(70265)/AC104036.1(106828) BS_X23724NJ 6.51779075670577 NA NA NA differentially expressed NA NA NA 8:120693692 8:121777896 ARRIBA frameshift 27 3 high [],duplication SNTB1 NA AC104233.1 AC104036.1 NA NA NA NA NA -SNTB1--AL355838.1 BS_X23724NJ 6.51779075670577 NA NA NA differentially expressed NA NA NA 8:120693692 14:81885275 ARRIBA frameshift 21 0 medium [INTERCHROMOSOMAL[chr8--chr14]],translocation SNTB1 NA AL355838.1 NA NA NA NA NA NA -SNTB1--SNTB1 BS_X23724NJ 6.51779075670577 6.51779075670577 NA NA differentially expressed differentially expressed NA NA 8:120693692 8:120812069 ARRIBA in-frame 104 14 high [SELFIE,INTRACHROMOSOMAL[chr8:0.28Mb]],duplication/non-canonical_splicing SNTB1 NA SNTB1 NA NA NA NA NA NA -SNTB2--AC109462.1(4760)/MMP2(31852) BS_11WY983P 4.68887942428743 NA NA 5.10226346998538 differentially expressed NA NA differentially expressed 16:69187746 16:55357848 ARRIBA frameshift 2 0 medium [],duplication SNTB2 NA AC109462.1 MMP2 NA NA NA Oncogene NA -SNTG1--SNTG1 BS_1T19NFJ8 0.706057968167659 0.706057968167659 NA NA no change no change NA NA 8:50553179 8:50530177 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_2XD3MNKD 0.973520181770181 0.973520181770181 NA NA no change no change NA NA 8:50553179 8:50530177 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_398KYV92 1.70570419043081 1.70570419043081 NA NA no change no change NA NA 8:50502880 8:50438543 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_6MY8W3H0 2.10499706415872 2.10499706415872 NA NA differentially expressed differentially expressed NA NA 8:50553179 8:50502778 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_A7MC2KR2 0.569650250342225 0.569650250342225 NA NA no change no change NA NA 8:50553179 8:50530177 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_CREQ97QC 1.49751402137056 1.49751402137056 NA NA no change no change NA NA 8:50502880 8:50438543 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_CVGFNCBJ 1.19938761828507 1.19938761828507 NA NA no change no change NA NA 8:50502880 8:50438543 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_HCP5C912 1.60746817703147 1.60746817703147 NA NA no change no change NA NA 8:50553179 8:50502778 ARRIBA in-frame 15 3 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_K5802F84 2.10765653543277 2.10765653543277 NA NA differentially expressed differentially expressed NA NA 8:50502880 8:50438543 ARRIBA frameshift 18 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_N6NE6B3W 2.07012273574359 2.07012273574359 NA NA differentially expressed differentially expressed NA NA 8:50502880 8:50438543 ARRIBA frameshift 19 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_PQ6QEVE8 2.14454948274678 2.14454948274678 NA NA differentially expressed differentially expressed NA NA 8:50536808 8:50502778 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_PQ7CQFYR 2.57435891925764 2.57435891925764 NA NA differentially expressed differentially expressed NA NA 8:50502880 8:50438543 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_PZVHMSYN 0.172434359773546 0.172434359773546 NA NA no change no change NA NA 8:50553179 8:50530177 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_QWTE1CWR 2.56362456962438 2.56362456962438 NA NA differentially expressed differentially expressed NA NA 8:50708978 8:50704600 ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_S7CZY2CH 4.96107369992645 4.96107369992645 NA NA differentially expressed differentially expressed NA NA 8:50708978 8:50704600 ARRIBA in-frame 21 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_W18SF91A -0.466620918845468 -0.466620918845468 NA NA no change no change NA NA 8:50553179 8:50502778 ARRIBA in-frame 4 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_W9AT0MR7 -0.687492531236646 -0.687492531236646 NA NA no change no change NA NA 8:50502880 8:50438543 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_WCRKYV0T 2.61046191373238 2.61046191373238 NA NA differentially expressed differentially expressed NA NA 8:50502880 8:50438543 ARRIBA frameshift 18 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG1--SNTG1 BS_ZR96A4FH 2.02365169442295 2.02365169442295 NA NA differentially expressed differentially expressed NA NA 8:50502880 8:50438543 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA -SNTG2--NUMA1 BS_Z72QAZC7 2.79542421959534 1.25143231743574 NA NA differentially expressed no change NA NA 2:1223344 11:72013518 ARRIBA other 2 1 medium [INTERCHROMOSOMAL[chr2--chr11]],translocation SNTG2 NA NUMA1 NA NA CosmicCensus, Oncogene NA NA NA -SNTG2--RNU6-546P(86889)/LINC01876(594114) BS_KVNGNETA -0.338449469491417 NA NA NA no change NA NA NA 2:951068 2:155417416 ARRIBA frameshift 8 0 high [],inversion SNTG2 NA RNU6-546P LINC01876 NA NA NA NA NA -SNTG2--SNTG2 BS_M4TTKPNR 1.92053940137768 1.92053940137768 NA NA no change no change NA NA 2:1316375 2:1247327 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.42Mb]],duplication/non-canonical_splicing SNTG2 NA SNTG2 NA NA NA NA NA NA -SNTG2--SNTG2 BS_RSRPX3S8 3.68668889146149 3.68668889146149 NA NA differentially expressed differentially expressed NA NA 2:1316375 2:1247327 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.42Mb]],duplication/non-canonical_splicing SNTG2 NA SNTG2 NA NA NA NA NA NA -SNX15--AP000721.2 BS_FW5ECXXK -1.20397924565669 NA NA NA no change NA NA NA 11:65034962 11:64077016 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr11:0.92Mb]],inversion/3'-3' SNX15 NA AP000721.2 NA NA NA NA NA NA -SNX15--MACROD1 BS_FW5ECXXK -1.20397924565669 -2.40742512371681 NA NA no change differentially expressed NA NA 11:65034962 11:64077016 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr11:0.86Mb]],inversion SNX15 NA MACROD1 NA NA Oncogene NA NA NA -SNX16--AC025871.1 BS_1AYRM596 3.48818001811197 NA NA NA differentially expressed NA NA NA 8:81839612 8:28448954 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr8:53.34Mb]],inversion SNX16 NA AC025871.1 NA NA NA NA NA NA -SNX16--AC025871.1 BS_1AYRM596 3.48818001811197 NA NA NA differentially expressed NA NA NA 8:81839612 8:28455624 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:53.34Mb]],inversion SNX16 NA AC025871.1 NA NA NA NA NA NA -SNX22--PPHLN1 BS_JBGZ7HHZ -3.00671072434488 -1.91202357001171 NA NA differentially expressed no change NA NA 15:64155883 12:42362009 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr15--chr12]],translocation SNX22 NA PPHLN1 NA NA NA NA NA NA -SNX25--SNX25 BS_FEV5A0HN 1.36267787642291 1.36267787642291 NA NA no change no change NA NA 4:185288082 4:185258848 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.17Mb]],duplication/non-canonical_splicing SNX25 NA SNX25 NA NA NA NA NA NA -SNX30--KIAA1958 BS_KZPR01BD -0.156541837857366 7.22289290556319 NA NA no change differentially expressed NA NA 9:112817815 9:112645650 ARRIBA frameshift 2 0 low [YOSHIHARA_TCGA,GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr9:0.08Mb],LOCAL_REARRANGEMENT:+:[81441]],duplication SNX30 NA KIAA1958 NA NA NA NA NA TCGAFusion -SNX30--KIAA1958 BS_Z9ZS6ZS2 0.460299111878883 1.57067860034269 NA NA no change no change NA NA 9:112817815 9:112617871 ARRIBA frameshift 5 0 high [YOSHIHARA_TCGA,GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr9:0.08Mb],LOCAL_REARRANGEMENT:+:[81441]],duplication SNX30 NA KIAA1958 NA NA NA NA NA TCGAFusion -SNX9--AL024474.2 BS_1HQ76V6D -2.76882264484589 NA NA NA differentially expressed NA NA NA 6:157823446 6:144313145 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr6:13.37Mb]],inversion SNX9 NA AL024474.2 NA NA NA NA NA NA -SNX9--SNX9 BS_X59HSFGG 1.00566345671245 1.00566345671245 NA NA no change no change NA NA 6:157906212 6:157896827 ARRIBA in-frame 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.24Mb]],duplication/non-canonical_splicing SNX9 NA SNX9 NA NA NA NA NA NA -SNX9--UTRN BS_1HQ76V6D -2.76882264484589 2.25390962602385 NA NA differentially expressed differentially expressed NA NA 6:157823446 6:144313145 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr6:12.85Mb]],inversion/3'-3' SNX9 NA UTRN NA NA NA NA NA NA -SOD2--EIF2AK4 BS_N5B2CZMH -0.0316938360611439 -0.23032187666309 NA NA no change no change NA NA 6:159681176 15:40034242 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr6--chr15]],translocation SOD2 NA EIF2AK4 NA TumorSuppressorGene Kinase NA NA NA -SOD2--RAET1E-AS1 BS_NNPEC7W1 1.22917931295258 4.14619741676311 NA NA no change differentially expressed NA NA 6:159692715 6:149900538 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr6:9.75Mb]],deletion/5'-5' SOD2 NA RAET1E-AS1 NA TumorSuppressorGene NA NA NA NA -SOD2--RAET1E-AS1 BS_TM9MH0RP 2.22097531915907 2.94630120766246 NA NA differentially expressed differentially expressed NA NA 6:159692715 6:149900538 ARRIBA frameshift 42 4 medium [INTRACHROMOSOMAL[chr6:9.75Mb]],deletion/5'-5' SOD2 NA RAET1E-AS1 NA TumorSuppressorGene NA NA NA NA -SOD2--RAET1E-AS1 BS_ZVWE73JZ 1.87300673439663 2.66082219694778 NA NA no change differentially expressed NA NA 6:159692715 6:149900538 ARRIBA frameshift 36 0 medium [INTRACHROMOSOMAL[chr6:9.75Mb]],deletion/5'-5' SOD2 NA RAET1E-AS1 NA TumorSuppressorGene NA NA NA NA -SOGA3--NUS1(196728)/SLC35F1(158) BS_PKW05VZV 1.16707198262284 -0.892083451505194 NA 0.885002690411816 no change no change NA no change 6:127453844 6:117907368 ARRIBA other 2 0 low [],inversion SOGA3 NA NUS1 SLC35F1 NA NA NA NA NA -SOHLH2--CCDC169 BS_4FZS7TX4 3.55490959417271 6.08814020822558 NA NA differentially expressed differentially expressed NA NA 13:36189946 13:36256167 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr13:0.01Mb],LOCAL_REARRANGEMENT:-:[7393]],duplication SOHLH2 NA CCDC169 NA TranscriptionFactor NA NA NA NA -SOHLH2--CCDC169 BS_DGTPWJ59 2.27355471998821 5.87822324883849 NA NA differentially expressed differentially expressed NA NA 13:36201879 13:36256167 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr13:0.01Mb],LOCAL_REARRANGEMENT:-:[7393]],duplication SOHLH2 NA CCDC169 NA TranscriptionFactor NA NA NA NA -SORBS2--AC009126.1 BS_VNWKNRY4 3.308966994656 NA NA NA differentially expressed NA NA NA 4:185956196 5:96873378 ARRIBA other 4 1 high [INTERCHROMOSOMAL[chr4--chr5]],translocation SORBS2 NA AC009126.1 NA Oncogene NA NA NA NA -SORBS2--AC009126.1 BS_VNWKNRY4 3.308966994656 NA NA NA differentially expressed NA NA NA 4:185932936 5:96873378 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr4--chr5]],translocation SORBS2 NA AC009126.1 NA Oncogene NA NA NA NA -SORCS3--SORCS3 BS_HCP5C912 1.38114321605338 1.38114321605338 NA NA no change no change NA NA 10:105147796 10:105105397 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.62Mb]],duplication/non-canonical_splicing SORCS3 NA SORCS3 NA NA NA NA NA NA -SOX13--LINC01717(88986)/LINC01774(150284) BS_WKESC3XN 2.70453019250095 NA NA NA differentially expressed NA NA NA 1:204073711 1:208822170 ARRIBA other 2 1 high [],inversion SOX13 NA LINC01717 LINC01774 TranscriptionFactor NA NA NA NA -SOX5--DUSP16 BS_NB42PWZN 7.13664038262836 3.44118176512234 NA NA differentially expressed differentially expressed NA NA 12:23604387 12:12554659 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr12:10.97Mb]],deletion SOX5 NA DUSP16 NA Oncogene, TranscriptionFactor NA NA NA NA -SOX5--DUSP16 BS_Z7890YNR 5.72965727170595 3.03738167886622 NA NA differentially expressed differentially expressed NA NA 12:23604387 12:12521463 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr12:10.97Mb]],deletion SOX5 NA DUSP16 NA Oncogene, TranscriptionFactor NA NA NA NA -SOX9-AS1--SOX9-AS1 BS_7G42J2SK 0.0277583041968078 0.0277583041968078 NA NA no change no change NA NA 17:72081921 17:72085045 ARRIBA other 5 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing SOX9-AS1 NA SOX9-AS1 NA NA NA NA NA NA -SOX9-AS1--SOX9-AS1 BS_FBJ5Q54N -0.76145460616439 -0.76145460616439 NA NA no change no change NA NA 17:72185454 17:72186404 ARRIBA other 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication SOX9-AS1 NA SOX9-AS1 NA NA NA NA NA NA -SOX9-AS1--SOX9-AS1 BS_G63HYD6N 0.22283093467221 0.22283093467221 NA NA no change no change NA NA 17:72081921 17:72085045 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing SOX9-AS1 NA SOX9-AS1 NA NA NA NA NA NA -SOX9-AS1--SOX9-AS1 BS_N1E0H8YQ -1.4439239392621 -1.4439239392621 NA NA no change no change NA NA 17:72141685 17:72186404 ARRIBA other 2 1 medium [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication SOX9-AS1 NA SOX9-AS1 NA NA NA NA NA NA -SOX9-AS1--SOX9-AS1 BS_NGHK9RZP 0.966958126504595 0.966958126504595 NA NA no change no change NA NA 17:72081921 17:72085045 ARRIBA other 10 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing SOX9-AS1 NA SOX9-AS1 NA NA NA NA NA NA -SOX9-AS1--SOX9-AS1 BS_S7CZY2CH -1.16354217695171 -1.16354217695171 NA NA no change no change NA NA 17:72185454 17:72221873 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing SOX9-AS1 NA SOX9-AS1 NA NA NA NA NA NA -SPAG1--CASC19 BS_HE57E1RP 1.2873134989682 128.741148409275 NA NA no change differentially expressed NA NA 8:100225339 8:127169117 ARRIBA frameshift 10 0 high [INTRACHROMOSOMAL[chr8:26.81Mb]],inversion SPAG1 NA CASC19 NA NA NA NA NA NA -SPAG1--SPAG1 BS_KZPR01BD 2.35097183519686 2.35097183519686 NA NA differentially expressed differentially expressed NA NA 8:100231288 8:100213090 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing SPAG1 NA SPAG1 NA NA NA NA NA NA -SPAG17--SPAG17 BS_7G42J2SK 3.03434577804322 3.03434577804322 NA NA differentially expressed differentially expressed NA NA 1:117990861 1:118087008 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing SPAG17 NA SPAG17 NA NA NA NA NA NA -SPAG17--SPAG17 BS_CZ3NA7KV 3.13567666040353 3.13567666040353 NA NA differentially expressed differentially expressed NA NA 1:118039292 1:118087008 ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing SPAG17 NA SPAG17 NA NA NA NA NA NA -SPAG17--SPAG17 BS_EK5PCKY0 3.25760535419367 3.25760535419367 NA NA differentially expressed differentially expressed NA NA 1:117990861 1:118087008 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing SPAG17 NA SPAG17 NA NA NA NA NA NA -SPAG17--SPAG17 BS_FAVRBEW7 3.71904739203596 3.71904739203596 NA NA differentially expressed differentially expressed NA NA 1:118039292 1:118087008 ARRIBA frameshift 16 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing SPAG17 NA SPAG17 NA NA NA NA NA NA -SPAG17--SPAG17 BS_G63HYD6N 1.19960092259961 1.19960092259961 NA NA no change no change NA NA 1:118081101 1:118087008 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing SPAG17 NA SPAG17 NA NA NA NA NA NA -SPAG17--SPAG17 BS_NGHK9RZP 3.46048435936467 3.46048435936467 NA NA differentially expressed differentially expressed NA NA 1:118023304 1:118031867 ARRIBA in-frame 16 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing SPAG17 NA SPAG17 NA NA NA NA NA NA -SPAG17--SPAG17 BS_Z85M2R3N 3.91684936718051 3.91684936718051 NA NA differentially expressed differentially expressed NA NA 1:118039292 1:118087008 ARRIBA frameshift 19 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing SPAG17 NA SPAG17 NA NA NA NA NA NA -SPAG6--SPAG6 BS_BSV07M7Z 1.5813479023786 1.5813479023786 NA NA no change no change NA NA 10:22401277 10:22359411 ARRIBA frameshift 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr10:0.11Mb]],duplication SPAG6 NA SPAG6 NA NA NA NA NA NA -SPAG6--SPAG6 BS_KVNGNETA 2.29088793225851 2.29088793225851 NA NA differentially expressed differentially expressed NA NA 10:22401277 10:22359411 ARRIBA frameshift 8 1 medium [SELFIE,INTRACHROMOSOMAL[chr10:0.11Mb]],duplication SPAG6 NA SPAG6 NA NA NA NA NA NA -SPAG6--SPAG6 BS_PJPGVD62 3.75004169241554 3.75004169241554 NA NA differentially expressed differentially expressed NA NA 10:22401277 10:22359411 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.11Mb]],duplication SPAG6 NA SPAG6 NA NA NA NA NA NA -SPAG9--ZNF70 BS_Q2T9ZRM0 0.710858342937062 7.62799745479686 NA NA no change differentially expressed NA NA 17:51041501 22:23745219 ARRIBA frameshift 23 0 high [INTERCHROMOSOMAL[chr17--chr22]],translocation SPAG9 NA ZNF70 NA NA TranscriptionFactor NA NA NA -SPANXA2-OT1--AL844175.1 BS_M84H3KXA 80.6015624707529 NA NA NA differentially expressed NA NA NA X:141520519 X:140733470 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chrX:0.82Mb]],inversion SPANXA2-OT1 NA AL844175.1 NA NA NA NA NA NA -SPANXA2-OT1--AL844175.1 BS_M84H3KXA 80.6015624707529 NA NA NA differentially expressed NA NA NA X:141520519 X:140681303 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chrX:0.82Mb]],inversion SPANXA2-OT1 NA AL844175.1 NA NA NA NA NA NA -SPANXA2-OT1--CDR1(70754)/MIR320D2(70547) BS_WSQMAA33 64.3652660817226 1.0159058234819 NA NA differentially expressed no change NA NA X:141520519 X:140855625 ARRIBA other 3 0 medium [],inversion SPANXA2-OT1 NA CDR1 MIR320D2 NA NA NA NA NA -SPANXD(31480)/MAGEC3(108097)--SPANXA2-OT1 BS_5VQP0E6K 1.48923637044984 59.6899217338239 3.31385502117049 NA no change differentially expressed differentially expressed NA X:141730219 X:141648799 ARRIBA other 2 1 medium [],duplication SPANXD MAGEC3 SPANXA2-OT1 NA NA NA NA NA NA -SPANXD(31480)/MAGEC3(108097)--SPANXA2-OT1 BS_JTMXAMB7 -0.163073597426845 57.6055291707675 2.79238316067653 NA no change differentially expressed differentially expressed NA X:141730219 X:141648799 ARRIBA other 2 1 high [],duplication SPANXD MAGEC3 SPANXA2-OT1 NA NA NA NA NA NA -SPARC--LTBP4 BS_B7QS4DHK 2.65713908218208 5.39327070646788 NA NA differentially expressed differentially expressed NA NA 5:151664087 19:40623604 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr5--chr19]],translocation SPARC NA LTBP4 NA TumorSuppressorGene NA NA NA NA -SPARCL1--GREB1L BS_SAA624A4 -3.41772029198611 3.68661744722058 NA NA differentially expressed differentially expressed NA NA 4:87529151 18:21350201 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr4--chr18]],translocation SPARCL1 NA GREB1L NA TumorSuppressorGene NA NA NA NA -SPATA13--CYP1B1 BS_TGS109T3 1.99374957354366 -0.62763764040208 NA NA no change no change NA NA 13:24017701 2:38075389 ARRIBA other 2 0 high [INTERCHROMOSOMAL[chr13--chr2]],translocation SPATA13 NA CYP1B1 NA NA NA NA NA NA -SPATA6L--SPATA6L BS_G63HYD6N 1.19897288586086 1.19897288586086 NA NA no change no change NA NA 9:4600653 9:4629168 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing SPATA6L NA SPATA6L NA NA NA NA NA NA -SPATA6L--SPATA6L BS_NGHK9RZP 4.18815792870562 4.18815792870562 NA NA differentially expressed differentially expressed NA NA 9:4600653 9:4622510 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing SPATA6L NA SPATA6L NA NA NA NA NA NA -SPATA6L--SPATA6L BS_NRPG5K4K 0.082107192725697 0.082107192725697 NA NA no change no change NA NA 9:4600653 9:4629168 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing SPATA6L NA SPATA6L NA NA NA NA NA NA -SPATS2--SPATS2 BS_HCP5C912 0.157059603379386 0.157059603379386 NA NA no change no change NA NA 12:49500205 12:49484590 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.16Mb]],duplication/non-canonical_splicing SPATS2 NA SPATS2 NA NA NA NA NA NA -SPATS2L--KPNA3 BS_YEW22W35 -0.1909587635736 -4.77240059294082 NA NA no change differentially expressed NA NA 2:200419496 13:49786521 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr2--chr13]],translocation/5'-5' SPATS2L NA KPNA3 NA NA NA NA NA NA -SPATS2L--SLC25A12 BS_49FQXT2E 0.502265646822512 0.0336983471834196 NA NA no change no change NA NA 2:200389283 2:171893258 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr2:28.31Mb]],inversion SPATS2L NA SLC25A12 NA NA NA NA NA NA -SPDYA--AGAP1 BS_RRAEQZ97 -1.2584339212014 1.9669192374732 NA NA no change no change NA NA 2:28799281 2:235869789 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr2:206.64Mb]],inversion/3'-3' SPDYA NA AGAP1 NA NA NA NA NA NA -SPDYA--ALK BS_PQ6QEVE8 -1.06033774924285 9.94101182353293 NA NA no change differentially expressed NA NA 2:28788728 2:29223634 ARRIBA other 129 12 high [INTRACHROMOSOMAL[chr2:0.34Mb]],inversion SPDYA NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -SPDYA--ALK BS_PQ6QEVE8 -1.06033774924285 9.94101182353293 NA NA no change differentially expressed NA NA 2:28783978 2:29223528 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr2:0.34Mb]],inversion SPDYA NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -SPDYA--ALK BS_ZZWMD6FA -1.38853393296424 7.31193792330893 NA NA no change differentially expressed NA NA 2:28788728 2:29223634 ARRIBA other 108 16 high [INTRACHROMOSOMAL[chr2:0.34Mb]],inversion SPDYA NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -SPEF2--SPEF2 BS_3X9WMZGJ 2.94432406238605 2.94432406238605 NA NA differentially expressed differentially expressed NA NA 5:35763702 5:35739919 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.20Mb]],duplication/non-canonical_splicing SPEF2 NA SPEF2 NA NA NA NA NA NA -SPEF2--SPEF2 BS_EK5PCKY0 3.4777431595444 3.4777431595444 NA NA differentially expressed differentially expressed NA NA 5:35709121 5:35646667 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.20Mb]],duplication/non-canonical_splicing SPEF2 NA SPEF2 NA NA NA NA NA NA -SPEF2--SPEF2 BS_ZV68CES9 1.81473028903628 1.81473028903628 NA NA no change no change NA NA 5:35763702 5:35739919 ARRIBA in-frame 2 2 low [SELFIE,INTRACHROMOSOMAL[chr5:0.20Mb]],duplication/non-canonical_splicing SPEF2 NA SPEF2 NA NA NA NA NA NA -SPEG--SNORD2(505671)/MIR3924(202777) BS_P0QF87WC 1.17485429075605 NA NA NA no change NA NA NA 2:219477445 10:57101702 ARRIBA frameshift 3 0 high [],translocation SPEG NA SNORD2 MIR3924 Kinase, Kinase NA NA NA NA -SPEG--SNORD2(505671)/MIR3924(202777) BS_WAXJY4XQ -0.0205436969558636 NA NA NA no change NA NA NA 2:219477445 10:57101702 ARRIBA frameshift 4 0 high [],translocation SPEG NA SNORD2 MIR3924 Kinase, Kinase NA NA NA NA -SPEG--SNORD2(505671)/MIR3924(202777) BS_WJ9H4NZZ 0.373873119948355 NA NA NA no change NA NA NA 2:219477445 10:57101702 ARRIBA frameshift 3 0 high [],translocation SPEG NA SNORD2 MIR3924 Kinase, Kinase NA NA NA NA -SPG7--BBX BS_T1QMEH1N -1.64748190848966 1.84928576236343 NA NA no change no change NA NA 16:89536864 3:107805982 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr16--chr3]],translocation SPG7 NA BBX NA NA TranscriptionFactor NA NA NA -SPON1--AC018523.2 BS_4GTESTSE 1.58169778021947 NA NA NA no change NA NA NA 11:14243396 11:14519041 ARRIBA frameshift 13 2 high [INTRACHROMOSOMAL[chr11:0.23Mb]],inversion SPON1 NA AC018523.2 NA NA NA NA NA NA -SPON1--PSMA1 BS_4GTESTSE 1.58169778021947 -0.532403449862027 NA NA no change no change NA NA 11:14243396 11:14519041 ARRIBA frameshift 13 2 high [INTRACHROMOSOMAL[chr11:0.24Mb]],inversion SPON1 NA PSMA1 NA NA NA NA NA NA -SPOP--LINC02141(125895)/AC018554.2(177346) BS_KVNGNETA 1.59744919005265 NA NA NA no change NA NA NA 17:49607250 16:60179868 ARRIBA frameshift 9 1 high [],translocation SPOP NA LINC02141 AC018554.2 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -SPRED1--EIF2AK4 BS_6VPKXXMR 2.83272370422026 -1.10744835915515 NA NA differentially expressed no change NA NA 15:38324810 15:39977068 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:1.58Mb]],inversion/3'-3' SPRED1 NA EIF2AK4 NA NA Kinase NA NA NA -SPRED1--NPY1R BS_YBJBSRHV 1.7710318975767 -0.229766081371398 NA NA no change no change NA NA 15:38339895 4:163325747 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr15--chr4]],translocation/5'-5' SPRED1 NA NPY1R NA NA Oncogene NA NA NA -SPRED1--NPY5R BS_YBJBSRHV 1.7710318975767 1.68171866464967 NA NA no change no change NA NA 15:38339895 4:163345714 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr15--chr4]],translocation SPRED1 NA NPY5R NA NA NA NA NA NA -SPRED2--NYAP2 BS_RRAEQZ97 2.7309333216788 0.728243276003831 NA NA differentially expressed no change NA NA 2:65431962 2:225651432 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr2:159.97Mb]],inversion SPRED2 NA NYAP2 NA NA NA NA NA NA -SPRYD7(39385)/DLEU2(6677)--DLEU2 BS_9V633J1X -1.04929145743913 5.13815627274602 5.13815627274602 NA no change differentially expressed differentially expressed NA 13:49975875 13:50045232 ARRIBA other 1 0 low [],duplication SPRYD7 DLEU2 DLEU2 NA NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA -SPRYD7(39843)/DLEU2(6219)--DLEU2 BS_S1M423AB -1.34392645951909 4.96480445962813 4.96480445962813 NA no change differentially expressed differentially expressed NA 13:49976333 13:49997419 ARRIBA other 1 0 low [],duplication SPRYD7 DLEU2 DLEU2 NA NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA -SPTB--SPTB BS_KK5C8VCK 1.14277857917641 1.14277857917641 NA NA no change no change NA NA 14:64766726 14:64779931 ARRIBA in-frame 41 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing SPTB NA SPTB NA NA NA NA NA NA -SPTBN2--FYN BS_QRDT19KS 0.663314927897526 3.99548561021485 NA NA no change differentially expressed NA NA 11:66686994 6:111850848 ARRIBA frameshift 1 2 medium [INTERCHROMOSOMAL[chr11--chr6]],translocation SPTBN2 NA FYN NA NA Kinase, Oncogene, Kinase NA NA NA -SPTLC2--SLC25A4 BS_NB42PWZN 0.120931840512596 -3.15743618644926 NA NA no change differentially expressed NA NA 14:77557041 4:185143851 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr14--chr4]],translocation/5'-5' SPTLC2 NA SLC25A4 NA NA NA NA NA NA -SPTLC2--SLC25A4 BS_Z7890YNR 0.578866875651482 -3.61889007332568 NA NA no change differentially expressed NA NA 14:77556391 4:185144324 ARRIBA other 2 1 medium [INTERCHROMOSOMAL[chr14--chr4]],translocation/5'-5' SPTLC2 NA SLC25A4 NA NA NA NA NA NA -SPTLC2--YPEL1(2359)/MAPK1(16307) BS_ZVZDDW2G 1.54521928520328 -1.61999507337803 NA 1.87916108092814 no change no change NA no change 14:77552096 22:21738193 ARRIBA frameshift 2 0 medium [],translocation SPTLC2 NA YPEL1 MAPK1 NA NA NA CosmicCensus, Oncogene, Kinase NA -SPTLC3--SPTLC3 BS_MKM0EEN1 5.31773267087585 5.31773267087585 NA NA differentially expressed differentially expressed NA NA 20:13093577 20:13072256 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.16Mb]],duplication/non-canonical_splicing SPTLC3 NA SPTLC3 NA NA NA NA NA NA -SQLE--PVT1 BS_WMEHNDSK 5.76068331541943 7.60148413720297 NA NA differentially expressed differentially expressed NA NA 8:124999694 8:128096518 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr8:2.77Mb]],deletion SQLE NA PVT1 NA NA Oncogene NA NA NA -SQLE--TRIB1(14618)/AC091114.1(13916) BS_WMEHNDSK 5.76068331541943 10.1542563841137 NA NA differentially expressed differentially expressed NA NA 8:124999694 8:125453023 ARRIBA frameshift 5 1 medium [],deletion SQLE NA TRIB1 AC091114.1 NA Kinase NA NA NA -SRD5A1--LINC01643 BS_QWTE1CWR 3.90523546541887 NA NA NA differentially expressed NA NA NA 5:6656179 22:34114485 ARRIBA frameshift 11 4 high [INTERCHROMOSOMAL[chr5--chr22]],translocation/5'-5' SRD5A1 NA LINC01643 NA NA NA NA NA NA -SREBF1--TNKS BS_6WP1FHTE 0.751412414211757 4.10399892732552 NA NA no change differentially expressed NA NA 17:17836727 8:9720374 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr17--chr8]],translocation SREBF1 NA TNKS NA TranscriptionFactor NA NA NA NA -SRF--NOMO2 BS_6JHXXVR7 2.61660914997428 -2.09089727933912 NA NA differentially expressed differentially expressed NA NA 6:43178812 16:18559571 ARRIBA frameshift 5 1 medium [INTERCHROMOSOMAL[chr6--chr16]],translocation/5'-5' SRF NA NOMO2 NA TranscriptionFactor NA NA NA NA -SRF--NOMO2 BS_KE56MMY0 2.80395084373535 -1.32422541630436 NA NA differentially expressed no change NA NA 6:43178812 16:18559571 ARRIBA frameshift 3 1 medium [INTERCHROMOSOMAL[chr6--chr16]],translocation/5'-5' SRF NA NOMO2 NA TranscriptionFactor NA NA NA NA -SRF--RAB6A BS_PEP9NZXN 0.186931457963134 0.350725353087675 NA NA no change no change NA NA 6:43178418 11:73679720 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr6--chr11]],translocation/3'-3' SRF NA RAB6A NA TranscriptionFactor NA NA NA NA -SRGAP1--CDCP1 BS_MV6ASWV9 7.30439275245447 9.70204631166557 NA NA differentially expressed differentially expressed NA NA 12:63844883 3:45118621 ARRIBA in-frame 19 0 high [INTERCHROMOSOMAL[chr12--chr3]],translocation SRGAP1 NA CDCP1 NA NA TumorSuppressorGene NA NA NA -SRGAP1--CDCP1 BS_MV6ASWV9 7.30439275245447 9.70204631166557 NA NA differentially expressed differentially expressed NA NA 12:63844883 3:45112445 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr12--chr3]],translocation SRGAP1 NA CDCP1 NA NA TumorSuppressorGene NA NA NA -SRGAP2--KIF14 BS_QWTE1CWR 0.696588623419139 14.0965713532816 NA NA no change differentially expressed NA NA 1:206303473 1:200581294 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:5.58Mb]],inversion SRGAP2 NA KIF14 NA NA Oncogene NA NA NA -SRGAP2--KIF14 BS_WKESC3XN 1.65492666227548 19.1846435501321 NA NA no change differentially expressed NA NA 1:206303473 1:200581294 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:5.58Mb]],inversion SRGAP2 NA KIF14 NA NA Oncogene NA NA NA -SRGAP2B--ATP6V1G3(26591)/AL157402.1(30188) BS_WKESC3XN 2.518617256607 10.6738204852815 NA NA differentially expressed differentially expressed NA NA 1:144905974 1:198567536 ARRIBA frameshift 4 0 low [],duplication SRGAP2B NA ATP6V1G3 AL157402.1 NA NA NA NA NA -SRGAP2B--SRGAP2B BS_470DYRJQ 1.90885045033441 1.90885045033441 NA NA no change no change NA NA 1:144905091 1:144955601 ARRIBA frameshift 9 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SRGAP2B NA SRGAP2B NA NA NA NA NA NA -SRGAP2B--SRGAP2B BS_N6NE6B3W 2.27486213044973 2.27486213044973 NA NA differentially expressed differentially expressed NA NA 1:144905091 1:144955601 ARRIBA frameshift 26 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SRGAP2B NA SRGAP2B NA NA NA NA NA NA -SRGAP2B--SRGAP2B BS_QV51J756 2.14835407596737 2.14835407596737 NA NA differentially expressed differentially expressed NA NA 1:144905091 1:144955601 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SRGAP2B NA SRGAP2B NA NA NA NA NA NA -SRGAP3--RAF1 BS_CTR5X93B 1.09409651957874 0.103970964566882 NA NA no change no change NA NA 3:9032650 3:12600415 ARRIBA in-frame 4 1 high [Cosmic,ChimerSeq,ChimerKB,INTRACHROMOSOMAL[chr3:3.33Mb]],duplication SRGAP3 NA RAF1 NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -SRGAP3--TM4SF18 BS_FAQQ0GCQ 0.0767948885045081 0.634561158692046 NA NA no change no change NA NA 3:9248885 3:149333399 ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr3:140.07Mb]],duplication SRGAP3 NA TM4SF18 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -SRGAP3--TM4SF18 BS_FAQQ0GCQ 0.0767948885045081 0.634561158692046 NA NA no change no change NA NA 3:9248885 3:149333609 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr3:140.07Mb]],duplication SRGAP3 NA TM4SF18 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -SRP54--PRKCH BS_K17VQECG 1.40111523118676 0.661709339875937 NA NA no change no change NA NA 14:34999649 14:61255529 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr14:26.16Mb]],inversion/3'-3' SRP54 NA PRKCH NA NA Kinase NA NA NA -SRP68--PRPSAP1 BS_X23724NJ 1.37978826633059 0.909677556717351 NA NA no change no change NA NA 17:76067217 17:76313891 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr17:0.24Mb]],duplication SRP68 NA PRPSAP1 NA NA NA NA NA NA -SRPK1--KLHL28 BS_6JHXXVR7 1.97399996585718 4.17729519595844 NA NA no change differentially expressed NA NA 6:35920468 14:44945928 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr6--chr14]],translocation SRPK1 NA KLHL28 NA Kinase, Kinase NA NA NA NA -SRPK1--RNU6-679P(1787)/AC106771.1(254599) BS_6JHXXVR7 1.97399996585718 NA NA NA no change NA NA NA 6:35890895 5:12299291 ARRIBA frameshift 4 0 high [],translocation SRPK1 NA RNU6-679P AC106771.1 Kinase, Kinase NA NA NA NA -SRPK2--DPY19L2P2 BS_RB2S0KDF -0.508038256361888 3.37188034858987 NA NA no change differentially expressed NA NA 7:105268806 7:103278346 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr7:1.83Mb]],deletion SRPK2 NA DPY19L2P2 NA Kinase, Oncogene, Kinase NA NA NA NA -SRPK2--DPY19L2P2 BS_RB2S0KDF -0.508038256361888 3.37188034858987 NA NA no change differentially expressed NA NA 7:105268806 7:103257724 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:1.83Mb]],deletion SRPK2 NA DPY19L2P2 NA Kinase, Oncogene, Kinase NA NA NA NA -SRPK2--DPY19L2P2 BS_RB2S0KDF -0.508038256361888 3.37188034858987 NA NA no change differentially expressed NA NA 7:105268806 7:103277638 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:1.83Mb]],deletion SRPK2 NA DPY19L2P2 NA Kinase, Oncogene, Kinase NA NA NA NA -SRPK2--HYAL4 BS_RB2S0KDF -0.508038256361888 91.37447920452 NA NA no change differentially expressed NA NA 7:105388648 7:123868223 ARRIBA frameshift 16 1 high [INTRACHROMOSOMAL[chr7:18.43Mb]],inversion SRPK2 NA HYAL4 NA Kinase, Oncogene, Kinase NA NA NA NA -SRPK2--LHFPL3 BS_V3Z3DB4N 0.92186894897023 1.4927168058623 NA NA no change no change NA NA 7:105125782 7:104643242 ARRIBA frameshift 2 4 high [INTRACHROMOSOMAL[chr7:0.20Mb]],deletion/5'-5' SRPK2 NA LHFPL3 NA Kinase, Oncogene, Kinase NA NA NA NA -SRPRA--AP002444.1 BS_QWTE1CWR NA NA NA NA NA NA NA NA 11:126264096 11:109776703 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr11:16.44Mb]],deletion SRPRA NA AP002444.1 NA NA NA NA NA NA -SRPRA--AP003102.1(106895)/AP002444.1(6419) BS_QWTE1CWR NA NA NA NA NA NA NA NA 11:126264096 11:109745023 ARRIBA frameshift 2 1 medium [],deletion SRPRA NA AP003102.1 AP002444.1 NA NA NA NA NA -SRPRA--CACNA2D1 BS_A14Z8BBK NA 7.69733244103909 NA NA NA differentially expressed NA NA 11:126264096 7:81974552 ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr11--chr7]],translocation SRPRA NA CACNA2D1 NA NA NA NA NA NA -SSBP1--TPK1 BS_JKXA3FQC -0.714183306942491 1.67436416504261 NA NA no change no change NA NA 7:141750384 7:144453663 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr7:2.66Mb]],inversion SSBP1 NA TPK1 NA NA Oncogene NA NA NA -SSBP2--AC010266.2(826)/AC010266.1(6926) BS_B1C6GZ84 -1.19351412088648 NA NA NA no change NA NA NA 5:81750981 5:6023109 ARRIBA frameshift 3 0 medium [],deletion SSBP2 NA AC010266.2 AC010266.1 TumorSuppressorGene NA NA NA NA -SSPO--DDR1 BS_40MP5BWR 3.09700592392193 4.30450855136475 NA NA differentially expressed differentially expressed NA NA 7:149806831 6:30897016 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr7--chr6]],translocation SSPO NA DDR1 NA NA Kinase, Oncogene, Kinase NA NA NA -SSR1--MAP1LC3A BS_Y3G1X98S 4.37287721340527 -1.54102291220882 NA NA differentially expressed no change NA NA 6:7303550 20:34559208 ARRIBA in-frame 20 3 high [INTERCHROMOSOMAL[chr6--chr20]],translocation SSR1 NA MAP1LC3A NA NA NA NA NA NA -SSSCA1--C11orf95 BS_FTKPQ5FZ -0.91458865861568 6.18489671018741 NA NA no change differentially expressed NA NA 11:65572748 11:63764531 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr11:1.80Mb]],inversion SSSCA1 NA C11orf95 NA NA NA NA NA NA -SSUH2--OXTR BS_ZR96A4FH -0.692608642377132 1.04813359732887 NA NA no change no change NA NA 3:8703026 3:8768591 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr3:0.01Mb],LOCAL_REARRANGEMENT:-:[5368]],duplication SSUH2 NA OXTR NA NA NA NA NA NA -SSUH2--OXTR BS_ZR96A4FH -0.692608642377132 1.04813359732887 NA NA no change no change NA NA 3:8742459 3:8768591 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:0.01Mb],LOCAL_REARRANGEMENT:-:[5368]],duplication SSUH2 NA OXTR NA NA NA NA NA NA -ST13--ROS1 BS_3W07B2TG -0.553796544883674 5.82777268752117 NA NA no change differentially expressed NA NA 22:40829626 6:117321394 ARRIBA in-frame 10 1 high [INTERCHROMOSOMAL[chr22--chr6]],translocation ST13 NA ROS1 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA -ST18--ST18 BS_09Z7TC35 1.84297465836006 1.84297465836006 NA NA no change no change NA NA 8:52212079 8:52230077 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_2SFTWNVE 2.7828276406102 2.7828276406102 NA NA differentially expressed differentially expressed NA NA 8:52142930 8:52166986 ARRIBA frameshift 19 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_3MS8WVNR 0.580638722505059 0.580638722505059 NA NA no change no change NA NA 8:52212079 8:52230077 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_3MYEMXPQ 3.59320168161708 3.59320168161708 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_3NWQXPQV 3.36558632718554 3.36558632718554 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 15 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_470DYRJQ 1.10359632694947 1.10359632694947 NA NA no change no change NA NA 8:52142930 8:52166986 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_4D9DD103 0.381753534041345 0.381753534041345 NA NA no change no change NA NA 8:52142930 8:52172583 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_4PH1MBGR 3.33023240523719 3.33023240523719 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 37 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_5PEFNDCY 0.179100984282432 0.179100984282432 NA NA no change no change NA NA 8:52142930 8:52166986 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_5PJCHF6V 3.54792712563537 3.54792712563537 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 25 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_7FWZ518S 2.66546261417082 2.66546261417082 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_8S86CM61 3.59396274315551 3.59396274315551 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 33 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_9M5XJ10G 1.72247097971399 1.72247097971399 NA NA no change no change NA NA 8:52212079 8:52230077 ARRIBA frameshift 10 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_BSV07M7Z 3.7062685411604 3.7062685411604 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 39 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_DFWFBYSN 3.49802335446178 3.49802335446178 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 19 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_EFE4YEK3 3.05591539223612 3.05591539223612 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 17 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_ERWT0ZWE 2.97804658776938 2.97804658776938 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 15 5 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_ET8CJXSF 0.531474236931646 0.531474236931646 NA NA no change no change NA NA 8:52142930 8:52166986 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_FEPRNEXX 2.17175517797261 2.17175517797261 NA NA differentially expressed differentially expressed NA NA 8:52142930 8:52166986 ARRIBA frameshift 16 3 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_G23JJAZY 0.686012023031182 0.686012023031182 NA NA no change no change NA NA 8:52212079 8:52230077 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_H8A9PSYA -0.161033904721446 -0.161033904721446 NA NA no change no change NA NA 8:52142930 8:52166986 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_HF3RNN2T 3.64311054924169 3.64311054924169 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 20 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_HHPA8NJ2 1.81901003743557 1.81901003743557 NA NA no change no change NA NA 8:52212079 8:52230077 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_J8G4SH4Z 3.62186120089765 3.62186120089765 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 34 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_N6NE6B3W 2.28259622466794 2.28259622466794 NA NA differentially expressed differentially expressed NA NA 8:52142930 8:52166986 ARRIBA frameshift 38 6 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_NKRYMHEP 3.04935679870791 3.04935679870791 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 27 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_NZ71XCG3 3.25982343074217 3.25982343074217 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 32 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_PZVHMSYN -0.0503482869113309 -0.0503482869113309 NA NA no change no change NA NA 8:52116275 8:52172583 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_QEYPFYHD 2.56902035103332 2.56902035103332 NA NA differentially expressed differentially expressed NA NA 8:52116275 8:52172583 ARRIBA frameshift 27 6 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_QPPPGYP4 2.98848253027166 2.98848253027166 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 24 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_QTSXW7DA 0.0814788087177379 0.0814788087177379 NA NA no change no change NA NA 8:52212079 8:52221793 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_QWNBZ9RJ 1.80113658972867 1.80113658972867 NA NA no change no change NA NA 8:52212079 8:52230077 ARRIBA frameshift 27 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_RCC8BXVE 2.38810125126492 2.38810125126492 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_RD4D5F9F 2.40846455858466 2.40846455858466 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_S1M423AB 2.99425452312708 2.99425452312708 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 15 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_SFKZSJN1 1.47659314458645 1.47659314458645 NA NA no change no change NA NA 8:52142930 8:52172583 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_TMTV769C 1.13203680009561 1.13203680009561 NA NA no change no change NA NA 8:52116275 8:52172583 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_VMMJYN8Z -0.86338484742586 -0.86338484742586 NA NA no change no change NA NA 8:52142930 8:52166986 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_W18SF91A 1.93643216635544 1.93643216635544 NA NA no change no change NA NA 8:52212079 8:52230077 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_Y8D1F5WW 3.32847731548142 3.32847731548142 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 24 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_ZV68CES9 2.98087596989946 2.98087596989946 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 29 5 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST18--ST18 BS_ZXYDSBM9 2.56181075138733 2.56181075138733 NA NA differentially expressed differentially expressed NA NA 8:52212079 8:52230077 ARRIBA frameshift 19 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA -ST3GAL1--PVT1 BS_WMEHNDSK 2.46678333818533 7.60148413720297 NA NA differentially expressed differentially expressed NA NA 8:133571693 8:127890589 ARRIBA other 22 3 medium [INTRACHROMOSOMAL[chr8:5.35Mb]],inversion ST3GAL1 NA PVT1 NA NA Oncogene NA NA NA -ST3GAL1--PVT1 BS_WMEHNDSK 2.46678333818533 7.60148413720297 NA NA differentially expressed differentially expressed NA NA 8:133570110 8:127890589 ARRIBA other 1 4 medium [INTRACHROMOSOMAL[chr8:5.35Mb]],inversion ST3GAL1 NA PVT1 NA NA Oncogene NA NA NA -ST3GAL1--TG BS_XG0DBWVT 9.61406858291832 3.05732959709083 NA NA differentially expressed differentially expressed NA NA 8:133545774 8:133095044 ARRIBA other 10 1 high [FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.32Mb]],inversion ST3GAL1 NA TG NA NA NA NA NA NA -ST3GAL1--TG BS_XG0DBWVT 9.61406858291832 3.05732959709083 NA NA differentially expressed differentially expressed NA NA 8:133571693 8:133095044 ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.32Mb]],inversion ST3GAL1 NA TG NA NA NA NA NA NA -ST3GAL3--USP49 BS_RCCN63K6 0.103912717302585 1.04840377431538 NA NA no change no change NA NA 1:43736380 6:41872318 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr1--chr6]],translocation/5'-5' ST3GAL3 NA USP49 NA NA NA NA NA NA -ST3GAL5--REEP1 BS_1D6PZNKN -0.218038433147091 -0.996154287035489 NA NA no change no change NA NA 2:85846377 2:86221890 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr2:0.31Mb]],inversion/5'-5' ST3GAL5 NA REEP1 NA NA NA NA NA NA -ST5--MUC5AC BS_KE56MMY0 2.17830576278101 21.6617035666719 NA NA differentially expressed differentially expressed NA NA 11:8726073 11:1160612 ARRIBA in-frame 11 0 high [INTRACHROMOSOMAL[chr11:7.49Mb]],inversion ST5 NA MUC5AC NA TumorSuppressorGene, Oncogene Oncogene NA NA NA -ST5--PAMR1 BS_49FQXT2E 2.55852412548925 0.342578840207858 NA NA differentially expressed no change NA NA 11:8810517 11:35494272 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr11:26.52Mb]],duplication ST5 NA PAMR1 NA TumorSuppressorGene, Oncogene NA NA NA NA -ST6GAL1--ROPN1 BS_Y3G1X98S 3.36533063177152 5.34653614518006 NA NA differentially expressed differentially expressed NA NA 3:187051346 3:123980493 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr3:62.94Mb]],inversion ST6GAL1 NA ROPN1 NA Oncogene NA NA NA NA -ST7--AC007036.1(55232)/ZNRF2(50061) BS_6WP1FHTE 4.29495750012328 NA NA 4.72007251750714 differentially expressed NA NA differentially expressed 7:117130606 7:30234246 ARRIBA frameshift 196 16 high [],inversion ST7 NA AC007036.1 ZNRF2 TumorSuppressorGene NA NA NA NA -ST7--AC007036.1(55232)/ZNRF2(50061) BS_E60JZ9Z3 1.27512981189533 NA NA 4.75743061043688 no change NA NA differentially expressed 7:117130606 7:30234246 ARRIBA frameshift 20 6 high [],inversion ST7 NA AC007036.1 ZNRF2 TumorSuppressorGene NA NA NA NA -ST7--CAV2 BS_4QW2S1Q8 0.258298366538482 0.525544667271661 NA NA no change no change NA NA 7:116953691 7:116427322 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:0.44Mb]],duplication ST7 NA CAV2 NA TumorSuppressorGene NA NA NA NA -ST7--CPED1 BS_6DCSD5Y6 4.80906422685076 7.42232534093731 NA NA differentially expressed differentially expressed NA NA 7:117020629 7:121226427 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:3.76Mb]],inversion/3'-3' ST7 NA CPED1 NA TumorSuppressorGene NA NA NA NA -ST7--CTTNBP2 BS_6DCSD5Y6 4.80906422685076 6.06964331817141 NA NA differentially expressed differentially expressed NA NA 7:117020629 7:117784454 ARRIBA in-frame 7 0 high [CCLE,INTRACHROMOSOMAL[chr7:0.48Mb]],inversion ST7 NA CTTNBP2 NA TumorSuppressorGene NA NA NA NA -ST7--PDE1C BS_T1YHK6B7 1.31619490618878 0.990003083021962 NA NA no change no change NA NA 7:116953691 7:31828373 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr7:84.65Mb]],inversion ST7 NA PDE1C NA TumorSuppressorGene NA NA NA NA -ST7--PDE1C BS_T1YHK6B7 1.31619490618878 0.990003083021962 NA NA no change no change NA NA 7:117020629 7:31828373 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:84.65Mb]],inversion ST7 NA PDE1C NA TumorSuppressorGene NA NA NA NA -ST7--TNPO3 BS_4QW2S1Q8 0.258298366538482 1.74522639139356 NA NA no change no change NA NA 7:117119720 7:128997535 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:11.72Mb]],inversion ST7 NA TNPO3 NA TumorSuppressorGene NA NA NA NA -ST7-AS2--CADPS2 BS_T1YHK6B7 -0.0598042091161661 -0.495071443593588 NA NA no change no change NA NA 7:117080865 7:122554689 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr7:5.17Mb]],duplication ST7-AS2 NA CADPS2 NA NA Oncogene NA NA NA -ST8SIA1--ST8SIA1 BS_NDFDQBCZ 1.60825221669373 1.60825221669373 NA NA no change no change NA NA 12:22354179 12:22392396 ARRIBA other 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.37Mb]],duplication ST8SIA1 NA ST8SIA1 NA NA NA NA NA NA -STAG1--CLRN1-AS1 BS_7GJT4A6A 3.40401056848453 12.7015690920632 NA NA differentially expressed differentially expressed NA NA 3:136417885 3:150870394 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr3:14.33Mb]],inversion STAG1 NA CLRN1-AS1 NA CosmicCensus, Oncogene NA NA NA NA -STAG1--SERF1AP1(93004)/STMN1P2(31235) BS_S6S7SK3P 3.38288372100489 NA NA -0.0581769584730617 differentially expressed NA NA no change 3:136417885 4:137394191 ARRIBA frameshift 1 0 low [],translocation STAG1 NA SERF1AP1 STMN1P2 CosmicCensus, Oncogene NA NA NA NA -STAG2--AC092266.1(8838)/LSINCT5(441730) BS_B9V8RGTA -2.84820658624502 NA NA -0.462522614002291 differentially expressed NA NA no change X:123960866 5:2270861 ARRIBA other 12 1 high [],translocation STAG2 NA AC092266.1 LSINCT5 CosmicCensus, Oncogene NA NA NA NA -STAG2--OPHN1 BS_PN2CE34A 3.92775502399476 1.26796551412057 NA NA differentially expressed no change NA NA X:124063205 X:68239197 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chrX:55.53Mb]],duplication/5'-5' STAG2 NA OPHN1 NA CosmicCensus, Oncogene NA NA NA NA -STAG2--SATB2 BS_MA1A3GY0 0.753473510238843 4.85522662151378 NA NA no change differentially expressed NA NA X:124063935 2:199460532 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chrX--chr2]],translocation/3'-3' STAG2 NA SATB2 NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA -STAG3L5P-PVRIG2P-PILRB--AKAP9 BS_H4B5Y6S0 -1.25685077478825 3.26596172153844 NA NA no change differentially expressed NA NA 7:100354012 7:92031512 ARRIBA other 2 2 high [INTRACHROMOSOMAL[chr7:8.23Mb]],duplication STAG3L5P-PVRIG2P-PILRB NA AKAP9 NA NA CosmicCensus, Oncogene NA NA NA -STAG3L5P-PVRIG2P-PILRB--AKAP9 BS_H4B5Y6S0 -1.25685077478825 3.26596172153844 NA NA no change differentially expressed NA NA 7:100353270 7:92029924 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr7:8.23Mb]],duplication STAG3L5P-PVRIG2P-PILRB NA AKAP9 NA NA CosmicCensus, Oncogene NA NA NA -STARD9--HAUS2 BS_5PJCHF6V 0.632904927844441 1.33811403714704 NA NA no change no change NA NA 15:42585637 15:42558198 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:+:[5665]],duplication STARD9 NA HAUS2 NA NA NA NA NA NA -STARD9--HAUS2 BS_5PJCHF6V 0.632904927844441 1.33811403714704 NA NA no change no change NA NA 15:42585637 15:42559339 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:+:[5665]],duplication STARD9 NA HAUS2 NA NA NA NA NA NA -STAT3--CCDC57 BS_FKDQJJB5 2.6831715413045 1.19223482745806 NA NA differentially expressed no change NA NA 17:42345559 17:82108954 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:39.71Mb]],duplication STAT3 NA CCDC57 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -STAT3--CCDC57 BS_FKDQJJB5 2.6831715413045 1.19223482745806 NA NA differentially expressed no change NA NA 17:42345559 17:82101866 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:39.71Mb]],duplication STAT3 NA CCDC57 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -STAT3--CD36 BS_FKDQJJB5 2.6831715413045 0.623530638012332 NA NA differentially expressed no change NA NA 17:42345559 7:80646088 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr17--chr7]],translocation STAT3 NA CD36 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -STAT4--AC079777.1(11890)/HMGB1P27(6273) BS_TGW6HC4X 0.310815720807434 NA NA -0.205157753308558 no change NA NA no change 2:191076227 2:191167960 ARRIBA frameshift 1 0 low [],duplication STAT4 NA AC079777.1 HMGB1P27 TranscriptionFactor NA NA NA NA -STAU2--AC138647.1(240979)/MIR1302-7(26526) BS_479S95Q6 0.0546173383395092 -0.852899494425881 NA NA no change no change NA NA 8:73422614 8:141759716 ARRIBA frameshift 5 0 high [],inversion STAU2 NA AC138647.1 MIR1302-7 NA NA NA NA NA -STAU2--AP001330.2(6002)/AP001330.1(18540) BS_HZRM07TW 0.0168573892108507 NA NA NA no change NA NA NA 8:73738284 8:101268905 ARRIBA frameshift 2 0 high [],duplication STAU2 NA AP001330.2 AP001330.1 NA NA NA NA NA -STAU2--AP001330.3(15717)/AP001330.2(21251) BS_HZRM07TW 0.0168573892108507 NA NA NA no change NA NA NA 8:73738284 8:101240290 ARRIBA frameshift 3 0 medium [],duplication STAU2 NA AP001330.3 AP001330.2 NA NA NA NA NA -STAU2--STAU2 BS_W644VEVE 0.592752864864286 0.592752864864286 NA NA no change no change NA NA 8:73603726 8:73519134 ARRIBA frameshift 26 1 high [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.33Mb]],inversion/5'-5' STAU2 NA STAU2 NA NA NA NA NA NA -STC2--MCHR1 BS_1A6MQ9ZA 7.66281356058567 2.93062060518743 NA NA differentially expressed differentially expressed NA NA 5:173323219 22:40680777 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr5--chr22]],translocation/5'-5' STC2 NA MCHR1 NA NA NA NA NA NA -STC2--MKL1(24263)/GAPDHP37(12519) BS_1A6MQ9ZA 7.66281356058567 0.847046130845051 NA 19.6277698690013 differentially expressed no change NA differentially expressed 5:173323219 22:40660965 ARRIBA frameshift 3 0 high [],translocation STC2 NA MKL1 GAPDHP37 NA Oncogene NA NA NA -STIM1--AC025475.1 BS_6JHXXVR7 0.734851650934685 NA NA NA no change NA NA NA 11:4023987 5:26389683 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr11--chr5]],translocation STIM1 NA AC025475.1 NA NA NA NA NA NA -STIM1--ANKS3 BS_6JHXXVR7 0.734851650934685 -0.832639991472296 NA NA no change no change NA NA 11:4023987 16:4714186 ARRIBA frameshift 4 1 high [HGNC_GENEFAM,INTERCHROMOSOMAL[chr11--chr16]],translocation STIM1 NA ANKS3 NA NA NA NA NA NA -STIM1--DLG1 BS_MN5XVP5A 1.24640725640014 0.329412945509222 NA NA no change no change NA NA 11:3967682 3:197149796 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr11--chr3]],translocation STIM1 NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA -STIM1--DLG1 BS_MN5XVP5A 1.24640725640014 0.329412945509222 NA NA no change no change NA NA 11:3967682 3:197142768 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr11--chr3]],translocation STIM1 NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA -STIM1--DLG1 BS_RCCN63K6 0.754992738946413 0.26240347895349 NA NA no change no change NA NA 11:3967682 3:197142768 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr11--chr3]],translocation STIM1 NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA -STIM1--DLG1 BS_RCCN63K6 0.754992738946413 0.26240347895349 NA NA no change no change NA NA 11:3967682 3:197149796 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr11--chr3]],translocation STIM1 NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA -STIM1--DLG1 BS_RCCN63K6 0.754992738946413 0.26240347895349 NA NA no change no change NA NA 11:3967682 3:197161738 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr11--chr3]],translocation STIM1 NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA -STIM2--AL136537.1(103159)/MIR4801(13327) BS_W3R88RFP 1.30438510224854 NA NA NA no change NA NA NA 4:26919634 4:37228583 ARRIBA frameshift 3 0 high [],deletion STIM2 NA AL136537.1 MIR4801 NA NA NA NA NA -STIM2--NWD2 BS_W3R88RFP 1.30438510224854 1.16541919601218 NA NA no change no change NA NA 4:26919634 4:37325936 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr4:10.22Mb]],deletion STIM2 NA NWD2 NA NA NA NA NA NA -STIM2--SMPD3 BS_MM20BVW9 0.981141640646728 0.677878157327937 NA NA no change no change NA NA 4:26957726 16:68372387 ARRIBA frameshift 40 6 high [INTERCHROMOSOMAL[chr4--chr16]],translocation STIM2 NA SMPD3 NA NA NA NA NA NA -STIM2--TBC1D19(8952)/STIM2(93375) BS_4T0HPZDC -0.628890149097732 1.04364936060606 NA -0.628890149097732 no change no change NA no change 4:26957726 4:26764303 ARRIBA frameshift 1 1 high [],duplication STIM2 NA TBC1D19 STIM2 NA NA NA NA NA -STIP1--MACROD1 BS_6JHXXVR7 -0.434249928373783 -0.0670830168640184 NA NA no change no change NA NA 11:64186270 11:64152393 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr11:0.02Mb],LOCAL_INVERSION:+:-:[19166]],inversion STIP1 NA MACROD1 NA NA Oncogene NA NA NA -STIP1--MORF4L2 BS_QXKRN6CR -0.306523787537519 1.86256065447287 NA NA no change no change NA NA 11:64186270 X:103685260 ARRIBA frameshift 66 0 high [INTERCHROMOSOMAL[chr11--chrX]],translocation STIP1 NA MORF4L2 NA NA NA NA NA NA -STK24--RPS10P21(145269)/SNORD37(394455) BS_VVFBW0YH 0.824229292010384 99.935154074055 NA NA no change differentially expressed NA NA 13:98576745 13:72059447 ARRIBA frameshift 3 0 medium [],inversion STK24 NA RPS10P21 SNORD37 Kinase NA NA NA NA -STK3--VPS13B BS_1EBQ3T20 2.89523723353647 3.95419332988417 NA NA differentially expressed differentially expressed NA NA 8:98437103 8:99013760 ARRIBA other 1 1 medium [CCLE,FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.07Mb],LOCAL_INVERSION:-:+:[70439]],inversion STK3 NA VPS13B NA Kinase NA NA NA NA -STK31--STK31 BS_XJTW0P8P 3.74252170661443 3.74252170661443 NA NA differentially expressed differentially expressed NA NA 7:23781520 7:23752717 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.12Mb]],duplication/non-canonical_splicing STK31 NA STK31 NA Kinase Kinase NA NA NA -STK32B--IFITM9P BS_WKESC3XN 4.54515871028097 35.0114871163029 NA NA differentially expressed differentially expressed NA NA 4:5168450 11:69303766 ARRIBA frameshift 5 2 high [INTERCHROMOSOMAL[chr4--chr11]],translocation STK32B NA IFITM9P NA Kinase NA NA NA NA -STS--AC120338.1(312102)/VCX(38961) BS_E3BAT4C1 -0.780091283073053 NA NA -0.91724379497786 no change NA NA no change X:7334107 X:7803301 ARRIBA frameshift 1 1 high [],deletion STS NA AC120338.1 VCX NA NA NA NA NA -STX17(5378)/ERP44(3460)--STX17 BS_1EBQ3T20 4.43229331018282 4.43229331018282 3.66061210473794 NA differentially expressed differentially expressed differentially expressed NA 9:99975719 9:99915178 ARRIBA other 10 0 high [],duplication STX17 ERP44 STX17 NA NA NA NA NA NA -STX18--RNU7-152P(216348)/MIR1202(75423) BS_VJ2S5DVS -0.79458684912894 NA NA NA no change NA NA NA 4:4541797 6:155871374 ARRIBA frameshift 2 0 medium [],translocation STX18 NA RNU7-152P MIR1202 NA NA NA NA NA -STX5--HTATIP2 BS_KBT7MQ6H -0.218793851331368 0.147362949342611 NA NA no change no change NA NA 11:62824166 11:20364237 ARRIBA in-frame 7 0 high [INTRACHROMOSOMAL[chr11:42.42Mb]],inversion STX5 NA HTATIP2 NA NA TumorSuppressorGene, Oncogene NA NA NA -STX5--HTATIP2 BS_KBT7MQ6H -0.218793851331368 0.147362949342611 NA NA no change no change NA NA 11:62824166 11:20367174 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:42.42Mb]],inversion STX5 NA HTATIP2 NA NA TumorSuppressorGene, Oncogene NA NA NA -STX5--PINCR(50783)/IMPDH1P4(744) BS_NGHK9RZP -1.11897325874377 NA NA 7.27143284555267 no change NA NA differentially expressed 11:62831019 X:43277381 ARRIBA frameshift 6 0 high [],translocation STX5 NA PINCR IMPDH1P4 NA NA NA NA NA -STX8--AC127024.1 BS_TW8DQH8J -0.652951008533623 NA NA NA no change NA NA NA 17:9545172 17:30831352 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr17:21.25Mb]],duplication/5'-5' STX8 NA AC127024.1 NA NA NA NA NA NA -STX8--CRLF3 BS_FCAKKZ20 -0.825681646134818 2.68074607519631 NA NA no change differentially expressed NA NA 17:9545172 17:30804108 ARRIBA frameshift 12 0 high [INTRACHROMOSOMAL[chr17:21.19Mb]],duplication STX8 NA CRLF3 NA NA NA NA NA NA -STX8--CRLF3 BS_FCAKKZ20 -0.825681646134818 2.68074607519631 NA NA no change differentially expressed NA NA 17:9545172 17:30797398 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:21.19Mb]],duplication STX8 NA CRLF3 NA NA NA NA NA NA -STX8--CRLF3 BS_TW8DQH8J -0.652951008533623 2.65720728256629 NA NA no change differentially expressed NA NA 17:9545172 17:30804108 ARRIBA frameshift 10 4 high [INTRACHROMOSOMAL[chr17:21.19Mb]],duplication STX8 NA CRLF3 NA NA NA NA NA NA -STX8--CRLF3 BS_TW8DQH8J -0.652951008533623 2.65720728256629 NA NA no change differentially expressed NA NA 17:9545172 17:30797398 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr17:21.19Mb]],duplication STX8 NA CRLF3 NA NA NA NA NA NA -STX8--PRPF8 BS_WKESC3XN -1.33572155810696 0.143946483638083 NA NA no change no change NA NA 17:9378552 17:1662153 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr17:7.57Mb]],deletion STX8 NA PRPF8 NA NA NA NA NA NA -STX8--SYN3 BS_A3QZB9Y2 -1.50444845607445 -2.10281333981823 NA NA no change differentially expressed NA NA 17:9378552 22:32586484 ARRIBA frameshift 2 2 high [INTERCHROMOSOMAL[chr17--chr22]],translocation/5'-5' STX8 NA SYN3 NA NA NA NA NA NA -STXBP1--RREB1 BS_ZN8136D9 -1.46187105209397 8.36121357315506 NA NA no change differentially expressed NA NA 9:127661207 6:7248975 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr9--chr6]],translocation STXBP1 NA RREB1 NA NA Oncogene, TranscriptionFactor NA NA NA -STXBP5-AS1--STXBP5-AS1 BS_92VDQ0NE -0.362274801620874 -0.362274801620874 NA NA no change no change NA NA 6:146911552 6:147119477 ARRIBA other 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.36Mb]],duplication/non-canonical_splicing STXBP5-AS1 NA STXBP5-AS1 NA NA NA NA NA NA -STXBP5-AS1--STXBP5-AS1 BS_HCP5C912 -0.081527671518157 -0.081527671518157 NA NA no change no change NA NA 6:147052586 6:147119477 ARRIBA other 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.36Mb]],duplication STXBP5-AS1 NA STXBP5-AS1 NA NA NA NA NA NA -STXBP5-AS1--STXBP5-AS1 BS_WCRKYV0T 0.776554496073658 0.776554496073658 NA NA no change no change NA NA 6:147052586 6:147119477 ARRIBA other 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.36Mb]],duplication STXBP5-AS1 NA STXBP5-AS1 NA NA NA NA NA NA -STXBP5L--STXBP5L BS_39CGACC7 -0.123841002136817 -0.123841002136817 NA NA no change no change NA NA 3:121318540 3:121279805 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.52Mb]],duplication/non-canonical_splicing STXBP5L NA STXBP5L NA NA NA NA NA NA -STXBP5L--STXBP5L BS_6MY8W3H0 1.24828167056655 1.24828167056655 NA NA no change no change NA NA 3:121318540 3:121279805 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.52Mb]],duplication/non-canonical_splicing STXBP5L NA STXBP5L NA NA NA NA NA NA -STXBP5L--STXBP5L BS_PJPGVD62 0.385162005241612 0.385162005241612 NA NA no change no change NA NA 3:121157627 3:120954940 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.52Mb]],duplication/non-canonical_splicing STXBP5L NA STXBP5L NA NA NA NA NA NA -STXBP5L--STXBP5L BS_VNE0ZPBS 0.827417158367317 0.827417158367317 NA NA no change no change NA NA 3:121318540 3:121279805 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.52Mb]],duplication/non-canonical_splicing STXBP5L NA STXBP5L NA NA NA NA NA NA -STXBP5L--STXBP5L BS_YMAJC22S 1.00104424574218 1.00104424574218 NA NA no change no change NA NA 3:121318540 3:121279805 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.52Mb]],duplication/non-canonical_splicing STXBP5L NA STXBP5L NA NA NA NA NA NA -SUCO--LRIG2(31200)/AL357055.1(5534) BS_S6S7SK3P 4.89260402171597 4.7877876180444 NA NA differentially expressed differentially expressed NA NA 1:172570730 1:113163460 ARRIBA frameshift 2 1 high [],inversion SUCO NA LRIG2 AL357055.1 NA NA NA NA NA -SUGT1--MTCO2P3(39082)/SLC25A5P4(70858) BS_TXZ7KHTQ 1.48051711292326 -0.0854062223164541 NA -0.0766664869444487 no change no change NA no change 13:52692061 13:57243881 ARRIBA other 18 0 medium [],deletion SUGT1 NA MTCO2P3 SLC25A5P4 NA NA NA NA NA -SULF1--AC021785.1(128473)/LINC01603(118373) BS_64HCD9K3 10.5130009836542 NA NA 0.0542476561883692 differentially expressed NA NA no change 8:69501968 8:69306662 ARRIBA other 4 0 medium [],duplication SULF1 NA AC021785.1 LINC01603 NA NA NA NA NA -SULF2--ZHX3 BS_RCCN63K6 1.73633772418732 3.0231953821181 NA NA no change differentially expressed NA NA 20:47757189 20:41205066 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr20:6.34Mb]],deletion SULF2 NA ZHX3 NA Oncogene TranscriptionFactor NA NA NA -SULF2--ZHX3 BS_RCCN63K6 1.73633772418732 3.0231953821181 NA NA no change differentially expressed NA NA 20:47757189 20:41238796 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr20:6.34Mb]],deletion SULF2 NA ZHX3 NA Oncogene TranscriptionFactor NA NA NA -SULF2--ZHX3 BS_RCCN63K6 1.73633772418732 3.0231953821181 NA NA no change differentially expressed NA NA 20:47757189 20:41185201 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr20:6.34Mb]],deletion SULF2 NA ZHX3 NA Oncogene TranscriptionFactor NA NA NA -SUMF1--BFSP2 BS_FAQQ0GCQ 3.73498620133292 26.8336913033686 NA NA differentially expressed differentially expressed NA NA 3:4410865 3:133466828 ARRIBA in-frame 49 2 high [INTRACHROMOSOMAL[chr3:128.93Mb]],inversion SUMF1 NA BFSP2 NA NA Oncogene NA NA NA -SUPT16H--RPGRIP1 BS_6T4JGBGY 0.142255246312682 33.5759449596155 NA NA no change differentially expressed NA NA 14:21360677 14:21311824 ARRIBA other 7 5 high [INTRACHROMOSOMAL[chr14:0.00Mb],LOCAL_INVERSION:-:+:[171]],duplication/3'-3' SUPT16H NA RPGRIP1 NA NA NA NA NA NA -SUPT16H--RPGRIP1 BS_KVNGNETA 0.857797771711695 22.8662704664489 NA NA no change differentially expressed NA NA 14:21360677 14:21324618 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr14:0.00Mb],LOCAL_INVERSION:-:+:[171]],duplication/3'-3' SUPT16H NA RPGRIP1 NA NA NA NA NA NA -SUPT16H--RPGRIP1 BS_V9HVBBDW 0.797603024097533 28.8600113475551 NA NA no change differentially expressed NA NA 14:21360677 14:21324618 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.00Mb],LOCAL_INVERSION:-:+:[171]],duplication/3'-3' SUPT16H NA RPGRIP1 NA NA NA NA NA NA -SUPT5H--AC078880.2 BS_HZRM07TW -2.11162498500244 NA NA NA differentially expressed NA NA NA 19:39471730 12:115363011 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr19--chr12]],translocation SUPT5H NA AC078880.2 NA NA NA NA NA NA -SUPT5H--AC078880.5(12011)/AC078880.2(18435) BS_HZRM07TW -2.11162498500244 NA NA NA differentially expressed NA NA NA 19:39471730 12:115344577 ARRIBA frameshift 22 2 high [],translocation SUPT5H NA AC078880.5 AC078880.2 NA NA NA NA NA -SUPT5H--AC078880.5(27560)/AC078880.2(2886) BS_HZRM07TW -2.11162498500244 NA NA NA differentially expressed NA NA NA 19:39471730 12:115360126 ARRIBA frameshift 2 0 medium [],translocation SUPT5H NA AC078880.5 AC078880.2 NA NA NA NA NA -SUPT5H--AC243967.2(240)/CEACAM3(9304) BS_T1YHK6B7 -0.285768338769 NA NA 0.224326385029165 no change NA NA no change 19:39459249 19:41787133 ARRIBA frameshift 5 0 high [],deletion SUPT5H NA AC243967.2 CEACAM3 NA NA NA NA NA -SUPV3L1--PPP3CB BS_JSPR854S -3.22773278978801 -1.53097294211019 NA NA differentially expressed no change NA NA 10:69203043 10:73438420 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr10:4.23Mb]],inversion SUPV3L1 NA PPP3CB NA NA NA NA NA NA -SUPV3L1--PPP3CB BS_JSPR854S -3.22773278978801 -1.53097294211019 NA NA differentially expressed no change NA NA 10:69203043 10:73439901 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:4.23Mb]],inversion SUPV3L1 NA PPP3CB NA NA NA NA NA NA -SV2B--SV2B BS_0WVJYM9R -0.181487246901368 -0.181487246901368 NA NA no change no change NA NA 15:91293171 15:91251819 ARRIBA other 2 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.20Mb]],duplication/non-canonical_splicing SV2B NA SV2B NA NA NA NA NA NA -SV2C--SV2C BS_37GTVG4N 0.864156666760159 0.864156666760159 NA NA no change no change NA NA 5:76301545 5:76300729 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.27Mb]],duplication/non-canonical_splicing SV2C NA SV2C NA NA NA NA NA NA -SV2C--SV2C BS_3MS8WVNR 0.0738663945242333 0.0738663945242333 NA NA no change no change NA NA 5:76209887 5:76194919 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.27Mb]],duplication/non-canonical_splicing SV2C NA SV2C NA NA NA NA NA NA -SV2C--SV2C BS_7BTZQKYY -0.00186889846429731 -0.00186889846429731 NA NA no change no change NA NA 5:76301545 5:76300729 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.27Mb]],duplication/non-canonical_splicing SV2C NA SV2C NA NA NA NA NA NA -SV2C--SV2C BS_WCRKYV0T 0.440703668992849 0.440703668992849 NA NA no change no change NA NA 5:76209887 5:76194919 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.27Mb]],duplication/non-canonical_splicing SV2C NA SV2C NA NA NA NA NA NA -SVOP--SVOP BS_CGB2WS2A -0.19140547358948 -0.19140547358948 NA NA no change no change NA NA 12:108934195 12:108945166 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.11Mb]],duplication/non-canonical_splicing SVOP NA SVOP NA NA NA NA NA NA -SVOP--SVOP BS_JXNZYGCR -0.235920951985195 -0.235920951985195 NA NA no change no change NA NA 12:108977398 12:108983761 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.11Mb]],duplication/non-canonical_splicing SVOP NA SVOP NA NA NA NA NA NA -SWT1--ATP6V1G3(2011)/AL157402.1(54768) BS_WKESC3XN 3.30501498985669 10.6738204852815 NA NA differentially expressed differentially expressed NA NA 1:185168398 1:198542956 ARRIBA frameshift 3 1 high [],inversion SWT1 NA ATP6V1G3 AL157402.1 NA NA NA NA NA -SWT1--SWT1 BS_6VPKXXMR 7.48832417453515 7.48832417453515 NA NA differentially expressed differentially expressed NA NA 1:185231708 1:185214290 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],inversion/3'-3' SWT1 NA SWT1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_09Z7TC35 19.6796536106104 19.6796536106104 NA NA differentially expressed differentially expressed NA NA 1:114947320 1:114923449 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_1AYRM596 61.8991235907429 61.8991235907429 NA NA differentially expressed differentially expressed NA NA 1:114947320 1:114923449 ARRIBA frameshift 16 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_2SFTWNVE 19.9131511651988 19.9131511651988 NA NA differentially expressed differentially expressed NA NA 1:114981512 1:114923449 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_3NWQXPQV 42.5687286480153 42.5687286480153 NA NA differentially expressed differentially expressed NA NA 1:114947320 1:114923449 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_4W68NV3M 28.0341451464025 28.0341451464025 NA NA differentially expressed differentially expressed NA NA 1:114947320 1:114923449 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_61E80SD6 20.2578082178762 20.2578082178762 NA NA differentially expressed differentially expressed NA NA 1:114947320 1:114923449 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_7FWZ518S 37.5330330808122 37.5330330808122 NA NA differentially expressed differentially expressed NA NA 1:114895509 1:114874506 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_9M5XJ10G 35.5563328588825 35.5563328588825 NA NA differentially expressed differentially expressed NA NA 1:114981512 1:114923449 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_E3BAT4C1 44.9530406283042 44.9530406283042 NA NA differentially expressed differentially expressed NA NA 1:114947320 1:114923449 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_HF3RNN2T 41.6404622007511 41.6404622007511 NA NA differentially expressed differentially expressed NA NA 1:114981512 1:114923449 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_HHPA8NJ2 26.2502764394737 26.2502764394737 NA NA differentially expressed differentially expressed NA NA 1:114947320 1:114923449 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_HKZENFDA 48.7212821197089 48.7212821197089 NA NA differentially expressed differentially expressed NA NA 1:114947320 1:114923449 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_J8G4SH4Z 26.4529737273257 26.4529737273257 NA NA differentially expressed differentially expressed NA NA 1:114981512 1:114923449 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_K74PZET7 48.1636552569426 48.1636552569426 NA NA differentially expressed differentially expressed NA NA 1:114947320 1:114923449 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_NKRYMHEP 59.0657880259657 59.0657880259657 NA NA differentially expressed differentially expressed NA NA 1:114947320 1:114923449 ARRIBA frameshift 55 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_NZ71XCG3 33.7159601941391 33.7159601941391 NA NA differentially expressed differentially expressed NA NA 1:114913150 1:114885535 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_S1M423AB 65.0475244028002 65.0475244028002 NA NA differentially expressed differentially expressed NA NA 1:114981512 1:114923449 ARRIBA frameshift 33 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_TE0GVDNG 36.1066331114738 36.1066331114738 NA NA differentially expressed differentially expressed NA NA 1:114947320 1:114923449 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_V72H4RQS 33.2524864585232 33.2524864585232 NA NA differentially expressed differentially expressed NA NA 1:114947320 1:114923449 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_VMEX27TN 44.9674411569054 44.9674411569054 NA NA differentially expressed differentially expressed NA NA 1:114947320 1:114923449 ARRIBA frameshift 21 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_VVFBW0YH 34.9635629378621 34.9635629378621 NA NA differentially expressed differentially expressed NA NA 1:114947320 1:114923449 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP1--SYCP1 BS_Y8D1F5WW 20.7073081052413 20.7073081052413 NA NA differentially expressed differentially expressed NA NA 1:114913150 1:114895448 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA -SYCP2--PHACTR3(3857)/RNU7-141P(1099) BS_N6NE6B3W -0.397052744540353 -0.113183415149897 NA NA no change no change NA NA 20:59881078 20:59851568 ARRIBA other 6 0 medium [],duplication SYCP2 NA PHACTR3 RNU7-141P NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10898115 6:10893867 ARRIBA frameshift 14 3 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10942746 6:10912673 ARRIBA frameshift 12 3 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10912927 6:10907542 ARRIBA frameshift 9 0 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10956242 6:10898824 ARRIBA frameshift 1 5 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10963843 6:10907542 ARRIBA frameshift 1 5 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10956242 6:10907542 ARRIBA frameshift 2 4 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10956242 6:10902677 ARRIBA frameshift 1 4 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10958875 6:10907542 ARRIBA frameshift 1 4 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10958875 6:10912673 ARRIBA frameshift 1 3 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10942746 6:10910148 ARRIBA frameshift 1 3 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10926432 6:10907542 ARRIBA frameshift 3 0 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10907684 6:10902677 ARRIBA frameshift 2 0 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10902963 6:10893867 ARRIBA frameshift 2 0 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10930514 6:10910148 ARRIBA frameshift 2 0 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10935187 6:10924496 ARRIBA in-frame 2 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10912927 6:10906020 ARRIBA frameshift 2 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10931489 6:10912673 ARRIBA frameshift 1 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10935187 6:10898824 ARRIBA frameshift 1 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10926432 6:10898824 ARRIBA frameshift 1 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10898848 6:10891513 ARRIBA in-frame 1 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10935187 6:10910148 ARRIBA frameshift 1 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10930514 6:10912673 ARRIBA frameshift 1 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10898115 6:10891513 ARRIBA frameshift 1 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYCP2L--AL024498.2 BS_QEYPFYHD 3.52261746606829 NA NA NA differentially expressed NA NA NA 6:10912927 6:10912673 ARRIBA frameshift 1 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA -SYN1--OTUD5 BS_FCAKKZ20 -0.472503580818694 -0.992596543258492 NA NA no change no change NA NA X:47604978 X:48926050 ARRIBA in-frame 24 2 high [INTRACHROMOSOMAL[chrX:1.30Mb]],duplication SYN1 NA OTUD5 NA NA NA NA NA NA -SYN1--OTUD5 BS_FCAKKZ20 -0.472503580818694 -0.992596543258492 NA NA no change no change NA NA X:47605223 X:48926050 ARRIBA in-frame 1 2 medium [INTRACHROMOSOMAL[chrX:1.30Mb]],duplication SYN1 NA OTUD5 NA NA NA NA NA NA -SYN2--SYN2 BS_NKRYMHEP -1.06188857759394 -1.06188857759394 NA NA no change no change NA NA 3:12169906 3:12140651 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.19Mb]],duplication/non-canonical_splicing SYN2 NA SYN2 NA NA NA NA NA NA -SYNDIG1--CDS2 BS_TXY8QYWA 1.83171719561221 0.627412730164999 NA NA no change no change NA NA 20:24584993 20:5173523 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr20:19.27Mb]],duplication SYNDIG1 NA CDS2 NA NA NA NA NA NA -SYNE2--CTAGE5 BS_K17VQECG 1.60575960229664 -0.428937576020336 NA NA no change no change NA NA 14:64213144 14:39388115 ARRIBA frameshift 29 0 medium [INTRACHROMOSOMAL[chr14:24.46Mb]],inversion/3'-3' SYNE2 NA CTAGE5 NA Oncogene NA NA NA NA -SYNE2--EGLN3-AS1 BS_K17VQECG 1.60575960229664 52.7832926573484 NA NA no change differentially expressed NA NA 14:63853143 14:34059132 ARRIBA other 12 0 medium [INTRACHROMOSOMAL[chr14:29.79Mb]],duplication SYNE2 NA EGLN3-AS1 NA Oncogene NA NA NA NA -SYNE2--RTN1 BS_K17VQECG 1.60575960229664 -0.842666029431606 NA NA no change no change NA NA 14:64213005 14:59607492 ARRIBA frameshift 2 0 low [ChimerSeq,INTRACHROMOSOMAL[chr14:3.98Mb]],inversion SYNE2 NA RTN1 NA Oncogene NA NA NA TCGAFusion -SYNJ2BP--GOLGA8VP BS_479S95Q6 2.05993815445122 5.50971821101142 NA NA differentially expressed differentially expressed NA NA 14:70416900 15:101780116 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr14--chr15]],translocation SYNJ2BP NA GOLGA8VP NA NA NA NA NA NA -SYT16--AC022140.1(170597)/RNU6-374P(84695) BS_6VPKXXMR 1.14927995760286 NA NA NA no change NA NA NA 14:61996542 5:25616522 ARRIBA frameshift 2 1 high [],translocation SYT16 NA AC022140.1 RNU6-374P NA NA NA NA NA -SYT16--AC022140.1(201087)/RNU6-374P(54205) BS_6VPKXXMR 1.14927995760286 NA NA NA no change NA NA NA 14:61970311 5:25647012 ARRIBA frameshift 2 0 medium [],translocation SYT16 NA AC022140.1 RNU6-374P NA NA NA NA NA -SYT16--SYT16 BS_0BXY0F9N 1.48202263409992 1.48202263409992 NA NA no change no change NA NA 14:61996542 14:61970132 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_1T19NFJ8 1.70925585359088 1.70925585359088 NA NA no change no change NA NA 14:61996542 14:61970132 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_273HKCT4 2.80994515203629 2.80994515203629 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 6 3 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_2A5R9MEJ 1.27733265428923 1.27733265428923 NA NA no change no change NA NA 14:61996542 14:61970132 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_2XD3MNKD 0.693917432411148 0.693917432411148 NA NA no change no change NA NA 14:61996542 14:61970132 ARRIBA in-frame 3 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_3KASVCSQ 3.06851578785433 3.06851578785433 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_42DY6WS7 2.34660400359023 2.34660400359023 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_66HQ3E4Z 1.5353548168685 1.5353548168685 NA NA no change no change NA NA 14:61996542 14:61970132 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_6MY8W3H0 3.82784908967037 3.82784908967037 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_78QX3XDF 0.365493713819658 0.365493713819658 NA NA no change no change NA NA 14:61996542 14:61970132 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_7B89YR6K 2.6803661487494 2.6803661487494 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_8RHPJ740 0.432969485419892 0.432969485419892 NA NA no change no change NA NA 14:61996542 14:61970132 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_CREQ97QC 2.60224622108294 2.60224622108294 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_DBDXCXT5 2.54968089538996 2.54968089538996 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_DMZP9G1H 3.97167566826406 3.97167566826406 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_DRD9QXR5 1.84275036644414 1.84275036644414 NA NA no change no change NA NA 14:61996542 14:61970132 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_EHVYJAVA 1.48202263409992 1.48202263409992 NA NA no change no change NA NA 14:61996542 14:61970132 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_F8N6CFQE 1.12178776202601 1.12178776202601 NA NA no change no change NA NA 14:61996542 14:61970132 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_FWMJPKCV 2.40191041210383 2.40191041210383 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_GYA4V1RD 1.27733265428923 1.27733265428923 NA NA no change no change NA NA 14:61996542 14:61970132 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_HCP5C912 3.01505825376043 3.01505825376043 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 13 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_J483EMFP 2.11924523263903 2.11924523263903 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_JVW2JJ39 2.35092626534974 2.35092626534974 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_K5802F84 2.40747718935372 2.40747718935372 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 7 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_KPT2WPHW 3.8478964408152 3.8478964408152 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_M4NVX721 3.01410441987578 3.01410441987578 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 6 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_NT9NZYFD 1.34580618363517 1.34580618363517 NA NA no change no change NA NA 14:61996542 14:61970132 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_QNAQGAV6 2.78704599074909 2.78704599074909 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 4 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_QV51J756 3.15035291665742 3.15035291665742 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_QWNBZ9RJ 3.1608415110151 3.1608415110151 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 9 3 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_R7HZCZ8B 2.59360333495554 2.59360333495554 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_RHD7XPNP 3.78521736379125 3.78521736379125 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_TDEFAPNH 3.19787575365662 3.19787575365662 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_TG93XC55 4.30490283635451 4.30490283635451 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 8 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_TNRHHYNC 1.25195348667237 1.25195348667237 NA NA no change no change NA NA 14:61996542 14:61970132 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_V96WVE3Z 1.43703745030155 1.43703745030155 NA NA no change no change NA NA 14:61996542 14:61970132 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_VMMJYN8Z 3.00932677861775 3.00932677861775 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 10 4 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_WCRKYV0T 4.31431107587317 4.31431107587317 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 14 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_WFD0GE5X 2.70250501050344 2.70250501050344 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_WH5HDE0A 0.993596334563027 0.993596334563027 NA NA no change no change NA NA 14:61996542 14:61970132 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_WSQMAA33 0.399584110649563 0.399584110649563 NA NA no change no change NA NA 14:61996542 14:61995876 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_XJTW0P8P 4.27328584790204 4.27328584790204 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 19 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_YB2RXRHT 2.92989170413631 2.92989170413631 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_Z8YZ6QGS 2.50844988998176 2.50844988998176 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_ZR96A4FH 2.97743468758058 2.97743468758058 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_ZXYDSBM9 2.3552369856756 2.3552369856756 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT16--SYT16 BS_ZZPBANDD 2.43229283464786 2.43229283464786 NA NA differentially expressed differentially expressed NA NA 14:61996542 14:61970132 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA -SYT9--PRR5L BS_FW5ECXXK -0.22820986294918 0.424136507035076 NA NA no change no change NA NA 11:7313941 11:36432860 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr11:28.83Mb]],inversion/3'-3' SYT9 NA PRR5L NA NA NA NA NA NA -SYTL2--CHKA BS_CZ3NA7KV -1.32249436408835 -2.58159127119654 NA NA no change differentially expressed NA NA 11:85707429 11:68070857 ARRIBA in-frame 5 2 high [INTRACHROMOSOMAL[chr11:17.57Mb]],deletion SYTL2 NA CHKA NA NA Oncogene, Kinase NA NA NA -SYTL5--SYTL5 BS_KX6J8TRK -0.0582812966755211 -0.0582812966755211 NA NA no change no change NA NA X:38054422 X:38033534 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.12Mb]],duplication/non-canonical_splicing SYTL5 NA SYTL5 NA NA NA NA NA NA -SYVN1--C11orf95 BS_EK5PCKY0 -1.08104700812133 2.83030160813892 NA NA no change differentially expressed NA NA 11:65128929 11:63765288 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr11:1.35Mb]],deletion SYVN1 NA C11orf95 NA NA NA NA NA NA -TAAR9(7366)/TAAR8(5991)--MAP3K5 BS_3F4FQJMR 2.25094471484553 0.161093290489682 -0.219358000129583 NA differentially expressed no change no change NA 6:132546702 6:136622981 ARRIBA other 4 0 high [],duplication TAAR9 TAAR8 MAP3K5 NA NA Kinase, Kinase NA NA NA -TACC1--AF279873.3(94581)/AC087855.2(41297) BS_R439VVPK -1.04161637818067 NA NA NA no change NA NA NA 8:38820635 8:34133589 ARRIBA frameshift 2 1 high [],duplication TACC1 NA AF279873.3 AC087855.2 Oncogene NA NA NA NA -TACC1--FGFR1 BS_TDEFAPNH 2.5274903204582 1.88385285406245 NA NA differentially expressed no change NA NA 8:38831177 8:38412595 ARRIBA frameshift 3 0 medium [GTEx,INTRACHROMOSOMAL[chr8:0.26Mb]],inversion TACC1 NA FGFR1 NA Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -TACC1--TACC1 BS_1D6PZNKN 2.8282523643421 2.8282523643421 NA NA differentially expressed differentially expressed NA NA 8:38840267 8:38772644 ARRIBA frameshift 216 33 high [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.12Mb]],inversion/3'-3' TACC1 NA TACC1 NA Oncogene Oncogene NA NA NA -TACR3--TACR3 BS_64HCD9K3 15.6767508424161 15.6767508424161 NA NA differentially expressed differentially expressed NA NA 4:103656194 4:103658403 ARRIBA frameshift 17 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA -TACR3--TACR3 BS_6YMJ621P 7.17693374076643 7.17693374076643 NA NA differentially expressed differentially expressed NA NA 4:103656194 4:103658403 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA -TACR3--TACR3 BS_8MA5B8Y9 6.20779433866548 6.20779433866548 NA NA differentially expressed differentially expressed NA NA 4:103656194 4:103658403 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA -TACR3--TACR3 BS_CHDGRYHJ 11.1828606900138 11.1828606900138 NA NA differentially expressed differentially expressed NA NA 4:103656194 4:103658403 ARRIBA frameshift 18 2 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA -TACR3--TACR3 BS_GCQFGDTX 7.01236637621921 7.01236637621921 NA NA differentially expressed differentially expressed NA NA 4:103656194 4:103658403 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA -TACR3--TACR3 BS_HKZENFDA 5.74368701235567 5.74368701235567 NA NA differentially expressed differentially expressed NA NA 4:103656194 4:103658403 ARRIBA frameshift 15 2 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA -TACR3--TACR3 BS_JFB984RG 4.10885542099856 4.10885542099856 NA NA differentially expressed differentially expressed NA NA 4:103656194 4:103658403 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA -TACR3--TACR3 BS_KVNGNETA 6.19547341029904 6.19547341029904 NA NA differentially expressed differentially expressed NA NA 4:103656194 4:103658403 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA -TACR3--TACR3 BS_V72H4RQS 14.6854742018127 14.6854742018127 NA NA differentially expressed differentially expressed NA NA 4:103656194 4:103658403 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA -TACR3--TACR3 BS_W36RZSFA 10.1393993614999 10.1393993614999 NA NA differentially expressed differentially expressed NA NA 4:103656194 4:103658403 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA -TADA1--AC138701.1(1320397) BS_W60RQAKK 0.105543292809888 NA NA NA no change NA NA NA 1:166858119 15:18558158 ARRIBA frameshift 3 0 medium [],translocation TADA1 NA AC138701.1 NA NA NA NA NA NA -TAF1--AL590762.3(33207)/AL590762.2(3332) BS_WSQMAA33 4.8570149885607 NA NA NA differentially expressed NA NA NA X:71408151 X:71349086 ARRIBA frameshift 24 1 high [],inversion TAF1 NA AL590762.3 AL590762.2 Kinase NA NA NA NA -TAF1--MARK2P4(30262)/WDR17(21155) BS_6VPKXXMR 2.1986991504319 -0.0451743159528945 NA 1.03171478948016 differentially expressed no change NA no change X:71460803 4:176044679 ARRIBA frameshift 2 0 medium [],translocation TAF1 NA MARK2P4 WDR17 Kinase NA NA NA NA -TAF1--WDR17 BS_6VPKXXMR 2.1986991504319 1.03171478948016 NA NA differentially expressed no change NA NA X:71460803 4:176111575 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chrX--chr4]],translocation TAF1 NA WDR17 NA Kinase NA NA NA NA -TAF3--LINC01518 BS_40MP5BWR 0.527157829022852 49.14837911838 NA NA no change differentially expressed NA NA 10:7824560 10:42686016 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr10:34.66Mb]],inversion TAF3 NA LINC01518 NA NA NA NA NA NA -TAF3--LINC01518 BS_40MP5BWR 0.527157829022852 49.14837911838 NA NA no change differentially expressed NA NA 10:7824560 10:42683460 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:34.66Mb]],inversion TAF3 NA LINC01518 NA NA NA NA NA NA -TAF4B--TAF4B BS_BPWEFR89 1.89827253614122 1.89827253614122 NA NA no change no change NA NA 18:26267623 18:26265170 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.17Mb]],duplication/non-canonical_splicing TAF4B NA TAF4B NA NA NA NA NA NA -TAF4B--TAF4B BS_N6NE6B3W 0.546697370276862 0.546697370276862 NA NA no change no change NA NA 18:26267623 18:26265170 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.17Mb]],duplication/non-canonical_splicing TAF4B NA TAF4B NA NA NA NA NA NA -TAF6--AC002454.1(21938)/RN7SL7P(31877) BS_84XCR9GG 1.22210876224419 14.4144339474266 NA 23.5004433890727 no change differentially expressed NA differentially expressed 7:100114186 7:92939125 ARRIBA other 13 4 medium [],inversion TAF6 NA AC002454.1 RN7SL7P NA NA NA NA NA -TAF6--INPP5A BS_84XCR9GG 1.22210876224419 -1.66710032916192 NA NA no change no change NA NA 7:100119204 10:132679223 ARRIBA other 10 0 high [INTERCHROMOSOMAL[chr7--chr10]],translocation/5'-5' TAF6 NA INPP5A NA NA NA NA NA NA -TAMM41--ERC2 BS_S6S7SK3P 4.92300017612792 -1.57315343329975 NA NA differentially expressed no change NA NA 3:11801893 3:55982738 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr3:43.66Mb]],inversion/5'-5' TAMM41 NA ERC2 NA NA Oncogene NA NA NA -TANC1--HTRA1 BS_479S95Q6 4.39847007073968 -0.0225372146611391 NA NA differentially expressed no change NA NA 2:159065971 10:122488902 ARRIBA in-frame 91 12 high [INTERCHROMOSOMAL[chr2--chr10]],translocation TANC1 NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA -TANC2--AC109439.2(25757)/AC109439.1(77185) BS_YB07VF1X 3.96427866290767 NA NA NA differentially expressed NA NA NA 17:63238077 5:136780443 ARRIBA frameshift 4 0 high [],translocation TANC2 NA AC109439.2 AC109439.1 NA NA NA NA NA -TANC2--CDH13 BS_D29RPBSZ 3.10084993339276 0.19218187942394 NA NA differentially expressed no change NA NA 17:63200957 16:83670790 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr17--chr16]],translocation TANC2 NA CDH13 NA NA TumorSuppressorGene, Oncogene NA NA NA -TANC2--ITCH BS_TRKH2SPE 2.97543436033753 1.87669012567379 NA NA differentially expressed no change NA NA 17:63238077 20:34369394 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr17--chr20]],translocation TANC2 NA ITCH NA NA NA NA NA NA -TANC2--LINC01538 BS_4B0BAVTX 3.04772564208562 33.2531718614697 NA NA differentially expressed differentially expressed NA NA 17:63099357 18:64258519 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr17--chr18]],translocation TANC2 NA LINC01538 NA NA NA NA NA NA -TANC2--LINC01924 BS_4B0BAVTX 3.04772564208562 NA NA NA differentially expressed NA NA NA 17:63099357 18:64264491 ARRIBA frameshift 7 0 high [INTERCHROMOSOMAL[chr17--chr18]],translocation/5'-5' TANC2 NA LINC01924 NA NA NA NA NA NA -TANGO6--KIFC3 BS_11WY983P 9.46865264229462 2.64354386853362 NA NA differentially expressed differentially expressed NA NA 16:68930295 16:57788713 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr16:10.98Mb]],inversion TANGO6 NA KIFC3 NA NA NA NA NA NA -TANGO6--KIFC3 BS_11WY983P 9.46865264229462 2.64354386853362 NA NA differentially expressed differentially expressed NA NA 16:68944667 16:57788710 ARRIBA other 12 2 medium [INTRACHROMOSOMAL[chr16:10.98Mb]],inversion TANGO6 NA KIFC3 NA NA NA NA NA NA -TANK--AC062031.1(173405)/RNU7-2P(40605) BS_81SP2HX4 2.61746320574556 -0.23488732253055 NA NA differentially expressed no change NA NA 2:161204793 2:146104551 ARRIBA frameshift 27 5 high [],inversion TANK NA AC062031.1 RNU7-2P TumorSuppressorGene NA NA NA NA -TAOK1--TAOK1 BS_EK5PCKY0 4.40636740002517 4.40636740002517 NA NA differentially expressed differentially expressed NA NA 17:29477706 17:29451455 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.16Mb]],duplication/non-canonical_splicing TAOK1 NA TAOK1 NA Kinase Kinase NA NA NA -TAOK3--TAOK3 BS_1EBQ3T20 -0.715184669687764 -0.715184669687764 NA NA no change no change NA NA 12:118151093 12:118189940 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.22Mb]],duplication/non-canonical_splicing TAOK3 NA TAOK3 NA Kinase Kinase NA NA NA -TAPT1-AS1(16913)/ZEB2P1(23633)--TAPT1-AS1 BS_NRPG5K4K 4.72388867966907 4.72388867966907 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16337053 4:16256257 ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_1T19NFJ8 8.07898908079827 8.07898908079827 -0.708378707465621 NA differentially expressed differentially expressed no change NA 4:16323036 4:16288884 ARRIBA other 2 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_5YJEPPTP 6.02935117442531 6.02935117442531 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16323036 4:16256257 ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_7BTZQKYY 9.11174575257114 9.11174575257114 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16323036 4:16288884 ARRIBA other 10 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_9PB3XH5D 9.56416856773161 9.56416856773161 -0.708378707465621 NA differentially expressed differentially expressed no change NA 4:16323036 4:16288884 ARRIBA other 2 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_9RT63JD9 8.30852583457322 8.30852583457322 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16323036 4:16288884 ARRIBA other 4 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_AG3D3435 5.58162691228698 5.58162691228698 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16323036 4:16256257 ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_AMQGM1V9 3.7546697735808 3.7546697735808 -0.643375490752457 NA differentially expressed differentially expressed no change NA 4:16323036 4:16288884 ARRIBA other 4 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_CHDGRYHJ 7.72780946157933 7.72780946157933 -0.643375490752457 NA differentially expressed differentially expressed no change NA 4:16323036 4:16288884 ARRIBA other 3 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_CW9QV8AG 6.0412620514683 6.0412620514683 -0.774022360269499 NA differentially expressed differentially expressed no change NA 4:16323036 4:16256257 ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_DGTPWJ59 6.17053922419353 6.17053922419353 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16323036 4:16288884 ARRIBA other 2 1 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_F6Z5HFWH 8.76816097375454 8.76816097375454 -0.452086461498195 NA differentially expressed differentially expressed no change NA 4:16323036 4:16288884 ARRIBA other 3 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_FWMJPKCV 6.65815719987422 6.65815719987422 -0.774022360269499 NA differentially expressed differentially expressed no change NA 4:16323036 4:16256257 ARRIBA other 1 1 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_H1XPVS9A 3.58695817225323 3.58695817225323 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16323036 4:16288884 ARRIBA other 2 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_JVA2NQFF 6.72129506382766 6.72129506382766 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16323036 4:16288884 ARRIBA other 2 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_ME3HKN2C 6.35310501321454 6.35310501321454 -0.708378707465621 NA differentially expressed differentially expressed no change NA 4:16323036 4:16256257 ARRIBA other 1 1 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_RHD7XPNP 7.84748222405159 7.84748222405159 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16323036 4:16256257 ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_SAA624A4 4.53742914367602 4.53742914367602 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16323036 4:16288884 ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_TRKH2SPE 9.52124633261016 9.52124633261016 -0.708378707465621 NA differentially expressed differentially expressed no change NA 4:16323036 4:16256257 ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_XQYHPBFS 7.80505250412611 7.80505250412611 -0.579000334261714 NA differentially expressed differentially expressed no change NA 4:16323036 4:16256257 ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_0BXY0F9N 7.35161018128186 7.35161018128186 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 3 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_0WVJYM9R 7.66694080108851 7.66694080108851 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16238771 ARRIBA other 1 3 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_1T19NFJ8 8.07898908079827 8.07898908079827 -0.708378707465621 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 4 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_2ADZNNV4 3.35472421559583 3.35472421559583 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 4 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_34201DKZ 7.68440353345609 7.68440353345609 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16256257 ARRIBA other 4 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_3F4FQJMR 6.51871330106399 6.51871330106399 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 4 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_3X9WMZGJ 4.76949303540638 4.76949303540638 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 5 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_49BQS7Z6 5.99345655116848 5.99345655116848 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 3 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_4B0BAVTX 8.43858601683997 8.43858601683997 -0.643375490752457 NA differentially expressed differentially expressed no change NA 4:16355785 4:16238771 ARRIBA other 3 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_5K3R0F5D 5.10663058735711 5.10663058735711 -0.774022360269499 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 2 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_5PEFNDCY 6.55122092199407 6.55122092199407 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 7 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_8Q77HZ4R 8.99061370464678 8.99061370464678 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16238771 ARRIBA other 2 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_8RCR7Y4B 6.22827173032068 6.22827173032068 -0.774022360269499 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 2 1 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_8RHPJ740 6.21677559579311 6.21677559579311 -0.774022360269499 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 4 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_9RT63JD9 8.30852583457322 8.30852583457322 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 4 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_B741RZY9 7.89795208310038 7.89795208310038 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16238771 ARRIBA other 3 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_BKR4E30C 7.42536316614481 7.42536316614481 -0.774022360269499 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 3 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_CW9QV8AG 6.0412620514683 6.0412620514683 -0.774022360269499 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 4 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_E4F1D721 7.97276410545368 7.97276410545368 -0.708378707465621 NA differentially expressed differentially expressed no change NA 4:16355785 4:16238771 ARRIBA other 2 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_E4GC9EXR 5.48998322072137 5.48998322072137 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 2 2 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_EK5PCKY0 5.95731635275322 5.95731635275322 -0.643375490752457 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 1 1 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_FAVRBEW7 7.44364163327675 7.44364163327675 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 3 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_G9XE3N9T 6.65815719987422 6.65815719987422 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 3 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_GV3NZ9QD 7.22001155313341 7.22001155313341 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16256257 ARRIBA other 2 1 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_GWCRMKE6 5.26056780870124 5.26056780870124 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 3 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_HC44ZA0V 8.70387046339525 8.70387046339525 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 1 1 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_HCP5C912 5.94521446491605 5.94521446491605 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 6 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_JX449BF5 9.48417620342399 9.48417620342399 -0.708378707465621 NA differentially expressed differentially expressed no change NA 4:16355785 4:16238771 ARRIBA other 1 2 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_KVNGNETA 8.33941757015805 8.33941757015805 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16238771 ARRIBA other 2 2 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_M1T1K5WV 8.02205657880499 8.02205657880499 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16287711 ARRIBA other 3 2 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_M4NVX721 4.10933124282738 4.10933124282738 -0.774022360269499 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 4 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_N8J1DP02 4.29470014771705 4.29470014771705 -0.32754495011442 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 7 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_NDN62H0S 9.58245758218244 9.58245758218244 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16238771 ARRIBA other 1 1 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_NRPG5K4K 4.72388867966907 4.72388867966907 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16238771 ARRIBA other 3 2 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_Q5WZYWCT 8.05466453253463 8.05466453253463 -0.774022360269499 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 4 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_QSTAVWGE 8.30852583457322 8.30852583457322 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 9 2 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_RHD7XPNP 7.84748222405159 7.84748222405159 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 5 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_SAA624A4 4.53742914367602 4.53742914367602 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 3 2 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_SDCNP7MW 10.1802436874614 10.1802436874614 -0.643375490752457 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 2 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_TG93XC55 5.36977007957435 5.36977007957435 -0.708378707465621 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 2 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_VPMKHW9X 5.72250117360101 5.72250117360101 -0.515241217424189 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 1 2 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_VR7FR1NE 6.74217442591378 6.74217442591378 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 2 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_W18SF91A 6.93651766569021 6.93651766569021 -0.774022360269499 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 6 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_WCRKYV0T 5.64612675795035 5.64612675795035 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 3 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_X59HSFGG 7.21048500099234 7.21048500099234 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16256257 ARRIBA other 1 3 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_X67GTEM6 7.16259281682195 7.16259281682195 -0.708378707465621 NA differentially expressed differentially expressed no change NA 4:16355785 4:16320065 ARRIBA other 6 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_YB2RXRHT 4.53742914367602 4.53742914367602 -0.774022360269499 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 3 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_YE1MAQYJ 7.17220605283359 7.17220605283359 -0.774022360269499 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 2 1 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_Z85M2R3N 6.86574665096261 6.86574665096261 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 3 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_ZR96A4FH 6.39777734481901 6.39777734481901 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16355785 4:16288884 ARRIBA other 3 2 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(40496)/ZEB2P1(50)--TAPT1-AS1 BS_NKRYMHEP 6.21677559579311 6.21677559579311 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16360636 4:16238771 ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(5825)/ZEB2P1(34721)--TAPT1-AS1 BS_0BXY0F9N 7.35161018128186 7.35161018128186 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16325965 4:16288884 ARRIBA other 2 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(5825)/ZEB2P1(34721)--TAPT1-AS1 BS_JFR750KD 8.71822501497433 8.71822501497433 -0.774022360269499 NA differentially expressed differentially expressed no change NA 4:16325965 4:16320065 ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(5825)/ZEB2P1(34721)--TAPT1-AS1 BS_W4HGV6E7 6.14726838598462 6.14726838598462 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16325965 4:16238771 ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(8520)/ZEB2P1(32026)--TAPT1-AS1 BS_D3YBV7KB 6.11216877691102 6.11216877691102 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16328660 4:16238771 ARRIBA other 1 1 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(8520)/ZEB2P1(32026)--TAPT1-AS1 BS_FAVRBEW7 7.44364163327675 7.44364163327675 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16328660 4:16238771 ARRIBA other 2 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(8520)/ZEB2P1(32026)--TAPT1-AS1 BS_PKK3BZRG 11.4580558963709 11.4580558963709 -0.266136433712149 NA differentially expressed differentially expressed no change NA 4:16328660 4:16288884 ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TAPT1-AS1(8520)/ZEB2P1(32026)--TAPT1-AS1 BS_QSTAVWGE 8.30852583457322 8.30852583457322 -0.840319194473304 NA differentially expressed differentially expressed no change NA 4:16328660 4:16238771 ARRIBA other 1 3 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA -TARSL2--WDR88 BS_AZN38B7V -1.26578989974561 2.1546366944178 NA NA no change differentially expressed NA NA 15:101723093 19:33147645 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr15--chr19]],translocation TARSL2 NA WDR88 NA NA NA NA NA NA -TARSL2--WFS1 BS_91VYM11A 2.99090260133463 1.9730468469766 NA NA differentially expressed no change NA NA 15:101711880 4:6287093 ARRIBA in-frame 45 3 high [INTERCHROMOSOMAL[chr15--chr4]],translocation TARSL2 NA WFS1 NA NA NA NA NA NA -TARSL2--WFS1 BS_H0QWRJE2 3.05182618195255 2.34231821284739 NA NA differentially expressed differentially expressed NA NA 15:101711880 4:6287093 ARRIBA in-frame 161 10 high [INTERCHROMOSOMAL[chr15--chr4]],translocation TARSL2 NA WFS1 NA NA NA NA NA NA -TARSL2--WFS1 BS_H0QWRJE2 3.05182618195255 2.34231821284739 NA NA differentially expressed differentially expressed NA NA 15:101721126 4:6287093 ARRIBA frameshift 1 2 medium [INTERCHROMOSOMAL[chr15--chr4]],translocation TARSL2 NA WFS1 NA NA NA NA NA NA -TARSL2--WFS1 BS_TJTEF70D 2.14188055572536 1.20738126614417 NA NA differentially expressed no change NA NA 15:101711880 4:6287093 ARRIBA in-frame 45 8 high [INTERCHROMOSOMAL[chr15--chr4]],translocation TARSL2 NA WFS1 NA NA NA NA NA NA -TARSL2--WFS1 BS_TJTEF70D 2.14188055572536 1.20738126614417 NA NA differentially expressed no change NA NA 15:101721126 4:6287093 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr15--chr4]],translocation TARSL2 NA WFS1 NA NA NA NA NA NA -TARSL2--WFS1 BS_TK84K675 2.29308054697854 1.26661758356245 NA NA differentially expressed no change NA NA 15:101711880 4:6287093 ARRIBA in-frame 58 9 high [INTERCHROMOSOMAL[chr15--chr4]],translocation TARSL2 NA WFS1 NA NA NA NA NA NA -TARSL2--WFS1 BS_TK84K675 2.29308054697854 1.26661758356245 NA NA differentially expressed no change NA NA 15:101721126 4:6287093 ARRIBA frameshift 3 3 medium [INTERCHROMOSOMAL[chr15--chr4]],translocation TARSL2 NA WFS1 NA NA NA NA NA NA -TARSL2--ZNF609 BS_H0QWRJE2 3.05182618195255 1.94623115953513 NA NA differentially expressed no change NA NA 15:101710818 15:64562145 ARRIBA other 35 5 medium [INTRACHROMOSOMAL[chr15:36.97Mb]],inversion TARSL2 NA ZNF609 NA NA TranscriptionFactor NA NA NA -TARSL2--ZNF609 BS_TK84K675 2.29308054697854 2.49853611149369 NA NA differentially expressed differentially expressed NA NA 15:101710818 15:64562145 ARRIBA other 12 1 medium [INTRACHROMOSOMAL[chr15:36.97Mb]],inversion TARSL2 NA ZNF609 NA NA TranscriptionFactor NA NA NA -TATDN1--AC104958.2(30164)/AC068413.1(69542) BS_X23724NJ -0.605365289763495 NA NA NA no change NA NA NA 8:124539025 8:120843523 ARRIBA frameshift 44 0 medium [],deletion TATDN1 NA AC104958.2 AC068413.1 NA NA NA NA NA -TATDN1--AC105180.1(156510)/ZFAT(831) BS_WMEHNDSK 8.61895432121722 NA NA 15.2368026122682 differentially expressed NA NA differentially expressed 8:124495472 8:134476957 ARRIBA frameshift 15 2 medium [],duplication TATDN1 NA AC105180.1 ZFAT NA NA NA TranscriptionFactor NA -TATDN1--SNTB1 BS_X23724NJ -0.605365289763495 6.51779075670577 NA NA no change differentially expressed NA NA 8:124539025 8:120812069 ARRIBA frameshift 62 0 high [INTRACHROMOSOMAL[chr8:3.68Mb]],deletion TATDN1 NA SNTB1 NA NA NA NA NA NA -TATDN1--SNTB1 BS_X23724NJ -0.605365289763495 6.51779075670577 NA NA no change differentially expressed NA NA 8:124538928 8:120812069 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr8:3.68Mb]],deletion TATDN1 NA SNTB1 NA NA NA NA NA NA -TATDN1--SNTB1 BS_X23724NJ -0.605365289763495 6.51779075670577 NA NA no change differentially expressed NA NA 8:124539025 8:120693908 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr8:3.68Mb]],deletion TATDN1 NA SNTB1 NA NA NA NA NA NA -TAX1BP1--AC004870.3(154879)/TNS3(41147) BS_1A6MQ9ZA 0.35597913222634 NA NA -1.2822851850093 no change NA NA no change 7:27829074 7:47234007 ARRIBA other 6 0 medium [],inversion TAX1BP1 NA AC004870.3 TNS3 NA NA NA NA NA -TAX1BP1--AC092648.1(230589)/AC092637.1(19196) BS_N4B1SZZH 1.06876085910111 NA NA NA no change NA NA NA 7:27769834 7:68001057 ARRIBA frameshift 3 0 medium [],inversion TAX1BP1 NA AC092648.1 AC092637.1 NA NA NA NA NA -TAX1BP1--BRAF BS_HX0S30NE 0.613524029262006 2.35413687712063 NA NA no change differentially expressed NA NA 7:27769834 7:140787584 ARRIBA in-frame 13 1 high [INTRACHROMOSOMAL[chr7:112.87Mb]],inversion TAX1BP1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -TAX1BP1--BRAF BS_YB2RXRHT 0.660372374193481 2.32818000980563 NA NA no change differentially expressed NA NA 7:27769834 7:140787584 ARRIBA in-frame 5 2 high [INTRACHROMOSOMAL[chr7:112.87Mb]],inversion TAX1BP1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -TBC1D15--NAV3 BS_W36RZSFA 0.789087028054701 -0.285619663686118 NA NA no change no change NA NA 12:71921454 12:78027986 ARRIBA frameshift 13 1 high [INTRACHROMOSOMAL[chr12:5.40Mb]],deletion TBC1D15 NA NAV3 NA NA NA NA NA NA -TBC1D19(14501)/STIM2(87826)--TBC1D19 BS_W41S7B55 1.57419219480834 1.57419219480834 1.50991483009186 NA no change no change no change NA 4:26769852 4:26720081 ARRIBA other 1 0 low [],duplication TBC1D19 STIM2 TBC1D19 NA NA NA NA NA NA -TBC1D19(14501)/STIM2(87826)--TBC1D19 BS_XHCYEE2S 2.83611359484391 2.83611359484391 2.94905292722362 NA differentially expressed differentially expressed differentially expressed NA 4:26769852 4:26717933 ARRIBA other 1 0 low [],duplication TBC1D19 STIM2 TBC1D19 NA NA NA NA NA NA -TBC1D19(9386)/STIM2(92941)--TBC1D19 BS_7G42J2SK 4.04754351265631 4.04754351265631 1.23102324642887 NA differentially expressed differentially expressed no change NA 4:26764737 4:26666333 ARRIBA other 1 0 low [],duplication TBC1D19 STIM2 TBC1D19 NA NA NA NA NA NA -TBC1D19(9386)/STIM2(92941)--TBC1D19 BS_F5BZSF3Q 0.643856934123246 0.643856934123246 1.07787015726959 NA no change no change no change NA 4:26764737 4:26637211 ARRIBA other 1 0 low [],duplication TBC1D19 STIM2 TBC1D19 NA NA NA NA NA NA -TBC1D19(9386)/STIM2(92941)--TBC1D19 BS_TBWYAFSM 2.39537370602672 2.39537370602672 3.16619331275957 NA differentially expressed differentially expressed differentially expressed NA 4:26764737 4:26735455 ARRIBA other 1 0 low [],duplication TBC1D19 STIM2 TBC1D19 NA NA NA NA NA NA -TBC1D19(9386)/STIM2(92941)--TBC1D19 BS_WRHDP7WF 2.8452278670938 2.8452278670938 -0.315964664461429 NA differentially expressed differentially expressed no change NA 4:26764737 4:26637211 ARRIBA other 1 0 low [],duplication TBC1D19 STIM2 TBC1D19 NA NA NA NA NA NA -TBC1D22A--ZNRF3 BS_QX12J6W1 -0.48662965057614 0.184866184384724 NA NA no change no change NA NA 22:46762848 22:29042495 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr22:17.71Mb]],duplication TBC1D22A NA ZNRF3 NA NA CosmicCensus NA NA NA -TBC1D7--SSR1 BS_S69QZAJR -0.603556183015862 1.95140413774828 NA NA no change no change NA NA 6:13325094 6:7310029 ARRIBA in-frame 10 3 high [INTRACHROMOSOMAL[chr6:5.92Mb]],deletion TBC1D7 NA SSR1 NA NA NA NA NA NA -TBC1D7--SSR1 BS_S69QZAJR -0.603556183015862 1.95140413774828 NA NA no change no change NA NA 6:13326787 6:7310029 ARRIBA in-frame 8 1 high [INTRACHROMOSOMAL[chr6:5.92Mb]],deletion TBC1D7 NA SSR1 NA NA NA NA NA NA -TBCE--GGPS1 BS_M4NVX721 -1.50366429355164 0.368576852072616 NA NA no change no change NA NA 1:235401587 1:235335242 ARRIBA frameshift 3 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.02Mb],LOCAL_REARRANGEMENT:+:[22828]],duplication TBCE NA GGPS1 NA NA NA NA NA TCGAFusion -TBCE--GGPS1 BS_M4NVX721 -1.50366429355164 0.368576852072616 NA NA no change no change NA NA 1:235380149 1:235335242 ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.02Mb],LOCAL_REARRANGEMENT:+:[22828]],duplication TBCE NA GGPS1 NA NA NA NA NA TCGAFusion -TBCE--GGPS1 BS_M4NVX721 -1.50366429355164 0.368576852072616 NA NA no change no change NA NA 1:235380149 1:235341708 ARRIBA in-frame 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.02Mb],LOCAL_REARRANGEMENT:+:[22828]],duplication TBCE NA GGPS1 NA NA NA NA NA TCGAFusion -TBCEL--SORL1 BS_2A162JH9 2.6093438160671 1.07040817123263 NA NA differentially expressed no change NA NA 11:121024291 11:121622162 ARRIBA other 23 2 high [INTRACHROMOSOMAL[chr11:0.36Mb]],deletion TBCEL NA SORL1 NA NA Oncogene NA NA NA -TBCEL--SORL1 BS_2A162JH9 2.6093438160671 1.07040817123263 NA NA differentially expressed no change NA NA 11:121036612 11:121622162 ARRIBA other 7 2 high [INTRACHROMOSOMAL[chr11:0.36Mb]],deletion TBCEL NA SORL1 NA NA Oncogene NA NA NA -TBCEL--SORL1 BS_2A162JH9 2.6093438160671 1.07040817123263 NA NA differentially expressed no change NA NA 11:121024291 11:121625085 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.36Mb]],deletion TBCEL NA SORL1 NA NA Oncogene NA NA NA -TBCEL--SORL1 BS_BWBDH9GM 2.17719037419828 0.921720287066974 NA NA differentially expressed no change NA NA 11:121024291 11:121622162 ARRIBA other 28 2 high [INTRACHROMOSOMAL[chr11:0.36Mb]],deletion TBCEL NA SORL1 NA NA Oncogene NA NA NA -TBCEL--SORL1 BS_BWBDH9GM 2.17719037419828 0.921720287066974 NA NA differentially expressed no change NA NA 11:121036612 11:121622162 ARRIBA other 7 3 high [INTRACHROMOSOMAL[chr11:0.36Mb]],deletion TBCEL NA SORL1 NA NA Oncogene NA NA NA -TBCEL--SORL1 BS_BWBDH9GM 2.17719037419828 0.921720287066974 NA NA differentially expressed no change NA NA 11:121024291 11:121625085 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr11:0.36Mb]],deletion TBCEL NA SORL1 NA NA Oncogene NA NA NA -TBCEL--SORL1 BS_BWBDH9GM 2.17719037419828 0.921720287066974 NA NA differentially expressed no change NA NA 11:121024154 11:121625085 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.36Mb]],deletion TBCEL NA SORL1 NA NA Oncogene NA NA NA -TBCK--TBCK BS_CXVJK2FY 1.26675779030146 1.26675779030146 NA NA no change no change NA NA 4:106242470 4:106252007 ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr4:0.28Mb]],duplication/non-canonical_splicing TBCK NA TBCK NA Kinase, Kinase Kinase, Kinase NA NA NA -TBCK--TBCK BS_CZ3NA7KV 1.54832536694166 1.54832536694166 NA NA no change no change NA NA 4:106242470 4:106252007 ARRIBA frameshift 5 2 low [SELFIE,INTRACHROMOSOMAL[chr4:0.28Mb]],duplication/non-canonical_splicing TBCK NA TBCK NA Kinase, Kinase Kinase, Kinase NA NA NA -TBCK--TBCK BS_EK5PCKY0 1.63563247189256 1.63563247189256 NA NA no change no change NA NA 4:106212750 4:106237538 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.28Mb]],duplication/non-canonical_splicing TBCK NA TBCK NA Kinase, Kinase Kinase, Kinase NA NA NA -TBK1--AC012158.1 BS_SD8YBRBR 3.93417984819648 NA NA NA differentially expressed NA NA NA 12:64490119 12:64350442 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr12:0.05Mb],LOCAL_REARRANGEMENT:+:[54815]],duplication TBK1 NA AC012158.1 NA Kinase, Kinase NA NA NA NA -TBK1--C12orf56 BS_SD8YBRBR 3.93417984819648 2.39513441101462 NA NA differentially expressed differentially expressed NA NA 12:64490119 12:64350442 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_INVERSION:+:-:[60688]],duplication/5'-5' TBK1 NA C12orf56 NA Kinase, Kinase NA NA NA NA -TBL1X--GPR143 BS_M0QYNVK8 1.69908281630768 -1.59580369656726 NA NA no change no change NA NA X:9501849 X:9760826 ARRIBA other 2 1 high [ChimerSeq,INTRACHROMOSOMAL[chrX:0.01Mb],LOCAL_INVERSION:+:-:[5603]],inversion TBL1X NA GPR143 NA NA NA NA NA TCGAFusion -TBL1XR1--CCDC191 BS_FAQQ0GCQ 2.88249375295287 NA NA NA differentially expressed NA NA NA 3:177197121 3:113980793 ARRIBA other 12 0 high [INTRACHROMOSOMAL[chr3:62.96Mb]],deletion TBL1XR1 NA CCDC191 NA CosmicCensus NA NA NA NA -TBL1XR1--CCDC191 BS_FAQQ0GCQ 2.88249375295287 NA NA NA differentially expressed NA NA NA 3:177131363 3:113980793 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:62.96Mb]],deletion TBL1XR1 NA CCDC191 NA CosmicCensus NA NA NA NA -TBL1XR1--CCDC191 BS_FAQQ0GCQ 2.88249375295287 NA NA NA differentially expressed NA NA NA 3:177196340 3:113980793 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:62.96Mb]],deletion TBL1XR1 NA CCDC191 NA CosmicCensus NA NA NA NA -TCAF1--CUX1 BS_WH8G4VFB -0.367047876924794 0.591245833292167 NA NA no change no change NA NA 7:143875989 7:102178469 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:41.57Mb]],inversion TCAF1 NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -TCAF1--PTPRZ1 BS_51RA1PGE -0.160074070574306 3.14231379372546 NA NA no change differentially expressed NA NA 7:143901961 7:121928156 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:21.79Mb]],inversion TCAF1 NA PTPRZ1 NA NA NA NA NA NA -TCERG1L--TCERG1L BS_2AR3AP0N 0.0138963841315848 0.0138963841315848 NA NA no change no change NA NA 10:131260259 10:131309299 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA -TCERG1L--TCERG1L BS_AMZ70B6F 4.75073108296331 4.75073108296331 NA NA differentially expressed differentially expressed NA NA 10:131260259 10:131309299 ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA -TCERG1L--TCERG1L BS_CW9QV8AG 0.615649247406135 0.615649247406135 NA NA no change no change NA NA 10:131260259 10:131309299 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA -TCERG1L--TCERG1L BS_DVCQ8XDZ 0.745103610936072 0.745103610936072 NA NA no change no change NA NA 10:131260259 10:131309299 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA -TCERG1L--TCERG1L BS_M1PVEHCM 1.41436839761527 1.41436839761527 NA NA no change no change NA NA 10:131260259 10:131309299 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA -TCERG1L--TCERG1L BS_M4NVX721 0.668778341338328 0.668778341338328 NA NA no change no change NA NA 10:131260259 10:131309299 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA -TCERG1L--TCERG1L BS_QXKRN6CR 2.45724669022089 2.45724669022089 NA NA differentially expressed differentially expressed NA NA 10:131260259 10:131309299 ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA -TCERG1L--TCERG1L BS_XJTW0P8P 1.1263898544127 1.1263898544127 NA NA no change no change NA NA 10:131260259 10:131309299 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA -TCERG1L--TCERG1L BS_ZR96A4FH 0.24427479647358 0.24427479647358 NA NA no change no change NA NA 10:131260259 10:131309299 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA -TCF12--ALDH1A2 BS_7327SDAQ 5.23372520620468 1.3177321080697 NA NA differentially expressed no change NA NA 15:57091891 15:58013520 ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr15:0.65Mb]],deletion/5'-5' TCF12 NA ALDH1A2 NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene NA NA NA -TCF12--POLR2M BS_7327SDAQ 5.23372520620468 -0.011471136949151 NA NA differentially expressed no change NA NA 15:57091891 15:57774934 ARRIBA frameshift 9 2 high [INTRACHROMOSOMAL[chr15:0.41Mb]],deletion TCF12 NA POLR2M NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -TCF12--POLR2M BS_7327SDAQ 5.23372520620468 -0.011471136949151 NA NA differentially expressed no change NA NA 15:57091891 15:57777595 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:0.41Mb]],deletion TCF12 NA POLR2M NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -TCF20--AC025187.1(79657)/LINC02063(14261) BS_QWTE1CWR 2.07729509465173 NA NA NA differentially expressed NA NA NA 22:42179609 5:4121421 ARRIBA frameshift 10 1 high [],translocation TCF20 NA AC025187.1 LINC02063 TranscriptionFactor NA NA NA NA -TCF20--LINC02063 BS_QWTE1CWR 2.07729509465173 NA NA NA differentially expressed NA NA NA 22:42179609 5:4143247 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr22--chr5]],translocation TCF20 NA LINC02063 NA TranscriptionFactor NA NA NA NA -TCF4--RPL17P45(693688)/KC6(627591) BS_S6S7SK3P 4.10319235869528 -0.0294627825494395 NA -0.550632402877963 differentially expressed no change NA no change 18:55350359 18:40838192 ARRIBA frameshift 37 3 high [],deletion TCF4 NA RPL17P45 KC6 TumorSuppressorGene, TranscriptionFactor NA NA NA NA -TCF4--TCP10 BS_5CTVXVRX 0.913483159089131 13.1684842011353 NA NA no change differentially expressed NA NA 18:55403454 6:167359412 ARRIBA in-frame 7 0 medium [INTERCHROMOSOMAL[chr18--chr6]],translocation TCF4 NA TCP10 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA -TCF4--TCP10 BS_5CTVXVRX 0.913483159089131 13.1684842011353 NA NA no change differentially expressed NA NA 18:55401689 6:167359412 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr18--chr6]],translocation TCF4 NA TCP10 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA -TCF4--TCP10 BS_8ZS9F31R 0.154747989030989 19.8108198850542 NA NA no change differentially expressed NA NA 18:55403454 6:167359412 ARRIBA in-frame 5 0 medium [INTERCHROMOSOMAL[chr18--chr6]],translocation TCF4 NA TCP10 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA -TDG--TMEM132B BS_044XZ8ST 0.146856393443637 3.12775929892385 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_06AMMCXR 0.628170013231072 4.69148276926124 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_0C7VZC0A 0.220891273416323 4.09250295370502 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_1021ZGQT 1.37807702550141 4.98702870806948 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_1RXZ3BP7 0.378443778309753 4.93731991858046 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_1TWCV047 2.94231208171029 4.32589046851727 NA NA differentially expressed differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_2A5R9MEJ 1.01125753552149 4.20426190039986 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_2HN96129 0.851628893839196 3.44803867735191 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_3NWQXPQV 2.09262503852443 3.71947538039117 NA NA differentially expressed differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_3P20Q2C3 0.362535700908759 4.08340508180512 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_4PH1MBGR 1.87698001573343 4.07406817784218 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 8 3 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_6DCSD5Y6 0.241051557767593 3.58224634024789 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_8RCR7Y4B 0.470863821702366 4.51816369745628 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 3 3 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_8SKZ7BRN 0.078903313527488 4.28938921951996 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_97M1E2DW 0.646277502109192 3.83818993653465 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_9PB3XH5D 2.29314453536224 2.09861925408912 NA NA differentially expressed differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_A87NPZAP 1.47032201720973 3.35412676972555 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 5 2 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_B7QS4DHK 0.10082322458145 2.10370621086962 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_BB0YW800 -0.15393509270553 1.92123172393761 NA NA no change no change NA NA 12:103965852 12:125316602 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_DV86M0Y7 0.131651207476631 2.71589032030661 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_E3BAT4C1 1.90709231053693 3.32475399776835 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 6 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_E94QRJDW 0.63724806314111 5.51024493309816 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 9 2 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_ERWT0ZWE 1.49907717415479 2.00300103192547 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_FQX1PRAJ 0.412404907743125 2.72339948626001 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_G00FHF3Q 1.75551797972554 4.78420039571079 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 10 2 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_GE2RVZE6 1.91983476687694 4.8263130168 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 6 3 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_J8G4SH4Z 2.26665625082443 3.97772292019472 NA NA differentially expressed differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 9 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_KN92S7YQ 1.50990381615057 3.76480453510846 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_KPT2WPHW 0.0374231366631068 3.89288295015718 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_M8M56Z4Y -0.0658145370851893 4.42177358251531 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_NNPEC7W1 -0.301315525145187 3.13057010126861 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_NS7GSHB9 0.478341633061582 4.63809324550445 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_NZ71XCG3 1.99433126545853 3.73260822843867 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_QB7YGKN1 0.655258847965291 4.12641197508085 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_QRDT19KS 1.59794744158667 4.97583605085853 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 21 4 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_QV51J756 -0.432670955478979 3.18766828440155 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_SKGJ5SY9 3.39758639074482 5.98151796630068 NA NA differentially expressed differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 13 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_TCGEZJ5F 0.351846323128168 3.71297922286807 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_TYKJ8G2G 0.078903313527488 2.95952343000546 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_TZ5D0A7R 1.36636695275999 2.50245839035718 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_VA5T4KAA 2.90321071810667 2.14587028882196 NA NA differentially expressed differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_VVFBW0YH 2.34983033347287 2.93071152059996 NA NA differentially expressed differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_W9AT0MR7 1.88563853898406 3.5572870798729 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_WH8G4VFB 0.757355001808618 1.80787089331138 NA NA no change no change NA NA 12:103965852 12:125316602 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_ZV68CES9 2.97261325847401 4.95453557709768 NA NA differentially expressed differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 17 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_ZV9Z3SY6 -0.0250984254144195 4.60035371549933 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDG--TMEM132B BS_ZZPBANDD 0.346476115729136 4.1489733825229 NA NA no change differentially expressed NA NA 12:103965852 12:125316602 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDRD3--CGNL1 BS_6WP1FHTE 0.0437175485454109 2.03790879216944 NA NA no change differentially expressed NA NA 13:60494575 15:57523489 ARRIBA in-frame 12 0 high [INTERCHROMOSOMAL[chr13--chr15]],translocation TDRD3 NA CGNL1 NA NA NA NA NA NA -TDRD3--CGNL1 BS_6WP1FHTE 0.0437175485454109 2.03790879216944 NA NA no change differentially expressed NA NA 13:60485948 15:57523489 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr13--chr15]],translocation TDRD3 NA CGNL1 NA NA NA NA NA NA -TDRD3--CGNL1 BS_E60JZ9Z3 2.74822844681176 0.465342442997966 NA NA differentially expressed no change NA NA 13:60494575 15:57523489 ARRIBA in-frame 41 1 high [INTERCHROMOSOMAL[chr13--chr15]],translocation TDRD3 NA CGNL1 NA NA NA NA NA NA -TEAD1--SERGEF BS_3DCBDJAT 3.37166679718149 -2.61752963021385 NA NA differentially expressed differentially expressed NA NA 11:12675561 11:17929383 ARRIBA other 9 0 high [INTRACHROMOSOMAL[chr11:4.84Mb]],deletion/5'-5' TEAD1 NA SERGEF NA TranscriptionFactor NA NA NA NA -TEF(15185)/AL008582.1(16423)--CCDC134 BS_1HQ76V6D -1.71246996742266 2.18836578058005 NA NA no change differentially expressed NA NA 22:41414511 22:41825698 ARRIBA other 7 0 high [],deletion TEF AL008582.1 CCDC134 NA TranscriptionFactor NA NA NA NA -TENM1--TENM1 BS_7Z93ZYMS 0.509704322037679 0.509704322037679 NA NA no change no change NA NA X:124453337 X:124487229 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.59Mb]],duplication/non-canonical_splicing TENM1 NA TENM1 NA NA NA NA NA NA -TENM3--LINC02436 BS_C6ZZ3FY5 3.99232720922156 NA NA NA differentially expressed NA NA NA 4:182714233 4:185054979 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr4:2.25Mb]],deletion TENM3 NA LINC02436 NA NA NA NA NA NA -TENM3--LINC02436 BS_C6ZZ3FY5 3.99232720922156 NA NA NA differentially expressed NA NA NA 4:182714233 4:185071568 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr4:2.25Mb]],deletion TENM3 NA LINC02436 NA NA NA NA NA NA -TENM3--LINC02436 BS_C6ZZ3FY5 3.99232720922156 NA NA NA differentially expressed NA NA NA 4:182714233 4:185069930 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr4:2.25Mb]],deletion TENM3 NA LINC02436 NA NA NA NA NA NA -TENM4--BBS9 BS_6VPKXXMR 3.7441729091392 3.29318613030983 NA NA differentially expressed differentially expressed NA NA 11:79148710 7:33604865 ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr11--chr7]],translocation TENM4 NA BBS9 NA NA NA NA NA NA -TERT(1091)/MIR4457(13150)--AL132656.4 BS_61E80SD6 10.8164926905069 NA NA NA differentially expressed NA NA NA 5:1296160 10:79683040 ARRIBA other 9 4 medium [],translocation TERT MIR4457 AL132656.4 NA CosmicCensus, Oncogene, Oncogene NA NA NA NA -TERT(927)/MIR4457(13314)--LHFPL2 BS_6JHXXVR7 20.6912221110985 5.89175889039359 NA NA differentially expressed differentially expressed NA NA 5:1295996 5:78510090 ARRIBA other 302 45 high [],deletion TERT MIR4457 LHFPL2 NA CosmicCensus, Oncogene, Oncogene NA NA NA NA -TET2--PPA2 BS_11WY983P 7.80385081179977 0.298449619832602 NA NA differentially expressed no change NA NA 4:105146979 4:105456745 ARRIBA other 1 0 low [CCLE,GTEx,INTRACHROMOSOMAL[chr4:0.09Mb],LOCAL_INVERSION:+:-:[89261]],inversion TET2 NA PPA2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -TET3--AC073046.1 BS_1EBQ3T20 4.56853237651384 NA NA NA differentially expressed NA NA NA 2:74093666 2:73985980 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[61]],duplication TET3 NA AC073046.1 NA TranscriptionFactor NA NA NA NA -TET3--AC073046.1 BS_1EBQ3T20 4.56853237651384 NA NA NA differentially expressed NA NA NA 2:74080591 2:73985980 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[61]],duplication TET3 NA AC073046.1 NA TranscriptionFactor NA NA NA NA -TET3--AC073046.1 BS_1EBQ3T20 4.56853237651384 NA NA NA differentially expressed NA NA NA 2:74073639 2:73985980 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[61]],duplication TET3 NA AC073046.1 NA TranscriptionFactor NA NA NA NA -TET3--AC073046.1 BS_8ZD6J47V 3.72148274584148 NA NA NA differentially expressed NA NA NA 2:74080591 2:73985980 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[61]],duplication TET3 NA AC073046.1 NA TranscriptionFactor NA NA NA NA -TET3--AC073046.1 BS_8ZD6J47V 3.72148274584148 NA NA NA differentially expressed NA NA NA 2:74090047 2:73985980 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[61]],duplication TET3 NA AC073046.1 NA TranscriptionFactor NA NA NA NA -TET3--AC073046.1 BS_8ZD6J47V 3.72148274584148 NA NA NA differentially expressed NA NA NA 2:74073639 2:73985980 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[61]],duplication TET3 NA AC073046.1 NA TranscriptionFactor NA NA NA NA -TEX10--SEMA3E BS_QB84TBA3 2.53428805760177 9.77206818698076 NA NA differentially expressed differentially expressed NA NA 9:100352772 7:83490274 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr9--chr7]],translocation TEX10 NA SEMA3E NA NA NA NA NA NA -TEX11--NONO BS_WSQMAA33 44.7839891124191 3.15147350034207 NA NA differentially expressed differentially expressed NA NA X:70907753 X:71297377 ARRIBA in-frame 12 3 medium [INTRACHROMOSOMAL[chrX:0.37Mb]],inversion TEX11 NA NONO NA NA CosmicCensus, Oncogene NA NA NA -TEX29--ARHGEF7 BS_G63HYD6N -1.52564269433055 -0.610227844565263 NA NA no change no change NA NA 13:111316257 13:111283139 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr13:0.01Mb],LOCAL_REARRANGEMENT:+:[10447]],duplication TEX29 NA ARHGEF7 NA NA NA NA NA NA -TEX41--TEX41 BS_7BTZQKYY 4.73399333341475 4.73399333341475 NA NA differentially expressed differentially expressed NA NA 2:145017611 2:145016368 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.60Mb]],duplication/non-canonical_splicing TEX41 NA TEX41 NA NA NA NA NA NA -TEX9--TEX9 BS_03FT4S8B 3.02980561797951 3.02980561797951 NA NA differentially expressed differentially expressed NA NA 15:56394834 15:56389318 ARRIBA in-frame 20 6 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.20Mb]],duplication/non-canonical_splicing TEX9 NA TEX9 NA NA NA NA NA NA -TEX9--TEX9 BS_7Z93ZYMS 1.09555331237888 1.09555331237888 NA NA no change no change NA NA 15:56394834 15:56389318 ARRIBA in-frame 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.20Mb]],duplication/non-canonical_splicing TEX9 NA TEX9 NA NA NA NA NA NA -TEX9--TEX9 BS_RD4D5F9F 2.71448172249678 2.71448172249678 NA NA differentially expressed differentially expressed NA NA 15:56412436 15:56389318 ARRIBA in-frame 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.20Mb]],duplication/non-canonical_splicing TEX9 NA TEX9 NA NA NA NA NA NA -TFAP4(30236)/GLIS2(11450)--SH3GLB2 BS_EJ9JKM1C 0.809297028668144 -2.40263579013108 2.06721869056531 NA no change differentially expressed differentially expressed NA 16:4303311 9:129022423 ARRIBA other 1 1 high [],translocation TFAP4 GLIS2 SH3GLB2 NA Oncogene, TranscriptionFactor NA TranscriptionFactor NA NA -TFAP4(30236)/GLIS2(11450)--SH3GLB2 BS_YB07VF1X 0.894124524781412 -2.56726215745642 1.86214052016748 NA no change differentially expressed no change NA 16:4303311 9:129022423 ARRIBA other 1 1 high [],translocation TFAP4 GLIS2 SH3GLB2 NA Oncogene, TranscriptionFactor NA TranscriptionFactor NA NA -TFAP4(34382)/GLIS2(7304)--SH3GLB2 BS_DBDXCXT5 0.170591267335202 -0.988551480074606 1.21176842039495 NA no change no change no change NA 16:4307457 9:129022423 ARRIBA other 4 0 medium [],translocation TFAP4 GLIS2 SH3GLB2 NA Oncogene, TranscriptionFactor NA TranscriptionFactor NA NA -TFB2M--CNST BS_EMYET8F4 1.16129316206444 0.473851774904863 NA NA no change no change NA NA 1:246564346 1:246568130 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_INVERSION:-:+:[120]],duplication/5'-5' TFB2M NA CNST NA NA NA NA NA NA -TFB2M--CNST BS_M4NVX721 0.885537125888927 0.670622108567696 NA NA no change no change NA NA 1:246564346 1:246568130 ARRIBA frameshift 12 1 high [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_INVERSION:-:+:[120]],duplication/5'-5' TFB2M NA CNST NA NA NA NA NA NA -TFCP2--TMPRSS12 BS_8NY9J9NQ -1.1560875461209 3.65967508482564 NA NA no change differentially expressed NA NA 12:51172301 12:50843842 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr12:0.21Mb]],inversion TFCP2 NA TMPRSS12 NA TranscriptionFactor NA NA NA NA -TFCP2--TMPRSS12 BS_8NY9J9NQ -1.1560875461209 3.65967508482564 NA NA no change differentially expressed NA NA 12:51172301 12:50858785 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:0.21Mb]],inversion TFCP2 NA TMPRSS12 NA TranscriptionFactor NA NA NA NA -TFDP1--FAM122C BS_MV6ASWV9 2.38164765082892 2.46222164258228 NA NA differentially expressed differentially expressed NA NA 13:113611062 X:134804101 ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr13--chrX]],translocation TFDP1 NA FAM122C NA TranscriptionFactor NA NA NA NA -TFDP1--PLAC1 BS_MV6ASWV9 2.38164765082892 4.41932491548367 NA NA differentially expressed differentially expressed NA NA 13:113611062 X:134696457 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr13--chrX]],translocation/5'-5' TFDP1 NA PLAC1 NA TranscriptionFactor NA NA NA NA -TFDP2--PDS5A BS_THSPSG2Z 2.83833726746674 1.54784728425386 NA NA differentially expressed no change NA NA 3:141945469 4:39924255 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr3--chr4]],translocation TFDP2 NA PDS5A NA TranscriptionFactor NA NA NA NA -TFDP2--TFDP2 BS_8F9BDWY4 2.7496507975335 2.7496507975335 NA NA differentially expressed differentially expressed NA NA 3:141959674 3:142093127 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.21Mb]],duplication/non-canonical_splicing TFDP2 NA TFDP2 NA TranscriptionFactor TranscriptionFactor NA NA NA -TFE3--AC245047.7(7453)/SSX5(744) BS_8GW1TMV2 2.9508181612491 NA NA -0.0528873665361719 differentially expressed NA NA no change X:49033465 X:48185476 ARRIBA frameshift 3 0 medium [],inversion TFE3 NA AC245047.7 SSX5 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -TFRC--LINC00969 BS_H4NXBD2D 2.53681303552133 0.225556345978515 NA NA differentially expressed no change NA NA 3:196053418 3:195708134 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr3:0.29Mb]],inversion TFRC NA LINC00969 NA CosmicCensus, Oncogene NA NA NA NA -TGFBR3--LPCAT2BP BS_SXRS2P6T 3.4412276777406 -0.101474974285067 NA NA differentially expressed no change NA NA 1:91861471 1:92066521 ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr1:0.16Mb]],duplication/5'-5' TGFBR3 NA LPCAT2BP NA TumorSuppressorGene, Oncogene NA NA NA NA -TGFBR3--SETSIP BS_SXRS2P6T 3.4412276777406 12.9953082376413 NA NA differentially expressed differentially expressed NA NA 1:91861471 1:92075487 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr1:0.17Mb]],duplication TGFBR3 NA SETSIP NA TumorSuppressorGene, Oncogene NA NA NA NA -TGFBR3L--MAP2K7 BS_DGTPWJ59 2.41118582594646 1.0968287934528 NA NA differentially expressed no change NA NA 19:7917859 19:7911250 ARRIBA frameshift 16 0 high [INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:+:[1667]],duplication TGFBR3L NA MAP2K7 NA NA Kinase, Kinase NA NA NA -THADA--AL445687.2(47597)/RNU6-716P(51260) BS_FCAKKZ20 1.4006058455854 NA NA NA no change NA NA NA 2:43581741 1:199957245 ARRIBA frameshift 4 0 medium [],translocation THADA NA AL445687.2 RNU6-716P Oncogene NA NA NA NA -THADA--THADA BS_6H1C1ME9 1.17741961592589 1.17741961592589 NA NA no change no change NA NA 2:43397971 2:43527988 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.37Mb]],duplication/non-canonical_splicing THADA NA THADA NA Oncogene Oncogene NA NA NA -THADA--THADA BS_DMZP9G1H -0.712018422422327 -0.712018422422327 NA NA no change no change NA NA 2:43397971 2:43527988 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.37Mb]],duplication/non-canonical_splicing THADA NA THADA NA Oncogene Oncogene NA NA NA -THADA--THADA BS_PZVHMSYN 0.394332532839374 0.394332532839374 NA NA no change no change NA NA 2:43397971 2:43527988 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.37Mb]],duplication/non-canonical_splicing THADA NA THADA NA Oncogene Oncogene NA NA NA -THADA--THADA BS_RHD7XPNP 1.95123105613062 1.95123105613062 NA NA no change no change NA NA 2:43397971 2:43527988 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.37Mb]],duplication/non-canonical_splicing THADA NA THADA NA Oncogene Oncogene NA NA NA -THBS1--FSIP1 BS_7BTZQKYY 2.6559151084955 11.5139303543099 NA NA differentially expressed differentially expressed NA NA 15:39587321 15:39741900 ARRIBA other 4 0 medium [ChimerSeq,INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_INVERSION:+:-:[565]],duplication/3'-3' THBS1 NA FSIP1 NA TumorSuppressorGene, Oncogene NA NA NA NA -THSD1--VPS36 BS_AKRHBPNZ 2.70812925172177 0.468678831120178 NA NA differentially expressed no change NA NA 13:52397232 13:52427219 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr13:0.01Mb],LOCAL_REARRANGEMENT:-:[6108]],duplication THSD1 NA VPS36 NA TumorSuppressorGene NA NA NA NA -THSD7A(262455)/TMEM106B(116588)--PRKAR1B BS_S6S7SK3P 6.78660473851714 -1.96514504084535 6.53792687586972 NA differentially expressed no change differentially expressed NA 7:12094653 7:551470 ARRIBA other 2 0 medium [],deletion THSD7A TMEM106B PRKAR1B NA NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_0WVJYM9R -1.14354221237373 -0.349781155242714 NA -1.14354221237373 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 5 1 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_0Y66ZBWE -0.0838024981154974 -0.0664012264106926 NA -0.0838024981154974 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 9 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_13CGKADW -0.501494666262091 -0.685877207668977 NA -0.501494666262091 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 4 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_258RRGDM -1.07250163133543 -0.790814559516648 NA -1.07250163133543 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 3 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_470DYRJQ -0.597100659802208 -0.584375847596563 NA -0.597100659802208 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 10 1 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_52426AMF -0.862061056855943 -0.908070858293436 NA -0.862061056855943 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 5 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_5PEFNDCY -0.639190822600549 -0.866505634660608 NA -0.639190822600549 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 12 1 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_68BW2163 -0.526720952270289 -1.36786803519448 NA -0.526720952270289 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 3 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_7FWZ518S 1.0250365728119 -0.319247997782116 NA 1.0250365728119 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 9 3 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_90B22NGP -0.221285235519046 0.873681606446207 NA -0.221285235519046 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 8 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_AKRHBPNZ -1.20683838063929 -1.1773879218779 NA -1.20683838063929 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 3 1 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_DMZP9G1H -1.20683838063929 -0.779001782886913 NA -1.20683838063929 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 3 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_ET8CJXSF -1.2284608104637 -0.845514466548815 NA -1.2284608104637 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 6 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_FEPRNEXX 0.573198590427987 0.397092556778866 NA 0.573198590427987 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 25 2 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_G9XE3N9T -0.552319399207601 -0.0567198026001219 NA -0.552319399207601 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 8 1 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_GCA4GET3 -0.367291188303726 -0.741640749642066 NA -0.367291188303726 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 3 1 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_GG9W3J9Y -0.497920663886322 -1.16254412550463 NA -0.497920663886322 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 3 1 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_GS1KR5PK 0.430775986946518 -0.525158124085919 NA 0.430775986946518 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 14 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_GYA4V1RD -0.920278925381694 -0.488537401055042 NA -0.920278925381694 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 5 2 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_H3FE3TH9 -0.751176614941903 -1.44231128221377 NA -0.751176614941903 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 4 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_M7HCF7DW -0.417687108297735 -0.499861636390639 NA -0.417687108297735 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 3 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_ME3HKN2C -0.0175873718315182 -0.0589884925737671 NA -0.0175873718315182 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 6 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_N6NE6B3W 0.386308967392597 0.44391300498617 NA 0.386308967392597 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 45 3 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_QEYPFYHD -0.0809924933880534 -0.291177065733995 NA -0.0809924933880534 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 14 2 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_S69QZAJR -0.635321974754777 -0.278304876471131 NA -0.635321974754777 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 4 1 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_SFKZSJN1 -0.533996340454968 -0.193423474059144 NA -0.533996340454968 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 10 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_T2QPMZCM -0.902156802016927 0.147773848693659 NA -0.902156802016927 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 4 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_TG93XC55 -1.61022356884358 -0.640514501700167 NA -1.61022356884358 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 3 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_VMMJYN8Z -1.04781874656496 -1.09592214470064 NA -1.04781874656496 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 3 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_Y7F9E2E9 -1.09754070276271 -0.0116012919548379 NA -1.09754070276271 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 6 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_ZRM0W01M 0.184078007256567 0.227201481842124 NA 0.184078007256567 no change no change NA no change 2:39752380 2:39735229 ARRIBA other 13 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA -TIAL1--RNU6ATAC11P(8323)/FXYD4(21409) BS_84XCR9GG -0.167049674209364 NA NA 0.330394127161535 no change NA NA no change 10:119596434 10:43350233 ARRIBA frameshift 7 0 medium [],inversion TIAL1 NA RNU6ATAC11P FXYD4 NA NA NA NA NA -TICRR--ERG BS_4B0BAVTX 15.9447665119334 0.252323759115303 NA NA differentially expressed no change NA NA 15:89619842 21:38441018 ARRIBA frameshift 7 0 high [INTERCHROMOSOMAL[chr15--chr21]],translocation/5'-5' TICRR NA ERG NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -TIGAR--AC125807.2(13316)/AC125807.1(13266) BS_B1C6GZ84 5.22096382217745 NA NA NA differentially expressed NA NA NA 12:4337160 12:3058266 ARRIBA frameshift 99 8 high [],inversion TIGAR NA AC125807.2 AC125807.1 NA NA NA NA NA -TIGAR--AL451164.1 BS_A0DYVX9J 4.80990644727595 NA NA NA differentially expressed NA NA NA 12:4331317 10:3256557 ARRIBA frameshift 17 1 high [INTERCHROMOSOMAL[chr12--chr10]],translocation TIGAR NA AL451164.1 NA NA NA NA NA NA -TIGAR--AL451164.1 BS_A0DYVX9J 4.80990644727595 NA NA NA differentially expressed NA NA NA 12:4331317 10:3244659 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr12--chr10]],translocation TIGAR NA AL451164.1 NA NA NA NA NA NA -TIGAR--AL451164.1 BS_A0DYVX9J 4.80990644727595 NA NA NA differentially expressed NA NA NA 12:4331317 10:3240502 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr10]],translocation TIGAR NA AL451164.1 NA NA NA NA NA NA -TIGAR--AL451164.1(2360)/AL139280.1(6433) BS_A0DYVX9J 4.80990644727595 NA NA NA differentially expressed NA NA NA 12:4334846 10:3259570 ARRIBA other 46 8 medium [],translocation TIGAR NA AL451164.1 AL139280.1 NA NA NA NA NA -TIMM10B--LMO2(87951)/CAPRIN1(71443) BS_49FQXT2E 1.07376051290028 1.61593174667929 NA 1.423286247545 no change no change NA no change 11:6481852 11:33980240 ARRIBA frameshift 4 0 medium [],inversion TIMM10B NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA -TIMM23--RNU6-889P(243)/AL441943.2(67820) BS_84XCR9GG -0.634466592310837 NA NA NA no change NA NA NA 10:45988847 10:2098512 ARRIBA frameshift 3 0 medium [],inversion TIMM23 NA RNU6-889P AL441943.2 NA NA NA NA NA -TLE3--LINC01579 BS_3MS8WVNR 1.38841067712933 3.60687944351258 NA NA no change differentially expressed NA NA 15:70094532 15:94030401 ARRIBA frameshift 6 4 high [INTRACHROMOSOMAL[chr15:23.62Mb]],duplication TLE3 NA LINC01579 NA NA NA NA NA NA -TLE3--LINC01579 BS_3MS8WVNR 1.38841067712933 3.60687944351258 NA NA no change differentially expressed NA NA 15:70094532 15:94066879 ARRIBA frameshift 2 4 high [INTRACHROMOSOMAL[chr15:23.62Mb]],duplication TLE3 NA LINC01579 NA NA NA NA NA NA -TLE3--LINC01579 BS_3MS8WVNR 1.38841067712933 3.60687944351258 NA NA no change differentially expressed NA NA 15:70094532 15:93867044 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr15:23.62Mb]],duplication TLE3 NA LINC01579 NA NA NA NA NA NA -TLE3--LINC01579 BS_8MA5B8Y9 2.37838075694069 0.993308085503462 NA NA differentially expressed no change NA NA 15:70094532 15:94030401 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr15:23.62Mb]],duplication TLE3 NA LINC01579 NA NA NA NA NA NA -TLE3--LINC01579 BS_8MA5B8Y9 2.37838075694069 0.993308085503462 NA NA differentially expressed no change NA NA 15:70094532 15:93867044 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:23.62Mb]],duplication TLE3 NA LINC01579 NA NA NA NA NA NA -TLL1--TLL1 BS_8F9BDWY4 0.991398332052415 0.991398332052415 NA NA no change no change NA NA 4:166065863 4:165989381 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing TLL1 NA TLL1 NA NA NA NA NA NA -TLN1--SERPINH1 BS_GXTFW99H 5.23289800448485 3.69660524915459 NA NA differentially expressed differentially expressed NA NA 9:35707072 11:75566316 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr9--chr11]],translocation TLN1 NA SERPINH1 NA NA NA NA NA NA -TM7SF2--SULT2A1(23264)/BSPH1(58385) BS_C05FKR8X 2.7676772894068 -0.211005493516627 NA -0.40846886622313 differentially expressed no change NA no change 11:65112701 19:47909661 ARRIBA frameshift 1 2 medium [],translocation TM7SF2 NA SULT2A1 BSPH1 NA NA NA NA NA -TM7SF2--SULT2A1(39356)/BSPH1(42293) BS_C05FKR8X 2.7676772894068 -0.211005493516627 NA -0.40846886622313 differentially expressed no change NA no change 11:65112701 19:47925753 ARRIBA frameshift 9 0 low [],translocation TM7SF2 NA SULT2A1 BSPH1 NA NA NA NA NA -TM7SF3--LINC02443(27054)/AC006206.2(20275) BS_49FQXT2E 5.43841647096597 NA NA NA differentially expressed NA NA NA 12:26995237 12:5270205 ARRIBA frameshift 3 0 medium [],inversion TM7SF3 NA LINC02443 AC006206.2 NA NA NA NA NA -TMC1--TMC1 BS_34201DKZ 3.46919461880757 3.46919461880757 NA NA differentially expressed differentially expressed NA NA 9:72805510 9:72742444 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.31Mb]],duplication/non-canonical_splicing TMC1 NA TMC1 NA NA NA NA NA NA -TMC1--TMC1 BS_5PEFNDCY 3.08433868664915 3.08433868664915 NA NA differentially expressed differentially expressed NA NA 9:72805510 9:72742444 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.31Mb]],duplication/non-canonical_splicing TMC1 NA TMC1 NA NA NA NA NA NA -TMC7--DAW1 BS_H0QWRJE2 -1.35204477778738 3.72986367775454 NA NA no change differentially expressed NA NA 16:18996579 2:227911826 ARRIBA other 14 2 medium [INTERCHROMOSOMAL[chr16--chr2]],translocation/3'-3' TMC7 NA DAW1 NA NA NA NA NA NA -TMC7--DAW1 BS_TJTEF70D -1.70843256131577 0.726954556642898 NA NA no change no change NA NA 16:18996579 2:227911826 ARRIBA other 7 8 medium [INTERCHROMOSOMAL[chr16--chr2]],translocation/3'-3' TMC7 NA DAW1 NA NA NA NA NA NA -TMEFF1--PLPP7(60243)/PRRC2B(24588) BS_A0DYVX9J 4.38822269207864 NA NA 5.11313374374537 differentially expressed NA NA differentially expressed 9:100550160 9:131369505 ARRIBA frameshift 3 1 high [],deletion TMEFF1 NA PLPP7 PRRC2B TumorSuppressorGene NA NA NA NA -TMEFF1--PRRC2B BS_A0DYVX9J 4.38822269207864 5.11313374374537 NA NA differentially expressed differentially expressed NA NA 9:100550160 9:131430090 ARRIBA frameshift 126 23 high [INTRACHROMOSOMAL[chr9:30.82Mb]],deletion TMEFF1 NA PRRC2B NA TumorSuppressorGene NA NA NA NA -TMEFF1--PRRC2B BS_A0DYVX9J 4.38822269207864 5.11313374374537 NA NA differentially expressed differentially expressed NA NA 9:100550160 9:131432617 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr9:30.82Mb]],deletion TMEFF1 NA PRRC2B NA TumorSuppressorGene NA NA NA NA -TMEFF1--PRRC2B BS_A0DYVX9J 4.38822269207864 5.11313374374537 NA NA differentially expressed differentially expressed NA NA 9:100509134 9:131432617 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:30.82Mb]],deletion TMEFF1 NA PRRC2B NA TumorSuppressorGene NA NA NA NA -TMEFF1--PRRC2B BS_A0DYVX9J 4.38822269207864 5.11313374374537 NA NA differentially expressed differentially expressed NA NA 9:100473740 9:131430090 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:30.82Mb]],deletion TMEFF1 NA PRRC2B NA TumorSuppressorGene NA NA NA NA -TMEFF1--RPSAP49(56693)/SPIN1(6387) BS_BKQZ550R -0.687058892276533 NA NA 0.246782123687613 no change NA NA no change 9:100498874 9:88382032 ARRIBA frameshift 2 0 high [],duplication TMEFF1 NA RPSAP49 SPIN1 TumorSuppressorGene NA NA NA NA -TMEM108--EPHA6 BS_FAQQ0GCQ 0.71676373379582 -1.02518079891601 NA NA no change no change NA NA 3:133046020 3:97016037 ARRIBA other 8 0 high [INTRACHROMOSOMAL[chr3:35.29Mb]],inversion/3'-3' TMEM108 NA EPHA6 NA NA Kinase, Kinase NA NA NA -TMEM110--CHCHD6 BS_FAQQ0GCQ 1.60137956486307 -1.77042071265281 NA NA no change no change NA NA 3:52842811 3:126852647 ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr3:73.81Mb]],inversion TMEM110 NA CHCHD6 NA NA NA NA NA NA -TMEM110-MUSTN1--CHCHD6 BS_FAQQ0GCQ -0.856206499352016 -1.77042071265281 NA NA no change no change NA NA 3:52842811 3:126852647 ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr3:73.81Mb]],inversion TMEM110-MUSTN1 NA CHCHD6 NA NA NA NA NA NA -TMEM120B--AC073387.2(90358)/EIF3IP1(104503) BS_09Z7TC35 -0.516415112061337 -0.0570356705829783 NA 16.3457337850959 no change no change NA differentially expressed 12:121712958 7:109854715 ARRIBA frameshift 7 1 medium [],translocation TMEM120B NA AC073387.2 EIF3IP1 NA NA NA NA NA -TMEM131--MALL BS_6JHXXVR7 2.72371155900984 1.88351829386043 NA NA differentially expressed no change NA NA 2:97995476 2:110091770 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr2:12.09Mb]],duplication TMEM131 NA MALL NA NA NA NA NA NA -TMEM131--NPHP1 BS_6JHXXVR7 2.72371155900984 1.00224753258771 NA NA differentially expressed no change NA NA 2:97995476 2:110125681 ARRIBA frameshift 58 10 high [INTRACHROMOSOMAL[chr2:12.13Mb]],duplication TMEM131 NA NPHP1 NA NA NA NA NA NA -TMEM131L--AC004944.1(103408)/AC084768.1(47145) BS_T1YHK6B7 NA NA NA NA NA NA NA NA 4:153550141 8:5612534 ARRIBA frameshift 5 0 high [],translocation TMEM131L NA AC004944.1 AC084768.1 NA NA NA NA NA -TMEM132B--TDG BS_0C7VZC0A 4.09250295370502 0.220891273416323 NA NA differentially expressed no change NA NA 12:125186866 12:103987050 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA -TMEM132B--TDG BS_2A5R9MEJ 4.20426190039986 1.01125753552149 NA NA differentially expressed no change NA NA 12:125186866 12:103987050 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA -TMEM132B--TDG BS_3NWQXPQV 3.71947538039117 2.09262503852443 NA NA differentially expressed differentially expressed NA NA 12:125186866 12:103987050 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA -TMEM132B--TDG BS_49852ZBH 3.67144858288539 0.179832876693339 NA NA differentially expressed no change NA NA 12:125186866 12:103987050 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA -TMEM132B--TDG BS_49BQS7Z6 4.63142746871743 -0.317186171222551 NA NA differentially expressed no change NA NA 12:125186866 12:103987050 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA -TMEM132B--TDG BS_9HSGV9TJ 4.8785764264307 0.565580587983179 NA NA differentially expressed no change NA NA 12:125186866 12:103987050 ARRIBA other 9 0 high [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA -TMEM132B--TDG BS_FQX1PRAJ 2.72339948626001 0.412404907743125 NA NA differentially expressed no change NA NA 12:125186866 12:103987050 ARRIBA other 2 0 high [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA -TMEM132B--TDG BS_G00FHF3Q 4.78420039571079 1.75551797972554 NA NA differentially expressed no change NA NA 12:125186866 12:103987050 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA -TMEM132B--TDG BS_GE2RVZE6 4.8263130168 1.91983476687694 NA NA differentially expressed no change NA NA 12:125186866 12:103987050 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA -TMEM132B--TDG BS_M8M56Z4Y 4.42177358251531 -0.0658145370851893 NA NA differentially expressed no change NA NA 12:125186866 12:103987050 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA -TMEM132B--TDG BS_SKGJ5SY9 5.98151796630068 3.39758639074482 NA NA differentially expressed differentially expressed NA NA 12:125186866 12:103987050 ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA -TMEM132B--TDG BS_T2QPMZCM 0.935789824440366 0.252464418242274 NA NA no change no change NA NA 12:125186866 12:103987050 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA -TMEM132B--TDG BS_TCGEZJ5F 3.71297922286807 0.351846323128168 NA NA differentially expressed no change NA NA 12:125186866 12:103987050 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA -TMEM132E--ETV4 BS_7327SDAQ 0.887726351953358 6.32029494598271 NA NA no change differentially expressed NA NA 17:34581143 17:43530181 ARRIBA in-frame 10 3 high [INTRACHROMOSOMAL[chr17:8.89Mb]],inversion TMEM132E NA ETV4 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -TMEM132E--ETV4 BS_7327SDAQ 0.887726351953358 6.32029494598271 NA NA no change differentially expressed NA NA 17:34581143 17:43529236 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:8.89Mb]],inversion TMEM132E NA ETV4 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -TMEM132E(1840)/AC005552.1(84351)--TMEM132E BS_ZR96A4FH 0.0109449422252697 0.0109449422252697 NA NA no change no change NA NA 17:34641158 17:34626127 ARRIBA other 5 0 medium [],duplication TMEM132E AC005552.1 TMEM132E NA NA NA NA NA NA -TMEM140--AC073114.1(115437)/AC092167.1(100422) BS_FCAKKZ20 -0.379557380289235 NA NA NA no change NA NA NA 7:135165596 7:110331817 ARRIBA other 13 1 medium [],deletion TMEM140 NA AC073114.1 AC092167.1 NA NA NA NA NA -TMEM147-AS1--NOA1 BS_6VPKXXMR -0.49848939845902 1.49795684534413 NA NA no change no change NA NA 19:35543480 4:56973230 ARRIBA other 7 1 medium [INTERCHROMOSOMAL[chr19--chr4]],translocation/3'-3' TMEM147-AS1 NA NOA1 NA NA NA NA NA NA -TMEM147-AS1--RNU6-974P(365965)/AL031313.1(130377) BS_6VPKXXMR -0.49848939845902 NA NA NA no change NA NA NA 19:35545064 X:82367292 ARRIBA other 4 0 medium [],translocation TMEM147-AS1 NA RNU6-974P AL031313.1 NA NA NA NA NA -TMEM14B--DST BS_NJ4WPQVK 1.01404628774074 0.393346064324939 NA NA no change no change NA NA 6:10755232 6:56792187 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr6:45.61Mb]],deletion/5'-5' TMEM14B NA DST NA NA Oncogene NA NA NA -TMEM163--CCNT2-AS1 BS_1G3WYEN3 0.845298160367525 1.40971925844144 NA NA no change no change NA NA 2:134713200 2:134869041 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA -TMEM163--CCNT2-AS1 BS_1G3WYEN3 0.845298160367525 1.40971925844144 NA NA no change no change NA NA 2:134550570 2:134869041 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA -TMEM163--CCNT2-AS1 BS_AMQGM1V9 0.132997248509473 1.77569617908379 NA NA no change no change NA NA 2:134713200 2:134869041 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA -TMEM163--CCNT2-AS1 BS_AMQGM1V9 0.132997248509473 1.77569617908379 NA NA no change no change NA NA 2:134550570 2:134869041 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA -TMEM163--CCNT2-AS1 BS_C7N3J4NW -0.410736225113594 1.98734093078857 NA NA no change no change NA NA 2:134550570 2:134869041 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA -TMEM163--CCNT2-AS1 BS_C7N3J4NW -0.410736225113594 1.98734093078857 NA NA no change no change NA NA 2:134713200 2:134869041 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA -TMEM163--CCNT2-AS1 BS_FWMJPKCV 1.3868871779205 2.21973329673739 NA NA no change differentially expressed NA NA 2:134713200 2:134869041 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA -TMEM163--CCNT2-AS1 BS_HCP5C912 -0.31522754663452 2.19614857554483 NA NA no change differentially expressed NA NA 2:134713200 2:134869041 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA -TMEM163--CCNT2-AS1 BS_HCP5C912 -0.31522754663452 2.19614857554483 NA NA no change differentially expressed NA NA 2:134502901 2:134869041 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA -TMEM163--CCNT2-AS1 BS_JVA2NQFF 1.43205698133456 2.23145251332685 NA NA no change differentially expressed NA NA 2:134713200 2:134869041 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA -TMEM163--CCNT2-AS1 BS_MF47B9ZW 0.742069377791857 2.26632237529545 NA NA no change differentially expressed NA NA 2:134550570 2:134869041 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA -TMEM163--CCNT2-AS1 BS_V7BJM89K -0.236254556525428 0.419299856250495 NA NA no change no change NA NA 2:134713200 2:134869041 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA -TMEM164--RAP2C-AS1 BS_37GTVG4N 5.29955730809682 3.74232761477342 NA NA differentially expressed differentially expressed NA NA X:110171520 X:132429813 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chrX:22.03Mb]],deletion TMEM164 NA RAP2C-AS1 NA NA NA NA NA NA -TMEM165--AC108467.1(212424)/THAP12P9(59177) BS_TGS109T3 1.97336497292845 NA NA NA no change NA NA NA 4:55424643 4:45264076 ARRIBA frameshift 11 1 high [],duplication TMEM165 NA AC108467.1 THAP12P9 NA NA NA NA NA -TMEM165--FRYL BS_EMMF4PZX 1.00631034907892 1.83146813684746 NA NA no change no change NA NA 4:55396396 4:48710698 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:6.62Mb]],inversion TMEM165 NA FRYL NA NA Oncogene NA NA NA -TMEM177--CFAP221 BS_7BTZQKYY 0.478387017890002 4.68798106958959 NA NA no change differentially expressed NA NA 2:119685754 2:119604672 ARRIBA frameshift 10 1 medium [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:+:[16916]],duplication TMEM177 NA CFAP221 NA NA NA NA NA NA -TMEM177--CFAP221 BS_FAVRBEW7 0.565866759348229 5.05284696411092 NA NA no change differentially expressed NA NA 2:119685754 2:119604672 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:+:[16916]],duplication TMEM177 NA CFAP221 NA NA NA NA NA NA -TMEM177--CFAP221 BS_RHD7XPNP 0.549305700857002 3.54726943014074 NA NA no change differentially expressed NA NA 2:119685754 2:119604672 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:+:[16916]],duplication TMEM177 NA CFAP221 NA NA NA NA NA NA -TMEM177--CFAP221 BS_X67GTEM6 -0.5959494915701 2.21124857829365 NA NA no change differentially expressed NA NA 2:119685754 2:119604672 ARRIBA frameshift 2 0 high [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:+:[16916]],duplication TMEM177 NA CFAP221 NA NA NA NA NA NA -TMEM177--CFAP221 BS_Z85M2R3N -0.703547631427895 5.32988093347039 NA NA no change differentially expressed NA NA 2:119685754 2:119604672 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:+:[16916]],duplication TMEM177 NA CFAP221 NA NA NA NA NA NA -TMEM184B--AC008591.1 BS_1D6PZNKN -0.464485562046959 NA NA NA no change NA NA NA 22:38272684 5:129509841 ARRIBA other 3 0 low [INTERCHROMOSOMAL[chr22--chr5]],translocation TMEM184B NA AC008591.1 NA NA NA NA NA NA -TMEM184B--ADAMTS19 BS_1D6PZNKN -0.464485562046959 1.73819058541156 NA NA no change no change NA NA 22:38272684 5:129509841 ARRIBA other 3 0 low [INTERCHROMOSOMAL[chr22--chr5]],translocation/5'-5' TMEM184B NA ADAMTS19 NA NA NA NA NA NA -TMEM184B--ELFN2 BS_1HQ76V6D -2.17262252566834 -1.23273761278263 NA NA differentially expressed no change NA NA 22:38245935 22:37377941 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr22:0.79Mb]],inversion/5'-5' TMEM184B NA ELFN2 NA NA NA NA NA NA -TMEM184B--ELFN2 BS_1HQ76V6D -2.17262252566834 -1.23273761278263 NA NA differentially expressed no change NA NA 22:38242634 22:37368339 ARRIBA other 3 2 medium [INTRACHROMOSOMAL[chr22:0.79Mb]],inversion/5'-5' TMEM184B NA ELFN2 NA NA NA NA NA NA -TMEM184B--LINC01399 BS_QWTE1CWR -0.111120231468352 74.5849400016736 NA NA no change differentially expressed NA NA 22:38272884 22:35195019 ARRIBA other 10 0 medium [INTRACHROMOSOMAL[chr22:2.99Mb]],deletion TMEM184B NA LINC01399 NA NA NA NA NA NA -TMEM184B--Z94160.2 BS_1HQ76V6D -2.17262252566834 NA NA NA differentially expressed NA NA NA 22:38245935 22:37372034 ARRIBA frameshift 11 2 high [INTRACHROMOSOMAL[chr22:0.85Mb]],inversion TMEM184B NA Z94160.2 NA NA NA NA NA NA -TMEM200C--TMEM14B BS_YA8RBGD8 6.81663259341028 -1.32579708657356 NA NA differentially expressed no change NA NA 18:5891064 6:10756467 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr18--chr6]],translocation TMEM200C NA TMEM14B NA NA NA NA NA NA -TMEM223--AP004550.1(64443)/AP001999.2(33927) BS_6MZ7FRZH -1.16048219690701 -0.315557315280136 NA NA no change no change NA NA 11:62790178 11:134637499 ARRIBA other 2 1 medium [],duplication TMEM223 NA AP004550.1 AP001999.2 NA NA NA NA NA -TMEM232--TMEM232 BS_7BTZQKYY 7.049362468552 7.049362468552 NA NA differentially expressed differentially expressed NA NA 5:110568447 5:110642371 ARRIBA frameshift 25 4 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA -TMEM232--TMEM232 BS_9DFBHHB5 0.664798588046061 0.664798588046061 NA NA no change no change NA NA 5:110420497 5:110528835 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA -TMEM232--TMEM232 BS_AGS1HHGF 3.80613948656777 3.80613948656777 NA NA differentially expressed differentially expressed NA NA 5:110387266 5:110424916 ARRIBA other 6 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA -TMEM232--TMEM232 BS_AGTPCRR4 3.50266410843599 3.50266410843599 NA NA differentially expressed differentially expressed NA NA 5:110387266 5:110424916 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA -TMEM232--TMEM232 BS_B741RZY9 6.71601169569335 6.71601169569335 NA NA differentially expressed differentially expressed NA NA 5:110387266 5:110424916 ARRIBA other 7 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA -TMEM232--TMEM232 BS_F6Z5HFWH 3.80386711861593 3.80386711861593 NA NA differentially expressed differentially expressed NA NA 5:110387266 5:110424916 ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA -TMEM232--TMEM232 BS_NRPG5K4K 1.72675539236392 1.72675539236392 NA NA no change no change NA NA 5:110387266 5:110424916 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA -TMEM232--TMEM232 BS_RHD7XPNP 5.11628556269868 5.11628556269868 NA NA differentially expressed differentially expressed NA NA 5:110387266 5:110424916 ARRIBA other 5 2 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA -TMEM232--TMEM232 BS_SDCNP7MW 6.89831637176191 6.89831637176191 NA NA differentially expressed differentially expressed NA NA 5:110568447 5:110642371 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA -TMEM232--TMEM232 BS_ZR96A4FH 1.18806744580393 1.18806744580393 NA NA no change no change NA NA 5:110640891 5:110642371 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA -TMEM242--NXF3 BS_052PZFMK -0.091419138477614 3.75747048890462 NA NA no change differentially expressed NA NA 6:157323412 X:103084883 ARRIBA in-frame 4 0 high [INTERCHROMOSOMAL[chr6--chrX]],translocation TMEM242 NA NXF3 NA NA NA NA NA NA -TMEM242--NXF3(24663)/RPSAP59(88222) BS_052PZFMK -0.091419138477614 3.75747048890462 NA NA no change differentially expressed NA NA 6:157323412 X:103117788 ARRIBA frameshift 3 1 high [],translocation TMEM242 NA NXF3 RPSAP59 NA NA NA NA NA -TMEM248--SVOPL BS_TRKH2SPE 1.66739330020502 -0.192794500342972 NA NA no change no change NA NA 7:66948694 7:138596530 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:71.64Mb]],inversion TMEM248 NA SVOPL NA NA NA NA NA NA -TMEM256P2--AC068489.1(180763)/AC009302.1(121647) BS_BWBDH9GM -0.145630171774159 -0.0416358721398405 NA NA no change no change NA NA 2:221532770 2:221822576 ARRIBA other 6 0 medium [],duplication TMEM256P2 NA AC068489.1 AC009302.1 NA NA NA NA NA -TMEM257--SLC9A6 BS_QXKRN6CR -1.24972765472099 -0.401826623948942 NA NA no change no change NA NA X:145828019 X:135994786 ARRIBA in-frame 1 1 high [INTRACHROMOSOMAL[chrX:9.78Mb]],duplication TMEM257 NA SLC9A6 NA NA NA NA NA NA -TMEM260--TMEM260 BS_7G42J2SK 0.921185502479482 0.921185502479482 NA NA no change no change NA NA 14:56616027 14:56585001 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.16Mb]],duplication/non-canonical_splicing TMEM260 NA TMEM260 NA NA NA NA NA NA -TMEM260--TMEM260 BS_EK5PCKY0 1.4347216056575 1.4347216056575 NA NA no change no change NA NA 14:56616027 14:56585001 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.16Mb]],duplication/non-canonical_splicing TMEM260 NA TMEM260 NA NA NA NA NA NA -TMEM266--TMEM266 BS_5PEFNDCY NA NA NA NA NA NA NA NA 15:76137895 15:76112018 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.17Mb]],duplication/non-canonical_splicing TMEM266 NA TMEM266 NA NA NA NA NA NA -TMEM266--TMEM266 BS_B741RZY9 NA NA NA NA NA NA NA NA 15:76137895 15:76112018 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.17Mb]],duplication/non-canonical_splicing TMEM266 NA TMEM266 NA NA NA NA NA NA -TMEM266--TMEM266 BS_EHVYJAVA NA NA NA NA NA NA NA NA 15:76137895 15:76112018 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.17Mb]],duplication/non-canonical_splicing TMEM266 NA TMEM266 NA NA NA NA NA NA -TMEM266--TMEM266 BS_N6NE6B3W NA NA NA NA NA NA NA NA 15:76137895 15:76112018 ARRIBA frameshift 21 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.17Mb]],duplication/non-canonical_splicing TMEM266 NA TMEM266 NA NA NA NA NA NA -TMEM268--AL590627.2 BS_A0DYVX9J NA NA NA NA NA NA NA NA 9:114637070 9:137678596 ARRIBA frameshift 17 5 high [INTRACHROMOSOMAL[chr9:22.97Mb]],inversion/3'-3' TMEM268 NA AL590627.2 NA NA NA NA NA NA -TMEM268--C9orf135 BS_A0DYVX9J NA 3.70586894264502 NA NA NA differentially expressed NA NA 9:114633899 9:69856555 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr9:44.70Mb]],inversion/3'-3' TMEM268 NA C9orf135 NA NA NA NA NA NA -TMEM268--EHMT1 BS_A0DYVX9J NA 0.667412004356463 NA NA NA no change NA NA 9:114637070 9:137678596 ARRIBA frameshift 17 5 high [INTRACHROMOSOMAL[chr9:22.97Mb]],inversion/3'-3' TMEM268 NA EHMT1 NA NA Oncogene NA NA NA -TMEM41B--PLSCR2 BS_6JHXXVR7 0.0190253142968553 3.85201616027259 NA NA no change differentially expressed NA NA 11:9314321 3:146419143 ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr11--chr3]],translocation TMEM41B NA PLSCR2 NA NA NA NA NA NA -TMEM67(1002)/AC084346.1(14218)--TMEM67 BS_7BTZQKYY 6.46050419152207 6.46050419152207 NA NA differentially expressed differentially expressed NA NA 8:93820236 8:93786223 ARRIBA other 2 0 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(1002)/AC084346.1(14218)--TMEM67 BS_91VYM11A 3.48879320483856 3.48879320483856 NA NA differentially expressed differentially expressed NA NA 8:93820236 8:93786223 ARRIBA other 1 0 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(12338)/AC084346.1(2882)--TMEM67 BS_2Z1MKS84 1.40134619361933 1.40134619361933 NA NA no change no change NA NA 8:93831572 8:93755047 ARRIBA other 2 1 medium [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(12338)/AC084346.1(2882)--TMEM67 BS_B741RZY9 5.01680768953372 5.01680768953372 NA NA differentially expressed differentially expressed NA NA 8:93831572 8:93755020 ARRIBA other 1 1 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(12338)/AC084346.1(2882)--TMEM67 BS_EVCAC3NH 3.55059781305796 3.55059781305796 NA NA differentially expressed differentially expressed NA NA 8:93831572 8:93755020 ARRIBA other 1 2 high [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(12338)/AC084346.1(2882)--TMEM67 BS_FAVRBEW7 5.6214129455335 5.6214129455335 NA NA differentially expressed differentially expressed NA NA 8:93831572 8:93786223 ARRIBA other 1 5 medium [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(12338)/AC084346.1(2882)--TMEM67 BS_M15PW2N0 2.40074570530418 2.40074570530418 NA NA differentially expressed differentially expressed NA NA 8:93831572 8:93755020 ARRIBA other 2 0 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(12338)/AC084346.1(2882)--TMEM67 BS_RSRPX3S8 1.33173935503597 1.33173935503597 NA NA no change no change NA NA 8:93831572 8:93755020 ARRIBA other 3 0 high [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(12338)/AC084346.1(2882)--TMEM67 BS_ZV68CES9 2.39611758592291 2.39611758592291 NA NA differentially expressed differentially expressed NA NA 8:93831572 8:93755020 ARRIBA other 1 2 high [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(14293)/AC084346.1(927)--TMEM67 BS_Z85M2R3N 5.57306004387459 5.57306004387459 NA NA differentially expressed differentially expressed NA NA 8:93833527 8:93786223 ARRIBA other 1 3 medium [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(3329)/AC084346.1(11891)--TMEM67 BS_3X9WMZGJ 5.62729872963104 5.62729872963104 NA NA differentially expressed differentially expressed NA NA 8:93822563 8:93780593 ARRIBA other 1 2 high [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(3329)/AC084346.1(11891)--TMEM67 BS_53M8PP88 3.9907869212793 3.9907869212793 NA NA differentially expressed differentially expressed NA NA 8:93822563 8:93755020 ARRIBA other 1 0 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(3329)/AC084346.1(11891)--TMEM67 BS_G63HYD6N 2.78397710162402 2.78397710162402 NA NA differentially expressed differentially expressed NA NA 8:93822563 8:93799618 ARRIBA other 2 0 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(3329)/AC084346.1(11891)--TMEM67 BS_MKM0EEN1 1.71073058754598 1.71073058754598 NA NA no change no change NA NA 8:93822563 8:93755020 ARRIBA other 1 1 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(3329)/AC084346.1(11891)--TMEM67 BS_RHD7XPNP 4.41711467274859 4.41711467274859 NA NA differentially expressed differentially expressed NA NA 8:93822563 8:93799618 ARRIBA other 2 0 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(3329)/AC084346.1(11891)--TMEM67 BS_W4HGV6E7 5.84878918978893 5.84878918978893 NA NA differentially expressed differentially expressed NA NA 8:93822563 8:93799618 ARRIBA other 5 0 medium [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(996)/AC084346.1(14224)--TMEM67 BS_09Z7TC35 1.50504699242448 1.50504699242448 NA NA no change no change NA NA 8:93820230 8:93786223 ARRIBA other 2 0 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM67(996)/AC084346.1(14224)--TMEM67 BS_QPPPGYP4 0.56111501963075 0.56111501963075 NA NA no change no change NA NA 8:93820230 8:93786223 ARRIBA other 1 0 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA -TMEM8A--CTBP1 BS_MGAMKKBD 1.69926304039108 -1.03540397351327 NA NA no change no change NA NA 16:381701 4:1216205 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation TMEM8A NA CTBP1 NA NA NA NA NA NA -TMLHE-AS1--F8A2(36332)/F8A3(37352) BS_DMZP9G1H -0.607677713976602 NA NA 1.38107775792309 no change NA NA no change X:155509901 X:155419562 ARRIBA other 3 0 low [],inversion TMLHE-AS1 NA F8A2 F8A3 NA NA NA NA NA -TMSB10--GNAS BS_JR5ATB7G 1.19522463495218 0.144017658661509 NA NA no change no change NA NA 2:84906115 20:58909352 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr2--chr20]],translocation TMSB10 NA GNAS NA Oncogene CosmicCensus, Oncogene NA NA NA -TMTC2--METTL25 BS_4EN8D8Y4 -0.293530624154122 1.25999738491155 NA NA no change no change NA NA 12:82687669 12:82456727 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr12:0.21Mb]],duplication TMTC2 NA METTL25 NA NA NA NA NA NA -TMTC2--METTL25 BS_52MPKTJH 1.55204688720096 3.4565198196243 NA NA no change differentially expressed NA NA 12:82687669 12:82456727 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr12:0.21Mb]],duplication TMTC2 NA METTL25 NA NA NA NA NA NA -TMTC2--SLC27A5 BS_QWTE1CWR -0.887091777623457 -3.44179062997885 NA NA no change differentially expressed NA NA 12:83061831 19:58491713 ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr12--chr19]],translocation/5'-5' TMTC2 NA SLC27A5 NA NA NA NA NA NA -TMX4--PLCB1 BS_RQSKD7PN 1.0380771346498 0.316529010609543 NA NA no change no change NA NA 20:7983794 20:8213165 ARRIBA frameshift 12 1 high [INTRACHROMOSOMAL[chr20:0.06Mb],LOCAL_INVERSION:-:+:[57422]],duplication/5'-5' TMX4 NA PLCB1 NA NA Oncogene NA NA NA -TNFAIP1--AC007491.1(93439)/CRNDE(94088) BS_VJ2S5DVS 1.38199468998703 NA NA 1.67423303352905 no change NA NA no change 17:28341460 16:54751101 ARRIBA frameshift 13 0 medium [],translocation TNFAIP1 NA AC007491.1 CRNDE Oncogene NA NA NA NA -TNFAIP3--NCF2 BS_MGAMKKBD 10.7770805796606 8.94584203727013 NA NA differentially expressed differentially expressed NA NA 6:137867494 1:183567345 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr6--chr1]],translocation TNFAIP3 NA NCF2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -TNFRSF10B--AC022360.2(242240)/RNU4-37P(149676) BS_HZRM07TW 1.84026523912879 NA NA NA no change NA NA NA 8:23043138 8:111999066 ARRIBA frameshift 1 1 high [],duplication TNFRSF10B NA AC022360.2 RNU4-37P TumorSuppressorGene NA NA NA NA -TNFRSF10B--AC022360.2(308968)/RNU4-37P(82948) BS_HZRM07TW 1.84026523912879 NA NA NA no change NA NA NA 8:23043138 8:112065794 ARRIBA frameshift 14 2 high [],duplication TNFRSF10B NA AC022360.2 RNU4-37P TumorSuppressorGene NA NA NA NA -TNFSF4(139205)/AL645568.3(5171)--AL645568.1 BS_N8J1DP02 4.42511348197998 NA NA NA differentially expressed NA NA NA 1:173346518 1:173442097 ARRIBA other 2 1 medium [],duplication TNFSF4 AL645568.3 AL645568.1 NA NA NA NA NA NA -TNKS--NCALD BS_HZRM07TW 3.4603645777717 0.0337981439540671 NA NA differentially expressed no change NA NA 8:9733444 8:101692896 ARRIBA in-frame 41 2 high [INTRACHROMOSOMAL[chr8:91.90Mb]],inversion TNKS NA NCALD NA NA NA NA NA NA -TNKS--NCALD BS_HZRM07TW 3.4603645777717 0.0337981439540671 NA NA differentially expressed no change NA NA 8:9726720 8:101692896 ARRIBA in-frame 11 0 high [INTRACHROMOSOMAL[chr8:91.90Mb]],inversion TNKS NA NCALD NA NA NA NA NA NA -TNKS--NCALD BS_HZRM07TW 3.4603645777717 0.0337981439540671 NA NA differentially expressed no change NA NA 8:9731035 8:101692896 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr8:91.90Mb]],inversion TNKS NA NCALD NA NA NA NA NA NA -TNKS--TNKS BS_7G42J2SK 2.2422945195201 2.2422945195201 NA NA differentially expressed differentially expressed NA NA 8:9770262 8:9734865 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.23Mb]],duplication/non-canonical_splicing TNKS NA TNKS NA NA NA NA NA NA -TNNI3K--TNNI3K BS_C7N3J4NW -1.33328995998294 -1.33328995998294 NA NA no change no change NA NA 1:74492266 1:74439490 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.31Mb]],duplication/non-canonical_splicing TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA -TNNI3K--TNNI3K BS_KPT2WPHW -1.22918452764266 -1.22918452764266 NA NA no change no change NA NA 1:74492266 1:74439490 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.31Mb]],duplication/non-canonical_splicing TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA -TNNI3K--TNNI3K BS_M1PVEHCM -0.92262046271937 -0.92262046271937 NA NA no change no change NA NA 1:74492266 1:74439490 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.31Mb]],duplication/non-canonical_splicing TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA -TNNI3K--TNNI3K BS_TDEFAPNH -1.31039819625781 -1.31039819625781 NA NA no change no change NA NA 1:74492266 1:74439490 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.31Mb]],duplication/non-canonical_splicing TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA -TNNI3K--TNNI3K BS_TG93XC55 0.0895766536045855 0.0895766536045855 NA NA no change no change NA NA 1:74492266 1:74439490 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.31Mb]],duplication/non-canonical_splicing TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA -TNNI3K--TNNI3K BS_ZRM0W01M -1.28783269207138 -1.28783269207138 NA NA no change no change NA NA 1:74492266 1:74439490 ARRIBA frameshift 2 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.31Mb]],duplication/non-canonical_splicing TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA -TNPO2--IER2 BS_QRDT19KS 1.94840301442203 -0.156788713785479 NA NA no change no change NA NA 19:12710621 19:13153612 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/5'-5' TNPO2 NA IER2 NA NA Oncogene NA NA NA -TNR--RFWD2 BS_V7BJM89K 4.04676657274268 0.427173438671235 NA NA differentially expressed no change NA NA 1:175528269 1:176085890 ARRIBA other 1 1 low [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.20Mb]],duplication TNR NA RFWD2 NA Oncogene TumorSuppressorGene NA NA TCGAFusion -TNS1--AC009226.1 BS_B9V8RGTA 1.44971972705043 NA NA NA no change NA NA NA 2:217990942 2:207309163 ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr2:10.27Mb]],inversion/5'-5' TNS1 NA AC009226.1 NA NA NA NA NA NA -TNS1--TNS1 BS_EMMF4PZX 3.63415824540772 3.63415824540772 NA NA differentially expressed differentially expressed NA NA 2:217831455 2:217812022 ARRIBA frameshift 35 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.20Mb]],inversion/5'-5' TNS1 NA TNS1 NA NA NA NA NA NA -TNS1--TNS1 BS_EMMF4PZX 3.63415824540772 3.63415824540772 NA NA differentially expressed differentially expressed NA NA 2:217812149 2:217804601 ARRIBA other 23 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.20Mb]],inversion/3'-3' TNS1 NA TNS1 NA NA NA NA NA NA -TNS1--UNC80 BS_M0QYNVK8 4.10293180941562 0.148611007349604 NA NA differentially expressed no change NA NA 2:217978765 2:209820417 ARRIBA frameshift 13 1 high [INTRACHROMOSOMAL[chr2:7.80Mb]],deletion/5'-5' TNS1 NA UNC80 NA NA NA NA NA NA -TNS3--BRAF BS_593HEWBF 2.10419035236569 2.27030408702492 NA NA differentially expressed differentially expressed NA NA 7:47396800 7:140783157 ARRIBA in-frame 79 4 high [INTRACHROMOSOMAL[chr7:93.14Mb]],duplication TNS3 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -TNS3--COA1 BS_MX23ZY0Y -0.361592708980693 3.82157794869916 NA NA no change differentially expressed NA NA 7:47396800 7:43648652 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr7:3.55Mb]],deletion TNS3 NA COA1 NA NA NA NA NA NA -TNS3--COA1 BS_MX23ZY0Y -0.361592708980693 3.82157794869916 NA NA no change differentially expressed NA NA 7:47396800 7:43665722 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:3.55Mb]],deletion TNS3 NA COA1 NA NA NA NA NA NA -TNS3--COA1 BS_P9JP6JFA 2.08215067666704 0.62227271229796 NA NA differentially expressed no change NA NA 7:47396800 7:43665722 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr7:3.55Mb]],deletion TNS3 NA COA1 NA NA NA NA NA NA -TNS3--COA1 BS_P9JP6JFA 2.08215067666704 0.62227271229796 NA NA differentially expressed no change NA NA 7:47396800 7:43648652 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr7:3.55Mb]],deletion TNS3 NA COA1 NA NA NA NA NA NA -TNS3--COA1 BS_P9JP6JFA 2.08215067666704 0.62227271229796 NA NA differentially expressed no change NA NA 7:47396800 7:43650712 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:3.55Mb]],deletion TNS3 NA COA1 NA NA NA NA NA NA -TOGARAM1--TNFRSF21 BS_6JHXXVR7 NA 1.20091780887475 NA NA NA no change NA NA 14:44964467 6:47234898 ARRIBA in-frame 9 1 high [INTERCHROMOSOMAL[chr14--chr6]],translocation TOGARAM1 NA TNFRSF21 NA NA NA NA NA NA -TOGARAM1--TOLLIP BS_6JHXXVR7 NA -1.24143586956657 NA NA NA no change NA NA 14:44964467 11:1277253 ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr14--chr11]],translocation TOGARAM1 NA TOLLIP NA NA NA NA NA NA -TOM1L2--AC005180.2 BS_09Z7TC35 -2.32858035189341 NA NA NA differentially expressed NA NA NA 17:17955415 17:44794204 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr17:26.82Mb]],inversion TOM1L2 NA AC005180.2 NA TumorSuppressorGene NA NA NA NA -TOP2A--SMG1 BS_TJTEF70D 11.0439219638137 0.800365144019705 NA NA differentially expressed no change NA NA 17:40391506 16:18828168 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr17--chr16]],translocation TOP2A NA SMG1 NA Oncogene Kinase, Kinase NA NA NA -TOP3A--AC005244.2(152122)/LINC00670(182393) BS_FCAKKZ20 3.27117134062369 NA NA 3.16515614170211 differentially expressed NA NA differentially expressed 17:18299324 17:12367389 ARRIBA frameshift 2 1 medium [],inversion TOP3A NA AC005244.2 LINC00670 NA NA NA NA NA -TOR3A--C1orf21 BS_QC3XCE6X 1.25438557651069 0.461568623966032 NA NA no change no change NA NA 1:179088089 1:184598401 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:5.29Mb]],deletion TOR3A NA C1orf21 NA NA NA NA NA NA -TOX--LINC01419(433313)/AC015522.1(70500) BS_HZRM07TW -0.711577660272207 354.8325637159 NA NA no change differentially expressed NA NA 8:59118886 8:83842213 ARRIBA frameshift 7 1 high [],inversion TOX NA LINC01419 AC015522.1 NA NA NA NA NA -TP53--PSMG4 BS_NJ4WPQVK 0.724968089968626 0.884886861684294 NA NA no change no change NA NA 17:7687377 6:3302858 ARRIBA other 4 0 high [INTERCHROMOSOMAL[chr17--chr6]],translocation TP53 NA PSMG4 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -TP53--PSMG4 BS_NJ4WPQVK 0.724968089968626 0.884886861684294 NA NA no change no change NA NA 17:7687377 6:3255051 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr17--chr6]],translocation TP53 NA PSMG4 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -TP53BP1--PRR32(255620)/Z82209.1(312936) BS_NGHK9RZP 1.66122166711595 -0.479358381273428 NA NA no change no change NA NA 15:43475565 X:127077406 ARRIBA frameshift 35 0 high [],translocation TP53BP1 NA PRR32 Z82209.1 TumorSuppressorGene NA NA NA NA -TP53BP1--TP53BP1 BS_EK5PCKY0 2.16103700874744 2.16103700874744 NA NA differentially expressed differentially expressed NA NA 15:43407943 15:43416416 ARRIBA in-frame 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.11Mb]],duplication/non-canonical_splicing TP53BP1 NA TP53BP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA -TP53I3--AC019211.1 BS_4JWBB28H 3.97423867456116 NA NA NA differentially expressed NA NA NA 2:24080838 2:220205079 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr2:196.02Mb]],deletion/3'-3' TP53I3 NA AC019211.1 NA NA NA NA NA NA -TP53I3--AC093083.1 BS_4JWBB28H 3.97423867456116 NA NA NA differentially expressed NA NA NA 2:24080838 2:220205079 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr2:196.04Mb]],deletion/3'-3' TP53I3 NA AC093083.1 NA NA NA NA NA NA -TP63--TP63 BS_W4HGV6E7 12.4333249028921 12.4333249028921 NA NA differentially expressed differentially expressed NA NA 3:189808526 3:189737740 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.27Mb]],duplication/non-canonical_splicing TP63 NA TP63 NA TumorSuppressorGene, CosmicCensus, TranscriptionFactor TumorSuppressorGene, CosmicCensus, TranscriptionFactor NA NA NA -TPM3--NTRK1 BS_KP735TJ6 -0.464645976688514 2.25335525709219 NA NA no change differentially expressed NA NA 1:154158957 1:156875192 ARRIBA frameshift 5 1 medium [HaasMedCancer,Klijn_CellLines,chimerdb_pubmed,CCLE,FA_CancerSupp,ChimerKB,ChimerSeq,ChimerPub,Cosmic,INTRACHROMOSOMAL[chr1:2.62Mb]],inversion TPM3 NA NTRK1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -TPM3--NTRK1 BS_KP735TJ6 -0.464645976688514 2.25335525709219 NA NA no change differentially expressed NA NA 1:154169305 1:156875520 ARRIBA frameshift 3 0 medium [HaasMedCancer,Klijn_CellLines,chimerdb_pubmed,CCLE,FA_CancerSupp,ChimerKB,ChimerSeq,ChimerPub,Cosmic,INTRACHROMOSOMAL[chr1:2.62Mb]],inversion TPM3 NA NTRK1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -TPM3--PKLR BS_Y3G1X98S 1.2865854544713 0.121300581170092 NA NA no change no change NA NA 1:154182988 1:155301416 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:1.10Mb]],duplication TPM3 NA PKLR NA CosmicCensus, Oncogene NA NA NA NA -TPRA1--MIR3681HG BS_E3BAT4C1 0.239207951648132 NA NA NA no change NA NA NA 3:127590410 2:12558206 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr3--chr2]],translocation TPRA1 NA MIR3681HG NA NA NA NA NA NA -TPRA1--MIR3681HG BS_E3BAT4C1 0.239207951648132 NA NA NA no change NA NA NA 3:127590410 2:12340218 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr3--chr2]],translocation TPRA1 NA MIR3681HG NA NA NA NA NA NA -TPRA1--MIR3681HG BS_E3BAT4C1 0.239207951648132 NA NA NA no change NA NA NA 3:127590410 2:12308688 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr3--chr2]],translocation TPRA1 NA MIR3681HG NA NA NA NA NA NA -TPST1--BHMT BS_HB03GSHF 0.0409354181831794 19.4928478204214 NA NA no change differentially expressed NA NA 7:66394350 5:79130933 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation/3'-3' TPST1 NA BHMT NA NA NA NA NA NA -TPST2--CECR2 BS_49BQS7Z6 1.79498442358638 0.68755970827205 NA NA no change no change NA NA 22:26590053 22:17552835 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr22:8.96Mb]],inversion TPST2 NA CECR2 NA NA NA NA NA NA -TPST2--IGLV5-52(2469)/IGLV1-51(777) BS_M4923M40 -1.09507548905942 2.69406725397502 NA 1.41704085322859 no change differentially expressed NA no change 22:26590053 22:22321695 ARRIBA other 3 0 medium [],deletion TPST2 NA IGLV5-52 IGLV1-51 NA NA NA NA NA -TPST2--NDUFB9P2(121049)/AC009518.2(17315) BS_70FFPA51 -1.35650046520552 NA NA -0.110375078306995 no change NA NA no change 22:26590053 7:131875301 ARRIBA other 2 0 medium [],translocation TPST2 NA NDUFB9P2 AC009518.2 NA NA NA NA NA -TPTE--BAGE2 BS_MKM0EEN1 45.8110826279914 86.1720293820569 NA NA differentially expressed differentially expressed NA NA 21:10527412 21:10514122 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA -TPTE--BAGE2 BS_MKM0EEN1 45.8110826279914 86.1720293820569 NA NA differentially expressed differentially expressed NA NA 21:10524688 21:10514122 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA -TPTE--BAGE2 BS_MKM0EEN1 45.8110826279914 86.1720293820569 NA NA differentially expressed differentially expressed NA NA 21:10527412 21:10499475 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA -TPTE--BAGE2 BS_RCCN63K6 43.1778097434391 146.353358286553 NA NA differentially expressed differentially expressed NA NA 21:10543382 21:10485618 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA -TPTE--BAGE2 BS_RCCN63K6 43.1778097434391 146.353358286553 NA NA differentially expressed differentially expressed NA NA 21:10527412 21:10514122 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA -TPTE--BAGE2 BS_RCCN63K6 43.1778097434391 146.353358286553 NA NA differentially expressed differentially expressed NA NA 21:10542448 21:10454134 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA -TPTE--BAGE2 BS_RCCN63K6 43.1778097434391 146.353358286553 NA NA differentially expressed differentially expressed NA NA 21:10527412 21:10454134 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA -TPTE--BAGE2 BS_S5P8VTN5 2.67401679478506 67.4074202174886 NA NA differentially expressed differentially expressed NA NA 21:10543382 21:10454134 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA -TPTE--BAGE2 BS_S5P8VTN5 2.67401679478506 67.4074202174886 NA NA differentially expressed differentially expressed NA NA 21:10527412 21:10482740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA -TPTE--BAGE2 BS_S5P8VTN5 2.67401679478506 67.4074202174886 NA NA differentially expressed differentially expressed NA NA 21:10527412 21:10499475 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA -TPTE--BAGE2 BS_S5P8VTN5 2.67401679478506 67.4074202174886 NA NA differentially expressed differentially expressed NA NA 21:10527412 21:10514122 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA -TPTE2--MRPS31P2 BS_WYG77VVP 0.628252718044125 13.8536860702567 NA NA no change differentially expressed NA NA 13:19475573 13:19570288 ARRIBA frameshift 8 4 high [FA_CancerSupp,INTRACHROMOSOMAL[chr13:0.02Mb],LOCAL_REARRANGEMENT:-:[15809]],duplication TPTE2 NA MRPS31P2 NA TumorSuppressorGene NA NA NA NA -TPTE2P2--TPTE2P2 BS_FAVRBEW7 10.2970191121371 10.2970191121371 NA NA differentially expressed differentially expressed NA NA 13:52223239 13:52233144 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.11Mb]],duplication/non-canonical_splicing TPTE2P2 NA TPTE2P2 NA NA NA NA NA NA -TPTEP1--VMAC BS_K17VQECG 1.98789391729227 2.89128302395976 NA NA no change differentially expressed NA NA 22:16638740 19:5908824 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr22--chr19]],translocation TPTEP1 NA VMAC NA NA NA NA NA NA -TRA2B--AP000797.1(115714)/LINC02151(429694) BS_5CTVXVRX 1.80030107854223 17.7959448913914 NA NA no change differentially expressed NA NA 3:185937825 11:116067205 ARRIBA frameshift 12 0 high [],translocation TRA2B NA AP000797.1 LINC02151 NA NA NA NA NA -TRA2B--AP000797.1(115714)/LINC02151(429694) BS_8ZS9F31R 2.10472195645817 25.7824094647046 NA NA differentially expressed differentially expressed NA NA 3:185937825 11:116067205 ARRIBA frameshift 8 0 high [],translocation TRA2B NA AP000797.1 LINC02151 NA NA NA NA NA -TRA2B--AP002991.1 BS_5CTVXVRX 1.80030107854223 NA NA NA no change NA NA NA 3:185937825 11:115789344 ARRIBA frameshift 10 1 high [INTERCHROMOSOMAL[chr3--chr11]],translocation/5'-5' TRA2B NA AP002991.1 NA NA NA NA NA NA -TRA2B--AP002991.1 BS_8ZS9F31R 2.10472195645817 NA NA NA differentially expressed NA NA NA 3:185937825 11:115789344 ARRIBA frameshift 14 2 high [INTERCHROMOSOMAL[chr3--chr11]],translocation/5'-5' TRA2B NA AP002991.1 NA NA NA NA NA NA -TRA2B--AP002991.1(41217)/AP000797.3(48411) BS_8ZS9F31R 2.10472195645817 NA NA -0.278223241928709 differentially expressed NA NA no change 3:185937825 11:115884363 ARRIBA frameshift 2 0 medium [],translocation TRA2B NA AP002991.1 AP000797.3 NA NA NA NA NA -TRAF3--TEX41 BS_W644VEVE -1.10850209093828 10.0909994380525 NA NA no change differentially expressed NA NA 14:102777675 2:145171998 ARRIBA other 6 0 high [INTERCHROMOSOMAL[chr14--chr2]],translocation TRAF3 NA TEX41 NA Oncogene NA NA NA NA -TRAF3--TEX41 BS_W644VEVE -1.10850209093828 10.0909994380525 NA NA no change differentially expressed NA NA 14:102777675 2:145164173 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr14--chr2]],translocation TRAF3 NA TEX41 NA Oncogene NA NA NA NA -TRAK1--AC034195.1 BS_FAQQ0GCQ 0.375816214048068 NA NA NA no change NA NA NA 3:42189124 3:3601235 ARRIBA frameshift 10 6 high [INTRACHROMOSOMAL[chr3:38.39Mb]],inversion TRAK1 NA AC034195.1 NA NA NA NA NA NA -TRAK1--TRAK1 BS_2XD3MNKD 0.601240545000598 0.601240545000598 NA NA no change no change NA NA 3:42125614 3:42115354 ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr3:0.21Mb]],duplication TRAK1 NA TRAK1 NA NA NA NA NA NA -TRANK1--TRANK1 BS_NT9NZYFD -0.31883153661129 -0.31883153661129 NA NA no change no change NA NA 3:36874126 3:36903275 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.12Mb]],duplication/non-canonical_splicing TRANK1 NA TRANK1 NA NA NA NA NA NA -TRAPPC10--AC244100.3 BS_X2QTK3QD 2.23724901293163 NA NA NA differentially expressed NA NA NA 21:44059214 17:36010020 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr21--chr17]],translocation TRAPPC10 NA AC244100.3 NA NA NA NA NA NA -TRAPPC10--LYZL6(17857)/AC244100.1(1932) BS_X2QTK3QD 2.23724901293163 -0.210048779027269 NA NA differentially expressed no change NA NA 21:44059214 17:35961556 ARRIBA frameshift 51 7 high [],translocation TRAPPC10 NA LYZL6 AC244100.1 NA NA NA NA NA -TRAPPC2--ATP6AP2 BS_37GTVG4N 1.7083344913622 0.8164922499035 NA NA no change no change NA NA X:13734044 X:40588986 ARRIBA frameshift 129 19 high [INTRACHROMOSOMAL[chrX:26.84Mb]],inversion TRAPPC2 NA ATP6AP2 NA NA NA NA NA NA -TRAPPC2--ATP6AP2 BS_37GTVG4N 1.7083344913622 0.8164922499035 NA NA no change no change NA NA X:13734525 X:40588986 ARRIBA other 9 0 medium [INTRACHROMOSOMAL[chrX:26.84Mb]],inversion TRAPPC2 NA ATP6AP2 NA NA NA NA NA NA -TRAPPC2--ATP6AP2 BS_37GTVG4N 1.7083344913622 0.8164922499035 NA NA no change no change NA NA X:13734044 X:40591234 ARRIBA frameshift 1 3 medium [INTRACHROMOSOMAL[chrX:26.84Mb]],inversion TRAPPC2 NA ATP6AP2 NA NA NA NA NA NA -TRAPPC2--ATP6AP2 BS_37GTVG4N 1.7083344913622 0.8164922499035 NA NA no change no change NA NA X:13734525 X:40591234 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chrX:26.84Mb]],inversion TRAPPC2 NA ATP6AP2 NA NA NA NA NA NA -TRAPPC4--FOXR1 BS_QEYPFYHD -0.585349947717738 26.6891236527446 NA NA no change differentially expressed NA NA 11:119018725 11:118971780 ARRIBA other 35 5 medium [INTRACHROMOSOMAL[chr11:0.04Mb],LOCAL_REARRANGEMENT:+:[37141]],duplication TRAPPC4 NA FOXR1 NA NA CosmicCensus, TranscriptionFactor NA NA NA -TRGV7--MBNL1 BS_49F4RAA4 12.7386552187152 5.37559112531502 NA NA differentially expressed differentially expressed NA NA 7:38335472 3:152459271 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr7--chr3]],translocation TRGV7 NA MBNL1 NA NA NA NA NA NA -TRGV7--MBNL1 BS_ZHHAM3AN 10.5713851600011 5.7896130605859 NA NA differentially expressed differentially expressed NA NA 7:38335472 3:152459271 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr7--chr3]],translocation TRGV7 NA MBNL1 NA NA NA NA NA NA -TRHDE--TRHDE BS_ET8CJXSF 1.31975981851411 1.31975981851411 NA NA no change no change NA NA 12:72378121 12:72370764 ARRIBA frameshift 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr12:0.40Mb]],duplication TRHDE NA TRHDE NA NA NA NA NA NA -TRHDE--TRHDE BS_NT9NZYFD 1.00567469777654 1.00567469777654 NA NA no change no change NA NA 12:72499635 12:72375990 ARRIBA frameshift 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr12:0.40Mb]],duplication TRHDE NA TRHDE NA NA NA NA NA NA -TRIM24--BRAF BS_4B0BAVTX 5.7209287970633 1.8880134474259 NA NA differentially expressed no change NA NA 7:138554864 7:140787584 ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr7:2.13Mb]],inversion TRIM24 NA BRAF NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -TRIM24--BRAF BS_4B0BAVTX 5.7209287970633 1.8880134474259 NA NA differentially expressed no change NA NA 7:138554966 7:140787584 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:2.13Mb]],inversion TRIM24 NA BRAF NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -TRIM24--BRAF BS_HX0S30NE 7.67335489597872 2.35413687712063 NA NA differentially expressed differentially expressed NA NA 7:138514473 7:140801883 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr7:2.13Mb]],deletion/5'-5' TRIM24 NA BRAF NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -TRIM24--BRAF BS_HX0S30NE 7.67335489597872 2.35413687712063 NA NA differentially expressed differentially expressed NA NA 7:138538803 7:140801560 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:2.13Mb]],inversion TRIM24 NA BRAF NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -TRIM24--BRAF BS_YB2RXRHT 3.79693712893778 2.32818000980563 NA NA differentially expressed differentially expressed NA NA 7:138514473 7:140801883 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:2.13Mb]],deletion/5'-5' TRIM24 NA BRAF NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -TRIM24--BRAF(2307)/AC006006.1(7796) BS_HX0S30NE 7.67335489597872 2.35413687712063 NA NA differentially expressed differentially expressed NA NA 7:138504408 7:140927071 ARRIBA frameshift 5 1 medium [],deletion TRIM24 NA BRAF AC006006.1 TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -TRIM24--ROS1 BS_S2TA8R29 1.50175017288153 3.0075970163929 NA NA no change differentially expressed NA NA 7:138519321 6:117320030 ARRIBA in-frame 12 2 high [INTERCHROMOSOMAL[chr7--chr6]],translocation TRIM24 NA ROS1 NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA -TRIM24--RSAD1(5682)/AC021491.1(11755) BS_6VPKXXMR 8.59025500051581 -1.31711944288335 NA NA differentially expressed no change NA NA 7:138588275 17:50491657 ARRIBA other 22 3 medium [],translocation TRIM24 NA RSAD1 AC021491.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -TRIM24--RSAD1(5682)/AC021491.1(11755) BS_M85CXHDV 6.81967714832116 -0.870544378220427 NA NA differentially expressed no change NA NA 7:138588275 17:50491657 ARRIBA other 8 1 medium [],translocation TRIM24 NA RSAD1 AC021491.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -TRIM33--NR1H5P BS_JRYJGYC4 3.11251899155054 -0.051075430432349 NA NA differentially expressed no change NA NA 1:114510551 1:114840776 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.33Mb]],duplication/5'-5' TRIM33 NA NR1H5P NA CosmicCensus, Oncogene NA NA NA NA -TRIM33--SIKE1 BS_JRYJGYC4 3.11251899155054 6.93988156399764 NA NA differentially expressed differentially expressed NA NA 1:114510551 1:114779284 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr1:0.26Mb]],duplication TRIM33 NA SIKE1 NA CosmicCensus, Oncogene NA NA NA NA -TRIM33--SYCP1 BS_JRYJGYC4 3.11251899155054 0.276757368530994 NA NA differentially expressed no change NA NA 1:114510551 1:114899924 ARRIBA frameshift 15 1 high [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.34Mb]],duplication/5'-5' TRIM33 NA SYCP1 NA CosmicCensus, Oncogene NA NA NA NA -TRIM37--MSI2 BS_PNYN0AYD 0.0125731075831868 2.22431489700334 NA NA no change differentially expressed NA NA 17:59070823 17:57386377 ARRIBA frameshift 24 2 high [CCLE,INTRACHROMOSOMAL[chr17:1.30Mb]],deletion/5'-5' TRIM37 NA MSI2 NA Oncogene CosmicCensus, Oncogene NA NA TCGAFusion -TRIM37--MSI2 BS_R5SNFB5B -0.632725125052435 1.26006959439748 NA NA no change no change NA NA 17:59070823 17:57386377 ARRIBA frameshift 8 0 high [CCLE,INTRACHROMOSOMAL[chr17:1.30Mb]],deletion/5'-5' TRIM37 NA MSI2 NA Oncogene CosmicCensus, Oncogene NA NA TCGAFusion -TRIM46--EFNA3(27760)/Y_RNA(5192) BS_052PZFMK -0.32031322497994 0.331117941482212 NA -0.162236315085263 no change no change NA no change 1:155178598 1:155115298 ARRIBA frameshift 9 0 medium [],duplication TRIM46 NA EFNA3 Y_RNA NA NA NA NA NA -TRIM71--AC122685.1 BS_74FS6GMW 27.3849557907135 NA NA NA differentially expressed NA NA NA 3:32818932 12:55493158 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr3--chr12]],translocation TRIM71 NA AC122685.1 NA NA NA NA NA NA -TRIO--CDH9 BS_B1C6GZ84 2.27878327023543 -1.11413912084661 NA NA differentially expressed no change NA NA 5:14381252 5:27055352 ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr5:12.35Mb]],deletion/5'-5' TRIO NA CDH9 NA Kinase, Oncogene, Kinase NA NA NA NA -TRIO--ELL2 BS_B1C6GZ84 2.27878327023543 0.72278389980231 NA NA differentially expressed no change NA NA 5:14143882 5:95943049 ARRIBA frameshift 11 2 high [INTRACHROMOSOMAL[chr5:81.35Mb]],inversion TRIO NA ELL2 NA Kinase, Oncogene, Kinase NA NA NA NA -TRIP12--BOLL BS_RRAEQZ97 3.58167858509015 18.9153635125716 NA NA differentially expressed differentially expressed NA NA 2:229879982 2:197781865 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr2:31.98Mb]],deletion TRIP12 NA BOLL NA NA NA NA NA NA -TRIP12--BOLL BS_RRAEQZ97 3.58167858509015 18.9153635125716 NA NA differentially expressed differentially expressed NA NA 2:229879982 2:197779066 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:31.98Mb]],deletion TRIP12 NA BOLL NA NA NA NA NA NA -TRIP12--TRIP12 BS_7G42J2SK 3.97663633778724 3.97663633778724 NA NA differentially expressed differentially expressed NA NA 2:229795179 2:229805883 ARRIBA frameshift 52 6 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.16Mb]],duplication/non-canonical_splicing TRIP12 NA TRIP12 NA NA NA NA NA NA -TRIP12--TRIP12 BS_MQCKXD60 3.77736703506213 3.77736703506213 NA NA differentially expressed differentially expressed NA NA 2:229795179 2:229805883 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.16Mb]],duplication/non-canonical_splicing TRIP12 NA TRIP12 NA NA NA NA NA NA -TRIQK--RN7SL318P(38301)/AC007718.1(182363) BS_HZRM07TW -1.06798697640905 -0.0628789005363007 NA NA no change no change NA NA 8:92916929 8:5181008 ARRIBA frameshift 1 0 low [],inversion TRIQK NA RN7SL318P AC007718.1 NA NA NA NA NA -TRIQK--RN7SL318P(53430)/AC007718.1(167234) BS_HZRM07TW -1.06798697640905 -0.0628789005363007 NA NA no change no change NA NA 8:92916929 8:5196137 ARRIBA frameshift 2 0 medium [],inversion TRIQK NA RN7SL318P AC007718.1 NA NA NA NA NA -TRIR--ASNA1 BS_VJ2S5DVS NA -0.0625399941326451 NA NA NA no change NA NA 19:12731344 19:12737804 ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_INVERSION:-:+:[2364]],duplication/5'-5' TRIR NA ASNA1 NA NA NA NA NA NA -TRMT2B--ENOX2 BS_M0QYNVK8 3.9518816647802 0.828603036219809 NA NA differentially expressed no change NA NA X:101041317 X:130656695 ARRIBA in-frame 7 1 high [INTRACHROMOSOMAL[chrX:29.57Mb]],duplication TRMT2B NA ENOX2 NA NA NA NA NA NA -TRMT2B--ENOX2 BS_M0QYNVK8 3.9518816647802 0.828603036219809 NA NA differentially expressed no change NA NA X:101051644 X:130656695 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chrX:29.57Mb]],duplication TRMT2B NA ENOX2 NA NA NA NA NA NA -TRMT2B--ENOX2 BS_M0QYNVK8 3.9518816647802 0.828603036219809 NA NA differentially expressed no change NA NA X:101051251 X:130656695 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chrX:29.57Mb]],duplication TRMT2B NA ENOX2 NA NA NA NA NA NA -TRMT5--AL451105.2(106978)/AC233982.1(18059) BS_6VPKXXMR 5.24459842281335 NA NA NA differentially expressed NA NA NA 14:60979519 X:76011836 ARRIBA frameshift 6 3 medium [],translocation TRMT5 NA AL451105.2 AC233982.1 NA NA NA NA NA -TRMT5--TTC3P1(6697)/MAGEE2(29380) BS_6VPKXXMR 5.24459842281335 6.19363370570679 NA -1.15166486396735 differentially expressed differentially expressed NA no change 14:60980806 X:75753608 ARRIBA frameshift 1 1 medium [],translocation TRMT5 NA TTC3P1 MAGEE2 NA NA NA NA NA -TRMU--RSPH14 BS_49BQS7Z6 -1.1109143277516 0.593147017843672 NA NA no change no change NA NA 22:46357155 22:23136749 ARRIBA frameshift 43 7 medium [INTRACHROMOSOMAL[chr22:23.19Mb]],duplication/5'-5' TRMU NA RSPH14 NA NA NA NA NA NA -TRMU--RSPH14 BS_GXTFW99H -1.00427342960597 -2.31291389292161 NA NA no change differentially expressed NA NA 22:46357155 22:23136749 ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr22:23.19Mb]],duplication/5'-5' TRMU NA RSPH14 NA NA NA NA NA NA -TRPC3--SLC1A2 BS_TNRHHYNC -1.51403155433213 -1.63568407159342 NA NA no change no change NA NA 4:121951552 11:35362302 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr4--chr11]],translocation TRPC3 NA SLC1A2 NA NA NA NA NA NA -TRPC5--TRPC5 BS_N6NE6B3W 9.24231521042006 9.24231521042006 NA NA differentially expressed differentially expressed NA NA X:111834921 X:111854106 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.31Mb]],duplication/non-canonical_splicing TRPC5 NA TRPC5 NA NA NA NA NA NA -TRPC7--TRPC7 BS_61E80SD6 5.26698316496854 5.26698316496854 NA NA differentially expressed differentially expressed NA NA 5:136356608 5:136357385 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.15Mb]],duplication/non-canonical_splicing TRPC7 NA TRPC7 NA NA NA NA NA NA -TRPC7--TRPC7 BS_9M5XJ10G 14.7963504531288 14.7963504531288 NA NA differentially expressed differentially expressed NA NA 5:136356608 5:136357385 ARRIBA frameshift 50 4 low [SELFIE,INTRACHROMOSOMAL[chr5:0.15Mb]],duplication/non-canonical_splicing TRPC7 NA TRPC7 NA NA NA NA NA NA -TRPM3--TRPM3 BS_0X9EGHY2 1.44376317313579 1.44376317313579 NA NA no change no change NA NA 9:70681506 9:70784279 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA -TRPM3--TRPM3 BS_2ADZNNV4 4.3060186003087 4.3060186003087 NA NA differentially expressed differentially expressed NA NA 9:70681506 9:70784279 ARRIBA in-frame 21 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA -TRPM3--TRPM3 BS_5AF6ZNJF 0.0169016730204672 0.0169016730204672 NA NA no change no change NA NA 9:70681506 9:70784279 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA -TRPM3--TRPM3 BS_5VQP0E6K 6.12741837585213 6.12741837585213 NA NA differentially expressed differentially expressed NA NA 9:70827847 9:70864511 ARRIBA frameshift 41 2 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA -TRPM3--TRPM3 BS_69V8P8A0 1.92438297797911 1.92438297797911 NA NA no change no change NA NA 9:70681506 9:70784279 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA -TRPM3--TRPM3 BS_8Q77HZ4R 8.45027632461739 8.45027632461739 NA NA differentially expressed differentially expressed NA NA 9:70681506 9:70784279 ARRIBA in-frame 22 2 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA -TRPM3--TRPM3 BS_AGS1HHGF 8.54298657287985 8.54298657287985 NA NA differentially expressed differentially expressed NA NA 9:70827847 9:70864511 ARRIBA frameshift 39 3 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA -TRPM3--TRPM3 BS_B741RZY9 7.3875327344523 7.3875327344523 NA NA differentially expressed differentially expressed NA NA 9:70681506 9:70784279 ARRIBA in-frame 24 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA -TRPM3--TRPM3 BS_EHVYJAVA 4.08135728270541 4.08135728270541 NA NA differentially expressed differentially expressed NA NA 9:70681506 9:70784279 ARRIBA in-frame 15 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA -TRPM3--TRPM3 BS_F6Z5HFWH 9.12673234768875 9.12673234768875 NA NA differentially expressed differentially expressed NA NA 9:70681506 9:70784279 ARRIBA in-frame 35 2 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA -TRPM3--TRPM3 BS_FAVRBEW7 7.79293493881912 7.79293493881912 NA NA differentially expressed differentially expressed NA NA 9:70827847 9:70864511 ARRIBA frameshift 30 7 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA -TRPM3--TRPM3 BS_K3ER45RV 5.34604889477805 5.34604889477805 NA NA differentially expressed differentially expressed NA NA 9:70827847 9:70864511 ARRIBA frameshift 30 3 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA -TRPM3--TRPM3 BS_N4B1SZZH 5.32591132889608 5.32591132889608 NA NA differentially expressed differentially expressed NA NA 9:70827847 9:70864511 ARRIBA frameshift 33 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA -TRPM3--TRPM3 BS_N6NE6B3W 3.96633126589856 3.96633126589856 NA NA differentially expressed differentially expressed NA NA 9:70681506 9:70784279 ARRIBA in-frame 23 2 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA -TRPM3--TRPM3 BS_NDRDM2A9 2.03532517659972 2.03532517659972 NA NA differentially expressed differentially expressed NA NA 9:70681506 9:70784279 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_2Z1MKS84 5.17538221769728 5.17538221769728 3.40055088529923 NA differentially expressed differentially expressed differentially expressed NA 9:71552539 9:70864511 ARRIBA other 5 2 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_4D9DD103 5.95740273665057 5.95740273665057 5.05318088102892 NA differentially expressed differentially expressed differentially expressed NA 9:71552539 9:70864511 ARRIBA other 32 5 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_4Z2F4P9N -0.781666876225835 -0.781666876225835 2.55113706143676 NA no change no change differentially expressed NA 9:71552539 9:70864511 ARRIBA other 3 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_5AF6ZNJF 0.0169016730204672 0.0169016730204672 5.05318088102892 NA no change no change differentially expressed NA 9:71552539 9:70864511 ARRIBA other 2 0 medium [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_5VQP0E6K 6.12741837585213 6.12741837585213 -0.0967371019719089 NA differentially expressed differentially expressed no change NA 9:71552539 9:70864511 ARRIBA other 13 1 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_6YMJ621P 3.0918202424073 3.0918202424073 3.8193770433843 NA differentially expressed differentially expressed differentially expressed NA 9:71552539 9:70864511 ARRIBA other 4 1 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_77317DY4 7.67383025428088 7.67383025428088 -0.0967371019719089 NA differentially expressed differentially expressed no change NA 9:71552539 9:70864511 ARRIBA other 13 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_9V633J1X 3.64668193301171 3.64668193301171 3.40055088529923 NA differentially expressed differentially expressed differentially expressed NA 9:71552539 9:70864511 ARRIBA other 8 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_CYEY58NY 4.96210943762532 4.96210943762532 2.97782861399778 NA differentially expressed differentially expressed differentially expressed NA 9:71552539 9:70864511 ARRIBA other 5 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_DRD9QXR5 1.44739746412762 1.44739746412762 -0.0967371019719089 NA no change no change no change NA 9:71552539 9:70864511 ARRIBA other 5 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_GR46VD0Q 3.36083738252165 3.36083738252165 -0.0967371019719089 NA differentially expressed differentially expressed no change NA 9:71552539 9:70864511 ARRIBA other 2 0 medium [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_JAEM78XS 2.45978368815716 2.45978368815716 3.8193770433843 NA differentially expressed differentially expressed differentially expressed NA 9:71552539 9:70864511 ARRIBA other 9 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_JTMXAMB7 5.77585841519071 5.77585841519071 -0.0967371019719089 NA differentially expressed differentially expressed no change NA 9:71552539 9:70864511 ARRIBA other 17 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_JZRM1S3T 5.35100153876968 5.35100153876968 10.7647445312054 NA differentially expressed differentially expressed differentially expressed NA 9:71552539 9:70864511 ARRIBA other 5 0 medium [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_K3ER45RV 5.34604889477805 5.34604889477805 -0.0967371019719089 NA differentially expressed differentially expressed no change NA 9:71552539 9:70864511 ARRIBA other 10 1 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_KF0ZXDER 0.00835365707839858 0.00835365707839858 2.97782861399778 NA no change no change differentially expressed NA 9:71552539 9:70864511 ARRIBA other 3 2 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_KXCY5BN5 5.77969167472592 5.77969167472592 3.40055088529923 NA differentially expressed differentially expressed differentially expressed NA 9:71552539 9:70864511 ARRIBA other 3 0 medium [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_M026T44Q 1.47083011869295 1.47083011869295 12.8624546419699 NA no change no change differentially expressed NA 9:71552539 9:70864511 ARRIBA other 5 1 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_M84H3KXA 5.70331377087841 5.70331377087841 -0.0967371019719089 NA differentially expressed differentially expressed no change NA 9:71552539 9:70864511 ARRIBA other 4 1 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_N4B1SZZH 5.32591132889608 5.32591132889608 3.40055088529923 NA differentially expressed differentially expressed differentially expressed NA 9:71552539 9:70864511 ARRIBA other 6 2 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_NKEAAFMW 4.3914613792802 4.3914613792802 5.45711524266043 NA differentially expressed differentially expressed differentially expressed NA 9:71552539 9:70864511 ARRIBA other 3 0 medium [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_Q2T9ZRM0 -0.91748851424936 -0.91748851424936 1.68554295737083 NA no change no change no change NA 9:71552539 9:70864511 ARRIBA other 2 0 medium [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_R6WNEEE4 3.5527561868192 3.5527561868192 23.2071564241755 NA differentially expressed differentially expressed differentially expressed NA 9:71552539 9:70864511 ARRIBA other 3 0 medium [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_X9EGD530 0.091932456303358 0.091932456303358 -0.0967371019719089 NA no change no change no change NA 9:71552539 9:70864511 ARRIBA other 3 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_YETBN0RQ 5.65230874536029 5.65230874536029 6.64781174128936 NA differentially expressed differentially expressed differentially expressed NA 9:71552539 9:70864511 ARRIBA other 8 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_ZWR9W4FX 0.660312859113947 0.660312859113947 -0.0967371019719089 NA no change no change no change NA 9:71552539 9:70864511 ARRIBA other 3 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA -TRPM7--TRPM7 BS_CZ3NA7KV 1.87190602505046 1.87190602505046 NA NA no change no change NA NA 15:50589592 15:50609961 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing TRPM7 NA TRPM7 NA Kinase Kinase NA NA NA -TRPM8--TRPM8 BS_S7CZY2CH 46.9146008223986 46.9146008223986 NA NA differentially expressed differentially expressed NA NA 2:233966755 2:233937353 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing TRPM8 NA TRPM8 NA NA NA NA NA NA -TRPM8--TRPM8 BS_SDA4RMMG 28.1819495020847 28.1819495020847 NA NA differentially expressed differentially expressed NA NA 2:233966755 2:233937353 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing TRPM8 NA TRPM8 NA NA NA NA NA NA -TRRAP--NPM1P14(52460)/AC002463.1(48248) BS_84XCR9GG 3.30112155056111 -0.108773992844755 NA NA differentially expressed no change NA NA 7:98949841 7:112574130 ARRIBA frameshift 9 2 high [],deletion TRRAP NA NPM1P14 AC002463.1 Kinase, CosmicCensus, Kinase NA NA NA NA -TRRAP--NRXN3 BS_ZV1P6W9C 2.45284789594628 -1.05918366122826 NA NA differentially expressed no change NA NA 7:98994848 14:79467221 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr7--chr14]],translocation TRRAP NA NRXN3 NA Kinase, CosmicCensus, Kinase NA NA NA NA -TRRAP--RABGEF1 BS_4QW2S1Q8 3.25560326761459 0.337533976249551 NA NA differentially expressed no change NA NA 7:99008561 7:66700769 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr7:32.07Mb]],duplication TRRAP NA RABGEF1 NA Kinase, CosmicCensus, Kinase NA NA NA NA -TRRAP--RABGEF1 BS_4QW2S1Q8 3.25560326761459 0.337533976249551 NA NA differentially expressed no change NA NA 7:99008561 7:66712167 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:32.07Mb]],duplication TRRAP NA RABGEF1 NA Kinase, CosmicCensus, Kinase NA NA NA NA -TRRAP--RABGEF1 BS_4QW2S1Q8 3.25560326761459 0.337533976249551 NA NA differentially expressed no change NA NA 7:99008561 7:66700769 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:32.07Mb]],duplication TRRAP NA RABGEF1 NA Kinase, CosmicCensus, Kinase NA NA NA NA -TRUB1(467)/AL355340.1(16514)--TRUB1 BS_K7MVS0Z7 0.832560589795694 0.832560589795694 NA NA no change no change NA NA 10:114978143 10:114970368 ARRIBA other 5 0 medium [],duplication TRUB1 AL355340.1 TRUB1 NA NA NA NA NA NA -TSC1--MIR4291(9812)/AL442224.1(27850) BS_BKQZ550R -0.930405126348602 NA NA NA no change NA NA NA 9:132944572 9:93829233 ARRIBA other 5 0 low [],deletion TSC1 NA MIR4291 AL442224.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -TSC22D1--P2RY14 BS_NJ4WPQVK -4.09614158807687 -0.747117143428074 NA NA differentially expressed no change NA NA 13:44573163 3:151278476 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr13--chr3]],translocation TSC22D1 NA P2RY14 NA TumorSuppressorGene, TranscriptionFactor Oncogene NA NA NA -TSEN2--BCAS1 BS_401R3KV0 0.402961993117794 -1.13608301185825 NA NA no change no change NA NA 3:12505231 20:53967073 ARRIBA in-frame 12 1 high [INTERCHROMOSOMAL[chr3--chr20]],translocation TSEN2 NA BCAS1 NA NA NA NA NA NA -TSEN2--BCAS1 BS_401R3KV0 0.402961993117794 -1.13608301185825 NA NA no change no change NA NA 3:12505231 20:53953695 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr3--chr20]],translocation TSEN2 NA BCAS1 NA NA NA NA NA NA -TSEN2--BCAS1 BS_401R3KV0 0.402961993117794 -1.13608301185825 NA NA no change no change NA NA 3:12503784 20:53967073 ARRIBA in-frame 1 1 medium [INTERCHROMOSOMAL[chr3--chr20]],translocation TSEN2 NA BCAS1 NA NA NA NA NA NA -TSFM--OS9 BS_7327SDAQ 5.95584340354429 6.07257726131102 NA NA differentially expressed differentially expressed NA NA 12:57787162 12:57715760 ARRIBA in-frame 423 49 high [FA_CancerSupp,INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_REARRANGEMENT:+:[61032]],duplication TSFM NA OS9 NA NA NA NA NA NA -TSGA10--TSGA10 BS_0BXY0F9N 1.74436944071465 1.74436944071465 NA NA no change no change NA NA 2:99064939 2:99078813 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.16Mb]],duplication/non-canonical_splicing TSGA10 NA TSGA10 NA NA NA NA NA NA -TSGA10--TSGA10 BS_7G42J2SK 3.13827081651173 3.13827081651173 NA NA differentially expressed differentially expressed NA NA 2:99105359 2:99110915 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.16Mb]],duplication/non-canonical_splicing TSGA10 NA TSGA10 NA NA NA NA NA NA -TSPAN12--MET BS_6DCSD5Y6 16.9166431867035 12.480730303402 NA NA differentially expressed differentially expressed NA NA 7:120856698 7:116739950 ARRIBA in-frame 536 31 high [INTRACHROMOSOMAL[chr7:3.99Mb]],inversion TSPAN12 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -TSPAN12--MET(10694)/CAPZA2(1990) BS_6DCSD5Y6 16.9166431867035 12.480730303402 NA -0.109114763795844 differentially expressed differentially expressed NA no change 7:120856698 7:116809080 ARRIBA frameshift 52 0 high [],inversion TSPAN12 NA MET CAPZA2 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -TSPAN13--SP4 BS_HX0S30NE -1.02070301121232 1.27803640853296 NA NA no change no change NA NA 7:16754030 7:21477079 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr7:4.64Mb]],deletion TSPAN13 NA SP4 NA TumorSuppressorGene TranscriptionFactor NA NA NA -TSPAN18--EXT2 BS_10APZRVT 2.80283305205756 4.90032481958099 NA NA differentially expressed differentially expressed NA NA 11:44764512 11:44107683 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr11:0.48Mb]],duplication TSPAN18 NA EXT2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -TSPAN5--TSPAN5 BS_YY5B2XDD -1.31912446983546 -1.31912446983546 NA NA no change no change NA NA 4:98574457 4:98574905 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.19Mb]],duplication/non-canonical_splicing TSPAN5 NA TSPAN5 NA NA NA NA NA NA -TSPAN7--PUDP(50481)/STS(20785) BS_FCAKKZ20 -1.81590278364201 NA NA -1.21938641770062 no change NA NA no change X:38561627 X:7198671 ARRIBA frameshift 8 0 medium [],inversion TSPAN7 NA PUDP STS NA NA NA NA NA -TSPAN9--AC125807.2(14027)/AC125807.1(12555) BS_K81DR8XG 1.89541231891218 NA NA NA no change NA NA NA 12:3206418 12:3058977 ARRIBA frameshift 1 2 high [],duplication TSPAN9 NA AC125807.2 AC125807.1 NA NA NA NA NA -TTC12--NXPE2(47123)/ACA59(374162) BS_SXCZ3CXN 3.16200986567517 0.138003857747283 NA -0.388093898930214 differentially expressed no change NA no change 11:113341925 11:114754056 ARRIBA frameshift 18 1 high [],inversion TTC12 NA NXPE2 ACA59 NA NA NA NA NA -TTC19--ZBTB4 BS_23QW0BBA 0.536131738779444 0.18866176548857 NA NA no change no change NA NA 17:16006568 17:7467327 ARRIBA frameshift 9 2 high [INTRACHROMOSOMAL[chr17:8.52Mb]],inversion TTC19 NA ZBTB4 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -TTC21B--AC097662.2(38501)/MIR5703(45682) BS_RRAEQZ97 0.223273330688358 -2.80802924165051 NA NA no change differentially expressed NA NA 2:165945524 2:227426450 ARRIBA frameshift 1 1 high [],inversion TTC21B NA AC097662.2 MIR5703 NA NA NA NA NA -TTC25--HOXB-AS4 BS_MN5XVP5A 2.09230309938121 69.7507793621514 NA NA differentially expressed differentially expressed NA NA 17:41949349 17:48634551 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr17:6.66Mb]],deletion TTC25 NA HOXB-AS4 NA NA NA NA NA NA -TTC25--HOXB-AS4 BS_MN5XVP5A 2.09230309938121 69.7507793621514 NA NA differentially expressed differentially expressed NA NA 17:41955317 17:48634551 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:6.66Mb]],deletion TTC25 NA HOXB-AS4 NA NA NA NA NA NA -TTC27--LINC01823(1027052)/AC062020.1(241567) BS_1D6PZNKN 3.82829973957379 NA NA -0.0610228709485396 differentially expressed NA NA no change 2:32702920 2:122823754 ARRIBA frameshift 3 0 high [],deletion TTC27 NA LINC01823 AC062020.1 NA NA NA NA NA -TTC28--PARD3-AS1(34053)/SS18L2P1(24771) BS_KZPR01BD 9.67733489278879 -0.261550600782046 NA NA differentially expressed no change NA NA 22:28296198 10:34850439 ARRIBA frameshift 14 0 high [],translocation TTC28 NA PARD3-AS1 SS18L2P1 NA NA NA NA NA -TTC29--TTC29 BS_WRQHPSXQ 1.7172656949006 1.7172656949006 NA NA no change no change NA NA 4:146803457 4:146909249 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.24Mb]],duplication/non-canonical_splicing TTC29 NA TTC29 NA NA NA NA NA NA -TTC39B--TTC39B BS_NT9NZYFD -0.273160194923072 -0.273160194923072 NA NA no change no change NA NA 9:15199861 9:15226012 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing TTC39B NA TTC39B NA Oncogene Oncogene NA NA NA -TTC39B--TTC39B BS_TG93XC55 0.879481158557882 0.879481158557882 NA NA no change no change NA NA 9:15203823 9:15226012 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing TTC39B NA TTC39B NA Oncogene Oncogene NA NA NA -TTC6--TTC6 BS_B741RZY9 5.14921780494928 5.14921780494928 NA NA differentially expressed differentially expressed NA NA 14:37968588 14:37874460 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA -TTC6--TTC6 BS_M1T1K5WV 5.10217233026112 5.10217233026112 NA NA differentially expressed differentially expressed NA NA 14:37701526 14:37680151 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA -TTC6--TTC6 BS_SAA624A4 6.08918233575984 6.08918233575984 NA NA differentially expressed differentially expressed NA NA 14:37701526 14:37680151 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA -TTC6--TTC6 BS_SDCNP7MW 5.04760409442878 5.04760409442878 NA NA differentially expressed differentially expressed NA NA 14:37968588 14:37936234 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA -TTC6--TTC6 BS_TBWYAFSM 8.96046887768729 8.96046887768729 NA NA differentially expressed differentially expressed NA NA 14:37701526 14:37680151 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA -TTC6--TTC6 BS_TNRHHYNC 8.85784636818081 8.85784636818081 NA NA differentially expressed differentially expressed NA NA 14:37701526 14:37680151 ARRIBA frameshift 16 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA -TTC6--TTC6 BS_W4HGV6E7 6.36223931448619 6.36223931448619 NA NA differentially expressed differentially expressed NA NA 14:37701526 14:37680151 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA -TTC6--TTC6 BS_X67GTEM6 5.79249959250146 5.79249959250146 NA NA differentially expressed differentially expressed NA NA 14:37701526 14:37680151 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA -TTC6--TTC6 BS_YE1MAQYJ 7.74396489696556 7.74396489696556 NA NA differentially expressed differentially expressed NA NA 14:37701526 14:37680151 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA -TTC7B--TTC7B BS_C05FKR8X -0.151726435214942 -0.151726435214942 NA NA no change no change NA NA 14:90578106 14:90786328 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.29Mb]],duplication/non-canonical_splicing TTC7B NA TTC7B NA NA NA NA NA NA -TTF1--NUP188 BS_EJ9JKM1C -2.83268716065402 0.311177362182219 NA NA differentially expressed no change NA NA 9:132406790 9:129006239 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr9:3.37Mb]],inversion TTF1 NA NUP188 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA -TTF1--NUP188 BS_YB07VF1X -2.02368664218302 0.353012572271369 NA NA differentially expressed no change NA NA 9:132403828 9:129006239 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr9:3.37Mb]],inversion TTF1 NA NUP188 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA -TTLL5--TTLL5 BS_398KYV92 1.01321588028934 1.01321588028934 NA NA no change no change NA NA 14:75820161 14:75764615 ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.32Mb]],duplication/non-canonical_splicing TTLL5 NA TTLL5 NA NA NA NA NA NA -TTTY14--SRIP3(40400)/AC013412.1(29573) BS_W644VEVE -0.813212063559666 11.1617187999602 NA NA no change differentially expressed NA NA Y:19041370 Y:6759580 ARRIBA other 1 1 medium [],inversion TTTY14 NA SRIP3 AC013412.1 NA NA NA NA NA -TTYH1--DPRX(13215)/RNU6-698P(3461) BS_N6N147BY -0.0485854080728933 -0.460183734543786 NA NA no change no change NA NA 19:54436158 19:53650224 ARRIBA frameshift 63 22 high [],duplication TTYH1 NA DPRX RNU6-698P Oncogene TranscriptionFactor NA NA NA -TTYH1--DPRX(5230)/RNU6-698P(11446) BS_QWNBZ9RJ 0.223060982246283 -0.260931367825278 NA NA no change no change NA NA 19:54422410 19:53642239 ARRIBA frameshift 44 2 high [],duplication TTYH1 NA DPRX RNU6-698P Oncogene TranscriptionFactor NA NA NA -TTYH1--MIR512-2(1329)/MIR1323(1385) BS_37GTVG4N -0.0670729259556552 NA NA NA no change NA NA NA 19:54426768 19:53670583 ARRIBA frameshift 7 4 medium [],duplication TTYH1 NA MIR512-2 MIR1323 Oncogene NA NA NA NA -TTYH1--MIR512-2(1329)/MIR1323(1385) BS_P39SQPTS 0.153946753059526 NA NA NA no change NA NA NA 19:54422410 19:53670583 ARRIBA frameshift 9 0 medium [],duplication TTYH1 NA MIR512-2 MIR1323 Oncogene NA NA NA NA -TTYH1--MIR515-2(1075)/MIR519C(303) BS_37GTVG4N -0.0670729259556552 NA NA NA no change NA NA NA 19:54426768 19:53686166 ARRIBA frameshift 5 0 medium [],duplication TTYH1 NA MIR515-2 MIR519C Oncogene NA NA NA NA -TUBGCP2--AL360181.3 BS_RCCN63K6 -0.878865773802953 NA NA NA no change NA NA NA 10:133302792 10:133395713 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr10:0.08Mb],LOCAL_INVERSION:-:+:[78497]],inversion TUBGCP2 NA AL360181.3 NA NA NA NA NA NA -TUBGCP2--MTG1 BS_RCCN63K6 -0.878865773802953 0.723872187841407 NA NA no change no change NA NA 10:133302792 10:133395713 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr10:0.08Mb],LOCAL_INVERSION:-:+:[81757]],inversion TUBGCP2 NA MTG1 NA NA NA NA NA NA -TUBGCP2--MTG1 BS_RCCN63K6 -0.878865773802953 0.723872187841407 NA NA no change no change NA NA 10:133302792 10:133402149 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr10:0.08Mb],LOCAL_INVERSION:-:+:[81757]],inversion TUBGCP2 NA MTG1 NA NA NA NA NA NA -TUBGCP6--HDAC10 BS_49FQXT2E -1.42556130930427 -0.676137751237734 NA NA no change no change NA NA 22:50233316 22:50246966 ARRIBA in-frame 20 1 high [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[191]],duplication TUBGCP6 NA HDAC10 NA NA NA NA NA NA -TUBGCP6--MAPK12 BS_49FQXT2E -1.42556130930427 -1.50682613813906 NA NA no change no change NA NA 22:50233316 22:50246966 ARRIBA frameshift 13 0 high [CCLE,INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[458]],duplication TUBGCP6 NA MAPK12 NA NA Oncogene, Kinase NA NA NA -TUFT1--NIPAL3 BS_TRKH2SPE -0.569233204273331 -0.892606069449729 NA NA no change no change NA NA 1:151540426 1:24456138 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr1:127.07Mb]],duplication TUFT1 NA NIPAL3 NA NA NA NA NA NA -TVP23B--CDRT4 BS_61E80SD6 1.95762619829354 0.0198982216281917 NA NA no change no change NA NA 17:18804266 17:15440285 ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA -TVP23B--CDRT4 BS_66HQ3E4Z -0.480483601346645 -2.44200364214318 NA NA no change differentially expressed NA NA 17:18804266 17:15440285 ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA -TVP23B--CDRT4 BS_6JHXXVR7 0.417751815551835 -2.94875333632324 NA NA no change differentially expressed NA NA 17:18804266 17:15440285 ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA -TVP23B--CDRT4 BS_7327SDAQ 0.306852919548564 -2.90092808919928 NA NA no change differentially expressed NA NA 17:18804266 17:15440285 ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA -TVP23B--CDRT4 BS_9M5XJ10G 0.443376758892409 -1.19381950584443 NA NA no change no change NA NA 17:18804266 17:15440285 ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA -TVP23B--CDRT4 BS_G7AGNB5G -0.364115753272319 -0.885626650470063 NA NA no change no change NA NA 17:18804266 17:15440285 ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA -TVP23B--CDRT4 BS_SXCZ3CXN 1.65889896823829 -2.71018494890252 NA NA no change differentially expressed NA NA 17:18804266 17:15440285 ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA -TVP23B--CDRT4 BS_TDEFAPNH 0.702844075675687 -1.97655415799488 NA NA no change no change NA NA 17:18804266 17:15440285 ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA -TVP23B--CDRT4 BS_VNWKNRY4 0.374507195119978 -2.0578933768465 NA NA no change differentially expressed NA NA 17:18804266 17:15440285 ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA -TVP23B--CDRT4 BS_XJTW0P8P -1.33790044394792 -2.1193295675919 NA NA no change differentially expressed NA NA 17:18804266 17:15440285 ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA -TWF1--AL121748.2 BS_A0DYVX9J 2.76694528119332 NA NA NA differentially expressed NA NA NA 12:43796976 10:33211268 ARRIBA frameshift 3 2 high [INTERCHROMOSOMAL[chr12--chr10]],translocation TWF1 NA AL121748.2 NA NA NA NA NA NA -TWF1--AL121748.2 BS_A0DYVX9J 2.76694528119332 NA NA NA differentially expressed NA NA NA 12:43796976 10:33213238 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr10]],translocation TWF1 NA AL121748.2 NA NA NA NA NA NA -TXLNG--ERAS BS_FCAKKZ20 1.7984964383662 7.43877890907587 NA NA no change differentially expressed NA NA X:16786589 X:48829081 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chrX:31.98Mb]],deletion TXLNG NA ERAS NA NA Oncogene NA NA NA -TXNDC16--TXNDC16 BS_69V8P8A0 -0.810577343949867 -0.810577343949867 NA NA no change no change NA NA 14:52439204 14:52457174 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing TXNDC16 NA TXNDC16 NA NA NA NA NA NA -TXNL1--TCF4 BS_1EBQ3T20 1.75997436278541 4.86925443513667 NA NA no change differentially expressed NA NA 18:56638343 18:55587136 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr18:0.93Mb]],deletion TXNL1 NA TCF4 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -TYW1--LAMB1 BS_4QW2S1Q8 2.32166722435164 1.6051245716527 NA NA differentially expressed no change NA NA 7:67018143 7:107961676 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr7:40.68Mb]],inversion TYW1 NA LAMB1 NA NA NA NA NA NA -TYW1B--DGKI BS_6WP1FHTE -0.219530400833373 2.15881778704958 NA NA no change differentially expressed NA NA 7:72815380 7:137412207 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr7:64.55Mb]],duplication TYW1B NA DGKI NA NA NA NA NA NA -TYW1B--TYW1B BS_ZN8136D9 6.1086857139848 6.1086857139848 NA NA differentially expressed differentially expressed NA NA 7:72616672 7:72713798 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.27Mb]],duplication/non-canonical_splicing TYW1B NA TYW1B NA NA NA NA NA NA -UAP1(1672)/DDR2(29859)--UAP1 BS_YEQVW4ND 0.350843751203878 0.350843751203878 4.43174328296778 NA no change no change differentially expressed NA 1:162601514 1:162576777 ARRIBA other 3 0 high [],duplication UAP1 DDR2 UAP1 NA NA NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA -UBA2--AL158198.1 BS_NJ4WPQVK 2.20407138395462 NA NA NA differentially expressed NA NA NA 19:34467014 6:20291975 ARRIBA frameshift 6 1 medium [INTERCHROMOSOMAL[chr19--chr6]],translocation/5'-5' UBA2 NA AL158198.1 NA NA NA NA NA NA -UBA3--ROBO2 BS_FAQQ0GCQ -0.442536729460711 -0.45070281922893 NA NA no change no change NA NA 3:69062982 3:77477414 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:6.83Mb]],inversion UBA3 NA ROBO2 NA NA CosmicCensus NA NA NA -UBAP2--AC092648.1(119395)/AC092637.1(130390) BS_4QW2S1Q8 1.37406627990912 NA NA NA no change NA NA NA 9:33926989 7:67889863 ARRIBA frameshift 2 0 medium [],translocation UBAP2 NA AC092648.1 AC092637.1 NA NA NA NA NA -UBAP2--GRM8 BS_4QW2S1Q8 1.37406627990912 0.17207704448028 NA NA no change no change NA NA 9:33926989 7:126772179 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr9--chr7]],translocation/5'-5' UBAP2 NA GRM8 NA NA NA NA NA NA -UBE2D2--CDC23 BS_51RA1PGE -0.398585560211234 1.45624135832943 NA NA no change no change NA NA 5:139561815 5:138206684 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr5:1.31Mb]],inversion UBE2D2 NA CDC23 NA Oncogene NA NA NA NA -UBE2D2--CDC23 BS_51RA1PGE -0.398585560211234 1.45624135832943 NA NA no change no change NA NA 5:139561815 5:138213063 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr5:1.31Mb]],inversion UBE2D2 NA CDC23 NA Oncogene NA NA NA NA -UBE2D2--DPYSL3(48385)/JAKMIP2-AS1(1553) BS_51RA1PGE -0.398585560211234 0.815724752429675 NA 1.93631854927032 no change no change NA no change 5:139561815 5:147558441 ARRIBA frameshift 20 0 high [],deletion UBE2D2 NA DPYSL3 JAKMIP2-AS1 Oncogene NA NA NA NA -UBE2E1--SNORD77(9686)/ALS2CL(8721) BS_81SP2HX4 -2.39127936109367 NA NA -1.74238618435748 differentially expressed NA NA no change 3:23811510 3:46660276 ARRIBA frameshift 4 0 high [],inversion UBE2E1 NA SNORD77 ALS2CL NA NA NA Oncogene NA -UBE2E2--AC063952.1 BS_FAQQ0GCQ -0.826696984592223 NA NA NA no change NA NA NA 3:23217312 3:120367801 ARRIBA frameshift 2 2 high [INTRACHROMOSOMAL[chr3:96.76Mb]],deletion UBE2E2 NA AC063952.1 NA NA NA NA NA NA -UBE2E2--SOX5 BS_40MP5BWR -0.965336318700493 6.77701670487605 NA NA no change differentially expressed NA NA 3:23217312 12:23908207 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr3--chr12]],translocation/5'-5' UBE2E2 NA SOX5 NA NA Oncogene, TranscriptionFactor NA NA NA -UBE2E2--SOX5(29716)/MIR920(231673) BS_40MP5BWR -0.965336318700493 6.77701670487605 NA NA no change differentially expressed NA NA 3:23217312 12:23980748 ARRIBA frameshift 4 0 high [],translocation UBE2E2 NA SOX5 MIR920 NA Oncogene, TranscriptionFactor NA NA NA -UBE2G1--COX10-AS1 BS_23QW0BBA 1.10002810585885 5.63727519685022 NA NA no change differentially expressed NA NA 17:4307021 17:13777349 ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr17:9.39Mb]],duplication UBE2G1 NA COX10-AS1 NA NA NA NA NA NA -UBE2G1--ZZEF1 BS_VNK9XYV9 0.71502661632878 1.71468024079847 NA NA no change no change NA NA 17:4366271 17:4018293 ARRIBA frameshift 2 1 high [CCLE,Klijn_CellLines,INTRACHROMOSOMAL[chr17:0.13Mb]],inversion/5'-5' UBE2G1 NA ZZEF1 NA NA NA NA NA NA -UBE2H--CHCHD3 BS_V3Z3DB4N 1.47146647801111 2.6661612315675 NA NA no change differentially expressed NA NA 7:129937615 7:133024627 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:2.83Mb]],duplication UBE2H NA CHCHD3 NA NA TranscriptionFactor NA NA NA -UBE2J2--HFM1(13643)/CDC7(82381) BS_WKESC3XN 2.81541198317728 -0.532310559227602 NA -0.00530015929314185 differentially expressed no change NA no change 1:1256992 1:91418512 ARRIBA frameshift 3 0 medium [],inversion UBE2J2 NA HFM1 CDC7 NA NA NA Kinase, Kinase NA -UBE2Q1--FAXDC2 BS_KP735TJ6 -0.560351892572074 0.936243794600565 NA NA no change no change NA NA 1:154552735 5:154840651 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr1--chr5]],translocation UBE2Q1 NA FAXDC2 NA NA NA NA NA NA -UBE2Q2P2--AC026951.1 BS_51RA1PGE 1.48866663496785 NA NA NA no change NA NA NA 15:82400716 15:31766111 ARRIBA other 9 0 high [INTRACHROMOSOMAL[chr15:50.59Mb]],duplication/5'-5' UBE2Q2P2 NA AC026951.1 NA NA NA NA NA NA -UBE2R2--AC004870.3(24888)/TNS3(171138) BS_4QW2S1Q8 0.681485538756286 NA NA 0.0575453622611787 no change NA NA no change 9:33912098 7:47104016 ARRIBA frameshift 10 0 high [],translocation UBE2R2 NA AC004870.3 TNS3 NA NA NA NA NA -UBE2R2--AC004870.3(24888)/TNS3(171138) BS_MX23ZY0Y 1.20259195943778 NA NA -0.361592708980693 no change NA NA no change 9:33912098 7:47104016 ARRIBA frameshift 8 0 high [],translocation UBE2R2 NA AC004870.3 TNS3 NA NA NA NA NA -UBE2R2--AC004870.3(24888)/TNS3(171138) BS_P9JP6JFA 0.246531463004019 NA NA 2.08215067666704 no change NA NA differentially expressed 9:33912098 7:47104016 ARRIBA frameshift 3 0 medium [],translocation UBE2R2 NA AC004870.3 TNS3 NA NA NA NA NA -UBE2R2--AC004870.3(58080)/TNS3(137946) BS_4QW2S1Q8 0.681485538756286 NA NA 0.0575453622611787 no change NA NA no change 9:33912098 7:47137208 ARRIBA frameshift 2 1 medium [],translocation UBE2R2 NA AC004870.3 TNS3 NA NA NA NA NA -UBE3C--EXOC4 BS_7GJT4A6A 2.41965584106165 4.03308592038427 NA NA differentially expressed differentially expressed NA NA 7:157139338 7:133475328 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:23.07Mb]],duplication UBE3C NA EXOC4 NA NA Oncogene NA NA NA -UBE4B--UBE4B BS_7G42J2SK -0.313051063972169 -0.313051063972169 NA NA no change no change NA NA 1:10137205 1:10129392 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing UBE4B NA UBE4B NA TumorSuppressorGene TumorSuppressorGene NA NA NA -UBIAD1--LINC01135 BS_RCCN63K6 4.00178122371545 1.00749334328474 NA NA differentially expressed no change NA NA 1:11274060 1:58893545 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr1:47.49Mb]],deletion UBIAD1 NA LINC01135 NA TumorSuppressorGene NA NA NA NA -UBIAD1--LINC01358 BS_RCCN63K6 4.00178122371545 1.53153240405155 NA NA differentially expressed no change NA NA 1:11274060 1:58953859 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:47.64Mb]],deletion UBIAD1 NA LINC01358 NA TumorSuppressorGene NA NA NA NA -UBN2--AC079791.1(210953)/LINC02476(314454) BS_NT9NZYFD 1.12679202530782 NA NA NA no change NA NA NA 7:139279360 7:119390102 ARRIBA frameshift 4 1 high [],duplication UBN2 NA AC079791.1 LINC02476 NA NA NA NA NA -UBN2--SCN2A BS_052PZFMK 1.57078791460142 -1.06519378354769 NA NA no change no change NA NA 7:139231952 2:165295773 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr7--chr2]],translocation UBN2 NA SCN2A NA NA NA NA NA NA -UBR1--UBR1 BS_CXVJK2FY 3.08960794368071 3.08960794368071 NA NA differentially expressed differentially expressed NA NA 15:43024829 15:43048491 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.16Mb]],duplication/non-canonical_splicing UBR1 NA UBR1 NA NA NA NA NA NA -UBR3--SCN2A BS_RRAEQZ97 0.110889773030735 -0.20257018133108 NA NA no change no change NA NA 2:169828052 2:165295773 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr2:4.44Mb]],duplication UBR3 NA SCN2A NA NA NA NA NA NA -UBR3--SCN2A BS_RRAEQZ97 0.110889773030735 -0.20257018133108 NA NA no change no change NA NA 2:169828052 2:165295880 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr2:4.44Mb]],duplication UBR3 NA SCN2A NA NA NA NA NA NA -UBR5--UBR5 BS_7G42J2SK 0.643267659597317 0.643267659597317 NA NA no change no change NA NA 8:102304043 8:102347092 ARRIBA in-frame 15 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.16Mb]],duplication/non-canonical_splicing UBR5 NA UBR5 NA CosmicCensus CosmicCensus NA NA NA -UBXN7--CYS1 BS_5CTVXVRX 0.697024401950012 -2.29943839472262 NA NA no change differentially expressed NA NA 3:196391813 2:10071646 ARRIBA frameshift 4 3 high [INTERCHROMOSOMAL[chr3--chr2]],translocation/5'-5' UBXN7 NA CYS1 NA NA NA NA NA NA -UBXN7--CYS1 BS_8ZS9F31R 0.791441187790964 -2.71458088165956 NA NA no change differentially expressed NA NA 3:196391813 2:10074030 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr3--chr2]],translocation/5'-5' UBXN7 NA CYS1 NA NA NA NA NA NA -UBXN7--PPM1L BS_1XJ73KBQ 3.35565991551536 0.284374098381274 NA NA differentially expressed no change NA NA 3:196392097 3:160921626 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr3:35.27Mb]],deletion/5'-5' UBXN7 NA PPM1L NA NA TumorSuppressorGene NA NA NA -UBXN8--AL590824.1(168747)/FAM46A(765503) BS_7ZV3DPGT -0.0218192645212216 NA NA -1.08438985882788 no change NA NA no change 8:30756887 6:80725936 ARRIBA frameshift 3 1 high [],translocation UBXN8 NA AL590824.1 FAM46A NA NA NA NA NA -UBXN8--AL590824.1(168747)/FAM46A(765503) BS_M7QJ8VF0 0.021883301036684 NA NA -0.0203501310637656 no change NA NA no change 8:30756887 6:80725936 ARRIBA frameshift 2 0 high [],translocation UBXN8 NA AL590824.1 FAM46A NA NA NA NA NA -uc_338(8666)/PKN2-AS1(8677)--PKN2-AS1 BS_7BTZQKYY 4.33755030680252 1.35585552503128 1.35585552503128 NA differentially expressed no change no change NA 1:88528836 1:88570859 ARRIBA other 2 2 medium [],duplication uc_338 PKN2-AS1 PKN2-AS1 NA NA NA NA NA NA -uc_338(8666)/PKN2-AS1(8677)--PKN2-AS1 BS_TG93XC55 3.63072498363814 1.30019969922098 1.30019969922098 NA differentially expressed no change no change NA 1:88528836 1:88570859 ARRIBA other 2 1 medium [],duplication uc_338 PKN2-AS1 PKN2-AS1 NA NA NA NA NA NA -uc_338(8666)/PKN2-AS1(8677)--PKN2-AS1 BS_VNE0ZPBS 3.26345168767044 3.43158383393636 3.43158383393636 NA differentially expressed differentially expressed differentially expressed NA 1:88528836 1:88570859 ARRIBA other 3 1 medium [],duplication uc_338 PKN2-AS1 PKN2-AS1 NA NA NA NA NA NA -UCK2--RABGAP1L BS_W60RQAKK 0.879934440171543 0.296532351279467 NA NA no change no change NA NA 1:165827932 1:174231145 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr1:8.25Mb]],deletion UCK2 NA RABGAP1L NA NA Oncogene NA NA NA -UCK2--RABGAP1L BS_W60RQAKK 0.879934440171543 0.296532351279467 NA NA no change no change NA NA 1:165827932 1:174241483 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:8.25Mb]],deletion UCK2 NA RABGAP1L NA NA Oncogene NA NA NA -UGDH-AS1--UPF1 BS_YB07VF1X 0.862703704410299 0.18235419674252 NA NA no change no change NA NA 4:39532130 19:18850075 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr4--chr19]],translocation UGDH-AS1 NA UPF1 NA NA NA NA NA NA -UGGT2--UGGT2 BS_7G42J2SK 0.528476371432044 0.528476371432044 NA NA no change no change NA NA 13:95863629 13:95895304 ARRIBA frameshift 13 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr13:0.25Mb]],duplication/non-canonical_splicing UGGT2 NA UGGT2 NA NA NA NA NA NA -UGT8(14920)/CIR1P2(20435)--UGT8 BS_N6NE6B3W -0.252917149338049 -0.252917149338049 -0.449744478715601 NA no change no change no change NA 4:114693144 4:114619423 ARRIBA other 3 0 medium [],duplication UGT8 CIR1P2 UGT8 NA NA NA NA NA NA -UHMK1--AL592295.3(22932)/FCGR2A(11975) BS_C41DJZ1F 0.197872881635349 NA NA 2.53984276341864 no change NA NA differentially expressed 1:162518190 1:161493455 ARRIBA frameshift 2 0 high [],duplication UHMK1 NA AL592295.3 FCGR2A Kinase NA NA NA NA -UHRF2--GLDC BS_92MT680S -1.3804355694336 -1.09551610763137 NA NA no change no change NA NA 9:6413643 9:6536236 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.03Mb],LOCAL_INVERSION:+:-:[25410]],inversion UHRF2 NA GLDC NA TumorSuppressorGene, Oncogene NA NA NA NA -ULK4--GRID2 BS_HZ707C55 6.92881077470304 1.48971247384477 NA NA differentially expressed no change NA NA 3:41907845 4:93084995 ARRIBA frameshift 6 1 high [INTERCHROMOSOMAL[chr3--chr4]],translocation ULK4 NA GRID2 NA Kinase, Kinase NA NA NA NA -ULK4--ULK4 BS_J483EMFP 5.98111705434033 5.98111705434033 NA NA differentially expressed differentially expressed NA NA 3:41514940 3:41935940 ARRIBA other 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr3:0.72Mb]],duplication ULK4 NA ULK4 NA Kinase, Kinase Kinase, Kinase NA NA NA -UNC5B--GRID1 BS_84XCR9GG 0.564494152269343 -2.00161011406602 NA NA no change differentially expressed NA NA 10:71213064 10:85787513 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr10:14.30Mb]],deletion/5'-5' UNC5B NA GRID1 NA TumorSuppressorGene NA NA NA NA -UNC5C--GRIA2 BS_GE2RVZE6 1.82403983992763 -0.388313348015945 NA NA no change no change NA NA 4:95548734 4:157221667 ARRIBA in-frame 33 8 high [INTRACHROMOSOMAL[chr4:61.65Mb]],inversion UNC5C NA GRIA2 NA TumorSuppressorGene NA NA NA NA -UNC5C--GRIA2 BS_GE2RVZE6 1.82403983992763 -0.388313348015945 NA NA no change no change NA NA 4:95548734 4:157303552 ARRIBA in-frame 1 2 high [INTRACHROMOSOMAL[chr4:61.65Mb]],inversion UNC5C NA GRIA2 NA TumorSuppressorGene NA NA NA NA -UNC5C--NPNT BS_JAEM78XS 8.03180416082163 4.5993381972818 NA NA differentially expressed differentially expressed NA NA 4:95182897 4:105938301 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr4:10.35Mb]],inversion UNC5C NA NPNT NA TumorSuppressorGene NA NA NA NA -UNC5D--UNC5D BS_2XD3MNKD 0.492355558787654 0.492355558787654 NA NA no change no change NA NA 8:35595657 8:35549292 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.56Mb]],duplication/non-canonical_splicing UNC5D NA UNC5D NA TumorSuppressorGene TumorSuppressorGene NA NA NA -UNC79--UNC79 BS_3G3KWY18 -0.0984123771363708 -0.0984123771363708 NA NA no change no change NA NA 14:93524042 14:93467671 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.37Mb]],duplication/non-canonical_splicing UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA -UNC79--UNC79 BS_DVCQ8XDZ 0.264858612718268 0.264858612718268 NA NA no change no change NA NA 14:93497286 14:93466698 ARRIBA frameshift 7 1 medium [SELFIE,INTRACHROMOSOMAL[chr14:0.37Mb]],duplication UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA -UNC79--UNC79 BS_FJZPQZ2C 0.134160950055608 0.134160950055608 NA NA no change no change NA NA 14:93487755 14:93466698 ARRIBA frameshift 6 0 medium [SELFIE,INTRACHROMOSOMAL[chr14:0.37Mb]],duplication UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA -UNC79--UNC79 BS_HC44ZA0V 0.369413858944292 0.369413858944292 NA NA no change no change NA NA 14:93487755 14:93466698 ARRIBA frameshift 2 1 medium [SELFIE,INTRACHROMOSOMAL[chr14:0.37Mb]],duplication UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA -UNC79--UNC79 BS_YBJBSRHV 0.48177251220274 0.48177251220274 NA NA no change no change NA NA 14:93487755 14:93466698 ARRIBA frameshift 6 0 medium [SELFIE,INTRACHROMOSOMAL[chr14:0.37Mb]],duplication UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA -UNC80--UNC80 BS_0T17SY47 0.600530562871363 0.600530562871363 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_0Y66ZBWE 1.90009094545768 1.90009094545768 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_2XD3MNKD -0.169944289414646 -0.169944289414646 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_398KYV92 0.839645869198037 0.839645869198037 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_399RPKC9 1.07479329359605 1.07479329359605 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_6T4JGBGY 1.30283793919942 1.30283793919942 NA NA no change no change NA NA 2:209904965 2:209877954 ARRIBA in-frame 20 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_86Q14TZG -0.303576044259411 -0.303576044259411 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_9DFBHHB5 -0.019536328997501 -0.019536328997501 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_EHVYJAVA 1.04212602638397 1.04212602638397 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_EN2VK7NY -0.329769849905203 -0.329769849905203 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_FEPRNEXX 1.47098527554652 1.47098527554652 NA NA no change no change NA NA 2:209881094 2:209877954 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_JKXA3FQC 0.591606133249656 0.591606133249656 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_K5802F84 0.81943097233507 0.81943097233507 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_KPT2WPHW 0.824977880451876 0.824977880451876 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_KVNGNETA 1.1965812456279 1.1965812456279 NA NA no change no change NA NA 2:209904965 2:209877954 ARRIBA in-frame 32 8 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_M8WP5T16 0.259798641849179 0.259798641849179 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_N1E0H8YQ 0.161484680131893 0.161484680131893 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_N6NE6B3W 1.35798707662046 1.35798707662046 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 26 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_T1W4JA94 0.158279147128997 0.158279147128997 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_TD1ZEQ7R 0.79698413197277 0.79698413197277 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_VPMKHW9X 0.96746777906234 0.96746777906234 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_W4HGV6E7 -0.453918002082545 -0.453918002082545 NA NA no change no change NA NA 2:209939652 2:209933822 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_Y0PCBNJV 0.635580957309125 0.635580957309125 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_Y7F9E2E9 0.619278085996008 0.619278085996008 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_ZA9XT151 -0.731888355531788 -0.731888355531788 NA NA no change no change NA NA 2:209881094 2:209877954 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_ZR96A4FH 1.12110840964792 1.12110840964792 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNC80--UNC80 BS_ZRM0W01M 1.06802893462557 1.06802893462557 NA NA no change no change NA NA 2:209896413 2:209877954 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA -UNCX--C7orf50 BS_EFE4YEK3 4.5030903873169 -0.572284957310618 NA NA differentially expressed no change NA NA 7:1233695 7:1010143 ARRIBA in-frame 2 1 low [INTRACHROMOSOMAL[chr7:0.09Mb],LOCAL_INVERSION:+:-:[94647]],inversion UNCX NA C7orf50 NA TranscriptionFactor NA NA NA NA -UPF2--POM121L3P(59198)/AL110503.1(92938) BS_92MT680S -0.896560474307896 -0.0980590570701834 NA NA no change no change NA NA 10:11997672 20:24049652 ARRIBA frameshift 3 0 high [],translocation UPF2 NA POM121L3P AL110503.1 NA NA NA NA NA -UPK3BL1--DOCK4 BS_6JHXXVR7 NA 0.558604988893902 NA NA NA no change NA NA 7:102639123 7:112004131 ARRIBA in-frame 6 0 medium [INTRACHROMOSOMAL[chr7:9.08Mb]],duplication UPK3BL1 NA DOCK4 NA NA NA NA NA NA -UQCR11--ARHGAP35 BS_AZN38B7V -1.31224808572046 0.182509463647499 NA NA no change no change NA NA 19:1597438 19:46951688 ARRIBA other 21 0 medium [INTRACHROMOSOMAL[chr19:45.31Mb]],inversion UQCR11 NA ARHGAP35 NA NA TranscriptionFactor NA NA NA -URI1(2048)/AC008507.2(10085)--URI1 BS_N6NE6B3W 2.70132041651924 2.70132041651924 NA NA differentially expressed differentially expressed NA NA 19:30018656 19:29985223 ARRIBA other 2 0 low [],duplication URI1 AC008507.2 URI1 NA NA NA NA NA NA -URI1(3611)/AC008507.2(8522)--URI1 BS_KVNGNETA 3.28882805894432 3.28882805894432 NA NA differentially expressed differentially expressed NA NA 19:30020219 19:29985223 ARRIBA other 1 0 low [],duplication URI1 AC008507.2 URI1 NA NA NA NA NA NA -USF3--MFSD14B(319)/AL358232.1(34914) BS_BPWEFR89 NA NA NA NA NA NA NA NA 3:113677282 9:94461361 ARRIBA other 4 0 medium [],translocation USF3 NA MFSD14B AL358232.1 TranscriptionFactor NA NA NA NA -USH2A--USH2A BS_3NWQXPQV 59.9370274258898 59.9370274258898 NA NA differentially expressed differentially expressed NA NA 1:216321883 1:216327654 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_4D9DD103 66.2745427777702 66.2745427777702 NA NA differentially expressed differentially expressed NA NA 1:216175252 1:216207431 ARRIBA in-frame 5 4 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_61E80SD6 108.896130272374 108.896130272374 NA NA differentially expressed differentially expressed NA NA 1:216175252 1:216207431 ARRIBA in-frame 16 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_6T4JGBGY 129.657341658973 129.657341658973 NA NA differentially expressed differentially expressed NA NA 1:216321883 1:216327654 ARRIBA frameshift 112 7 high [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_7FWZ518S 41.6202540509991 41.6202540509991 NA NA differentially expressed differentially expressed NA NA 1:216175252 1:216207431 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_8S86CM61 66.0242646934978 66.0242646934978 NA NA differentially expressed differentially expressed NA NA 1:216321883 1:216327654 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_9M5XJ10G 96.8465296947631 96.8465296947631 NA NA differentially expressed differentially expressed NA NA 1:216321883 1:216327654 ARRIBA frameshift 32 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_9NJHQE9F 110.266644121624 110.266644121624 NA NA differentially expressed differentially expressed NA NA 1:216046431 1:216207431 ARRIBA in-frame 18 5 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_BSV07M7Z 35.0742279722139 35.0742279722139 NA NA differentially expressed differentially expressed NA NA 1:216175252 1:216207431 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_CHDGRYHJ 128.610764598535 128.610764598535 NA NA differentially expressed differentially expressed NA NA 1:216175252 1:216207431 ARRIBA in-frame 53 12 high [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_EFE4YEK3 42.9302249823454 42.9302249823454 NA NA differentially expressed differentially expressed NA NA 1:216321883 1:216327654 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_HHPA8NJ2 77.1591887570174 77.1591887570174 NA NA differentially expressed differentially expressed NA NA 1:216321883 1:216327654 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_KVNGNETA 157.132778327033 157.132778327033 NA NA differentially expressed differentially expressed NA NA 1:216321883 1:216327654 ARRIBA frameshift 159 10 high [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_M86ECPHK 112.162531111383 112.162531111383 NA NA differentially expressed differentially expressed NA NA 1:216175252 1:216207431 ARRIBA in-frame 37 5 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_NKRYMHEP 34.8793185841673 34.8793185841673 NA NA differentially expressed differentially expressed NA NA 1:216321883 1:216327654 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_NZ71XCG3 22.5661491137862 22.5661491137862 NA NA differentially expressed differentially expressed NA NA 1:216321883 1:216327654 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_V9HVBBDW 78.3649665917848 78.3649665917848 NA NA differentially expressed differentially expressed NA NA 1:216321883 1:216327654 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_VA5T4KAA 80.0102153270822 80.0102153270822 NA NA differentially expressed differentially expressed NA NA 1:216321883 1:216327654 ARRIBA frameshift 19 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_WMEHNDSK 75.4043824774258 75.4043824774258 NA NA differentially expressed differentially expressed NA NA 1:216321883 1:216327654 ARRIBA frameshift 9 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_Y8D1F5WW 68.4407483571633 68.4407483571633 NA NA differentially expressed differentially expressed NA NA 1:216321883 1:216327654 ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A BS_Z45HD492 59.7618836073718 59.7618836073718 NA NA differentially expressed differentially expressed NA NA 1:216321883 1:216327654 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA -USH2A--USH2A(50501)/ESRRG(29349) BS_52426AMF 1.01762729972789 1.01762729972789 NA 3.15389592112604 no change no change NA differentially expressed 1:216321883 1:216473897 ARRIBA frameshift 2 0 medium [],duplication USH2A NA USH2A ESRRG NA NA NA Oncogene, TranscriptionFactor NA -USH2A--USH2A(72784)/ESRRG(7066) BS_ERWT0ZWE 25.0768537724709 25.0768537724709 NA 8.47570136614215 differentially expressed differentially expressed NA differentially expressed 1:216231953 1:216496180 ARRIBA frameshift 1 1 high [],duplication USH2A NA USH2A ESRRG NA NA NA Oncogene, TranscriptionFactor NA -USH2A--USH2A(97)/ESRRG(79753) BS_W6AC5J3C 1.30681957638819 1.30681957638819 NA 2.61498803166866 no change no change NA differentially expressed 1:216321883 1:216423493 ARRIBA frameshift 2 0 medium [],duplication USH2A NA USH2A ESRRG NA NA NA Oncogene, TranscriptionFactor NA -USP14--AC006305.1(22934)/TXNL1(383012) BS_51RA1PGE 1.09414380750883 NA NA -1.13239958964018 no change NA NA no change 18:199316 18:56214196 ARRIBA frameshift 10 0 high [],deletion USP14 NA AC006305.1 TXNL1 NA NA NA NA NA -USP15--TMPO-AS1 BS_W60RQAKK 2.10229255615248 12.6033076467852 NA NA differentially expressed differentially expressed NA NA 12:62355475 12:98515897 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr12:36.10Mb]],inversion USP15 NA TMPO-AS1 NA Oncogene NA NA NA NA -USP24--USP24 BS_7G42J2SK 1.97422458661944 1.97422458661944 NA NA no change no change NA NA 1:55145998 1:55148570 ARRIBA frameshift 13 5 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing USP24 NA USP24 NA Oncogene Oncogene NA NA NA -USP24--USP24 BS_CXVJK2FY 0.989143659698752 0.989143659698752 NA NA no change no change NA NA 1:55145998 1:55148570 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing USP24 NA USP24 NA Oncogene Oncogene NA NA NA -USP24--USP24 BS_CZ3NA7KV 1.31473291082289 1.31473291082289 NA NA no change no change NA NA 1:55145998 1:55148570 ARRIBA frameshift 9 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing USP24 NA USP24 NA Oncogene Oncogene NA NA NA -USP24--USP24 BS_EK5PCKY0 0.299438718458723 0.299438718458723 NA NA no change no change NA NA 1:55145998 1:55148570 ARRIBA frameshift 6 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing USP24 NA USP24 NA Oncogene Oncogene NA NA NA -USP24--USP24 BS_NGHK9RZP 1.19277232022055 1.19277232022055 NA NA no change no change NA NA 1:55145998 1:55148570 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing USP24 NA USP24 NA Oncogene Oncogene NA NA NA -USP24--USP24 BS_W80TJC27 0.908824378630738 0.908824378630738 NA NA no change no change NA NA 1:55145998 1:55148570 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing USP24 NA USP24 NA Oncogene Oncogene NA NA NA -USP31--SCNN1G BS_8ZS9F31R 2.30899294646263 2.37081632226498 NA NA differentially expressed differentially expressed NA NA 16:23148638 16:23186567 ARRIBA frameshift 31 5 high [INTRACHROMOSOMAL[chr16:0.03Mb],LOCAL_INVERSION:-:+:[33445]],duplication/5'-5' USP31 NA SCNN1G NA NA NA NA NA NA -USP34--C2orf78 BS_RRAEQZ97 -0.324418431472547 150.13162343269 NA NA no change differentially expressed NA NA 2:61470650 2:73813477 ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr2:12.31Mb]],inversion USP34 NA C2orf78 NA NA NA NA NA NA -USP34--EIPR1 BS_QYPHA40N 0.335687290406321 NA NA NA no change NA NA NA 2:61470650 2:3214248 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:57.81Mb]],deletion USP34 NA EIPR1 NA NA NA NA NA NA -USP34--USP34 BS_7G42J2SK 0.401141971074591 0.401141971074591 NA NA no change no change NA NA 2:61314585 2:61333971 ARRIBA in-frame 12 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.28Mb]],duplication/non-canonical_splicing USP34 NA USP34 NA NA NA NA NA NA -USP37--USP37 BS_FEPRNEXX 3.14165145389715 3.14165145389715 NA NA differentially expressed differentially expressed NA NA 2:218509979 2:218546298 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.12Mb]],duplication/non-canonical_splicing USP37 NA USP37 NA NA NA NA NA NA -USP40--NLGN2 BS_EJ9JKM1C -1.03325396157599 -1.86024093545879 NA NA no change no change NA NA 2:233493425 17:7415938 ARRIBA frameshift 1 1 high [INTERCHROMOSOMAL[chr2--chr17]],translocation USP40 NA NLGN2 NA NA NA NA NA NA -USP46--AC098868.1 BS_A7Q8G0Y1 4.59865825331108 NA NA NA differentially expressed NA NA NA 4:52610541 4:54446426 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr4:1.78Mb]],duplication USP46 NA AC098868.1 NA NA NA NA NA NA -USP46--AC098868.1(29909)/LINC02260(126579) BS_A7Q8G0Y1 4.59865825331108 NA NA NA differentially expressed NA NA NA 4:52610541 4:54476632 ARRIBA frameshift 5 0 medium [],duplication USP46 NA AC098868.1 LINC02260 NA NA NA NA NA -USP47--AC087379.1 BS_TRKH2SPE -0.765100128581266 NA NA NA no change NA NA NA 11:11897693 11:15702183 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr11:3.74Mb]],inversion USP47 NA AC087379.1 NA NA NA NA NA NA -USP47--USP47 BS_W80TJC27 0.76096422647692 0.76096422647692 NA NA no change no change NA NA 11:11930751 11:11922724 ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr11:0.12Mb]],duplication/non-canonical_splicing USP47 NA USP47 NA NA NA NA NA NA -USP51--AL590410.1(14922)/Y_RNA(47097) BS_SD8YBRBR -2.96149079295367 NA NA 8.07803084856388 differentially expressed NA NA differentially expressed X:55489169 X:55535636 ARRIBA other 4 0 high [],inversion USP51 NA AL590410.1 Y_RNA NA NA NA NA NA -USP6NL--USP6NL BS_1EBQ3T20 3.32401442305364 3.32401442305364 NA NA differentially expressed differentially expressed NA NA 10:11481770 10:11597717 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.16Mb]],duplication/non-canonical_splicing USP6NL NA USP6NL NA NA NA NA NA NA -USP9X--PHKA2 BS_RCCN63K6 4.17905582833496 0.0216361937391102 NA NA differentially expressed no change NA NA X:41131536 X:18936150 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chrX:22.10Mb]],inversion USP9X NA PHKA2 NA NA NA NA NA NA -UST--AL033504.1 BS_4NF35AF6 0.545072096277289 NA NA NA no change NA NA NA 6:148747677 6:147876578 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr6:0.79Mb]],inversion/3'-3' UST NA AL033504.1 NA NA NA NA NA NA -UTP20--AC079953.1(41189)/UTP20(10044) BS_ARFQ1WG3 2.81102122766936 NA NA 2.81102122766936 differentially expressed NA NA differentially expressed 12:101334504 12:101270065 ARRIBA frameshift 2 1 high [],duplication UTP20 NA AC079953.1 UTP20 NA NA NA NA NA -UTRN--AL078604.2(6035)/SOD2(73853) BS_1D6PZNKN 2.72531247521673 NA NA 2.09353253002635 differentially expressed NA NA differentially expressed 6:144700243 6:159595204 ARRIBA frameshift 4 2 high [],inversion UTRN NA AL078604.2 SOD2 NA NA NA TumorSuppressorGene NA -UTRN--AL451061.1(4575)/PLEKHG1(85008) BS_1D6PZNKN 2.72531247521673 NA NA 0.553251567367369 differentially expressed NA NA no change 6:144700243 6:150514875 ARRIBA frameshift 66 1 high [],inversion UTRN NA AL451061.1 PLEKHG1 NA NA NA NA NA -UTRN--IYD(88682)/AL451061.1(10160) BS_1D6PZNKN 2.72531247521673 -0.347300477173699 NA NA differentially expressed no change NA NA 6:144700243 6:150494651 ARRIBA frameshift 4 0 high [],inversion UTRN NA IYD AL451061.1 NA NA NA NA NA -UTRN--UTRN BS_JVA2NQFF 2.63795108541682 2.63795108541682 NA NA differentially expressed differentially expressed NA NA 6:144782123 6:144700087 ARRIBA in-frame 62 6 high [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.57Mb]],duplication/non-canonical_splicing UTRN NA UTRN NA NA NA NA NA NA -UVRAG--AP003049.2 BS_23M72ABG -0.619880014976044 NA NA NA no change NA NA NA 11:75912039 11:109365068 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr11:33.21Mb]],inversion UVRAG NA AP003049.2 NA TumorSuppressorGene NA NA NA NA -UVRAG--AP003049.2 BS_D9GEXXHX -1.00788196389433 NA NA NA no change NA NA NA 11:75912039 11:109382270 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr11:33.21Mb]],inversion UVRAG NA AP003049.2 NA TumorSuppressorGene NA NA NA NA -UVRAG--AP003049.2 BS_D9GEXXHX -1.00788196389433 NA NA NA no change NA NA NA 11:75912039 11:109365068 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:33.21Mb]],inversion UVRAG NA AP003049.2 NA TumorSuppressorGene NA NA NA NA -UVRAG--AP003049.2 BS_KR4MP5ET -0.376373330706957 NA NA NA no change NA NA NA 11:75912039 11:109365068 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr11:33.21Mb]],inversion UVRAG NA AP003049.2 NA TumorSuppressorGene NA NA NA NA -UVRAG--AP003049.2 BS_KR4MP5ET -0.376373330706957 NA NA NA no change NA NA NA 11:75912039 11:109416171 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr11:33.21Mb]],inversion UVRAG NA AP003049.2 NA TumorSuppressorGene NA NA NA NA -UVRAG--UVRAG BS_WSQMAA33 2.2974060263153 2.2974060263153 NA NA differentially expressed differentially expressed NA NA 11:76016980 11:75879879 ARRIBA frameshift 20 2 low [SELFIE,INTRACHROMOSOMAL[chr11:0.33Mb]],duplication/non-canonical_splicing UVRAG NA UVRAG NA TumorSuppressorGene TumorSuppressorGene NA NA NA -VANGL2--SHISA6 BS_3J85TTZM 0.102741630344347 -1.08410745642795 NA NA no change no change NA NA 1:160400869 17:11555740 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr1--chr17]],translocation VANGL2 NA SHISA6 NA NA NA NA NA NA -VANGL2--SHISA6 BS_3J85TTZM 0.102741630344347 -1.08410745642795 NA NA no change no change NA NA 1:160400869 17:11551896 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr1--chr17]],translocation VANGL2 NA SHISA6 NA NA NA NA NA NA -VAV3--5S_rRNA(433235)/DEFB115(8155) BS_84XCR9GG 5.05085162538562 -0.305368524588531 NA NA differentially expressed no change NA NA 1:107748968 20:31249509 ARRIBA frameshift 3 0 high [],translocation VAV3 NA 5S_rRNA DEFB115 Oncogene NA NA NA NA -VAV3--DEFB115 BS_84XCR9GG 5.05085162538562 NA NA NA differentially expressed NA NA NA 1:107748968 20:31249509 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr1--chr20]],translocation VAV3 NA DEFB115 NA Oncogene NA NA NA NA -VAX2--LINC01143 BS_1D6PZNKN 0.693033027941302 14.7339425454941 NA NA no change differentially expressed NA NA 2:70900868 2:70889476 ARRIBA frameshift 5 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[10631]],duplication VAX2 NA LINC01143 NA TranscriptionFactor NA NA NA NA -Vax2os1_3--UTRN BS_1D6PZNKN 4.76851206663343 2.72531247521673 NA NA differentially expressed differentially expressed NA NA 2:70900150 6:144421878 ARRIBA other 43 0 high [INTERCHROMOSOMAL[chr2--chr6]],translocation/3'-3' Vax2os1_3 NA UTRN NA NA NA NA NA NA -VCAN--FBXL17 BS_WAXJY4XQ 3.93605530495433 1.7317230541867 NA NA differentially expressed no change NA NA 5:83483588 5:108431492 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr5:24.28Mb]],inversion VCAN NA FBXL17 NA Oncogene NA NA NA NA -VCL--MIR34AHG BS_Y3G1X98S 4.96070894703337 NA NA NA differentially expressed NA NA NA 10:74097332 1:9174880 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr10--chr1]],translocation/5'-5' VCL NA MIR34AHG NA Oncogene NA NA NA NA -VEZT--ANKS1B BS_X23724NJ 1.66788966807224 -1.07099389526786 NA NA no change no change NA NA 12:95287857 12:99154395 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr12:3.42Mb]],inversion VEZT NA ANKS1B NA TumorSuppressorGene NA NA NA NA -VGLL3--CHD9 BS_VJAC9H58 11.3279670851281 4.67696665531553 NA NA differentially expressed differentially expressed NA NA 3:86968590 16:53141179 ARRIBA frameshift 9 1 medium [INTERCHROMOSOMAL[chr3--chr16]],translocation VGLL3 NA CHD9 NA NA Oncogene NA NA NA -VGLL3--CHD9 BS_VJAC9H58 11.3279670851281 4.67696665531553 NA NA differentially expressed differentially expressed NA NA 3:86968590 16:53155926 ARRIBA frameshift 6 1 medium [INTERCHROMOSOMAL[chr3--chr16]],translocation VGLL3 NA CHD9 NA NA Oncogene NA NA NA -VGLL3--CHD9 BS_VJAC9H58 11.3279670851281 4.67696665531553 NA NA differentially expressed differentially expressed NA NA 3:86978526 16:53155926 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr3--chr16]],translocation VGLL3 NA CHD9 NA NA Oncogene NA NA NA -VGLL3--CHD9 BS_VJAC9H58 11.3279670851281 4.67696665531553 NA NA differentially expressed differentially expressed NA NA 3:86947010 16:53155926 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr3--chr16]],translocation VGLL3 NA CHD9 NA NA Oncogene NA NA NA -VGLL3--CHD9 BS_VJAC9H58 11.3279670851281 4.67696665531553 NA NA differentially expressed differentially expressed NA NA 3:86990618 16:53209482 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr3--chr16]],translocation VGLL3 NA CHD9 NA NA Oncogene NA NA NA -VGLL4--AC099669.2(860)/ZKSCAN7(24942) BS_07ANYSYQ 2.11286861279109 NA NA 2.79994172898606 differentially expressed NA NA differentially expressed 3:11601833 3:44530251 ARRIBA frameshift 4 0 high [],inversion VGLL4 NA AC099669.2 ZKSCAN7 NA NA NA TranscriptionFactor NA -VIPR2--VIPR2(21967)/PIP5K1P2(64511) BS_HD4EJYE3 3.50612509430765 3.50612509430765 NA 12.6093656490224 differentially expressed differentially expressed NA differentially expressed 7:159142446 7:159166924 ARRIBA frameshift 3 0 medium [],inversion VIPR2 NA VIPR2 PIP5K1P2 NA NA NA NA NA -VIPR2--VIPR2(31014)/PIP5K1P2(55464) BS_FCAKKZ20 0.668597444984296 0.668597444984296 NA -0.101392091099978 no change no change NA no change 7:159142446 7:159175971 ARRIBA frameshift 3 0 high [],inversion VIPR2 NA VIPR2 PIP5K1P2 NA NA NA NA NA -VKORC1L1--NUP35P2(107646)/RNA5SP234(1610) BS_RB2S0KDF -1.23586807486 NA NA NA no change NA NA NA 7:65873565 7:79652499 ARRIBA frameshift 2 0 medium [],deletion VKORC1L1 NA NUP35P2 RNA5SP234 NA NA NA NA NA -VKORC1L1--RNA5SP234(1489)/RNU6-849P(256388) BS_RB2S0KDF -1.23586807486 NA NA NA no change NA NA NA 7:65873565 7:79655716 ARRIBA frameshift 2 0 medium [],deletion VKORC1L1 NA RNA5SP234 RNU6-849P NA NA NA NA NA -VKORC1L1--ZNF92(41307)/AC114501.3(20629) BS_4NF35AF6 2.19695107353989 3.05348183998408 NA NA differentially expressed differentially expressed NA NA 7:65873565 7:65442442 ARRIBA frameshift 2 0 high [],inversion VKORC1L1 NA ZNF92 AC114501.3 NA TranscriptionFactor NA NA NA -VN1R21P(7779)/CHCHD4(14427)--TPRXL BS_61E80SD6 0.670062216214804 8.56741279994801 -0.64883781106015 NA no change differentially expressed no change NA 3:14097650 3:14063379 ARRIBA other 1 0 low [],duplication VN1R21P CHCHD4 TPRXL NA NA NA NA NA NA -VPS13B--SARAF BS_HZRM07TW -0.418730845759399 -1.26799814112858 NA NA no change no change NA NA 8:99577633 8:30065958 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr8:68.93Mb]],duplication/5'-5' VPS13B NA SARAF NA NA NA NA NA NA -VPS13B--VPS13B BS_1EBQ3T20 3.95419332988417 3.95419332988417 NA NA differentially expressed differentially expressed NA NA 8:99275254 8:99013760 ARRIBA frameshift 60 2 high [SELFIE,INTRACHROMOSOMAL[chr8:0.86Mb]],duplication/non-canonical_splicing VPS13B NA VPS13B NA NA NA NA NA NA -VPS13C--VPS13C BS_7G42J2SK 1.29519747116373 1.29519747116373 NA NA no change no change NA NA 15:61880609 15:61910305 ARRIBA in-frame 31 6 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.21Mb]],duplication/non-canonical_splicing VPS13C NA VPS13C NA NA NA NA NA NA -VPS13C--VPS13C BS_EK5PCKY0 0.427740386299775 0.427740386299775 NA NA no change no change NA NA 15:61880609 15:61910305 ARRIBA in-frame 12 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.21Mb]],duplication/non-canonical_splicing VPS13C NA VPS13C NA NA NA NA NA NA -VPS13C--VPS13C BS_G63HYD6N 0.986852872117096 0.986852872117096 NA NA no change no change NA NA 15:61880609 15:61910305 ARRIBA in-frame 11 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.21Mb]],duplication/non-canonical_splicing VPS13C NA VPS13C NA NA NA NA NA NA -VPS13D--FGGY BS_RCCN63K6 1.30252454425646 1.63957045062936 NA NA no change no change NA NA 1:12460396 1:59477607 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr1:46.78Mb]],inversion/3'-3' VPS13D NA FGGY NA NA NA NA NA NA -VPS33A--CPM BS_X23724NJ 2.13032687589222 0.593980872888814 NA NA differentially expressed no change NA NA 12:122261261 12:68871956 ARRIBA in-frame 9 2 high [INTRACHROMOSOMAL[chr12:53.26Mb]],deletion VPS33A NA CPM NA NA NA NA NA NA -VPS37B(23744)/ABCB9(763)--ABCB9 BS_N6NE6B3W -1.04718154426826 0.515147237478237 0.515147237478237 NA no change no change no change NA 12:122920188 12:122935431 ARRIBA other 1 1 low [],duplication VPS37B ABCB9 ABCB9 NA NA NA NA NA NA -VPS4B--ATP8B1(30010)/RSL24D1P11(5365) BS_4B0BAVTX 1.59691479061749 0.176124455814364 NA 5.96857886507134 no change no change NA differentially expressed 18:63399242 18:57833111 ARRIBA frameshift 5 0 high [],inversion VPS4B NA ATP8B1 RSL24D1P11 NA Oncogene NA NA NA -VPS50--PEX1 BS_QRDT19KS NA 1.31890821457155 NA NA NA no change NA NA 7:93275719 7:92498767 ARRIBA other 5 5 medium [INTRACHROMOSOMAL[chr7:0.70Mb]],duplication/5'-5' VPS50 NA PEX1 NA NA NA NA NA NA -VPS50--VPS50 BS_8RCR7Y4B NA NA NA NA NA NA NA NA 7:93306004 7:93259550 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.13Mb]],duplication/non-canonical_splicing VPS50 NA VPS50 NA NA NA NA NA NA -VPS51--YIF1A BS_W80TJC27 -1.40724707680469 -0.941141105482147 NA NA no change no change NA NA 11:65097127 11:66288292 ARRIBA in-frame 9 4 high [INTRACHROMOSOMAL[chr11:1.17Mb]],inversion VPS51 NA YIF1A NA NA NA NA NA NA -VPS51--YIF1A BS_W80TJC27 -1.40724707680469 -0.941141105482147 NA NA no change no change NA NA 11:65096478 11:66287916 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.17Mb]],inversion VPS51 NA YIF1A NA NA NA NA NA NA -VPS53--AL022318.4 BS_KZPR01BD 1.63922324645767 NA NA NA no change NA NA NA 17:586270 22:39029363 ARRIBA in-frame 12 0 high [INTERCHROMOSOMAL[chr17--chr22]],translocation VPS53 NA AL022318.4 NA TumorSuppressorGene NA NA NA NA -VPS53--APOBEC3D BS_KZPR01BD 1.63922324645767 2.341844378102 NA NA no change differentially expressed NA NA 17:586270 22:39029363 ARRIBA in-frame 12 0 high [INTERCHROMOSOMAL[chr17--chr22]],translocation VPS53 NA APOBEC3D NA TumorSuppressorGene NA NA NA NA -VPS53--MIS12 BS_QWTE1CWR 0.944312107336555 -1.26916935715939 NA NA no change no change NA NA 17:560426 17:5487066 ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr17:4.76Mb]],duplication/5'-5' VPS53 NA MIS12 NA TumorSuppressorGene NA NA NA NA -VPS53--MIS12 BS_WKESC3XN 1.36897755300091 0.0622539068482417 NA NA no change no change NA NA 17:560426 17:5487066 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr17:4.76Mb]],duplication/5'-5' VPS53 NA MIS12 NA TumorSuppressorGene NA NA NA NA -VPS53--TACC2 BS_KE56MMY0 1.13064693876642 0.0799665356029479 NA NA no change no change NA NA 17:601795 10:122021937 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr17--chr10]],translocation VPS53 NA TACC2 NA TumorSuppressorGene NA NA NA NA -VPS8--AC117457.1 BS_V3Z3DB4N 0.515992272670271 NA NA NA no change NA NA NA 3:184966713 3:178483117 ARRIBA frameshift 3 2 high [],duplication VPS8 NA AC117457.1 NA NA NA NA NA NA -VPS8--ATP11B BS_P0QF87WC 1.35483113462696 2.87072622400261 NA NA no change differentially expressed NA NA 3:184875152 3:182872356 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr3:1.89Mb]],duplication VPS8 NA ATP11B NA NA NA NA NA NA -VPS8--ATP11B BS_P0QF87WC 1.35483113462696 2.87072622400261 NA NA no change differentially expressed NA NA 3:184870805 3:182872356 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr3:1.89Mb]],duplication VPS8 NA ATP11B NA NA NA NA NA NA -VPS8--KCNMB2 BS_V3Z3DB4N 0.515992272670271 -0.168111203197379 NA NA no change no change NA NA 3:184966713 3:178483117 ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr3:5.97Mb]],duplication VPS8 NA KCNMB2 NA NA NA NA NA NA -VPS8--VPS8 BS_7GJT4A6A 2.82103428419259 2.82103428419259 NA NA differentially expressed differentially expressed NA NA 3:184826231 3:184824545 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.24Mb]],duplication/non-canonical_splicing VPS8 NA VPS8 NA NA NA NA NA NA -VPS8--VPS8 BS_G63HYD6N 0.12705193038381 0.12705193038381 NA NA no change no change NA NA 3:184863067 3:184824545 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.24Mb]],duplication/non-canonical_splicing VPS8 NA VPS8 NA NA NA NA NA NA -VPS8--VPS8 BS_JXNZYGCR 0.183835828341179 0.183835828341179 NA NA no change no change NA NA 3:184863067 3:184853857 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.24Mb]],duplication/non-canonical_splicing VPS8 NA VPS8 NA NA NA NA NA NA -VRK3--AC010624.1 BS_VAAHBH60 1.36782493888587 NA NA NA no change NA NA NA 19:50020585 19:50066384 ARRIBA other 8 0 high [INTRACHROMOSOMAL[chr19:0.02Mb],LOCAL_INVERSION:-:+:[24643]],duplication/5'-5' VRK3 NA AC010624.1 NA Kinase, Kinase NA NA NA NA -VTI1A--CHST15(51145)/OAT(252551) BS_EJ9JKM1C 2.48763677359662 -0.0529855743700483 NA -0.755166551723886 differentially expressed no change NA no change 10:112668998 10:124144752 ARRIBA frameshift 3 0 high [],deletion VTI1A NA CHST15 OAT CosmicCensus, Oncogene NA NA NA NA -VTI1A--LRMDA BS_C3P5BC92 2.95067020054632 NA NA NA differentially expressed NA NA NA 10:112668998 10:76036008 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr10:35.89Mb]],duplication VTI1A NA LRMDA NA CosmicCensus, Oncogene NA NA NA NA -VWA3A--C20orf27 BS_NGHK9RZP 2.84617061295798 -0.877196413499941 NA NA differentially expressed no change NA NA 16:22142300 20:3767754 ARRIBA other 8 1 medium [INTERCHROMOSOMAL[chr16--chr20]],translocation VWA3A NA C20orf27 NA NA NA NA NA NA -VWA3A--C20orf27 BS_NGHK9RZP 2.84617061295798 -0.877196413499941 NA NA differentially expressed no change NA NA 16:22141692 20:3755607 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr16--chr20]],translocation VWA3A NA C20orf27 NA NA NA NA NA NA -WASF3--DNAH9 BS_QWTE1CWR -1.93857275590648 2.13438466649242 NA NA no change differentially expressed NA NA 13:26671989 17:11902719 ARRIBA in-frame 43 3 high [INTERCHROMOSOMAL[chr13--chr17]],translocation WASF3 NA DNAH9 NA NA Oncogene NA NA NA -WASF3--DNAH9 BS_WKESC3XN -2.14371013331988 1.07003272803922 NA NA differentially expressed no change NA NA 13:26671989 17:11902719 ARRIBA in-frame 27 3 high [INTERCHROMOSOMAL[chr13--chr17]],translocation WASF3 NA DNAH9 NA NA Oncogene NA NA NA -WASH5P--LINC01237 BS_9P9MB8X8 -0.0855900619106389 2.92520682361696 NA NA no change differentially expressed NA NA 19:66346 2:242051920 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr19--chr2]],translocation WASH5P NA LINC01237 NA NA NA NA NA NA -WASH5P--LINC01237 BS_9P9MB8X8 -0.0855900619106389 2.92520682361696 NA NA no change differentially expressed NA NA 19:66346 2:242078460 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr19--chr2]],translocation WASH5P NA LINC01237 NA NA NA NA NA NA -WASH5P--LINC01880 BS_9P9MB8X8 -0.0855900619106389 NA NA NA no change NA NA NA 19:66346 2:242051920 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr19--chr2]],translocation/5'-5' WASH5P NA LINC01880 NA NA NA NA NA NA -WBP1L--ARIH1 BS_P4D8Y3S8 1.88963410320396 0.919080378309828 NA NA no change no change NA NA 10:102810054 15:72518067 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr10--chr15]],translocation WBP1L NA ARIH1 NA NA NA NA NA NA -WBP1L--HIVEP3 BS_P4D8Y3S8 1.88963410320396 1.73120131769286 NA NA no change no change NA NA 10:102744143 1:41524910 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr10--chr1]],translocation WBP1L NA HIVEP3 NA NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -WBP1L--LINC01153(127395)/RN7SKP167(97555) BS_CREQ97QC 1.36485572668683 -0.254517353526367 NA -0.0403957163378956 no change no change NA no change 10:102744143 10:121313361 ARRIBA frameshift 3 0 high [],inversion WBP1L NA LINC01153 RN7SKP167 NA NA NA NA NA -WDFY2--SLAMF6P1 BS_C41DJZ1F 1.01347953533205 -0.126006052643154 NA NA no change no change NA NA 13:51758300 1:162467443 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr13--chr1]],translocation/5'-5' WDFY2 NA SLAMF6P1 NA NA NA NA NA NA -WDR17--GPM6A BS_2AR3AP0N 1.11381279474965 0.990191841392445 NA NA no change no change NA NA 4:176066079 4:175701767 ARRIBA other 3 0 medium [GTEx,INTRACHROMOSOMAL[chr4:0.06Mb],LOCAL_INVERSION:+:-:[63170]],inversion WDR17 NA GPM6A NA NA NA NA NA NA -WDR17--WDR17 BS_3NWQXPQV 0.353917716526979 0.353917716526979 NA NA no change no change NA NA 4:176151967 4:176128738 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing WDR17 NA WDR17 NA NA NA NA NA NA -WDR17--WDR17 BS_66HQ3E4Z 0.385016178572216 0.385016178572216 NA NA no change no change NA NA 4:176177654 4:176149807 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing WDR17 NA WDR17 NA NA NA NA NA NA -WDR17--WDR17 BS_7G42J2SK 2.38897117363465 2.38897117363465 NA NA differentially expressed differentially expressed NA NA 4:176139974 4:176128738 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing WDR17 NA WDR17 NA NA NA NA NA NA -WDR17--WDR17 BS_NGHK9RZP 1.27212773779246 1.27212773779246 NA NA no change no change NA NA 4:176139974 4:176128738 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing WDR17 NA WDR17 NA NA NA NA NA NA -WDR17--WDR17 BS_S5P8VTN5 1.48938361704656 1.48938361704656 NA NA no change no change NA NA 4:176177654 4:176149807 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing WDR17 NA WDR17 NA NA NA NA NA NA -WDR19--KLF3(3117)/RNA5SP158(54632) BS_K17VQECG -0.853162144139242 2.5039189782548 NA NA no change differentially expressed NA NA 4:39244552 4:38704159 ARRIBA frameshift 5 0 medium [],inversion WDR19 NA KLF3 RNA5SP158 NA Oncogene, TranscriptionFactor NA NA NA -WDR27--WDR27 BS_E4F1D721 0.496516636740427 0.496516636740427 NA NA no change no change NA NA 6:169663563 6:169689308 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.24Mb]],duplication/non-canonical_splicing WDR27 NA WDR27 NA NA NA NA NA NA -WDR3--TTLL7 BS_D9GEXXHX 2.8992306986329 -2.67057951856512 NA NA differentially expressed differentially expressed NA NA 1:117936887 1:83883136 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:33.93Mb]],inversion WDR3 NA TTLL7 NA NA NA NA NA NA -WDR3--TTLL7 BS_D9GEXXHX 2.8992306986329 -2.67057951856512 NA NA differentially expressed differentially expressed NA NA 1:117934682 1:83870082 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:33.93Mb]],inversion WDR3 NA TTLL7 NA NA NA NA NA NA -WDR3--TTLL7 BS_D9GEXXHX 2.8992306986329 -2.67057951856512 NA NA differentially expressed differentially expressed NA NA 1:117934682 1:83883136 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:33.93Mb]],inversion WDR3 NA TTLL7 NA NA NA NA NA NA -WDR3--TTLL7 BS_KR4MP5ET 3.60081139192949 -2.46170969400657 NA NA differentially expressed differentially expressed NA NA 1:117936887 1:83883136 ARRIBA in-frame 2 0 high [INTRACHROMOSOMAL[chr1:33.93Mb]],inversion WDR3 NA TTLL7 NA NA NA NA NA NA -WDR3--TTLL7 BS_KR4MP5ET 3.60081139192949 -2.46170969400657 NA NA differentially expressed differentially expressed NA NA 1:117934682 1:83870082 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:33.93Mb]],inversion WDR3 NA TTLL7 NA NA NA NA NA NA -WDR49--WDR49 BS_063ERW0R 2.87956333594035 2.87956333594035 NA NA differentially expressed differentially expressed NA NA 3:167554683 3:167633532 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.18Mb]],duplication/non-canonical_splicing WDR49 NA WDR49 NA NA NA NA NA NA -WDR49--WDR49 BS_2EMW8ZG3 4.23709750965673 4.23709750965673 NA NA differentially expressed differentially expressed NA NA 3:167575918 3:167633532 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.18Mb]],duplication/non-canonical_splicing WDR49 NA WDR49 NA NA NA NA NA NA -WDR49--WDR49 BS_DBDXCXT5 2.39530735028616 2.39530735028616 NA NA differentially expressed differentially expressed NA NA 3:167554650 3:167560228 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.18Mb]],duplication/non-canonical_splicing WDR49 NA WDR49 NA NA NA NA NA NA -WDR49--WDR49 BS_Z2NWPQKF 5.04993614098475 5.04993614098475 NA NA differentially expressed differentially expressed NA NA 3:167575918 3:167633532 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.18Mb]],duplication/non-canonical_splicing WDR49 NA WDR49 NA NA NA NA NA NA -WDR49--WDR49(10465)/PDCD10(18850) BS_1JDG6JV5 2.09395478956153 2.09395478956153 NA 0.632858080585345 differentially expressed differentially expressed NA no change 3:167575918 3:167664448 ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(10465)/PDCD10(18850) BS_2A5R9MEJ 3.13937117822371 3.13937117822371 NA 0.37928501029829 differentially expressed differentially expressed NA no change 3:167575918 3:167664448 ARRIBA frameshift 2 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(10465)/PDCD10(18850) BS_6T4JGBGY 0.840136536606735 0.840136536606735 NA -0.308944420624029 no change no change NA no change 3:167575918 3:167664448 ARRIBA frameshift 1 2 high [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(10465)/PDCD10(18850) BS_8PNA0V6R 2.76646158557095 2.76646158557095 NA -0.892438024425967 differentially expressed differentially expressed NA no change 3:167602127 3:167664448 ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(10465)/PDCD10(18850) BS_CQSAJ7BF 2.13245527723599 2.13245527723599 NA -0.27598481571696 differentially expressed differentially expressed NA no change 3:167575918 3:167664448 ARRIBA frameshift 1 1 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(10465)/PDCD10(18850) BS_FEPRNEXX 3.60270293838823 3.60270293838823 NA -0.759022848123395 differentially expressed differentially expressed NA no change 3:167500153 3:167664448 ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(10465)/PDCD10(18850) BS_MKM0EEN1 3.19531428078781 3.19531428078781 NA 0.581779708307018 differentially expressed differentially expressed NA no change 3:167575918 3:167664448 ARRIBA frameshift 2 1 medium [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(10465)/PDCD10(18850) BS_N6NE6B3W 2.97527412043131 2.97527412043131 NA -0.808736021964529 differentially expressed differentially expressed NA no change 3:167653261 3:167664448 ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(10465)/PDCD10(18850) BS_PZVHMSYN 5.77464870831887 5.77464870831887 NA 0.266731953489004 differentially expressed differentially expressed NA no change 3:167554683 3:167664448 ARRIBA frameshift 1 1 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(10465)/PDCD10(18850) BS_S1KK7XRH 1.42516463921342 1.42516463921342 NA -0.399179841983759 no change no change NA no change 3:167575918 3:167664448 ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(10465)/PDCD10(18850) BS_TRKH2SPE 4.42075647201387 4.42075647201387 NA 0.19352950531851 differentially expressed differentially expressed NA no change 3:167575918 3:167664448 ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(4343)/PDCD10(24972) BS_09R7GDA7 2.42849318146652 2.42849318146652 NA 1.35619885958633 differentially expressed differentially expressed NA no change 3:167554683 3:167658326 ARRIBA frameshift 1 3 high [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(4343)/PDCD10(24972) BS_5PEFNDCY 5.82168509965489 5.82168509965489 NA 0.00787813219287128 differentially expressed differentially expressed NA no change 3:167529052 3:167658326 ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(4343)/PDCD10(24972) BS_9M5XJ10G 0.65376211954424 0.65376211954424 NA -0.97925040155239 no change no change NA no change 3:167522315 3:167658326 ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(4343)/PDCD10(24972) BS_M4NVX721 2.85551144583513 2.85551144583513 NA -0.220288705316035 differentially expressed differentially expressed NA no change 3:167554683 3:167658326 ARRIBA frameshift 2 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(4343)/PDCD10(24972) BS_R7HZCZ8B 4.71285611372198 4.71285611372198 NA -1.16851783346419 differentially expressed differentially expressed NA no change 3:167554683 3:167658326 ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(4343)/PDCD10(24972) BS_SFKZSJN1 5.96479601702302 5.96479601702302 NA -0.45347279838293 differentially expressed differentially expressed NA no change 3:167554683 3:167658326 ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(4343)/PDCD10(24972) BS_X23724NJ 2.24372182291926 2.24372182291926 NA -0.204364464031879 differentially expressed differentially expressed NA no change 3:167527820 3:167658326 ARRIBA frameshift 1 1 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(4343)/PDCD10(24972) BS_XGSA3GQE 2.40743839183355 2.40743839183355 NA -0.167624619390424 differentially expressed differentially expressed NA no change 3:167522315 3:167658326 ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR49--WDR49(9259)/PDCD10(20056) BS_Z7PKVY9J 1.93595444606761 1.93595444606761 NA -0.799618230787608 no change no change NA no change 3:167575918 3:167663242 ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA -WDR63--WDR63 BS_196BBNEJ 2.33865222070459 2.33865222070459 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_8RHPJ740 3.26036750379332 3.26036750379332 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_AG3D3435 4.23644607832812 4.23644607832812 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_CZ3ER8DY 4.80548981910038 4.80548981910038 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA frameshift 6 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_D3YBV7KB 1.58761293723717 1.58761293723717 NA NA no change no change NA NA 1:85110135 1:85104524 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_EK5PCKY0 4.39472528378211 4.39472528378211 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_H0QWRJE2 5.19494506098178 5.19494506098178 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA frameshift 5 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_H4NXBD2D 5.152170987724 5.152170987724 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_HZ707C55 6.01044353519814 6.01044353519814 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA frameshift 17 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_M1T1K5WV 4.18473585945774 4.18473585945774 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_N5DVEJXT 3.81781766892464 3.81781766892464 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_NGHK9RZP 5.30092770996248 5.30092770996248 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA frameshift 15 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_NRPG5K4K 1.79478201819576 1.79478201819576 NA NA no change no change NA NA 1:85110135 1:85104524 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_P78SMRBS 4.538128900759 4.538128900759 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_PKK3BZRG 6.98565893909716 6.98565893909716 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_Q5WZYWCT 6.41695334315334 6.41695334315334 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_QSTAVWGE 5.62858814568941 5.62858814568941 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_RHD7XPNP 5.62858814568941 5.62858814568941 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA in-frame 12 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_SAA624A4 1.64133905964174 1.64133905964174 NA NA no change no change NA NA 1:85110135 1:85104524 ARRIBA frameshift 20 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_SDCNP7MW 5.97169956683308 5.97169956683308 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_T4P3J13C 3.28140641282202 3.28140641282202 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_TNRHHYNC 3.4458115613805 3.4458115613805 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_V4W81SFC 3.26388855858216 3.26388855858216 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_W4HGV6E7 6.58656054108459 6.58656054108459 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA frameshift 20 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_WRHDP7WF 2.63321593531129 2.63321593531129 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_XQYHPBFS 2.24392048934477 2.24392048934477 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR63--WDR63 BS_YE1MAQYJ 6.00563918659151 6.00563918659151 NA NA differentially expressed differentially expressed NA NA 1:85110135 1:85104524 ARRIBA in-frame 14 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA -WDR70--CTNND2 BS_NJ4WPQVK 3.31688963625366 0.230619531073052 NA NA differentially expressed no change NA NA 5:37727045 5:11412069 ARRIBA in-frame 4 1 high [INTRACHROMOSOMAL[chr5:25.48Mb]],inversion WDR70 NA CTNND2 NA NA CosmicCensus, Oncogene NA NA NA -WDR82--PBRM1 BS_QEYPFYHD 2.54403325623838 6.0991457324796 NA NA differentially expressed differentially expressed NA NA 3:52284528 3:52634815 ARRIBA other 25 0 medium [INTRACHROMOSOMAL[chr3:0.26Mb]],duplication WDR82 NA PBRM1 NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -WDR82--PBRM1 BS_Z7PKVY9J 1.91020087741825 5.67603712546324 NA NA no change differentially expressed NA NA 3:52284528 3:52634815 ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr3:0.26Mb]],duplication WDR82 NA PBRM1 NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -WDR86--AC015983.1(60810)/FEZF1(5681) BS_RB2S0KDF 6.68397988037547 NA NA 0.351166278683329 differentially expressed NA NA no change 7:151395776 7:122295713 ARRIBA frameshift 11 0 high [],inversion WDR86 NA AC015983.1 FEZF1 NA NA NA TranscriptionFactor NA -WFS1--PLAG1 BS_91VYM11A 1.9730468469766 14.5900163528994 NA NA no change differentially expressed NA NA 4:6270014 8:56171189 ARRIBA other 119 4 high [INTERCHROMOSOMAL[chr4--chr8]],translocation WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -WFS1--PLAG1 BS_91VYM11A 1.9730468469766 14.5900163528994 NA NA no change differentially expressed NA NA 4:6270014 8:56179513 ARRIBA other 32 7 high [INTERCHROMOSOMAL[chr4--chr8]],translocation WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -WFS1--PLAG1 BS_H0QWRJE2 2.34231821284739 14.6612433716532 NA NA differentially expressed differentially expressed NA NA 4:6270014 8:56171189 ARRIBA other 153 10 high [INTERCHROMOSOMAL[chr4--chr8]],translocation WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -WFS1--PLAG1 BS_H0QWRJE2 2.34231821284739 14.6612433716532 NA NA differentially expressed differentially expressed NA NA 4:6270014 8:56179513 ARRIBA other 51 13 high [INTERCHROMOSOMAL[chr4--chr8]],translocation WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -WFS1--PLAG1 BS_TJTEF70D 1.20738126614417 16.5677041667454 NA NA no change differentially expressed NA NA 4:6270014 8:56171189 ARRIBA other 115 36 high [INTERCHROMOSOMAL[chr4--chr8]],translocation WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -WFS1--PLAG1 BS_TJTEF70D 1.20738126614417 16.5677041667454 NA NA no change differentially expressed NA NA 4:6270014 8:56179513 ARRIBA other 28 38 high [INTERCHROMOSOMAL[chr4--chr8]],translocation WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -WFS1--PLAG1 BS_TK84K675 1.26661758356245 11.1127676805777 NA NA no change differentially expressed NA NA 4:6270014 8:56171189 ARRIBA other 78 6 high [INTERCHROMOSOMAL[chr4--chr8]],translocation WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -WFS1--PLAG1 BS_TK84K675 1.26661758356245 11.1127676805777 NA NA no change differentially expressed NA NA 4:6270014 8:56179513 ARRIBA other 15 7 high [INTERCHROMOSOMAL[chr4--chr8]],translocation WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -WFS1--TARSL2 BS_H0QWRJE2 2.34231821284739 3.05182618195255 NA NA differentially expressed differentially expressed NA NA 4:6289131 15:101714963 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr4--chr15]],translocation WFS1 NA TARSL2 NA NA NA NA NA NA -WLS--SERBP1 BS_ZN8136D9 3.47243423539869 2.5996492793536 NA NA differentially expressed differentially expressed NA NA 1:68232194 1:67426285 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.67Mb]],deletion WLS NA SERBP1 NA NA NA NA NA NA -WNK1--AC007207.1(18891)/CCND2-AS1(111742) BS_W644VEVE 1.94863063009368 NA NA 2.35256618193704 no change NA NA differentially expressed 12:754324 12:4137023 ARRIBA frameshift 4 0 medium [],inversion WNK1 NA AC007207.1 CCND2-AS1 Kinase, Kinase NA NA Oncogene NA -WNK1--CCDC77 BS_W644VEVE 1.94863063009368 2.84829449265605 NA NA no change differentially expressed NA NA 12:830160 12:409368 ARRIBA frameshift 18 9 high [ChimerSeq,CCLE,INTRACHROMOSOMAL[chr12:0.31Mb]],duplication WNK1 NA CCDC77 NA Kinase, Kinase NA NA NA TCGAFusion -WNK1--CCDC77 BS_W644VEVE 1.94863063009368 2.84829449265605 NA NA no change differentially expressed NA NA 12:830160 12:411747 ARRIBA frameshift 11 6 high [ChimerSeq,CCLE,INTRACHROMOSOMAL[chr12:0.31Mb]],duplication WNK1 NA CCDC77 NA Kinase, Kinase NA NA NA TCGAFusion -WNK1--CCDC77 BS_W644VEVE 1.94863063009368 2.84829449265605 NA NA no change differentially expressed NA NA 12:830160 12:428769 ARRIBA frameshift 1 0 low [ChimerSeq,CCLE,INTRACHROMOSOMAL[chr12:0.31Mb]],duplication WNK1 NA CCDC77 NA Kinase, Kinase NA NA NA TCGAFusion -WNK1--CCDC77 BS_W644VEVE 1.94863063009368 2.84829449265605 NA NA no change differentially expressed NA NA 12:754324 12:433174 ARRIBA in-frame 1 0 low [ChimerSeq,CCLE,INTRACHROMOSOMAL[chr12:0.31Mb]],duplication WNK1 NA CCDC77 NA Kinase, Kinase NA NA NA TCGAFusion -WNK1--EMILIN2 BS_4B0BAVTX 1.015494657704 2.68892972033244 NA NA no change differentially expressed NA NA 12:883568 18:2858056 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr12--chr18]],translocation/5'-5' WNK1 NA EMILIN2 NA Kinase, Kinase NA NA NA NA -WNK1--LARP4B BS_A0DYVX9J 3.41455792388367 2.91661732495298 NA NA differentially expressed differentially expressed NA NA 12:830160 10:906371 ARRIBA frameshift 214 26 high [INTERCHROMOSOMAL[chr12--chr10]],translocation/5'-5' WNK1 NA LARP4B NA Kinase, Kinase CosmicCensus NA NA NA -WNK1--MYCNOS BS_W644VEVE 1.94863063009368 14.3828701915834 NA NA no change differentially expressed NA NA 12:830160 2:15941097 ARRIBA frameshift 19 4 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation WNK1 NA MYCNOS NA Kinase, Kinase NA NA NA NA -WNK1--PRKG1 BS_A0DYVX9J 3.41455792388367 -0.804067503575517 NA NA differentially expressed no change NA NA 12:827262 10:51907507 ARRIBA frameshift 3 1 medium [INTERCHROMOSOMAL[chr12--chr10]],translocation WNK1 NA PRKG1 NA Kinase, Kinase Kinase NA NA NA -WNK1--RN7SL104P(2998)/AC010145.1(43070) BS_W644VEVE 1.94863063009368 NA NA NA no change NA NA NA 12:830160 2:15953979 ARRIBA frameshift 4 0 medium [],translocation WNK1 NA RN7SL104P AC010145.1 Kinase, Kinase NA NA NA NA -WNK3--WNK3 BS_0HW7W7SD 11.3613199272962 11.3613199272962 NA NA differentially expressed differentially expressed NA NA X:54248697 X:54259338 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA -WNK3--WNK3 BS_7XRN3CFX 6.18466974544391 6.18466974544391 NA NA differentially expressed differentially expressed NA NA X:54248697 X:54259338 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA -WNK3--WNK3 BS_8PNA0V6R 9.06723232710711 9.06723232710711 NA NA differentially expressed differentially expressed NA NA X:54248697 X:54259338 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA -WNK3--WNK3 BS_BKR4E30C 4.10830088202697 4.10830088202697 NA NA differentially expressed differentially expressed NA NA X:54248697 X:54259338 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA -WNK3--WNK3 BS_NKRYMHEP 10.7593093375989 10.7593093375989 NA NA differentially expressed differentially expressed NA NA X:54248697 X:54259338 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA -WNK3--WNK3 BS_PEP9NZXN 10.7650702377479 10.7650702377479 NA NA differentially expressed differentially expressed NA NA X:54248697 X:54259338 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA -WNK3--WNK3 BS_TNRHHYNC 2.80925290650017 2.80925290650017 NA NA differentially expressed differentially expressed NA NA X:54248697 X:54259338 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA -WNK3--WNK3 BS_TW8DQH8J 4.78475267363928 4.78475267363928 NA NA differentially expressed differentially expressed NA NA X:54307922 X:54333792 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA -WNK3--WNK3 BS_VP3C8WZT 10.672209437426 10.672209437426 NA NA differentially expressed differentially expressed NA NA X:54248697 X:54259338 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA -WNT5B--AC007207.1 BS_W644VEVE 7.93034064068299 NA NA NA differentially expressed NA NA NA 12:1635100 12:4112403 ARRIBA other 4 3 medium [INTRACHROMOSOMAL[chr12:2.46Mb]],duplication/3'-3' WNT5B NA AC007207.1 NA NA NA NA NA NA -WNT5B--TSPAN9 BS_W644VEVE 7.93034064068299 1.93250949774353 NA NA differentially expressed no change NA NA 12:1584233 12:3272884 ARRIBA other 25 5 medium [INTRACHROMOSOMAL[chr12:1.43Mb]],inversion/3'-3' WNT5B NA TSPAN9 NA NA NA NA NA NA -WRN--AC016074.1(105653)/RNU6-442P(45057) BS_R439VVPK 2.80737464776234 NA NA NA differentially expressed NA NA NA 8:31147476 8:125855894 ARRIBA frameshift 4 0 high [],inversion WRN NA AC016074.1 RNU6-442P CosmicCensus, Oncogene NA NA NA NA -WRN--AC016074.1(105653)/RNU6-442P(45057) BS_R439VVPK 2.80737464776234 NA NA NA differentially expressed NA NA NA 8:31147476 8:125855894 ARRIBA frameshift 2 0 medium [],inversion WRN NA AC016074.1 RNU6-442P CosmicCensus, Oncogene NA NA NA NA -WRN--WRN BS_2SFTWNVE 2.05983198988594 2.05983198988594 NA NA differentially expressed differentially expressed NA NA 8:31143623 8:31080867 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.14Mb]],duplication/non-canonical_splicing WRN NA WRN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -WRN--WRN BS_5PEFNDCY 1.29456909530623 1.29456909530623 NA NA no change no change NA NA 8:31096850 8:31083699 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.14Mb]],duplication/non-canonical_splicing WRN NA WRN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -WRN--WRN BS_7G42J2SK 2.9734944663455 2.9734944663455 NA NA differentially expressed differentially expressed NA NA 8:31116528 8:31076173 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.14Mb]],duplication/non-canonical_splicing WRN NA WRN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -WWC3--FGF6 BS_49FQXT2E 1.62763451402893 38.1532511908995 NA NA no change differentially expressed NA NA X:10079804 12:4445273 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chrX--chr12]],translocation WWC3 NA FGF6 NA NA Oncogene NA NA NA -WWC3--FGF6 BS_49FQXT2E 1.62763451402893 38.1532511908995 NA NA no change differentially expressed NA NA X:10079804 12:4444236 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chrX--chr12]],translocation WWC3 NA FGF6 NA NA Oncogene NA NA NA -WWC3--FGF6(3568)/C12orf4(38546) BS_49FQXT2E 1.62763451402893 38.1532511908995 NA 3.94489753256313 no change differentially expressed NA differentially expressed X:10079804 12:4449182 ARRIBA frameshift 3 0 high [],translocation WWC3 NA FGF6 C12orf4 NA Oncogene NA NA NA -WWC3--PNPLA4 BS_M0QYNVK8 2.51364079168998 -0.538678463252565 NA NA differentially expressed no change NA NA X:10067490 X:7912093 ARRIBA frameshift 13 3 high [INTRACHROMOSOMAL[chrX:2.09Mb]],inversion WWC3 NA PNPLA4 NA NA NA NA NA NA -WWOX--CDYL2 BS_H1ZS5FMZ 0.368299723060233 0.36739824845356 NA NA no change no change NA NA 16:78432752 16:80685129 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr16:1.39Mb]],inversion WWOX NA CDYL2 NA TumorSuppressorGene, Oncogene NA NA NA NA -WWP1--CCDC25 BS_HZRM07TW -0.47655663998608 -3.1493662678719 NA NA no change differentially expressed NA NA 8:86381629 8:27765251 ARRIBA in-frame 2 0 high [INTRACHROMOSOMAL[chr8:58.57Mb]],inversion WWP1 NA CCDC25 NA Oncogene NA NA NA NA -XAB2--ELMO1 BS_K17VQECG 0.600273601345075 -1.92257045420575 NA NA no change no change NA NA 19:7629477 7:37013435 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr19--chr7]],translocation XAB2 NA ELMO1 NA NA Oncogene NA NA NA -XKR9--AC022858.1 BS_7FWZ518S 3.60260349824586 NA NA NA differentially expressed NA NA NA 8:70713576 8:71199140 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:0.37Mb]],deletion XKR9 NA AC022858.1 NA NA NA NA NA NA -XKR9--AC022858.1 BS_Y8D1F5WW 2.82973609553883 NA NA NA differentially expressed NA NA NA 8:70713576 8:71199140 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr8:0.37Mb]],deletion XKR9 NA AC022858.1 NA NA NA NA NA NA -XPO4--XPO4 BS_0T17SY47 1.5619535614563 1.5619535614563 NA NA no change no change NA NA 13:20827067 13:20868701 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.13Mb]],duplication/non-canonical_splicing XPO4 NA XPO4 NA NA NA NA NA NA -XPO6--AHSP BS_49FQXT2E -0.277008704614788 7.94217406191183 NA NA no change differentially expressed NA NA 16:28166508 16:31528458 ARRIBA frameshift 36 2 high [INTRACHROMOSOMAL[chr16:3.32Mb]],inversion XPO6 NA AHSP NA NA NA NA NA NA -XRCC4--MSH3 BS_1EBQ3T20 6.82882535349175 6.30572119148074 NA NA differentially expressed differentially expressed NA NA 5:83258677 5:80656411 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr5:2.20Mb]],duplication XRCC4 NA MSH3 NA NA Oncogene NA NA NA -XRCC4--XRCC4 BS_1EBQ3T20 6.82882535349175 6.82882535349175 NA NA differentially expressed differentially expressed NA NA 5:83258677 5:83104910 ARRIBA frameshift 39 5 low [SELFIE,INTRACHROMOSOMAL[chr5:0.28Mb]],duplication/non-canonical_splicing XRCC4 NA XRCC4 NA NA NA NA NA NA -XRCC4--XRCC4 BS_8ZD6J47V 2.32832324590761 2.32832324590761 NA NA differentially expressed differentially expressed NA NA 5:83258677 5:83104910 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.28Mb]],duplication/non-canonical_splicing XRCC4 NA XRCC4 NA NA NA NA NA NA -XRCC4--XRCC4 BS_RHD7XPNP -0.393557451766454 -0.393557451766454 NA NA no change no change NA NA 5:83258677 5:83104910 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.28Mb]],duplication/non-canonical_splicing XRCC4 NA XRCC4 NA NA NA NA NA NA -XRN1--XRN1 BS_EK5PCKY0 2.78037681382085 2.78037681382085 NA NA differentially expressed differentially expressed NA NA 3:142380082 3:142405076 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.14Mb]],duplication/non-canonical_splicing XRN1 NA XRN1 NA NA NA NA NA NA -XXYLT1--SEC22A BS_479S95Q6 1.36761127146996 1.0597452053616 NA NA no change no change NA NA 3:195156449 3:123247160 ARRIBA frameshift 12 1 high [INTRACHROMOSOMAL[chr3:71.79Mb]],deletion/5'-5' XXYLT1 NA SEC22A NA Oncogene NA NA NA NA -XYLT1--SHC1P1(75064)/YWHAZP7(103423) BS_RCCN63K6 9.99450373484031 476.442843856765 NA -0.0294627825494395 differentially expressed differentially expressed NA no change 16:17200482 X:64509209 ARRIBA frameshift 7 0 high [],translocation XYLT1 NA SHC1P1 YWHAZP7 NA NA NA NA NA -Y_RNA(10649)/FRMPD4(72891)--FRMPD4 BS_09R7GDA7 -0.162236315085263 3.23092410611228 3.23092410611228 NA no change differentially expressed differentially expressed NA X:12065575 X:12498680 ARRIBA other 4 2 high [],deletion Y_RNA FRMPD4 FRMPD4 NA NA NA NA NA NA -Y_RNA(10649)/FRMPD4(72891)--FRMPD4 BS_1G3WYEN3 -0.162236315085263 1.74661477191371 1.74661477191371 NA no change no change no change NA X:12065575 X:12498680 ARRIBA other 2 0 medium [],deletion Y_RNA FRMPD4 FRMPD4 NA NA NA NA NA NA -Y_RNA(10649)/FRMPD4(72891)--FRMPD4 BS_27QE6BV7 8.96745159332511 1.79054435972073 1.79054435972073 NA differentially expressed no change no change NA X:12065575 X:12498680 ARRIBA other 3 0 high [],deletion Y_RNA FRMPD4 FRMPD4 NA NA NA NA NA NA -Y_RNA(10649)/FRMPD4(72891)--FRMPD4 BS_3T6X4BPC -0.162236315085263 1.55106089211761 1.55106089211761 NA no change no change no change NA X:12065575 X:12498680 ARRIBA other 2 0 medium [],deletion Y_RNA FRMPD4 FRMPD4 NA NA NA NA NA NA -Y_RNA(10649)/FRMPD4(72891)--FRMPD4 BS_KZPR01BD -0.162236315085263 1.89842203803568 1.89842203803568 NA no change no change no change NA X:12065575 X:12498680 ARRIBA other 9 0 medium [],deletion Y_RNA FRMPD4 FRMPD4 NA NA NA NA NA NA -Y_RNA(10649)/FRMPD4(72891)--FRMPD4 BS_NFRXNAFE 11.7556609802773 3.31184730892737 3.31184730892737 NA differentially expressed differentially expressed differentially expressed NA X:12065575 X:12498680 ARRIBA other 3 0 high [],deletion Y_RNA FRMPD4 FRMPD4 NA NA NA NA NA NA -Y_RNA(169811)/Y_RNA(2869)--LINC00882 BS_DGTPWJ59 11.6007624247175 -0.153703182224117 11.6007624247175 NA differentially expressed no change differentially expressed NA 3:106685809 3:106838212 ARRIBA other 4 0 medium [],duplication Y_RNA Y_RNA LINC00882 NA NA NA NA NA NA -Y_RNA(169811)/Y_RNA(2869)--LINC00882 BS_MKM0EEN1 -0.162236315085263 -0.557555919949663 -0.162236315085263 NA no change no change no change NA 3:106685809 3:106838212 ARRIBA other 2 0 medium [],duplication Y_RNA Y_RNA LINC00882 NA NA NA NA NA NA -Y_RNA(169811)/Y_RNA(2869)--LINC00882 BS_XF0ZX2B3 -0.162236315085263 -1.32344308763762 -0.162236315085263 NA no change no change no change NA 3:106685809 3:106838212 ARRIBA other 1 2 medium [],duplication Y_RNA Y_RNA LINC00882 NA NA NA NA NA NA -Y_RNA(169811)/Y_RNA(2869)--LINC00882 BS_Z85M2R3N 8.49740252647417 -0.404942363156061 8.49740252647417 NA differentially expressed no change differentially expressed NA 3:106685809 3:106838212 ARRIBA other 2 1 medium [],duplication Y_RNA Y_RNA LINC00882 NA NA NA NA NA NA -Y_RNA(27396)/AL080315.1(27301)--LAMA2 BS_7BTZQKYY 9.14762754417382 2.88555978638548 NA NA differentially expressed differentially expressed NA NA 6:128611887 6:129049918 ARRIBA other 4 0 medium [],deletion Y_RNA AL080315.1 LAMA2 NA NA NA NA NA NA -Y_RNA(63360)/Y_RNA(109320)--LINC00882 BS_1T19NFJ8 12.1202878230809 -0.233161271343691 12.1202878230809 NA differentially expressed no change differentially expressed NA 3:106579358 3:106843256 ARRIBA other 3 0 medium [],duplication Y_RNA Y_RNA LINC00882 NA NA NA NA NA NA -YAP1--FAM118B BS_23M72ABG 3.93119706595254 1.75639507890179 NA NA differentially expressed no change NA NA 11:102223752 11:126234995 ARRIBA in-frame 63 9 high [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA -YAP1--FAM118B BS_23M72ABG 3.93119706595254 1.75639507890179 NA NA differentially expressed no change NA NA 11:102223752 11:126240792 ARRIBA in-frame 1 1 medium [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA -YAP1--FAM118B BS_23M72ABG 3.93119706595254 1.75639507890179 NA NA differentially expressed no change NA NA 11:102206074 11:126234995 ARRIBA frameshift 1 1 medium [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA -YAP1--FAM118B BS_D9GEXXHX 3.96489645292019 1.16332409986271 NA NA differentially expressed no change NA NA 11:102223752 11:126234995 ARRIBA in-frame 44 4 high [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA -YAP1--FAM118B BS_D9GEXXHX 3.96489645292019 1.16332409986271 NA NA differentially expressed no change NA NA 11:102223752 11:126240792 ARRIBA in-frame 1 1 medium [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA -YAP1--FAM118B BS_KR4MP5ET 3.94076203531845 1.85425407841019 NA NA differentially expressed no change NA NA 11:102223752 11:126234995 ARRIBA in-frame 68 6 high [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA -YAP1--FAM118B BS_KR4MP5ET 3.94076203531845 1.85425407841019 NA NA differentially expressed no change NA NA 11:102223752 11:126240792 ARRIBA in-frame 1 1 medium [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA -YAP1--FAM118B BS_KR4MP5ET 3.94076203531845 1.85425407841019 NA NA differentially expressed no change NA NA 11:102206074 11:126234995 ARRIBA frameshift 1 0 low [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA -YAP1--FAM118B BS_PN2CE34A 3.58908079612563 0.966445780056633 NA NA differentially expressed no change NA NA 11:102223752 11:126234995 ARRIBA in-frame 3 1 high [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA -YAP1--MAML2 BS_1J2WQ08M 3.13331937181179 4.94291467230944 NA NA differentially expressed differentially expressed NA NA 11:102111169 11:96093517 ARRIBA in-frame 37 2 high [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion -YAP1--MAML2 BS_3DCBDJAT 3.21413289676854 4.76987446671968 NA NA differentially expressed differentially expressed NA NA 11:102206074 11:96093517 ARRIBA in-frame 27 2 high [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion -YAP1--MAML2 BS_3DCBDJAT 3.21413289676854 4.76987446671968 NA NA differentially expressed differentially expressed NA NA 11:102209564 11:96093517 ARRIBA in-frame 11 2 high [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion -YAP1--MAML2 BS_3DCBDJAT 3.21413289676854 4.76987446671968 NA NA differentially expressed differentially expressed NA NA 11:102206086 11:96093517 ARRIBA in-frame 11 2 high [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion -YAP1--MAML2 BS_QP6MSKRE 3.5565149138431 5.16311107103836 NA NA differentially expressed differentially expressed NA NA 11:102111169 11:96093517 ARRIBA in-frame 40 9 high [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion -YAP1--MAML2 BS_WYERXS4G 3.01484740389624 5.64671751725929 NA NA differentially expressed differentially expressed NA NA 11:102206074 11:96093517 ARRIBA in-frame 17 3 high [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion -YAP1--MAML2 BS_WYERXS4G 3.01484740389624 5.64671751725929 NA NA differentially expressed differentially expressed NA NA 11:102206086 11:96093517 ARRIBA in-frame 5 3 high [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion -YAP1--MAMLD1 BS_V4W81SFC 3.25980173175086 2.52430226610353 NA NA differentially expressed differentially expressed NA NA 11:102206074 X:150469745 ARRIBA in-frame 32 5 high [INTERCHROMOSOMAL[chr11--chrX]],translocation YAP1 NA MAMLD1 NA TumorSuppressorGene, Oncogene NA NA NA NA -YAP1--MAMLD1 BS_V4W81SFC 3.25980173175086 2.52430226610353 NA NA differentially expressed differentially expressed NA NA 11:102209564 X:150469745 ARRIBA in-frame 12 5 high [INTERCHROMOSOMAL[chr11--chrX]],translocation YAP1 NA MAMLD1 NA TumorSuppressorGene, Oncogene NA NA NA NA -YAP1--MAMLD1 BS_V4W81SFC 3.25980173175086 2.52430226610353 NA NA differentially expressed differentially expressed NA NA 11:102206086 X:150469745 ARRIBA in-frame 8 5 high [INTERCHROMOSOMAL[chr11--chrX]],translocation YAP1 NA MAMLD1 NA TumorSuppressorGene, Oncogene NA NA NA NA -YLPM1--AL008638.6(23925)/AL008638.1(12534) BS_ZVZDDW2G 0.0445904308573317 NA NA NA no change NA NA NA 14:74799697 22:27130944 ARRIBA frameshift 14 2 high [],translocation YLPM1 NA AL008638.6 AL008638.1 NA NA NA NA NA -YTHDC2(95869)/AC106789.1(364852)--DNAJC21 BS_KE56MMY0 0.0339508020651109 1.11570133534323 NA NA no change no change NA NA 5:113691154 5:34950170 ARRIBA other 4 0 medium [],duplication YTHDC2 AC106789.1 DNAJC21 NA NA NA NA NA NA -YWHAE--NLRP1 BS_M0QYNVK8 -0.800677570061718 -0.90985045421288 NA NA no change no change NA NA 17:1400047 17:5584500 ARRIBA frameshift 55 4 high [INTRACHROMOSOMAL[chr17:4.10Mb]],duplication YWHAE NA NLRP1 NA CosmicCensus, Oncogene NA NA NA NA -YY1AP1--AL121899.1(66860)/TGM3(15990) BS_49FQXT2E 1.15335661651825 NA NA 0.435952690999929 no change NA NA no change 1:155668627 20:2280011 ARRIBA frameshift 2 1 medium [],translocation YY1AP1 NA AL121899.1 TGM3 NA NA NA TumorSuppressorGene NA -YY1AP1--HAPLN2 BS_A3QZB9Y2 1.1435984403336 -3.36711762217061 NA NA no change differentially expressed NA NA 1:155688071 1:156623467 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.93Mb]],inversion YY1AP1 NA HAPLN2 NA NA NA NA NA NA -Z68871.1(4877)/RAB40AL(26237)--LINC00630 BS_NDN62H0S NA 4.02628267303203 0.162575759604045 NA NA differentially expressed no change NA X:102911035 X:102839801 ARRIBA other 2 0 medium [],duplication Z68871.1 RAB40AL LINC00630 NA NA NA NA NA NA -Z82196.2(159222)/ISX-AS1(113578)--ISX-AS1 BS_7ZV3DPGT NA 14.3370153123112 14.3370153123112 NA NA differentially expressed differentially expressed NA 22:34884141 22:35002862 ARRIBA other 5 3 medium [],duplication Z82196.2 ISX-AS1 ISX-AS1 NA NA NA NA NA NA -Z82196.2(159222)/ISX-AS1(113578)--ISX-AS1 BS_M7QJ8VF0 NA 17.2058935554463 17.2058935554463 NA NA differentially expressed differentially expressed NA 22:34884141 22:35002862 ARRIBA other 5 2 medium [],duplication Z82196.2 ISX-AS1 ISX-AS1 NA NA NA NA NA NA -Z93930.2--LARGE1 BS_1HQ76V6D NA NA NA NA NA NA NA NA 22:28822179 22:33856802 ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr22:4.31Mb]],inversion Z93930.2 NA LARGE1 NA NA NA NA NA NA -Z97055.2--SH3BP1 BS_49BQS7Z6 NA 0.324692868584186 NA NA NA no change NA NA 22:43812833 22:37650152 ARRIBA other 24 2 high [INTRACHROMOSOMAL[chr22:6.15Mb]],duplication Z97055.2 NA SH3BP1 NA NA NA NA NA NA -Z97055.2--SH3BP1 BS_GXTFW99H NA 0.0376401239578608 NA NA NA no change NA NA 22:43812833 22:37650152 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr22:6.15Mb]],duplication Z97055.2 NA SH3BP1 NA NA NA NA NA NA -Z97634.1--AXIN1 BS_MN5XVP5A NA 1.39698670058638 NA NA NA no change NA NA 16:383429 16:314683 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr16:0.03Mb],LOCAL_INVERSION:+:-:[29424]],inversion Z97634.1 NA AXIN1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_1T19NFJ8 NA -0.171766969994516 NA NA NA no change NA NA X:146955175 X:146916390 ARRIBA other 26 6 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA -Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_2XD3MNKD NA -0.171766969994516 NA NA NA no change NA NA X:146955175 X:146916390 ARRIBA other 22 2 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA -Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_2XD3MNKD NA -0.171766969994516 NA NA NA no change NA NA X:146955175 X:146916390 ARRIBA other 13 2 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA -Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_39CGACC7 NA -0.171766969994516 NA NA NA no change NA NA X:146955175 X:146916390 ARRIBA other 15 0 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA -Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_92VDQ0NE NA -0.171766969994516 NA NA NA no change NA NA X:146955175 X:146916390 ARRIBA other 14 3 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA -Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_AMZ70B6F NA 2.87706731257158 NA NA NA differentially expressed NA NA X:146955175 X:146916390 ARRIBA other 14 0 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA -Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_BKR4E30C NA -0.171766969994516 NA NA NA no change NA NA X:146955175 X:146916390 ARRIBA other 9 0 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA -Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_K5802F84 NA -0.171766969994516 NA NA NA no change NA NA X:146955175 X:146916390 ARRIBA other 20 1 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA -Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_NT9NZYFD NA -0.171766969994516 NA NA NA no change NA NA X:146955175 X:146916390 ARRIBA other 10 4 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA -Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_S69QZAJR NA 0.974049792075635 NA NA NA no change NA NA X:146955175 X:146916390 ARRIBA other 10 0 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA -Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_W18SF91A NA -0.171766969994516 NA NA NA no change NA NA X:146955175 X:146916390 ARRIBA other 16 0 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA -Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_W18SF91A NA -0.171766969994516 NA NA NA no change NA NA X:146955175 X:146916390 ARRIBA other 7 0 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA -ZBBX--ZBBX BS_NT9NZYFD -0.489164830506882 -0.489164830506882 NA NA no change no change NA NA 3:167282238 3:167373787 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.14Mb]],duplication/non-canonical_splicing ZBBX NA ZBBX NA NA NA NA NA NA -ZBED3-AS1(13577)/PDE8B(29963)--LHFPL2 BS_M85CXHDV 3.04567358163418 5.70649823034219 0.295052258846313 NA differentially expressed differentially expressed no change NA 5:77180486 5:78564871 ARRIBA other 4 1 high [],inversion ZBED3-AS1 PDE8B LHFPL2 NA NA NA NA NA NA -ZBED4(5155)/ALG12(4996)--LPA BS_1HQ76V6D 3.66339682172661 24.2849223355613 0.499615586567046 NA differentially expressed differentially expressed no change NA 22:49895233 6:160650497 ARRIBA other 3 0 high [],translocation ZBED4 ALG12 LPA NA TranscriptionFactor NA NA NA NA -ZBED6--CENPF BS_QWTE1CWR 2.24758066327826 2.78552101024273 NA NA differentially expressed differentially expressed NA NA 1:203830203 1:214639921 ARRIBA in-frame 6 0 high [INTRACHROMOSOMAL[chr1:10.75Mb]],deletion ZBED6 NA CENPF NA TranscriptionFactor Oncogene NA NA NA -ZBED6--CENPF BS_WKESC3XN 5.37576392629314 3.50109377747469 NA NA differentially expressed differentially expressed NA NA 1:203830203 1:214639921 ARRIBA in-frame 23 2 high [INTRACHROMOSOMAL[chr1:10.75Mb]],deletion ZBED6 NA CENPF NA TranscriptionFactor Oncogene NA NA NA -ZBTB10--COL22A1 BS_1AYRM596 5.09826345921462 2.37421588804932 NA NA differentially expressed differentially expressed NA NA 8:80514008 8:138821411 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr8:58.06Mb]],inversion ZBTB10 NA COL22A1 NA TranscriptionFactor NA NA NA NA -ZBTB16--FXYD6 BS_Y3G1X98S 4.77936016429413 -1.67749031366587 NA NA differentially expressed no change NA NA 11:114187038 11:117842781 ARRIBA in-frame 7 0 medium [INTRACHROMOSOMAL[chr11:3.59Mb]],inversion ZBTB16 NA FXYD6 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -ZBTB16--FXYD6-FXYD2 BS_Y3G1X98S 4.77936016429413 0.0277949120762977 NA NA differentially expressed no change NA NA 11:114187038 11:117842781 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr11:3.57Mb]],inversion ZBTB16 NA FXYD6-FXYD2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -ZBTB20--LINC02044 BS_6JHXXVR7 6.584255568537 NA NA NA differentially expressed NA NA NA 3:115023025 3:113165206 ARRIBA other 14 0 medium [INTRACHROMOSOMAL[chr3:1.15Mb]],inversion/3'-3' ZBTB20 NA LINC02044 NA TranscriptionFactor NA NA NA NA -ZBTB20--LINC02044 BS_KE56MMY0 5.35011766377649 NA NA NA differentially expressed NA NA NA 3:115023025 3:113165206 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr3:1.15Mb]],inversion/3'-3' ZBTB20 NA LINC02044 NA TranscriptionFactor NA NA NA NA -ZBTB38--ADAMTSL1 BS_893A91ZM 1.63421251360628 5.95056295445741 NA NA no change differentially expressed NA NA 3:141386937 9:18082743 ARRIBA other 7 0 high [INTERCHROMOSOMAL[chr3--chr9]],translocation/5'-5' ZBTB38 NA ADAMTSL1 NA TranscriptionFactor NA NA NA NA -ZBTB44--TTC28 BS_J70GK8SM 3.0169221921101 7.04995320326815 NA NA differentially expressed differentially expressed NA NA 11:130236793 22:28030366 ARRIBA in-frame 4 1 high [INTERCHROMOSOMAL[chr11--chr22]],translocation ZBTB44 NA TTC28 NA TranscriptionFactor NA NA NA NA -ZBTB44--TTC28 BS_J70GK8SM 3.0169221921101 7.04995320326815 NA NA differentially expressed differentially expressed NA NA 11:130237010 22:28030366 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr11--chr22]],translocation ZBTB44 NA TTC28 NA TranscriptionFactor NA NA NA NA -ZBTB7A--AC096734.1(37099)/RN7SKP82(147962) BS_K17VQECG -0.436940759647989 NA NA NA no change NA NA NA 19:4066682 4:42744434 ARRIBA other 8 0 high [],translocation ZBTB7A NA AC096734.1 RN7SKP82 TranscriptionFactor NA NA NA NA -ZBTB7B--UBAP2L BS_Y3G1X98S 3.3323858918427 2.17859573419883 NA NA differentially expressed differentially expressed NA NA 1:155015326 1:154269855 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.73Mb]],duplication ZBTB7B NA UBAP2L NA TranscriptionFactor NA NA NA NA -ZC3H11A--CENPF BS_QWTE1CWR -1.08557703258478 2.78552101024273 NA NA no change differentially expressed NA NA 1:203830203 1:214639921 ARRIBA in-frame 6 0 high [INTRACHROMOSOMAL[chr1:10.75Mb]],deletion ZC3H11A NA CENPF NA NA Oncogene NA NA NA -ZC3H11A--CENPF BS_WKESC3XN 0.182420663067193 3.50109377747469 NA NA no change differentially expressed NA NA 1:203830203 1:214639921 ARRIBA in-frame 23 2 high [INTRACHROMOSOMAL[chr1:10.75Mb]],deletion ZC3H11A NA CENPF NA NA Oncogene NA NA NA -ZC3H3--LINC02237(74256)/AC022360.1(4229) BS_HZE3KYZ1 0.750057922308966 NA NA NA no change NA NA NA 8:143475398 8:111617229 ARRIBA frameshift 3 0 medium [],inversion ZC3H3 NA LINC02237 AC022360.1 NA NA NA NA NA -ZC3H7A--AC090092.1(69717)/AC100767.2(97238) BS_6JHXXVR7 0.49138109006796 NA NA NA no change NA NA NA 16:11759669 11:23272878 ARRIBA other 14 4 medium [],translocation ZC3H7A NA AC090092.1 AC100767.2 NA NA NA NA NA -ZC3H7B--MTMR3 BS_5P1TN10Z -0.528726097675242 1.93200526364518 NA NA no change no change NA NA 22:41301772 22:29957036 ARRIBA other 10 0 high [INTRACHROMOSOMAL[chr22:11.27Mb]],duplication ZC3H7B NA MTMR3 NA NA Oncogene NA NA NA -ZC3H7B--MTMR3 BS_TV5B86ZD -1.58474922874906 1.62214608928249 NA NA no change no change NA NA 22:41301772 22:29957036 ARRIBA other 12 1 high [INTRACHROMOSOMAL[chr22:11.27Mb]],duplication ZC3H7B NA MTMR3 NA NA Oncogene NA NA NA -ZC3HAV1--CNTNAP2 BS_T1YHK6B7 4.04914727114579 -2.13723612333253 NA NA differentially expressed differentially expressed NA NA 7:139064879 7:148383649 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:7.01Mb]],inversion ZC3HAV1 NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA -ZC4H2--AL627224.1(8097)/FOXR2(15197) BS_YBJBSRHV -4.16785796253817 NA NA 435.341252972891 differentially expressed NA NA differentially expressed X:64976325 X:55608203 ARRIBA frameshift 26 0 high [],inversion ZC4H2 NA AL627224.1 FOXR2 NA NA NA TranscriptionFactor, Oncogene NA -ZC4H2--FOXR2 BS_YBJBSRHV -4.16785796253817 435.341252972891 NA NA differentially expressed differentially expressed NA NA X:64976325 X:55608203 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chrX:9.29Mb]],inversion ZC4H2 NA FOXR2 NA NA TranscriptionFactor, Oncogene NA NA NA -ZCCHC8--ROS1 BS_52C576HH 0.000386645338917881 3.13279079831004 NA NA no change differentially expressed NA NA 12:122498827 6:117320030 ARRIBA in-frame 10 1 high [Cosmic,ChimerKB,INTERCHROMOSOMAL[chr12--chr6]],translocation ZCCHC8 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA -ZCWPW2--ZCWPW2 BS_6MY8W3H0 3.62681400309964 3.62681400309964 NA NA differentially expressed differentially expressed NA NA 3:28521116 3:28413056 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.19Mb]],duplication/non-canonical_splicing ZCWPW2 NA ZCWPW2 NA NA NA NA NA NA -ZDHHC15--CASK BS_37GTVG4N 4.75421321444187 5.90286676925301 NA NA differentially expressed differentially expressed NA NA X:75417087 X:41621431 ARRIBA frameshift 15 1 high [INTRACHROMOSOMAL[chrX:33.44Mb]],inversion/5'-5' ZDHHC15 NA CASK NA NA Kinase, Kinase NA NA NA -ZDHHC15--IL1RAPL2 BS_M0QYNVK8 4.14989002834488 0.30303306155375 NA NA differentially expressed no change NA NA X:75450802 X:104658895 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chrX:29.04Mb]],inversion ZDHHC15 NA IL1RAPL2 NA NA NA NA NA NA -ZDHHC15--ZDHHC15 BS_1EBQ3T20 5.20870963803116 5.20870963803116 NA NA differentially expressed differentially expressed NA NA X:75379120 X:75505847 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.16Mb]],duplication/non-canonical_splicing ZDHHC15 NA ZDHHC15 NA NA NA NA NA NA -ZDHHC15--ZDHHC15 BS_G9XE3N9T 3.52039089017628 3.52039089017628 NA NA differentially expressed differentially expressed NA NA X:75417087 X:75431520 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.16Mb]],duplication/non-canonical_splicing ZDHHC15 NA ZDHHC15 NA NA NA NA NA NA -ZDHHC2--MICU3 BS_51RA1PGE 2.08928251540793 -1.43124174904796 NA NA differentially expressed no change NA NA 8:17186425 8:17098458 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr8:0.03Mb],LOCAL_REARRANGEMENT:+:[33385]],duplication ZDHHC2 NA MICU3 NA TumorSuppressorGene NA NA NA NA -ZDHHC20--LINC00374(126542)/AL161423.1(17854) BS_WGK8ZMVA -0.447098006034497 -0.0852532952412018 NA NA no change no change NA NA 13:21420179 13:58359659 ARRIBA frameshift 1 1 medium [],inversion ZDHHC20 NA LINC00374 AL161423.1 NA NA NA NA NA -ZDHHC20--USP12 BS_QWTE1CWR -0.751356792624626 -2.97493329886689 NA NA no change differentially expressed NA NA 13:21459054 13:27110442 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr13:5.61Mb]],inversion/5'-5' ZDHHC20 NA USP12 NA NA TumorSuppressorGene NA NA NA -ZDHHC22--AL163195.3 BS_M0QYNVK8 -0.217185885107123 NA NA NA no change NA NA NA 14:77139349 14:20584498 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr14:56.52Mb]],deletion ZDHHC22 NA AL163195.3 NA NA NA NA NA NA -ZDHHC22--RNASE11 BS_M0QYNVK8 -0.217185885107123 4.32316924122155 NA NA no change differentially expressed NA NA 14:77139349 14:20584498 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr14:56.52Mb]],deletion ZDHHC22 NA RNASE11 NA NA NA NA NA NA -ZEB1-AS1--AL163642.2(88316)/AL357172.1(115237) BS_W60RQAKK 8.46109476963745 NA NA NA differentially expressed NA NA NA 10:31319515 14:85087612 ARRIBA other 4 0 medium [],translocation ZEB1-AS1 NA AL163642.2 AL357172.1 NA NA NA NA NA -ZEB2--ARHGAP15 BS_G1Y281HX 2.01046493122374 5.66476128624578 NA NA differentially expressed differentially expressed NA NA 2:144424796 2:143624133 ARRIBA in-frame 1 1 low [GTEx,INTRACHROMOSOMAL[chr2:0.60Mb]],inversion ZEB2 NA ARHGAP15 NA Oncogene, TranscriptionFactor NA NA NA NA -ZEB2--ARHGAP15 BS_NR9FRY5T 2.77661068539252 9.16826128244073 NA NA differentially expressed differentially expressed NA NA 2:144429769 2:143435601 ARRIBA frameshift 3 0 medium [GTEx,INTRACHROMOSOMAL[chr2:0.60Mb]],inversion ZEB2 NA ARHGAP15 NA Oncogene, TranscriptionFactor NA NA NA NA -ZEB2--LINC01798 BS_TRKH2SPE 1.76368839396078 NA NA NA no change NA NA NA 2:144517278 2:66665721 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr2:77.63Mb]],inversion ZEB2 NA LINC01798 NA Oncogene, TranscriptionFactor NA NA NA NA -ZEB2--LINC01798 BS_TRKH2SPE 1.76368839396078 NA NA NA no change NA NA NA 2:144517278 2:66691672 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr2:77.63Mb]],inversion ZEB2 NA LINC01798 NA Oncogene, TranscriptionFactor NA NA NA NA -ZEB2--LINC01798 BS_TRKH2SPE 1.76368839396078 NA NA NA no change NA NA NA 2:144517278 2:66675758 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr2:77.63Mb]],inversion ZEB2 NA LINC01798 NA Oncogene, TranscriptionFactor NA NA NA NA -ZEB2--PPM1G BS_RRAEQZ97 1.74506347236632 1.08361155140069 NA NA no change no change NA NA 2:144517278 2:27387158 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr2:116.95Mb]],deletion ZEB2 NA PPM1G NA Oncogene, TranscriptionFactor NA NA NA NA -ZEB2--ZEB2 BS_MB7WN0ZB 1.60503988859396 1.60503988859396 NA NA no change no change NA NA 2:144429926 2:144431416 ARRIBA frameshift 46 4 high [SELFIE,INTRACHROMOSOMAL[chr2:0.16Mb]],inversion/5'-5' ZEB2 NA ZEB2 NA Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA -ZEB2--ZEB2 BS_MB7WN0ZB 1.60503988859396 1.60503988859396 NA NA no change no change NA NA 2:144431678 2:144429875 ARRIBA other 41 5 high [SELFIE,INTRACHROMOSOMAL[chr2:0.16Mb]],inversion/3'-3' ZEB2 NA ZEB2 NA Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA -ZFAND1--MEIOC BS_5PV5N4HQ -1.0272346607886 NA NA NA no change NA NA NA 8:81715966 17:44675647 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr8--chr17]],translocation/5'-5' ZFAND1 NA MEIOC NA NA NA NA NA NA -ZFAND3--AL138826.1 BS_4QW2S1Q8 2.92600097189906 NA NA NA differentially expressed NA NA NA 6:37820016 6:50140542 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr6:11.94Mb]],deletion ZFAND3 NA AL138826.1 NA NA NA NA NA NA -ZFAND3--AL138826.1 BS_4QW2S1Q8 2.92600097189906 NA NA NA differentially expressed NA NA NA 6:37820016 6:50117159 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:11.94Mb]],deletion ZFAND3 NA AL138826.1 NA NA NA NA NA NA -ZFAND3--AL157371.1(84031)/AL109615.3(59359) BS_6JHXXVR7 0.811803106777278 NA NA NA no change NA NA NA 6:37820016 6:43936364 ARRIBA frameshift 81 13 high [],deletion ZFAND3 NA AL157371.1 AL109615.3 NA NA NA NA NA -ZFAND3--AL157371.1(84031)/AL109615.3(59359) BS_KE56MMY0 0.675844011358797 NA NA NA no change NA NA NA 6:37820016 6:43936364 ARRIBA frameshift 14 1 high [],deletion ZFAND3 NA AL157371.1 AL109615.3 NA NA NA NA NA -ZFAND3--MRPS18A BS_NJ4WPQVK 1.5018172167581 2.15919066543355 NA NA no change differentially expressed NA NA 6:38116739 6:43681120 ARRIBA in-frame 12 0 high [INTRACHROMOSOMAL[chr6:5.52Mb]],inversion ZFAND3 NA MRPS18A NA NA NA NA NA NA -ZFAT--AC079098.1(127128)/AC013546.1(196198) BS_WMEHNDSK 15.2368026122682 NA NA NA differentially expressed NA NA NA 8:134637461 8:136293250 ARRIBA frameshift 14 2 high [],inversion ZFAT NA AC079098.1 AC013546.1 TranscriptionFactor NA NA NA NA -ZFAT--AC105180.1(62133)/ZFAT(95208) BS_WMEHNDSK 15.2368026122682 NA NA 15.2368026122682 differentially expressed NA NA differentially expressed 8:134483272 8:134382580 ARRIBA other 97 34 high [],inversion ZFAT NA AC105180.1 ZFAT TranscriptionFactor NA NA TranscriptionFactor NA -ZFAT--CASC11 BS_WMEHNDSK 15.2368026122682 68.0048619121525 NA NA differentially expressed differentially expressed NA NA 8:134501829 8:127733959 ARRIBA other 6 3 medium [INTRACHROMOSOMAL[chr8:6.74Mb]],deletion ZFAT NA CASC11 NA TranscriptionFactor NA NA NA NA -ZFAT--HNF4G(474987)/RNU2-54P(223713) BS_WMEHNDSK 15.2368026122682 -1.13175192677142 NA NA differentially expressed no change NA NA 8:134509996 8:76041830 ARRIBA other 14 1 medium [],inversion ZFAT NA HNF4G RNU2-54P TranscriptionFactor TranscriptionFactor NA NA NA -ZFAT--WRN BS_R439VVPK 0.955849442577341 2.80737464776234 NA NA no change differentially expressed NA NA 8:134608729 8:31150341 ARRIBA in-frame 4 1 high [INTRACHROMOSOMAL[chr8:103.30Mb]],inversion ZFAT NA WRN NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA -ZFHX4--ZFHX4 BS_C51RB0YR 6.0419515435189 6.0419515435189 NA NA differentially expressed differentially expressed NA NA 8:76856300 8:76833338 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.19Mb]],duplication/non-canonical_splicing ZFHX4 NA ZFHX4 NA TranscriptionFactor TranscriptionFactor NA NA NA -ZFP3--ADORA2B BS_23QW0BBA 1.47769699279449 0.849594567076617 NA NA no change no change NA NA 17:5078575 17:15974679 ARRIBA other 7 0 high [INTRACHROMOSOMAL[chr17:10.85Mb]],deletion ZFP3 NA ADORA2B NA TranscriptionFactor NA NA NA NA -ZFPM2--AC027031.2 BS_VMQMGSJY 1.28227291925511 NA NA NA no change NA NA NA 8:105634357 8:106272366 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr8:0.47Mb]],inversion/3'-3' ZFPM2 NA AC027031.2 NA TranscriptionFactor NA NA NA NA -ZFPM2--PEX5L BS_1XJ73KBQ 0.936864478988185 0.438051736010992 NA NA no change no change NA NA 8:105444381 3:179971665 ARRIBA frameshift 11 1 high [INTERCHROMOSOMAL[chr8--chr3]],translocation ZFPM2 NA PEX5L NA TranscriptionFactor NA NA NA NA -ZFPM2--PEX5L BS_1XJ73KBQ 0.936864478988185 0.438051736010992 NA NA no change no change NA NA 8:105444381 3:179898246 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr8--chr3]],translocation ZFPM2 NA PEX5L NA TranscriptionFactor NA NA NA NA -ZFPM2--PEX5L BS_1XJ73KBQ 0.936864478988185 0.438051736010992 NA NA no change no change NA NA 8:105444381 3:179887784 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr8--chr3]],translocation ZFPM2 NA PEX5L NA TranscriptionFactor NA NA NA NA -ZFX--AL807742.1 BS_C41DJZ1F 6.15752660752704 NA NA NA differentially expressed NA NA NA X:24179770 X:21300945 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chrX:2.77Mb]],inversion ZFX NA AL807742.1 NA TranscriptionFactor NA NA NA NA -ZFX--CXorf58 BS_PZVHMSYN 4.42567598706671 21.9816700706208 NA NA differentially expressed differentially expressed NA NA X:24152830 X:23935196 ARRIBA other 6 0 high [INTRACHROMOSOMAL[chrX:0.21Mb]],duplication ZFX NA CXorf58 NA TranscriptionFactor NA NA NA NA -ZFX--CXorf58 BS_PZVHMSYN 4.42567598706671 21.9816700706208 NA NA differentially expressed differentially expressed NA NA X:24149794 X:23935196 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chrX:0.21Mb]],duplication ZFX NA CXorf58 NA TranscriptionFactor NA NA NA NA -ZHX2--AF117829.1 BS_HZRM07TW -2.05800666610263 NA NA NA differentially expressed NA NA NA 8:122781946 8:89609285 ARRIBA other 5 3 high [INTRACHROMOSOMAL[chr8:33.02Mb]],duplication/5'-5' ZHX2 NA AF117829.1 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA -ZHX2--KRT8P4(194214)/AF117829.1(124) BS_HZRM07TW -2.05800666610263 5.07687377689337 NA NA differentially expressed differentially expressed NA NA 8:122781946 8:89609285 ARRIBA other 2 0 medium [],duplication ZHX2 NA KRT8P4 AF117829.1 TumorSuppressorGene, TranscriptionFactor NA NA NA NA -ZIC1--EVI5 BS_GCQFGDTX 2.00244736701512 5.16899343314151 NA NA differentially expressed differentially expressed NA NA 3:147421559 1:92736627 ARRIBA other 13 3 high [INTERCHROMOSOMAL[chr3--chr1]],translocation ZIC1 NA EVI5 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA -ZMIZ1--AL355863.1(205740)/BTBD7P2(11790) BS_R439VVPK 1.8303081144495 NA NA 15.1462269931822 no change NA NA differentially expressed 10:79139777 10:111310988 ARRIBA other 3 0 medium [],deletion ZMIZ1 NA AL355863.1 BTBD7P2 Oncogene NA NA NA NA -ZMYM4--KNCN BS_AZN38B7V 3.23296133509009 1.47685365993952 NA NA differentially expressed no change NA NA 1:35269085 1:46550002 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:11.12Mb]],inversion ZMYM4 NA KNCN NA NA NA NA NA NA -ZNF100--PIP4K2A BS_9V633J1X 5.08108567040961 -0.112228620965917 NA NA differentially expressed no change NA NA 19:21767548 10:22600103 ARRIBA other 6 2 medium [INTERCHROMOSOMAL[chr19--chr10]],translocation/3'-3' ZNF100 NA PIP4K2A NA TranscriptionFactor NA NA NA NA -ZNF100--PIP4K2A BS_NKEAAFMW 3.76861445544794 0.0379288779431546 NA NA differentially expressed no change NA NA 19:21767548 10:22600103 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr19--chr10]],translocation/3'-3' ZNF100 NA PIP4K2A NA TranscriptionFactor NA NA NA NA -ZNF121--POLRMT BS_8PNA0V6R 5.55888026177105 -2.04582285102063 NA NA differentially expressed differentially expressed NA NA 19:9562825 19:628290 ARRIBA frameshift 17 0 medium [INTRACHROMOSOMAL[chr19:8.93Mb]],inversion/5'-5' ZNF121 NA POLRMT NA TranscriptionFactor NA NA NA NA -ZNF143--MIR4299(5211)/AC131935.2(63399) BS_07ANYSYQ 0.0919084587033184 NA NA NA no change NA NA NA 11:9512596 11:11661933 ARRIBA frameshift 2 0 high [],inversion ZNF143 NA MIR4299 AC131935.2 TranscriptionFactor NA NA NA NA -ZNF148--NFKBIZ(9061)/LINC02085(70776) BS_FAQQ0GCQ 5.2927186994275 3.81669446862688 NA NA differentially expressed differentially expressed NA NA 3:125313308 3:101870083 ARRIBA frameshift 3 0 high [],deletion ZNF148 NA NFKBIZ LINC02085 TranscriptionFactor NA NA NA NA -ZNF160--ZNF415 BS_06AMMCXR 1.82570990644767 0.627831527944528 NA NA no change no change NA NA 19:53103265 19:53122743 ARRIBA other 6 0 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:-:[4443]],duplication ZNF160 NA ZNF415 NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF160--ZNF415 BS_06AMMCXR 1.82570990644767 0.627831527944528 NA NA no change no change NA NA 19:53103265 19:53109908 ARRIBA other 3 0 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:-:[4443]],duplication ZNF160 NA ZNF415 NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF160--ZNF415 BS_06AMMCXR 1.82570990644767 0.627831527944528 NA NA no change no change NA NA 19:53103265 19:53122616 ARRIBA other 1 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:-:[4443]],duplication ZNF160 NA ZNF415 NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF213-AS1--FAM200A BS_KE56MMY0 -0.577435174664384 0.459467960637258 NA NA no change no change NA NA 16:3126178 7:99558358 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr16--chr7]],translocation ZNF213-AS1 NA FAM200A NA NA NA NA NA NA -ZNF224--CDC14C(177350)/AC091730.1(126774) BS_MM20BVW9 0.436527694328666 1.53076914918955 NA NA no change no change NA NA 19:44101225 7:49103363 ARRIBA frameshift 2 1 high [],translocation ZNF224 NA CDC14C AC091730.1 TranscriptionFactor NA NA NA NA -ZNF236--FRG1CP(21750)/FRG1DP(455976) BS_PNYN0AYD 6.6672891638889 NA NA NA differentially expressed NA NA NA 18:76895285 20:28624414 ARRIBA frameshift 3 0 medium [],translocation ZNF236 NA FRG1CP FRG1DP TranscriptionFactor NA NA NA NA -ZNF24--CELF4 BS_JRYJGYC4 1.63318097084429 -1.44810608345238 NA NA no change no change NA NA 18:35344370 18:37253938 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr18:1.90Mb]],duplication ZNF24 NA CELF4 NA TranscriptionFactor NA NA NA NA -ZNF24--CELF4 BS_JRYJGYC4 1.63318097084429 -1.44810608345238 NA NA no change no change NA NA 18:35344370 18:37273163 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr18:1.90Mb]],duplication ZNF24 NA CELF4 NA TranscriptionFactor NA NA NA NA -ZNF26--FAM135B BS_TGS109T3 4.2269665246008 1.3843591611601 NA NA differentially expressed no change NA NA 12:132986873 8:138310920 ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr12--chr8]],translocation ZNF26 NA FAM135B NA TranscriptionFactor CosmicCensus NA NA NA -ZNF266--SEPT9 BS_1D6PZNKN 0.56888631010692 3.54666123447546 NA NA no change differentially expressed NA NA 19:9425437 17:77437543 ARRIBA other 18 1 medium [INTERCHROMOSOMAL[chr19--chr17]],translocation ZNF266 NA SEPT9 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA -ZNF268--ZNF10 BS_THSPSG2Z 4.58829407579461 1.40138874831818 NA NA differentially expressed no change NA NA 12:133182030 12:133144434 ARRIBA frameshift 3 2 high [HGNC_GENEFAM,INTRACHROMOSOMAL[chr12:0.02Mb],LOCAL_REARRANGEMENT:+:[21944]],duplication ZNF268 NA ZNF10 NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF268--ZNF10 BS_THSPSG2Z 4.58829407579461 1.40138874831818 NA NA differentially expressed no change NA NA 12:133182030 12:133139199 ARRIBA frameshift 1 2 high [HGNC_GENEFAM,INTRACHROMOSOMAL[chr12:0.02Mb],LOCAL_REARRANGEMENT:+:[21944]],duplication ZNF268 NA ZNF10 NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF280D--TCF12 BS_11WY983P 1.45405480754157 6.04987780582381 NA NA no change differentially expressed NA NA 15:56917065 15:57091789 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_INVERSION:-:+:[52]],inversion ZNF280D NA TCF12 NA TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -ZNF280D--TCF12 BS_11WY983P 1.45405480754157 6.04987780582381 NA NA no change differentially expressed NA NA 15:56917540 15:57091789 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_INVERSION:-:+:[52]],inversion ZNF280D NA TCF12 NA TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -ZNF286A--FOXO3 BS_BVSW4GTG 5.36957828719003 2.95024003948143 NA NA differentially expressed differentially expressed NA NA 17:15701240 6:108561086 ARRIBA in-frame 5 0 medium [INTERCHROMOSOMAL[chr17--chr6]],translocation ZNF286A NA FOXO3 NA TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -ZNF317--LINC01823(1183452)/AC062020.1(85167) BS_4B0BAVTX 0.949068537508428 NA NA -0.0610228709485396 no change NA NA no change 19:9140592 2:122980154 ARRIBA other 7 0 high [],translocation ZNF317 NA LINC01823 AC062020.1 TranscriptionFactor NA NA NA NA -ZNF318--LINC01493(389602)/AC021723.1(97610) BS_6JHXXVR7 2.5857829267814 NA NA NA differentially expressed NA NA NA 6:43348324 11:39063843 ARRIBA frameshift 12 1 high [],translocation ZNF318 NA LINC01493 AC021723.1 Oncogene, TranscriptionFactor NA NA NA NA -ZNF329--TEX9 BS_AZN38B7V 1.80503629390818 1.91931860988588 NA NA no change no change NA NA 19:58142557 15:56373441 ARRIBA other 7 0 high [INTERCHROMOSOMAL[chr19--chr15]],translocation ZNF329 NA TEX9 NA TranscriptionFactor NA NA NA NA -ZNF337--WWP2 BS_PNYN0AYD -0.54734124968373 2.54022066200063 NA NA no change differentially expressed NA NA 20:25685567 16:69902868 ARRIBA frameshift 13 0 high [INTERCHROMOSOMAL[chr20--chr16]],translocation/5'-5' ZNF337 NA WWP2 NA TranscriptionFactor NA NA NA NA -ZNF33A--SKINT1L BS_8NY9J9NQ 1.10206597235612 NA NA NA no change NA NA NA 10:38054511 1:48128573 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr10--chr1]],translocation ZNF33A NA SKINT1L NA TranscriptionFactor NA NA NA NA -ZNF33B--AL583859.2(289011)/AL136452.1(24863) BS_84XCR9GG -0.138712825396424 NA NA NA no change NA NA NA 10:42631929 10:10751360 ARRIBA frameshift 1 1 high [],deletion ZNF33B NA AL583859.2 AL136452.1 TranscriptionFactor NA NA NA NA -ZNF362--MYSM1(14740)/AL136985.3(777) BS_RCCN63K6 2.48902822497629 -0.149781621030764 NA NA differentially expressed no change NA NA 1:33276594 1:58714832 ARRIBA frameshift 3 0 medium [],deletion ZNF362 NA MYSM1 AL136985.3 TranscriptionFactor TranscriptionFactor NA NA NA -ZNF37BP--AL137026.1 BS_TXZ7KHTQ 2.16499783428285 NA NA NA differentially expressed NA NA NA 10:42550557 10:44283288 ARRIBA other 13 1 high [INTRACHROMOSOMAL[chr10:1.73Mb]],duplication ZNF37BP NA AL137026.1 NA NA NA NA NA NA -ZNF37BP--C10orf142 BS_TXZ7KHTQ 2.16499783428285 -1.66195092737004 NA NA differentially expressed no change NA NA 10:42550557 10:44293761 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr10:1.74Mb]],duplication/5'-5' ZNF37BP NA C10orf142 NA NA NA NA NA NA -ZNF37BP--C10orf142(371)/CXCL12(75145) BS_TXZ7KHTQ 2.16499783428285 -1.66195092737004 NA -1.01097136626536 differentially expressed no change NA no change 10:42550557 10:44295020 ARRIBA other 6 11 high [],duplication ZNF37BP NA C10orf142 CXCL12 NA NA NA TumorSuppressorGene NA -ZNF384--AC018653.2(49195)/ACSM4(14103) BS_8SKZ7BRN 2.19703816662868 NA NA 44.6901588987938 differentially expressed NA NA differentially expressed 12:6670760 12:7290181 ARRIBA frameshift 17 2 high [],inversion ZNF384 NA AC018653.2 ACSM4 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -ZNF385D--ZNF385D BS_M4NVX721 2.20218652127543 2.20218652127543 NA NA differentially expressed differentially expressed NA NA 3:21510861 3:21665028 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ZNF385D NA ZNF385D NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF395--AC124290.1 BS_9755PSCS 1.50127823767272 NA NA NA no change NA NA NA 8:28386004 8:36092156 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:7.60Mb]],inversion/5'-5' ZNF395 NA AC124290.1 NA TranscriptionFactor NA NA NA NA -ZNF423--OGFOD1 BS_MKM0EEN1 3.26664534942448 1.32040297646766 NA NA differentially expressed no change NA NA 16:49855735 16:56453263 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr16:6.59Mb]],inversion ZNF423 NA OGFOD1 NA Oncogene, TranscriptionFactor NA NA NA NA -ZNF428--RNF128 BS_MV6ASWV9 0.931138559538287 -1.63273232541835 NA NA no change no change NA NA 19:43607986 X:106720784 ARRIBA frameshift 6 3 medium [INTERCHROMOSOMAL[chr19--chrX]],translocation/5'-5' ZNF428 NA RNF128 NA TranscriptionFactor NA NA NA NA -ZNF43--ERC1 BS_1D6PZNKN 7.11974294754323 2.58774696691409 NA NA differentially expressed differentially expressed NA NA 19:21836036 12:1141620 ARRIBA in-frame 12 0 high [INTERCHROMOSOMAL[chr19--chr12]],translocation ZNF43 NA ERC1 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA -ZNF43--ERC1 BS_1D6PZNKN 7.11974294754323 2.58774696691409 NA NA differentially expressed differentially expressed NA NA 19:21843145 12:1141620 ARRIBA other 6 0 high [INTERCHROMOSOMAL[chr19--chr12]],translocation ZNF43 NA ERC1 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA -ZNF43--ERC1 BS_1D6PZNKN 7.11974294754323 2.58774696691409 NA NA differentially expressed differentially expressed NA NA 19:21851905 12:1141620 ARRIBA in-frame 5 0 medium [INTERCHROMOSOMAL[chr19--chr12]],translocation ZNF43 NA ERC1 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA -ZNF451--CPNE5 BS_NJ4WPQVK 2.68384792106204 -0.392062188479404 NA NA differentially expressed no change NA NA 6:57099141 6:36756298 ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr6:20.25Mb]],inversion ZNF451 NA CPNE5 NA TranscriptionFactor NA NA NA NA -ZNF486--NCOR1 BS_KN92S7YQ 6.20752391540431 1.91004319582861 NA NA differentially expressed no change NA NA 19:20167212 17:16153476 ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr19--chr17]],translocation/3'-3' ZNF486 NA NCOR1 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA -ZNF507--LINC01837 BS_QRNSKFMS 3.1672037259998 NA NA NA differentially expressed NA NA NA 19:32360618 19:31944435 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr19:0.27Mb]],inversion ZNF507 NA LINC01837 NA TranscriptionFactor NA NA NA NA -ZNF510--YWHAEP7 BS_23QW0BBA 3.31742349310347 15.4358550040268 NA NA differentially expressed differentially expressed NA NA 9:96763118 17:37874313 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr9--chr17]],translocation ZNF510 NA YWHAEP7 NA TranscriptionFactor NA NA NA NA -ZNF521--MYO18B BS_TYAYZ9ZW 0.0887810303512433 0.0954125009930125 NA NA no change no change NA NA 18:25195160 22:25952375 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr18--chr22]],translocation/5'-5' ZNF521 NA MYO18B NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene NA NA NA -ZNF521--PPM1E BS_7327SDAQ 1.16610755885942 1.82791799154809 NA NA no change no change NA NA 18:25322008 17:58955649 ARRIBA frameshift 14 5 high [INTERCHROMOSOMAL[chr18--chr17]],translocation ZNF521 NA PPM1E NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene NA NA NA -ZNF521--RAD51C BS_7327SDAQ 1.16610755885942 -0.374548440260789 NA NA no change no change NA NA 18:25322008 17:58732481 ARRIBA frameshift 3 2 high [INTERCHROMOSOMAL[chr18--chr17]],translocation ZNF521 NA RAD51C NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene NA NA NA -ZNF521--RAD51C BS_7327SDAQ 1.16610755885942 -0.374548440260789 NA NA no change no change NA NA 18:25322008 17:58732484 ARRIBA frameshift 2 2 high [INTERCHROMOSOMAL[chr18--chr17]],translocation ZNF521 NA RAD51C NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene NA NA NA -ZNF528--HAS1 BS_V3Z3DB4N 1.92563885951693 -1.40317246226098 NA NA no change no change NA NA 19:52405952 19:51717778 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr19:0.67Mb]],duplication/5'-5' ZNF528 NA HAS1 NA TranscriptionFactor NA NA NA NA -ZNF528--ZNF610(1782)/ZNF880(357) BS_BSV07M7Z 1.71357636787013 4.78166780050234 NA 3.60571950503174 no change differentially expressed NA differentially expressed 19:52406643 19:52369560 ARRIBA frameshift 3 0 medium [],duplication ZNF528 NA ZNF610 ZNF880 TranscriptionFactor TranscriptionFactor NA TranscriptionFactor NA -ZNF528--ZNF610(1782)/ZNF880(357) BS_W4HGV6E7 0.589547239395339 1.83829943154208 NA 2.1567988295027 no change no change NA differentially expressed 19:52406643 19:52369560 ARRIBA frameshift 1 1 high [],duplication ZNF528 NA ZNF610 ZNF880 TranscriptionFactor TranscriptionFactor NA TranscriptionFactor NA -ZNF529--CCDC61 BS_Q13FQ8FV 0.357509446921553 5.32261207842872 NA NA no change differentially expressed NA NA 19:36589615 19:46003008 ARRIBA other 2 0 high [INTRACHROMOSOMAL[chr19:9.39Mb]],inversion ZNF529 NA CCDC61 NA TranscriptionFactor NA NA NA NA -ZNF529--CCDC61 BS_Q13FQ8FV 0.357509446921553 5.32261207842872 NA NA no change differentially expressed NA NA 19:36589615 19:46006559 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr19:9.39Mb]],inversion ZNF529 NA CCDC61 NA TranscriptionFactor NA NA NA NA -ZNF532--AC090771.2 BS_QWTE1CWR 2.01012800559957 NA NA NA differentially expressed NA NA NA 18:58865579 18:60129500 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr18:1.14Mb]],deletion ZNF532 NA AC090771.2 NA TranscriptionFactor NA NA NA NA -ZNF532--AC090771.2 BS_QWTE1CWR 2.01012800559957 NA NA NA differentially expressed NA NA NA 18:58896622 18:60129500 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr18:1.14Mb]],deletion ZNF532 NA AC090771.2 NA TranscriptionFactor NA NA NA NA -ZNF532--PTPRN2 BS_QWTE1CWR 2.01012800559957 -0.446823940803582 NA NA differentially expressed no change NA NA 18:58865579 7:157823990 ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr18--chr7]],translocation/5'-5' ZNF532 NA PTPRN2 NA TranscriptionFactor NA NA NA NA -ZNF532--RNU6-567P(41945)/AC090771.2(64357) BS_QWTE1CWR 2.01012800559957 NA NA NA differentially expressed NA NA NA 18:58865579 18:60060676 ARRIBA other 2 1 medium [],deletion ZNF532 NA RNU6-567P AC090771.2 TranscriptionFactor NA NA NA NA -ZNF536--ARHGAP26 BS_YEQVW4ND -0.769407356845409 1.23086434464343 NA NA no change no change NA NA 19:30284141 5:143120988 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr19--chr5]],translocation ZNF536 NA ARHGAP26 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA -ZNF536--ARHGAP26 BS_YEQVW4ND -0.769407356845409 1.23086434464343 NA NA no change no change NA NA 19:30352484 5:143120988 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr19--chr5]],translocation ZNF536 NA ARHGAP26 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA -ZNF536--ARHGAP26 BS_YEQVW4ND -0.769407356845409 1.23086434464343 NA NA no change no change NA NA 19:30296243 5:143120988 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr19--chr5]],translocation ZNF536 NA ARHGAP26 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA -ZNF552--AC007228.1 BS_5CTVXVRX 1.72461033891104 NA NA NA no change NA NA NA 19:57813294 19:56613812 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr19:1.19Mb]],inversion ZNF552 NA AC007228.1 NA TranscriptionFactor NA NA NA NA -ZNF555--ZNF554 BS_DBDXCXT5 1.73416864074308 0.0940349427745439 NA NA no change no change NA NA 19:2841575 19:2832303 ARRIBA frameshift 2 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.01Mb],LOCAL_REARRANGEMENT:+:[5662]],duplication ZNF555 NA ZNF554 NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF555--ZNF554 BS_EJ9JKM1C 2.21551070972672 0.411673612775998 NA NA differentially expressed no change NA NA 19:2841575 19:2832303 ARRIBA frameshift 3 0 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.01Mb],LOCAL_REARRANGEMENT:+:[5662]],duplication ZNF555 NA ZNF554 NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF555--ZNF554 BS_GFM6EA61 2.16167207784366 0.154605119964133 NA NA differentially expressed no change NA NA 19:2841575 19:2832303 ARRIBA frameshift 2 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.01Mb],LOCAL_REARRANGEMENT:+:[5662]],duplication ZNF555 NA ZNF554 NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF555--ZNF554 BS_TA9WP4TH 3.35570700058321 1.28630414915964 NA NA differentially expressed no change NA NA 19:2841575 19:2832303 ARRIBA frameshift 3 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.01Mb],LOCAL_REARRANGEMENT:+:[5662]],duplication ZNF555 NA ZNF554 NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF555--ZNF554 BS_YB07VF1X 1.88157457343027 -0.209380599280738 NA NA no change no change NA NA 19:2841575 19:2832303 ARRIBA frameshift 5 0 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.01Mb],LOCAL_REARRANGEMENT:+:[5662]],duplication ZNF555 NA ZNF554 NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF556--TMPRSS9 BS_TQ5QHR17 -0.10790933439163 10.6198116901077 NA NA no change differentially expressed NA NA 19:2867424 19:2389761 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr19:0.44Mb]],duplication ZNF556 NA TMPRSS9 NA TranscriptionFactor NA NA NA NA -ZNF57--SF3A2 BS_KZPR01BD -0.051922266076602 -0.121112591570955 NA NA no change no change NA NA 19:2901048 19:2247594 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr19:0.65Mb]],duplication ZNF57 NA SF3A2 NA TranscriptionFactor NA NA NA NA -ZNF578--ZDHHC15 BS_37GTVG4N 4.63899539687796 4.75421321444187 NA NA differentially expressed differentially expressed NA NA 19:52453607 X:75379198 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr19--chrX]],translocation ZNF578 NA ZDHHC15 NA TranscriptionFactor NA NA NA NA -ZNF586--AC104458.1(42075)/TPI1P1(20375) BS_5CTVXVRX 3.13326893363857 NA NA 7.12783980090175 differentially expressed NA NA differentially expressed 19:57780108 1:76679414 ARRIBA other 10 1 medium [],translocation ZNF586 NA AC104458.1 TPI1P1 TranscriptionFactor NA NA NA NA -ZNF586--AC104458.1(42075)/TPI1P1(20375) BS_8ZS9F31R 3.47644649726318 NA NA 7.45956112995484 differentially expressed NA NA differentially expressed 19:57780108 1:76679414 ARRIBA other 7 4 medium [],translocation ZNF586 NA AC104458.1 TPI1P1 TranscriptionFactor NA NA NA NA -ZNF589--GABRA3 BS_TRKH2SPE -0.00924232432168245 0.59101422205068 NA NA no change no change NA NA 3:48247677 X:152364596 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr3--chrX]],translocation ZNF589 NA GABRA3 NA TranscriptionFactor NA NA NA NA -ZNF592--LINC00924(102164)/AC015574.1(28335) BS_3MS8WVNR 2.93909332337982 -0.436027605408041 NA NA differentially expressed no change NA NA 15:84784895 15:95610011 ARRIBA frameshift 14 1 high [],deletion ZNF592 NA LINC00924 AC015574.1 TranscriptionFactor NA NA NA NA -ZNF592--LINC00924(102164)/AC015574.1(28335) BS_8MA5B8Y9 2.28439892342603 -1.22607403353817 NA NA differentially expressed no change NA NA 15:84784895 15:95610011 ARRIBA frameshift 11 0 high [],deletion ZNF592 NA LINC00924 AC015574.1 TranscriptionFactor NA NA NA NA -ZNF592--LINC02254 BS_8MA5B8Y9 2.28439892342603 NA NA NA differentially expressed NA NA NA 15:84784895 15:97484126 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr15:12.56Mb]],deletion/5'-5' ZNF592 NA LINC02254 NA TranscriptionFactor NA NA NA NA -ZNF638--ZNF638 BS_7G42J2SK -0.0529734102307325 -0.0529734102307325 NA NA no change no change NA NA 2:71406262 2:71398701 ARRIBA frameshift 24 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.16Mb]],duplication/non-canonical_splicing ZNF638 NA ZNF638 NA NA NA NA NA NA -ZNF664--GTF2H3 BS_7FWZ518S 1.44062153446229 1.78748590210742 NA NA no change no change NA NA 12:123974020 12:123645455 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:0.31Mb]],duplication ZNF664 NA GTF2H3 NA TranscriptionFactor NA NA NA NA -ZNF664--GTF2H3 BS_7FWZ518S 1.44062153446229 1.78748590210742 NA NA no change no change NA NA 12:123988138 12:123645455 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:0.31Mb]],duplication ZNF664 NA GTF2H3 NA TranscriptionFactor NA NA NA NA -ZNF699--ZNF699(4906)/ZNF559(9028) BS_JXNZYGCR 8.33424197449621 8.33424197449621 NA 0.481255028485551 differentially expressed differentially expressed NA no change 19:9305072 19:9314744 ARRIBA frameshift 16 1 high [],duplication ZNF699 NA ZNF699 ZNF559 TranscriptionFactor TranscriptionFactor NA TranscriptionFactor NA -ZNF710--SLCO3A1 BS_AZN38B7V 0.210353649967459 -3.03291984749802 NA NA no change differentially expressed NA NA 15:90001614 15:92005537 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr15:1.77Mb]],inversion/3'-3' ZNF710 NA SLCO3A1 NA TranscriptionFactor NA NA NA NA -ZNF720--SKAP2 BS_6JHXXVR7 2.49476044112517 4.4042984266501 NA NA differentially expressed differentially expressed NA NA 16:31723353 7:26893973 ARRIBA frameshift 12 2 high [INTERCHROMOSOMAL[chr16--chr7]],translocation ZNF720 NA SKAP2 NA NA NA NA NA NA -ZNF720--SKAP2 BS_6JHXXVR7 2.49476044112517 4.4042984266501 NA NA differentially expressed differentially expressed NA NA 16:31713435 7:26893973 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr16--chr7]],translocation ZNF720 NA SKAP2 NA NA NA NA NA NA -ZNF720--SKAP2 BS_6JHXXVR7 2.49476044112517 4.4042984266501 NA NA differentially expressed differentially expressed NA NA 16:31723353 7:26854890 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr16--chr7]],translocation ZNF720 NA SKAP2 NA NA NA NA NA NA -ZNF727(779)/TRIM60P17(6232)--ZNF727 BS_MKM0EEN1 11.8388928439481 11.8388928439481 1.44492030313702 NA differentially expressed differentially expressed no change NA 7:64079328 7:64068891 ARRIBA other 7 0 medium [],duplication ZNF727 TRIM60P17 ZNF727 NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF730--ATF7IP BS_MN5XVP5A 6.75552396883313 5.93401983321037 NA NA differentially expressed differentially expressed NA NA 19:23136043 12:14423909 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr19--chr12]],translocation ZNF730 NA ATF7IP NA TranscriptionFactor Oncogene NA NA NA -ZNF781--ZNF607 BS_AGTPCRR4 -1.96264686023216 1.0031829672218 NA NA no change no change NA NA 19:37691521 19:37711692 ARRIBA other 1 1 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:-:[4041]],duplication ZNF781 NA ZNF607 NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF81--AC091808.1(26663)/MIR3937(199729) BS_FCAKKZ20 6.6949250851119 NA NA NA differentially expressed NA NA NA X:47846321 X:39461487 ARRIBA frameshift 6 1 high [],duplication ZNF81 NA AC091808.1 MIR3937 TranscriptionFactor NA NA NA NA -ZNF827--LSM6 BS_WKESC3XN 2.69881300275546 -0.316898375172256 NA NA differentially expressed no change NA NA 4:145902166 4:146182912 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr4:0.24Mb]],inversion ZNF827 NA LSM6 NA TranscriptionFactor NA NA NA NA -ZNF84--AC100807.1(141495)/AC087354.1(190614) BS_TGS109T3 3.87077358572034 NA NA NA differentially expressed NA NA NA 12:133048848 8:139269448 ARRIBA frameshift 3 0 high [],translocation ZNF84 NA AC100807.1 AC087354.1 TranscriptionFactor NA NA NA NA -ZNF880--ANKRD24 BS_AZN38B7V 2.29399523984672 -1.5230548371722 NA NA differentially expressed no change NA NA 19:52374427 19:4186390 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr19:48.15Mb]],duplication ZNF880 NA ANKRD24 NA TranscriptionFactor NA NA NA NA -ZNF880--ANKRD24 BS_AZN38B7V 2.29399523984672 -1.5230548371722 NA NA differentially expressed no change NA NA 19:52374427 19:4186274 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr19:48.15Mb]],duplication ZNF880 NA ANKRD24 NA TranscriptionFactor NA NA NA NA -ZRANB3--ZRANB3 BS_39CGACC7 3.40481238465502 3.40481238465502 NA NA differentially expressed differentially expressed NA NA 2:135313489 2:135390820 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.39Mb]],duplication/non-canonical_splicing ZRANB3 NA ZRANB3 NA NA NA NA NA NA -ZSCAN1(581)/ZNF135(4027)--PIAS1 BS_AZN38B7V -2.10668788286061 3.32117179301895 4.03551302845647 NA differentially expressed differentially expressed differentially expressed NA 19:58055212 15:68086306 ARRIBA other 4 0 high [],translocation ZSCAN1 ZNF135 PIAS1 NA TranscriptionFactor TumorSuppressorGene TranscriptionFactor NA NA -ZSCAN9(649)/ZKSCAN4(10492)--ZSCAN9 BS_DV86M0Y7 0.734974694182944 0.734974694182944 2.15343158846182 NA no change no change differentially expressed NA 6:28234131 6:28227012 ARRIBA other 3 0 medium [],duplication ZSCAN9 ZKSCAN4 ZSCAN9 NA TranscriptionFactor TranscriptionFactor TranscriptionFactor NA NA -ZSCAN9(649)/ZKSCAN4(10492)--ZSCAN9 BS_N6NE6B3W 0.828608776990419 0.828608776990419 2.54531378349101 NA no change no change differentially expressed NA 6:28234131 6:28227012 ARRIBA other 5 1 high [],duplication ZSCAN9 ZKSCAN4 ZSCAN9 NA TranscriptionFactor TranscriptionFactor TranscriptionFactor NA NA -ZSWIM4--AHI1 BS_1D6PZNKN 7.36634127448078 -1.45727161878108 NA NA differentially expressed no change NA NA 19:13825713 6:135323324 ARRIBA in-frame 8 2 high [INTERCHROMOSOMAL[chr19--chr6]],translocation ZSWIM4 NA AHI1 NA NA Oncogene NA NA NA -ZZEF1--COX10-AS1 BS_23QW0BBA 1.83283929854977 5.63727519685022 NA NA no change differentially expressed NA NA 17:4142542 17:13777349 ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr17:9.61Mb]],duplication ZZEF1 NA COX10-AS1 NA NA NA NA NA NA -ZZEF1--COX10-AS1 BS_23QW0BBA 1.83283929854977 5.63727519685022 NA NA no change differentially expressed NA NA 17:4142542 17:13756729 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:9.61Mb]],duplication ZZEF1 NA COX10-AS1 NA NA NA NA NA NA -ZZEF1--USP6 BS_M0QYNVK8 2.21125162415515 2.05135457209005 NA NA differentially expressed differentially expressed NA NA 17:4142542 17:5172805 ARRIBA in-frame 7 0 high [INTRACHROMOSOMAL[chr17:0.97Mb]],inversion ZZEF1 NA USP6 NA NA CosmicCensus, Oncogene NA NA NA -AAK1--AC007402.1 BS_KBEX4RT2 0.458772777296013 NA NA NA no change NA NA NA 2:69495985 2:52314234 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr2:17.05Mb]],deletion/5'-5' AAK1 NA AC007402.1 NA Kinase, Kinase NA NA NA NA -AAK1--AC007402.1(11023)/AC139712.2(55133) BS_KBEX4RT2 0.458772777296013 NA NA NA no change NA NA NA 2:69495985 2:52418940 ARRIBA frameshift 1 1 medium [],deletion AAK1 NA AC007402.1 AC139712.2 Kinase, Kinase NA NA NA NA -ABCA7--ZNF43 BS_PXCPK5XS -1.63400157710299 5.16612408920312 NA NA no change differentially expressed NA NA 19:1043841 19:21809807 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr19:20.74Mb]],inversion ABCA7 NA ZNF43 NA NA TranscriptionFactor NA NA NA -ABCB1--LINC01392(247424)/AC073901.1(24588) BS_68KX6A42 0.305712320673931 5.67783752994618 NA NA no change differentially expressed NA NA 7:87541357 7:115478779 ARRIBA frameshift 18 6 high [],duplication ABCB1 NA LINC01392 AC073901.1 Oncogene NA NA NA NA -ABCC1--WWOX BS_F0JB4EAK 0.460805858624994 2.37968510381672 NA NA no change differentially expressed NA NA 16:16125911 16:79211608 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr16:61.96Mb]],deletion ABCC1 NA WWOX NA Oncogene TumorSuppressorGene, Oncogene NA NA NA -ABHD2--SGMS1 BS_4PPHAQXF 3.32954875994557 0.145347166065839 NA NA differentially expressed no change NA NA 15:89116521 10:50327322 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr15--chr10]],translocation ABHD2 NA SGMS1 NA Oncogene TumorSuppressorGene, Oncogene NA NA NA -ABL2--ACBD6 BS_X0XXN9BK 1.73023327255976 1.86915542177134 NA NA no change no change NA NA 1:179229241 1:180314722 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:1.04Mb]],duplication ABL2 NA ACBD6 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -ABLIM1--CRTAC1 BS_QKT3TJVK 0.0298175718547373 3.41033025966291 NA NA no change differentially expressed NA NA 10:114487958 10:97900248 ARRIBA frameshift 47 18 high [INTRACHROMOSOMAL[chr10:16.40Mb]],inversion/5'-5' ABLIM1 NA CRTAC1 NA NA NA NA NA NA -ABR--PITPNA BS_HWGWYCY7 0.704514667716855 1.20013431226103 NA NA no change no change NA NA 17:1031598 17:1558559 ARRIBA frameshift 3 1 medium [ChimerSeq,INTRACHROMOSOMAL[chr17:0.29Mb]],duplication ABR NA PITPNA NA Oncogene NA NA NA TCGAFusion -ABR--YWHAE BS_ZF6BSFNF 0.426186089042468 1.15763646966891 NA NA no change no change NA NA 17:1179667 17:1365058 ARRIBA in-frame 2 0 low [Klijn_CellLines,FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr17:0.12Mb]],duplication ABR NA YWHAE NA Oncogene CosmicCensus, Oncogene NA NA TCGAFusion -AC004852.2--NXPH1 BS_S6Q7NKA3 NA -1.77942068265093 NA NA NA no change NA NA 7:9189560 7:8612991 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr7:0.33Mb]],deletion/5'-5' AC004852.2 NA NXPH1 NA NA NA NA NA NA -AC004980.1--CCDC146 BS_JB43XBCQ NA 2.20910216371606 NA NA NA differentially expressed NA NA 7:76549861 7:77241691 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:0.49Mb]],deletion AC004980.1 NA CCDC146 NA NA NA NA NA NA -AC004980.1--CCDC146 BS_JB43XBCQ NA 2.20910216371606 NA NA NA differentially expressed NA NA 7:76549861 7:77236947 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.49Mb]],deletion AC004980.1 NA CCDC146 NA NA NA NA NA NA -AC004980.1--CCDC146 BS_JB43XBCQ NA 2.20910216371606 NA NA NA differentially expressed NA NA 7:76549861 7:77167658 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.49Mb]],deletion AC004980.1 NA CCDC146 NA NA NA NA NA NA -AC004980.1--SLC26A4 BS_68KX6A42 NA 3.49514897344647 NA NA NA differentially expressed NA NA 7:76551522 7:107673278 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:31.03Mb]],inversion/3'-3' AC004980.1 NA SLC26A4 NA NA NA NA NA NA -AC005165.1--MDH2 BS_68KX6A42 NA 1.62764616036815 NA NA NA no change NA NA 7:25595149 7:76060226 ARRIBA other 15 2 medium [INTRACHROMOSOMAL[chr7:50.30Mb]],deletion/3'-3' AC005165.1 NA MDH2 NA NA NA NA NA NA -AC005524.1--PARD3 BS_XGDPK33A NA 1.39121407459937 NA NA NA no change NA NA 19:28721954 10:34401917 ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr19--chr10]],translocation AC005524.1 NA PARD3 NA NA NA NA NA NA -AC005833.3--GIPR BS_QKT3TJVK NA 1.03940276369606 NA NA NA no change NA NA 12:4669817 19:45678318 ARRIBA other 17 2 medium [INTERCHROMOSOMAL[chr12--chr19]],translocation/5'-5' AC005833.3 NA GIPR NA NA NA NA NA NA -AC005833.3--TMTC1 BS_ZD5HN296 NA 1.03070250093823 NA NA NA no change NA NA 12:4669817 12:29512120 ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr12:24.76Mb]],inversion AC005833.3 NA TMTC1 NA NA NA NA NA NA -AC008554.1--AP001001.1(5416)/AP001001.2(5068) BS_8ZY4GST0 NA NA NA NA NA NA NA NA 19:20497214 11:106107391 ARRIBA other 10 6 high [],translocation AC008554.1 NA AP001001.1 AP001001.2 NA NA NA NA NA -AC008758.1--PRKACA BS_W1385R8Y NA 0.0734950776996731 NA NA NA no change NA NA 19:12551330 19:14102914 ARRIBA in-frame 7 0 high [INTRACHROMOSOMAL[chr19:1.54Mb]],duplication AC008758.1 NA PRKACA NA NA CosmicCensus, Kinase NA NA NA -AC008764.4--C1orf61 BS_PXCPK5XS NA -0.228749275857458 NA NA NA no change NA NA 19:16647120 1:156404601 ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr19--chr1]],translocation AC008764.4 NA C1orf61 NA NA NA NA NA NA -AC008764.8--GRIN3B BS_PXCPK5XS NA -0.609571678879422 NA NA NA no change NA NA 19:16574221 19:1007287 ARRIBA other 17 1 medium [INTRACHROMOSOMAL[chr19:15.56Mb]],inversion/3'-3' AC008764.8 NA GRIN3B NA NA NA NA NA NA -AC009041.2--RBFOX1 BS_XZM79E42 NA -2.03872588780421 NA NA NA differentially expressed NA NA 16:981145 16:5691792 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr16:4.26Mb]],inversion AC009041.2 NA RBFOX1 NA NA NA NA NA NA -AC009093.3--ANK2 BS_1N7MQZGR NA 1.43773187613103 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_21ET39G7 NA 0.861812769653678 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_4PWDGEB0 NA 0.673494156313071 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_5VPM0F36 NA -0.138372741818146 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_68KX6A42 NA 0.402834130070513 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_6M2053M0 NA 0.0383185714900435 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_7WM3MNZ0 NA -0.605640624530479 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_8ZY4GST0 NA 0.393810842738193 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_EZ3147MX NA -0.286955977995412 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_FCDAH728 NA -0.234939596768779 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_G3NN392N NA -1.95715779994612 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_JB43XBCQ NA -0.51671406852721 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_KBEX4RT2 NA 0.00331941500380556 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NB9XXBW6 NA 0.428134515100548 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NEVYM2FP NA 0.536251625381146 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_NGSG2KB6 NA -0.19527029259906 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_R9B92M75 NA 0.266344951253776 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_S6Q7NKA3 NA -3.06704464579165 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_W7MFJZ5A NA 0.451596294987602 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_XGDPK33A NA 0.393559487860661 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_YDEVMD24 NA 0.146669560154366 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_Z3RCA1T9 NA -0.485962261504492 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.3--ANK2 BS_ZD5HN296 NA 0.924151931709359 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA -AC009093.8--LINC02182(28895)/AC138512.1(10673) BS_0ZA67BBC NA NA NA NA NA NA NA NA 16:29116326 16:88224112 ARRIBA other 2 0 medium [],deletion AC009093.8 NA LINC02182 AC138512.1 NA NA NA NA NA -AC009093.9--ANK2 BS_1N7MQZGR NA 1.43773187613103 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_21ET39G7 NA 0.861812769653678 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_4PWDGEB0 NA 0.673494156313071 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_5VPM0F36 NA -0.138372741818146 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_68KX6A42 NA 0.402834130070513 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_6M2053M0 NA 0.0383185714900435 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_7WM3MNZ0 NA -0.605640624530479 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_8ZY4GST0 NA 0.393810842738193 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_EZ3147MX NA -0.286955977995412 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_FCDAH728 NA -0.234939596768779 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_G3NN392N NA -1.95715779994612 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_JB43XBCQ NA -0.51671406852721 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_KBEX4RT2 NA 0.00331941500380556 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NB9XXBW6 NA 0.428134515100548 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NEVYM2FP NA 0.536251625381146 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_NGSG2KB6 NA -0.19527029259906 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_R9B92M75 NA 0.266344951253776 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_S6Q7NKA3 NA -3.06704464579165 NA NA NA differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_W7MFJZ5A NA 0.451596294987602 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_XGDPK33A NA 0.393559487860661 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_YDEVMD24 NA 0.146669560154366 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_Z3RCA1T9 NA -0.485962261504492 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC009093.9--ANK2 BS_ZD5HN296 NA 0.924151931709359 NA NA NA no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA -AC011474.1--AC011474.1 BS_ZF6BSFNF NA NA NA NA NA NA NA NA 19:29391421 19:29393075 ARRIBA other 2 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA -AC012617.1--AL008721.2 BS_RX1YTZ7F NA NA NA NA NA NA NA NA 19:36310955 22:25478310 ARRIBA other 26 1 medium [INTERCHROMOSOMAL[chr19--chr22]],translocation/5'-5' AC012617.1 NA AL008721.2 NA NA NA NA NA NA -AC013394.1--TBC1D2B BS_68KX6A42 NA 2.16229705324577 NA NA NA differentially expressed NA NA 15:92924552 15:78054187 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr15:14.81Mb]],inversion AC013394.1 NA TBC1D2B NA NA NA NA NA NA -AC015936.1(9123)/C1QL1(1631)--LYRM4 BS_QNNX91SM NA 2.39267949156261 4.22161712895658 NA NA differentially expressed differentially expressed NA 17:44958062 6:5216738 ARRIBA other 2 0 medium [],translocation AC015936.1 C1QL1 LYRM4 NA NA NA NA NA NA -AC026412.1--AF130417.1 BS_W4H1D4Y6 NA NA NA NA NA NA NA NA 5:1632644 21:18024750 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr5--chr21]],translocation AC026412.1 NA AF130417.1 NA NA NA NA NA NA -AC026412.1--CHODL BS_W4H1D4Y6 NA -0.159529046279509 NA NA NA no change NA NA 5:1632845 21:17997566 ARRIBA other 2 1 high [INTERCHROMOSOMAL[chr5--chr21]],translocation/5'-5' AC026412.1 NA CHODL NA NA NA NA NA NA -AC046136.1--GAP43 BS_21ET39G7 NA -0.214272927599271 NA NA NA no change NA NA 3:115262930 3:115676013 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA -AC046136.1--GAP43 BS_49CJNZ06 NA 2.3376556387961 NA NA NA differentially expressed NA NA 3:115262930 3:115676013 ARRIBA other 3 2 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA -AC046136.1--GAP43 BS_68KX6A42 NA 0.830877001017201 NA NA NA no change NA NA 3:115262930 3:115676013 ARRIBA other 2 1 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA -AC046136.1--GAP43 BS_JQVAWTTM NA -0.790813389364509 NA NA NA no change NA NA 3:115262930 3:115676013 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA -AC046136.1--GAP43 BS_NGSG2KB6 NA -0.842168495216075 NA NA NA no change NA NA 3:115262930 3:115676013 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA -AC046136.1--GAP43 BS_R9B92M75 NA -0.118106087073839 NA NA NA no change NA NA 3:115262930 3:115676013 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA -AC046136.1--GAP43 BS_S6Q7NKA3 NA 0.21521171698103 NA NA NA no change NA NA 3:115262930 3:115676013 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA -AC046136.1--GAP43 BS_W7MFJZ5A NA 1.80005986945607 NA NA NA no change NA NA 3:115262930 3:115676013 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA -AC046136.1--GAP43 BS_XGDPK33A NA -0.434852104510181 NA NA NA no change NA NA 3:115262930 3:115676013 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA -AC063965.1--LIPA BS_W1385R8Y NA -0.612662117450323 NA NA NA no change NA NA 10:87880438 10:89222582 ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr10:1.33Mb]],inversion AC063965.1 NA LIPA NA NA NA NA NA NA -AC073114.1(115437)/AC092167.1(100422)--TMEM140 BS_S6Q7NKA3 NA 1.53085257173498 NA NA NA no change NA NA 7:110331817 7:135165596 ARRIBA other 29 7 medium [],deletion AC073114.1 AC092167.1 TMEM140 NA NA NA NA NA NA -AC073521.1(128647)/HPVC1(124833)--IMMP2L BS_68KX6A42 NA 3.01004673687625 1.56373782457804 NA NA differentially expressed no change NA 7:54076391 7:111413945 ARRIBA other 3 1 medium [],inversion AC073521.1 HPVC1 IMMP2L NA NA NA NA NA NA -AC084337.2--LMO2(87951)/CAPRIN1(71443) BS_ZD5HN296 NA 2.33173763996533 NA 1.67151300021531 NA differentially expressed NA no change 11:6481852 11:33980240 ARRIBA frameshift 3 1 high [],inversion AC084337.2 NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA -AC084816.1--TYROBP BS_W4H1D4Y6 NA 1.1009205038552 NA NA NA no change NA NA 12:22700094 19:35908307 ARRIBA other 46 33 high [INTERCHROMOSOMAL[chr12--chr19]],translocation AC084816.1 NA TYROBP NA NA NA NA NA NA -AC084816.1--TYROBP(12758)/LRFN3(14305) BS_W4H1D4Y6 NA 1.1009205038552 NA 3.01655152427692 NA no change NA differentially expressed 12:22700094 19:35921053 ARRIBA other 29 0 medium [],translocation AC084816.1 NA TYROBP LRFN3 NA NA NA NA NA -AC090114.3--AMPH BS_68KX6A42 NA -0.423165655047774 NA NA NA no change NA NA 7:128533730 7:38436388 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr7:89.90Mb]],inversion AC090114.3 NA AMPH NA NA NA NA NA NA -AC090692.1--LDLRAD3 BS_0VXZCRJS NA 4.12682230141381 NA NA NA differentially expressed NA NA 11:35918011 11:36227085 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.03Mb],LOCAL_INVERSION:-:+:[25242]],inversion AC090692.1 NA LDLRAD3 NA NA NA NA NA NA -AC090692.1--LDLRAD3 BS_SNVM7CZT NA 4.57046012929996 NA NA NA differentially expressed NA NA 11:35918011 11:36227085 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr11:0.03Mb],LOCAL_INVERSION:-:+:[25242]],inversion AC090692.1 NA LDLRAD3 NA NA NA NA NA NA -AC091078.1--AC116903.2(32539)/ST8SIA2(30252) BS_68KX6A42 NA NA NA 8.1447513455215 NA NA NA differentially expressed 15:93373585 15:92363576 ARRIBA other 6 5 high [],duplication AC091078.1 NA AC116903.2 ST8SIA2 NA NA NA NA NA -AC091078.1--CHD2 BS_68KX6A42 NA 1.72111281956675 NA NA NA no change NA NA 15:93322346 15:92997253 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.28Mb]],duplication AC091078.1 NA CHD2 NA NA CosmicCensus, Oncogene NA NA NA -AC091078.1--MIR9-3HG(47307)/RHCG(25604) BS_68KX6A42 NA NA NA -2.0224575000405 NA NA NA differentially expressed 15:93498757 15:89445794 ARRIBA other 17 0 medium [],inversion AC091078.1 NA MIR9-3HG RHCG NA NA NA Oncogene NA -AC091912.1(86249)/LINC02226(89444)--MARCH6 BS_68KX6A42 NA -0.800468274304093 NA NA NA no change NA NA 5:8244037 5:10377798 ARRIBA other 2 1 high [],deletion AC091912.1 LINC02226 MARCH6 NA NA NA NA NA NA -AC092666.2--AC092681.1 BS_4PPHAQXF NA NA NA NA NA NA NA NA 7:150047609 7:149891301 STARFUSION other 20 2 NA [INTRACHROMOSOMAL[chr7:0.14Mb]] AC092666.2 NA AC092681.1 NA NA NA NA NA NA -AC092666.2--AC092681.1 BS_BYCX6VK1 NA NA NA NA NA NA NA NA 7:150047609 7:149891301 STARFUSION other 14 2 NA [INTRACHROMOSOMAL[chr7:0.14Mb]] AC092666.2 NA AC092681.1 NA NA NA NA NA NA -AC092691.1--DUX4L2(26082)/DUX4(55413) BS_0VXZCRJS NA NA NA -0.595069764557869 NA NA NA no change 3:117997182 4:190118361 ARRIBA other 2 2 high [],translocation AC092691.1 NA DUX4L2 DUX4 NA NA NA Oncogene, TranscriptionFactor NA -AC095350.2--ATP6V0A2 BS_BMMY0H73 NA 4.42106186687156 NA NA NA differentially expressed NA NA 12:130628322 12:123735531 STARFUSION other 106 54 NA [INTRACHROMOSOMAL[chr12:6.87Mb]] AC095350.2 NA ATP6V0A2 NA NA NA NA NA NA -AC095350.2--ATP6V0A2 BS_BMMY0H73 NA 4.42106186687156 NA NA NA differentially expressed NA NA 12:130628322 12:123735531 ARRIBA other 104 51 high [INTRACHROMOSOMAL[chr12:6.87Mb]],inversion AC095350.2 NA ATP6V0A2 NA NA NA NA NA NA -AC099669.1--DRG2 BS_R7NTZR4C NA 2.75769531498159 NA NA NA differentially expressed NA NA 3:44579762 17:18098268 ARRIBA other 5 1 high [INTERCHROMOSOMAL[chr3--chr17]],translocation AC099669.1 NA DRG2 NA NA NA NA NA NA -AC103718.1--AC103718.1(23503)/MTRF1LP2(21562) BS_Z3RCA1T9 NA NA NA -0.0416847786721587 NA NA NA no change 8:129679928 8:129707182 ARRIBA other 30 11 high [],duplication AC103718.1 NA AC103718.1 MTRF1LP2 NA NA NA NA NA -AC103718.1--GSDMC BS_FCDAH728 NA 4.11788067604379 NA NA NA differentially expressed NA NA 8:129679928 8:129760589 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr8:0.06Mb],LOCAL_REARRANGEMENT:-:[64517]],duplication AC103718.1 NA GSDMC NA NA NA NA NA NA -AC103718.1--LINC00976(136388)/LINC00977(114078) BS_XGDPK33A NA 2.82041455744271 NA 21.6144233257713 NA differentially expressed NA differentially expressed 8:129679928 8:129102389 ARRIBA other 3 3 high [],deletion AC103718.1 NA LINC00976 LINC00977 NA NA NA NA NA -AC103718.1--LINC00976(136388)/LINC00977(114078) BS_Z3RCA1T9 NA -0.157777393761257 NA 8.32358765202241 NA no change NA differentially expressed 8:129679928 8:129102389 ARRIBA other 3 0 high [],deletion AC103718.1 NA LINC00976 LINC00977 NA NA NA NA NA -AC103718.1--LINC00977 BS_XGDPK33A NA 21.6144233257713 NA NA NA differentially expressed NA NA 8:129679928 8:129223369 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr8:0.44Mb]],deletion AC103718.1 NA LINC00977 NA NA NA NA NA NA -AC103718.1--PVT1 BS_FCDAH728 NA 2.04024719778833 NA NA NA differentially expressed NA NA 8:129679928 8:128096518 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr8:1.58Mb]],inversion AC103718.1 NA PVT1 NA NA Oncogene NA NA NA -AC104692.1--PSPHP1 BS_4PPHAQXF NA 3.85691010531751 NA NA NA differentially expressed NA NA 7:152367261 7:55773178 STARFUSION other 47 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA -AC104692.1--PSPHP1 BS_685DACMS NA 3.03503988703785 NA NA NA differentially expressed NA NA 7:152367261 7:55773178 STARFUSION other 25 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA -AC104692.1--PSPHP1 BS_S6Q7NKA3 NA 4.49067814873742 NA NA NA differentially expressed NA NA 7:152367263 7:55773180 STARFUSION other 16 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA -AC104692.1--PSPHP1 BS_W4H1D4Y6 NA 3.59833476337816 NA NA NA differentially expressed NA NA 7:152367261 7:55773178 STARFUSION other 71 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA -AC106729.1--MON1B BS_NEVYM2FP NA 2.3167162635163 NA NA NA differentially expressed NA NA 16:76736479 16:77191476 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr16:0.26Mb]],deletion AC106729.1 NA MON1B NA NA NA NA NA NA -AC106886.5--SRRM2 BS_W1385R8Y NA 0.291078897584339 NA NA NA no change NA NA 16:30716479 16:2770352 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr16:27.93Mb]],duplication AC106886.5 NA SRRM2 NA NA NA NA NA NA -AC107419.1--FBXO3 BS_PXCPK5XS NA 1.36973382360376 NA NA NA no change NA NA X:27398751 11:33742084 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chrX--chr11]],translocation AC107419.1 NA FBXO3 NA NA NA NA NA NA -AC107419.1--FBXO3 BS_PXCPK5XS NA 1.36973382360376 NA NA NA no change NA NA X:27336410 11:33742084 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chrX--chr11]],translocation AC107419.1 NA FBXO3 NA NA NA NA NA NA -AC107871.1--DAP BS_68KX6A42 NA 1.3499716009603 NA NA NA no change NA NA 15:68218536 5:10683571 ARRIBA frameshift 6 3 high [INTERCHROMOSOMAL[chr15--chr5]],translocation AC107871.1 NA DAP NA NA NA NA NA NA -AC107871.1--DAP BS_68KX6A42 NA 1.3499716009603 NA NA NA no change NA NA 15:68218536 5:10748271 ARRIBA frameshift 1 3 high [INTERCHROMOSOMAL[chr15--chr5]],translocation AC107871.1 NA DAP NA NA NA NA NA NA -AC116366.3--NOM1 BS_Z3RCA1T9 NA 1.54582668241159 NA NA NA no change NA NA 5:132579502 7:156963905 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr5--chr7]],translocation AC116366.3 NA NOM1 NA NA NA NA NA NA -AC136443.2--AC138932.1 BS_R7NTZR4C NA NA NA NA NA NA NA NA 16:14766444 16:14932793 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC136443.2 NA AC138932.1 NA NA NA NA NA NA -AC136443.2--NPIPA1 BS_R7NTZR4C NA -0.752158498677676 NA NA NA no change NA NA 16:14766444 16:14932793 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' AC136443.2 NA NPIPA1 NA NA NA NA NA NA -AC138866.1--AC091946.1 BS_W4H1D4Y6 NA NA NA NA NA NA NA NA 5:70221931 5:21731601 ARRIBA other 29 0 medium [INTRACHROMOSOMAL[chr5:48.44Mb]],deletion/5'-5' AC138866.1 NA AC091946.1 NA NA NA NA NA NA -AC241585.1--LHFPL3 BS_68KX6A42 NA 4.02682538331291 NA NA NA differentially expressed NA NA 1:145233113 7:104530204 ARRIBA other 10 0 low [INTERCHROMOSOMAL[chr1--chr7]],translocation AC241585.1 NA LHFPL3 NA NA NA NA NA NA -AC241585.2--PDE4DIP BS_W4H1D4Y6 -1.65062064757816 -0.653775344554805 NA NA no change no change NA NA 1:145214677 1:148879699 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:3.59Mb]],duplication/5'-5' AC241585.2 NA PDE4DIP NA NA CosmicCensus, Oncogene NA NA NA -ACACB--NF1 BS_T3DGY9J9 -0.648405220463997 -0.542347495671915 NA NA no change no change NA NA 12:109245388 17:31258094 ARRIBA other 1 3 medium [INTERCHROMOSOMAL[chr12--chr17]],translocation ACACB NA NF1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -ACBD6--XPR1 BS_RX1YTZ7F 1.44374968353668 4.7118124626429 NA NA no change differentially expressed NA NA 1:180314692 1:180682360 ARRIBA frameshift 1 0 low [ChimerSeq,INTRACHROMOSOMAL[chr1:0.13Mb]],inversion ACBD6 NA XPR1 NA NA NA NA NA NA -ACTR3B--SEMA3C BS_68KX6A42 -0.877950884701617 2.31305404178331 NA NA no change differentially expressed NA NA 7:152816588 7:80828745 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr7:71.84Mb]],inversion ACTR3B NA SEMA3C NA NA NA NA NA NA -ACTR3B--SEMA3C BS_68KX6A42 -0.877950884701617 2.31305404178331 NA NA no change differentially expressed NA NA 7:152816588 7:80905916 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:71.84Mb]],inversion ACTR3B NA SEMA3C NA NA NA NA NA NA -ACTR6--GNPTAB BS_1N7MQZGR 1.03705689425411 0.40660947075471 NA NA no change no change NA NA 12:100207786 12:101760143 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:1.50Mb]],inversion ACTR6 NA GNPTAB NA NA NA NA NA NA -ADAM23--AC017048.2 BS_BMMY0H73 1.16522082849634 127.2178610415 NA NA no change differentially expressed NA NA 2:206445524 2:176527753 STARFUSION other 10 8 NA [INTRACHROMOSOMAL[chr2:29.91Mb]] ADAM23 NA AC017048.2 NA Oncogene NA NA NA NA -ADAM23--AC017048.2 BS_BMMY0H73 1.16522082849634 127.2178610415 NA NA no change differentially expressed NA NA 2:206445524 2:176525359 STARFUSION other 5 8 NA [INTRACHROMOSOMAL[chr2:29.91Mb]] ADAM23 NA AC017048.2 NA Oncogene NA NA NA NA -ADAM23--AC017048.2 BS_BMMY0H73 1.16522082849634 127.2178610415 NA NA no change differentially expressed NA NA 2:206445524 2:176527753 ARRIBA frameshift 10 8 high [INTRACHROMOSOMAL[chr2:29.91Mb]],inversion ADAM23 NA AC017048.2 NA Oncogene NA NA NA NA -ADAM23--AC017048.2 BS_BMMY0H73 1.16522082849634 127.2178610415 NA NA no change differentially expressed NA NA 2:206445524 2:176525359 ARRIBA frameshift 5 5 high [INTRACHROMOSOMAL[chr2:29.91Mb]],inversion ADAM23 NA AC017048.2 NA Oncogene NA NA NA NA -ADAMTS17--LINC01376 BS_R7NTZR4C 14.6297356965046 2.16331521040239 NA NA differentially expressed differentially expressed NA NA 15:100330889 2:19125387 ARRIBA frameshift 5 1 high [INTERCHROMOSOMAL[chr15--chr2]],translocation ADAMTS17 NA LINC01376 NA NA NA NA NA NA -ADAMTS17--TTC23 BS_R7NTZR4C 14.6297356965046 13.3792172996008 NA NA differentially expressed differentially expressed NA NA 15:100254136 15:99161867 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr15:0.72Mb]],deletion ADAMTS17 NA TTC23 NA NA NA NA NA NA -ADARB2--MAPK1 BS_GWSJ4Z9H 1.22790438169205 3.64296751900669 NA NA no change differentially expressed NA NA 10:1737051 22:21807846 STARFUSION frameshift 19 1 NA [INTERCHROMOSOMAL[chr10--chr22]] ADARB2 NA MAPK1 NA Oncogene CosmicCensus, Oncogene, Kinase NA NA NA -ADARB2--MAPK1 BS_GWSJ4Z9H 1.22790438169205 3.64296751900669 NA NA no change differentially expressed NA NA 10:1737051 22:21807846 ARRIBA frameshift 18 1 high [INTERCHROMOSOMAL[chr10--chr22]],translocation ADARB2 NA MAPK1 NA Oncogene CosmicCensus, Oncogene, Kinase NA NA NA -ADCK2--LINC01003(72096)/AC104843.2(52996) BS_68KX6A42 2.33785725077247 2.65034155191863 NA NA differentially expressed differentially expressed NA NA 7:140681137 7:152537645 ARRIBA frameshift 2 3 medium [],deletion ADCK2 NA LINC01003 AC104843.2 Kinase NA NA NA NA -ADCY2--LINC02123 BS_HWGWYCY7 -1.88368219546174 NA NA NA no change NA NA NA 5:7396506 5:7347768 ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr5:0.05Mb],LOCAL_INVERSION:+:-:[48231]],inversion ADCY2 NA LINC02123 NA NA NA NA NA NA -ADGRB3--AL646090.1(52730)/LINC02549(113740) BS_58YXHGAJ -0.102475222702573 NA NA NA no change NA NA NA 6:68639432 6:68113232 ARRIBA frameshift 4 0 high [],inversion ADGRB3 NA AL646090.1 LINC02549 NA NA NA NA NA -ADGRB3--AL646090.1(74920)/LINC02549(91550) BS_58YXHGAJ -0.102475222702573 NA NA NA no change NA NA NA 6:68639432 6:68135422 ARRIBA frameshift 4 1 high [],inversion ADGRB3 NA AL646090.1 LINC02549 NA NA NA NA NA -ADGRB3--HLA-DOA(29359)/HLA-DPA1(25598) BS_58YXHGAJ -0.102475222702573 1.24449312386508 NA 1.05122532542569 no change no change NA no change 6:69076038 6:33038971 ARRIBA frameshift 4 0 high [],duplication ADGRB3 NA HLA-DOA HLA-DPA1 NA NA NA NA NA -ADGRB3--HLA-DPB1 BS_58YXHGAJ -0.102475222702573 1.35588100804622 NA NA no change no change NA NA 6:69076038 6:33076038 ARRIBA in-frame 1 2 high [INTRACHROMOSOMAL[chr6:35.55Mb]],duplication ADGRB3 NA HLA-DPB1 NA NA NA NA NA NA -ADGRB3--LMBRD1 BS_ZF6BSFNF -1.27091630695049 -0.330255626394074 NA NA no change no change NA NA 6:69239226 6:69713797 ARRIBA in-frame 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr6:0.29Mb]],inversion ADGRB3 NA LMBRD1 NA NA NA NA NA NA -ADGRB3--LMBRD1 BS_ZF6BSFNF -1.27091630695049 -0.330255626394074 NA NA no change no change NA NA 6:69239226 6:69676541 ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr6:0.29Mb]],inversion ADGRB3 NA LMBRD1 NA NA NA NA NA NA -ADGRL3--APBB2 BS_RX1YTZ7F 3.0966907280432 1.36570531775397 NA NA differentially expressed no change NA NA 4:61201765 4:41143142 STARFUSION other 13 4 NA [INTRACHROMOSOMAL[chr4:19.98Mb]] ADGRL3 NA APBB2 NA NA NA NA NA NA -ADGRL3--APBB2 BS_RX1YTZ7F 3.0966907280432 1.36570531775397 NA NA differentially expressed no change NA NA 4:61201765 4:41143142 ARRIBA other 12 4 high [INTRACHROMOSOMAL[chr4:19.98Mb]],inversion ADGRL3 NA APBB2 NA NA NA NA NA NA -ADGRL3--APBB2 BS_RX1YTZ7F 3.0966907280432 1.36570531775397 NA NA differentially expressed no change NA NA 4:61202231 4:41143142 ARRIBA other 1 4 high [INTRACHROMOSOMAL[chr4:19.98Mb]],inversion ADGRL3 NA APBB2 NA NA NA NA NA NA -ADGRL3--APBB2 BS_RX1YTZ7F 3.0966907280432 1.36570531775397 NA NA differentially expressed no change NA NA 4:61201765 4:41100750 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr4:19.98Mb]],inversion ADGRL3 NA APBB2 NA NA NA NA NA NA -ADK--LRMDA BS_T3DGY9J9 1.546611517252 NA NA NA no change NA NA NA 10:74398579 10:76557209 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:0.72Mb]],deletion ADK NA LRMDA NA NA NA NA NA NA -AFDN--SMTN BS_JGA9BP3A NA 1.40194227388443 NA NA NA no change NA NA 6:167827237 22:31095303 STARFUSION in-frame 157 35 NA [INTERCHROMOSOMAL[chr6--chr22]] AFDN NA SMTN NA CosmicCensus, Oncogene NA NA NA NA -AFDN--SMTN BS_JGA9BP3A NA 1.40194227388443 NA NA NA no change NA NA 6:167827237 22:31095303 ARRIBA in-frame 149 25 high [INTERCHROMOSOMAL[chr6--chr22]],translocation AFDN NA SMTN NA CosmicCensus, Oncogene NA NA NA NA -AGAP1--SH3BP4 BS_KBEX4RT2 4.03176313071257 4.35474172305952 NA NA differentially expressed differentially expressed NA NA 2:235807331 2:235034871 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr2:0.44Mb]],duplication AGAP1 NA SH3BP4 NA NA NA NA NA NA -AGAP3--NYAP1 BS_68KX6A42 -1.68987005075053 -1.03696412961714 NA NA no change no change NA NA 7:151087072 7:100485228 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:50.59Mb]],duplication AGAP3 NA NYAP1 NA NA NA NA NA NA -AGAP3--TMEM178B BS_68KX6A42 -1.68987005075053 0.665209793968493 NA NA no change no change NA NA 7:151087072 7:141404576 ARRIBA frameshift 8 1 high [INTRACHROMOSOMAL[chr7:9.61Mb]],inversion/3'-3' AGAP3 NA TMEM178B NA NA NA NA NA NA -AGFG1--TRIP12 BS_X4DD4KSZ 2.2384373107735 2.87551448016286 NA NA differentially expressed differentially expressed NA NA 2:227491640 2:229818512 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:2.20Mb]],inversion AGFG1 NA TRIP12 NA NA NA NA NA NA -AGK--MGC4859(59866)/Y_RNA(62168) BS_68KX6A42 0.909416343914078 NA NA -0.162236315085263 no change NA NA no change 7:141598462 7:10839810 ARRIBA other 72 30 high [],inversion AGK NA MGC4859 Y_RNA NA NA NA NA NA -AGK--RADIL BS_68KX6A42 0.909416343914078 0.41965401145193 NA NA no change no change NA NA 7:141601280 7:4822554 ARRIBA frameshift 13 2 high [INTRACHROMOSOMAL[chr7:136.67Mb]],inversion AGK NA RADIL NA NA NA NA NA NA -AGO1--NKAIN1 BS_W4H1D4Y6 -0.394168933922019 -1.05458155762738 NA NA no change no change NA NA 1:35869904 1:31188186 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr1:4.63Mb]],inversion AGO1 NA NKAIN1 NA NA NA NA NA NA -AGPAT4--ADGRB3 BS_58YXHGAJ -0.232475107764389 -0.102475222702573 NA NA no change no change NA NA 6:161273938 6:69233290 STARFUSION other 4 3 NA [INTRACHROMOSOMAL[chr6:91.74Mb]] AGPAT4 NA ADGRB3 NA NA NA NA NA NA -AGPAT4--ADGRB3 BS_58YXHGAJ -0.232475107764389 -0.102475222702573 NA NA no change no change NA NA 6:161273938 6:69233290 ARRIBA other 4 3 high [INTRACHROMOSOMAL[chr6:91.74Mb]],inversion AGPAT4 NA ADGRB3 NA NA NA NA NA NA -AHCYL2--DGKB BS_68KX6A42 0.106047098190238 -0.559376118430487 NA NA no change no change NA NA 7:129368551 7:14308884 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr7:114.25Mb]],duplication/5'-5' AHCYL2 NA DGKB NA NA Kinase NA NA NA -AHCYL2--PRPF4 BS_NPA6CZQF 0.789323328556114 0.87180565577995 NA NA no change no change NA NA 7:129410521 9:113275467 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr7--chr9]],translocation AHCYL2 NA PRPF4 NA NA NA NA NA NA -AHRR--AP000949.1(18486)/AP001116.1(163005) BS_W4H1D4Y6 1.87462107768275 NA NA NA no change NA NA NA 5:428006 21:22902486 ARRIBA frameshift 2 0 medium [],translocation AHRR NA AP000949.1 AP001116.1 TumorSuppressorGene, TranscriptionFactor NA NA NA NA -AIG1--FUCA2 BS_58YXHGAJ -0.959094470828327 0.318251774039676 NA NA no change no change NA NA 6:143061066 6:143507424 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr6:0.15Mb]],inversion AIG1 NA FUCA2 NA NA NA NA NA NA -AK2--TAF12 BS_W4H1D4Y6 1.55861411840652 -0.79049572487136 NA NA no change no change NA NA 1:33036736 1:28622165 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:4.36Mb]],deletion AK2 NA TAF12 NA NA NA NA NA NA -AKAP13--SH3GL3 BS_GWSJ4Z9H 3.05966574469108 -0.464296189735124 NA NA differentially expressed no change NA NA 15:85380798 15:83559253 ARRIBA other 9 1 high [INTRACHROMOSOMAL[chr15:1.76Mb]],duplication AKAP13 NA SH3GL3 NA Oncogene NA NA NA NA -AKAP13--THADA BS_S6Q7NKA3 2.02402216077587 2.78943937854425 NA NA differentially expressed differentially expressed NA NA 15:85585823 2:43578607 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr15--chr2]],translocation AKAP13 NA THADA NA Oncogene Oncogene NA NA NA -AKAP6--AKAP6 BS_W4H1D4Y6 3.47740974885175 3.47740974885175 NA NA differentially expressed differentially expressed NA NA 14:32535805 14:32433460 ARRIBA frameshift 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.51Mb]],duplication/non-canonical_splicing AKAP6 NA AKAP6 NA NA NA NA NA NA -AKAP6--NUBPL BS_KBEX4RT2 2.36647948092492 2.24334099803454 NA NA differentially expressed differentially expressed NA NA 14:32329408 14:31787780 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.47Mb]],duplication AKAP6 NA NUBPL NA NA NA NA NA NA -AKAP6--NUBPL BS_NB9XXBW6 1.39177695662047 2.85929459061167 NA NA no change differentially expressed NA NA 14:32546999 14:31787780 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr14:0.47Mb]],duplication AKAP6 NA NUBPL NA NA NA NA NA NA -AKT1--EFS BS_F0JB4EAK -0.28461310836056 1.62952421073774 NA NA no change no change NA NA 14:104792598 14:23360281 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr14:81.40Mb]],deletion AKT1 NA EFS NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -AL008729.1--LRRC1 BS_58YXHGAJ NA 1.17646732292873 NA NA NA no change NA NA 6:13294796 6:53913854 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr6:40.50Mb]],inversion AL008729.1 NA LRRC1 NA NA NA NA NA NA -AL008729.1--LRRC1 BS_58YXHGAJ NA 1.17646732292873 NA NA NA no change NA NA 6:13295275 6:53913854 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr6:40.50Mb]],inversion AL008729.1 NA LRRC1 NA NA NA NA NA NA -AL035413.1--RERE BS_QKT3TJVK NA 1.37724337534317 NA NA NA no change NA NA 1:19210559 1:8656441 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr1:10.39Mb]],inversion AL035413.1 NA RERE NA NA Oncogene NA NA NA -AL162411.1--BNC2 BS_W7MFJZ5A NA 8.59568126800231 NA NA NA differentially expressed NA NA 9:6669728 9:16668679 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr9:9.74Mb]],deletion/5'-5' AL162411.1 NA BNC2 NA NA TranscriptionFactor NA NA NA -AL356599.1--AL008628.1(7241)/PSMB1(108551) BS_58YXHGAJ NA NA NA 0.644143871297847 NA NA NA no change 6:145815431 6:170426566 ARRIBA other 1 0 low [],inversion AL356599.1 NA AL008628.1 PSMB1 NA NA NA NA NA -AL365205.1--GRID1 BS_F0JB4EAK NA 0.267909532663567 NA NA NA no change NA NA 6:41789336 10:85729614 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr6--chr10]],translocation AL365205.1 NA GRID1 NA NA NA NA NA NA -AL390860.1--TRIM58 BS_RX1YTZ7F NA 12.3023516332915 NA NA NA differentially expressed NA NA 1:247640429 1:247860617 STARFUSION other 9 5 NA [INTRACHROMOSOMAL[chr1:0.11Mb]] AL390860.1 NA TRIM58 NA NA NA NA NA NA -AL445250.1--L3MBTL3 BS_58YXHGAJ NA 3.74260559436692 NA NA NA differentially expressed NA NA 6:58043527 6:130016226 STARFUSION other 5 2 NA [INTRACHROMOSOMAL[chr6:71.58Mb]] AL445250.1 NA L3MBTL3 NA NA TranscriptionFactor NA NA NA -AL445250.1--L3MBTL3 BS_58YXHGAJ NA 3.74260559436692 NA NA NA differentially expressed NA NA 6:58043527 6:130016226 ARRIBA other 5 2 high [INTRACHROMOSOMAL[chr6:71.58Mb]],deletion AL445250.1 NA L3MBTL3 NA NA TranscriptionFactor NA NA NA -AL445673.1--PRRX1(68185)/MROH9(127867) BS_2JP7RBMB NA 4.97116655144605 NA 5.79839201537425 NA differentially expressed NA differentially expressed 1:171247581 1:170807604 ARRIBA other 2 1 medium [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -AL449403.2--AC002996.1 BS_5VPM0F36 NA NA NA NA NA NA NA NA 9:96116246 12:111781918 ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr9--chr12]],translocation AL449403.2 NA AC002996.1 NA NA NA NA NA NA -AL449403.2--ALDH2 BS_5VPM0F36 NA -0.487006128445786 NA NA NA no change NA NA 9:96116246 12:111781918 ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr9--chr12]],translocation AL449403.2 NA ALDH2 NA NA CosmicCensus, Oncogene NA NA NA -AL589740.1--AFG1L BS_58YXHGAJ NA NA NA NA NA NA NA NA 6:97828206 6:108491453 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr6:9.90Mb]],inversion/3'-3' AL589740.1 NA AFG1L NA NA NA NA NA NA -AL590235.1(460)/LRPAP1(1459)--LRPAP1 BS_Z3RCA1T9 NA -0.566568087293199 -0.566568087293199 NA NA no change no change NA 4:3504917 4:3506442 ARRIBA other 1 2 medium [],duplication AL590235.1 LRPAP1 LRPAP1 NA NA NA NA NA NA -AL603840.1--MACF1 BS_W4H1D4Y6 NA -0.140002936850482 NA NA NA no change NA NA 1:55615002 1:39231182 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr1:16.09Mb]],duplication AL603840.1 NA MACF1 NA NA Oncogene NA NA NA -AL691447.2--ZNF782 BS_JGA9BP3A NA 1.37428866670318 NA NA NA no change NA NA 9:94339020 9:96861603 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr9:2.46Mb]],inversion AL691447.2 NA ZNF782 NA NA TranscriptionFactor NA NA NA -AL691447.2--ZNF782 BS_JGA9BP3A NA 1.37428866670318 NA NA NA no change NA NA 9:94339020 9:96845016 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr9:2.46Mb]],inversion AL691447.2 NA ZNF782 NA NA TranscriptionFactor NA NA NA -AL807752.7--CARNS1 BS_ZQ76ZBEX NA 1.87402968267346 NA NA NA no change NA NA 9:136977692 11:67419487 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr9--chr11]],translocation AL807752.7 NA CARNS1 NA NA NA NA NA NA -AL807752.7--HIP1R BS_R9B92M75 NA -0.214789975899585 NA NA NA no change NA NA 9:136977692 12:122858102 ARRIBA in-frame 2 1 low [INTERCHROMOSOMAL[chr9--chr12]],translocation AL807752.7 NA HIP1R NA NA NA NA NA NA -AL845472.1--CR786580.1(3419)/DUX4L50(170) BS_C83TK159 NA NA NA 2.08877554171599 NA NA NA differentially expressed 9:41272915 9:63817578 ARRIBA other 5 0 low [],inversion AL845472.1 NA CR786580.1 DUX4L50 NA NA NA NA NA -ALG12--LINC01660 BS_JGA9BP3A 1.09045919479851 NA NA NA no change NA NA NA 22:49904179 22:18389967 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr22:31.51Mb]],deletion ALG12 NA LINC01660 NA NA NA NA NA NA -AMPH--AC000111.1 BS_68KX6A42 -0.423165655047774 NA NA NA no change NA NA NA 7:38417825 7:117560792 ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chr7:78.93Mb]],duplication AMPH NA AC000111.1 NA NA NA NA NA NA -AMPH--AC000111.1 BS_68KX6A42 -0.423165655047774 NA NA NA no change NA NA NA 7:38422421 7:117560792 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:78.93Mb]],duplication AMPH NA AC000111.1 NA NA NA NA NA NA -AMPH--AC009531.1(159896)/AC007652.1(76396) BS_68KX6A42 -0.423165655047774 NA NA NA no change NA NA NA 7:38631283 7:35419625 ARRIBA frameshift 6 2 high [],deletion AMPH NA AC009531.1 AC007652.1 NA NA NA NA NA -AMPH--CFTR BS_68KX6A42 -0.423165655047774 0.187948043469921 NA NA no change no change NA NA 7:38422421 7:117537897 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr7:78.83Mb]],duplication/5'-5' AMPH NA CFTR NA NA TumorSuppressorGene NA NA NA -AMPH--SEMA3E BS_68KX6A42 -0.423165655047774 5.35280894577697 NA NA no change differentially expressed NA NA 7:38631283 7:83490274 ARRIBA frameshift 13 3 high [INTRACHROMOSOMAL[chr7:44.73Mb]],duplication AMPH NA SEMA3E NA NA NA NA NA NA -ANK2--AC009093.3 BS_0ZA67BBC -0.0504520036095168 NA NA NA no change NA NA NA 4:113174413 16:29082044 ARRIBA other 7 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation ANK2 NA AC009093.3 NA NA NA NA NA NA -ANK2--AC009093.3 BS_GWSJ4Z9H 0.0826406119529427 NA NA NA no change NA NA NA 4:113174413 16:29082044 ARRIBA other 9 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation ANK2 NA AC009093.3 NA NA NA NA NA NA -ANK2--AC009093.3 BS_H97S5SQN 0.361321082335031 NA NA NA no change NA NA NA 4:113174413 16:29082044 ARRIBA other 4 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation ANK2 NA AC009093.3 NA NA NA NA NA NA -ANK2--AC009093.3 BS_JGA9BP3A 1.43359651081726 NA NA NA no change NA NA NA 4:113174413 16:29082044 ARRIBA other 10 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation ANK2 NA AC009093.3 NA NA NA NA NA NA -ANK2--AC009093.3 BS_JQVAWTTM -0.320758469961932 NA NA NA no change NA NA NA 4:113174413 16:29082044 ARRIBA other 7 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation ANK2 NA AC009093.3 NA NA NA NA NA NA -ANK2--AC009093.3 BS_QNNX91SM -1.06776445069066 NA NA NA no change NA NA NA 4:113174413 16:29082044 ARRIBA other 6 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation ANK2 NA AC009093.3 NA NA NA NA NA NA -ANK2--AC009093.3 BS_X4DD4KSZ 0.0242193654816474 NA NA NA no change NA NA NA 4:113174413 16:29082044 ARRIBA other 5 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation ANK2 NA AC009093.3 NA NA NA NA NA NA -ANK2--AC009093.3 BS_ZF6BSFNF -0.560576418245644 NA NA NA no change NA NA NA 4:113174413 16:29082044 ARRIBA other 6 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation ANK2 NA AC009093.3 NA NA NA NA NA NA -ANKH--TRIO BS_KBEX4RT2 3.5736039183275 4.40931717555727 NA NA differentially expressed differentially expressed NA NA 5:14871352 5:14270825 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr5:0.17Mb]],inversion ANKH NA TRIO NA NA Kinase, Oncogene, Kinase NA NA NA -ANKH--Y_RNA(21641)/AC092266.1(55398) BS_W4H1D4Y6 4.4596199499898 -0.162236315085263 NA NA differentially expressed no change NA NA 5:14871352 5:2206461 ARRIBA frameshift 12 1 medium [],deletion ANKH NA Y_RNA AC092266.1 NA NA NA NA NA -ANKH--Y_RNA(44820)/AC092266.1(32219) BS_W4H1D4Y6 4.4596199499898 -0.162236315085263 NA NA differentially expressed no change NA NA 5:14871352 5:2229640 ARRIBA frameshift 1 0 low [],deletion ANKH NA Y_RNA AC092266.1 NA NA NA NA NA -ANKHD1--SPARC BS_KBEX4RT2 -0.327561651904508 2.1190386644916 NA NA no change differentially expressed NA NA 5:140438617 5:151676201 ARRIBA in-frame 2 1 low [INTRACHROMOSOMAL[chr5:11.12Mb]],inversion ANKHD1 NA SPARC NA NA TumorSuppressorGene NA NA NA -ANKHD1-EIF4EBP3--SPARC BS_KBEX4RT2 -0.999381346613629 2.1190386644916 NA NA no change differentially expressed NA NA 5:140438617 5:151676201 ARRIBA in-frame 2 1 low [INTRACHROMOSOMAL[chr5:11.11Mb]],inversion ANKHD1-EIF4EBP3 NA SPARC NA NA TumorSuppressorGene NA NA NA -ANKRD27--AC008555.2 BS_W4H1D4Y6 -0.945140803429531 NA NA NA no change NA NA NA 19:32675071 19:34850692 STARFUSION other 10 0 NA [INTRACHROMOSOMAL[chr19:2.16Mb]] ANKRD27 NA AC008555.2 NA NA NA NA NA NA -ANKRD27--AC008555.2 BS_W4H1D4Y6 -0.945140803429531 NA NA NA no change NA NA NA 19:32675071 19:34850692 ARRIBA other 10 0 high [INTRACHROMOSOMAL[chr19:2.16Mb]],inversion ANKRD27 NA AC008555.2 NA NA NA NA NA NA -ANKRD27--AC008555.3 BS_W4H1D4Y6 -0.945140803429531 NA NA NA no change NA NA NA 19:32675071 19:34904094 ARRIBA other 9 0 high [INTRACHROMOSOMAL[chr19:2.23Mb]],inversion/5'-5' ANKRD27 NA AC008555.3 NA NA NA NA NA NA -ANKRD33B--AC091912.1(15408)/LINC02226(160285) BS_68KX6A42 0.941383700338804 NA NA NA no change NA NA NA 5:10564833 5:8173196 ARRIBA frameshift 3 0 high [],duplication ANKRD33B NA AC091912.1 LINC02226 NA NA NA NA NA -ANKRD33B--DAP BS_68KX6A42 0.941383700338804 1.3499716009603 NA NA no change no change NA NA 5:10564833 5:10748271 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr5:0.02Mb],LOCAL_INVERSION:+:-:[21414]],inversion ANKRD33B NA DAP NA NA NA NA NA NA -ANKRD33B--DAP BS_68KX6A42 0.941383700338804 1.3499716009603 NA NA no change no change NA NA 5:10618462 5:10748271 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr5:0.02Mb],LOCAL_INVERSION:+:-:[21414]],inversion ANKRD33B NA DAP NA NA NA NA NA NA -ANKRD33B--DAP BS_68KX6A42 0.941383700338804 1.3499716009603 NA NA no change no change NA NA 5:10618462 5:10683571 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr5:0.02Mb],LOCAL_INVERSION:+:-:[21414]],inversion ANKRD33B NA DAP NA NA NA NA NA NA -ANKRD33B--LINC00930(1262)/AC091544.2(7525) BS_68KX6A42 0.941383700338804 2.4170247207242 NA NA no change differentially expressed NA NA 5:10618462 15:92573304 ARRIBA frameshift 1 3 high [],translocation ANKRD33B NA LINC00930 AC091544.2 NA NA NA NA NA -AP000229.1--AP001596.1 BS_W1385R8Y NA NA NA NA NA NA NA NA 21:26215829 21:26387724 STARFUSION other 20 19 NA [INTRACHROMOSOMAL[chr21:0.16Mb]] AP000229.1 NA AP001596.1 NA NA NA NA NA NA -AP000229.1--AP001596.1 BS_W1385R8Y NA NA NA NA NA NA NA NA 21:26215829 21:26470751 STARFUSION other 9 19 NA [INTRACHROMOSOMAL[chr21:0.16Mb]] AP000229.1 NA AP001596.1 NA NA NA NA NA NA -AP000229.1--CYYR1-AS1 BS_W1385R8Y NA 3.05800482249689 NA NA NA differentially expressed NA NA 21:26215829 21:26503582 STARFUSION other 4 8 NA [INTRACHROMOSOMAL[chr21:0.18Mb]] AP000229.1 NA CYYR1-AS1 NA NA NA NA NA NA -AP000229.1--CYYR1-AS1 BS_W1385R8Y NA 3.05800482249689 NA NA NA differentially expressed NA NA 21:26215829 21:26387724 STARFUSION other 3 8 NA [INTRACHROMOSOMAL[chr21:0.18Mb]] AP000229.1 NA CYYR1-AS1 NA NA NA NA NA NA -AP003972.1--OPCML(192848)/AP001979.2(58304) BS_W4H1D4Y6 NA -0.911829576294922 NA NA NA no change NA NA 11:133297188 11:133725367 ARRIBA other 1 1 medium [],deletion AP003972.1 NA OPCML AP001979.2 NA TumorSuppressorGene, Oncogene NA NA NA -AP2A2--DIAPH3 BS_C83TK159 -0.060582560717404 1.70943261736849 NA NA no change no change NA NA 11:926088 13:60024741 ARRIBA frameshift 7 0 medium [INTERCHROMOSOMAL[chr11--chr13]],translocation/5'-5' AP2A2 NA DIAPH3 NA NA NA NA NA NA -AP2A2--DIAPH3-AS1 BS_C83TK159 -0.060582560717404 98.0139928262248 NA NA no change differentially expressed NA NA 11:926088 13:60020921 STARFUSION other 40 4 NA [INTERCHROMOSOMAL[chr11--chr13]] AP2A2 NA DIAPH3-AS1 NA NA NA NA NA NA -AP2A2--DIAPH3-AS1 BS_C83TK159 -0.060582560717404 98.0139928262248 NA NA no change differentially expressed NA NA 11:926088 13:60020921 ARRIBA frameshift 37 4 high [INTERCHROMOSOMAL[chr11--chr13]],translocation AP2A2 NA DIAPH3-AS1 NA NA NA NA NA NA -APLP2--PACS1 BS_ZD5HN296 1.48660987135436 0.793018924807696 NA NA no change no change NA NA 11:130140483 11:66227504 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:63.83Mb]],duplication APLP2 NA PACS1 NA NA NA NA NA NA -APP--CYYR1 BS_W4H1D4Y6 2.65842051075724 4.63071975465881 NA NA differentially expressed differentially expressed NA NA 21:25954590 21:26566368 ARRIBA in-frame 1 0 low [Klijn_CellLines,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication APP NA CYYR1 NA NA NA NA NA NA -APTR--RSBN1L BS_68KX6A42 1.92335163257583 2.01436962872652 NA NA no change differentially expressed NA NA 7:77695896 7:77757346 ARRIBA other 4 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_INVERSION:-:+:[178]],duplication/5'-5' APTR NA RSBN1L NA NA NA NA NA NA -ARHGAP19-SLIT1--PLEKHS1(24657)/SNORA17(12373) BS_EZ3147MX 5.07851626749791 -0.279720866148544 NA -0.361349273027193 differentially expressed no change NA no change 10:97157818 10:113808086 ARRIBA frameshift 15 3 high [],inversion ARHGAP19-SLIT1 NA PLEKHS1 SNORA17 NA NA NA NA NA -ARHGAP33--AC016590.1 BS_RX1YTZ7F 0.0317418884435027 NA NA NA no change NA NA NA 19:35781252 19:37267799 STARFUSION other 5 3 NA [INTRACHROMOSOMAL[chr19:1.48Mb]] ARHGAP33 NA AC016590.1 NA NA NA NA NA NA -ARHGAP33--AC016590.1 BS_RX1YTZ7F 0.0317418884435027 NA NA NA no change NA NA NA 19:35781252 19:37267799 ARRIBA frameshift 5 3 high [INTRACHROMOSOMAL[chr19:1.48Mb]],inversion ARHGAP33 NA AC016590.1 NA NA NA NA NA NA -ARHGAP42--YAP1 BS_X4DD4KSZ 6.17986761171091 2.43657489212946 NA NA differentially expressed differentially expressed NA NA 11:100687832 11:102114144 STARFUSION frameshift 28 5 NA [INTRACHROMOSOMAL[chr11:1.12Mb]] ARHGAP42 NA YAP1 NA NA TumorSuppressorGene, Oncogene NA NA NA -ARHGAP42--YAP1 BS_X4DD4KSZ 6.17986761171091 2.43657489212946 NA NA differentially expressed differentially expressed NA NA 11:100738498 11:102114144 STARFUSION other 10 5 NA [INTRACHROMOSOMAL[chr11:1.12Mb]] ARHGAP42 NA YAP1 NA NA TumorSuppressorGene, Oncogene NA NA NA -ARHGAP42--YAP1 BS_X4DD4KSZ 6.17986761171091 2.43657489212946 NA NA differentially expressed differentially expressed NA NA 11:100687832 11:102114144 ARRIBA frameshift 27 3 high [INTRACHROMOSOMAL[chr11:1.12Mb]],deletion ARHGAP42 NA YAP1 NA NA TumorSuppressorGene, Oncogene NA NA NA -ARHGAP42--YAP1 BS_X4DD4KSZ 6.17986761171091 2.43657489212946 NA NA differentially expressed differentially expressed NA NA 11:100738498 11:102114144 ARRIBA other 9 4 high [INTRACHROMOSOMAL[chr11:1.12Mb]],deletion ARHGAP42 NA YAP1 NA NA TumorSuppressorGene, Oncogene NA NA NA -ARHGAP42--YAP1 BS_X4DD4KSZ 6.17986761171091 2.43657489212946 NA NA differentially expressed differentially expressed NA NA 11:100687832 11:102162456 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:1.12Mb]],deletion ARHGAP42 NA YAP1 NA NA TumorSuppressorGene, Oncogene NA NA NA -ARHGAP45--AC008764.8 BS_PXCPK5XS NA NA NA NA NA NA NA NA 19:1083066 19:16572817 ARRIBA frameshift 115 30 high [INTRACHROMOSOMAL[chr19:15.49Mb]],inversion/3'-3' ARHGAP45 NA AC008764.8 NA NA NA NA NA NA -ARHGEF2--CCT3 BS_BMMY0H73 1.68612282566568 1.69629794220698 NA NA no change no change NA NA 1:155983107 1:156334918 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.30Mb]],duplication ARHGEF2 NA CCT3 NA Oncogene NA NA NA TCGAFusion -ARID1B--AL390955.2(1370)/AL390955.1(40143) BS_58YXHGAJ 2.03584666823131 NA NA NA differentially expressed NA NA NA 6:156829421 6:157325847 ARRIBA frameshift 31 8 high [],inversion ARID1B NA AL390955.2 AL390955.1 CosmicCensus, Oncogene NA NA NA NA -ARID1B--TMEM242 BS_58YXHGAJ 2.03584666823131 2.0952657833042 NA NA differentially expressed differentially expressed NA NA 6:156829421 6:157318919 STARFUSION in-frame 18 7 NA [CCLE,INTRACHROMOSOMAL[chr6:0.08Mb],LOCAL_INVERSION:+:-:[78607]] ARID1B NA TMEM242 NA CosmicCensus, Oncogene NA NA NA NA -ARID1B--TMEM242 BS_58YXHGAJ 2.03584666823131 2.0952657833042 NA NA differentially expressed differentially expressed NA NA 6:156829421 6:157292999 STARFUSION in-frame 4 7 NA [CCLE,INTRACHROMOSOMAL[chr6:0.08Mb],LOCAL_INVERSION:+:-:[78607]] ARID1B NA TMEM242 NA CosmicCensus, Oncogene NA NA NA NA -ARID1B--TMEM242 BS_58YXHGAJ 2.03584666823131 2.0952657833042 NA NA differentially expressed differentially expressed NA NA 6:156829421 6:157322805 STARFUSION frameshift 4 7 NA [CCLE,INTRACHROMOSOMAL[chr6:0.08Mb],LOCAL_INVERSION:+:-:[78607]] ARID1B NA TMEM242 NA CosmicCensus, Oncogene NA NA NA NA -ARID1B--TMEM242 BS_58YXHGAJ 2.03584666823131 2.0952657833042 NA NA differentially expressed differentially expressed NA NA 6:156829421 6:157318919 ARRIBA in-frame 18 6 high [CCLE,INTRACHROMOSOMAL[chr6:0.08Mb],LOCAL_INVERSION:+:-:[78607]],inversion ARID1B NA TMEM242 NA CosmicCensus, Oncogene NA NA NA NA -ARID1B--TMEM242 BS_58YXHGAJ 2.03584666823131 2.0952657833042 NA NA differentially expressed differentially expressed NA NA 6:156829421 6:157322805 ARRIBA frameshift 4 7 high [CCLE,INTRACHROMOSOMAL[chr6:0.08Mb],LOCAL_INVERSION:+:-:[78607]],inversion ARID1B NA TMEM242 NA CosmicCensus, Oncogene NA NA NA NA -ARID1B--TMEM242 BS_58YXHGAJ 2.03584666823131 2.0952657833042 NA NA differentially expressed differentially expressed NA NA 6:156829421 6:157292999 ARRIBA in-frame 4 4 high [CCLE,INTRACHROMOSOMAL[chr6:0.08Mb],LOCAL_INVERSION:+:-:[78607]],inversion ARID1B NA TMEM242 NA CosmicCensus, Oncogene NA NA NA NA -ARID3A--MED16 BS_PXCPK5XS 2.08844486073757 2.37567191231519 NA NA differentially expressed differentially expressed NA NA 19:932647 19:887848 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr19:0.03Mb],LOCAL_INVERSION:+:-:[32563]],duplication/5'-5' ARID3A NA MED16 NA TranscriptionFactor NA NA NA NA -ARID4B--AL512328.1 BS_HWGWYCY7 0.838655782425676 NA NA NA no change NA NA NA 1:235326914 1:230776748 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:4.34Mb]],deletion ARID4B NA AL512328.1 NA NA NA NA NA NA -ARL10--PGD BS_JB43XBCQ 0.878161339492729 2.1799035515193 NA NA no change differentially expressed NA NA 5:176368982 1:10403071 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr5--chr1]],translocation ARL10 NA PGD NA NA NA NA NA NA -ARMC8--LINC00701(68699)/AC024908.1(62479) BS_GWSJ4Z9H 2.60646575553117 -0.0891232582986933 NA NA differentially expressed no change NA NA 3:138273116 10:2383774 ARRIBA frameshift 3 0 medium [],translocation ARMC8 NA LINC00701 AC024908.1 NA NA NA NA NA -ARNT2--MALL BS_W1385R8Y -1.12769721912889 4.46382083440708 NA NA no change differentially expressed NA NA 15:80404546 2:110097889 ARRIBA frameshift 8 1 high [INTERCHROMOSOMAL[chr15--chr2]],translocation/5'-5' ARNT2 NA MALL NA TranscriptionFactor NA NA NA NA -ARSA--NF2 BS_JGA9BP3A -0.722629502188629 -0.0277482287379935 NA NA no change no change NA NA 22:50625363 22:29660158 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr22:20.92Mb]],deletion/5'-5' ARSA NA NF2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -ASAP2--AC064875.1 BS_X0XXN9BK 0.818366500299653 NA NA NA no change NA NA NA 2:9335179 2:12988219 ARRIBA frameshift 5 4 high [INTRACHROMOSOMAL[chr2:3.56Mb]],deletion/5'-5' ASAP2 NA AC064875.1 NA NA NA NA NA NA -ASAP2--TRIB2(219106)/AC064875.1(4944) BS_X0XXN9BK 0.818366500299653 2.46909600584101 NA NA no change differentially expressed NA NA 2:9335179 2:12961840 ARRIBA frameshift 16 7 high [],deletion ASAP2 NA TRIB2 AC064875.1 NA Kinase NA NA NA -ASH1L--BNIP3P41(34869) BS_Z3RCA1T9 1.04002297398583 -0.154607014039302 NA NA no change no change NA NA 1:155459799 4:14227 ARRIBA frameshift 1 2 high [],translocation ASH1L NA BNIP3P41 NA TranscriptionFactor NA NA NA NA -ASH1L--DUX4L2(26082)/DUX4(55413) BS_Z3RCA1T9 1.04002297398583 NA NA -0.595069764557869 no change NA NA no change 1:155459797 4:190118361 ARRIBA frameshift 19 5 high [],translocation ASH1L NA DUX4L2 DUX4 TranscriptionFactor NA NA Oncogene, TranscriptionFactor NA -ASPH--FARS2 BS_W1385R8Y -0.0759994587440889 1.27995198260657 NA NA no change no change NA NA 8:61680970 6:5545178 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr8--chr6]],translocation ASPH NA FARS2 NA NA NA NA NA NA -ASPH--LRBA BS_W7MFJZ5A -0.256409801367408 0.726588291805817 NA NA no change no change NA NA 8:61680967 4:150286033 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr8--chr4]],translocation ASPH NA LRBA NA NA Oncogene NA NA NA -ASPH--SIAH1 BS_S6Q7NKA3 -0.235385032554014 3.48329318434059 NA NA no change differentially expressed NA NA 8:61680970 16:48362432 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr8--chr16]],translocation ASPH NA SIAH1 NA NA TumorSuppressorGene NA NA NA -ATF7IP--PAG1 BS_HWGWYCY7 2.92246165947078 0.89876502781246 NA NA differentially expressed no change NA NA 12:14385400 8:80993307 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr12--chr8]],translocation ATF7IP NA PAG1 NA Oncogene NA NA NA NA -ATP13A4--FGF12 BS_C83TK159 0.328676615684788 1.97457999047181 NA NA no change no change NA NA 3:193581707 3:192170656 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:0.63Mb]],deletion ATP13A4 NA FGF12 NA NA Oncogene NA NA NA -ATP1B1--DNMT3A BS_HWGWYCY7 -0.403443550519799 1.41401228026198 NA NA no change no change NA NA 1:169127410 2:25248250 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr1--chr2]],translocation ATP1B1 NA DNMT3A NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -ATP6AP1L--RPS23(647)/ATP6AP1L(238) BS_KBEX4RT2 1.09012185085392 -0.322801853206843 NA 1.09012185085392 no change no change NA no change 5:82305044 5:82279224 ARRIBA other 2 1 medium [],duplication ATP6AP1L NA RPS23 ATP6AP1L NA NA NA NA NA -ATP6V0A2--OASL BS_BMMY0H73 4.42106186687156 3.94587419970364 NA NA differentially expressed differentially expressed NA NA 12:123722448 12:121020320 ARRIBA frameshift 9 7 high [INTRACHROMOSOMAL[chr12:2.67Mb]],duplication/5'-5' ATP6V0A2 NA OASL NA NA NA NA NA NA -ATP6V0E2--AC092100.1 BS_68KX6A42 -0.999866019721903 NA NA NA no change NA NA NA 7:149878790 7:69272398 STARFUSION other 15 9 NA [INTRACHROMOSOMAL[chr7:80.44Mb]] ATP6V0E2 NA AC092100.1 NA NA NA NA NA NA -ATP6V0E2--AC092100.1 BS_68KX6A42 -0.999866019721903 NA NA NA no change NA NA NA 7:149878790 7:69272398 ARRIBA frameshift 14 8 high [INTRACHROMOSOMAL[chr7:80.44Mb]],inversion ATP6V0E2 NA AC092100.1 NA NA NA NA NA NA -ATP6V1B2--KAT6A(37409)/AC103724.1(11919) BS_HWGWYCY7 1.41538784632188 1.94559654364499 NA NA no change no change NA NA 8:20204539 8:42089399 ARRIBA frameshift 10 3 medium [],deletion ATP6V1B2 NA KAT6A AC103724.1 NA CosmicCensus, Oncogene NA NA NA -ATP7A--ATRX BS_1N7MQZGR 3.50132648842776 1.20680278223217 NA NA differentially expressed no change NA NA X:77910835 X:77523401 ARRIBA other 1 1 high [INTRACHROMOSOMAL[chrX:0.12Mb]],inversion ATP7A NA ATRX NA NA CosmicCensus, Oncogene NA NA NA -ATP7A--COX7B BS_X4DD4KSZ 6.11387812267212 -0.512085780111193 NA NA differentially expressed no change NA NA X:77910835 X:77902643 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:+:[3283]],duplication ATP7A NA COX7B NA NA NA NA NA NA -ATP7A--COX7B BS_X4DD4KSZ 6.11387812267212 -0.512085780111193 NA NA differentially expressed no change NA NA X:78020398 X:77905184 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:+:[3283]],duplication ATP7A NA COX7B NA NA NA NA NA NA -ATRNL1--VWA2 BS_HWGWYCY7 1.82302746448415 2.57514426899051 NA NA no change differentially expressed NA NA 10:115129535 10:114277914 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr10:0.80Mb]],duplication ATRNL1 NA VWA2 NA NA NA NA NA NA -ATXN7L1--PSPH BS_68KX6A42 0.202641026214518 1.72873291511697 NA NA no change no change NA NA 7:105788604 7:56021231 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:49.55Mb]],deletion ATXN7L1 NA PSPH NA NA NA NA NA NA -AUTS2--AC092100.1 BS_H97S5SQN 2.15342936716001 NA NA NA differentially expressed NA NA NA 7:70134571 7:69388333 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr7:0.17Mb]],inversion AUTS2 NA AC092100.1 NA NA NA NA NA NA -AUTS2--CARD11 BS_JB43XBCQ -0.130506696723083 4.9228092512151 NA NA no change differentially expressed NA NA 7:69599962 7:2939928 STARFUSION in-frame 17 7 NA [INTRACHROMOSOMAL[chr7:66.55Mb]] AUTS2 NA CARD11 NA NA CosmicCensus, Oncogene NA NA NA -AUTS2--CARD11 BS_JB43XBCQ -0.130506696723083 4.9228092512151 NA NA no change differentially expressed NA NA 7:69599962 7:2939928 ARRIBA in-frame 15 7 high [INTRACHROMOSOMAL[chr7:66.55Mb]],inversion AUTS2 NA CARD11 NA NA CosmicCensus, Oncogene NA NA NA -AUTS2--LINC01449(165857)/INHBA(367804) BS_68KX6A42 0.376743638585233 1.18127560229625 NA 1.79584900433494 no change no change NA no change 7:70698620 7:41299364 ARRIBA frameshift 14 1 high [],duplication AUTS2 NA LINC01449 INHBA NA NA NA NA NA -AUTS2--RNF216 BS_68KX6A42 0.376743638585233 2.55724427904619 NA NA no change differentially expressed NA NA 7:69599962 7:5652510 STARFUSION in-frame 61 11 NA [INTRACHROMOSOMAL[chr7:63.82Mb]] AUTS2 NA RNF216 NA NA Oncogene NA NA NA -AUTS2--RNF216 BS_68KX6A42 0.376743638585233 2.55724427904619 NA NA no change differentially expressed NA NA 7:69599962 7:5652510 ARRIBA in-frame 58 9 high [INTRACHROMOSOMAL[chr7:63.82Mb]],inversion AUTS2 NA RNF216 NA NA Oncogene NA NA NA -AUTS2--RNF216 BS_68KX6A42 0.376743638585233 2.55724427904619 NA NA no change differentially expressed NA NA 7:69599962 7:5641376 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:63.82Mb]],inversion AUTS2 NA RNF216 NA NA Oncogene NA NA NA -AUTS2--RNU6-832P(47369)/AC069280.1(15088) BS_H97S5SQN 2.15342936716001 NA NA NA differentially expressed NA NA NA 7:70134571 7:69172745 ARRIBA frameshift 4 1 high [],inversion AUTS2 NA RNU6-832P AC069280.1 NA NA NA NA NA -AUTS2--UNC93B2 BS_68KX6A42 0.376743638585233 1.29010055003266 NA NA no change no change NA NA 7:70698620 7:6858058 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr7:62.74Mb]],duplication/5'-5' AUTS2 NA UNC93B2 NA NA NA NA NA NA -AUTS2--ZNF786 BS_68KX6A42 0.376743638585233 2.22119322799995 NA NA no change differentially expressed NA NA 7:70637927 7:149080717 ARRIBA other 2 5 high [INTRACHROMOSOMAL[chr7:78.28Mb]],duplication/3'-3' AUTS2 NA ZNF786 NA NA TranscriptionFactor NA NA NA -AVL9--AC007285.1 BS_68KX6A42 0.843812852394597 NA NA NA no change NA NA NA 7:32495802 7:30025387 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:2.47Mb]],duplication AVL9 NA AC007285.1 NA NA NA NA NA NA -AVL9--AC007285.1 BS_68KX6A42 0.843812852394597 NA NA NA no change NA NA NA 7:32495802 7:30008228 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:2.47Mb]],duplication AVL9 NA AC007285.1 NA NA NA NA NA NA -AZIN1--RSPO2 BS_6M2053M0 2.05216446663748 -0.791762412294235 NA NA differentially expressed no change NA NA 8:102858013 8:107918170 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr8:5.01Mb]],inversion/5'-5' AZIN1 NA RSPO2 NA NA CosmicCensus, Oncogene NA NA NA -BACE2--AP001610.1 BS_BMMY0H73 3.26271918070439 NA NA NA differentially expressed NA NA NA 21:41168575 21:41442746 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr21:0.16Mb]],inversion BACE2 NA AP001610.1 NA NA NA NA NA NA -BBS9--PKD1L1 BS_68KX6A42 2.34253464994076 0.687487473154648 NA NA differentially expressed no change NA NA 7:33534176 7:47821186 ARRIBA frameshift 2 0 low [ChimerKB,Cosmic,INTRACHROMOSOMAL[chr7:14.17Mb]],inversion BBS9 NA PKD1L1 NA NA NA NA NA NA -BBS9--RNU6-1103P(10055)/MPP6(25775) BS_68KX6A42 2.34253464994076 NA NA -0.140039492134722 differentially expressed NA NA no change 7:33177591 7:24547493 ARRIBA frameshift 4 3 high [],duplication BBS9 NA RNU6-1103P MPP6 NA NA NA NA NA -BCCIP--AL359878.2(4563)/AL359878.1(23840) BS_H97S5SQN 2.42762152062919 NA NA NA differentially expressed NA NA NA 10:125841330 10:947306 ARRIBA frameshift 2 0 medium [],duplication BCCIP NA AL359878.2 AL359878.1 NA NA NA NA NA -BCL11A--ALK BS_SNVM7CZT 0.664375740604739 7.2265596356457 NA NA no change differentially expressed NA NA 2:60545971 2:29223528 STARFUSION in-frame 54 23 NA [INTRACHROMOSOMAL[chr2:30.53Mb]] BCL11A NA ALK NA CosmicCensus, Oncogene, TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -BCL11A--ALK BS_SNVM7CZT 0.664375740604739 7.2265596356457 NA NA no change differentially expressed NA NA 2:60545971 2:29223528 ARRIBA in-frame 42 20 high [INTRACHROMOSOMAL[chr2:30.53Mb]],deletion BCL11A NA ALK NA CosmicCensus, Oncogene, TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -BCL11B--LINC01550(52483)/AL163932.1(37633) BS_JB43XBCQ -0.0513766655742274 2.83027856900406 NA NA no change differentially expressed NA NA 14:99231345 14:98030607 ARRIBA frameshift 1 1 high [],inversion BCL11B NA LINC01550 AL163932.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -BCL2L1--SMDT1 BS_XGDPK33A 1.4383023741181 -0.415193101001129 NA NA no change no change NA NA 20:31721655 22:42080582 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr20--chr22]],translocation/5'-5' BCL2L1 NA SMDT1 NA Oncogene NA NA NA NA -BCL2L2--AP001412.1(70957)/AP001437.1(26023) BS_HWGWYCY7 -2.91055988769935 -0.107862011727848 NA 2.74111799431565 differentially expressed no change NA differentially expressed 14:23308199 21:37339454 ARRIBA frameshift 3 0 medium [],translocation BCL2L2 NA AP001412.1 AP001437.1 Oncogene NA NA NA NA -BCL2L2-PABPN1--AP001412.1(70957)/AP001437.1(26023) BS_HWGWYCY7 2.1613973572693 -0.107862011727848 NA 2.74111799431565 differentially expressed no change NA differentially expressed 14:23308199 21:37339454 ARRIBA frameshift 3 0 medium [],translocation BCL2L2-PABPN1 NA AP001412.1 AP001437.1 NA NA NA NA NA -BEND3--FABP7 BS_58YXHGAJ 3.93376318458494 0.705908174951238 NA NA differentially expressed no change NA NA 6:107098551 6:122781093 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr6:15.66Mb]],inversion BEND3 NA FABP7 NA NA NA NA NA NA -BEND3--REPS1 BS_58YXHGAJ 3.93376318458494 -0.892678900482559 NA NA differentially expressed no change NA NA 6:107098551 6:138980769 ARRIBA frameshift 8 10 high [INTRACHROMOSOMAL[chr6:31.79Mb]],inversion/5'-5' BEND3 NA REPS1 NA NA NA NA NA NA -BICC1--AC096558.1 BS_BMMY0H73 3.13354101807493 0.806838206084646 NA NA differentially expressed no change NA NA 10:58785080 2:143351396 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr10--chr2]],translocation BICC1 NA AC096558.1 NA NA NA NA NA NA -BICD1--CPSF6 BS_QKT3TJVK 5.0207097394672 3.78278157449424 NA NA differentially expressed differentially expressed NA NA 12:32107544 12:69251129 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:36.86Mb]],deletion BICD1 NA CPSF6 NA NA NA NA NA NA -BLOC1S2--SPECC1L BS_PXCPK5XS -0.639051451449147 1.81314509580703 NA NA no change no change NA NA 10:100286097 22:24334410 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr10--chr22]],translocation BLOC1S2 NA SPECC1L NA NA NA NA NA NA -BLOC1S2--SPECC1L-ADORA2A BS_PXCPK5XS -0.639051451449147 -0.123881886427942 NA NA no change no change NA NA 10:100286097 22:24334410 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr10--chr22]],translocation BLOC1S2 NA SPECC1L-ADORA2A NA NA NA NA NA NA -BLOC1S5--JARID2 BS_58YXHGAJ 1.91051148778194 -0.331881199756195 NA NA no change no change NA NA 6:8062534 6:15410224 STARFUSION frameshift 5 2 NA [INTRACHROMOSOMAL[chr6:7.18Mb]] BLOC1S5 NA JARID2 NA NA NA NA NA NA -BLOC1S5--JARID2 BS_58YXHGAJ 1.91051148778194 -0.331881199756195 NA NA no change no change NA NA 6:8062534 6:15410224 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr6:7.18Mb]],inversion BLOC1S5 NA JARID2 NA NA NA NA NA NA -BLOC1S5-TXNDC5--JARID2 BS_58YXHGAJ -3.38003670109472 -0.331881199756195 NA NA differentially expressed no change NA NA 6:8062534 6:15410224 ARRIBA other 5 2 high [],inversion BLOC1S5-TXNDC5 NA JARID2 NA NA NA NA NA NA -BMP2K--AC124016.1(15891)/IGBP1P4(1660) BS_1N7MQZGR 3.03935825117924 NA NA -0.497820617402424 differentially expressed NA NA no change 4:78833687 4:82399918 ARRIBA frameshift 2 0 medium [],deletion BMP2K NA AC124016.1 IGBP1P4 Kinase NA NA NA NA -BMP2K--RPS23P3(431596)/RNU6-699P(34145) BS_7WM3MNZ0 3.03935825117924 -0.0805791472287598 NA NA differentially expressed no change NA NA 4:78826155 4:66863117 ARRIBA frameshift 2 0 high [],inversion BMP2K NA RPS23P3 RNU6-699P Kinase NA NA NA NA -BMPR1B--PDLIM5 BS_1N7MQZGR 2.46119257307208 3.44360936538677 NA NA differentially expressed differentially expressed NA NA 4:94875900 4:94654460 ARRIBA other 1 0 low [GTEx,CCLE,INTRACHROMOSOMAL[chr4:0.09Mb],LOCAL_REARRANGEMENT:+:[89741]],duplication BMPR1B NA PDLIM5 NA Kinase, Kinase NA NA NA TCGAFusion -BMPR1B--PDLIM5 BS_1N7MQZGR 2.46119257307208 3.44360936538677 NA NA differentially expressed differentially expressed NA NA 4:94758068 4:94573351 ARRIBA other 1 0 low [GTEx,CCLE,INTRACHROMOSOMAL[chr4:0.09Mb],LOCAL_REARRANGEMENT:+:[89741]],duplication BMPR1B NA PDLIM5 NA Kinase, Kinase NA NA NA TCGAFusion -BMS1P10(5741)/AL591438.1(195502)--FBP2 BS_W7MFJZ5A 2.02708258823566 1.39093143298966 NA NA differentially expressed no change NA NA 9:63385752 9:94587469 ARRIBA other 5 2 high [],inversion BMS1P10 AL591438.1 FBP2 NA NA NA NA NA NA -BMT2--DYNC1I1 BS_68KX6A42 NA -1.25091413030053 NA NA NA no change NA NA 7:112939591 7:96016749 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr7:16.71Mb]],deletion/5'-5' BMT2 NA DYNC1I1 NA NA NA NA NA NA -BMT2--SLC5A1 BS_GWSJ4Z9H NA 13.752994599573 NA NA NA differentially expressed NA NA 7:112895569 22:32099183 ARRIBA in-frame 7 3 high [INTERCHROMOSOMAL[chr7--chr22]],translocation BMT2 NA SLC5A1 NA NA NA NA NA NA -BMT2--SLC5A1 BS_GWSJ4Z9H NA 13.752994599573 NA NA NA differentially expressed NA NA 7:112895569 22:32104786 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr7--chr22]],translocation BMT2 NA SLC5A1 NA NA NA NA NA NA -BMT2--SLC5A1 BS_GWSJ4Z9H NA 13.752994599573 NA NA NA differentially expressed NA NA 7:112895569 22:32102022 ARRIBA frameshift 1 2 high [INTERCHROMOSOMAL[chr7--chr22]],translocation BMT2 NA SLC5A1 NA NA NA NA NA NA -BOP1--ILF2 BS_GWSJ4Z9H 0.689244803697917 3.49787458854502 NA NA no change differentially expressed NA NA 8:144264917 1:153662795 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr8--chr1]],translocation BOP1 NA ILF2 NA Oncogene NA NA NA NA -BPTF--CDC42EP4 BS_BMMY0H73 0.318395230226004 1.55219699937145 NA NA no change no change NA NA 17:67920143 17:73286612 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr17:5.30Mb]],inversion BPTF NA CDC42EP4 NA TranscriptionFactor NA NA NA NA -BRAF--FOXK1 BS_68KX6A42 1.40251569652281 1.79354113115153 NA NA no change no change NA NA 7:140924566 7:4740838 ARRIBA frameshift 3 3 high [INTRACHROMOSOMAL[chr7:135.95Mb]],inversion BRAF NA FOXK1 NA Kinase, CosmicCensus, Oncogene, Kinase TranscriptionFactor NA NA NA -BRSK2--AL078612.2 BS_ZD5HN296 -2.40002688639666 NA NA NA differentially expressed NA NA NA 11:1390375 11:32143144 STARFUSION other 33 9 NA [INTRACHROMOSOMAL[chr11:30.67Mb]] BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA -BRSK2--AL078612.2 BS_ZD5HN296 -2.40002688639666 NA NA NA differentially expressed NA NA NA 11:1390375 11:32143144 ARRIBA frameshift 32 6 high [INTRACHROMOSOMAL[chr11:30.67Mb]],deletion BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA -BRSK2--AL078612.2 BS_ZD5HN296 -2.40002688639666 NA NA NA differentially expressed NA NA NA 11:1390375 11:32137121 ARRIBA frameshift 1 9 high [INTRACHROMOSOMAL[chr11:30.67Mb]],deletion BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA -BTBD1--DCP1B BS_GWSJ4Z9H 1.49306604173827 1.04783398647237 NA NA no change no change NA NA 15:83066751 12:1967910 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr15--chr12]],translocation BTBD1 NA DCP1B NA NA NA NA NA NA -BTF3P15(108405)/AL390123.1(18419)--AKAP10 BS_NGSG2KB6 NA -0.602733386869675 NA NA NA no change NA NA 10:109643395 17:19947632 ARRIBA other 3 1 medium [],translocation BTF3P15 AL390123.1 AKAP10 NA NA NA NA NA NA -BTRC--ADARB2 BS_EZ3147MX -0.164985830636128 -0.156989288153003 NA NA no change no change NA NA 10:101462058 10:1248650 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr10:99.62Mb]],inversion BTRC NA ADARB2 NA Oncogene Oncogene NA NA NA -BTRC--ADARB2 BS_EZ3147MX -0.164985830636128 -0.156989288153003 NA NA no change no change NA NA 10:101462058 10:1242299 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr10:99.62Mb]],inversion BTRC NA ADARB2 NA Oncogene Oncogene NA NA NA -BTRC--LRRC20 BS_EZ3147MX -0.164985830636128 1.29594176012959 NA NA no change no change NA NA 10:101462058 10:70319317 ARRIBA frameshift 83 30 high [INTRACHROMOSOMAL[chr10:30.97Mb]],duplication/5'-5' BTRC NA LRRC20 NA Oncogene NA NA NA NA -BTRC--NPFFR1 BS_EZ3147MX -0.164985830636128 -0.737577498316832 NA NA no change no change NA NA 10:101462058 10:70252994 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr10:31.07Mb]],duplication/5'-5' BTRC NA NPFFR1 NA Oncogene NA NA NA NA -C12orf4--SOX5-AS1 BS_QKT3TJVK 4.75330311004504 NA NA NA differentially expressed NA NA NA 12:4534157 12:24227161 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr12:19.68Mb]],inversion C12orf4 NA SOX5-AS1 NA NA NA NA NA NA -C14orf2--OCA2 BS_JB43XBCQ -0.750710315967022 -0.356170098647518 NA NA no change no change NA NA 14:103913961 15:27986643 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr14--chr15]],translocation C14orf2 NA OCA2 NA NA NA NA NA NA -C14orf2--OCA2 BS_JB43XBCQ -0.750710315967022 -0.356170098647518 NA NA no change no change NA NA 14:103913961 15:27989666 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr14--chr15]],translocation C14orf2 NA OCA2 NA NA NA NA NA NA -C14orf2--OCA2 BS_JB43XBCQ -0.750710315967022 -0.356170098647518 NA NA no change no change NA NA 14:103913961 15:27990647 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr14--chr15]],translocation C14orf2 NA OCA2 NA NA NA NA NA NA -C19orf47--GPR108 BS_X4DD4KSZ 2.37144544756297 0.458058604929392 NA NA differentially expressed no change NA NA 19:40322028 19:6734307 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr19:33.58Mb]],deletion C19orf47 NA GPR108 NA NA NA NA NA NA -C19orf66--MARCH2 BS_BYCX6VK1 -0.356600631800248 0.164903340490329 NA NA no change no change NA NA 19:10087300 19:8438388 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr19:1.65Mb]],duplication C19orf66 NA MARCH2 NA NA NA NA NA NA -C1GALT1--AUTS2 BS_68KX6A42 1.74348537487988 0.376743638585233 NA NA no change no change NA NA 7:7182820 7:70595287 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr7:62.35Mb]],inversion/3'-3' C1GALT1 NA AUTS2 NA NA NA NA NA NA -C1orf61--C9orf3 BS_XGDPK33A 1.13738256826783 1.4472433080825 NA NA no change no change NA NA 1:156421555 9:95086682 ARRIBA other 4 0 medium [FA_CancerSupp,INTERCHROMOSOMAL[chr1--chr9]],translocation C1orf61 NA C9orf3 NA NA NA NA NA NA -C22orf39--IL17RA BS_8ZY4GST0 0.391704350258847 3.16637098320825 NA NA no change differentially expressed NA NA 22:19447378 22:17097062 STARFUSION in-frame 3 4 NA [INTRACHROMOSOMAL[chr22:2.24Mb]] C22orf39 NA IL17RA NA NA NA NA NA NA -C22orf39--IL17RA BS_8ZY4GST0 0.391704350258847 3.16637098320825 NA NA no change differentially expressed NA NA 22:19447378 22:17097062 ARRIBA in-frame 3 3 high [INTRACHROMOSOMAL[chr22:2.24Mb]],inversion C22orf39 NA IL17RA NA NA NA NA NA NA -C3orf67--RPSA(31157)/MOBP(23499) BS_S6Q7NKA3 6.57950522619205 2.6000132905384 NA -3.0998297791762 differentially expressed differentially expressed NA differentially expressed 3:59001741 3:39443699 ARRIBA other 1 2 medium [],deletion C3orf67 NA RPSA MOBP NA NA NA NA NA -C3orf70--RAB7A BS_GWSJ4Z9H 4.22733082282357 1.21085286674467 NA NA differentially expressed no change NA NA 3:185152628 3:128795360 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr3:56.26Mb]],inversion C3orf70 NA RAB7A NA NA TumorSuppressorGene NA NA NA -C4orf22--MTTP BS_W1385R8Y -0.315174225514855 6.31611209281164 NA NA no change differentially expressed NA NA 4:80928441 4:99594435 ARRIBA other 11 1 medium [INTRACHROMOSOMAL[chr4:18.60Mb]],deletion C4orf22 NA MTTP NA NA NA NA NA NA -C8orf33--RN7SL135P(72724)/AC011124.1(77204) BS_6M2053M0 2.89919559088289 NA NA NA differentially expressed NA NA NA 8:145055037 8:63307635 ARRIBA other 2 1 medium [],duplication C8orf33 NA RN7SL135P AC011124.1 NA NA NA NA NA -CACNA1E--GAS5 BS_FCDAH728 0.406398447216913 2.29690942243032 NA NA no change differentially expressed NA NA 1:181651441 1:173864075 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:7.54Mb]],inversion CACNA1E NA GAS5 NA NA TumorSuppressorGene, Oncogene NA NA NA -CACNA2D1--ELMO1(97454)/NECAP1P1(38797) BS_H97S5SQN 0.741712617111906 0.31478987270267 NA 1.96341291524239 no change no change NA no change 7:82335135 7:37546703 ARRIBA frameshift 6 1 high [],deletion CACNA2D1 NA ELMO1 NECAP1P1 NA Oncogene NA NA NA -CALCR--ANKRD33B BS_68KX6A42 -0.235955194496471 0.941383700338804 NA NA no change no change NA NA 7:93574289 5:10595885 ARRIBA other 3 2 high [INTERCHROMOSOMAL[chr7--chr5]],translocation/5'-5' CALCR NA ANKRD33B NA Oncogene NA NA NA NA -CALCRL--WDR75 BS_7WM3MNZ0 7.08580029472553 1.87515629005101 NA NA differentially expressed no change NA NA 2:187387666 2:189474717 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:1.99Mb]],inversion CALCRL NA WDR75 NA NA NA NA NA NA -CALCRL--WDR75 BS_7WM3MNZ0 7.08580029472553 1.87515629005101 NA NA differentially expressed no change NA NA 2:187431297 2:189448379 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:1.99Mb]],inversion CALCRL NA WDR75 NA NA NA NA NA NA -CALN1--WDR60 BS_68KX6A42 -1.29446674506907 0.592457956338058 NA NA no change no change NA NA 7:72378228 7:158911550 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:86.41Mb]],inversion CALN1 NA WDR60 NA NA NA NA NA NA -CAMKK2--C22orf24 BS_W1385R8Y -1.39350092901059 0.894229603196406 NA NA no change no change NA NA 12:121270898 22:31938115 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr12--chr22]],translocation CAMKK2 NA C22orf24 NA Kinase, Oncogene, Kinase NA NA NA NA -CAMKK2--YWHAH BS_W1385R8Y -1.39350092901059 -2.37770707831688 NA NA no change differentially expressed NA NA 12:121270898 22:31954747 ARRIBA frameshift 39 34 high [INTERCHROMOSOMAL[chr12--chr22]],translocation/5'-5' CAMKK2 NA YWHAH NA Kinase, Oncogene, Kinase NA NA NA NA -CAPRIN2--AC024255.1(142890)/AC012150.1(21621) BS_X0XXN9BK -0.290630718680011 NA NA NA no change NA NA NA 12:30719079 12:29121575 ARRIBA frameshift 3 0 high [],deletion CAPRIN2 NA AC024255.1 AC012150.1 NA NA NA NA NA -CAPRIN2--AC024255.1(93706)/AC012150.1(70805) BS_X0XXN9BK -0.290630718680011 NA NA NA no change NA NA NA 12:30719079 12:29072391 ARRIBA frameshift 2 0 medium [],deletion CAPRIN2 NA AC024255.1 AC012150.1 NA NA NA NA NA -CAPZA2--ABCB1 BS_68KX6A42 2.11186926611552 0.305712320673931 NA NA differentially expressed no change NA NA 7:116862650 7:87601078 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr7:29.10Mb]],inversion CAPZA2 NA ABCB1 NA NA Oncogene NA NA TCGAFusion -CAPZA2--MET BS_NGSG2KB6 1.82067430979368 4.20516791069619 NA NA no change differentially expressed NA NA 7:116888190 7:116699071 STARFUSION in-frame 42 22 NA [YOSHIHARA_TCGA,Klijn_CellLines,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[12684]] CAPZA2 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -CAPZA2--MET BS_NGSG2KB6 1.82067430979368 4.20516791069619 NA NA no change differentially expressed NA NA 7:116888190 7:116699071 ARRIBA in-frame 36 20 high [YOSHIHARA_TCGA,Klijn_CellLines,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[12684]],duplication CAPZA2 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -CAPZA2--MET BS_NGSG2KB6 1.82067430979368 4.20516791069619 NA NA no change differentially expressed NA NA 7:116862650 7:116699071 ARRIBA frameshift 1 3 medium [YOSHIHARA_TCGA,Klijn_CellLines,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[12684]],duplication CAPZA2 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -CAPZA2--MET BS_NGSG2KB6 1.82067430979368 4.20516791069619 NA NA no change differentially expressed NA NA 7:116888190 7:116731668 ARRIBA frameshift 2 2 medium [YOSHIHARA_TCGA,Klijn_CellLines,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[12684]],duplication CAPZA2 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -CAPZA2--PTPRN2 BS_NGSG2KB6 1.82067430979368 -0.751353766816113 NA NA no change no change NA NA 7:116862650 7:157898737 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr7:40.62Mb]],inversion CAPZA2 NA PTPRN2 NA NA NA NA NA NA -CAPZA2--RUNDC3B BS_68KX6A42 2.11186926611552 -1.61341928008211 NA NA differentially expressed no change NA NA 7:116862650 7:87723049 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:28.98Mb]],inversion/3'-3' CAPZA2 NA RUNDC3B NA NA NA NA NA NA -CAPZB--MINOS1 BS_NGSG2KB6 1.17573259233239 -1.00936416393044 NA NA no change no change NA NA 1:19484190 1:19626387 ARRIBA in-frame 1 0 low [CCLE,INTRACHROMOSOMAL[chr1:0.11Mb]],inversion CAPZB NA MINOS1 NA NA NA NA NA NA -CAPZB--TMC1 BS_W1385R8Y 1.12506505190391 2.85735447212496 NA NA no change differentially expressed NA NA 1:19485436 9:72688709 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr1--chr9]],translocation CAPZB NA TMC1 NA NA NA NA NA NA -CAPZB--TMC1 BS_W1385R8Y 1.12506505190391 2.85735447212496 NA NA no change differentially expressed NA NA 1:19484190 9:72688709 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr1--chr9]],translocation CAPZB NA TMC1 NA NA NA NA NA NA -CAPZB--TMC1 BS_W1385R8Y 1.12506505190391 2.85735447212496 NA NA no change differentially expressed NA NA 1:19485436 9:72694543 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr1--chr9]],translocation CAPZB NA TMC1 NA NA NA NA NA NA -CARS--BRSK2 BS_8ZY4GST0 -0.268689573886028 -0.407673324712974 NA NA no change no change NA NA 11:3057343 11:1436040 STARFUSION in-frame 7 0 NA [INTRACHROMOSOMAL[chr11:1.54Mb]] CARS NA BRSK2 NA CosmicCensus, Oncogene Kinase, Kinase NA NA NA -CARS--BRSK2 BS_8ZY4GST0 -0.268689573886028 -0.407673324712974 NA NA no change no change NA NA 11:3057343 11:1436040 ARRIBA in-frame 7 0 medium [INTRACHROMOSOMAL[chr11:1.54Mb]],inversion CARS NA BRSK2 NA CosmicCensus, Oncogene Kinase, Kinase NA NA NA -CAST--RHOBTB3 BS_W4H1D4Y6 3.53854728802071 1.86586776877936 NA NA differentially expressed no change NA NA 5:96702915 5:95783797 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.70Mb]],duplication CAST NA RHOBTB3 NA NA NA NA NA NA -CAST--RHOBTB3 BS_W4H1D4Y6 3.53854728802071 1.86586776877936 NA NA differentially expressed no change NA NA 5:96675601 5:95736889 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr5:0.70Mb]],duplication CAST NA RHOBTB3 NA NA NA NA NA NA -CBX4--ILF3 BS_8ZY4GST0 2.13604409105834 1.50489842678545 NA NA differentially expressed no change NA NA 17:79837837 19:10681993 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr17--chr19]],translocation CBX4 NA ILF3 NA Oncogene NA NA NA NA -CBX5--AC008083.1(17204)/AC008083.2(45389) BS_KBEX4RT2 5.50284108373895 NA NA NA differentially expressed NA NA NA 12:54280008 12:47296225 ARRIBA other 19 1 high [],inversion CBX5 NA AC008083.1 AC008083.2 TumorSuppressorGene NA NA NA NA -CC2D2A--LINC01182 BS_RX1YTZ7F 3.6081563699952 5.67435988154902 NA NA differentially expressed differentially expressed NA NA 4:15470057 4:13676130 ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr4:1.49Mb]],inversion/3'-3' CC2D2A NA LINC01182 NA NA NA NA NA NA -CCDC102B--PLEKHG4B BS_KBEX4RT2 1.07567101100386 4.71373884418349 NA NA no change differentially expressed NA NA 18:68734766 5:113251 ARRIBA other 2 0 high [INTERCHROMOSOMAL[chr18--chr5]],translocation CCDC102B NA PLEKHG4B NA NA NA NA NA NA -CCDC102B--PLEKHG4B BS_KBEX4RT2 1.07567101100386 4.71373884418349 NA NA no change differentially expressed NA NA 18:68798181 5:113251 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr18--chr5]],translocation CCDC102B NA PLEKHG4B NA NA NA NA NA NA -CCDC127--CNN3 BS_4PPHAQXF 2.12694149141287 3.42550167964589 NA NA differentially expressed differentially expressed NA NA 5:216729 1:94903524 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr5--chr1]],translocation CCDC127 NA CNN3 NA NA NA NA NA NA -CCDC127--CTNND2 BS_W4H1D4Y6 0.786395216028494 -2.81395566425319 NA NA no change differentially expressed NA NA 5:216729 5:11106940 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr5:10.75Mb]],inversion/5'-5' CCDC127 NA CTNND2 NA NA CosmicCensus, Oncogene NA NA NA -CCDC127--PTPRS BS_W4H1D4Y6 0.786395216028494 3.77742760462043 NA NA no change differentially expressed NA NA 5:216729 19:5182822 ARRIBA frameshift 4 4 high [INTERCHROMOSOMAL[chr5--chr19]],translocation/5'-5' CCDC127 NA PTPRS NA NA NA NA NA NA -CCDC134--MPPED1(6818)/EFCAB6-AS1(1441) BS_JGA9BP3A 1.76129247925481 -0.510448987823883 NA 16.4246237478824 no change no change NA differentially expressed 22:41813975 22:43514666 ARRIBA other 3 3 medium [],deletion CCDC134 NA MPPED1 EFCAB6-AS1 NA NA NA NA NA -CCDC136--RNA5SP250(7548)/AC104843.1(1574) BS_68KX6A42 -0.0236702768158832 NA NA NA no change NA NA NA 7:128810366 7:152600639 ARRIBA frameshift 7 2 high [],inversion CCDC136 NA RNA5SP250 AC104843.1 TumorSuppressorGene NA NA NA NA -CCDC144A--USP32 BS_ZQKGJD70 2.2317012721281 0.190519457743846 NA NA differentially expressed no change NA NA 17:16773634 17:60185653 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr17:43.40Mb]],inversion CCDC144A NA USP32 NA NA Oncogene NA NA NA -CCDC144CP--USP32 BS_H97S5SQN 2.98689835315071 0.608289840467946 NA NA differentially expressed no change NA NA 17:20402195 17:60185651 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr17:39.78Mb]],inversion CCDC144CP NA USP32 NA NA Oncogene NA NA NA -CCDC26--AC103718.1(23503)/MTRF1LP2(21562) BS_Z3RCA1T9 19.0360789399387 NA NA -0.0416847786721587 differentially expressed NA NA no change 8:129679928 8:129707182 ARRIBA other 26 5 high [],duplication CCDC26 NA AC103718.1 MTRF1LP2 NA NA NA NA NA -CCDC26--GSDMC BS_FCDAH728 14.2412952110951 4.11788067604379 NA NA differentially expressed differentially expressed NA NA 8:129679928 8:129760589 ARRIBA other 3 1 medium [CCLE,INTRACHROMOSOMAL[chr8:0.07Mb],LOCAL_REARRANGEMENT:-:[67957]],duplication CCDC26 NA GSDMC NA NA NA NA NA NA -CCDC26--GSDMC BS_FCDAH728 14.2412952110951 4.11788067604379 NA NA differentially expressed differentially expressed NA NA 8:129480643 8:129760589 ARRIBA other 1 1 medium [CCLE,INTRACHROMOSOMAL[chr8:0.07Mb],LOCAL_REARRANGEMENT:-:[67957]],duplication CCDC26 NA GSDMC NA NA NA NA NA NA -CCDC26--LINC00976(136388)/LINC00977(114078) BS_XGDPK33A 22.6485346197448 2.82041455744271 NA 21.6144233257713 differentially expressed differentially expressed NA differentially expressed 8:129679928 8:129102389 ARRIBA other 1 2 high [],deletion CCDC26 NA LINC00976 LINC00977 NA NA NA NA NA -CCDC26--LINC00976(136388)/LINC00977(114078) BS_Z3RCA1T9 19.0360789399387 -0.157777393761257 NA 8.32358765202241 differentially expressed no change NA differentially expressed 8:129679928 8:129102389 ARRIBA other 3 0 high [],deletion CCDC26 NA LINC00976 LINC00977 NA NA NA NA NA -CCDC50--FGF12 BS_QNNX91SM 4.89713897500463 2.05492713217893 NA NA differentially expressed differentially expressed NA NA 3:191329723 3:192335464 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr3:0.74Mb]],inversion CCDC50 NA FGF12 NA NA Oncogene NA NA NA -CD44--AC110058.1 BS_ZD5HN296 3.42782123518118 NA NA NA differentially expressed NA NA NA 11:35190065 11:29552360 STARFUSION other 89 32 NA [INTRACHROMOSOMAL[chr11:5.59Mb]] CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA -CD44--AC110058.1 BS_ZD5HN296 3.42782123518118 NA NA NA differentially expressed NA NA NA 11:35190065 11:29552360 ARRIBA frameshift 84 29 high [INTRACHROMOSOMAL[chr11:5.59Mb]],duplication CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA -CD44--AC110058.1 BS_ZD5HN296 3.42782123518118 NA NA NA differentially expressed NA NA NA 11:35189972 11:29552360 ARRIBA frameshift 1 7 medium [INTRACHROMOSOMAL[chr11:5.59Mb]],duplication CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA -CD44--AC124657.1(27989)/AL358944.1(54831) BS_ZD5HN296 3.42782123518118 NA NA NA differentially expressed NA NA NA 11:35190065 11:30112332 ARRIBA frameshift 6 0 medium [],duplication CD44 NA AC124657.1 AL358944.1 TumorSuppressorGene, Oncogene NA NA NA NA -CD44--WIZP1(5942)/MIR8054(7060) BS_ZD5HN296 3.42782123518118 44.4158678609757 NA NA differentially expressed differentially expressed NA NA 11:35190065 11:23412045 ARRIBA frameshift 41 14 high [],inversion CD44 NA WIZP1 MIR8054 TumorSuppressorGene, Oncogene NA NA NA NA -CD83--STMND1 BS_PXCPK5XS 0.349291502116864 4.30054314882629 NA NA no change differentially expressed NA NA 6:14118065 6:17114962 STARFUSION in-frame 13 3 NA [INTRACHROMOSOMAL[chr6:2.97Mb]] CD83 NA STMND1 NA NA NA NA NA NA -CD83--STMND1 BS_PXCPK5XS 0.349291502116864 4.30054314882629 NA NA no change differentially expressed NA NA 6:14118065 6:17114962 ARRIBA in-frame 13 3 high [INTRACHROMOSOMAL[chr6:2.97Mb]],deletion CD83 NA STMND1 NA NA NA NA NA NA -CDC16--CUL4A BS_H97S5SQN 2.52897902125842 3.0696012319757 NA NA differentially expressed differentially expressed NA NA 13:114265240 13:113266747 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr13:0.97Mb]],inversion/3'-3' CDC16 NA CUL4A NA NA NA NA NA NA -CDC42BPB--CDCA4 BS_F0JB4EAK -0.225985023373808 1.79349639688475 NA NA no change no change NA NA 14:103056999 14:105011935 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr14:1.95Mb]],duplication CDC42BPB NA CDCA4 NA Kinase NA NA NA NA -CDCA7--WDR91 BS_QNNX91SM 11.0581123292178 0.0416435630712568 NA NA differentially expressed no change NA NA 2:173367831 7:135209755 ARRIBA other 1 1 high [INTERCHROMOSOMAL[chr2--chr7]],translocation CDCA7 NA WDR91 NA NA NA NA NA NA -CDHR3--SLC26A4 BS_68KX6A42 1.58524433817356 3.49514897344647 NA NA no change differentially expressed NA NA 7:105880077 7:107672138 STARFUSION other 138 63 NA [INTRACHROMOSOMAL[chr7:1.63Mb]] CDHR3 NA SLC26A4 NA NA NA NA NA NA -CDHR3--SLC26A4 BS_68KX6A42 1.58524433817356 3.49514897344647 NA NA no change differentially expressed NA NA 7:105879745 7:107672138 STARFUSION other 76 63 NA [INTRACHROMOSOMAL[chr7:1.63Mb]] CDHR3 NA SLC26A4 NA NA NA NA NA NA -CDHR3--SLC26A4 BS_68KX6A42 1.58524433817356 3.49514897344647 NA NA no change differentially expressed NA NA 7:105880077 7:107672138 ARRIBA other 129 55 high [INTRACHROMOSOMAL[chr7:1.63Mb]],deletion CDHR3 NA SLC26A4 NA NA NA NA NA NA -CDK14--PTPRZ1 BS_4PPHAQXF 1.86615207545302 5.83257671729728 NA NA no change differentially expressed NA NA 7:90726812 7:121983665 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:30.66Mb]],deletion CDK14 NA PTPRZ1 NA Kinase NA NA NA NA -CDK14--PTPRZ1 BS_4PPHAQXF 1.86615207545302 5.83257671729728 NA NA no change differentially expressed NA NA 7:90899353 7:122059753 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:30.66Mb]],deletion CDK14 NA PTPRZ1 NA Kinase NA NA NA NA -CDK14--THSD7A BS_68KX6A42 0.265744891037305 3.69033745956168 NA NA no change differentially expressed NA NA 7:90726812 7:11719092 ARRIBA frameshift 19 9 high [INTRACHROMOSOMAL[chr7:78.63Mb]],duplication/5'-5' CDK14 NA THSD7A NA Kinase NA NA NA NA -CDK18--PHLDB1 BS_21ET39G7 1.29271841450185 -0.0982268822476745 NA NA no change no change NA NA 1:205526837 11:118656683 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr1--chr11]],translocation CDK18 NA PHLDB1 NA Oncogene, Kinase NA NA NA NA -CDK18--PHLDB1 BS_21ET39G7 1.29271841450185 -0.0982268822476745 NA NA no change no change NA NA 1:205504878 11:118655605 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr1--chr11]],translocation CDK18 NA PHLDB1 NA Oncogene, Kinase NA NA NA NA -CDK5R1--SOX9-AS1(70386)/LINC00511(15534) BS_BMMY0H73 -0.514598081688783 -0.252845476794842 NA 3.10784380084896 no change no change NA differentially expressed 17:32490245 17:72307589 ARRIBA other 4 2 medium [],deletion CDK5R1 NA SOX9-AS1 LINC00511 Oncogene NA NA NA NA -CDKAL1--RAB23(3403)/PRIM2(89088) BS_58YXHGAJ 4.82468033366335 1.45951325959124 NA 5.74771733944997 differentially expressed no change NA differentially expressed 6:20535394 6:57225717 ARRIBA other 5 0 high [],inversion CDKAL1 NA RAB23 PRIM2 NA NA NA NA NA -CDKN2A--FAM71BP1(58695)/AL353753.1(69546) BS_ZD5HN296 2.74127685954926 -0.050759979026114 NA NA differentially expressed no change NA NA 9:21994139 9:25997129 ARRIBA frameshift 3 0 high [],inversion CDKN2A NA FAM71BP1 AL353753.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -CDYL2--MRPS35P3(54317)/AC026884.1(69113) BS_BMMY0H73 -0.201503832115831 -0.0509773752806959 NA NA no change no change NA NA 16:80804150 10:58037310 ARRIBA frameshift 1 1 high [],translocation CDYL2 NA MRPS35P3 AC026884.1 NA NA NA NA NA -CENPK--AC091862.1 BS_W4H1D4Y6 10.7418038836728 NA NA NA differentially expressed NA NA NA 5:65521475 5:64413744 ARRIBA frameshift 5 3 high [INTRACHROMOSOMAL[chr5:1.03Mb]],deletion CENPK NA AC091862.1 NA NA NA NA NA NA -CENPV--AC020558.3(17528)/SMCR2(38753) BS_S6Q7NKA3 3.52663193043642 NA NA -1.04732995295035 differentially expressed NA NA no change 17:16343623 17:17635273 ARRIBA frameshift 4 1 medium [],inversion CENPV NA AC020558.3 SMCR2 NA NA NA NA NA -CEP85L--NUS1(83752)/SLC35F1(113134) BS_W4H1D4Y6 1.35409932082338 2.03489624826544 NA 2.28218694348244 no change differentially expressed NA differentially expressed 6:118664411 6:117794392 ARRIBA other 4 1 high [],inversion CEP85L NA NUS1 SLC35F1 NA NA NA NA NA -CEP85L--SLC35F1 BS_W4H1D4Y6 1.35409932082338 2.28218694348244 NA NA no change differentially expressed NA NA 6:118710036 6:118154445 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr6:0.14Mb]],inversion CEP85L NA SLC35F1 NA NA NA NA NA NA -CFAP69--GALNT17 BS_68KX6A42 -0.26300129091769 NA NA NA no change NA NA NA 7:90283056 7:71335550 ARRIBA in-frame 3 2 high [INTRACHROMOSOMAL[chr7:18.53Mb]],duplication CFAP69 NA GALNT17 NA NA NA NA NA NA -CFAP69--GALNT17 BS_68KX6A42 -0.26300129091769 NA NA NA no change NA NA NA 7:90255482 7:71335550 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:18.53Mb]],duplication CFAP69 NA GALNT17 NA NA NA NA NA NA -CHAF1A--CEP72 BS_W4H1D4Y6 4.12164278305437 0.555004883112813 NA NA differentially expressed no change NA NA 19:4442341 5:633769 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr19--chr5]],translocation CHAF1A NA CEP72 NA NA NA NA NA NA -CHCHD3--SNORA51(70999)/AC008155.2(38960) BS_JB43XBCQ 1.04008837861096 -0.263448158573777 NA NA no change no change NA NA 7:133070142 7:138259128 ARRIBA frameshift 3 1 high [],inversion CHCHD3 NA SNORA51 AC008155.2 TranscriptionFactor NA NA NA NA -CHD2--AC091078.1 BS_68KX6A42 1.72111281956675 NA NA NA no change NA NA NA 15:92901299 15:93496234 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr15:0.28Mb]],deletion CHD2 NA AC091078.1 NA CosmicCensus, Oncogene NA NA NA NA -CHD2--AC091078.1 BS_68KX6A42 1.72111281956675 NA NA NA no change NA NA NA 15:93004751 15:93496234 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr15:0.28Mb]],deletion CHD2 NA AC091078.1 NA CosmicCensus, Oncogene NA NA NA NA -CHD2--TBC1D2B BS_68KX6A42 1.72111281956675 2.16229705324577 NA NA no change differentially expressed NA NA 15:92924552 15:78054187 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr15:14.82Mb]],inversion CHD2 NA TBC1D2B NA CosmicCensus, Oncogene NA NA NA NA -CHD8--INF2 BS_F0JB4EAK 0.448339244404607 -0.241275891662814 NA NA no change no change NA NA 14:21433217 14:104714803 STARFUSION other 15 11 NA [INTRACHROMOSOMAL[chr14:83.23Mb]] CHD8 NA INF2 NA NA NA NA NA NA -CHD8--INF2 BS_F0JB4EAK 0.448339244404607 -0.241275891662814 NA NA no change no change NA NA 14:21456032 14:104718795 STARFUSION other 2 11 NA [INTRACHROMOSOMAL[chr14:83.23Mb]] CHD8 NA INF2 NA NA NA NA NA NA -CHD8--INF2 BS_F0JB4EAK 0.448339244404607 -0.241275891662814 NA NA no change no change NA NA 14:21433217 14:104714803 ARRIBA other 26 9 medium [INTRACHROMOSOMAL[chr14:83.23Mb]],inversion CHD8 NA INF2 NA NA NA NA NA NA -CHD8--INF2 BS_F0JB4EAK 0.448339244404607 -0.241275891662814 NA NA no change no change NA NA 14:21456032 14:104718795 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:83.23Mb]],inversion CHD8 NA INF2 NA NA NA NA NA NA -CHEK2--NF2 BS_JGA9BP3A 2.99010609664888 -0.0277482287379935 NA NA differentially expressed no change NA NA 22:28734403 22:29654657 ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr22:0.86Mb]],inversion CHEK2 NA NF2 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -CHEK2--NF2 BS_JGA9BP3A 2.99010609664888 -0.0277482287379935 NA NA differentially expressed no change NA NA 22:28741769 22:29654657 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr22:0.86Mb]],inversion CHEK2 NA NF2 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -CHFR--CHFR BS_685DACMS 0.387275840360831 0.387275840360831 NA NA no change no change NA NA 12:132945621 12:132945797 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing CHFR NA CHFR NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA -CHIC2--AC098868.1 BS_GWSJ4Z9H 5.84285882785366 NA NA NA differentially expressed NA NA NA 4:54048955 4:54440764 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr4:0.38Mb]],duplication CHIC2 NA AC098868.1 NA CosmicCensus, Oncogene NA NA NA NA -CHID1--TRIM44 BS_C83TK159 -0.123167801085143 -0.585268019342332 NA NA no change no change NA NA 11:883200 11:35685259 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:34.75Mb]],inversion CHID1 NA TRIM44 NA NA NA NA NA NA -CHST15--OAT BS_W4H1D4Y6 2.22409043039177 0.257471841013469 NA NA differentially expressed no change NA NA 10:124092324 10:124412200 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr10:0.30Mb]],duplication CHST15 NA OAT NA NA NA NA NA NA -CHST8--AC069208.1 BS_W4H1D4Y6 2.98002314705432 NA NA NA differentially expressed NA NA NA 19:33622296 12:24460776 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr19--chr12]],translocation CHST8 NA AC069208.1 NA NA NA NA NA NA -CHST8--SOX5 BS_W4H1D4Y6 2.98002314705432 4.4334777947147 NA NA differentially expressed differentially expressed NA NA 19:33622296 12:23559623 ARRIBA other 9 9 high [INTERCHROMOSOMAL[chr19--chr12]],translocation/5'-5' CHST8 NA SOX5 NA NA Oncogene, TranscriptionFactor NA NA NA -CHURC1-FNTB--TRMT5 BS_JB43XBCQ -0.686185423538818 2.88320157035944 NA NA no change differentially expressed NA NA 14:65044443 14:60975800 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr14:3.93Mb]],duplication/5'-5' CHURC1-FNTB NA TRMT5 NA NA NA NA NA NA -CINP--TDRD9 BS_F0JB4EAK -0.39181156711301 1.07218872322925 NA NA no change no change NA NA 14:102355768 14:104042069 STARFUSION in-frame 41 13 NA [INTRACHROMOSOMAL[chr14:1.57Mb]] CINP NA TDRD9 NA NA NA NA NA NA -CINP--TDRD9 BS_F0JB4EAK -0.39181156711301 1.07218872322925 NA NA no change no change NA NA 14:102355768 14:104042069 ARRIBA in-frame 34 10 high [INTRACHROMOSOMAL[chr14:1.57Mb]],inversion CINP NA TDRD9 NA NA NA NA NA NA -CLEC2L--VIPR2 BS_68KX6A42 -1.99083194692297 3.70981541182597 NA NA no change differentially expressed NA NA 7:139541500 7:159131140 ARRIBA frameshift 4 2 medium [INTRACHROMOSOMAL[chr7:19.48Mb]],deletion/5'-5' CLEC2L NA VIPR2 NA NA NA NA NA NA -CLN6--DAP BS_68KX6A42 1.87915952370676 1.3499716009603 NA NA no change no change NA NA 15:68218536 5:10683571 ARRIBA frameshift 6 3 high [INTERCHROMOSOMAL[chr15--chr5]],translocation CLN6 NA DAP NA NA NA NA NA NA -CLN6--DAP BS_68KX6A42 1.87915952370676 1.3499716009603 NA NA no change no change NA NA 15:68211263 5:10683571 ARRIBA in-frame 3 4 high [INTERCHROMOSOMAL[chr15--chr5]],translocation CLN6 NA DAP NA NA NA NA NA NA -CLN6--DAP BS_68KX6A42 1.87915952370676 1.3499716009603 NA NA no change no change NA NA 15:68218536 5:10748271 ARRIBA frameshift 1 3 high [INTERCHROMOSOMAL[chr15--chr5]],translocation CLN6 NA DAP NA NA NA NA NA NA -CLSTN2--PCDH9 BS_S6Q7NKA3 2.27186888202309 -3.5569246572954 NA NA differentially expressed differentially expressed NA NA 3:140176073 13:66305028 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr3--chr13]],translocation CLSTN2 NA PCDH9 NA NA TumorSuppressorGene NA NA NA -CLTCL1--T BS_JGA9BP3A -0.878187321214514 5.54296010320638 NA NA no change differentially expressed NA NA 22:19196266 6:166157871 ARRIBA frameshift 1 3 high [INTERCHROMOSOMAL[chr22--chr6]],translocation/5'-5' CLTCL1 NA T NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA -CLU--INS-IGF2 BS_4PWDGEB0 2.50006783547087 43.3765319043866 NA NA differentially expressed differentially expressed NA NA 8:27598122 11:2132170 STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr8--chr11]] CLU NA INS-IGF2 NA TumorSuppressorGene, Oncogene NA NA NA NA -CLUAP1--RBFOX1 BS_XZM79E42 -1.10260376368541 -2.03872588780421 NA NA no change differentially expressed NA NA 16:3515591 16:5880516 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr16:1.70Mb]],inversion/3'-3' CLUAP1 NA RBFOX1 NA NA NA NA NA NA -CNNM4--BHMT BS_X0XXN9BK 0.229549522060053 2.90466080504113 NA NA no change differentially expressed NA NA 2:96806148 5:79130931 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr2--chr5]],translocation/3'-3' CNNM4 NA BHMT NA Oncogene NA NA NA NA -CNOT4--AC211433.3(8003)/GTF2I(15780) BS_68KX6A42 1.74902104109697 NA NA 1.54567055776352 no change NA NA no change 7:135397760 7:74641887 ARRIBA other 3 3 medium [],inversion CNOT4 NA AC211433.3 GTF2I NA NA NA TranscriptionFactor NA -CNTNAP2--DYNC1I1 BS_68KX6A42 -1.32260466797957 -1.25091413030053 NA NA no change no change NA NA 7:147977989 7:96060391 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr7:50.01Mb]],inversion/3'-3' CNTNAP2 NA DYNC1I1 NA TumorSuppressorGene, CosmicCensus NA NA NA NA -COBL--PPP1R9A BS_68KX6A42 0.020568959819454 0.850648646028511 NA NA no change no change NA NA 7:51085166 7:94909898 ARRIBA frameshift 2 2 high [INTRACHROMOSOMAL[chr7:43.59Mb]],inversion COBL NA PPP1R9A NA NA NA NA NA NA -COBL--PPP1R9A BS_68KX6A42 0.020568959819454 0.850648646028511 NA NA no change no change NA NA 7:51085166 7:95111259 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:43.59Mb]],inversion COBL NA PPP1R9A NA NA NA NA NA NA -COBL--PPP1R9A BS_68KX6A42 0.020568959819454 0.850648646028511 NA NA no change no change NA NA 7:51085166 7:95120712 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr7:43.59Mb]],inversion COBL NA PPP1R9A NA NA NA NA NA NA -COG2--TMEM78(6269)/AL162595.1(202) BS_ZQ76ZBEX 0.567009694696429 0.191305592017959 NA NA no change no change NA NA 1:230660823 1:229258079 ARRIBA frameshift 2 1 high [],duplication COG2 NA TMEM78 AL162595.1 NA NA NA NA NA -COL27A1--COL27A1 BS_RX1YTZ7F -0.303881426314796 -0.303881426314796 NA NA no change no change NA NA 9:114258594 9:114194404 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.16Mb]],duplication/non-canonical_splicing COL27A1 NA COL27A1 NA NA NA NA NA NA -COPA--GPATCH4 BS_BMMY0H73 1.98923247983288 1.46017369525855 NA NA no change no change NA NA 1:160339909 1:156596131 STARFUSION frameshift 12 7 NA [INTRACHROMOSOMAL[chr1:3.69Mb]] COPA NA GPATCH4 NA NA NA NA NA NA -COPA--GPATCH4 BS_BMMY0H73 1.98923247983288 1.46017369525855 NA NA no change no change NA NA 1:160339909 1:156596478 STARFUSION in-frame 10 7 NA [INTRACHROMOSOMAL[chr1:3.69Mb]] COPA NA GPATCH4 NA NA NA NA NA NA -COPA--GPATCH4 BS_BMMY0H73 1.98923247983288 1.46017369525855 NA NA no change no change NA NA 1:160339909 1:156596131 ARRIBA frameshift 11 5 high [INTRACHROMOSOMAL[chr1:3.69Mb]],deletion COPA NA GPATCH4 NA NA NA NA NA NA -COPA--GPATCH4 BS_BMMY0H73 1.98923247983288 1.46017369525855 NA NA no change no change NA NA 1:160339909 1:156596478 ARRIBA in-frame 9 6 high [INTRACHROMOSOMAL[chr1:3.69Mb]],deletion COPA NA GPATCH4 NA NA NA NA NA NA -COPA--GPATCH4 BS_BMMY0H73 1.98923247983288 1.46017369525855 NA NA no change no change NA NA 1:160336635 1:156597744 ARRIBA other 6 11 medium [INTRACHROMOSOMAL[chr1:3.69Mb]],deletion COPA NA GPATCH4 NA NA NA NA NA NA -COPG2--IMMP2L BS_68KX6A42 1.49492544867106 3.01004673687625 NA NA no change differentially expressed NA NA 7:130612152 7:111487341 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:18.94Mb]],deletion COPG2 NA IMMP2L NA NA NA NA NA NA -COPS7B--CLASP2 BS_58YXHGAJ 1.06583380472881 1.15290913397695 NA NA no change no change NA NA 2:231781883 3:33517174 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr2--chr3]],translocation COPS7B NA CLASP2 NA NA NA NA NA NA -CPSF7--MS4A7 BS_21ET39G7 0.0106374372350145 4.69097875091095 NA NA no change differentially expressed NA NA 11:61421390 11:60394946 ARRIBA in-frame 5 1 medium [INTRACHROMOSOMAL[chr11:1.01Mb]],inversion CPSF7 NA MS4A7 NA NA NA NA NA NA -CPSF7--MS4A7 BS_21ET39G7 0.0106374372350145 4.69097875091095 NA NA no change differentially expressed NA NA 11:61421390 11:60392685 ARRIBA in-frame 2 2 medium [INTRACHROMOSOMAL[chr11:1.01Mb]],inversion CPSF7 NA MS4A7 NA NA NA NA NA NA -CPSF7--MS4A7 BS_21ET39G7 0.0106374372350145 4.69097875091095 NA NA no change differentially expressed NA NA 11:61421390 11:60393787 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr11:1.01Mb]],inversion CPSF7 NA MS4A7 NA NA NA NA NA NA -CR381572.2(4061)/CR381572.1(16466)--MYO18B BS_JGA9BP3A NA 8.38839130755515 NA NA NA differentially expressed NA NA 21:8684995 22:25946137 ARRIBA other 37 3 high [],translocation CR381572.2 CR381572.1 MYO18B NA NA TumorSuppressorGene NA NA NA -CR381653.1--AL163540.1(55104)/U6(23170) BS_EZ3147MX NA NA NA NA NA NA NA NA 21:9327298 9:64059259 ARRIBA other 3 0 medium [],translocation CR381653.1 NA AL163540.1 U6 NA NA NA NA NA -CRAMP1--B4GALNT1 BS_QKT3TJVK NA 2.65786055190898 NA NA NA differentially expressed NA NA 16:1626166 12:57632133 ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr16--chr12]],translocation CRAMP1 NA B4GALNT1 NA NA NA NA NA NA -CREB1--MAP2 BS_BMMY0H73 2.61980118383008 0.180994582293787 NA NA differentially expressed no change NA NA 2:207530134 2:209653142 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:1.82Mb]],deletion CREB1 NA MAP2 NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene NA NA NA -CREB3L2--NXPH1(112684)/AC009500.1(73140) BS_68KX6A42 3.18141649602605 3.58864176635001 NA NA differentially expressed differentially expressed NA NA 7:138001604 7:8865647 ARRIBA frameshift 38 6 high [],inversion CREB3L2 NA NXPH1 AC009500.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -CRIP2--TRAV41 BS_F0JB4EAK -0.524861968906446 0.69591399968298 NA NA no change no change NA NA 14:105479828 14:22320532 STARFUSION other 5 5 NA [INTRACHROMOSOMAL[chr14:83.15Mb]] CRIP2 NA TRAV41 NA Oncogene NA NA NA NA -CRIP2--TRAV41 BS_F0JB4EAK -0.524861968906446 0.69591399968298 NA NA no change no change NA NA 14:105479828 14:22320532 ARRIBA frameshift 4 5 medium [INTRACHROMOSOMAL[chr14:83.15Mb]],duplication CRIP2 NA TRAV41 NA Oncogene NA NA NA NA -CRIP2--TRAV41(2040)/AC244502.2(10191) BS_F0JB4EAK -0.524861968906446 0.69591399968298 NA NA no change no change NA NA 14:105479493 14:22322731 ARRIBA frameshift 2 1 medium [],duplication CRIP2 NA TRAV41 AC244502.2 Oncogene NA NA NA NA -CRYBB1--NUP50-AS1 BS_GWSJ4Z9H 2.07238732749372 -0.49532651994505 NA NA differentially expressed no change NA NA 22:26607822 22:45163667 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr22:18.51Mb]],inversion/5'-5' CRYBB1 NA NUP50-AS1 NA NA NA NA NA NA -CSMD1--BX547991.1 BS_H97S5SQN 0.264149379464527 NA NA NA no change NA NA NA 8:4994332 10:47590319 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr8--chr10]],translocation CSMD1 NA BX547991.1 NA TumorSuppressorGene NA NA NA NA -CSNK1D--CPSF6 BS_T3DGY9J9 0.966429890806851 0.821756667600636 NA NA no change no change NA NA 17:82255429 12:69269512 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr17--chr12]],translocation CSNK1D NA CPSF6 NA Kinase NA NA NA NA -CSTF3--AL035078.1 BS_ZD5HN296 -0.652911127972316 NA NA NA no change NA NA NA 11:33096827 11:32036069 ARRIBA frameshift 4 0 low [INTRACHROMOSOMAL[chr11:1.04Mb]],deletion CSTF3 NA AL035078.1 NA NA NA NA NA NA -CSTF3--RCN1 BS_ZD5HN296 -0.652911127972316 2.03768264918596 NA NA no change differentially expressed NA NA 11:33096835 11:32029277 ARRIBA frameshift 1 4 high [INTRACHROMOSOMAL[chr11:0.97Mb]],deletion/5'-5' CSTF3 NA RCN1 NA NA NA NA NA NA -CTNNA1--AL390334.1(45304)/BNIP3P1(373800) BS_KBEX4RT2 2.07537443551329 NA NA 5.5628314942792 differentially expressed NA NA differentially expressed 5:138723625 14:27890590 ARRIBA other 3 0 high [],translocation CTNNA1 NA AL390334.1 BNIP3P1 Oncogene NA NA NA NA -CTNNA3--TYSND1 BS_49CJNZ06 -1.01165264918055 -0.295143484653776 NA NA no change no change NA NA 10:67147170 10:70143870 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:2.44Mb]],duplication CTNNA3 NA TYSND1 NA TumorSuppressorGene NA NA NA NA -CTNNB1--CNN3 BS_W7MFJZ5A 1.89543597004411 3.03216416632168 NA NA no change differentially expressed NA NA 3:41199670 1:94903524 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr3--chr1]],translocation CTNNB1 NA CNN3 NA CosmicCensus, Oncogene NA NA NA NA -CTNND1--RTN4RL2 BS_2JP7RBMB 1.2582773528702 0.150489959327463 NA NA no change no change NA NA 11:57809466 11:57476162 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr11:0.28Mb]],duplication CTNND1 NA RTN4RL2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -CTNND2--DAP BS_R9B92M75 1.1100457408566 0.923950076251302 NA NA no change no change NA NA 5:11732136 5:10748271 ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr5:0.21Mb]],deletion CTNND2 NA DAP NA CosmicCensus, Oncogene NA NA NA TCGAFusion -CTNND2--EXOC3 BS_W4H1D4Y6 -2.81395566425319 -0.10763096993163 NA NA differentially expressed no change NA NA 5:11236691 5:453370 STARFUSION frameshift 5 4 NA [INTRACHROMOSOMAL[chr5:10.50Mb]] CTNND2 NA EXOC3 NA CosmicCensus, Oncogene NA NA NA NA -CTNND2--EXOC3 BS_W4H1D4Y6 -2.81395566425319 -0.10763096993163 NA NA differentially expressed no change NA NA 5:11236691 5:453370 ARRIBA frameshift 5 4 high [INTRACHROMOSOMAL[chr5:10.50Mb]],inversion CTNND2 NA EXOC3 NA CosmicCensus, Oncogene NA NA NA NA -CTNND2--EXOC3 BS_W4H1D4Y6 -2.81395566425319 -0.10763096993163 NA NA differentially expressed no change NA NA 5:11236722 5:448621 ARRIBA frameshift 10 5 medium [INTRACHROMOSOMAL[chr5:10.50Mb]],inversion CTNND2 NA EXOC3 NA CosmicCensus, Oncogene NA NA NA NA -CTNND2--LINC02223 BS_W4H1D4Y6 -2.81395566425319 NA NA NA differentially expressed NA NA NA 5:11236691 5:17926824 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr5:5.78Mb]],inversion CTNND2 NA LINC02223 NA CosmicCensus, Oncogene NA NA NA NA -CTNND2--PTPRS BS_W4H1D4Y6 -2.81395566425319 3.77742760462043 NA NA differentially expressed differentially expressed NA NA 5:11110898 19:5188468 ARRIBA frameshift 8 2 medium [INTERCHROMOSOMAL[chr5--chr19]],translocation CTNND2 NA PTPRS NA CosmicCensus, Oncogene NA NA NA NA -CTTNBP2--AC022202.1 BS_68KX6A42 1.33400324864622 NA NA NA no change NA NA NA 7:117861209 7:64425707 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:53.28Mb]],deletion CTTNBP2 NA AC022202.1 NA NA NA NA NA NA -CU104787.1--U2(16630)/CU459211.1(186475) BS_EZ3147MX NA -0.58968983079934 NA 44.8596776971917 NA no change NA differentially expressed 22:11068174 22:10752913 ARRIBA other 11 0 medium [],inversion CU104787.1 NA U2 CU459211.1 NA NA NA NA NA -CUX1--AC073136.1 BS_68KX6A42 0.455056710978962 NA NA NA no change NA NA NA 7:101816093 7:56293423 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr7:45.52Mb]],inversion/3'-3' CUX1 NA AC073136.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -CUX1--AC073136.1(1998)/AC073136.2(11255) BS_68KX6A42 0.455056710978962 NA NA NA no change NA NA NA 7:101816093 7:56293423 ARRIBA frameshift 35 3 high [],inversion CUX1 NA AC073136.1 AC073136.2 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -CUX1--NUPR2(9702)/AC006970.1(37043) BS_68KX6A42 0.455056710978962 NA NA NA no change NA NA NA 7:101816093 7:56126102 ARRIBA frameshift 6 1 high [],inversion CUX1 NA NUPR2 AC006970.1 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -CXXC5--TMBIM6 BS_W4H1D4Y6 1.63972948988479 2.36023656346926 NA NA no change differentially expressed NA NA 5:139648845 12:49755635 ARRIBA other 4 1 medium [INTERCHROMOSOMAL[chr5--chr12]],translocation CXXC5 NA TMBIM6 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA -CXXC5--TMBIM6 BS_W4H1D4Y6 1.63972948988479 2.36023656346926 NA NA no change differentially expressed NA NA 5:139649009 12:49755635 ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr5--chr12]],translocation CXXC5 NA TMBIM6 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA -CYP51A1--DFNA5 BS_68KX6A42 1.41627893769154 2.58830606157314 NA NA no change differentially expressed NA NA 7:92134666 7:24702833 STARFUSION other 32 11 NA [INTRACHROMOSOMAL[chr7:67.35Mb]] CYP51A1 NA DFNA5 NA NA TumorSuppressorGene NA NA NA -CYP51A1--DFNA5 BS_68KX6A42 1.41627893769154 2.58830606157314 NA NA no change differentially expressed NA NA 7:92134666 7:24702833 ARRIBA other 31 11 high [INTRACHROMOSOMAL[chr7:67.35Mb]],deletion CYP51A1 NA DFNA5 NA NA TumorSuppressorGene NA NA NA -CYYR1--APP BS_W4H1D4Y6 4.63071975465881 2.65842051075724 NA NA differentially expressed differentially expressed NA NA 21:26480272 21:26053348 ARRIBA in-frame 1 0 low [GTEx,INTRACHROMOSOMAL[chr21:0.30Mb]],deletion CYYR1 NA APP NA NA NA NA NA NA -CYYR1--APP BS_W4H1D4Y6 4.63071975465881 2.65842051075724 NA NA differentially expressed differentially expressed NA NA 21:26572868 21:26090072 ARRIBA frameshift 1 0 low [GTEx,INTRACHROMOSOMAL[chr21:0.30Mb]],deletion CYYR1 NA APP NA NA NA NA NA NA -CYYR1--APP BS_X4DD4KSZ 2.28321872632708 0.520463943146955 NA NA differentially expressed no change NA NA 21:26566266 21:25911962 ARRIBA frameshift 1 0 low [GTEx,INTRACHROMOSOMAL[chr21:0.30Mb]],deletion CYYR1 NA APP NA NA NA NA NA NA -CYYR1--APP BS_X4DD4KSZ 2.28321872632708 0.520463943146955 NA NA differentially expressed no change NA NA 21:26566266 21:26000182 ARRIBA frameshift 1 0 low [GTEx,INTRACHROMOSOMAL[chr21:0.30Mb]],deletion CYYR1 NA APP NA NA NA NA NA NA -DAGLB--AC009276.1(39387)/TUBB3P2(7521) BS_68KX6A42 0.835402785577994 NA NA 3.03556844865506 no change NA NA differentially expressed 7:6424752 7:134727377 ARRIBA frameshift 3 0 medium [],duplication DAGLB NA AC009276.1 TUBB3P2 NA NA NA NA NA -DAGLB--TUBB3P2(8119)/CALD1(1004) BS_68KX6A42 0.835402785577994 3.03556844865506 NA 3.38980423838851 no change differentially expressed NA differentially expressed 7:6424752 7:134743248 ARRIBA frameshift 3 3 high [],duplication DAGLB NA TUBB3P2 CALD1 NA NA NA NA NA -DANCR--SCFD2 BS_NGSG2KB6 3.14756495084733 4.76792610483625 NA NA differentially expressed differentially expressed NA NA 4:52714238 4:52920870 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.15Mb]],inversion DANCR NA SCFD2 NA NA NA NA NA NA -DAP--AF212831.1(99833)/NEK4P1(236945) BS_W4H1D4Y6 3.42659279549067 NA NA -0.0579049332375458 differentially expressed NA NA no change 5:10748175 21:16973524 ARRIBA frameshift 3 0 medium [],translocation DAP NA AF212831.1 NEK4P1 NA NA NA NA NA -DAP--CTNND2 BS_R9B92M75 0.923950076251302 1.1100457408566 NA NA no change no change NA NA 5:10748175 5:11236823 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr5:0.21Mb]],duplication DAP NA CTNND2 NA NA CosmicCensus, Oncogene NA NA TCGAFusion -DAPK1--ECM2 BS_JQVAWTTM 0.788983448585186 4.8208373809366 NA NA no change differentially expressed NA NA 9:87499139 9:92517875 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:4.78Mb]],inversion DAPK1 NA ECM2 NA Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA NA -DBNL--AC009542.2 BS_68KX6A42 2.70198050396378 1.00718572857808 NA NA differentially expressed no change NA NA 7:44056903 7:135313714 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr7:91.18Mb]],deletion/5'-5' DBNL NA AC009542.2 NA NA NA NA NA NA -DBNL--CDHR3 BS_68KX6A42 2.70198050396378 1.58524433817356 NA NA differentially expressed no change NA NA 7:44060912 7:105879648 STARFUSION other 46 12 NA [INTRACHROMOSOMAL[chr7:61.81Mb]] DBNL NA CDHR3 NA NA NA NA NA NA -DBNL--CDHR3 BS_68KX6A42 2.70198050396378 1.58524433817356 NA NA differentially expressed no change NA NA 7:44060829 7:105879648 STARFUSION other 19 12 NA [INTRACHROMOSOMAL[chr7:61.81Mb]] DBNL NA CDHR3 NA NA NA NA NA NA -DBNL--CDHR3 BS_68KX6A42 2.70198050396378 1.58524433817356 NA NA differentially expressed no change NA NA 7:44062021 7:105879645 STARFUSION other 7 12 NA [INTRACHROMOSOMAL[chr7:61.81Mb]] DBNL NA CDHR3 NA NA NA NA NA NA -DBNL--CDHR3 BS_68KX6A42 2.70198050396378 1.58524433817356 NA NA differentially expressed no change NA NA 7:44062197 7:105878664 ARRIBA other 237 79 high [INTRACHROMOSOMAL[chr7:61.81Mb]],deletion DBNL NA CDHR3 NA NA NA NA NA NA -DBNL--CDHR3 BS_68KX6A42 2.70198050396378 1.58524433817356 NA NA differentially expressed no change NA NA 7:44060153 7:105879645 ARRIBA frameshift 6 5 medium [INTRACHROMOSOMAL[chr7:61.81Mb]],deletion DBNL NA CDHR3 NA NA NA NA NA NA -DBNL--DGKB BS_68KX6A42 2.70198050396378 -0.559376118430487 NA NA differentially expressed no change NA NA 7:44050280 7:14149238 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr7:29.07Mb]],inversion DBNL NA DGKB NA NA Kinase NA NA NA -DBNL--SLC26A4 BS_68KX6A42 2.70198050396378 3.49514897344647 NA NA differentially expressed differentially expressed NA NA 7:44059658 7:107672138 STARFUSION frameshift 46 53 NA [INTRACHROMOSOMAL[chr7:63.59Mb]] DBNL NA SLC26A4 NA NA NA NA NA NA -DBNL--SLC26A4 BS_68KX6A42 2.70198050396378 3.49514897344647 NA NA differentially expressed differentially expressed NA NA 7:44060912 7:107672138 ARRIBA frameshift 39 47 high [INTRACHROMOSOMAL[chr7:63.59Mb]],deletion DBNL NA SLC26A4 NA NA NA NA NA NA -DBNL--SLC26A4 BS_68KX6A42 2.70198050396378 3.49514897344647 NA NA differentially expressed differentially expressed NA NA 7:44060153 7:107672138 ARRIBA in-frame 33 27 high [INTRACHROMOSOMAL[chr7:63.59Mb]],deletion DBNL NA SLC26A4 NA NA NA NA NA NA -DBNL--SLC26A4 BS_68KX6A42 2.70198050396378 3.49514897344647 NA NA differentially expressed differentially expressed NA NA 7:44059658 7:107672138 ARRIBA frameshift 41 13 high [INTRACHROMOSOMAL[chr7:63.59Mb]],deletion DBNL NA SLC26A4 NA NA NA NA NA NA -DBNL--SLC26A4 BS_68KX6A42 2.70198050396378 3.49514897344647 NA NA differentially expressed differentially expressed NA NA 7:44058480 7:107683202 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr7:63.59Mb]],deletion DBNL NA SLC26A4 NA NA NA NA NA NA -DBNL--SLC26A4 BS_68KX6A42 2.70198050396378 3.49514897344647 NA NA differentially expressed differentially expressed NA NA 7:44058983 7:107672138 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr7:63.59Mb]],deletion DBNL NA SLC26A4 NA NA NA NA NA NA -DBNL--SLC26A4 BS_68KX6A42 2.70198050396378 3.49514897344647 NA NA differentially expressed differentially expressed NA NA 7:44050280 7:107683455 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:63.59Mb]],deletion DBNL NA SLC26A4 NA NA NA NA NA NA -DBX2--DCTN2 BS_5VPM0F36 4.1392615663892 0.634101217519831 NA NA differentially expressed no change NA NA 12:45050525 12:57535845 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr12:12.48Mb]],duplication DBX2 NA DCTN2 NA TranscriptionFactor NA NA NA NA -DCAF13--CPA6 BS_X0XXN9BK 2.98392653673836 7.8664824694506 NA NA differentially expressed differentially expressed NA NA 8:103426145 8:67692321 ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr8:35.67Mb]],inversion DCAF13 NA CPA6 NA NA NA NA NA NA -DCAF13--CPA6 BS_X0XXN9BK 2.98392653673836 7.8664824694506 NA NA differentially expressed differentially expressed NA NA 8:103426145 8:67624251 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:35.67Mb]],inversion DCAF13 NA CPA6 NA NA NA NA NA NA -DCAF4L2(96863)/AC037450.1(3234)--AF121898.1 BS_XGDPK33A 56.3710603602729 NA NA NA differentially expressed NA NA NA 8:87970931 8:87542489 ARRIBA other 4 1 high [],deletion DCAF4L2 AC037450.1 AF121898.1 NA NA NA NA NA NA -DCAF8L2--PRDX4 BS_KBEX4RT2 9.07464210929169 4.17842544611019 NA NA differentially expressed differentially expressed NA NA X:27632000 X:23671529 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chrX:3.90Mb]],duplication DCAF8L2 NA PRDX4 NA NA NA NA NA NA -DCHS1--AC107973.1 BS_ZD5HN296 1.43596511774235 NA NA NA no change NA NA NA 11:6639817 11:29881482 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr11:23.06Mb]],inversion DCHS1 NA AC107973.1 NA NA NA NA NA NA -DCLK2--CDH11 BS_SNVM7CZT 4.04919824847623 3.53901917537939 NA NA differentially expressed differentially expressed NA NA 4:150221785 16:64991935 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation DCLK2 NA CDH11 NA Kinase, Kinase TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -DDHD1--WWC1 BS_KBEX4RT2 0.573430442337945 0.205993556221446 NA NA no change no change NA NA 14:53152261 5:168428033 STARFUSION in-frame 12 5 NA [INTERCHROMOSOMAL[chr14--chr5]] DDHD1 NA WWC1 NA NA NA NA NA NA -DDHD1--WWC1 BS_KBEX4RT2 0.573430442337945 0.205993556221446 NA NA no change no change NA NA 14:53152261 5:168423533 STARFUSION frameshift 5 5 NA [INTERCHROMOSOMAL[chr14--chr5]] DDHD1 NA WWC1 NA NA NA NA NA NA -DDHD1--WWC1 BS_KBEX4RT2 0.573430442337945 0.205993556221446 NA NA no change no change NA NA 14:53152261 5:168428033 ARRIBA in-frame 12 5 high [INTERCHROMOSOMAL[chr14--chr5]],translocation DDHD1 NA WWC1 NA NA NA NA NA NA -DDHD1--WWC1 BS_KBEX4RT2 0.573430442337945 0.205993556221446 NA NA no change no change NA NA 14:53152261 5:168423533 ARRIBA frameshift 5 5 high [INTERCHROMOSOMAL[chr14--chr5]],translocation DDHD1 NA WWC1 NA NA NA NA NA NA -DDR1--MRPS18B BS_W4H1D4Y6 3.3596116002424 1.84292260905199 NA NA differentially expressed no change NA NA 6:30889430 6:30624883 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr6:0.25Mb]],duplication DDR1 NA MRPS18B NA Kinase, Oncogene, Kinase NA NA NA NA -DDR2--EFNA1 BS_BMMY0H73 4.00519703160775 2.36134771610556 NA NA differentially expressed differentially expressed NA NA 1:162719145 1:155131339 STARFUSION frameshift 9 1 NA [INTRACHROMOSOMAL[chr1:7.50Mb]] DDR2 NA EFNA1 NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA NA -DDR2--EFNA1 BS_BMMY0H73 4.00519703160775 2.36134771610556 NA NA differentially expressed differentially expressed NA NA 1:162719145 1:155131339 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr1:7.50Mb]],duplication DDR2 NA EFNA1 NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA NA -DDTL--AP000350.2(2381)/AP000350.1(8043) BS_GWSJ4Z9H 1.34297743714198 NA NA NA no change NA NA NA 22:23972219 22:23931955 ARRIBA other 4 0 low [],inversion DDTL NA AP000350.2 AP000350.1 NA NA NA NA NA -DDX3X--RIOK3 BS_R7NTZR4C 1.46583401373688 1.39526496780677 NA NA no change no change NA NA X:41337465 18:23479317 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chrX--chr18]],translocation DDX3X NA RIOK3 NA TumorSuppressorGene, CosmicCensus Kinase NA NA NA -DDX58--GLDC BS_W7MFJZ5A 1.8686701422294 6.82971797211736 NA NA no change differentially expressed NA NA 9:32526061 9:6558684 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:25.81Mb]],deletion DDX58 NA GLDC NA TumorSuppressorGene NA NA NA NA -DENND1B--LIX1L BS_BMMY0H73 4.66445441493005 7.6148446419559 NA NA differentially expressed differentially expressed NA NA 1:197715031 1:145942853 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:51.55Mb]],deletion DENND1B NA LIX1L NA NA NA NA NA NA -DENND1B--NEK7 BS_NGSG2KB6 0.932780560563454 2.31659579989082 NA NA no change differentially expressed NA NA 1:197772868 1:198262575 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.38Mb]],inversion DENND1B NA NEK7 NA NA Kinase, Kinase NA NA NA -DENND4C--CNTLN BS_PXCPK5XS 1.30733214495278 2.95595649961561 NA NA no change differentially expressed NA NA 9:19336414 9:17332686 ARRIBA frameshift 18 9 high [INTRACHROMOSOMAL[chr9:1.73Mb]],inversion/3'-3' DENND4C NA CNTLN NA NA NA NA NA NA -DENND5A--AC068205.2 BS_ZD5HN296 1.22867640937194 NA NA NA no change NA NA NA 11:9264961 11:43679338 ARRIBA frameshift 8 6 high [INTRACHROMOSOMAL[chr11:34.38Mb]],duplication/5'-5' DENND5A NA AC068205.2 NA NA NA NA NA NA -DENND5B--KRAS BS_QKT3TJVK 5.30735164399111 6.8053261593639 NA NA differentially expressed differentially expressed NA NA 12:31460194 12:25209911 STARFUSION in-frame 34 11 NA [INTRACHROMOSOMAL[chr12:6.13Mb]] DENND5B NA KRAS NA NA CosmicCensus, Oncogene NA NA NA -DENND5B--KRAS BS_QKT3TJVK 5.30735164399111 6.8053261593639 NA NA differentially expressed differentially expressed NA NA 12:31460194 12:25209911 ARRIBA in-frame 33 10 high [INTRACHROMOSOMAL[chr12:6.13Mb]],deletion DENND5B NA KRAS NA NA CosmicCensus, Oncogene NA NA NA -DEXI--AC133065.3(3751)/AC133065.1(19619) BS_XZM79E42 0.218049594941073 NA NA NA no change NA NA NA 16:10929217 16:10845295 ARRIBA other 2 1 medium [],inversion DEXI NA AC133065.3 AC133065.1 NA NA NA NA NA -DGKB--CALM1P2(77712)/AC073347.1(4348) BS_68KX6A42 -0.559376118430487 -0.117069205189829 NA NA no change no change NA NA 7:14841194 7:55337968 ARRIBA frameshift 5 0 high [],inversion DGKB NA CALM1P2 AC073347.1 Kinase NA NA NA NA -DHX32--AC021035.1(69653)/RPS6P15(76435) BS_XZM79E42 3.12825628095755 NA NA NA differentially expressed NA NA NA 10:125880543 10:111421756 ARRIBA frameshift 2 2 high [],deletion DHX32 NA AC021035.1 RPS6P15 NA NA NA NA NA -DHX32--RPS6P15(2735)/GPAM(648188) BS_XZM79E42 3.12825628095755 NA NA -1.11573426930272 differentially expressed NA NA no change 10:125880543 10:111501676 ARRIBA frameshift 39 5 high [],deletion DHX32 NA RPS6P15 GPAM NA NA NA NA NA -DIP2A--DUX4L2(26082)/DUX4(55413) BS_X0XXN9BK 0.228721585818245 NA NA 0.291606954499814 no change NA NA no change 21:46545961 4:190118361 ARRIBA frameshift 4 0 medium [],translocation DIP2A NA DUX4L2 DUX4 NA NA NA Oncogene, TranscriptionFactor NA -DLC1--TMEM64 BS_QNNX91SM -0.436760972938451 2.24203682239972 NA NA no change differentially expressed NA NA 8:13276262 8:90687361 ARRIBA frameshift 2 3 high [INTRACHROMOSOMAL[chr8:77.02Mb]],inversion/5'-5' DLC1 NA TMEM64 NA TumorSuppressorGene, Oncogene NA NA NA NA -DNAAF2--AL356022.1(144220)/LINC02302(80424) BS_QNNX91SM 3.19006414078708 NA NA NA differentially expressed NA NA NA 14:49625429 14:44682733 ARRIBA other 2 1 medium [],inversion DNAAF2 NA AL356022.1 LINC02302 NA NA NA NA NA -DNAAF2--SCFD2 BS_6M2053M0 1.35307669343535 3.68097130437359 NA NA no change differentially expressed NA NA 14:49633287 4:53073482 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr14--chr4]],translocation/5'-5' DNAAF2 NA SCFD2 NA NA NA NA NA NA -DNAH10--AC025578.1(15483)/AC020637.1(133503) BS_BMMY0H73 0.0414841358499422 NA NA NA no change NA NA NA 12:123774264 12:58410621 ARRIBA frameshift 3 1 high [],inversion DNAH10 NA AC025578.1 AC020637.1 NA NA NA NA NA -DNAH10--PPM1H BS_BMMY0H73 0.0414841358499422 -1.69083631455984 NA NA no change no change NA NA 12:123774264 12:62830736 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr12:60.83Mb]],inversion DNAH10 NA PPM1H NA NA NA NA NA NA -DNAJC10--AC055860.1 BS_NGSG2KB6 1.22463033087821 NA NA NA no change NA NA NA 2:182717072 11:18006746 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr2--chr11]],translocation DNAJC10 NA AC055860.1 NA NA NA NA NA NA -DNAJC10--SERGEF BS_NGSG2KB6 1.22463033087821 -0.933133926089501 NA NA no change no change NA NA 2:182717072 11:18006746 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr2--chr11]],translocation DNAJC10 NA SERGEF NA NA NA NA NA NA -DNASE2--KCNJ10 BS_XM1AHBDJ 0.195503904468636 0.417681627415556 NA NA no change no change NA NA 19:12881290 1:159999494 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr19--chr1]],translocation DNASE2 NA KCNJ10 NA NA NA NA NA NA -DNHD1--NLRP14 BS_ZD5HN296 -1.0498302588354 9.26570296526139 NA NA no change differentially expressed NA NA 11:6497450 11:7038566 ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr11:0.43Mb]],inversion/3'-3' DNHD1 NA NLRP14 NA NA NA NA NA NA -DOCK7--INTS12 BS_QKT3TJVK 2.6436377684434 1.32810938226713 NA NA differentially expressed no change NA NA 1:62583184 4:105877200 ARRIBA frameshift 2 3 high [INTERCHROMOSOMAL[chr1--chr4]],translocation DOCK7 NA INTS12 NA NA NA NA NA NA -DPF2--CBLN4(161825)/RNA5SP487(37755) BS_W4H1D4Y6 1.25389813519154 -0.863028153349748 NA NA no change no change NA NA 11:65333918 20:56167297 ARRIBA frameshift 11 1 high [],translocation DPF2 NA CBLN4 RNA5SP487 NA NA NA NA NA -DPF3--TLE1 BS_ZF6BSFNF -0.357901759055357 0.535934798982283 NA NA no change no change NA NA 14:72894057 9:81685896 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr14--chr9]],translocation DPF3 NA TLE1 NA TranscriptionFactor NA NA NA NA -DRG1--AC021193.1(8339)/NDUFB5P1(707544) BS_49CJNZ06 2.56808110958187 NA NA NA differentially expressed NA NA NA 22:31508376 4:179865920 ARRIBA frameshift 3 0 medium [],translocation DRG1 NA AC021193.1 NDUFB5P1 NA NA NA NA NA -DSC2--DOCK9-AS2(33449)/RPS6P23(51519) BS_RX1YTZ7F 3.71969121424342 -0.962083056683784 NA NA differentially expressed no change NA NA 18:31101903 13:99122074 ARRIBA frameshift 34 4 high [],translocation DSC2 NA DOCK9-AS2 RPS6P23 NA NA NA NA NA -DST--AL357080.1(6913)/AL355596.1(420072) BS_58YXHGAJ -1.37667474256669 NA NA NA no change NA NA NA 6:56843055 6:141026939 ARRIBA frameshift 2 4 high [],inversion DST NA AL357080.1 AL355596.1 Oncogene NA NA NA NA -DTNB--BABAM2 BS_RX1YTZ7F -1.28183346323372 NA NA NA no change NA NA NA 2:25673386 2:27894533 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:2.22Mb]],inversion DTNB NA BABAM2 NA NA NA NA NA NA -DTNB--BABAM2 BS_RX1YTZ7F -1.28183346323372 NA NA NA no change NA NA NA 2:25419515 2:28338450 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:2.22Mb]],inversion DTNB NA BABAM2 NA NA NA NA NA NA -DUX4L2(30134)/DUX4(51361)--AC124017.1 BS_NGSG2KB6 NA NA -0.595069764557869 NA NA NA no change NA 4:190122413 4:53733187 ARRIBA other 11 1 high [],duplication DUX4L2 DUX4 AC124017.1 NA NA NA Oncogene, TranscriptionFactor NA NA -E2F6--PDIA6 BS_W4H1D4Y6 3.67812899935831 3.82515070170512 NA NA differentially expressed differentially expressed NA NA 2:11447627 2:10802640 ARRIBA in-frame 1 1 low [Klijn_CellLines,INTRACHROMOSOMAL[chr2:0.61Mb]],deletion E2F6 NA PDIA6 NA Oncogene, TranscriptionFactor NA NA NA NA -EARS2--CACNA1E BS_58YXHGAJ 0.294616861882487 0.500820111372644 NA NA no change no change NA NA 16:23524209 1:181766543 ARRIBA other 2 2 medium [INTERCHROMOSOMAL[chr16--chr1]],translocation EARS2 NA CACNA1E NA NA NA NA NA NA -EARS2--CACNA1E BS_58YXHGAJ 0.294616861882487 0.500820111372644 NA NA no change no change NA NA 16:23525244 1:181766546 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr16--chr1]],translocation EARS2 NA CACNA1E NA NA NA NA NA NA -EBF4--ASB16-AS1 BS_0VXZCRJS 2.50490442344328 0.477242131841794 NA NA differentially expressed no change NA NA 20:2709642 17:44180264 ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr20--chr17]],translocation EBF4 NA ASB16-AS1 NA TranscriptionFactor NA NA NA NA -ECE1--ACOT7 BS_BMMY0H73 3.08481306074232 -0.599757323298921 NA NA differentially expressed no change NA NA 1:21233558 1:6349866 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:14.82Mb]],deletion ECE1 NA ACOT7 NA NA NA NA NA NA -EEF1E1-BLOC1S5--JARID2 BS_58YXHGAJ 0.559778391072766 -0.331881199756195 NA NA no change no change NA NA 6:8062534 6:15410224 STARFUSION other 5 2 NA [INTRACHROMOSOMAL[chr6:7.14Mb]] EEF1E1-BLOC1S5 NA JARID2 NA NA NA NA NA NA -EEF1E1-BLOC1S5--JARID2 BS_58YXHGAJ 0.559778391072766 -0.331881199756195 NA NA no change no change NA NA 6:8062534 6:15410224 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr6:7.14Mb]],inversion EEF1E1-BLOC1S5 NA JARID2 NA NA NA NA NA NA -EHMT1--MAN1B1 BS_ZD5HN296 -0.000510567029563247 0.522913131332583 NA NA no change no change NA NA 9:137762820 9:137096237 STARFUSION in-frame 8 1 NA [INTRACHROMOSOMAL[chr9:0.51Mb]] EHMT1 NA MAN1B1 NA Oncogene NA NA NA NA -EHMT1--MAN1B1 BS_ZD5HN296 -0.000510567029563247 0.522913131332583 NA NA no change no change NA NA 9:137762820 9:137096237 ARRIBA in-frame 8 1 high [INTRACHROMOSOMAL[chr9:0.51Mb]],duplication EHMT1 NA MAN1B1 NA Oncogene NA NA NA NA -EIF2AK4--GLCE BS_S6Q7NKA3 -1.24516272317641 1.72912749151021 NA NA no change no change NA NA 15:40030456 15:69261087 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr15:29.12Mb]],deletion EIF2AK4 NA GLCE NA Kinase NA NA NA NA -EIF2B1--AC005252.1(4297)/LINC00939(52908) BS_BMMY0H73 2.63624120399688 NA NA 3.21267209541178 differentially expressed NA NA differentially expressed 12:123630169 12:125905780 ARRIBA frameshift 325 87 high [],duplication EIF2B1 NA AC005252.1 LINC00939 NA NA NA NA NA -EIF2B1--AC005252.3(28032)/AC005252.1(11270) BS_BMMY0H73 2.63624120399688 NA NA NA differentially expressed NA NA NA 12:123630169 12:125889151 ARRIBA frameshift 27 8 high [],duplication EIF2B1 NA AC005252.3 AC005252.1 NA NA NA NA NA -EIF4ENIF1--POLR3H BS_ZD5HN296 -0.0120278599069598 -0.744310459664816 NA NA no change no change NA NA 22:31439830 22:41539433 STARFUSION other 3 7 NA [INTRACHROMOSOMAL[chr22:10.03Mb]] EIF4ENIF1 NA POLR3H NA NA NA NA NA NA -EIF4ENIF1--POLR3H BS_ZD5HN296 -0.0120278599069598 -0.744310459664816 NA NA no change no change NA NA 22:31439830 22:41539433 ARRIBA frameshift 3 5 medium [INTRACHROMOSOMAL[chr22:10.03Mb]],duplication EIF4ENIF1 NA POLR3H NA NA NA NA NA NA -ELK1P1(62687)/AC073325.1(5820)--BBS9 BS_68KX6A42 2.12524260008112 2.34253464994076 NA NA differentially expressed differentially expressed NA NA 7:45454892 7:33367767 ARRIBA other 7 3 high [],inversion ELK1P1 AC073325.1 BBS9 NA NA NA NA NA NA -ENAH--PLCH2 BS_X0XXN9BK 2.01410033551963 0.117026353729745 NA NA differentially expressed no change NA NA 1:225652686 1:2484448 STARFUSION frameshift 35 16 NA [INTRACHROMOSOMAL[chr1:222.98Mb]] ENAH NA PLCH2 NA Oncogene Oncogene NA NA NA -ENAH--PLCH2 BS_X0XXN9BK 2.01410033551963 0.117026353729745 NA NA differentially expressed no change NA NA 1:225652686 1:2484448 ARRIBA frameshift 30 16 high [INTRACHROMOSOMAL[chr1:222.98Mb]],inversion ENAH NA PLCH2 NA Oncogene Oncogene NA NA NA -ENC1--AKAP9 BS_BMMY0H73 -0.154213777875445 -0.921471389676153 NA NA no change no change NA NA 5:74640307 7:92110122 STARFUSION other 6 4 NA [INTERCHROMOSOMAL[chr5--chr7]] ENC1 NA AKAP9 NA Oncogene CosmicCensus, Oncogene NA NA NA -ENC1--AKAP9 BS_BMMY0H73 -0.154213777875445 -0.921471389676153 NA NA no change no change NA NA 5:74640307 7:92110122 ARRIBA other 5 3 high [INTERCHROMOSOMAL[chr5--chr7]],translocation ENC1 NA AKAP9 NA Oncogene CosmicCensus, Oncogene NA NA NA -EPHB2--CSMD2 BS_W4H1D4Y6 0.759657076638186 1.48407638355506 NA NA no change no change NA NA 1:22896478 1:33976054 ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr1:10.59Mb]],deletion/5'-5' EPHB2 NA CSMD2 NA Kinase, TumorSuppressorGene, Kinase NA NA NA NA -ERO1A--RNF180 BS_KBEX4RT2 NA 1.40199478678293 NA NA NA no change NA NA 14:52657917 5:64200808 STARFUSION frameshift 13 2 NA [INTERCHROMOSOMAL[chr14--chr5]] ERO1A NA RNF180 NA NA TumorSuppressorGene NA NA NA -ERO1A--RNF180 BS_KBEX4RT2 NA 1.40199478678293 NA NA NA no change NA NA 14:52657917 5:64200808 ARRIBA frameshift 13 3 high [INTERCHROMOSOMAL[chr14--chr5]],translocation ERO1A NA RNF180 NA NA TumorSuppressorGene NA NA NA -ESS2--GNB1L BS_NGSG2KB6 NA 0.433128472212228 NA NA NA no change NA NA 22:19139612 22:19821375 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr22:0.64Mb]],duplication ESS2 NA GNB1L NA NA NA NA NA NA -EWSR1--PATZ1 BS_4PWDGEB0 0.0978771779248229 6.99302597696667 NA NA no change differentially expressed NA NA 22:29290984 22:31344635 STARFUSION other 47 26 NA [chimerdb_omim,Cosmic,chimerdb_pubmed,ChimerKB,ChimerSeq,INTRACHROMOSOMAL[chr22:2.03Mb]] EWSR1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PATZ1 BS_4PWDGEB0 0.0978771779248229 6.99302597696667 NA NA no change differentially expressed NA NA 22:29288786 22:31344613 STARFUSION in-frame 17 26 NA [chimerdb_omim,Cosmic,chimerdb_pubmed,ChimerKB,ChimerSeq,INTRACHROMOSOMAL[chr22:2.03Mb]] EWSR1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PATZ1 BS_4PWDGEB0 0.0978771779248229 6.99302597696667 NA NA no change differentially expressed NA NA 22:29290984 22:31344635 ARRIBA other 45 26 medium [chimerdb_omim,Cosmic,chimerdb_pubmed,ChimerKB,ChimerSeq,INTRACHROMOSOMAL[chr22:2.03Mb]],inversion EWSR1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PLAGL1 BS_JGA9BP3A 0.274681413204135 2.66869706376358 NA NA no change differentially expressed NA NA 22:29292050 6:143948185 STARFUSION other 19 13 NA [INTERCHROMOSOMAL[chr22--chr6]] EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PLAGL1 BS_JGA9BP3A 0.274681413204135 2.66869706376358 NA NA no change differentially expressed NA NA 22:29288786 6:143942663 STARFUSION in-frame 11 13 NA [INTERCHROMOSOMAL[chr22--chr6]] EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PLAGL1 BS_JGA9BP3A 0.274681413204135 2.66869706376358 NA NA no change differentially expressed NA NA 22:29287134 6:143942663 STARFUSION frameshift 9 13 NA [INTERCHROMOSOMAL[chr22--chr6]] EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PLAGL1 BS_JGA9BP3A 0.274681413204135 2.66869706376358 NA NA no change differentially expressed NA NA 22:29288786 6:143942663 ARRIBA in-frame 11 6 high [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PLAGL1 BS_JGA9BP3A 0.274681413204135 2.66869706376358 NA NA no change differentially expressed NA NA 22:29291599 6:143942663 ARRIBA frameshift 1 6 high [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PLAGL1 BS_JGA9BP3A 0.274681413204135 2.66869706376358 NA NA no change differentially expressed NA NA 22:29292050 6:143948185 ARRIBA other 18 11 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -EWSR1--PLAGL1 BS_JGA9BP3A 0.274681413204135 2.66869706376358 NA NA no change differentially expressed NA NA 22:29287134 6:143942663 ARRIBA frameshift 9 3 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -EXOC3-AS1--AP000949.1(78)/AP001116.1(181413) BS_W4H1D4Y6 0.229400252464312 NA NA NA no change NA NA NA 5:442447 21:22884078 ARRIBA other 2 2 medium [],translocation EXOC3-AS1 NA AP000949.1 AP001116.1 NA NA NA NA NA -EXOC4--PAXBP1P1(13166)/DPP6(424056) BS_68KX6A42 3.01067193663707 NA NA -0.0102463069327767 differentially expressed NA NA no change 7:133289116 7:153463041 ARRIBA frameshift 1 2 high [],deletion EXOC4 NA PAXBP1P1 DPP6 Oncogene NA NA NA NA -EXOC4--PAXBP1P1(57183)/DPP6(380039) BS_68KX6A42 3.01067193663707 NA NA -0.0102463069327767 differentially expressed NA NA no change 7:133289116 7:153507058 ARRIBA frameshift 3 2 high [],deletion EXOC4 NA PAXBP1P1 DPP6 Oncogene NA NA NA NA -EXOC6B--AC012368.1 BS_QNNX91SM -0.427131897274843 15.0887484908616 NA NA no change differentially expressed NA NA 2:72465160 2:64249839 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr2:7.92Mb]],deletion/5'-5' EXOC6B NA AC012368.1 NA NA NA NA NA NA -EXOC6B--LINC00309 BS_QNNX91SM -0.427131897274843 2.58724301125646 NA NA no change differentially expressed NA NA 2:72465160 2:64201358 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr2:7.97Mb]],deletion EXOC6B NA LINC00309 NA NA NA NA NA NA -EXT1--AP003548.1 BS_ZD5HN296 2.62855830990291 NA NA NA differentially expressed NA NA NA 8:118110085 8:96386050 STARFUSION other 8 2 NA [INTRACHROMOSOMAL[chr8:21.41Mb]] EXT1 NA AP003548.1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -EXT1--AP003548.1 BS_ZD5HN296 2.62855830990291 NA NA NA differentially expressed NA NA NA 8:118110085 8:96386050 ARRIBA frameshift 7 2 high [INTRACHROMOSOMAL[chr8:21.41Mb]],deletion EXT1 NA AP003548.1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -EZR--MDN1 BS_58YXHGAJ 0.743050028134091 -2.4854807111831 NA NA no change differentially expressed NA NA 6:158818082 6:89683969 ARRIBA frameshift 43 14 high [INTRACHROMOSOMAL[chr6:68.95Mb]],inversion/5'-5' EZR NA MDN1 NA CosmicCensus NA NA NA NA -FAM133B--LINC01510 BS_68KX6A42 0.950914443331259 -0.260400966738816 NA NA no change no change NA NA 7:92590194 7:116599207 ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr7:23.98Mb]],inversion/5'-5' FAM133B NA LINC01510 NA NA NA NA NA NA -FAM174B--AC091078.1 BS_68KX6A42 2.57358528546457 NA NA NA differentially expressed NA NA NA 15:92655316 15:93322223 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr15:0.50Mb]],inversion FAM174B NA AC091078.1 NA NA NA NA NA NA -FAM174B--AC091078.1 BS_68KX6A42 2.57358528546457 NA NA NA differentially expressed NA NA NA 15:92655316 15:93435780 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr15:0.50Mb]],duplication/5'-5' FAM174B NA AC091078.1 NA NA NA NA NA NA -FAM19A5--KIF25 BS_JGA9BP3A 0.0798508584823198 1.86270514897379 NA NA no change no change NA NA 22:48489704 6:168017973 STARFUSION other 33 13 NA [INTERCHROMOSOMAL[chr22--chr6]] FAM19A5 NA KIF25 NA NA NA NA NA NA -FAM19A5--KIF25 BS_JGA9BP3A 0.0798508584823198 1.86270514897379 NA NA no change no change NA NA 22:48576571 6:168017973 STARFUSION other 6 13 NA [INTERCHROMOSOMAL[chr22--chr6]] FAM19A5 NA KIF25 NA NA NA NA NA NA -FAM19A5--KIF25 BS_JGA9BP3A 0.0798508584823198 1.86270514897379 NA NA no change no change NA NA 22:48489704 6:168017973 ARRIBA frameshift 37 11 high [INTERCHROMOSOMAL[chr22--chr6]],translocation FAM19A5 NA KIF25 NA NA NA NA NA NA -FAM19A5--KIF25 BS_JGA9BP3A 0.0798508584823198 1.86270514897379 NA NA no change no change NA NA 22:48576571 6:168017973 ARRIBA frameshift 6 12 high [INTERCHROMOSOMAL[chr22--chr6]],translocation FAM19A5 NA KIF25 NA NA NA NA NA NA -FAM200B--SOGA1 BS_NGSG2KB6 1.24758887813719 0.292166942358043 NA NA no change no change NA NA 4:15687149 20:36839441 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr4--chr20]],translocation FAM200B NA SOGA1 NA TranscriptionFactor NA NA NA NA -FAM20C--HECW1 BS_68KX6A42 3.81360254345172 -1.07643652617886 NA NA differentially expressed no change NA NA 7:208976 7:43298898 ARRIBA frameshift 12 3 medium [INTRACHROMOSOMAL[chr7:42.85Mb]],inversion/3'-3' FAM20C NA HECW1 NA NA NA NA NA NA -FAM20C--LINC01006 BS_68KX6A42 3.81360254345172 3.26734758522353 NA NA differentially expressed differentially expressed NA NA 7:208976 7:156573149 ARRIBA frameshift 42 20 high [INTRACHROMOSOMAL[chr7:156.21Mb]],deletion/5'-5' FAM20C NA LINC01006 NA NA NA NA NA NA -FAM20C--POU6F2 BS_68KX6A42 3.81360254345172 -0.595873703479487 NA NA differentially expressed no change NA NA 7:220100 7:39249622 ARRIBA other 14 5 medium [INTRACHROMOSOMAL[chr7:38.72Mb]],deletion FAM20C NA POU6F2 NA NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA -FANK1--AL158835.1 BS_XZM79E42 -0.369801875452144 NA NA NA no change NA NA NA 10:125997485 10:125706582 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr10:0.19Mb]],duplication FANK1 NA AL158835.1 NA NA NA NA NA NA -FAR1--NREP BS_NB9XXBW6 0.369927229480569 1.17210866717301 NA NA no change no change NA NA 11:13668806 5:111735507 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr11--chr5]],translocation FAR1 NA NREP NA NA NA NA NA NA -FARS2--BCKDHB BS_58YXHGAJ 1.13482812581933 1.57193490956942 NA NA no change no change NA NA 6:5545340 6:80341567 ARRIBA frameshift 14 7 high [INTRACHROMOSOMAL[chr6:74.34Mb]],inversion/3'-3' FARS2 NA BCKDHB NA NA NA NA NA NA -FAT3--DISC1FP1(8808)/AP001002.3(48456) BS_6M2053M0 0.81897841362433 1.07805217576365 NA NA no change no change NA NA 11:92524948 11:90923860 ARRIBA frameshift 2 0 medium [],inversion FAT3 NA DISC1FP1 AP001002.3 CosmicCensus NA NA NA NA -FBXL5--AC098829.1 BS_49CJNZ06 0.768281895539079 NA NA NA no change NA NA NA 4:15612266 4:15017881 ARRIBA frameshift 3 2 medium [INTRACHROMOSOMAL[chr4:0.18Mb]],deletion FBXL5 NA AC098829.1 NA NA NA NA NA NA -FBXL5--AC098829.1 BS_4PWDGEB0 2.11909492077032 NA NA NA differentially expressed NA NA NA 4:15612266 4:15017881 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.18Mb]],deletion FBXL5 NA AC098829.1 NA NA NA NA NA NA -FBXL5--AC098829.1 BS_KBEX4RT2 1.28690450290185 NA NA NA no change NA NA NA 4:15612266 4:15017881 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.18Mb]],deletion FBXL5 NA AC098829.1 NA NA NA NA NA NA -FBXO3--PDHX BS_ZD5HN296 -0.0526337882150523 -0.148151935724132 NA NA no change no change NA NA 11:33748777 11:35017015 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr11:1.14Mb]],inversion FBXO3 NA PDHX NA NA NA NA NA NA -FBXW7--DCLK2 BS_R7NTZR4C 0.173669351463408 3.32919709530815 NA NA no change differentially expressed NA NA 4:152411303 4:150193138 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr4:2.06Mb]],inversion FBXW7 NA DCLK2 NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, Kinase NA NA NA -FBXW7--DCLK2 BS_R7NTZR4C 0.173669351463408 3.32919709530815 NA NA no change differentially expressed NA NA 4:152411303 4:150247603 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:2.06Mb]],inversion FBXW7 NA DCLK2 NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, Kinase NA NA NA -FECH--NARS BS_NB9XXBW6 1.61531982746062 0.960591865581935 NA NA no change no change NA NA 18:57580073 18:57602943 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr18:0.01Mb],LOCAL_REARRANGEMENT:-:[13884]],duplication FECH NA NARS NA NA NA NA NA NA -FEM1B--LINC02351(12708)/FAM169B(96960) BS_68KX6A42 2.18099218833778 NA NA 2.33707631339743 differentially expressed NA NA differentially expressed 15:68278665 15:98340202 ARRIBA frameshift 4 0 high [],deletion FEM1B NA LINC02351 FAM169B NA NA NA NA NA -FGF12--CCDC50 BS_QNNX91SM 2.05492713217893 4.89713897500463 NA NA differentially expressed differentially expressed NA NA 3:192727181 3:191357088 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr3:0.74Mb]],inversion FGF12 NA CCDC50 NA Oncogene NA NA NA NA -FNTB--TRMT5 BS_JB43XBCQ 1.35195131701628 2.88320157035944 NA NA no change differentially expressed NA NA 14:65044443 14:60975800 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr14:4.01Mb]],duplication/5'-5' FNTB NA TRMT5 NA NA NA NA NA NA -FOCAD--AC010197.1 BS_ZD5HN296 -0.922245072599867 NA NA NA no change NA NA NA 9:20916937 12:21759914 ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr9--chr12]],translocation FOCAD NA AC010197.1 NA NA NA NA NA NA -FOPNL--FOPNL(16036)/AC130651.1(27036) BS_EZ3147MX 2.18562600113297 2.18562600113297 NA NA differentially expressed differentially expressed NA NA 16:15884008 16:15904661 ARRIBA frameshift 41 12 high [],duplication FOPNL NA FOPNL AC130651.1 NA NA NA NA NA -FOXO3--AL356967.1(616)/HACE1(39806) BS_X0XXN9BK 0.0643341978823225 NA NA -1.33266693427451 no change NA NA no change 6:108561829 6:104688287 ARRIBA frameshift 7 1 high [],inversion FOXO3 NA AL356967.1 HACE1 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA TumorSuppressorGene NA -FOXO3--AL589740.1 BS_58YXHGAJ 0.380404379977976 NA NA NA no change NA NA NA 6:108561829 6:97969406 STARFUSION other 8 4 NA [INTRACHROMOSOMAL[chr6:10.16Mb]] FOXO3 NA AL589740.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -FOXO3--AL589740.1 BS_58YXHGAJ 0.380404379977976 NA NA NA no change NA NA NA 6:108561829 6:98099186 STARFUSION other 3 4 NA [INTRACHROMOSOMAL[chr6:10.16Mb]] FOXO3 NA AL589740.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -FOXO3--AL589740.1 BS_58YXHGAJ 0.380404379977976 NA NA NA no change NA NA NA 6:108561829 6:97969406 ARRIBA frameshift 8 4 high [INTRACHROMOSOMAL[chr6:10.16Mb]],duplication FOXO3 NA AL589740.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -FOXO3--AL589740.1 BS_58YXHGAJ 0.380404379977976 NA NA NA no change NA NA NA 6:108561829 6:98099186 ARRIBA frameshift 3 4 high [INTRACHROMOSOMAL[chr6:10.16Mb]],duplication FOXO3 NA AL589740.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -FOXO3--AL589740.1 BS_58YXHGAJ 0.380404379977976 NA NA NA no change NA NA NA 6:108561829 6:98275164 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr6:10.16Mb]],duplication FOXO3 NA AL589740.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -FOXO3--NPM1P10(656531)/AL356967.1(3947) BS_X0XXN9BK 0.0643341978823225 34.8277462670523 NA NA no change differentially expressed NA NA 6:108561829 6:104683294 ARRIBA frameshift 1 1 high [],inversion FOXO3 NA NPM1P10 AL356967.1 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -FRMD4A--CHST15(56440)/OAT(247256) BS_EZ3147MX 1.75221008286286 1.77277652885798 NA 1.84585696983726 no change no change NA no change 10:13807644 10:124150047 ARRIBA other 87 84 high [],duplication FRMD4A NA CHST15 OAT NA NA NA NA NA -FRMD4A--ZMIZ1 BS_EZ3147MX 1.75221008286286 1.98610074174931 NA NA no change no change NA NA 10:13810814 10:79098115 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr10:64.61Mb]],duplication/5'-5' FRMD4A NA ZMIZ1 NA NA Oncogene NA NA NA -FRMD5--TTC23 BS_JB43XBCQ 1.68905390700688 2.63112302840512 NA NA no change differentially expressed NA NA 15:43909882 15:99228732 STARFUSION other 10 4 NA [INTRACHROMOSOMAL[chr15:54.94Mb]] FRMD5 NA TTC23 NA NA NA NA NA NA -FRMD5--TTC23 BS_JB43XBCQ 1.68905390700688 2.63112302840512 NA NA no change differentially expressed NA NA 15:43909882 15:99228732 ARRIBA in-frame 9 4 high [INTRACHROMOSOMAL[chr15:54.94Mb]],duplication FRMD5 NA TTC23 NA NA NA NA NA NA -FRMD5--TTC23 BS_JB43XBCQ 1.68905390700688 2.63112302840512 NA NA no change differentially expressed NA NA 15:43909882 15:99241559 ARRIBA frameshift 1 4 high [INTRACHROMOSOMAL[chr15:54.94Mb]],duplication FRMD5 NA TTC23 NA NA NA NA NA NA -FRMD6--DBF4P1(115616)/RPL17P35(333908) BS_QNNX91SM 1.61764048509378 4.40298784128272 NA -0.565408144653701 no change differentially expressed NA no change 14:51651996 10:64286466 ARRIBA other 19 0 high [],translocation FRMD6 NA DBF4P1 RPL17P35 NA NA NA NA NA -FRMD6--DBF4P1(130666)/RPL17P35(318858) BS_QNNX91SM 1.61764048509378 4.40298784128272 NA -0.565408144653701 no change differentially expressed NA no change 14:51651996 10:64301516 ARRIBA other 8 2 high [],translocation FRMD6 NA DBF4P1 RPL17P35 NA NA NA NA NA -FUT9--UTRN(422130)/EPM2A(107371) BS_58YXHGAJ 0.513472383385429 0.0236705811549544 NA 0.214121381648934 no change no change NA no change 6:96016212 6:145275164 ARRIBA other 19 1 high [],deletion FUT9 NA UTRN EPM2A NA NA NA NA NA -GABRA2--AC024132.1 BS_RX1YTZ7F 0.398951053405494 15.5508230217114 NA NA no change differentially expressed NA NA 4:46388636 4:27209750 STARFUSION other 6 4 NA [INTRACHROMOSOMAL[chr4:19.03Mb]] GABRA2 NA AC024132.1 NA NA NA NA NA NA -GABRA2--AC024132.1 BS_RX1YTZ7F 0.398951053405494 15.5508230217114 NA NA no change differentially expressed NA NA 4:46388636 4:27209750 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr4:19.03Mb]],deletion GABRA2 NA AC024132.1 NA NA NA NA NA NA -GABRA2--AC024132.2(10858)/AC024132.1(56596) BS_RX1YTZ7F 0.398951053405494 NA NA 15.5508230217114 no change NA NA differentially expressed 4:46388636 4:27150909 ARRIBA frameshift 2 0 medium [],deletion GABRA2 NA AC024132.2 AC024132.1 NA NA NA NA NA -GABRA2--AC024132.2(27055)/AC024132.1(40399) BS_RX1YTZ7F 0.398951053405494 NA NA 15.5508230217114 no change NA NA differentially expressed 4:46388636 4:27167106 ARRIBA frameshift 23 2 high [],deletion GABRA2 NA AC024132.2 AC024132.1 NA NA NA NA NA -GABRA2--AC024132.2(54004)/AC024132.1(13450) BS_RX1YTZ7F 0.398951053405494 NA NA 15.5508230217114 no change NA NA differentially expressed 4:46388636 4:27194055 ARRIBA frameshift 1 0 low [],inversion GABRA2 NA AC024132.2 AC024132.1 NA NA NA NA NA -GABRA2--AC024132.2(54047)/AC024132.1(13407) BS_RX1YTZ7F 0.398951053405494 NA NA 15.5508230217114 no change NA NA differentially expressed 4:46388636 4:27194098 ARRIBA frameshift 5 2 high [],deletion GABRA2 NA AC024132.2 AC024132.1 NA NA NA NA NA -GABRA2--AC024132.2(66100)/AC024132.1(1354) BS_RX1YTZ7F 0.398951053405494 NA NA 15.5508230217114 no change NA NA differentially expressed 4:46388636 4:27206151 ARRIBA frameshift 2 1 high [],deletion GABRA2 NA AC024132.2 AC024132.1 NA NA NA NA NA -GABRB2--MAP3K1 BS_KBEX4RT2 -1.69862970720351 7.31170660325733 NA NA no change differentially expressed NA NA 5:161545227 5:56881879 ARRIBA frameshift 3 6 high [INTRACHROMOSOMAL[chr5:104.39Mb]],deletion/5'-5' GABRB2 NA MAP3K1 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -GALNT17--AC078842.1(1035)/DGKI(25519) BS_68KX6A42 NA NA NA 1.65900070686506 NA NA NA no change 7:71335733 7:137355518 ARRIBA frameshift 3 0 high [],inversion GALNT17 NA AC078842.1 DGKI NA NA NA NA NA -GALNT8--ERBB3 BS_QKT3TJVK 1.0106027627464 -0.122551312676188 NA NA no change no change NA NA 12:4746258 12:56083751 STARFUSION frameshift 8 4 NA [INTRACHROMOSOMAL[chr12:51.23Mb]] GALNT8 NA ERBB3 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -GALNT8--ERBB3 BS_QKT3TJVK 1.0106027627464 -0.122551312676188 NA NA no change no change NA NA 12:4746258 12:56083751 ARRIBA frameshift 8 2 high [INTRACHROMOSOMAL[chr12:51.23Mb]],deletion GALNT8 NA ERBB3 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -GALNT8--ERBB3 BS_QKT3TJVK 1.0106027627464 -0.122551312676188 NA NA no change no change NA NA 12:4745626 12:56083751 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:51.23Mb]],deletion GALNT8 NA ERBB3 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -GAP43(69668)/LSAMP(11205)--LSAMP-AS1 BS_49CJNZ06 2.3376556387961 11.0027381244986 -0.187463780830005 NA differentially expressed differentially expressed no change NA 3:115791158 3:116354210 ARRIBA other 3 1 medium [],deletion GAP43 LSAMP LSAMP-AS1 NA NA NA TumorSuppressorGene NA NA -GAP43(69668)/LSAMP(11205)--LSAMP-AS1 BS_BMMY0H73 2.31094551138477 18.2074741373288 -0.117085216841027 NA differentially expressed differentially expressed no change NA 3:115791158 3:116354210 ARRIBA other 3 1 medium [],deletion GAP43 LSAMP LSAMP-AS1 NA NA NA TumorSuppressorGene NA NA -GAP43(69668)/LSAMP(11205)--LSAMP-AS1 BS_W4H1D4Y6 0.601266006238491 7.54577400780738 -1.34600817229192 NA no change differentially expressed no change NA 3:115791158 3:116354210 ARRIBA other 2 1 medium [],deletion GAP43 LSAMP LSAMP-AS1 NA NA NA TumorSuppressorGene NA NA -GFAP--MARF1 BS_F0JB4EAK 2.54936674811012 NA NA NA differentially expressed NA NA NA 17:44911672 16:15636342 ARRIBA in-frame 3 0 low [INTERCHROMOSOMAL[chr17--chr16]],translocation GFAP NA MARF1 NA NA NA NA NA NA -GFAP--MARF1 BS_YDEVMD24 2.42263603940955 NA NA NA differentially expressed NA NA NA 17:44911672 16:15636342 ARRIBA in-frame 3 0 low [INTERCHROMOSOMAL[chr17--chr16]],translocation GFAP NA MARF1 NA NA NA NA NA NA -GGA2--CACNA1E BS_58YXHGAJ -0.104094052443878 0.500820111372644 NA NA no change no change NA NA 16:23519587 1:181766546 ARRIBA frameshift 1 2 high [INTERCHROMOSOMAL[chr16--chr1]],translocation GGA2 NA CACNA1E NA NA NA NA NA NA -GLI3--AC092013.1(330257)/SOCS5P1(250184) BS_68KX6A42 2.30949137958329 -0.701550431212421 NA -0.0747119177254645 differentially expressed no change NA no change 7:42148226 7:85966601 ARRIBA frameshift 5 1 high [],duplication GLI3 NA AC092013.1 SOCS5P1 Oncogene, TranscriptionFactor NA NA NA NA -GLIS2--ABAT BS_XZM79E42 -0.116210944636479 -0.406108959879449 NA NA no change no change NA NA 16:4316254 16:8735699 ARRIBA other 17 0 medium [INTRACHROMOSOMAL[chr16:4.33Mb]],deletion GLIS2 NA ABAT NA TranscriptionFactor NA NA NA NA -GLIS3--RFX3 BS_GWSJ4Z9H 4.29556344569507 2.08360249382331 NA NA differentially expressed differentially expressed NA NA 9:4299421 9:3395596 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr9:0.30Mb]],deletion GLIS3 NA RFX3 NA TranscriptionFactor TranscriptionFactor NA NA NA -GMEB1--AL020995.1 BS_W4H1D4Y6 4.08572278067886 NA NA NA differentially expressed NA NA NA 1:28710642 1:33031056 STARFUSION other 44 19 NA [INTRACHROMOSOMAL[chr1:4.27Mb]] GMEB1 NA AL020995.1 NA TranscriptionFactor NA NA NA NA -GMEB1--AL020995.1 BS_W4H1D4Y6 4.08572278067886 NA NA NA differentially expressed NA NA NA 1:28710642 1:33031056 ARRIBA frameshift 44 19 high [INTRACHROMOSOMAL[chr1:4.27Mb]],deletion GMEB1 NA AL020995.1 NA TranscriptionFactor NA NA NA NA -GNA12--NXPH1 BS_68KX6A42 1.46311673578503 3.58864176635001 NA NA no change differentially expressed NA NA 7:2843853 7:8751008 ARRIBA in-frame 5 3 high [INTRACHROMOSOMAL[chr7:5.59Mb]],inversion GNA12 NA NXPH1 NA Oncogene NA NA NA NA -GNA12--STARD3NL BS_68KX6A42 1.46311673578503 2.07403982766862 NA NA no change differentially expressed NA NA 7:2843853 7:38212110 ARRIBA frameshift 13 6 high [INTRACHROMOSOMAL[chr7:35.33Mb]],duplication/5'-5' GNA12 NA STARD3NL NA Oncogene NA NA NA NA -GNAZ--MYO18B BS_JGA9BP3A -1.37751565693949 8.38839130755515 NA NA no change differentially expressed NA NA 22:23070570 22:25946137 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr22:2.62Mb]],deletion GNAZ NA MYO18B NA NA TumorSuppressorGene NA NA NA -GNB1L--NF2 BS_JGA9BP3A 0.66615436674015 -0.0277482287379935 NA NA no change no change NA NA 22:19802001 22:29664990 STARFUSION in-frame 10 10 NA [INTRACHROMOSOMAL[chr22:9.75Mb]] GNB1L NA NF2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -GNB1L--NF2 BS_JGA9BP3A 0.66615436674015 -0.0277482287379935 NA NA no change no change NA NA 22:19802001 22:29664990 ARRIBA in-frame 10 5 high [INTRACHROMOSOMAL[chr22:9.75Mb]],inversion GNB1L NA NF2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -GNB4--CLDN11 BS_ZF6BSFNF 5.4132432423925 1.72455518267048 NA NA differentially expressed no change NA NA 3:179451346 3:170708044 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:8.54Mb]],inversion GNB4 NA CLDN11 NA NA NA NA NA NA -GNL3--RALGAPA2 BS_S6Q7NKA3 2.23979240214759 6.16637636360407 NA NA differentially expressed differentially expressed NA NA 3:52690704 20:20412148 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr3--chr20]],translocation GNL3 NA RALGAPA2 NA NA NA NA NA NA -GNPTAB--ACTR6 BS_1N7MQZGR 0.40660947075471 1.03705689425411 NA NA no change no change NA NA 12:101780152 12:100218415 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:1.50Mb]],inversion GNPTAB NA ACTR6 NA NA NA NA NA NA -GOLGA4--DCAF1 BS_GWSJ4Z9H 1.1303183947706 NA NA NA no change NA NA NA 3:37347296 3:51443903 STARFUSION in-frame 11 2 NA [INTRACHROMOSOMAL[chr3:14.03Mb]] GOLGA4 NA DCAF1 NA NA NA NA NA NA -GOLGA4--DCAF1 BS_GWSJ4Z9H 1.1303183947706 NA NA NA no change NA NA NA 3:37347296 3:51443903 ARRIBA in-frame 8 2 high [INTRACHROMOSOMAL[chr3:14.03Mb]],inversion GOLGA4 NA DCAF1 NA NA NA NA NA NA -GPC2--AL513303.1(51369)/MIR6078(3978) BS_GWSJ4Z9H 7.30471062512418 NA NA NA differentially expressed NA NA NA 7:100172087 10:3987182 ARRIBA frameshift 4 2 high [],translocation GPC2 NA AL513303.1 MIR6078 NA NA NA NA NA -GRB2--C17orf82(6948)/TBX4(32176) BS_2JP7RBMB 0.534807565026864 0.595066245445243 NA -0.521234094162051 no change no change NA no change 17:75405489 17:61420228 ARRIBA other 1 2 medium [],deletion GRB2 NA C17orf82 TBX4 Oncogene NA NA TranscriptionFactor NA -GRID2IP--TERT BS_68KX6A42 0.189338285009191 3.30166949456583 NA NA no change differentially expressed NA NA 7:6501781 5:1277325 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation/5'-5' GRID2IP NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA -GRIK2--ATP5LP2(122040)/CLVS2(13943) BS_58YXHGAJ 0.885529131954065 -0.27789742924687 NA 0.923408465589238 no change no change NA no change 6:101928632 6:122982028 ARRIBA frameshift 4 2 high [],deletion GRIK2 NA ATP5LP2 CLVS2 NA NA NA NA NA -GRIK2--MTCYBP36(180220)/CYCSP17(876783) BS_58YXHGAJ 0.885529131954065 NA NA NA no change NA NA NA 6:101928632 6:94627399 ARRIBA frameshift 3 0 high [],inversion GRIK2 NA MTCYBP36 CYCSP17 NA NA NA NA NA -GRIK3--WIPI2 BS_NGSG2KB6 3.18275679356866 0.167265095211916 NA NA differentially expressed no change NA NA 1:37033994 7:5199576 STARFUSION frameshift 20 2 NA [INTERCHROMOSOMAL[chr1--chr7]] GRIK3 NA WIPI2 NA NA NA NA NA NA -GRIK3--WIPI2 BS_NGSG2KB6 3.18275679356866 0.167265095211916 NA NA differentially expressed no change NA NA 1:37033994 7:5199576 ARRIBA frameshift 16 2 high [INTERCHROMOSOMAL[chr1--chr7]],translocation GRIK3 NA WIPI2 NA NA NA NA NA NA -GRIK3--WIPI2 BS_NGSG2KB6 3.18275679356866 0.167265095211916 NA NA differentially expressed no change NA NA 1:37033994 7:5193118 ARRIBA frameshift 1 2 high [INTERCHROMOSOMAL[chr1--chr7]],translocation GRIK3 NA WIPI2 NA NA NA NA NA NA -GRIK3--WIPI2 BS_NGSG2KB6 3.18275679356866 0.167265095211916 NA NA differentially expressed no change NA NA 1:37033994 7:5214535 ARRIBA in-frame 4 1 medium [INTERCHROMOSOMAL[chr1--chr7]],translocation GRIK3 NA WIPI2 NA NA NA NA NA NA -GRK4--TMEM50B BS_685DACMS -0.153259318035031 -1.9361975292492 NA NA no change no change NA NA 4:3029409 21:33439297 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr4--chr21]],translocation GRK4 NA TMEM50B NA Kinase NA NA NA NA -GTF2I--CNTNAP2 BS_68KX6A42 1.54567055776352 -1.32260466797957 NA NA no change no change NA NA 7:74658068 7:148040438 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr7:71.36Mb]],inversion/3'-3' GTF2I NA CNTNAP2 NA TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA -GTF2I--MET BS_68KX6A42 1.54567055776352 11.1775292156991 NA NA no change differentially expressed NA NA 7:74658068 7:116699071 STARFUSION other 187 75 NA [INTRACHROMOSOMAL[chr7:41.91Mb]] GTF2I NA MET NA TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -GTF2I--MET BS_68KX6A42 1.54567055776352 11.1775292156991 NA NA no change differentially expressed NA NA 7:74658068 7:116699071 ARRIBA other 167 67 high [INTRACHROMOSOMAL[chr7:41.91Mb]],deletion GTF2I NA MET NA TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -GTF2I--MET BS_68KX6A42 1.54567055776352 11.1775292156991 NA NA no change differentially expressed NA NA 7:74658068 7:116731668 ARRIBA other 38 6 high [INTRACHROMOSOMAL[chr7:41.91Mb]],deletion GTF2I NA MET NA TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -GTF2I--MPP6 BS_68KX6A42 1.54567055776352 -0.140039492134722 NA NA no change no change NA NA 7:74658068 7:24649612 ARRIBA other 14 3 high [INTRACHROMOSOMAL[chr7:49.96Mb]],duplication GTF2I NA MPP6 NA TranscriptionFactor NA NA NA NA -GUSBP6--MPLKIP BS_68KX6A42 -0.344541518674729 2.95968487861348 NA NA no change differentially expressed NA NA 7:64120545 7:40133259 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:23.97Mb]],inversion GUSBP6 NA MPLKIP NA NA NA NA NA NA -H2AFV--DGKB BS_68KX6A42 3.08870812771352 -0.559376118430487 NA NA differentially expressed no change NA NA 7:44835529 7:14613413 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:29.85Mb]],deletion H2AFV NA DGKB NA NA Kinase NA NA NA -HDAC2-AS2--AKAP7 BS_58YXHGAJ NA -0.0484134192629272 NA NA NA no change NA NA 6:113996060 6:131145285 STARFUSION other 6 1 NA [INTRACHROMOSOMAL[chr6:16.66Mb]] HDAC2-AS2 NA AKAP7 NA NA NA NA NA NA -HDAC2-AS2--AKAP7 BS_58YXHGAJ NA -0.0484134192629272 NA NA NA no change NA NA 6:113996060 6:131145285 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr6:16.66Mb]],deletion HDAC2-AS2 NA AKAP7 NA NA NA NA NA NA -HDAC7--RN7SKP141(64269)/SMC4P1(89774) BS_BMMY0H73 1.49773559087159 NA NA NA no change NA NA NA 12:47794760 2:136454938 ARRIBA frameshift 6 2 high [],translocation HDAC7 NA RN7SKP141 SMC4P1 NA NA NA NA NA -HDHD5-AS1--C22orf39 BS_8ZY4GST0 NA 0.391704350258847 NA NA NA no change NA NA 22:17159474 22:19351446 STARFUSION other 5 7 NA [INTRACHROMOSOMAL[chr22:2.19Mb]] HDHD5-AS1 NA C22orf39 NA NA NA NA NA NA -HDHD5-AS1--C22orf39 BS_8ZY4GST0 NA 0.391704350258847 NA NA NA no change NA NA 22:17159551 22:19351446 STARFUSION other 5 7 NA [INTRACHROMOSOMAL[chr22:2.19Mb]] HDHD5-AS1 NA C22orf39 NA NA NA NA NA NA -HDHD5-AS1--C22orf39 BS_8ZY4GST0 NA 0.391704350258847 NA NA NA no change NA NA 22:17159837 22:19351446 STARFUSION other 1 7 NA [INTRACHROMOSOMAL[chr22:2.19Mb]] HDHD5-AS1 NA C22orf39 NA NA NA NA NA NA -HDHD5-AS1--C22orf39 BS_8ZY4GST0 NA 0.391704350258847 NA NA NA no change NA NA 22:17159551 22:19351446 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr22:2.19Mb]],inversion HDHD5-AS1 NA C22orf39 NA NA NA NA NA NA -HDHD5-AS1--HIRA BS_8ZY4GST0 NA 0.15789388358148 NA NA NA no change NA NA 22:17159474 22:19351446 STARFUSION other 5 12 NA [INTRACHROMOSOMAL[chr22:2.17Mb]] HDHD5-AS1 NA HIRA NA NA TumorSuppressorGene NA NA NA -HDHD5-AS1--HIRA BS_8ZY4GST0 NA 0.15789388358148 NA NA NA no change NA NA 22:17159551 22:19351446 STARFUSION other 5 12 NA [INTRACHROMOSOMAL[chr22:2.17Mb]] HDHD5-AS1 NA HIRA NA NA TumorSuppressorGene NA NA NA -HDHD5-AS1--HIRA BS_8ZY4GST0 NA 0.15789388358148 NA NA NA no change NA NA 22:17159551 22:19351446 ARRIBA other 5 11 high [INTRACHROMOSOMAL[chr22:2.17Mb]],inversion HDHD5-AS1 NA HIRA NA NA TumorSuppressorGene NA NA NA -HDHD5-AS1--HIRA BS_8ZY4GST0 NA 0.15789388358148 NA NA NA no change NA NA 22:17159837 22:19351446 ARRIBA other 1 11 high [INTRACHROMOSOMAL[chr22:2.17Mb]],inversion HDHD5-AS1 NA HIRA NA NA TumorSuppressorGene NA NA NA -HELZ2--CDH4 BS_RX1YTZ7F 2.79409875843097 0.284673954600277 NA NA differentially expressed no change NA NA 20:63559282 20:61844668 ARRIBA in-frame 3 1 high [INTRACHROMOSOMAL[chr20:1.62Mb]],inversion HELZ2 NA CDH4 NA NA TumorSuppressorGene NA NA NA -HERC4--TYSND1 BS_49CJNZ06 1.32630971658724 -0.295143484653776 NA NA no change no change NA NA 10:67953789 10:70144961 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr10:2.06Mb]],duplication HERC4 NA TYSND1 NA NA NA NA NA NA -HEXB--AKAP9 BS_BMMY0H73 0.851474608447751 -0.921471389676153 NA NA no change no change NA NA 5:74639918 7:92109238 ARRIBA other 1 2 medium [INTERCHROMOSOMAL[chr5--chr7]],translocation/3'-3' HEXB NA AKAP9 NA NA CosmicCensus, Oncogene NA NA NA -HGF--NPM1P14(1047)/AC002463.1(99661) BS_68KX6A42 3.75733389641823 0.642016684078439 NA NA differentially expressed no change NA NA 7:81752120 7:112522717 ARRIBA frameshift 5 2 high [],inversion HGF NA NPM1P14 AC002463.1 Oncogene NA NA NA NA -HGNC:18790--SRPK2 BS_ZQKGJD70 NA 0.376460038592386 NA NA NA no change NA NA 4:4391591 7:105118022 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr4--chr7]],translocation HGNC:18790 NA SRPK2 NA NA Kinase, Oncogene, Kinase NA NA NA -HILS1--C9orf3 BS_3AC3SRWH -0.982143368674134 -0.239607417498462 NA NA no change no change NA NA 17:50180710 9:95086682 ARRIBA other 1 1 high [INTERCHROMOSOMAL[chr17--chr9]],translocation HILS1 NA C9orf3 NA NA NA NA NA NA -HIP1--NOG(9117)/C17orf67(187206) BS_68KX6A42 2.5724568144186 -0.445881341062263 NA -0.0346183645000925 differentially expressed no change NA no change 7:75738801 17:56604707 ARRIBA frameshift 24 16 high [],translocation HIP1 NA NOG C17orf67 CosmicCensus, Oncogene NA NA NA NA -HIPK2--ZNF804B BS_68KX6A42 -0.466827070149206 0.430562027546509 NA NA no change no change NA NA 7:139715932 7:88839792 ARRIBA frameshift 66 20 high [INTRACHROMOSOMAL[chr7:50.22Mb]],deletion/5'-5' HIPK2 NA ZNF804B NA Kinase, TumorSuppressorGene, Oncogene, Kinase TranscriptionFactor NA NA NA -HIPK3--AL078612.1 BS_ZD5HN296 2.81773191872838 NA NA NA differentially expressed NA NA NA 11:33287511 11:32101418 ARRIBA frameshift 16 1 high [INTRACHROMOSOMAL[chr11:1.15Mb]],inversion HIPK3 NA AL078612.1 NA Kinase, Kinase NA NA NA NA -HIPK3--CSTF3 BS_W4H1D4Y6 2.67737344129835 0.14008377820509 NA NA differentially expressed no change NA NA 11:33257889 11:33141986 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr11:0.09Mb],LOCAL_INVERSION:+:-:[94301]],inversion HIPK3 NA CSTF3 NA Kinase, Kinase NA NA NA NA -HIPK3--RCN1 BS_ZD5HN296 2.81773191872838 2.03768264918596 NA NA differentially expressed differentially expressed NA NA 11:33287511 11:32101418 ARRIBA frameshift 17 1 high [INTRACHROMOSOMAL[chr11:1.15Mb]],inversion/3'-3' HIPK3 NA RCN1 NA Kinase, Kinase NA NA NA NA -HIRA--IL17RA BS_8ZY4GST0 0.15789388358148 3.16637098320825 NA NA no change differentially expressed NA NA 22:19431440 22:17097062 STARFUSION frameshift 18 13 NA [INTRACHROMOSOMAL[chr22:2.22Mb]] HIRA NA IL17RA NA TumorSuppressorGene NA NA NA NA -HIRA--IL17RA BS_8ZY4GST0 0.15789388358148 3.16637098320825 NA NA no change differentially expressed NA NA 22:19447378 22:17097062 STARFUSION in-frame 3 13 NA [INTRACHROMOSOMAL[chr22:2.22Mb]] HIRA NA IL17RA NA TumorSuppressorGene NA NA NA NA -HIRA--IL17RA BS_8ZY4GST0 0.15789388358148 3.16637098320825 NA NA no change differentially expressed NA NA 22:19431440 22:17097062 ARRIBA frameshift 15 11 high [INTRACHROMOSOMAL[chr22:2.22Mb]],inversion HIRA NA IL17RA NA TumorSuppressorGene NA NA NA NA -HIRA--IL17RA BS_8ZY4GST0 0.15789388358148 3.16637098320825 NA NA no change differentially expressed NA NA 22:19447378 22:17097062 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr22:2.22Mb]],inversion HIRA NA IL17RA NA TumorSuppressorGene NA NA NA NA -HIVEP2--CNR1 BS_58YXHGAJ -0.487983587527605 0.488224804611732 NA NA no change no change NA NA 6:142901664 6:88145337 ARRIBA other 1 3 high [INTRACHROMOSOMAL[chr6:54.59Mb]],deletion HIVEP2 NA CNR1 NA TranscriptionFactor NA NA NA NA -HIVEP2--CNR1 BS_58YXHGAJ -0.487983587527605 0.488224804611732 NA NA no change no change NA NA 6:142945944 6:88164294 ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr6:54.59Mb]],deletion HIVEP2 NA CNR1 NA TranscriptionFactor NA NA NA NA -HIVEP2--CNR1 BS_58YXHGAJ -0.487983587527605 0.488224804611732 NA NA no change no change NA NA 6:142945944 6:88145337 ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr6:54.59Mb]],deletion HIVEP2 NA CNR1 NA TranscriptionFactor NA NA NA NA -HMG20A--AC016987.1 BS_W4H1D4Y6 1.41228102897185 NA NA NA no change NA NA NA 15:77464387 15:86939766 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:9.45Mb]],inversion HMG20A NA AC016987.1 NA TranscriptionFactor NA NA NA NA -HMG20A--AGBL1 BS_W4H1D4Y6 1.41228102897185 -0.590152551463221 NA NA no change no change NA NA 15:77464387 15:86999166 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr15:8.59Mb]],inversion/3'-3' HMG20A NA AGBL1 NA TranscriptionFactor NA NA NA NA -HMG20A--ANKRD34C-AS1 BS_W4H1D4Y6 1.41228102897185 0.0057967910938702 NA NA no change no change NA NA 15:77464387 15:79260846 STARFUSION other 6 6 NA [INTRACHROMOSOMAL[chr15:1.71Mb]] HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA -HMG20A--ANKRD34C-AS1 BS_W4H1D4Y6 1.41228102897185 0.0057967910938702 NA NA no change no change NA NA 15:77464387 15:79192102 STARFUSION other 5 6 NA [INTRACHROMOSOMAL[chr15:1.71Mb]] HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA -HMG20A--ANKRD34C-AS1 BS_W4H1D4Y6 1.41228102897185 0.0057967910938702 NA NA no change no change NA NA 15:77464387 15:79213359 STARFUSION other 3 6 NA [INTRACHROMOSOMAL[chr15:1.71Mb]] HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA -HMG20A--ANKRD34C-AS1 BS_W4H1D4Y6 1.41228102897185 0.0057967910938702 NA NA no change no change NA NA 15:77464387 15:79260846 ARRIBA frameshift 5 6 high [INTRACHROMOSOMAL[chr15:1.71Mb]],inversion HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA -HMG20A--ANKRD34C-AS1 BS_W4H1D4Y6 1.41228102897185 0.0057967910938702 NA NA no change no change NA NA 15:77464387 15:79213359 ARRIBA frameshift 3 3 high [INTRACHROMOSOMAL[chr15:1.71Mb]],inversion HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA -HMG20A--ANKRD34C-AS1 BS_W4H1D4Y6 1.41228102897185 0.0057967910938702 NA NA no change no change NA NA 15:77464387 15:79236928 ARRIBA frameshift 1 5 high [INTRACHROMOSOMAL[chr15:1.71Mb]],inversion HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA -HMG20A--ANKRD34C-AS1 BS_W4H1D4Y6 1.41228102897185 0.0057967910938702 NA NA no change no change NA NA 15:77464387 15:79192102 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr15:1.71Mb]],inversion HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA -HMGB3P23(203747)/RNA5SP281(444651)--ACO1 BS_JB43XBCQ -0.0400103385914836 -0.244817654828338 NA NA no change no change NA NA 9:31848907 9:32405485 ARRIBA other 2 0 medium [],deletion HMGB3P23 RNA5SP281 ACO1 NA NA NA NA NA NA -HMGB3P23(327952)/RNA5SP281(320446)--ACO1 BS_C83TK159 -0.0400103385914836 1.33615218200141 NA NA no change no change NA NA 9:31973112 9:32405485 ARRIBA other 3 0 medium [],deletion HMGB3P23 RNA5SP281 ACO1 NA NA NA NA NA NA -HMGCR--SH3YL1 BS_JGA9BP3A 2.73478039754687 0.399813525648162 NA NA differentially expressed no change NA NA 5:75343964 2:219001 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr5--chr2]],translocation HMGCR NA SH3YL1 NA Oncogene NA NA NA NA -HMMR--BMP4 BS_KBEX4RT2 7.25211590039153 1.34133781441946 NA NA differentially expressed no change NA NA 5:163464802 14:53953400 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr5--chr14]],translocation HMMR NA BMP4 NA NA TumorSuppressorGene NA NA NA -HNRNPD--LIN54 BS_ZF6BSFNF 0.795376711445968 0.519260701498293 NA NA no change no change NA NA 4:82355304 4:82946474 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr4:0.54Mb]],duplication HNRNPD NA LIN54 NA Oncogene TranscriptionFactor NA NA NA -HOPX--SPINK2 BS_68KX6A42 -0.840043031098931 0.347421248121977 NA NA no change no change NA NA 4:56655857 4:56820579 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr4:0.13Mb]],duplication HOPX NA SPINK2 NA TumorSuppressorGene NA NA NA NA -ICA1L--OR7C1 BS_T3DGY9J9 -0.0925718535149208 1.88470932408403 NA NA no change no change NA NA 2:202828848 19:14792431 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr2--chr19]],translocation/5'-5' ICA1L NA OR7C1 NA NA NA NA NA NA -IFNAR1--CTNND2 BS_W4H1D4Y6 5.84405622147196 -2.81395566425319 NA NA differentially expressed differentially expressed NA NA 21:33324573 5:11236823 ARRIBA other 6 3 high [INTERCHROMOSOMAL[chr21--chr5]],translocation/3'-3' IFNAR1 NA CTNND2 NA Oncogene CosmicCensus, Oncogene NA NA NA -IFT74--MOB3B BS_4PPHAQXF 3.96038663423105 -1.47399232774824 NA NA differentially expressed no change NA NA 9:26962087 9:27458256 ARRIBA frameshift 262 114 high [INTRACHROMOSOMAL[chr9:0.26Mb]],deletion/5'-5' IFT74 NA MOB3B NA NA NA NA NA NA -IGF1R--AC091941.1(2678)/AC091912.2(60179) BS_68KX6A42 6.65275541381753 NA NA NA differentially expressed NA NA NA 15:98948708 5:8083439 ARRIBA frameshift 5 1 medium [],translocation IGF1R NA AC091941.1 AC091912.2 Kinase, Oncogene, Kinase NA NA NA NA -IGF1R--ADAMTS17 BS_R7NTZR4C 9.11041642060958 14.6297356965046 NA NA differentially expressed differentially expressed NA NA 15:98708107 15:99976222 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr15:1.01Mb]],inversion IGF1R NA ADAMTS17 NA Kinase, Oncogene, Kinase NA NA NA NA -IGF1R--ADAMTS17 BS_R7NTZR4C 9.11041642060958 14.6297356965046 NA NA differentially expressed differentially expressed NA NA 15:98649676 15:100281401 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:1.01Mb]],inversion IGF1R NA ADAMTS17 NA Kinase, Oncogene, Kinase NA NA NA NA -IGF1R--FAM169B BS_68KX6A42 6.65275541381753 2.33707631339743 NA NA differentially expressed differentially expressed NA NA 15:98891637 15:98520389 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr15:0.10Mb]],inversion IGF1R NA FAM169B NA Kinase, Oncogene, Kinase NA NA NA NA -IGF1R--MEF2A BS_R7NTZR4C 9.11041642060958 6.07453890596805 NA NA differentially expressed differentially expressed NA NA 15:98708107 15:99690241 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr15:0.60Mb]],deletion IGF1R NA MEF2A NA Kinase, Oncogene, Kinase TranscriptionFactor NA NA NA -IGF1R--RNU1-76P(92018)/AC091941.1(7864) BS_68KX6A42 6.65275541381753 NA NA NA differentially expressed NA NA NA 15:98948708 5:8072322 ARRIBA frameshift 6 0 medium [],translocation IGF1R NA RNU1-76P AC091941.1 Kinase, Oncogene, Kinase NA NA NA NA -IGF1R--TTC23 BS_R7NTZR4C 9.11041642060958 13.3792172996008 NA NA differentially expressed differentially expressed NA NA 15:98708107 15:99156297 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:0.17Mb]],inversion IGF1R NA TTC23 NA Kinase, Oncogene, Kinase NA NA NA NA -IGF1R--TTC23 BS_R7NTZR4C 9.11041642060958 13.3792172996008 NA NA differentially expressed differentially expressed NA NA 15:98708107 15:99228732 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr15:0.17Mb]],inversion IGF1R NA TTC23 NA Kinase, Oncogene, Kinase NA NA NA NA -IGF2R--AL133456.1(31067)/AL121885.2(71919) BS_JGA9BP3A 2.95638907803939 NA NA NA differentially expressed NA NA NA 6:159991323 22:27604640 ARRIBA frameshift 180 37 high [],translocation IGF2R NA AL133456.1 AL121885.2 TumorSuppressorGene, Oncogene NA NA NA NA -IGF2R--AL133456.1(8976)/AL121885.2(94010) BS_JGA9BP3A 2.95638907803939 NA NA NA differentially expressed NA NA NA 6:159991323 22:27582549 ARRIBA frameshift 11 0 high [],translocation IGF2R NA AL133456.1 AL121885.2 TumorSuppressorGene, Oncogene NA NA NA NA -IKZF1--AC004830.1 BS_68KX6A42 4.93510161167235 NA NA NA differentially expressed NA NA NA 7:50327757 7:51011781 ARRIBA frameshift 6 2 high [INTRACHROMOSOMAL[chr7:0.46Mb]],deletion IKZF1 NA AC004830.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -IKZF1--AC004830.1 BS_68KX6A42 4.93510161167235 NA NA NA differentially expressed NA NA NA 7:50327757 7:51020972 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:0.46Mb]],deletion IKZF1 NA AC004830.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -IKZF1--AC004830.1 BS_68KX6A42 4.93510161167235 NA NA NA differentially expressed NA NA NA 7:50327757 7:51017393 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr7:0.46Mb]],deletion IKZF1 NA AC004830.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -IKZF1--CFAP69 BS_68KX6A42 4.93510161167235 -0.26300129091769 NA NA differentially expressed no change NA NA 7:50327757 7:90271909 ARRIBA frameshift 4 4 high [INTRACHROMOSOMAL[chr7:39.84Mb]],inversion/3'-3' IKZF1 NA CFAP69 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -IKZF1--CNTNAP2 BS_68KX6A42 4.93510161167235 -1.32260466797957 NA NA differentially expressed no change NA NA 7:50327757 7:148118118 ARRIBA in-frame 2 2 high [INTRACHROMOSOMAL[chr7:95.71Mb]],deletion IKZF1 NA CNTNAP2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA -IKZF1--CNTNAP2 BS_68KX6A42 4.93510161167235 -1.32260466797957 NA NA differentially expressed no change NA NA 7:50327757 7:148014071 ARRIBA frameshift 2 2 high [INTRACHROMOSOMAL[chr7:95.71Mb]],deletion IKZF1 NA CNTNAP2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA -IKZF1--FOXK1 BS_68KX6A42 4.93510161167235 1.79354113115153 NA NA differentially expressed no change NA NA 7:50327757 7:4740838 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:45.53Mb]],duplication IKZF1 NA FOXK1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TranscriptionFactor NA NA NA -IKZF1--GALNT17 BS_68KX6A42 4.93510161167235 NA NA NA differentially expressed NA NA NA 7:50327757 7:71293105 ARRIBA frameshift 15 4 high [INTRACHROMOSOMAL[chr7:20.73Mb]],inversion/3'-3' IKZF1 NA GALNT17 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -IL1RAPL1--UGT1A7 BS_BMMY0H73 1.33719086798364 75.6063233455134 NA NA no change differentially expressed NA NA X:28789425 2:233744439 ARRIBA frameshift 6 2 high [INTERCHROMOSOMAL[chrX--chr2]],translocation/5'-5' IL1RAPL1 NA UGT1A7 NA NA NA NA NA NA -IMMP2L--NAMPT BS_68KX6A42 3.01004673687625 2.42575306473997 NA NA differentially expressed differentially expressed NA NA 7:111561851 7:106271106 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr7:4.38Mb]],inversion/5'-5' IMMP2L NA NAMPT NA NA NA NA NA NA -IPO7--HIPK3 BS_ZD5HN296 2.05832022623958 2.81773191872838 NA NA differentially expressed differentially expressed NA NA 11:9384847 11:33286413 STARFUSION other 5 6 NA [INTRACHROMOSOMAL[chr11:23.81Mb]] IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA -IPO7--HIPK3 BS_ZD5HN296 2.05832022623958 2.81773191872838 NA NA differentially expressed differentially expressed NA NA 11:9392320 11:33286413 STARFUSION other 1 6 NA [INTRACHROMOSOMAL[chr11:23.81Mb]] IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA -IPO7--HIPK3 BS_ZD5HN296 2.05832022623958 2.81773191872838 NA NA differentially expressed differentially expressed NA NA 11:9384847 11:33286413 ARRIBA frameshift 5 6 high [INTRACHROMOSOMAL[chr11:23.81Mb]],deletion IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA -IPO7--HIPK3 BS_ZD5HN296 2.05832022623958 2.81773191872838 NA NA differentially expressed differentially expressed NA NA 11:9392320 11:33286413 ARRIBA frameshift 1 6 high [INTRACHROMOSOMAL[chr11:23.81Mb]],deletion IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA -IRGQ--AC004784.1 BS_RX1YTZ7F 1.10695774792031 NA NA NA no change NA NA NA 19:43594809 19:43041398 ARRIBA frameshift 8 6 high [INTRACHROMOSOMAL[chr19:0.41Mb]],deletion/5'-5' IRGQ NA AC004784.1 NA NA NA NA NA NA -IRGQ--CEACAMP8 BS_RX1YTZ7F 1.10695774792031 59.7676233577629 NA NA no change differentially expressed NA NA 19:43594809 19:43035960 STARFUSION other 50 6 NA [INTRACHROMOSOMAL[chr19:0.54Mb]] IRGQ NA CEACAMP8 NA NA NA NA NA NA -IRGQ--CEACAMP8 BS_RX1YTZ7F 1.10695774792031 59.7676233577629 NA NA no change differentially expressed NA NA 19:43594809 19:43035960 ARRIBA frameshift 49 1 high [INTRACHROMOSOMAL[chr19:0.54Mb]],deletion IRGQ NA CEACAMP8 NA NA NA NA NA NA -ITCH--NCOA6 BS_H97S5SQN 1.17682367273415 0.532438725423803 NA NA no change no change NA NA 20:34363349 20:34736758 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.18Mb]],inversion ITCH NA NCOA6 NA NA Oncogene NA NA NA -ITFG2--ANO2 BS_Z3RCA1T9 2.27283595946951 3.87967563558504 NA NA differentially expressed differentially expressed NA NA 12:2820225 12:5647801 STARFUSION in-frame 16 12 NA [INTRACHROMOSOMAL[chr12:2.67Mb]] ITFG2 NA ANO2 NA NA NA NA NA NA -ITFG2--ANO2 BS_Z3RCA1T9 2.27283595946951 3.87967563558504 NA NA differentially expressed differentially expressed NA NA 12:2824252 12:5647801 STARFUSION other 6 12 NA [INTRACHROMOSOMAL[chr12:2.67Mb]] ITFG2 NA ANO2 NA NA NA NA NA NA -ITFG2--ANO2 BS_Z3RCA1T9 2.27283595946951 3.87967563558504 NA NA differentially expressed differentially expressed NA NA 12:2817950 12:5647801 STARFUSION in-frame 3 12 NA [INTRACHROMOSOMAL[chr12:2.67Mb]] ITFG2 NA ANO2 NA NA NA NA NA NA -ITFG2--ANO2 BS_Z3RCA1T9 2.27283595946951 3.87967563558504 NA NA differentially expressed differentially expressed NA NA 12:2812856 12:5647801 STARFUSION in-frame 3 12 NA [INTRACHROMOSOMAL[chr12:2.67Mb]] ITFG2 NA ANO2 NA NA NA NA NA NA -ITFG2--ANO2 BS_Z3RCA1T9 2.27283595946951 3.87967563558504 NA NA differentially expressed differentially expressed NA NA 12:2820225 12:5647801 ARRIBA in-frame 16 7 high [INTRACHROMOSOMAL[chr12:2.67Mb]],inversion ITFG2 NA ANO2 NA NA NA NA NA NA -ITFG2--ANO2 BS_Z3RCA1T9 2.27283595946951 3.87967563558504 NA NA differentially expressed differentially expressed NA NA 12:2824252 12:5647801 ARRIBA other 6 10 high [INTRACHROMOSOMAL[chr12:2.67Mb]],inversion ITFG2 NA ANO2 NA NA NA NA NA NA -ITFG2--ANO2 BS_Z3RCA1T9 2.27283595946951 3.87967563558504 NA NA differentially expressed differentially expressed NA NA 12:2818277 12:5647801 ARRIBA frameshift 1 4 medium [INTRACHROMOSOMAL[chr12:2.67Mb]],inversion ITFG2 NA ANO2 NA NA NA NA NA NA -ITFG2--ANO2 BS_Z3RCA1T9 2.27283595946951 3.87967563558504 NA NA differentially expressed differentially expressed NA NA 12:2817950 12:5647801 ARRIBA in-frame 3 2 medium [INTRACHROMOSOMAL[chr12:2.67Mb]],inversion ITFG2 NA ANO2 NA NA NA NA NA NA -ITFG2--ANO2 BS_Z3RCA1T9 2.27283595946951 3.87967563558504 NA NA differentially expressed differentially expressed NA NA 12:2812856 12:5647801 ARRIBA in-frame 2 2 medium [INTRACHROMOSOMAL[chr12:2.67Mb]],inversion ITFG2 NA ANO2 NA NA NA NA NA NA -ITGB3--SEPT9 BS_KBEX4RT2 11.3246963632173 2.0667732944679 NA NA differentially expressed differentially expressed NA NA 17:47253940 17:77307141 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr17:29.97Mb]],deletion ITGB3 NA SEPT9 NA TumorSuppressorGene CosmicCensus, Oncogene NA NA NA -ITPR1--LINC01985(78373)/TGFBR2(944) BS_49CJNZ06 0.00353461880386661 NA NA 1.18098350244267 no change NA NA no change 3:4494506 3:30605558 ARRIBA other 19 6 high [],inversion ITPR1 NA LINC01985 TGFBR2 NA NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA -ITPR1--TGFBR2 BS_49CJNZ06 0.00353461880386661 1.18098350244267 NA NA no change no change NA NA 3:4494506 3:30625575 ARRIBA other 8 1 high [INTRACHROMOSOMAL[chr3:25.76Mb]],inversion/3'-3' ITPR1 NA TGFBR2 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -ITPR2--AC025578.1(15483)/AC020637.1(133503) BS_EZ3147MX 3.51752859998957 NA NA NA differentially expressed NA NA NA 12:26398876 12:58410621 ARRIBA frameshift 11 6 high [],duplication ITPR2 NA AC025578.1 AC020637.1 NA NA NA NA NA -JARID2--CAGE1 BS_58YXHGAJ -0.331881199756195 26.3422117936935 NA NA no change differentially expressed NA NA 6:15468718 6:7374131 STARFUSION in-frame 12 4 NA [INTRACHROMOSOMAL[chr6:7.86Mb]] JARID2 NA CAGE1 NA NA Oncogene NA NA NA -JARID2--CAGE1 BS_58YXHGAJ -0.331881199756195 26.3422117936935 NA NA no change differentially expressed NA NA 6:15468718 6:7374131 ARRIBA frameshift 12 4 high [INTRACHROMOSOMAL[chr6:7.86Mb]],inversion JARID2 NA CAGE1 NA NA Oncogene NA NA NA -JARID2--LUADT1 BS_58YXHGAJ -0.331881199756195 NA NA NA no change NA NA NA 6:15374252 6:147126790 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr6:131.64Mb]],deletion JARID2 NA LUADT1 NA NA NA NA NA NA -JARID2--STXBP5-AS1 BS_58YXHGAJ -0.331881199756195 -1.11427519668355 NA NA no change no change NA NA 6:15374252 6:147126790 ARRIBA frameshift 19 4 high [INTRACHROMOSOMAL[chr6:131.32Mb]],deletion/5'-5' JARID2 NA STXBP5-AS1 NA NA NA NA NA NA -JAZF1--AC005165.1 BS_68KX6A42 1.93990729908653 NA NA NA no change NA NA NA 7:28180463 7:25595008 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:2.08Mb]],inversion/5'-5' JAZF1 NA AC005165.1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -JAZF1--AC091705.1(31884)/AC005165.1(10405) BS_68KX6A42 1.93990729908653 NA NA NA no change NA NA NA 7:28180464 7:25582946 ARRIBA frameshift 6 1 medium [],inversion JAZF1 NA AC091705.1 AC005165.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -JAZF1--LINC00838(43693)/RPL23P11(47962) BS_6M2053M0 0.730639826442292 -0.180090319708998 NA -0.0652250785262547 no change no change NA no change 7:28180463 10:33816351 ARRIBA frameshift 3 1 high [],translocation JAZF1 NA LINC00838 RPL23P11 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -JAZF1--MDH2 BS_68KX6A42 1.93990729908653 1.62764616036815 NA NA no change no change NA NA 7:28180463 7:76060373 STARFUSION frameshift 93 28 NA [INTRACHROMOSOMAL[chr7:47.87Mb]] JAZF1 NA MDH2 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -JAZF1--MDH2 BS_68KX6A42 1.93990729908653 1.62764616036815 NA NA no change no change NA NA 7:28180463 7:76060373 ARRIBA frameshift 86 23 high [INTRACHROMOSOMAL[chr7:47.87Mb]],inversion JAZF1 NA MDH2 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -JAZF1--MDH2 BS_68KX6A42 1.93990729908653 1.62764616036815 NA NA no change no change NA NA 7:28180463 7:76063515 ARRIBA frameshift 9 5 medium [INTRACHROMOSOMAL[chr7:47.87Mb]],inversion JAZF1 NA MDH2 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -KAZN--NPHP4 BS_W1385R8Y -2.0770294484521 0.733123603971398 NA NA differentially expressed no change NA NA 1:14180592 1:5902225 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr1:7.90Mb]],duplication/5'-5' KAZN NA NPHP4 NA NA NA NA NA NA -KDR--AC092546.1 BS_GWSJ4Z9H 7.61987514510085 NA NA NA differentially expressed NA NA NA 4:55087607 4:14235515 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:40.84Mb]],inversion KDR NA AC092546.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -KDR--AC098587.1 BS_GWSJ4Z9H 7.61987514510085 NA NA NA differentially expressed NA NA NA 4:55082536 4:54376246 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr4:0.70Mb]],inversion KDR NA AC098587.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -KDR--AC124017.1 BS_GWSJ4Z9H 7.61987514510085 NA NA NA differentially expressed NA NA NA 4:55087607 4:53705811 ARRIBA frameshift 4 2 medium [INTRACHROMOSOMAL[chr4:1.34Mb]],deletion/5'-5' KDR NA AC124017.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -KDR--LINC02283 BS_GWSJ4Z9H 7.61987514510085 NA NA NA differentially expressed NA NA NA 4:55087607 4:54355524 ARRIBA frameshift 2 1 low [INTRACHROMOSOMAL[chr4:0.72Mb]],inversion KDR NA LINC02283 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -KDR--LNX1 BS_GWSJ4Z9H 7.61987514510085 1.06496072900083 NA NA differentially expressed no change NA NA 4:55087607 4:53696139 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:1.38Mb]],deletion KDR NA LNX1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -KDR--NMU BS_GWSJ4Z9H 7.61987514510085 5.95836571269081 NA NA differentially expressed differentially expressed NA NA 4:55087607 4:55605311 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr4:0.47Mb]],inversion/5'-5' KDR NA NMU NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -KIAA0355--AC073534.1(3462100)/ERVK-28(12958) BS_RX1YTZ7F 2.06517643308008 NA NA NA differentially expressed NA NA NA 19:34328151 19:27625525 ARRIBA frameshift 14 2 high [],duplication KIAA0355 NA AC073534.1 ERVK-28 NA NA NA NA NA -KIAA1147--TRGV7 BS_68KX6A42 -0.346863089767241 7.38872400525628 NA NA no change differentially expressed NA NA 7:141686559 7:38335350 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr7:103.32Mb]],deletion KIAA1147 NA TRGV7 NA Oncogene NA NA NA NA -KIAA1147--TRGV8 BS_68KX6A42 -0.346863089767241 8.57861363704236 NA NA no change differentially expressed NA NA 7:141686559 7:38330653 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr7:103.33Mb]],deletion KIAA1147 NA TRGV8 NA Oncogene NA NA NA NA -KIAA1211--FIP1L1 BS_8ZY4GST0 5.15159291914354 2.83595339452186 NA NA differentially expressed differentially expressed NA NA 4:56049299 4:53425872 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr4:2.59Mb]],duplication KIAA1211 NA FIP1L1 NA NA CosmicCensus, Oncogene NA NA NA -KIAA1549--TNRC18 BS_68KX6A42 3.64713423981507 1.05937987438076 NA NA differentially expressed no change NA NA 7:138894342 7:5331488 ARRIBA frameshift 4 3 high [INTRACHROMOSOMAL[chr7:133.41Mb]],inversion/5'-5' KIAA1549 NA TNRC18 NA CosmicCensus, Oncogene NA NA NA NA -KIAA1549--TNRC18 BS_68KX6A42 3.64713423981507 1.05937987438076 NA NA differentially expressed no change NA NA 7:138894342 7:5325248 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:133.41Mb]],deletion KIAA1549 NA TNRC18 NA CosmicCensus, Oncogene NA NA NA NA -KIAA1958--AL353743.1(31814)/PHBP7(17547) BS_5VPM0F36 -0.133055702094793 NA NA -0.035442229821733 no change NA NA no change 9:112487118 9:85881356 ARRIBA other 2 0 medium [],duplication KIAA1958 NA AL353743.1 PHBP7 NA NA NA NA NA -KIF21A--ROS1 BS_PS0P3QJ3 -0.0801314741396671 3.0075970163929 NA NA no change differentially expressed NA NA 12:39319906 6:117320030 STARFUSION in-frame 5 4 NA [INTERCHROMOSOMAL[chr12--chr6]] KIF21A NA ROS1 NA NA CosmicCensus, Oncogene, Kinase NA NA NA -KIF21A--ROS1 BS_PS0P3QJ3 -0.0801314741396671 3.0075970163929 NA NA no change differentially expressed NA NA 12:39319906 6:117320030 ARRIBA in-frame 4 1 high [INTERCHROMOSOMAL[chr12--chr6]],translocation KIF21A NA ROS1 NA NA CosmicCensus, Oncogene, Kinase NA NA NA -KIF21A--ROS1 BS_PS0P3QJ3 -0.0801314741396671 3.0075970163929 NA NA no change differentially expressed NA NA 12:39315932 6:117320030 ARRIBA in-frame 1 3 high [INTERCHROMOSOMAL[chr12--chr6]],translocation KIF21A NA ROS1 NA NA CosmicCensus, Oncogene, Kinase NA NA NA -KIF21A--ROS1 BS_PS0P3QJ3 -0.0801314741396671 3.0075970163929 NA NA no change differentially expressed NA NA 12:39318073 6:117320030 ARRIBA in-frame 2 1 high [INTERCHROMOSOMAL[chr12--chr6]],translocation KIF21A NA ROS1 NA NA CosmicCensus, Oncogene, Kinase NA NA NA -KIF21A--ROS1 BS_PS0P3QJ3 -0.0801314741396671 3.0075970163929 NA NA no change differentially expressed NA NA 12:39322668 6:117320030 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr12--chr6]],translocation KIF21A NA ROS1 NA NA CosmicCensus, Oncogene, Kinase NA NA NA -KIF26B--SMYD3 BS_X0XXN9BK 2.52734189309275 2.19906363456372 NA NA differentially expressed differentially expressed NA NA 1:245156683 1:245863886 ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr1:0.04Mb],LOCAL_INVERSION:+:-:[39911]],inversion KIF26B NA SMYD3 NA NA Oncogene, TranscriptionFactor NA NA TCGAFusion -KIF26B--SMYD3 BS_X0XXN9BK 2.52734189309275 2.19906363456372 NA NA differentially expressed differentially expressed NA NA 1:245156683 1:245929937 ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr1:0.04Mb],LOCAL_INVERSION:+:-:[39911]],inversion KIF26B NA SMYD3 NA NA Oncogene, TranscriptionFactor NA NA TCGAFusion -KIT--KDR BS_GWSJ4Z9H 2.04860543624382 7.61987514510085 NA NA differentially expressed differentially expressed NA NA 4:54658081 4:55115411 ARRIBA in-frame 3 0 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr4:0.34Mb]],inversion KIT NA KDR NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -KLF6--LINC01994 BS_GWSJ4Z9H 4.29512986233626 NA NA NA differentially expressed NA NA NA 10:3784913 3:182471134 ARRIBA frameshift 4 2 medium [INTERCHROMOSOMAL[chr10--chr3]],translocation/5'-5' KLF6 NA LINC01994 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA -KLHL15--UGT1A1 BS_BMMY0H73 1.98317705248468 24.1952547747033 NA NA no change differentially expressed NA NA X:24005989 2:233767034 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A1 NA NA NA NA NA NA -KLHL15--UGT1A1 BS_BMMY0H73 1.98317705248468 24.1952547747033 NA NA no change differentially expressed NA NA X:24005989 2:233767034 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A1 NA NA NA NA NA NA -KLHL15--UGT1A10 BS_BMMY0H73 1.98317705248468 -0.166260111199399 NA NA no change no change NA NA X:24005989 2:233767034 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A10 NA NA NA NA NA NA -KLHL15--UGT1A10 BS_BMMY0H73 1.98317705248468 -0.166260111199399 NA NA no change no change NA NA X:24005989 2:233767034 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A10 NA NA NA NA NA NA -KLHL15--UGT1A3 BS_BMMY0H73 1.98317705248468 107.928158702063 NA NA no change differentially expressed NA NA X:24005989 2:233767034 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A3 NA NA NA NA NA NA -KLHL15--UGT1A3 BS_BMMY0H73 1.98317705248468 107.928158702063 NA NA no change differentially expressed NA NA X:24005989 2:233767034 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A3 NA NA NA NA NA NA -KLHL15--UGT1A4 BS_BMMY0H73 1.98317705248468 18.5395216096894 NA NA no change differentially expressed NA NA X:24005989 2:233767034 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A4 NA NA NA NA NA NA -KLHL15--UGT1A4 BS_BMMY0H73 1.98317705248468 18.5395216096894 NA NA no change differentially expressed NA NA X:24005989 2:233767034 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A4 NA NA NA NA NA NA -KLHL15--UGT1A5 BS_BMMY0H73 1.98317705248468 NA NA NA no change NA NA NA X:24005989 2:233767034 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A5 NA NA NA NA NA NA -KLHL15--UGT1A5 BS_BMMY0H73 1.98317705248468 NA NA NA no change NA NA NA X:24005989 2:233767034 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A5 NA NA NA NA NA NA -KLHL15--UGT1A6 BS_BMMY0H73 1.98317705248468 20.9062938307699 NA NA no change differentially expressed NA NA X:24005989 2:233767034 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A6 NA NA NA NA NA NA -KLHL15--UGT1A6 BS_BMMY0H73 1.98317705248468 20.9062938307699 NA NA no change differentially expressed NA NA X:24005989 2:233767034 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A6 NA NA NA NA NA NA -KLHL15--UGT1A7 BS_BMMY0H73 1.98317705248468 75.6063233455134 NA NA no change differentially expressed NA NA X:24005989 2:233767034 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A7 NA NA NA NA NA NA -KLHL15--UGT1A7 BS_BMMY0H73 1.98317705248468 75.6063233455134 NA NA no change differentially expressed NA NA X:24005989 2:233767034 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A7 NA NA NA NA NA NA -KLHL15--UGT1A8 BS_BMMY0H73 1.98317705248468 108.430506465923 NA NA no change differentially expressed NA NA X:24005989 2:233767034 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A8 NA NA NA NA NA NA -KLHL15--UGT1A8 BS_BMMY0H73 1.98317705248468 108.430506465923 NA NA no change differentially expressed NA NA X:24005989 2:233767034 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A8 NA NA NA NA NA NA -KLHL15--UGT1A9 BS_BMMY0H73 1.98317705248468 -0.124280642387509 NA NA no change no change NA NA X:24005989 2:233767034 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A9 NA NA NA NA NA NA -KLHL15--UGT1A9 BS_BMMY0H73 1.98317705248468 -0.124280642387509 NA NA no change no change NA NA X:24005989 2:233767034 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A9 NA NA NA NA NA NA -KLHL32--SLC22A23 BS_58YXHGAJ 0.115180702462017 0.418203038642542 NA NA no change no change NA NA 6:96925026 6:3324002 STARFUSION other 6 6 NA [INTRACHROMOSOMAL[chr6:93.47Mb]] KLHL32 NA SLC22A23 NA NA Oncogene NA NA NA -KLHL32--SLC22A23 BS_58YXHGAJ 0.115180702462017 0.418203038642542 NA NA no change no change NA NA 6:96925026 6:3298218 STARFUSION other 1 6 NA [INTRACHROMOSOMAL[chr6:93.47Mb]] KLHL32 NA SLC22A23 NA NA Oncogene NA NA NA -KLHL32--SLC22A23 BS_58YXHGAJ 0.115180702462017 0.418203038642542 NA NA no change no change NA NA 6:96925026 6:3324002 ARRIBA other 6 5 high [INTRACHROMOSOMAL[chr6:93.47Mb]],inversion KLHL32 NA SLC22A23 NA NA Oncogene NA NA NA -KLHL32--SLC22A23 BS_58YXHGAJ 0.115180702462017 0.418203038642542 NA NA no change no change NA NA 6:96925026 6:3298218 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr6:93.47Mb]],inversion KLHL32 NA SLC22A23 NA NA Oncogene NA NA NA -KMT2C--CALCR BS_68KX6A42 1.27899555577542 -0.235955194496471 NA NA no change no change NA NA 7:152435626 7:93574506 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr7:58.56Mb]],deletion KMT2C NA CALCR NA TumorSuppressorGene, CosmicCensus, Oncogene Oncogene NA NA NA -KMT2C--SFRP4(76669)/STARD3NL(75858) BS_68KX6A42 1.27899555577542 3.93095561430068 NA 2.07403982766862 no change differentially expressed NA differentially expressed 7:152435626 7:38102364 ARRIBA frameshift 11 3 high [],inversion KMT2C NA SFRP4 STARD3NL TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -KMT2E--RAPGEF5 BS_68KX6A42 0.805427147953998 -0.67342261630769 NA NA no change no change NA NA 7:105014535 7:22315476 STARFUSION other 48 3 NA [INTRACHROMOSOMAL[chr7:82.66Mb]] KMT2E NA RAPGEF5 NA NA NA NA NA NA -KMT2E--RAPGEF5 BS_68KX6A42 0.805427147953998 -0.67342261630769 NA NA no change no change NA NA 7:105014535 7:22315476 ARRIBA other 43 2 high [INTRACHROMOSOMAL[chr7:82.66Mb]],inversion KMT2E NA RAPGEF5 NA NA NA NA NA NA -KMT2E-AS1--C7orf31 BS_68KX6A42 -0.3590849946023 4.59812219751514 NA NA no change differentially expressed NA NA 7:105013501 7:25142814 STARFUSION other 37 3 NA [INTRACHROMOSOMAL[chr7:79.83Mb]] KMT2E-AS1 NA C7orf31 NA NA NA NA NA NA -KMT2E-AS1--C7orf31 BS_68KX6A42 -0.3590849946023 4.59812219751514 NA NA no change differentially expressed NA NA 7:105013881 7:25142814 ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr7:79.83Mb]],deletion KMT2E-AS1 NA C7orf31 NA NA NA NA NA NA -LAMA1--LAMA1 BS_H97S5SQN 0.773639317031945 0.773639317031945 NA NA no change no change NA NA 18:7035987 18:7038950 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA -LAMA4--AL137783.1(11724)/RPL23AP46(92008) BS_58YXHGAJ -0.325634905471774 NA NA -0.0824530029088558 no change NA NA no change 6:112216368 6:132905543 ARRIBA frameshift 7 0 high [],duplication LAMA4 NA AL137783.1 RPL23AP46 NA NA NA NA NA -LAMA4--AL137783.1(55277)/RPL23AP46(48455) BS_58YXHGAJ -0.325634905471774 NA NA -0.0824530029088558 no change NA NA no change 6:112216368 6:132949096 ARRIBA frameshift 12 6 high [],duplication LAMA4 NA AL137783.1 RPL23AP46 NA NA NA NA NA -LARGE1--Z93930.2 BS_JGA9BP3A NA NA NA NA NA NA NA NA 22:33856740 22:28821972 STARFUSION other 10 1 NA [INTRACHROMOSOMAL[chr22:4.31Mb]] LARGE1 NA Z93930.2 NA NA NA NA NA NA -LARGE1--Z93930.2 BS_JGA9BP3A NA NA NA NA NA NA NA NA 22:33856740 22:28821972 ARRIBA other 9 1 high [INTRACHROMOSOMAL[chr22:4.31Mb]],inversion LARGE1 NA Z93930.2 NA NA NA NA NA NA -LARGE1--ZNRF3 BS_JGA9BP3A NA 1.33166982426909 NA NA NA no change NA NA 22:33919995 22:28987076 STARFUSION other 7 8 NA [INTRACHROMOSOMAL[chr22:4.10Mb]] LARGE1 NA ZNRF3 NA NA CosmicCensus NA NA NA -LARGE1--ZNRF3 BS_JGA9BP3A NA 1.33166982426909 NA NA NA no change NA NA 22:33856740 22:28987076 STARFUSION other 3 8 NA [INTRACHROMOSOMAL[chr22:4.10Mb]] LARGE1 NA ZNRF3 NA NA CosmicCensus NA NA NA -LARGE1--ZNRF3 BS_JGA9BP3A NA 1.33166982426909 NA NA NA no change NA NA 22:33919995 22:28987076 ARRIBA other 6 6 high [INTRACHROMOSOMAL[chr22:4.10Mb]],inversion LARGE1 NA ZNRF3 NA NA CosmicCensus NA NA NA -LARGE1--ZNRF3 BS_JGA9BP3A NA 1.33166982426909 NA NA NA no change NA NA 22:33856740 22:28987076 ARRIBA other 3 6 high [INTRACHROMOSOMAL[chr22:4.10Mb]],inversion LARGE1 NA ZNRF3 NA NA CosmicCensus NA NA NA -LARP4B--TCERG1L(270392)/LINC01164(190285) BS_H97S5SQN 0.658241734535496 -0.465703309561521 NA -0.518594851234628 no change no change NA no change 10:829385 10:131582113 ARRIBA frameshift 1 1 high [],duplication LARP4B NA TCERG1L LINC01164 CosmicCensus NA NA NA NA -LCORL--SCFD2 BS_8ZY4GST0 4.2226087994615 4.43285796389504 NA NA differentially expressed differentially expressed NA NA 4:17961903 4:52920870 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr4:34.85Mb]],duplication LCORL NA SCFD2 NA TranscriptionFactor NA NA NA NA -LHFPL3--SGCE BS_68KX6A42 4.02682538331291 4.13185586749522 NA NA differentially expressed differentially expressed NA NA 7:104329224 7:94629841 ARRIBA in-frame 4 1 medium [INTRACHROMOSOMAL[chr7:9.67Mb]],inversion LHFPL3 NA SGCE NA NA NA NA NA NA -LHFPL3--SGCE BS_68KX6A42 4.02682538331291 4.13185586749522 NA NA differentially expressed differentially expressed NA NA 7:104329224 7:94628359 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:9.67Mb]],inversion LHFPL3 NA SGCE NA NA NA NA NA NA -LIN28B--RARS2 BS_58YXHGAJ -0.973527312498847 1.27407612342389 NA NA no change no change NA NA 6:104941012 6:87569590 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr6:17.35Mb]],inversion LIN28B NA RARS2 NA TranscriptionFactor NA NA NA NA -LINC-PINT--EXOC4 BS_ZF6BSFNF -1.25647816320834 1.67781921376301 NA NA no change no change NA NA 7:131107720 7:133630045 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:2.14Mb]],inversion LINC-PINT NA EXOC4 NA TumorSuppressorGene Oncogene NA NA NA -LINC-PINT--EXOC4 BS_ZF6BSFNF -1.25647816320834 1.67781921376301 NA NA no change no change NA NA 7:130945720 7:133475328 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:2.14Mb]],inversion LINC-PINT NA EXOC4 NA TumorSuppressorGene Oncogene NA NA NA -LINC00299--KIDINS220 BS_ZQKGJD70 -0.855870671761968 8.87901951565189 NA NA no change differentially expressed NA NA 2:8324542 2:8793987 STARFUSION other 14 1 NA [INTRACHROMOSOMAL[chr2:0.34Mb]] LINC00299 NA KIDINS220 NA NA NA NA NA NA -LINC00299--KIDINS220 BS_ZQKGJD70 -0.855870671761968 8.87901951565189 NA NA no change differentially expressed NA NA 2:8324542 2:8793987 ARRIBA other 14 2 high [INTRACHROMOSOMAL[chr2:0.34Mb]],duplication LINC00299 NA KIDINS220 NA NA NA NA NA NA -LINC00322(26020)/LINC01679(88)--TMPRSS3 BS_W1385R8Y 1.5621918694889 0.71614782197538 NA NA no change no change NA NA 21:43358059 21:42390037 ARRIBA other 2 3 high [],inversion LINC00322 LINC01679 TMPRSS3 NA NA Oncogene NA NA NA -LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_R7NTZR4C 0.321407839223958 NA NA NA no change NA NA NA 14:38762924 14:38334252 ARRIBA other 1 1 high [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA -LINC00665--ZNF461 BS_RX1YTZ7F 1.47431698231277 2.79427660842897 NA NA no change differentially expressed NA NA 19:36321300 19:36640043 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr19:0.31Mb]],duplication LINC00665 NA ZNF461 NA NA TranscriptionFactor NA NA NA -LINC00957--PTPRN2 BS_68KX6A42 2.2921384644535 -0.456361365247457 NA NA differentially expressed no change NA NA 7:44039986 7:157831387 ARRIBA other 104 50 medium [INTRACHROMOSOMAL[chr7:113.50Mb]],duplication/3'-3' LINC00957 NA PTPRN2 NA NA NA NA NA NA -LINC01004--C7orf31 BS_68KX6A42 -0.0646671688794963 4.59812219751514 NA NA no change differentially expressed NA NA 7:105012932 7:25142814 STARFUSION other 132 41 NA [INTRACHROMOSOMAL[chr7:79.77Mb]] LINC01004 NA C7orf31 NA NA NA NA NA NA -LINC01004--C7orf31 BS_68KX6A42 -0.0646671688794963 4.59812219751514 NA NA no change differentially expressed NA NA 7:105012932 7:25142814 ARRIBA other 124 36 high [INTRACHROMOSOMAL[chr7:79.77Mb]],deletion LINC01004 NA C7orf31 NA NA NA NA NA NA -LINC01004--C7orf31 BS_68KX6A42 -0.0646671688794963 4.59812219751514 NA NA no change differentially expressed NA NA 7:105012932 7:25142332 ARRIBA other 1 4 high [INTRACHROMOSOMAL[chr7:79.77Mb]],deletion LINC01004 NA C7orf31 NA NA NA NA NA NA -LINC01004--C7orf31 BS_68KX6A42 -0.0646671688794963 4.59812219751514 NA NA no change differentially expressed NA NA 7:105012932 7:25136793 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr7:79.77Mb]],deletion LINC01004 NA C7orf31 NA NA NA NA NA NA -LINC01006--UBE3C BS_H97S5SQN 4.37505112426691 0.518690024087098 NA NA differentially expressed no change NA NA 7:156605188 7:157216938 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr7:0.50Mb]],duplication/5'-5' LINC01006 NA UBE3C NA NA NA NA NA NA -LINC01340--LINC02234 BS_4PPHAQXF 3.55956298664761 NA NA NA differentially expressed NA NA NA 5:97670684 5:97881430 STARFUSION other 21 3 NA [INTRACHROMOSOMAL[chr5:0.21Mb]] LINC01340 NA LINC02234 NA NA NA NA NA NA -LINC01697--JAM2 BS_RX1YTZ7F NA 2.53466428466503 NA NA NA differentially expressed NA NA 21:28048537 21:25683883 STARFUSION other 35 3 NA [INTRACHROMOSOMAL[chr21:2.33Mb]] LINC01697 NA JAM2 NA NA NA NA NA NA -LINC01697--JAM2 BS_RX1YTZ7F NA 2.53466428466503 NA NA NA differentially expressed NA NA 21:28048537 21:25683883 ARRIBA other 31 2 high [INTRACHROMOSOMAL[chr21:2.33Mb]],duplication LINC01697 NA JAM2 NA NA NA NA NA NA -LINC01748--LINC01748 BS_0ZA67BBC NA NA NA NA NA NA NA NA 1:60595538 1:60596838 ARRIBA other 2 0 medium [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication LINC01748 NA LINC01748 NA NA NA NA NA NA -LINC02199--SLC12A7 BS_4PPHAQXF NA 1.54545889491905 NA NA NA no change NA NA 5:8835366 5:1075490 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr5:7.73Mb]],deletion/3'-3' LINC02199 NA SLC12A7 NA NA NA NA NA NA -LINC02241--ADCY2 BS_W4H1D4Y6 NA -2.14918724378426 NA NA NA differentially expressed NA NA 5:20660768 5:7690691 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:12.78Mb]],duplication LINC02241 NA ADCY2 NA NA NA NA NA NA -LINC02241--MIR548XHG BS_W4H1D4Y6 NA NA NA NA NA NA NA NA 5:20660768 21:18561691 STARFUSION other 9 2 NA [INTERCHROMOSOMAL[chr5--chr21]] LINC02241 NA MIR548XHG NA NA NA NA NA NA -LINC02241--MIR548XHG BS_W4H1D4Y6 NA NA NA NA NA NA NA NA 5:20660768 21:18570411 ARRIBA other 9 3 high [INTERCHROMOSOMAL[chr5--chr21]],translocation LINC02241 NA MIR548XHG NA NA NA NA NA NA -LINC02241--MIR548XHG BS_W4H1D4Y6 NA NA NA NA NA NA NA NA 5:20660768 21:18561691 ARRIBA other 9 2 high [INTERCHROMOSOMAL[chr5--chr21]],translocation LINC02241 NA MIR548XHG NA NA NA NA NA NA -LINC02302(15101)/DOCK11P1(62386)--AL161752.1 BS_JB43XBCQ NA NA 1.3930356419628 NA NA NA no change NA 14:44797930 14:44393738 ARRIBA other 4 0 medium [],deletion LINC02302 DOCK11P1 AL161752.1 NA NA NA NA NA NA -LINC02449--FAM90A1 BS_21ET39G7 NA -0.213832487077043 NA NA NA no change NA NA 12:8235999 12:8226309 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_INVERSION:+:-:[7797]],duplication/5'-5' LINC02449 NA FAM90A1 NA NA NA NA NA NA -LINGO2--AL360014.1 BS_4PWDGEB0 2.13615534450439 NA NA NA differentially expressed NA NA NA 9:28295208 9:27842611 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr9:0.10Mb]],inversion LINGO2 NA AL360014.1 NA NA NA NA NA NA -LINGO2--MOB3B BS_58YXHGAJ -0.489384957814015 1.4855557391494 NA NA no change no change NA NA 9:28475940 9:27455748 STARFUSION other 8 2 NA [INTRACHROMOSOMAL[chr9:0.42Mb]] LINGO2 NA MOB3B NA NA NA NA NA NA -LINGO2--MOB3B BS_58YXHGAJ -0.489384957814015 1.4855557391494 NA NA no change no change NA NA 9:28475940 9:27455748 ARRIBA other 8 1 high [INTRACHROMOSOMAL[chr9:0.42Mb]],deletion LINGO2 NA MOB3B NA NA NA NA NA NA -LINGO2--RNU2-47P(40301)/TYRP1(344687) BS_4PWDGEB0 2.13615534450439 NA NA 1.52527191500952 differentially expressed NA NA no change 9:28295208 9:12340752 ARRIBA other 3 0 medium [],inversion LINGO2 NA RNU2-47P TYRP1 NA NA NA NA NA -LIPA--ANAPC5 BS_RX1YTZ7F 1.39382336619972 -0.592664676261361 NA NA no change no change NA NA 10:89225092 12:121330672 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr10--chr12]],translocation LIPA NA ANAPC5 NA NA NA NA NA NA -LIPA--RGS2 BS_W1385R8Y -0.612662117450323 0.32732333843925 NA NA no change no change NA NA 10:89215938 1:192811402 STARFUSION in-frame 53 46 NA [INTERCHROMOSOMAL[chr10--chr1]] LIPA NA RGS2 NA NA Oncogene NA NA NA -LIPA--RGS2 BS_W1385R8Y -0.612662117450323 0.32732333843925 NA NA no change no change NA NA 10:89215938 1:192811402 ARRIBA in-frame 43 41 high [INTERCHROMOSOMAL[chr10--chr1]],translocation LIPA NA RGS2 NA NA Oncogene NA NA NA -LMCD1-AS1--GRM7-AS1 BS_NGSG2KB6 2.05657157635551 0.439606746789539 NA NA differentially expressed no change NA NA 3:8494681 3:7520280 ARRIBA other 1 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr3:0.39Mb]],deletion LMCD1-AS1 NA GRM7-AS1 NA NA NA NA NA NA -LMF1--RBFOX1 BS_XZM79E42 -0.359565489147595 -2.03872588780421 NA NA no change differentially expressed NA NA 16:981145 16:5691792 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr16:4.26Mb]],inversion LMF1 NA RBFOX1 NA Oncogene NA NA NA NA -LMO2--LINC02546 BS_ZD5HN296 2.33173763996533 NA NA NA differentially expressed NA NA NA 11:33877791 11:29685382 ARRIBA other 1 5 medium [INTRACHROMOSOMAL[chr11:4.23Mb]],deletion/5'-5' LMO2 NA LINC02546 NA CosmicCensus, Oncogene NA NA NA NA -LNX1--KIT BS_8ZY4GST0 2.42954105442852 1.92423571962442 NA NA differentially expressed no change NA NA 4:53557874 4:54695512 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.96Mb]],inversion LNX1 NA KIT NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -LNX1--KIT BS_8ZY4GST0 2.42954105442852 1.92423571962442 NA NA differentially expressed no change NA NA 4:53476753 4:54723584 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.96Mb]],inversion LNX1 NA KIT NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -LNX1--RNF216 BS_NGSG2KB6 0.647015442192811 0.534589385220346 NA NA no change no change NA NA 4:53496023 7:5652510 ARRIBA in-frame 1 2 high [HGNC_GENEFAM,INTERCHROMOSOMAL[chr4--chr7]],translocation LNX1 NA RNF216 NA NA Oncogene NA NA NA -LPA--QKI BS_JGA9BP3A 18.0189696902466 1.30845731316986 NA NA differentially expressed no change NA NA 6:160622663 6:163455279 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr6:2.75Mb]],inversion LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA -LPA--QKI BS_JGA9BP3A 18.0189696902466 1.30845731316986 NA NA differentially expressed no change NA NA 6:160635123 6:163455279 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr6:2.75Mb]],inversion LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA -LPA--QKI BS_JGA9BP3A 18.0189696902466 1.30845731316986 NA NA differentially expressed no change NA NA 6:160633753 6:163455279 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:2.75Mb]],inversion LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA -LPAL2--QKI BS_JGA9BP3A 0.848563928227571 1.30845731316986 NA NA no change no change NA NA 6:160467542 6:163455277 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr6:2.89Mb]],inversion LPAL2 NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA -LPGAT1--ZNF704 BS_HWGWYCY7 2.87585720912214 -0.649527763405248 NA NA differentially expressed no change NA NA 1:211778918 8:80694308 ARRIBA in-frame 1 2 medium [INTERCHROMOSOMAL[chr1--chr8]],translocation LPGAT1 NA ZNF704 NA NA TranscriptionFactor NA NA NA -LPGAT1--ZNF704 BS_HWGWYCY7 2.87585720912214 -0.649527763405248 NA NA differentially expressed no change NA NA 1:211778918 8:80693107 ARRIBA in-frame 1 1 medium [INTERCHROMOSOMAL[chr1--chr8]],translocation LPGAT1 NA ZNF704 NA NA TranscriptionFactor NA NA NA -LRRC1--ID4(89178)/AL008627.1(112593) BS_58YXHGAJ 1.17646732292873 2.87071856399139 NA NA no change differentially expressed NA NA 6:53908870 6:19929862 ARRIBA other 4 2 medium [],duplication LRRC1 NA ID4 AL008627.1 NA TumorSuppressorGene, Oncogene NA NA NA -LRRC20--ADARB2 BS_EZ3147MX 1.29594176012959 -0.156989288153003 NA NA no change no change NA NA 10:70320058 10:1242299 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:68.56Mb]],inversion/3'-3' LRRC20 NA ADARB2 NA NA Oncogene NA NA NA -LRRIQ3--LRRIQ3 BS_68KX6A42 4.26369935988444 4.26369935988444 NA NA differentially expressed differentially expressed NA NA 1:74183436 1:74183684 ARRIBA in-frame 16 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.17Mb]],duplication/non-canonical_splicing LRRIQ3 NA LRRIQ3 NA NA NA NA NA NA -LRRN3--SLC13A1 BS_68KX6A42 4.0316380700168 2.48642172987385 NA NA differentially expressed differentially expressed NA NA 7:111091504 7:123134529 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:11.99Mb]],inversion LRRN3 NA SLC13A1 NA NA NA NA NA NA -LRRTM3--CTNNA3 BS_W4H1D4Y6 0.645505686892853 0.308765216953495 NA NA no change no change NA NA 10:66928452 10:65988797 ARRIBA frameshift 9 14 medium [ChimerPub,INTRACHROMOSOMAL[chr10:0.17Mb]],inversion LRRTM3 NA CTNNA3 NA NA TumorSuppressorGene NA NA NA -LRRTM3--CTNNA3 BS_W4H1D4Y6 0.645505686892853 0.308765216953495 NA NA no change no change NA NA 10:66926587 10:65988797 ARRIBA frameshift 11 12 medium [ChimerPub,INTRACHROMOSOMAL[chr10:0.17Mb]],inversion LRRTM3 NA CTNNA3 NA NA TumorSuppressorGene NA NA NA -LUZP2--AC109635.5(17303)/AC109635.1(38810) BS_BMMY0H73 2.80467874431022 NA NA NA differentially expressed NA NA NA 11:24738302 11:50207744 ARRIBA frameshift 4 2 high [],deletion LUZP2 NA AC109635.5 AC109635.1 NA NA NA NA NA -LYRM4--SMAP1 BS_58YXHGAJ 0.443796391548666 0.871863541495761 NA NA no change no change NA NA 6:5260648 6:70732378 STARFUSION frameshift 11 1 NA [INTRACHROMOSOMAL[chr6:65.41Mb]] LYRM4 NA SMAP1 NA NA Oncogene NA NA NA -LYRM4--SMAP1 BS_58YXHGAJ 0.443796391548666 0.871863541495761 NA NA no change no change NA NA 6:5260648 6:70732378 ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr6:65.41Mb]],inversion LYRM4 NA SMAP1 NA NA Oncogene NA NA NA -MACF1--TMEM53 BS_W4H1D4Y6 -0.140002936850482 4.49618317077538 NA NA no change differentially expressed NA NA 1:39439500 1:44655209 STARFUSION in-frame 93 89 NA [INTRACHROMOSOMAL[chr1:5.15Mb]] MACF1 NA TMEM53 NA Oncogene NA NA NA NA -MACF1--TMEM53 BS_W4H1D4Y6 -0.140002936850482 4.49618317077538 NA NA no change differentially expressed NA NA 1:39439500 1:44655209 ARRIBA in-frame 88 87 high [INTRACHROMOSOMAL[chr1:5.15Mb]],inversion MACF1 NA TMEM53 NA Oncogene NA NA NA NA -MACF1--TMEM53 BS_W4H1D4Y6 -0.140002936850482 4.49618317077538 NA NA no change differentially expressed NA NA 1:39439500 1:44655119 ARRIBA in-frame 54 56 high [INTRACHROMOSOMAL[chr1:5.15Mb]],inversion MACF1 NA TMEM53 NA Oncogene NA NA NA NA -MACF1--TMEM53 BS_W4H1D4Y6 -0.140002936850482 4.49618317077538 NA NA no change differentially expressed NA NA 1:39439500 1:44645464 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:5.15Mb]],inversion MACF1 NA TMEM53 NA Oncogene NA NA NA NA -MACF1--TMEM53 BS_W4H1D4Y6 -0.140002936850482 4.49618317077538 NA NA no change differentially expressed NA NA 1:39438008 1:44655209 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr1:5.15Mb]],inversion MACF1 NA TMEM53 NA Oncogene NA NA NA NA -MAD1L1--AC003092.2(223647)/COL1A2(93757) BS_JB43XBCQ 0.132686612952958 NA NA -0.704939125646931 no change NA NA no change 7:1940298 7:94300804 ARRIBA other 2 2 medium [],inversion MAD1L1 NA AC003092.2 COL1A2 TumorSuppressorGene, Oncogene NA NA Oncogene NA -MAD1L1--AC092100.1(12175)/Y_RNA(64412) BS_68KX6A42 0.506311098493657 NA NA -0.162236315085263 no change NA NA no change 7:2213212 7:69443098 ARRIBA frameshift 2 1 medium [],duplication MAD1L1 NA AC092100.1 Y_RNA TumorSuppressorGene, Oncogene NA NA NA NA -MAD1L1--PHF2 BS_W1385R8Y 2.66168133149491 1.79259891749038 NA NA differentially expressed no change NA NA 7:1980453 9:93629970 STARFUSION in-frame 22 5 NA [INTERCHROMOSOMAL[chr7--chr9]] MAD1L1 NA PHF2 NA TumorSuppressorGene, Oncogene NA NA NA NA -MAD1L1--PHF2 BS_W1385R8Y 2.66168133149491 1.79259891749038 NA NA differentially expressed no change NA NA 7:1980453 9:93629970 ARRIBA in-frame 21 5 high [INTERCHROMOSOMAL[chr7--chr9]],translocation MAD1L1 NA PHF2 NA TumorSuppressorGene, Oncogene NA NA NA NA -MAD1L1--STEAP2-AS1 BS_H97S5SQN 0.407534323901044 -0.87123876917458 NA NA no change no change NA NA 7:1957629 7:89882555 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:87.65Mb]],duplication MAD1L1 NA STEAP2-AS1 NA TumorSuppressorGene, Oncogene NA NA NA NA -MAFF--POLR2F BS_W4H1D4Y6 0.888091485750855 2.62902047104599 NA NA no change differentially expressed NA NA 22:38202212 22:37956773 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr22:0.16Mb]],duplication MAFF NA POLR2F NA TranscriptionFactor NA NA NA NA -MAGI2--FEZF1 BS_H97S5SQN 1.83442781805369 -0.591235290064746 NA NA no change no change NA NA 7:78343778 7:122303858 ARRIBA frameshift 2 0 high [INTRACHROMOSOMAL[chr7:42.85Mb]],duplication MAGI2 NA FEZF1 NA NA TranscriptionFactor NA NA NA -MAGI2-AS3--VWDE BS_68KX6A42 1.02245902347971 1.02415691474946 NA NA no change no change NA NA 7:79453655 7:12383601 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr7:67.05Mb]],inversion MAGI2-AS3 NA VWDE NA NA NA NA NA NA -MAMLD1--LINC00894 BS_SNVM7CZT 0.337322666469844 -2.84590364600498 NA NA no change differentially expressed NA NA X:150363530 X:150128705 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chrX:0.14Mb]],duplication MAMLD1 NA LINC00894 NA NA NA NA NA NA -MAMLD1--XRCC6P2(94342)/MAMLD1(34184) BS_SNVM7CZT 0.337322666469844 10.4114835993148 NA 0.337322666469844 no change differentially expressed NA no change X:150363530 X:150327238 ARRIBA other 1 1 high [],duplication MAMLD1 NA XRCC6P2 MAMLD1 NA NA NA NA NA -MAP2K4--COX10-AS1 BS_S6Q7NKA3 -0.552818644472167 4.47046066935857 NA NA no change differentially expressed NA NA 17:12034331 17:13960865 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr17:1.61Mb]],inversion MAP2K4 NA COX10-AS1 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA -MARCH1--DCLK2 BS_R9B92M75 3.01457754296407 2.00500433123795 NA NA differentially expressed differentially expressed NA NA 4:163700813 4:150193138 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr4:13.27Mb]],inversion MARCH1 NA DCLK2 NA NA Kinase, Kinase NA NA NA -MARCH6--AC091912.1(103799)/LINC02226(71894) BS_4PPHAQXF 0.570738448498618 NA NA NA no change NA NA NA 5:10353917 5:8261587 ARRIBA frameshift 2 2 high [],duplication MARCH6 NA AC091912.1 LINC02226 NA NA NA NA NA -MARCH6--AC091912.1(145497)/LINC02226(30196) BS_4PPHAQXF 0.570738448498618 NA NA NA no change NA NA NA 5:10353917 5:8303285 ARRIBA frameshift 2 1 medium [],duplication MARCH6 NA AC091912.1 LINC02226 NA NA NA NA NA -MARCH6--AC091912.1(15408)/LINC02226(160285) BS_4PPHAQXF 0.570738448498618 NA NA NA no change NA NA NA 5:10353917 5:8173196 ARRIBA frameshift 124 58 high [],duplication MARCH6 NA AC091912.1 LINC02226 NA NA NA NA NA -MARCH6--AC091912.1(55157)/LINC02226(120536) BS_4PPHAQXF 0.570738448498618 NA NA NA no change NA NA NA 5:10353917 5:8212945 ARRIBA frameshift 5 0 high [],duplication MARCH6 NA AC091912.1 LINC02226 NA NA NA NA NA -MARCH6--AC091912.1(70882)/LINC02226(104811) BS_4PPHAQXF 0.570738448498618 NA NA NA no change NA NA NA 5:10353917 5:8228670 ARRIBA frameshift 5 3 high [],duplication MARCH6 NA AC091912.1 LINC02226 NA NA NA NA NA -MARCH6--AC091912.2(865)/AC091912.1(12892) BS_4PPHAQXF 0.570738448498618 NA NA NA no change NA NA NA 5:10353917 5:8144649 ARRIBA frameshift 4 2 high [],duplication MARCH6 NA AC091912.2 AC091912.1 NA NA NA NA NA -MARCH6--AC091965.1 BS_4PPHAQXF 0.570738448498618 NA NA NA no change NA NA NA 5:10353917 5:8389900 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr5:1.90Mb]],duplication/5'-5' MARCH6 NA AC091965.1 NA NA NA NA NA NA -MARCH6--LINC02226 BS_4PPHAQXF 0.570738448498618 NA NA NA no change NA NA NA 5:10353917 5:8389900 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr5:1.90Mb]],duplication/5'-5' MARCH6 NA LINC02226 NA NA NA NA NA NA -MARCH6--TERT BS_68KX6A42 -0.800468274304093 3.30166949456583 NA NA no change differentially expressed NA NA 5:10426522 5:1262488 ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr5:9.06Mb]],duplication/5'-5' MARCH6 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA -MAT2B--MXD3(322)/LMAN2(18483) BS_KBEX4RT2 0.137951056233346 6.08853103999952 NA 4.73704114806299 no change differentially expressed NA differentially expressed 5:163516829 5:177313079 ARRIBA frameshift 5 1 medium [],inversion MAT2B NA MXD3 LMAN2 NA TranscriptionFactor NA NA NA -MBD5--ZNF516 BS_JB43XBCQ 0.543493524014425 0.987570933093332 NA NA no change no change NA NA 2:148233396 18:76362556 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr2--chr18]],translocation MBD5 NA ZNF516 NA NA TranscriptionFactor NA NA NA -MBP--QKI BS_Z3RCA1T9 -0.0368929033522181 2.64928053722281 NA NA no change differentially expressed NA NA 18:77016832 6:163455279 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr18--chr6]],translocation MBP NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA -MBP--QKI BS_Z3RCA1T9 -0.0368929033522181 2.64928053722281 NA NA no change differentially expressed NA NA 18:76988877 6:163534982 ARRIBA in-frame 1 1 medium [INTERCHROMOSOMAL[chr18--chr6]],translocation MBP NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA -MCF2L2--WWTR1 BS_XZM79E42 -1.88891338206098 2.29093447545152 NA NA no change differentially expressed NA NA 3:183389696 3:149527969 ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chr3:33.44Mb]],deletion MCF2L2 NA WWTR1 NA NA CosmicCensus NA NA NA -MDH2--C7orf65(15557)/HUS1(18525) BS_68KX6A42 1.62764616036815 -0.469881962216695 NA 2.39215768373847 no change no change NA differentially expressed 7:76058078 7:47677205 ARRIBA frameshift 211 57 high [],duplication MDH2 NA C7orf65 HUS1 NA NA NA Oncogene NA -MDN1--EZR-AS1 BS_58YXHGAJ -2.4854807111831 6.83169289507312 NA NA differentially expressed differentially expressed NA NA 6:89683969 6:158818082 STARFUSION other 15 12 NA [INTRACHROMOSOMAL[chr6:69.00Mb]] MDN1 NA EZR-AS1 NA NA NA NA NA NA -MED13L--RILPL1 BS_49CJNZ06 1.49790148300523 1.99574164984335 NA NA no change no change NA NA 12:116277060 12:123499442 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr12:7.19Mb]],inversion/5'-5' MED13L NA RILPL1 NA NA NA NA NA NA -MED15--MYO18B BS_S6Q7NKA3 -0.0284324719359973 8.48364524436338 NA NA no change differentially expressed NA NA 22:20507746 22:25830810 ARRIBA frameshift 12 3 high [INTRACHROMOSOMAL[chr22:5.15Mb]],inversion/3'-3' MED15 NA MYO18B NA NA TumorSuppressorGene NA NA NA -MEF2A--AC087633.2 BS_R7NTZR4C 6.07453890596805 NA NA NA differentially expressed NA NA NA 15:99675458 15:95021044 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:4.40Mb]],duplication MEF2A NA AC087633.2 NA TranscriptionFactor NA NA NA NA -MEF2A--AC087633.2 BS_R7NTZR4C 6.07453890596805 NA NA NA differentially expressed NA NA NA 15:99633173 15:95021044 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:4.40Mb]],duplication MEF2A NA AC087633.2 NA TranscriptionFactor NA NA NA NA -MEF2A--APP BS_3AC3SRWH -2.24032538534251 -1.20186489496666 NA NA differentially expressed no change NA NA 15:99598511 21:25911962 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr15--chr21]],translocation MEF2A NA APP NA TranscriptionFactor NA NA NA NA -MEF2A--CERS3 BS_R7NTZR4C 6.07453890596805 0.952889419954518 NA NA differentially expressed no change NA NA 15:99566104 15:100402865 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.68Mb]],inversion MEF2A NA CERS3 NA TranscriptionFactor NA NA NA NA -MEF2A--CERS3 BS_R7NTZR4C 6.07453890596805 0.952889419954518 NA NA differentially expressed no change NA NA 15:99645764 15:100529075 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:0.68Mb]],inversion MEF2A NA CERS3 NA TranscriptionFactor NA NA NA NA -MEF2A--IGF1R BS_R7NTZR4C 6.07453890596805 9.11041642060958 NA NA differentially expressed differentially expressed NA NA 15:99566104 15:98891325 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr15:0.60Mb]],duplication MEF2A NA IGF1R NA TranscriptionFactor Kinase, Oncogene, Kinase NA NA NA -MEF2A--LRRC28 BS_R7NTZR4C 6.07453890596805 9.28309325193457 NA NA differentially expressed differentially expressed NA NA 15:99598511 15:99386030 ARRIBA other 2 0 medium [CCLE,GTEx,INTRACHROMOSOMAL[chr15:0.17Mb]],duplication MEF2A NA LRRC28 NA TranscriptionFactor NA NA NA TCGAFusion -MEF2A--LRRC28 BS_R7NTZR4C 6.07453890596805 9.28309325193457 NA NA differentially expressed differentially expressed NA NA 15:99598511 15:99333923 ARRIBA other 1 0 low [CCLE,GTEx,INTRACHROMOSOMAL[chr15:0.17Mb]],duplication MEF2A NA LRRC28 NA TranscriptionFactor NA NA NA TCGAFusion -MEF2A--LRRC28 BS_R7NTZR4C 6.07453890596805 9.28309325193457 NA NA differentially expressed differentially expressed NA NA 15:99566104 15:99352369 ARRIBA other 1 0 low [CCLE,GTEx,INTRACHROMOSOMAL[chr15:0.17Mb]],duplication MEF2A NA LRRC28 NA TranscriptionFactor NA NA NA TCGAFusion -MEF2D--AL162591.2(12609)/AL162591.1(10446) BS_BMMY0H73 -0.236544918042292 NA NA NA no change NA NA NA 1:156475108 1:154391882 ARRIBA frameshift 5 0 high [],deletion MEF2D NA AL162591.2 AL162591.1 Oncogene, TranscriptionFactor NA NA NA NA -MEF2D--ATP8B2(13066)/AL162591.2(12593) BS_BMMY0H73 -0.236544918042292 0.595472755632336 NA NA no change no change NA NA 1:156475108 1:154364373 ARRIBA frameshift 8 1 high [],deletion MEF2D NA ATP8B2 AL162591.2 Oncogene, TranscriptionFactor NA NA NA NA -MET--MET BS_68KX6A42 11.1775292156991 11.1775292156991 NA NA differentially expressed differentially expressed NA NA 7:116741025 7:116739950 ARRIBA in-frame 366 66 high [SELFIE,INTRACHROMOSOMAL[chr7:0.13Mb]],duplication/non-canonical_splicing MET NA MET NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -MET--UBE2L3 BS_GWSJ4Z9H 9.19437478015907 4.21385492837669 NA NA differentially expressed differentially expressed NA NA 7:116741025 22:21610857 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr7--chr22]],translocation MET NA UBE2L3 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -METTL9--PHKB BS_W1385R8Y 3.11424990063756 2.04847083543235 NA NA differentially expressed differentially expressed NA NA 16:21625115 16:47619390 ARRIBA frameshift 61 23 high [INTRACHROMOSOMAL[chr16:25.80Mb]],inversion/3'-3' METTL9 NA PHKB NA NA NA NA NA NA -MFAP4--AC005871.1(111626)/AL139121.1(51230) BS_HWGWYCY7 5.34236293293181 NA NA NA differentially expressed NA NA NA 17:19385099 10:117684083 ARRIBA frameshift 4 3 high [],translocation MFAP4 NA AC005871.1 AL139121.1 NA NA NA NA NA -MFAP4--INPP5A BS_HWGWYCY7 5.34236293293181 -1.41457118782224 NA NA differentially expressed no change NA NA 17:19384214 10:132770444 ARRIBA other 9 5 medium [INTERCHROMOSOMAL[chr17--chr10]],translocation MFAP4 NA INPP5A NA NA NA NA NA NA -MFSD14B--RTFDC1 BS_S6Q7NKA3 NA -0.0776299285342888 NA NA NA no change NA NA 9:94446936 20:56513315 STARFUSION in-frame 54 21 NA [INTERCHROMOSOMAL[chr9--chr20]] MFSD14B NA RTFDC1 NA NA NA NA NA NA -MFSD14B--RTFDC1 BS_S6Q7NKA3 NA -0.0776299285342888 NA NA NA no change NA NA 9:94441099 20:56513315 STARFUSION in-frame 21 21 NA [INTERCHROMOSOMAL[chr9--chr20]] MFSD14B NA RTFDC1 NA NA NA NA NA NA -MFSD14B--RTFDC1 BS_S6Q7NKA3 NA -0.0776299285342888 NA NA NA no change NA NA 9:94446936 20:56513315 ARRIBA in-frame 54 19 high [INTERCHROMOSOMAL[chr9--chr20]],translocation MFSD14B NA RTFDC1 NA NA NA NA NA NA -MFSD14B--RTFDC1 BS_S6Q7NKA3 NA -0.0776299285342888 NA NA NA no change NA NA 9:94441099 20:56513315 ARRIBA in-frame 20 4 high [INTERCHROMOSOMAL[chr9--chr20]],translocation MFSD14B NA RTFDC1 NA NA NA NA NA NA -MINPP1--AC012560.1 BS_QKT3TJVK 3.72084629821967 NA NA NA differentially expressed NA NA NA 10:87513221 10:78232558 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr10:8.83Mb]],duplication MINPP1 NA AC012560.1 NA NA NA NA NA NA -MINPP1--LINC00595 BS_QKT3TJVK 3.72084629821967 2.02623914220914 NA NA differentially expressed differentially expressed NA NA 10:87513221 10:78396411 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr10:8.95Mb]],duplication MINPP1 NA LINC00595 NA NA NA NA NA NA -MIOS--CDHR3 BS_68KX6A42 2.84525699380337 1.58524433817356 NA NA differentially expressed no change NA NA 7:7568123 7:106024381 ARRIBA other 61 27 high [INTRACHROMOSOMAL[chr7:98.27Mb]],deletion MIOS NA CDHR3 NA NA NA NA NA NA -MIOS--CDHR3 BS_68KX6A42 2.84525699380337 1.58524433817356 NA NA differentially expressed no change NA NA 7:7568123 7:106028551 ARRIBA other 1 3 high [INTRACHROMOSOMAL[chr7:98.27Mb]],deletion MIOS NA CDHR3 NA NA NA NA NA NA -MIOS--CDHR3 BS_68KX6A42 2.84525699380337 1.58524433817356 NA NA differentially expressed no change NA NA 7:7567072 7:106024381 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr7:98.27Mb]],deletion MIOS NA CDHR3 NA NA NA NA NA NA -MIOS--CDHR3 BS_68KX6A42 2.84525699380337 1.58524433817356 NA NA differentially expressed no change NA NA 7:7567072 7:106028551 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:98.27Mb]],deletion MIOS NA CDHR3 NA NA NA NA NA NA -MIR137HG(4640)/NFU1P2(22497)--SNX7 BS_W7MFJZ5A 1.42905865841621 2.48921002568015 -0.116854613774215 NA no change differentially expressed no change NA 1:98054503 1:98684885 ARRIBA other 2 2 high [],deletion MIR137HG NFU1P2 SNX7 NA NA NA NA NA NA -MIR219A2--C9orf3 BS_1N7MQZGR -0.67737220632421 -0.274466332103216 NA NA no change no change NA NA 9:128393142 9:95086682 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr9:33.31Mb]],inversion MIR219A2 NA C9orf3 NA NA NA NA NA NA -MIR219A2--C9orf3 BS_R9B92M75 0.953697195892645 0.539868074084156 NA NA no change no change NA NA 9:128393142 9:95086682 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr9:33.31Mb]],inversion MIR219A2 NA C9orf3 NA NA NA NA NA NA -MIR219A2--C9orf3 BS_ZQ76ZBEX 2.16511972786303 1.45839996040182 NA NA differentially expressed no change NA NA 9:128393142 9:95086682 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr9:33.31Mb]],inversion MIR219A2 NA C9orf3 NA NA NA NA NA NA -MIR4435-2HG--AC083899.1 BS_W1385R8Y 2.88154827937842 11.9465777504542 NA NA differentially expressed differentially expressed NA NA 2:111344061 2:87125198 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr2:24.00Mb]],inversion MIR4435-2HG NA AC083899.1 NA NA NA NA NA NA -MIR548XHG--CDH18 BS_W4H1D4Y6 NA -1.74914738815675 NA NA NA no change NA NA 21:18737924 5:20572254 ARRIBA other 11 3 high [INTERCHROMOSOMAL[chr21--chr5]],translocation/5'-5' MIR548XHG NA CDH18 NA NA NA NA NA NA -MIR548XHG--LINC02241 BS_W4H1D4Y6 NA NA NA NA NA NA NA NA 21:18737924 5:20572254 ARRIBA other 2 1 high [INTERCHROMOSOMAL[chr21--chr5]],translocation MIR548XHG NA LINC02241 NA NA NA NA NA NA -MKLN1--PODXL BS_ZD5HN296 2.01949109474474 0.895671461227106 NA NA differentially expressed no change NA NA 7:131443702 7:131506726 STARFUSION in-frame 7 3 NA [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_INVERSION:+:-:[3626]] MKLN1 NA PODXL NA NA NA NA NA NA -MKLN1--PODXL BS_ZD5HN296 2.01949109474474 0.895671461227106 NA NA differentially expressed no change NA NA 7:131443702 7:131506726 ARRIBA in-frame 7 3 high [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_INVERSION:+:-:[3626]],inversion MKLN1 NA PODXL NA NA NA NA NA NA -MKLN1--PODXL BS_ZD5HN296 2.01949109474474 0.895671461227106 NA NA differentially expressed no change NA NA 7:131437997 7:131506726 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_INVERSION:+:-:[3626]],inversion MKLN1 NA PODXL NA NA NA NA NA NA -MLC1--BNIP3P6(121719)/CR383656.11(14685) BS_JGA9BP3A -0.994078381366805 NA NA NA no change NA NA NA 22:50068433 14:18540992 ARRIBA frameshift 1 4 high [],translocation MLC1 NA BNIP3P6 CR383656.11 NA NA NA NA NA -MLLT3--PSIP1(11379)/AL513423.1(2178) BS_W7MFJZ5A 1.07075940228733 1.13045273311222 NA NA no change no change NA NA 9:20620654 9:15522398 ARRIBA frameshift 2 0 medium [],deletion MLLT3 NA PSIP1 AL513423.1 CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA -MMD--AC090618.1 BS_PXCPK5XS 0.0936523841882173 NA NA NA no change NA NA NA 17:55411257 17:55842872 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr17:0.42Mb]],duplication MMD NA AC090618.1 NA NA NA NA NA NA -MMP16--AF121898.1 BS_X4DD4KSZ 9.66980704119469 NA NA NA differentially expressed NA NA NA 8:88327075 8:87751317 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr8:0.28Mb]],deletion MMP16 NA AF121898.1 NA NA NA NA NA NA -MMP16--AF121898.1 BS_X4DD4KSZ 9.66980704119469 NA NA NA differentially expressed NA NA NA 8:88056128 8:87542489 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:0.28Mb]],deletion MMP16 NA AF121898.1 NA NA NA NA NA NA -MMP16--CNBD1 BS_Z3RCA1T9 10.0023294443951 -0.241739394025977 NA NA differentially expressed no change NA NA 8:88116507 8:87428546 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr8:0.42Mb]],inversion MMP16 NA CNBD1 NA NA CosmicCensus NA NA NA -MMP16--CNBD1 BS_Z3RCA1T9 10.0023294443951 -0.241739394025977 NA NA differentially expressed no change NA NA 8:88167669 8:87428546 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:0.42Mb]],inversion MMP16 NA CNBD1 NA NA CosmicCensus NA NA NA -MOB3B--PLAA BS_4PPHAQXF -1.47399232774824 1.75754232342508 NA NA no change no change NA NA 9:27455133 9:26935206 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr9:0.38Mb]],deletion MOB3B NA PLAA NA NA NA NA NA NA -MOB3B--PLAA BS_4PPHAQXF -1.47399232774824 1.75754232342508 NA NA no change no change NA NA 9:27455133 9:26947362 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr9:0.38Mb]],deletion MOB3B NA PLAA NA NA NA NA NA NA -MOB3B--SLC24A2 BS_NPA6CZQF 1.54749945600534 0.365367856951163 NA NA no change no change NA NA 9:27455133 9:19528138 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr9:7.54Mb]],deletion MOB3B NA SLC24A2 NA NA NA NA NA NA -MORC3--CBR3 BS_ZQ76ZBEX 0.293361245116363 1.8955670960525 NA NA no change no change NA NA 21:36333718 21:36137825 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr21:0.17Mb]],duplication MORC3 NA CBR3 NA NA NA NA NA NA -MORC3--CBR3 BS_ZQ76ZBEX 0.293361245116363 1.8955670960525 NA NA no change no change NA NA 21:36320303 21:36137825 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr21:0.17Mb]],duplication MORC3 NA CBR3 NA NA NA NA NA NA -MORN4--SNRPGP6(7042)/PNLIPRP3(11350) BS_QKT3TJVK 0.58472741910059 -0.0294627825494395 NA 7.06094836116342 no change no change NA differentially expressed 10:97633347 10:116416517 ARRIBA other 2 2 high [],duplication MORN4 NA SNRPGP6 PNLIPRP3 NA NA NA NA NA -MPP5--NPAS3 BS_JB43XBCQ 0.586882339747847 1.37588095974279 NA NA no change no change NA NA 14:67323812 14:33797457 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr14:33.44Mb]],duplication MPP5 NA NPAS3 NA NA TranscriptionFactor NA NA NA -MPP6--CNTNAP2 BS_68KX6A42 -0.140039492134722 -1.32260466797957 NA NA no change no change NA NA 7:24649764 7:148084580 ARRIBA frameshift 11 5 high [INTRACHROMOSOMAL[chr7:121.42Mb]],inversion/3'-3' MPP6 NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA -MPRIP--DRG2 BS_R7NTZR4C -0.207218068451268 2.75769531498159 NA NA no change differentially expressed NA NA 17:17147387 17:18098270 STARFUSION in-frame 79 11 NA [CCLE,INTRACHROMOSOMAL[chr17:0.87Mb]] MPRIP NA DRG2 NA NA NA NA NA NA -MPRIP--DRG2 BS_R7NTZR4C -0.207218068451268 2.75769531498159 NA NA no change differentially expressed NA NA 17:17147387 17:18098270 ARRIBA in-frame 76 11 high [CCLE,INTRACHROMOSOMAL[chr17:0.87Mb]],deletion MPRIP NA DRG2 NA NA NA NA NA NA -MPRIP--DRG2 BS_R7NTZR4C -0.207218068451268 2.75769531498159 NA NA no change differentially expressed NA NA 17:17147387 17:18100569 ARRIBA in-frame 1 0 low [CCLE,INTRACHROMOSOMAL[chr17:0.87Mb]],deletion MPRIP NA DRG2 NA NA NA NA NA NA -MSI2--AC015813.1 BS_49CJNZ06 1.41236533725795 NA NA NA no change NA NA NA 17:57262192 17:57989796 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr17:0.30Mb]],inversion MSI2 NA AC015813.1 NA CosmicCensus, Oncogene NA NA NA NA -MSI2--AC015813.2 BS_49CJNZ06 1.41236533725795 NA NA NA no change NA NA NA 17:57262192 17:57989796 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr17:0.30Mb]],inversion MSI2 NA AC015813.2 NA CosmicCensus, Oncogene NA NA NA NA -MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_NB9XXBW6 0.399995130385241 -0.650697380270008 -0.162236315085263 NA no change no change no change NA X:11878018 X:12498680 ARRIBA other 1 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA -MTAP--ADAMTSL1 BS_W4H1D4Y6 4.52588858050896 3.13896347666549 NA NA differentially expressed differentially expressed NA NA 9:21854870 9:17956278 ARRIBA frameshift 14 4 high [INTRACHROMOSOMAL[chr9:2.89Mb]],inversion/3'-3' MTAP NA ADAMTSL1 NA TumorSuppressorGene NA NA NA NA -MTMR4--RGS9 BS_6M2053M0 0.207944744600952 0.936244834693733 NA NA no change no change NA NA 17:58511429 17:65153422 STARFUSION frameshift 4 0 NA [INTRACHROMOSOMAL[chr17:6.58Mb]] MTMR4 NA RGS9 NA NA NA NA NA NA -MTMR4--RGS9 BS_6M2053M0 0.207944744600952 0.936244834693733 NA NA no change no change NA NA 17:58511429 17:65153422 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr17:6.58Mb]],inversion MTMR4 NA RGS9 NA NA NA NA NA NA -MTMR4--RGS9 BS_6M2053M0 0.207944744600952 0.936244834693733 NA NA no change no change NA NA 17:58508681 17:65153422 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:6.58Mb]],inversion MTMR4 NA RGS9 NA NA NA NA NA NA -MTRR--GRIK1 BS_W4H1D4Y6 0.768038945445534 -1.59272826270384 NA NA no change no change NA NA 5:7851585 21:29694063 ARRIBA other 1 2 high [INTERCHROMOSOMAL[chr5--chr21]],translocation MTRR NA GRIK1 NA NA NA NA NA NA -MTTP--AL731768.1(75219)/SRIP2(309863) BS_W1385R8Y 6.31611209281164 NA NA NA differentially expressed NA NA NA 4:99591790 X:89057572 ARRIBA frameshift 8 2 high [],translocation MTTP NA AL731768.1 SRIP2 NA NA NA NA NA -MYCBP2--SLAIN1 BS_H97S5SQN 0.951613669428015 1.41524496437231 NA NA no change no change NA NA 13:77326474 13:77719532 ARRIBA in-frame 1 0 low [CCLE,INTRACHROMOSOMAL[chr13:0.37Mb]],inversion MYCBP2 NA SLAIN1 NA NA NA NA NA NA -MYO10--BASP1 BS_1N7MQZGR 2.29861965194876 0.288261071734854 NA NA differentially expressed no change NA NA 5:16741804 5:17275208 ARRIBA other 2 0 low [CCLE,INTRACHROMOSOMAL[chr5:0.13Mb]],inversion MYO10 NA BASP1 NA NA TumorSuppressorGene NA NA NA -MYO10--MIR548XHG BS_W4H1D4Y6 0.9872102141368 NA NA NA no change NA NA NA 5:16935788 21:18738025 STARFUSION other 15 4 NA [INTERCHROMOSOMAL[chr5--chr21]] MYO10 NA MIR548XHG NA NA NA NA NA NA -MYO10--MIR548XHG BS_W4H1D4Y6 0.9872102141368 NA NA NA no change NA NA NA 5:16935788 21:18738025 ARRIBA frameshift 15 4 high [INTERCHROMOSOMAL[chr5--chr21]],translocation MYO10 NA MIR548XHG NA NA NA NA NA NA -MYO10--MIR548XHG(193)/PPIAP22(97583) BS_W4H1D4Y6 0.9872102141368 NA NA 2.34737208656813 no change NA NA differentially expressed 5:16935788 21:18760196 ARRIBA frameshift 6 2 high [],translocation MYO10 NA MIR548XHG PPIAP22 NA NA NA NA NA -MYO18B--LINC02560 BS_JGA9BP3A 8.38839130755515 NA NA NA differentially expressed NA NA NA 22:26004855 19:58400297 STARFUSION other 12 3 NA [INTERCHROMOSOMAL[chr22--chr19]] MYO18B NA LINC02560 NA TumorSuppressorGene NA NA NA NA -MYO18B--LINC02560 BS_JGA9BP3A 8.38839130755515 NA NA NA differentially expressed NA NA NA 22:26004855 19:58400297 ARRIBA frameshift 11 2 high [INTERCHROMOSOMAL[chr22--chr19]],translocation MYO18B NA LINC02560 NA TumorSuppressorGene NA NA NA NA -MYO6--SRSF3(14243)/MIR3925(2593) BS_58YXHGAJ -1.52245102594639 2.92791323477751 NA NA no change differentially expressed NA NA 6:75867105 6:36619843 ARRIBA frameshift 2 0 medium [],inversion MYO6 NA SRSF3 MIR3925 NA CosmicCensus, Oncogene NA NA NA -MYO9A--AC090164.3 BS_68KX6A42 2.52354368058091 NA NA NA differentially expressed NA NA NA 15:71999851 15:101523069 STARFUSION other 22 16 NA [INTRACHROMOSOMAL[chr15:29.40Mb]] MYO9A NA AC090164.3 NA NA NA NA NA NA -MYO9A--AC090164.3 BS_68KX6A42 2.52354368058091 NA NA NA differentially expressed NA NA NA 15:71999851 15:101523069 ARRIBA frameshift 21 13 high [INTRACHROMOSOMAL[chr15:29.40Mb]],duplication MYO9A NA AC090164.3 NA NA NA NA NA NA -MYT1L--IAH1 BS_QKT3TJVK -0.425588162444097 -0.110202052104925 NA NA no change no change NA NA 2:2330967 2:9478222 ARRIBA other 55 20 high [INTRACHROMOSOMAL[chr2:7.14Mb]],inversion MYT1L NA IAH1 NA TranscriptionFactor NA NA NA NA -MYT1L--IAH1 BS_QKT3TJVK -0.425588162444097 -0.110202052104925 NA NA no change no change NA NA 2:2330967 2:9481286 ARRIBA other 1 8 high [INTRACHROMOSOMAL[chr2:7.14Mb]],inversion MYT1L NA IAH1 NA TranscriptionFactor NA NA NA NA -NAALADL2--NLGN1 BS_2JP7RBMB 1.27100676006625 1.85855731675957 NA NA no change no change NA NA 3:174737746 3:173604279 ARRIBA other 1 0 low [CCLE,ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr3:0.15Mb]],duplication NAALADL2 NA NLGN1 NA NA NA NA NA TCGAFusion -NACAD--CBX3(4755)/AC010677.1(58084) BS_68KX6A42 -0.690807680257152 3.57898025182397 NA NA no change differentially expressed NA NA 7:45085848 7:26218111 ARRIBA frameshift 4 2 medium [],deletion NACAD NA CBX3 AC010677.1 NA NA NA NA NA -NAPG--MIR99AHG BS_G3NN392N -2.4313723338633 0.867271597756443 NA NA differentially expressed no change NA NA 18:10550254 21:16071114 ARRIBA frameshift 6 2 high [INTERCHROMOSOMAL[chr18--chr21]],translocation NAPG NA MIR99AHG NA NA NA NA NA NA -NARF--SGF29 BS_21ET39G7 -1.80484525653247 NA NA NA no change NA NA NA 17:82460073 16:28581056 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr17--chr16]],translocation NARF NA SGF29 NA NA NA NA NA NA -NAT10(2932)/ABTB2(386)--ABTB2 BS_JGA9BP3A 1.52244100655771 0.803840977002612 0.803840977002612 NA no change no change no change NA 11:34150602 11:34152559 ARRIBA other 5 1 medium [],duplication NAT10 ABTB2 ABTB2 NA NA Oncogene Oncogene NA NA -NATD1--TTC28 BS_ZD5HN296 1.09145394386909 2.94121388758559 NA NA no change differentially expressed NA NA 17:21241680 22:28366950 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr17--chr22]],translocation/5'-5' NATD1 NA TTC28 NA NA NA NA NA NA -NAV2--NMU(135924)/RNU6-276P(26014) BS_S6Q7NKA3 2.01050334130447 4.93422217563943 NA NA differentially expressed differentially expressed NA NA 11:20078104 4:55772622 ARRIBA frameshift 8 3 high [],translocation NAV2 NA NMU RNU6-276P NA NA NA NA NA -NAV2--SBF2 BS_ZD5HN296 1.46966685640722 1.5357375170206 NA NA no change no change NA NA 11:19351027 11:9785318 ARRIBA in-frame 8 4 high [INTRACHROMOSOMAL[chr11:9.06Mb]],inversion NAV2 NA SBF2 NA NA NA NA NA NA -NBEA--AC023310.4(3015)/NBEAP1(11175) BS_ZF6BSFNF -0.084250446254581 NA NA -0.393354259316685 no change NA NA no change 13:35110978 15:20646463 ARRIBA frameshift 2 0 medium [],translocation NBEA NA AC023310.4 NBEAP1 CosmicCensus NA NA Oncogene NA -NCAM1--ELMOD1 BS_6M2053M0 1.39118454937167 -1.01916869113975 NA NA no change no change NA NA 11:112961664 11:107630417 STARFUSION frameshift 5 5 NA [INTRACHROMOSOMAL[chr11:5.29Mb]] NCAM1 NA ELMOD1 NA NA NA NA NA NA -NCAM1--ELMOD1 BS_6M2053M0 1.39118454937167 -1.01916869113975 NA NA no change no change NA NA 11:112961664 11:107630417 ARRIBA frameshift 5 5 high [INTRACHROMOSOMAL[chr11:5.29Mb]],duplication NCAM1 NA ELMOD1 NA NA NA NA NA NA -NCOA6--ITCH BS_H97S5SQN 0.532438725423803 1.17682367273415 NA NA no change no change NA NA 20:34792450 20:34445287 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.18Mb]],inversion NCOA6 NA ITCH NA Oncogene NA NA NA NA -NCOR2--LINC02041(145796)/SST(73660) BS_BMMY0H73 2.36248438304885 NA NA -1.54219562519574 differentially expressed NA NA no change 12:124362126 3:187595246 ARRIBA frameshift 5 0 high [],translocation NCOR2 NA LINC02041 SST CosmicCensus, Oncogene NA NA NA NA -NDUFA10--RHBDD1 BS_BMMY0H73 -0.312240928623417 3.22561335592925 NA NA no change differentially expressed NA NA 2:240011617 2:226995431 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr2:12.89Mb]],inversion NDUFA10 NA RHBDD1 NA NA NA NA NA NA -NDUFA10--RHBDD1 BS_BMMY0H73 -0.312240928623417 3.22561335592925 NA NA no change differentially expressed NA NA 2:240018553 2:226995431 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:12.89Mb]],inversion NDUFA10 NA RHBDD1 NA NA NA NA NA NA -NDUFA8--MRRF BS_F0JB4EAK -1.07256620820591 -0.581196989676045 NA NA no change no change NA NA 9:122159627 9:122313227 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.10Mb]],inversion NDUFA8 NA MRRF NA NA NA NA NA NA -NDUFA9--GIPR BS_QKT3TJVK 4.78557028768893 1.03940276369606 NA NA differentially expressed no change NA NA 12:4669817 19:45678318 ARRIBA frameshift 17 2 medium [INTERCHROMOSOMAL[chr12--chr19]],translocation/5'-5' NDUFA9 NA GIPR NA NA NA NA NA NA -NDUFA9--TMTC1 BS_ZD5HN296 2.07518304168474 1.03070250093823 NA NA differentially expressed no change NA NA 12:4669817 12:29512120 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr12:24.81Mb]],inversion NDUFA9 NA TMTC1 NA NA NA NA NA NA -NDUFS4--ARL15 BS_QKT3TJVK 0.526819335287922 2.07182352256052 NA NA no change differentially expressed NA NA 5:53560760 5:53886713 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:0.20Mb]],inversion NDUFS4 NA ARL15 NA NA NA NA NA NA -NDUFS4--ARL15 BS_QKT3TJVK 0.526819335287922 2.07182352256052 NA NA no change differentially expressed NA NA 5:53604895 5:53886713 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:0.20Mb]],inversion NDUFS4 NA ARL15 NA NA NA NA NA NA -NEDD4L--MBP BS_R9B92M75 -0.698364074352027 0.758761483861204 NA NA no change no change NA NA 18:58252054 18:76990060 ARRIBA in-frame 1 0 low [GTEx,INTRACHROMOSOMAL[chr18:18.58Mb]],inversion NEDD4L NA MBP NA TumorSuppressorGene NA NA NA NA -NEDD4L--MBP BS_R9B92M75 -0.698364074352027 0.758761483861204 NA NA no change no change NA NA 18:58044708 18:77009926 ARRIBA in-frame 1 0 low [GTEx,INTRACHROMOSOMAL[chr18:18.58Mb]],inversion NEDD4L NA MBP NA TumorSuppressorGene NA NA NA NA -NF1--ACACB BS_T3DGY9J9 -0.542347495671915 -0.648405220463997 NA NA no change no change NA NA 17:31253000 12:109245626 ARRIBA in-frame 9 3 high [INTERCHROMOSOMAL[chr17--chr12]],translocation NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF1--ACACB BS_T3DGY9J9 -0.542347495671915 -0.648405220463997 NA NA no change no change NA NA 17:31249119 12:109245626 ARRIBA in-frame 4 2 high [INTERCHROMOSOMAL[chr17--chr12]],translocation NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--AL031587.6 BS_JGA9BP3A -0.0277482287379935 NA NA NA no change NA NA NA 22:29642285 22:37967099 STARFUSION other 99 23 NA [INTRACHROMOSOMAL[chr22:8.25Mb]] NF2 NA AL031587.6 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--MAPK8IP2(8414)/ARSA(359) BS_JGA9BP3A -0.0277482287379935 -2.38758966026075 NA -0.722629502188629 no change differentially expressed NA no change 22:29661339 22:50622395 ARRIBA frameshift 3 0 high [],deletion NF2 NA MAPK8IP2 ARSA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--POLR2F BS_JGA9BP3A -0.0277482287379935 -0.956777218651411 NA NA no change no change NA NA 22:29642285 22:37967099 STARFUSION frameshift 99 27 NA [INTRACHROMOSOMAL[chr22:8.25Mb]] NF2 NA POLR2F NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--POLR2F BS_JGA9BP3A -0.0277482287379935 -0.956777218651411 NA NA no change no change NA NA 22:29642285 22:37967099 ARRIBA frameshift 99 16 high [INTRACHROMOSOMAL[chr22:8.25Mb]],deletion NF2 NA POLR2F NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NF2--POLR2F BS_JGA9BP3A -0.0277482287379935 -0.956777218651411 NA NA no change no change NA NA 22:29642285 22:38041068 ARRIBA frameshift 1 4 high [INTRACHROMOSOMAL[chr22:8.25Mb]],deletion NF2 NA POLR2F NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -NFATC1--SALL3 BS_XGDPK33A 1.54640967797428 1.8961909131379 NA NA no change no change NA NA 18:79451816 18:78992074 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr18:0.39Mb]],duplication NFATC1 NA SALL3 NA Oncogene, TranscriptionFactor TranscriptionFactor NA NA NA -NFIC--GRIA4 BS_8ZY4GST0 0.391170625949697 1.41725361091806 NA NA no change no change NA NA 19:3463202 11:105752981 STARFUSION other 11 6 NA [INTERCHROMOSOMAL[chr19--chr11]] NFIC NA GRIA4 NA Oncogene, TranscriptionFactor NA NA NA NA -NFIC--GRIA4 BS_8ZY4GST0 0.391170625949697 1.41725361091806 NA NA no change no change NA NA 19:3463202 11:105752981 ARRIBA other 10 6 high [INTERCHROMOSOMAL[chr19--chr11]],translocation NFIC NA GRIA4 NA Oncogene, TranscriptionFactor NA NA NA NA -NFKBID--ACTN4 BS_W4H1D4Y6 1.5184772240444 4.03398841651704 NA NA no change differentially expressed NA NA 19:35895980 19:38700600 STARFUSION in-frame 7 4 NA [INTRACHROMOSOMAL[chr19:2.75Mb]] NFKBID NA ACTN4 NA NA NA NA NA NA -NFKBID--ACTN4 BS_W4H1D4Y6 1.5184772240444 4.03398841651704 NA NA no change differentially expressed NA NA 19:35895980 19:38700600 ARRIBA in-frame 7 4 medium [INTRACHROMOSOMAL[chr19:2.75Mb]],inversion NFKBID NA ACTN4 NA NA NA NA NA NA -NFKBID--URI1 BS_W4H1D4Y6 1.5184772240444 1.73672504115887 NA NA no change no change NA NA 19:35895980 19:29953904 ARRIBA frameshift 31 16 high [INTRACHROMOSOMAL[chr19:5.87Mb]],deletion/5'-5' NFKBID NA URI1 NA NA NA NA NA NA -NLGN1--NAALADL2 BS_2JP7RBMB 1.85855731675957 1.27100676006625 NA NA no change no change NA NA 3:173807832 3:175096790 ARRIBA in-frame 1 0 low [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr3:0.15Mb]],deletion NLGN1 NA NAALADL2 NA NA NA NA NA NA -NOL11--RALGAPA2 BS_S6Q7NKA3 2.36529086916071 6.16637636360407 NA NA differentially expressed differentially expressed NA NA 17:67738355 20:20412148 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr17--chr20]],translocation NOL11 NA RALGAPA2 NA NA NA NA NA NA -NOVA1--ABCA13 BS_H97S5SQN 2.41658673987403 1.52614776078442 NA NA differentially expressed no change NA NA 14:26595410 7:48310757 ARRIBA frameshift 88 16 high [INTERCHROMOSOMAL[chr14--chr7]],translocation/5'-5' NOVA1 NA ABCA13 NA NA NA NA NA NA -NOVA1-AS1--NOVA1 BS_X4DD4KSZ 4.67871761038839 2.20620687516956 NA NA differentially expressed differentially expressed NA NA 14:26779879 14:26480143 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.00Mb],LOCAL_INVERSION:+:-:[658]],inversion NOVA1-AS1 NA NOVA1 NA NA NA NA NA NA -NOVA1-AS1--NOVA1 BS_X4DD4KSZ 4.67871761038839 2.20620687516956 NA NA differentially expressed differentially expressed NA NA 14:26731156 14:26480143 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.00Mb],LOCAL_INVERSION:+:-:[658]],inversion NOVA1-AS1 NA NOVA1 NA NA NA NA NA NA -NPAS3--AC245884.4(27930)/TTYH1(7329) BS_HWGWYCY7 0.351590597834913 NA NA -4.74833522531375 no change NA NA differentially expressed 14:32935003 19:54407890 ARRIBA frameshift 2 0 medium [],translocation NPAS3 NA AC245884.4 TTYH1 TranscriptionFactor NA NA Oncogene NA -NPAS3--TTLL11 BS_S6Q7NKA3 -1.29578922847299 -0.714166307825918 NA NA no change no change NA NA 14:33055994 9:121870748 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr14--chr9]],translocation NPAS3 NA TTLL11 NA TranscriptionFactor NA NA NA NA -NRCAM--CDK14 BS_GWSJ4Z9H 0.355272063677707 0.2780058759602 NA NA no change no change NA NA 7:108312665 7:90692223 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr7:16.94Mb]],deletion/5'-5' NRCAM NA CDK14 NA TumorSuppressorGene, Oncogene Kinase NA NA NA -NREP-AS1(124888)/EPB41L4A(244)--NREP BS_X4DD4KSZ -0.0497862947426981 1.03694840220323 2.51592949380848 NA no change no change differentially expressed NA 5:112142197 5:111735507 ARRIBA other 3 0 medium [],deletion NREP-AS1 EPB41L4A NREP NA NA NA NA NA NA -NTN1--STX8 BS_H97S5SQN 11.5135604599731 5.14576582724774 NA NA differentially expressed differentially expressed NA NA 17:9023391 17:9378653 ARRIBA in-frame 2 0 low [GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr17:0.01Mb],LOCAL_INVERSION:+:-:[6471]],inversion NTN1 NA STX8 NA NA NA NA NA TCGAFusion -NTN1--STX8 BS_H97S5SQN 11.5135604599731 5.14576582724774 NA NA differentially expressed differentially expressed NA NA 17:9023391 17:9505162 ARRIBA frameshift 1 0 low [GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr17:0.01Mb],LOCAL_INVERSION:+:-:[6471]],inversion NTN1 NA STX8 NA NA NA NA NA TCGAFusion -NTN1--STX8 BS_PXCPK5XS 5.54142292337661 1.00573940751632 NA NA differentially expressed no change NA NA 17:9023391 17:9378653 ARRIBA in-frame 2 0 low [GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr17:0.01Mb],LOCAL_INVERSION:+:-:[6471]],inversion NTN1 NA STX8 NA NA NA NA NA TCGAFusion -NTRK2--NTRK2 BS_BMMY0H73 0.836954625198283 0.836954625198283 NA NA no change no change NA NA 9:84752085 9:84744973 ARRIBA in-frame 31 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.36Mb]],duplication/non-canonical_splicing NTRK2 NA NTRK2 NA Oncogene, Kinase Oncogene, Kinase NA NA NA -NUBPL--AKAP6 BS_KBEX4RT2 2.24334099803454 2.36647948092492 NA NA differentially expressed differentially expressed NA NA 14:31565048 14:32821402 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr14:0.47Mb]],deletion NUBPL NA AKAP6 NA NA NA NA NA NA -NUDCD2--ADAMTS2 BS_KBEX4RT2 0.987112495058329 0.913463464117849 NA NA no change no change NA NA 5:163456064 5:179240763 ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr5:15.65Mb]],inversion/5'-5' NUDCD2 NA ADAMTS2 NA NA NA NA NA NA -NUDCD3--VPS41 BS_68KX6A42 0.144550919700139 1.36988989039353 NA NA no change no change NA NA 7:44484968 7:38817882 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:5.45Mb]],deletion NUDCD3 NA VPS41 NA NA NA NA NA NA -NUDT3--CD2AP BS_58YXHGAJ -0.0956607175975111 1.03553454918396 NA NA no change no change NA NA 6:34392264 6:47612473 STARFUSION frameshift 13 8 NA [INTRACHROMOSOMAL[chr6:13.09Mb]] NUDT3 NA CD2AP NA NA NA NA NA NA -NUDT3--CD2AP BS_58YXHGAJ -0.0956607175975111 1.03553454918396 NA NA no change no change NA NA 6:34392264 6:47624186 STARFUSION in-frame 2 8 NA [INTRACHROMOSOMAL[chr6:13.09Mb]] NUDT3 NA CD2AP NA NA NA NA NA NA -NUDT3--CD2AP BS_58YXHGAJ -0.0956607175975111 1.03553454918396 NA NA no change no change NA NA 6:34392264 6:47612473 ARRIBA frameshift 11 7 high [INTRACHROMOSOMAL[chr6:13.09Mb]],inversion NUDT3 NA CD2AP NA NA NA NA NA NA -NUDT3--CD2AP BS_58YXHGAJ -0.0956607175975111 1.03553454918396 NA NA no change no change NA NA 6:34392264 6:47624186 ARRIBA in-frame 2 4 high [INTRACHROMOSOMAL[chr6:13.09Mb]],inversion NUDT3 NA CD2AP NA NA NA NA NA NA -NUFIP2--HNRNPMP2(11041)/AC008622.1(5671) BS_S6Q7NKA3 1.97239942223129 34.6859196988311 NA NA no change differentially expressed NA NA 17:29285992 19:46821224 ARRIBA frameshift 3 2 high [],translocation NUFIP2 NA HNRNPMP2 AC008622.1 NA NA NA NA NA -NUP160--AC023232.1(795)/PTPRJ(74156) BS_XGDPK33A 2.38476051665319 NA NA 4.91581176082518 differentially expressed NA NA differentially expressed 11:47847848 11:47906402 ARRIBA frameshift 22 26 high [],duplication NUP160 NA AC023232.1 PTPRJ NA NA NA TumorSuppressorGene, Oncogene NA -NUP205--AUTS2 BS_68KX6A42 1.91825719459156 0.376743638585233 NA NA no change no change NA NA 7:135557972 7:70335700 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr7:64.76Mb]],inversion/3'-3' NUP205 NA AUTS2 NA NA NA NA NA NA -NUP205--FRA10AC1 BS_NPA6CZQF 1.34494062943426 -0.939865091502679 NA NA no change no change NA NA 7:135598207 10:93670848 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr7--chr10]],translocation NUP205 NA FRA10AC1 NA NA NA NA NA NA -NUP205--LINC01510(39956)/MET(17614) BS_68KX6A42 1.91825719459156 -0.260400966738816 NA 11.1775292156991 no change no change NA differentially expressed 7:135557972 7:116654776 ARRIBA frameshift 86 0 high [],duplication NUP205 NA LINC01510 MET NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA -NUP205--STK17A BS_68KX6A42 1.91825719459156 4.81180058502878 NA NA no change differentially expressed NA NA 7:135557972 7:43608256 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:91.93Mb]],duplication NUP205 NA STK17A NA NA Kinase NA NA NA -NUTM2A-AS1--RNU6-478P(100177)/MARK2P15(143380) BS_QKT3TJVK 1.08030277145197 NA NA 1.98348487989749 no change NA NA no change 10:87288442 10:83168248 ARRIBA other 7 1 high [],deletion NUTM2A-AS1 NA RNU6-478P MARK2P15 NA NA NA NA NA -NXPH1--SRPK2 BS_68KX6A42 3.58864176635001 0.78725562604958 NA NA differentially expressed no change NA NA 7:8435767 7:105169265 ARRIBA frameshift 1 2 low [INTRACHROMOSOMAL[chr7:96.36Mb]],inversion NXPH1 NA SRPK2 NA NA Kinase, Oncogene, Kinase NA NA NA -OIP5-AS1--INO80 BS_ZQ76ZBEX -0.67766617758338 0.622327662062443 NA NA no change no change NA NA 15:41285363 15:41034752 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.17Mb]],duplication/5'-5' OIP5-AS1 NA INO80 NA NA NA NA NA NA -OPHN1--LINC00973 BS_58YXHGAJ 1.89426480552675 -0.388422433620856 NA NA no change no change NA NA X:68432867 3:98982464 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chrX--chr3]],translocation OPHN1 NA LINC00973 NA NA NA NA NA NA -OSBPL3--AC005487.1(24716)/AC002487.1(81625) BS_68KX6A42 2.44513759995731 NA NA NA differentially expressed NA NA NA 7:24892377 7:108638983 ARRIBA frameshift 3 1 high [],inversion OSBPL3 NA AC005487.1 AC002487.1 Oncogene NA NA NA NA -OSBPL7--HNF4G BS_QKT3TJVK -0.241799001544068 2.1788371959715 NA NA no change differentially expressed NA NA 17:47818528 8:75439061 ARRIBA frameshift 23 6 medium [INTERCHROMOSOMAL[chr17--chr8]],translocation/5'-5' OSBPL7 NA HNF4G NA NA TranscriptionFactor NA NA NA -OSTM1--QKI BS_X0XXN9BK 1.74000882161834 0.848223352543639 NA NA no change no change NA NA 6:108074250 6:163534982 STARFUSION in-frame 80 27 NA [INTRACHROMOSOMAL[chr6:55.25Mb]] OSTM1 NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA -OSTM1--QKI BS_X0XXN9BK 1.74000882161834 0.848223352543639 NA NA no change no change NA NA 6:108074250 6:163534982 ARRIBA in-frame 71 24 high [INTRACHROMOSOMAL[chr6:55.25Mb]],inversion OSTM1 NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA -OSTM1--QKI BS_X0XXN9BK 1.74000882161834 0.848223352543639 NA NA no change no change NA NA 6:108165567 6:163534982 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr6:55.25Mb]],inversion OSTM1 NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA -P3H4--AC079791.1(378800)/LINC02476(146607) BS_RX1YTZ7F 1.66189354344263 NA NA NA no change NA NA NA 17:41806147 7:119557949 ARRIBA frameshift 13 20 medium [],translocation P3H4 NA AC079791.1 LINC02476 NA NA NA NA NA -PABPC1--CARSP2(475738)/TRPS1(140829) BS_6M2053M0 2.92117561450522 NA NA 1.43877429447816 differentially expressed NA NA no change 8:100709133 8:115267667 ARRIBA frameshift 4 2 medium [],inversion PABPC1 NA CARSP2 TRPS1 CosmicCensus NA NA TranscriptionFactor NA -PARVB--MIR1202(161775)/SNORD28B(270096) BS_JGA9BP3A -1.48711188883044 NA NA NA no change NA NA NA 22:44119140 6:156108654 ARRIBA frameshift 1 4 high [],translocation PARVB NA MIR1202 SNORD28B Oncogene NA NA NA NA -PARVB--MIR1202(198592)/SNORD28B(233279) BS_JGA9BP3A -1.48711188883044 NA NA NA no change NA NA NA 22:44119140 6:156145471 ARRIBA frameshift 2 0 high [],translocation PARVB NA MIR1202 SNORD28B Oncogene NA NA NA NA -PCGF2--PSMB3 BS_ZQ76ZBEX 1.83195330557504 3.00279496146877 NA NA no change differentially expressed NA NA 17:38747879 17:38762411 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr17:0.00Mb],LOCAL_INVERSION:-:+:[2919]],inversion PCGF2 NA PSMB3 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA -PCGF3--MAML3 BS_H97S5SQN 0.824527189332951 0.605671363155665 NA NA no change no change NA NA 4:744688 4:139890967 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr4:138.95Mb]],inversion PCGF3 NA MAML3 NA NA NA NA NA NA -PCMTD2--LINC01524 BS_X4DD4KSZ 1.70682625385806 4.05822776161187 NA NA no change differentially expressed NA NA 20:64268010 20:52367410 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr20:11.61Mb]],inversion/3'-3' PCMTD2 NA LINC01524 NA NA NA NA NA NA -PDCD4--SMC3 BS_QKT3TJVK 2.44278784915046 5.12034059463742 NA NA differentially expressed differentially expressed NA NA 10:110876070 10:110604231 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:0.27Mb]],duplication PDCD4 NA SMC3 NA TumorSuppressorGene, Oncogene NA NA NA NA -PDCD6--AC122710.3(12730)/LINC02236(3152) BS_W4H1D4Y6 0.558667813889311 NA NA NA no change NA NA NA 5:272772 5:6792728 ARRIBA frameshift 10 0 high [],inversion PDCD6 NA AC122710.3 LINC02236 Oncogene NA NA NA NA -PDCD6--SLC9A3 BS_W4H1D4Y6 0.558667813889311 5.0392218737359 NA NA no change differentially expressed NA NA 5:272772 5:492071 STARFUSION in-frame 6 8 NA [INTRACHROMOSOMAL[chr5:0.12Mb]] PDCD6 NA SLC9A3 NA Oncogene NA NA NA NA -PDCD6--SLC9A3 BS_W4H1D4Y6 0.558667813889311 5.0392218737359 NA NA no change differentially expressed NA NA 5:272772 5:492071 ARRIBA in-frame 6 6 high [INTRACHROMOSOMAL[chr5:0.12Mb]],inversion PDCD6 NA SLC9A3 NA Oncogene NA NA NA NA -PDE1C--AC011294.1(9365)/EPS15P1(12157) BS_68KX6A42 0.957119269874907 NA NA 4.60371220579463 no change NA NA differentially expressed 7:31873292 7:46769216 ARRIBA frameshift 60 27 high [],inversion PDE1C NA AC011294.1 EPS15P1 NA NA NA NA NA -PDE1C--EPS15P1(10968)/AC004870.4(96214) BS_68KX6A42 0.957119269874907 4.60371220579463 NA 3.34093989850754 no change differentially expressed NA differentially expressed 7:31873292 7:46794411 ARRIBA frameshift 73 21 high [],inversion PDE1C NA EPS15P1 AC004870.4 NA NA NA NA NA -PDE4B--DNAJC6 BS_1N7MQZGR 2.58525816386667 0.668890087124145 NA NA differentially expressed no change NA NA 1:65993142 1:65364635 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr1:0.38Mb]],duplication PDE4B NA DNAJC6 NA NA Oncogene NA NA NA -PDE9A--CRYAA(112146)/LINC00322(37466) BS_W1385R8Y 3.66017817641768 2.5281772742612 NA 1.5621918694889 differentially expressed differentially expressed NA no change 21:42733426 21:43284951 ARRIBA frameshift 14 1 high [],deletion PDE9A NA CRYAA LINC00322 NA Oncogene NA NA NA -PDGFRA--FIP1L1 BS_8ZY4GST0 5.69553948095431 2.83595339452186 NA NA differentially expressed differentially expressed NA NA 4:54229415 4:53425872 ARRIBA other 1 0 low [chimerdb_pubmed,ChimerKB,ChimerSeq,ChimerPub,INTRACHROMOSOMAL[chr4:0.77Mb]],duplication PDGFRA NA FIP1L1 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus, Oncogene NA NA NA -PDGFRA--SPATA18(5862)/AC097522.1(337340) BS_2JP7RBMB 2.68333919570016 -0.311082809180393 NA NA differentially expressed no change NA NA 4:54297714 4:52103154 ARRIBA other 12 3 medium [],duplication PDGFRA NA SPATA18 AC097522.1 Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA -PDZD8--RAB11FIP2 BS_BMMY0H73 2.38722684285254 0.511893893028641 NA NA differentially expressed no change NA NA 10:117374356 10:118015110 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr10:0.63Mb]],duplication PDZD8 NA RAB11FIP2 NA NA NA NA NA NA -PDZD8--RAB11FIP2 BS_BMMY0H73 2.38722684285254 0.511893893028641 NA NA differentially expressed no change NA NA 10:117340980 10:118015110 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr10:0.63Mb]],duplication PDZD8 NA RAB11FIP2 NA NA NA NA NA NA -PDZRN4--CACNA1C BS_QKT3TJVK 4.29977965181796 -0.193828607086084 NA NA differentially expressed no change NA NA 12:41194188 12:2549943 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr12:38.49Mb]],duplication PDZRN4 NA CACNA1C NA NA NA NA NA NA -PDZRN4--CACNA1C BS_QKT3TJVK 4.29977965181796 -0.193828607086084 NA NA differentially expressed no change NA NA 12:41194188 12:2547450 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr12:38.49Mb]],duplication PDZRN4 NA CACNA1C NA NA NA NA NA NA -PEAK1--KIAA1024(2893)/AC023968.2(84073) BS_W4H1D4Y6 1.57472310336422 2.6906988996356 NA NA no change differentially expressed NA NA 15:77365163 15:79475183 ARRIBA other 3 1 high [],duplication PEAK1 NA KIAA1024 AC023968.2 Kinase NA NA NA NA -PELI2--KTN1 BS_3AC3SRWH -0.78854484357549 -0.782801969591798 NA NA no change no change NA NA 14:56178464 14:55612019 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr14:0.42Mb]],duplication PELI2 NA KTN1 NA NA CosmicCensus, Oncogene NA NA TCGAFusion -PEX11B--ACP6 BS_BMMY0H73 0.0231762895553615 3.19715921832483 NA NA no change differentially expressed NA NA 1:145916817 1:147650739 ARRIBA frameshift 23 18 high [INTRACHROMOSOMAL[chr1:1.71Mb]],inversion/5'-5' PEX11B NA ACP6 NA NA NA NA NA NA -PEX11B--BCL9 BS_BMMY0H73 0.0231762895553615 1.96896783434634 NA NA no change no change NA NA 1:145913704 1:147625382 ARRIBA other 20 7 medium [INTRACHROMOSOMAL[chr1:1.62Mb]],inversion PEX11B NA BCL9 NA NA CosmicCensus, Oncogene NA NA NA -PEX16--OR5T2(78)/OR5T3(17867) BS_RX1YTZ7F -0.846880744593458 23.823493185496 NA 5.64573589305571 no change differentially expressed NA differentially expressed 11:45917458 11:56234333 ARRIBA frameshift 3 0 medium [],duplication PEX16 NA OR5T2 OR5T3 NA NA NA NA NA -PEX16--OR8J2(11217)/OR5T2(4843) BS_RX1YTZ7F -0.846880744593458 52.1870114010842 NA 23.823493185496 no change differentially expressed NA differentially expressed 11:45917458 11:56226439 ARRIBA frameshift 2 3 high [],duplication PEX16 NA OR8J2 OR5T2 NA NA NA NA NA -PEX5--SLCO1C1 BS_ZD5HN296 0.51856186430416 0.84607160384629 NA NA no change no change NA NA 12:7191700 12:20711386 STARFUSION frameshift 15 13 NA [INTRACHROMOSOMAL[chr12:13.48Mb]] PEX5 NA SLCO1C1 NA NA NA NA NA NA -PEX5--SLCO1C1 BS_ZD5HN296 0.51856186430416 0.84607160384629 NA NA no change no change NA NA 12:7191700 12:20717132 STARFUSION in-frame 11 13 NA [INTRACHROMOSOMAL[chr12:13.48Mb]] PEX5 NA SLCO1C1 NA NA NA NA NA NA -PEX5--SLCO1C1 BS_ZD5HN296 0.51856186430416 0.84607160384629 NA NA no change no change NA NA 12:7191700 12:20711386 ARRIBA frameshift 14 12 high [INTRACHROMOSOMAL[chr12:13.48Mb]],deletion PEX5 NA SLCO1C1 NA NA NA NA NA NA -PEX5--SLCO1C1 BS_ZD5HN296 0.51856186430416 0.84607160384629 NA NA no change no change NA NA 12:7191700 12:20717132 ARRIBA in-frame 11 3 high [INTRACHROMOSOMAL[chr12:13.48Mb]],deletion PEX5 NA SLCO1C1 NA NA NA NA NA NA -PHACTR1--SMAP1 BS_58YXHGAJ 0.637171488677798 0.871863541495761 NA NA no change no change NA NA 6:13289194 6:70674112 ARRIBA other 3 5 medium [INTRACHROMOSOMAL[chr6:57.38Mb]],inversion/3'-3' PHACTR1 NA SMAP1 NA NA Oncogene NA NA NA -PHF14--AC004852.2 BS_S6Q7NKA3 3.84867741444009 NA NA NA differentially expressed NA NA NA 7:10990847 7:9084548 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:1.78Mb]],inversion PHF14 NA AC004852.2 NA NA NA NA NA NA -PIAS1--AC091912.1(70882)/LINC02226(104811) BS_68KX6A42 1.68114964926783 NA NA NA no change NA NA NA 15:68086750 5:8228670 ARRIBA frameshift 2 3 high [],translocation PIAS1 NA AC091912.1 LINC02226 TumorSuppressorGene NA NA NA NA -PIAS1--MARCH6 BS_68KX6A42 1.68114964926783 -0.800468274304093 NA NA no change no change NA NA 15:68086750 5:10377798 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr15--chr5]],translocation PIAS1 NA MARCH6 NA TumorSuppressorGene NA NA NA NA -PIAS1--SENP8 BS_68KX6A42 1.68114964926783 7.19458282259413 NA NA no change differentially expressed NA NA 15:68086750 15:72139577 ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr15:3.92Mb]],deletion PIAS1 NA SENP8 NA TumorSuppressorGene NA NA NA NA -PITPNB--NOP10 BS_W1385R8Y -0.0903226197341815 3.1308843275907 NA NA no change differentially expressed NA NA 22:27910964 15:34342108 ARRIBA frameshift 34 15 high [INTERCHROMOSOMAL[chr22--chr15]],translocation PITPNB NA NOP10 NA NA NA NA NA NA -PKD1L1--VOPP1 BS_68KX6A42 0.687487473154648 1.63593753728591 NA NA no change no change NA NA 7:47811817 7:55497690 ARRIBA frameshift 2 3 high [INTRACHROMOSOMAL[chr7:7.49Mb]],duplication PKD1L1 NA VOPP1 NA NA NA NA NA NA -PKD1L1--VOPP1 BS_68KX6A42 0.687487473154648 1.63593753728591 NA NA no change no change NA NA 7:47815334 7:55497690 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:7.49Mb]],duplication PKD1L1 NA VOPP1 NA NA NA NA NA NA -PLEKHA5--WASHC3 BS_NGSG2KB6 0.587061489677699 NA NA NA no change NA NA NA 12:19132450 12:102026038 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:82.64Mb]],inversion PLEKHA5 NA WASHC3 NA NA NA NA NA NA -PLEKHA5--WASHC3 BS_NGSG2KB6 0.587061489677699 NA NA NA no change NA NA NA 12:19132450 12:102013192 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:82.64Mb]],inversion PLEKHA5 NA WASHC3 NA NA NA NA NA NA -PLEKHG3--FUT8 BS_X4DD4KSZ -0.723842590868619 0.896751435922296 NA NA no change no change NA NA 14:64704704 14:65561337 STARFUSION other 15 3 NA [INTRACHROMOSOMAL[chr14:0.66Mb]] PLEKHG3 NA FUT8 NA NA Oncogene NA NA NA -PLEKHG3--FUT8 BS_X4DD4KSZ -0.723842590868619 0.896751435922296 NA NA no change no change NA NA 14:64704704 14:65561337 ARRIBA other 15 3 high [INTRACHROMOSOMAL[chr14:0.66Mb]],deletion PLEKHG3 NA FUT8 NA NA Oncogene NA NA NA -PLOD3--AC093655.1 BS_68KX6A42 1.88334711507476 NA NA NA no change NA NA NA 7:101215908 7:68150323 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:32.92Mb]],deletion PLOD3 NA AC093655.1 NA NA NA NA NA NA -PLOD3--AC093655.1 BS_68KX6A42 1.88334711507476 NA NA NA no change NA NA NA 7:101215089 7:68150323 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:32.92Mb]],deletion PLOD3 NA AC093655.1 NA NA NA NA NA NA -PLOD3--CLEC2L BS_68KX6A42 1.88334711507476 -1.99083194692297 NA NA no change no change NA NA 7:101212837 7:139525879 ARRIBA frameshift 10 6 medium [INTRACHROMOSOMAL[chr7:38.31Mb]],inversion PLOD3 NA CLEC2L NA NA NA NA NA NA -PLOD3--CLEC2L BS_68KX6A42 1.88334711507476 -1.99083194692297 NA NA no change no change NA NA 7:101215089 7:139536274 ARRIBA in-frame 3 2 medium [INTRACHROMOSOMAL[chr7:38.31Mb]],inversion PLOD3 NA CLEC2L NA NA NA NA NA NA -PLOD3--CLEC2L BS_68KX6A42 1.88334711507476 -1.99083194692297 NA NA no change no change NA NA 7:101215908 7:139536274 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:38.31Mb]],inversion PLOD3 NA CLEC2L NA NA NA NA NA NA -PMS2--EIF2AK1 BS_HWGWYCY7 2.22114467775405 3.69583156006347 NA NA differentially expressed differentially expressed NA NA 7:6002453 7:6048844 ARRIBA in-frame 3 1 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:-:[13119]],duplication PMS2 NA EIF2AK1 NA CosmicCensus, Oncogene Kinase NA NA NA -PMS2P1--AC068205.1 BS_W4H1D4Y6 3.00181869322692 NA NA NA differentially expressed NA NA NA 7:100328836 11:43572806 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr7--chr11]],translocation PMS2P1 NA AC068205.1 NA NA NA NA NA NA -PMS2P1--AL137077.2(42953)/LSM14B(11071) BS_W4H1D4Y6 3.00181869322692 NA NA 1.35942124499719 differentially expressed NA NA no change 7:100325691 20:62111390 ARRIBA other 1 1 medium [],translocation PMS2P1 NA AL137077.2 LSM14B NA NA NA NA NA -PMS2P7--AC093714.2(32183)/Y_RNA(10041) BS_68KX6A42 0.877564875771706 NA NA -0.162236315085263 no change NA NA no change 7:73006806 7:115823232 ARRIBA other 5 0 medium [],deletion PMS2P7 NA AC093714.2 Y_RNA NA NA NA NA NA -PODXL--TRBV5-4(4730)/TRBV6-6(1226) BS_68KX6A42 1.62917822974875 2.23034658188744 NA 1.8183412718725 no change differentially expressed NA no change 7:131556260 7:142468311 ARRIBA frameshift 3 4 high [],duplication PODXL NA TRBV5-4 TRBV6-6 NA NA NA NA NA -PODXL--TRBV7-1(2695)/TRBV4-2(10025) BS_68KX6A42 1.62917822974875 0.886754569774014 NA 2.231532684585 no change no change NA differentially expressed 7:131556260 7:142335396 ARRIBA frameshift 2 1 medium [],duplication PODXL NA TRBV7-1 TRBV4-2 NA NA NA NA NA -POFUT2--YTHDC2(181577)/AC106789.1(279144) BS_RX1YTZ7F 0.354510893305717 0.749906671001884 NA NA no change no change NA NA 21:45285678 5:113776862 ARRIBA frameshift 8 1 high [],translocation POFUT2 NA YTHDC2 AC106789.1 NA NA NA NA NA -POLR2F--AL049612.1(167779)/AL596442.1(184636) BS_JGA9BP3A -0.956777218651411 NA NA NA no change NA NA NA 22:37959476 6:169977881 ARRIBA frameshift 17 5 high [],translocation POLR2F NA AL049612.1 AL596442.1 NA NA NA NA NA -POM121C--AC064862.3(30469)/AC023141.4(84758) BS_68KX6A42 0.985991405917081 NA NA NA no change NA NA NA 7:75417428 7:57685861 ARRIBA other 14 0 low [],deletion POM121C NA AC064862.3 AC023141.4 NA NA NA NA NA -PON2--LINC00689 BS_68KX6A42 1.05335134486634 11.6341671607608 NA NA no change differentially expressed NA NA 7:95424515 7:159009415 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr7:63.57Mb]],duplication/5'-5' PON2 NA LINC00689 NA NA NA NA NA NA -PPARD--PHACTR1 BS_BMMY0H73 1.3236803701185 -0.44697730032675 NA NA no change no change NA NA 6:35347150 6:13053365 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr6:22.05Mb]],duplication PPARD NA PHACTR1 NA Oncogene, TranscriptionFactor NA NA NA NA -PPARD--SLC17A5 BS_58YXHGAJ -1.26256202022375 1.36615661769839 NA NA no change no change NA NA 6:35347150 6:73644603 STARFUSION in-frame 5 6 NA [INTRACHROMOSOMAL[chr6:38.17Mb]] PPARD NA SLC17A5 NA Oncogene, TranscriptionFactor NA NA NA NA -PPARD--SLC17A5 BS_58YXHGAJ -1.26256202022375 1.36615661769839 NA NA no change no change NA NA 6:35347150 6:73641924 STARFUSION frameshift 2 6 NA [INTRACHROMOSOMAL[chr6:38.17Mb]] PPARD NA SLC17A5 NA Oncogene, TranscriptionFactor NA NA NA NA -PPARD--SLC17A5 BS_58YXHGAJ -1.26256202022375 1.36615661769839 NA NA no change no change NA NA 6:35347150 6:73644603 ARRIBA in-frame 5 6 high [INTRACHROMOSOMAL[chr6:38.17Mb]],inversion PPARD NA SLC17A5 NA Oncogene, TranscriptionFactor NA NA NA NA -PPARD--SLC17A5 BS_58YXHGAJ -1.26256202022375 1.36615661769839 NA NA no change no change NA NA 6:35347150 6:73641924 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr6:38.17Mb]],inversion PPARD NA SLC17A5 NA Oncogene, TranscriptionFactor NA NA NA NA -PPDPF--FEZ2 BS_NGSG2KB6 0.722381574960128 1.23673003118476 NA NA no change no change NA NA 20:63521588 2:36578830 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr20--chr2]],translocation PPDPF NA FEZ2 NA NA NA NA NA NA -PPFIA1--PPFIA1 BS_68KX6A42 1.65776555022969 1.65776555022969 NA NA no change no change NA NA 11:70343892 11:70343669 ARRIBA frameshift 18 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr11:0.11Mb]],duplication/non-canonical_splicing PPFIA1 NA PPFIA1 NA NA NA NA NA NA -PPFIBP1--AC006206.2 BS_ZD5HN296 0.535396012349975 NA NA NA no change NA NA NA 12:27682703 12:5358270 ARRIBA frameshift 2 0 high [INTRACHROMOSOMAL[chr12:22.14Mb]],duplication PPFIBP1 NA AC006206.2 NA CosmicCensus, Oncogene NA NA NA NA -PPFIBP1--AC006206.2 BS_ZD5HN296 0.535396012349975 NA NA NA no change NA NA NA 12:27682703 12:5367803 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:22.14Mb]],duplication PPFIBP1 NA AC006206.2 NA CosmicCensus, Oncogene NA NA NA NA -PPM1H--AC025578.1(15483)/AC020637.1(133503) BS_BMMY0H73 -1.69083631455984 NA NA NA no change NA NA NA 12:62832114 12:58410621 ARRIBA frameshift 3 2 high [],deletion PPM1H NA AC025578.1 AC020637.1 NA NA NA NA NA -PPP6R1--DRICH1 BS_JGA9BP3A 0.0153471789896399 -0.84589100335861 NA NA no change no change NA NA 19:55236643 22:23617480 ARRIBA frameshift 41 14 high [INTERCHROMOSOMAL[chr19--chr22]],translocation/5'-5' PPP6R1 NA DRICH1 NA NA NA NA NA NA -PPP6R2--MOV10L1 BS_RX1YTZ7F -1.35154066793147 -0.601173211296147 NA NA no change no change NA NA 22:50372150 22:50099443 STARFUSION other 4 5 NA [CCLE,INTRACHROMOSOMAL[chr22:0.18Mb]] PPP6R2 NA MOV10L1 NA NA NA NA NA NA -PPP6R2--MOV10L1 BS_RX1YTZ7F -1.35154066793147 -0.601173211296147 NA NA no change no change NA NA 22:50372150 22:50099443 ARRIBA other 4 5 high [CCLE,INTRACHROMOSOMAL[chr22:0.18Mb]],duplication PPP6R2 NA MOV10L1 NA NA NA NA NA NA -PRC1--SCAPER BS_W4H1D4Y6 2.35137338553504 -1.56672507010533 NA NA differentially expressed no change NA NA 15:90984018 15:76665789 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr15:14.06Mb]],deletion PRC1 NA SCAPER NA NA NA NA NA NA -PRCC--ASH1L BS_BMMY0H73 1.0673354200485 0.51932845988546 NA NA no change no change NA NA 1:156782329 1:155395553 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:1.19Mb]],inversion PRCC NA ASH1L NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA -PRICKLE1--CDH23 BS_BMMY0H73 2.25832869764866 0.669097068915354 NA NA differentially expressed no change NA NA 12:42567064 10:71473616 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr12--chr10]],translocation/5'-5' PRICKLE1 NA CDH23 NA TumorSuppressorGene NA NA NA NA -PRICKLE1--CDH23-AS1 BS_BMMY0H73 2.25832869764866 NA NA NA differentially expressed NA NA NA 12:42589465 10:71510010 ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr12--chr10]],translocation PRICKLE1 NA CDH23-AS1 NA TumorSuppressorGene NA NA NA NA -PRKCE--LINC01862(20903)/AC243312.1(17292) BS_X0XXN9BK -0.452974141369971 NA NA NA no change NA NA NA 2:46007661 19:8659552 ARRIBA frameshift 2 1 high [],translocation PRKCE NA LINC01862 AC243312.1 TumorSuppressorGene, Kinase NA NA NA NA -PRKCZ--HP1BP3 BS_QKT3TJVK -3.55655851978728 1.62970103467131 NA NA differentially expressed no change NA NA 1:2181718 1:20779530 ARRIBA other 1 3 medium [INTRACHROMOSOMAL[chr1:18.56Mb]],inversion PRKCZ NA HP1BP3 NA Kinase NA NA NA NA -PRKCZ--HP1BP3 BS_QKT3TJVK -3.55655851978728 1.62970103467131 NA NA differentially expressed no change NA NA 1:2175313 1:20776750 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:18.56Mb]],inversion PRKCZ NA HP1BP3 NA Kinase NA NA NA NA -PRKN--QKI BS_PXCPK5XS NA 2.08733469353897 NA NA NA differentially expressed NA NA 6:162727662 6:163561982 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr6:0.69Mb]],inversion PRKN NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA -PROX1--AP001528.1 BS_6M2053M0 0.223172707770476 NA NA NA no change NA NA NA 1:214011715 11:86999876 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr1--chr11]],translocation PROX1 NA AP001528.1 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA -PRR14L--LINC01640(4958)/Z82198.3(15888) BS_JGA9BP3A 1.48613495027715 NA NA NA no change NA NA NA 22:31716036 22:33121252 ARRIBA frameshift 3 1 medium [],inversion PRR14L NA LINC01640 Z82198.3 NA NA NA NA NA -PRR14L--Z82198.3(7863)/LARGE1(17025) BS_JGA9BP3A 1.48613495027715 NA NA NA no change NA NA NA 22:31749993 22:33145201 ARRIBA other 2 0 high [],inversion PRR14L NA Z82198.3 LARGE1 NA NA NA NA NA -PSD3--AC124242.1(30446)/NAT1(43637) BS_6M2053M0 -0.513155977478644 NA NA 3.10727134198733 no change NA NA differentially expressed 8:18572528 8:18126840 ARRIBA frameshift 2 1 high [],inversion PSD3 NA AC124242.1 NAT1 NA NA NA Oncogene NA -PSMC2--RELN BS_ZD5HN296 2.31499275750404 -0.888072623862881 NA NA differentially expressed no change NA NA 7:103364307 7:103523531 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:0.10Mb]],inversion PSMC2 NA RELN NA NA NA NA NA NA -PTEN--AL133232.1(47303)/RNU6-929P(7218) BS_H97S5SQN 0.445370485389077 NA NA NA no change NA NA NA 10:87894109 20:56778763 ARRIBA frameshift 2 0 medium [],translocation PTEN NA AL133232.1 RNU6-929P TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -PTEN--LIPA BS_W1385R8Y 2.7957281701359 -0.612662117450323 NA NA differentially expressed no change NA NA 10:87864624 10:89222582 STARFUSION other 11 9 NA [INTRACHROMOSOMAL[chr10:1.24Mb]] PTEN NA LIPA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -PTEN--LIPA BS_W1385R8Y 2.7957281701359 -0.612662117450323 NA NA differentially expressed no change NA NA 10:87888590 10:89222582 STARFUSION other 11 9 NA [INTRACHROMOSOMAL[chr10:1.24Mb]] PTEN NA LIPA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -PTEN--LIPA BS_W1385R8Y 2.7957281701359 -0.612662117450323 NA NA differentially expressed no change NA NA 10:87888590 10:89222582 ARRIBA other 68 34 high [INTRACHROMOSOMAL[chr10:1.24Mb]],inversion PTEN NA LIPA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -PTGDS--CARNS1 BS_ZQ76ZBEX 0.611043515763397 1.87402968267346 NA NA no change no change NA NA 9:136977692 11:67419487 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr9--chr11]],translocation PTGDS NA CARNS1 NA NA NA NA NA NA -PTGDS--HIP1R BS_R9B92M75 -0.631430803872797 -0.214789975899585 NA NA no change no change NA NA 9:136977692 12:122858102 ARRIBA in-frame 2 1 low [GTEx,ChimerSeq,INTERCHROMOSOMAL[chr9--chr12]],translocation PTGDS NA HIP1R NA NA NA NA NA NA -PTN--AC093813.1(72557)/AC073133.1(96164) BS_68KX6A42 4.26699004286052 NA NA 2.91054713263115 differentially expressed NA NA differentially expressed 7:137314406 7:156336359 ARRIBA other 57 18 high [],inversion PTN NA AC093813.1 AC073133.1 Oncogene NA NA NA NA -PTN--DNAH11 BS_68KX6A42 4.26699004286052 1.69194546460772 NA NA differentially expressed no change NA NA 7:137343439 7:21708855 ARRIBA other 52 22 medium [INTRACHROMOSOMAL[chr7:115.33Mb]],deletion/5'-5' PTN NA DNAH11 NA Oncogene NA NA NA NA -PTN--MET BS_68KX6A42 4.26699004286052 11.1775292156991 NA NA differentially expressed differentially expressed NA NA 7:137343439 7:116699071 STARFUSION other 150 81 NA [INTRACHROMOSOMAL[chr7:20.43Mb]] PTN NA MET NA Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -PTN--MET BS_68KX6A42 4.26699004286052 11.1775292156991 NA NA differentially expressed differentially expressed NA NA 7:137343439 7:116699071 ARRIBA other 138 61 medium [INTRACHROMOSOMAL[chr7:20.43Mb]],inversion PTN NA MET NA Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -PTN--MET BS_68KX6A42 4.26699004286052 11.1775292156991 NA NA differentially expressed differentially expressed NA NA 7:137343439 7:116731668 ARRIBA other 10 5 medium [INTRACHROMOSOMAL[chr7:20.43Mb]],inversion PTN NA MET NA Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -PTPN12--CALN1 BS_68KX6A42 2.24470614008479 -1.29446674506907 NA NA differentially expressed no change NA NA 7:77571186 7:72378301 ARRIBA frameshift 6 2 high [INTRACHROMOSOMAL[chr7:5.09Mb]],inversion PTPN12 NA CALN1 NA TumorSuppressorGene NA NA NA NA -PTPN12--WDR60 BS_68KX6A42 2.24470614008479 0.592457956338058 NA NA differentially expressed no change NA NA 7:77571186 7:158911550 STARFUSION frameshift 52 20 NA [INTRACHROMOSOMAL[chr7:81.22Mb]] PTPN12 NA WDR60 NA TumorSuppressorGene NA NA NA NA -PTPN12--WDR60 BS_68KX6A42 2.24470614008479 0.592457956338058 NA NA differentially expressed no change NA NA 7:77571186 7:158911550 ARRIBA frameshift 50 18 high [INTRACHROMOSOMAL[chr7:81.22Mb]],deletion PTPN12 NA WDR60 NA TumorSuppressorGene NA NA NA NA -PTPN12--WDR60 BS_68KX6A42 2.24470614008479 0.592457956338058 NA NA differentially expressed no change NA NA 7:77537645 7:158911550 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr7:81.22Mb]],deletion PTPN12 NA WDR60 NA TumorSuppressorGene NA NA NA NA -PTPN12--WDR60 BS_68KX6A42 2.24470614008479 0.592457956338058 NA NA differentially expressed no change NA NA 7:77571186 7:158922377 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:81.22Mb]],deletion PTPN12 NA WDR60 NA TumorSuppressorGene NA NA NA NA -PTPRN2--AUTS2 BS_68KX6A42 -0.456361365247457 0.376743638585233 NA NA no change no change NA NA 7:157682725 7:70644144 ARRIBA frameshift 10 4 high [INTRACHROMOSOMAL[chr7:86.75Mb]],deletion/5'-5' PTPRN2 NA AUTS2 NA NA NA NA NA NA -PTPRN2--GNA12 BS_68KX6A42 -0.456361365247457 1.46311673578503 NA NA no change no change NA NA 7:158192327 7:2795143 ARRIBA in-frame 4 3 medium [INTRACHROMOSOMAL[chr7:154.69Mb]],deletion PTPRN2 NA GNA12 NA NA Oncogene NA NA NA -PTPRN2--GNA12 BS_68KX6A42 -0.456361365247457 1.46311673578503 NA NA no change no change NA NA 7:158205171 7:2795143 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr7:154.69Mb]],deletion PTPRN2 NA GNA12 NA NA Oncogene NA NA NA -PTPRN2--ZNF786 BS_68KX6A42 -0.456361365247457 2.22119322799995 NA NA no change differentially expressed NA NA 7:157682725 7:149080717 ARRIBA in-frame 12 2 high [INTRACHROMOSOMAL[chr7:8.45Mb]],deletion PTPRN2 NA ZNF786 NA NA TranscriptionFactor NA NA NA -PTPRN2--ZNF786 BS_68KX6A42 -0.456361365247457 2.22119322799995 NA NA no change differentially expressed NA NA 7:157682725 7:149074538 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr7:8.45Mb]],deletion PTPRN2 NA ZNF786 NA NA TranscriptionFactor NA NA NA -PTPRS--AP000282.1 BS_W4H1D4Y6 3.77742760462043 NA NA NA differentially expressed NA NA NA 19:5273442 21:33030685 ARRIBA frameshift 349 107 high [INTERCHROMOSOMAL[chr19--chr21]],translocation PTPRS NA AP000282.1 NA NA NA NA NA NA -PTPRS--SLC12A7 BS_W4H1D4Y6 3.77742760462043 2.85137239279467 NA NA differentially expressed differentially expressed NA NA 19:5273442 5:1060177 ARRIBA frameshift 7 0 medium [INTERCHROMOSOMAL[chr19--chr5]],translocation/5'-5' PTPRS NA SLC12A7 NA NA NA NA NA NA -PTPRS--SLC6A3 BS_W4H1D4Y6 3.77742760462043 -0.258038939045862 NA NA differentially expressed no change NA NA 19:5273442 5:1409849 STARFUSION frameshift 6 4 NA [INTERCHROMOSOMAL[chr19--chr5]] PTPRS NA SLC6A3 NA NA Oncogene NA NA NA -PTPRS--SLC6A3 BS_W4H1D4Y6 3.77742760462043 -0.258038939045862 NA NA differentially expressed no change NA NA 19:5273442 5:1409849 ARRIBA frameshift 6 4 medium [INTERCHROMOSOMAL[chr19--chr5]],translocation PTPRS NA SLC6A3 NA NA Oncogene NA NA NA -PTPRT--NLGN1 BS_X0XXN9BK -0.468068521274688 -1.24932337554958 NA NA no change no change NA NA 20:42282489 3:173892573 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr20--chr3]],translocation/5'-5' PTPRT NA NLGN1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA -PTPRZ1--LINC01510(39956)/MET(17614) BS_QKT3TJVK 2.92979247075843 1.59820248352773 NA 0.575844247366767 differentially expressed no change NA no change 7:121873557 7:116654776 ARRIBA frameshift 4 0 medium [],duplication PTPRZ1 NA LINC01510 MET NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA -PVT1--CCDC26 BS_Z3RCA1T9 2.98630375359924 19.0360789399387 NA NA differentially expressed differentially expressed NA NA 8:127939676 8:129399684 ARRIBA other 1 1 low [CCLE,INTRACHROMOSOMAL[chr8:1.25Mb]],inversion PVT1 NA CCDC26 NA Oncogene NA NA NA NA -PVT1--RN7SKP93(473791)/MGAT5(49793) BS_JQVAWTTM 2.04759333062714 NA NA -0.81195310768682 differentially expressed NA NA no change 8:127796008 2:134070190 ARRIBA other 2 0 medium [],translocation PVT1 NA RN7SKP93 MGAT5 Oncogene NA NA NA NA -QKI--PRKN BS_49CJNZ06 1.23090402034054 NA NA NA no change NA NA NA 6:163478896 6:161959131 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr6:0.69Mb]],duplication/5'-5' QKI NA PRKN NA TumorSuppressorGene, CosmicCensus NA NA NA NA -RAB11A--MEGF11 BS_RX1YTZ7F 1.70424334653301 2.0518355232666 NA NA no change differentially expressed NA NA 15:65869625 15:66128411 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_INVERSION:+:-:[3088]],inversion RAB11A NA MEGF11 NA NA NA NA NA NA -RAB11FIP3--ATF7IP BS_GWSJ4Z9H 0.129953091902114 2.7748355287098 NA NA no change differentially expressed NA NA 16:471387 12:14423907 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr16--chr12]],translocation RAB11FIP3 NA ATF7IP NA NA Oncogene NA NA NA -RAB5B--AC023055.1 BS_BMMY0H73 1.9703257864025 NA NA NA no change NA NA NA 12:55974139 12:55760640 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr12:0.15Mb]],inversion RAB5B NA AC023055.1 NA NA NA NA NA NA -RAB5B--SARNP BS_BMMY0H73 1.9703257864025 0.897898099030378 NA NA no change no change NA NA 12:55974139 12:55760640 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr12:0.16Mb]],inversion RAB5B NA SARNP NA NA Oncogene NA NA NA -RAD50--NOM1 BS_Z3RCA1T9 2.09057169156615 1.54582668241159 NA NA differentially expressed no change NA NA 5:132579502 7:156963905 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr5--chr7]],translocation RAD50 NA NOM1 NA NA NA NA NA NA -RAF1--TMEM40 BS_G3NN392N -0.753213954740886 17.7575194105068 NA NA no change differentially expressed NA NA 3:12590798 3:12763836 ARRIBA in-frame 4 6 high [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr3:0.07Mb],LOCAL_REARRANGEMENT:-:[69299]],duplication RAF1 NA TMEM40 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA TCGAFusion -RAF1--TMEM40 BS_G3NN392N -0.753213954740886 17.7575194105068 NA NA no change differentially expressed NA NA 3:12590798 3:12749840 ARRIBA frameshift 1 2 high [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr3:0.07Mb],LOCAL_REARRANGEMENT:-:[69299]],duplication RAF1 NA TMEM40 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA TCGAFusion -RALA--KMT2C BS_68KX6A42 3.15357778199619 1.27899555577542 NA NA differentially expressed no change NA NA 7:39623825 7:152330335 ARRIBA other 15 3 high [INTRACHROMOSOMAL[chr7:112.43Mb]],deletion/5'-5' RALA NA KMT2C NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -RANBP17--EBF1 BS_KBEX4RT2 1.91196618661283 -0.378806849327628 NA NA no change no change NA NA 5:171241078 5:158737537 ARRIBA frameshift 3 5 medium [INTRACHROMOSOMAL[chr5:11.76Mb]],duplication/5'-5' RANBP17 NA EBF1 NA Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA -RAPGEF5--AC130710.1 BS_ZQKGJD70 -0.765327905069168 NA NA NA no change NA NA NA 7:22219866 2:16097577 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr7--chr2]],translocation RAPGEF5 NA AC130710.1 NA NA NA NA NA NA -RAPGEF5--AC130710.1 BS_ZQKGJD70 -0.765327905069168 NA NA NA no change NA NA NA 7:22219866 2:16097462 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr7--chr2]],translocation RAPGEF5 NA AC130710.1 NA NA NA NA NA NA -RAPGEF5--AC130710.1 BS_ZQKGJD70 -0.765327905069168 NA NA NA no change NA NA NA 7:22219866 2:16085483 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr7--chr2]],translocation RAPGEF5 NA AC130710.1 NA NA NA NA NA NA -RBBP8--HNRNPH1 BS_NGSG2KB6 2.41478776328128 0.530258563518975 NA NA differentially expressed no change NA NA 18:22798487 5:179623164 ARRIBA other 2 0 low [GTEx,INTERCHROMOSOMAL[chr18--chr5]],translocation RBBP8 NA HNRNPH1 NA TumorSuppressorGene, Oncogene NA NA NA NA -RBFOX2--IGL-@ BS_JGA9BP3A 0.476311105893857 NA NA NA no change NA NA NA 22:36028240 22:22900976 STARFUSION other 27 20 NA [INTRACHROMOSOMAL[chr22:12.82Mb]] RBFOX2 NA IGL-@ NA NA NA NA NA NA -RBFOX2--IGL-@ BS_JGA9BP3A 0.476311105893857 NA NA NA no change NA NA NA 22:36027052 22:22900976 STARFUSION other 14 20 NA [INTRACHROMOSOMAL[chr22:12.82Mb]] RBFOX2 NA IGL-@ NA NA NA NA NA NA -RBFOX2--IGL@ BS_JGA9BP3A 0.476311105893857 NA NA NA no change NA NA NA 22:36028240 22:22900976 STARFUSION other 27 20 NA [INTRACHROMOSOMAL[chr22:12.82Mb]] RBFOX2 NA IGL@ NA NA NA NA NA NA -RBFOX2--IGL@ BS_JGA9BP3A 0.476311105893857 NA NA NA no change NA NA NA 22:36027052 22:22900976 STARFUSION other 14 20 NA [INTRACHROMOSOMAL[chr22:12.82Mb]] RBFOX2 NA IGL@ NA NA NA NA NA NA -RBFOX2--IGLC2 BS_JGA9BP3A 0.476311105893857 1.77653459048933 NA NA no change no change NA NA 22:36028240 22:22900976 STARFUSION frameshift 27 17 NA [INTRACHROMOSOMAL[chr22:12.84Mb]] RBFOX2 NA IGLC2 NA NA NA NA NA NA -RBFOX2--IGLC2 BS_JGA9BP3A 0.476311105893857 1.77653459048933 NA NA no change no change NA NA 22:36027052 22:22900976 STARFUSION other 14 17 NA [INTRACHROMOSOMAL[chr22:12.84Mb]] RBFOX2 NA IGLC2 NA NA NA NA NA NA -RBFOX2--IGLC2 BS_JGA9BP3A 0.476311105893857 1.77653459048933 NA NA no change no change NA NA 22:36027052 22:22900976 ARRIBA frameshift 20 13 high [INTRACHROMOSOMAL[chr22:12.84Mb]],inversion RBFOX2 NA IGLC2 NA NA NA NA NA NA -RBFOX2--IGLC2 BS_JGA9BP3A 0.476311105893857 1.77653459048933 NA NA no change no change NA NA 22:36028240 22:22900976 ARRIBA frameshift 22 9 high [INTRACHROMOSOMAL[chr22:12.84Mb]],inversion RBFOX2 NA IGLC2 NA NA NA NA NA NA -RBFOX2--IGLC5 BS_JGA9BP3A 0.476311105893857 39.5515828643138 NA NA no change differentially expressed NA NA 22:36028240 22:22915624 ARRIBA frameshift 16 1 high [INTRACHROMOSOMAL[chr22:12.82Mb]],inversion RBFOX2 NA IGLC5 NA NA NA NA NA NA -RBM17--UPF2 BS_F0JB4EAK 1.26728643179927 0.496211208783321 NA NA no change no change NA NA 10:6101387 10:11979165 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr10:5.80Mb]],inversion RBM17 NA UPF2 NA NA NA NA NA NA -RBM20--AL355863.1(12712)/BTBD7P2(204818) BS_XZM79E42 8.4211208483466 NA NA NA differentially expressed NA NA NA 10:110644645 10:111117960 ARRIBA frameshift 3 0 medium [],deletion RBM20 NA AL355863.1 BTBD7P2 NA NA NA NA NA -RBM28--TBXAS1 BS_68KX6A42 2.22720082169236 3.11692014335209 NA NA differentially expressed differentially expressed NA NA 7:128323527 7:139793962 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr7:11.43Mb]],duplication/5'-5' RBM28 NA TBXAS1 NA NA NA NA NA NA -RBM33--AC025180.1 BS_NGSG2KB6 0.0104077498936446 NA NA NA no change NA NA NA 7:155718443 5:52932536 STARFUSION other 90 24 NA [INTERCHROMOSOMAL[chr7--chr5]] RBM33 NA AC025180.1 NA NA NA NA NA NA -RBM33--AC025180.1 BS_NGSG2KB6 0.0104077498936446 NA NA NA no change NA NA NA 7:155718443 5:52932536 ARRIBA frameshift 74 14 high [INTERCHROMOSOMAL[chr7--chr5]],translocation RBM33 NA AC025180.1 NA NA NA NA NA NA -RBM48--CAPZA2 BS_68KX6A42 0.343760995081489 2.11186926611552 NA NA no change differentially expressed NA NA 7:92537184 7:116823650 ARRIBA other 3 5 medium [INTRACHROMOSOMAL[chr7:24.27Mb]],deletion RBM48 NA CAPZA2 NA NA NA NA NA NA -RCOR1--TECPR2 BS_68KX6A42 1.13986869146302 0.222385750706667 NA NA no change no change NA NA 14:102593325 14:102434235 STARFUSION in-frame 13 6 NA [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr14:0.09Mb],LOCAL_REARRANGEMENT:+:[90180]] RCOR1 NA TECPR2 NA NA NA NA NA TCGAFusion -RCOR1--TECPR2 BS_68KX6A42 1.13986869146302 0.222385750706667 NA NA no change no change NA NA 14:102593325 14:102434235 ARRIBA in-frame 11 5 high [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr14:0.09Mb],LOCAL_REARRANGEMENT:+:[90180]],duplication RCOR1 NA TECPR2 NA NA NA NA NA TCGAFusion -RCOR1--TECPR2 BS_68KX6A42 1.13986869146302 0.222385750706667 NA NA no change no change NA NA 14:102593325 14:102431796 ARRIBA in-frame 5 6 high [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr14:0.09Mb],LOCAL_REARRANGEMENT:+:[90180]],duplication RCOR1 NA TECPR2 NA NA NA NA NA TCGAFusion -RCOR1--TECPR2 BS_68KX6A42 1.13986869146302 0.222385750706667 NA NA no change no change NA NA 14:102593323 14:102431795 ARRIBA frameshift 1 6 high [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr14:0.09Mb],LOCAL_REARRANGEMENT:+:[90180]],duplication RCOR1 NA TECPR2 NA NA NA NA NA TCGAFusion -REPS1--FABP7 BS_58YXHGAJ -0.892678900482559 0.705908174951238 NA NA no change no change NA NA 6:138982051 6:122781093 ARRIBA other 40 13 high [INTRACHROMOSOMAL[chr6:16.12Mb]],duplication/3'-3' REPS1 NA FABP7 NA NA NA NA NA NA -REV3L--FYN BS_EZ3147MX 1.42816373229834 4.25532101112455 NA NA no change differentially expressed NA NA 6:111482750 6:111780635 ARRIBA frameshift 3 0 medium [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion -REV3L--FYN BS_EZ3147MX 1.42816373229834 4.25532101112455 NA NA no change differentially expressed NA NA 6:111482750 6:111674630 ARRIBA in-frame 3 0 medium [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion -REV3L--FYN BS_H97S5SQN 1.11093654491433 3.06934040837545 NA NA no change differentially expressed NA NA 6:111482750 6:111674630 ARRIBA in-frame 1 0 low [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion -REV3L--FYN BS_KBEX4RT2 1.31539963153558 3.42299141831989 NA NA no change differentially expressed NA NA 6:111482750 6:111674630 ARRIBA in-frame 1 0 low [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion -REV3L--FYN BS_KBEX4RT2 1.31539963153558 3.42299141831989 NA NA no change differentially expressed NA NA 6:111482750 6:111661947 ARRIBA in-frame 1 0 low [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion -REV3L--FYN BS_RX1YTZ7F 0.883500472848205 2.78155591474725 NA NA no change differentially expressed NA NA 6:111482750 6:111720062 ARRIBA frameshift 1 0 low [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion -REV3L--FYN BS_RX1YTZ7F 0.883500472848205 2.78155591474725 NA NA no change differentially expressed NA NA 6:111482750 6:111674630 ARRIBA in-frame 1 0 low [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion -REV3L--FYN BS_X4DD4KSZ 0.818488625428732 1.34714954441684 NA NA no change no change NA NA 6:111482750 6:111780635 ARRIBA frameshift 1 1 medium [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion -REV3L--FYN BS_X4DD4KSZ 0.818488625428732 1.34714954441684 NA NA no change no change NA NA 6:111482750 6:111720062 ARRIBA frameshift 1 1 medium [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion -REV3L--FYN BS_Z3RCA1T9 1.60514848825742 4.51202285926897 NA NA no change differentially expressed NA NA 6:111343925 6:111720062 ARRIBA frameshift 1 0 low [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion -REV3L--FYN BS_Z3RCA1T9 1.60514848825742 4.51202285926897 NA NA no change differentially expressed NA NA 6:111482750 6:111674630 ARRIBA in-frame 1 0 low [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion -RFWD2--TNR BS_C83TK159 1.04103402084496 4.39089956108166 NA NA no change differentially expressed NA NA 1:176027572 1:175406777 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.20Mb]],deletion RFWD2 NA TNR NA TumorSuppressorGene Oncogene NA NA NA -RFX7--CYP19A1 BS_W4H1D4Y6 2.23429403786968 6.61763846866825 NA NA differentially expressed differentially expressed NA NA 15:56243125 15:51242950 STARFUSION other 12 16 NA [INTRACHROMOSOMAL[chr15:4.75Mb]] RFX7 NA CYP19A1 NA TranscriptionFactor Oncogene NA NA NA -RFX7--CYP19A1 BS_W4H1D4Y6 2.23429403786968 6.61763846866825 NA NA differentially expressed differentially expressed NA NA 15:56243125 15:51242950 ARRIBA other 11 16 high [INTRACHROMOSOMAL[chr15:4.75Mb]],deletion RFX7 NA CYP19A1 NA TranscriptionFactor Oncogene NA NA NA -RFX7--GLDN BS_W4H1D4Y6 2.23429403786968 -0.672905978917003 NA NA differentially expressed no change NA NA 15:56243125 15:51407919 ARRIBA other 14 7 high [INTRACHROMOSOMAL[chr15:4.68Mb]],deletion/5'-5' RFX7 NA GLDN NA TranscriptionFactor NA NA NA NA -RGMA--ST8SIA2 BS_68KX6A42 4.06733501187689 8.1447513455215 NA NA differentially expressed differentially expressed NA NA 15:93072916 15:92430049 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr15:0.57Mb]],inversion RGMA NA ST8SIA2 NA NA NA NA NA NA -RGS2--PTEN BS_W1385R8Y 0.32732333843925 2.7957281701359 NA NA no change differentially expressed NA NA 1:192811147 10:87894018 STARFUSION other 12 7 NA [INTERCHROMOSOMAL[chr1--chr10]] RGS2 NA PTEN NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -RGS2--PTEN BS_W1385R8Y 0.32732333843925 2.7957281701359 NA NA no change differentially expressed NA NA 1:192811147 10:87894018 ARRIBA in-frame 12 7 high [INTERCHROMOSOMAL[chr1--chr10]],translocation RGS2 NA PTEN NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -RGS2--PTEN BS_W1385R8Y 0.32732333843925 2.7957281701359 NA NA no change differentially expressed NA NA 1:192811147 10:87894025 ARRIBA frameshift 1 7 high [INTERCHROMOSOMAL[chr1--chr10]],translocation RGS2 NA PTEN NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -RGS2--PTEN BS_W1385R8Y 0.32732333843925 2.7957281701359 NA NA no change differentially expressed NA NA 1:192811147 10:87925513 ARRIBA frameshift 1 4 high [INTERCHROMOSOMAL[chr1--chr10]],translocation RGS2 NA PTEN NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -RGS9--AP003063.1 BS_6M2053M0 0.936244834693733 NA NA NA no change NA NA NA 17:65163089 11:112472264 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr17--chr11]],translocation/5'-5' RGS9 NA AP003063.1 NA NA NA NA NA NA -RHBDD1--DOCK10 BS_BMMY0H73 3.22561335592925 1.6451444813774 NA NA differentially expressed no change NA NA 2:226839627 2:224916784 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:1.79Mb]],inversion RHBDD1 NA DOCK10 NA NA NA NA NA NA -RHOJ--AC008750.1 BS_W4H1D4Y6 2.30104494945174 NA NA NA differentially expressed NA NA NA 14:63205047 19:51414320 STARFUSION other 11 4 NA [INTERCHROMOSOMAL[chr14--chr19]] RHOJ NA AC008750.1 NA NA NA NA NA NA -RHOJ--AC008750.1 BS_W4H1D4Y6 2.30104494945174 NA NA NA differentially expressed NA NA NA 14:63205047 19:51414320 ARRIBA frameshift 11 4 high [INTERCHROMOSOMAL[chr14--chr19]],translocation RHOJ NA AC008750.1 NA NA NA NA NA NA -RIMS1--AL136140.2(125965)/SUPT3H(130071) BS_58YXHGAJ -0.735017038536035 NA NA -1.08736504102587 no change NA NA no change 6:72284118 6:44679246 ARRIBA frameshift 1 3 high [],inversion RIMS1 NA AL136140.2 SUPT3H NA NA NA NA NA -RIOK3--ABAT BS_XZM79E42 0.0189911345178307 -0.406108959879449 NA NA no change no change NA NA 18:23453502 16:8740635 ARRIBA frameshift 1 1 high [INTERCHROMOSOMAL[chr18--chr16]],translocation/5'-5' RIOK3 NA ABAT NA Kinase NA NA NA NA -RIOK3--TMEM186 BS_XZM79E42 0.0189911345178307 1.21886058272115 NA NA no change no change NA NA 18:23453502 16:8781444 ARRIBA frameshift 3 1 medium [INTERCHROMOSOMAL[chr18--chr16]],translocation RIOK3 NA TMEM186 NA Kinase NA NA NA NA -RIOK3--TMEM186 BS_XZM79E42 0.0189911345178307 1.21886058272115 NA NA no change no change NA NA 18:23453502 16:8796590 ARRIBA in-frame 1 1 medium [INTERCHROMOSOMAL[chr18--chr16]],translocation RIOK3 NA TMEM186 NA Kinase NA NA NA NA -RNF115--FAM49A BS_ZQKGJD70 0.42762158641104 -0.30846343558962 NA NA no change no change NA NA 1:145746458 2:16558100 ARRIBA other 5 1 medium [INTERCHROMOSOMAL[chr1--chr2]],translocation/5'-5' RNF115 NA FAM49A NA NA Oncogene NA NA NA -RNF180--AC091976.1 BS_KBEX4RT2 1.40199478678293 NA NA NA no change NA NA NA 5:64200942 5:163180894 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr5:98.64Mb]],inversion RNF180 NA AC091976.1 NA TumorSuppressorGene NA NA NA NA -RNF216--KMT2E BS_68KX6A42 2.55724427904619 0.805427147953998 NA NA differentially expressed no change NA NA 7:5711761 7:105090009 ARRIBA frameshift 8 2 high [INTRACHROMOSOMAL[chr7:99.23Mb]],inversion RNF216 NA KMT2E NA Oncogene NA NA NA NA -RNF220--ERI3 BS_1N7MQZGR -0.208286807586714 0.153816405124893 NA NA no change no change NA NA 1:44412722 1:44319744 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.05Mb],LOCAL_INVERSION:+:-:[49934]],inversion RNF220 NA ERI3 NA Oncogene NA NA NA NA -RNF220--ERI3 BS_1N7MQZGR -0.208286807586714 0.153816405124893 NA NA no change no change NA NA 1:44412722 1:44339322 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.05Mb],LOCAL_INVERSION:+:-:[49934]],inversion RNF220 NA ERI3 NA Oncogene NA NA NA NA -RNF225--MYO18B BS_JGA9BP3A 0.354504439813741 8.38839130755515 NA NA no change differentially expressed NA NA 19:58397033 22:26013283 ARRIBA other 6 1 medium [INTERCHROMOSOMAL[chr19--chr22]],translocation RNF225 NA MYO18B NA NA TumorSuppressorGene NA NA NA -RNU1-11P--SMAP1 BS_58YXHGAJ 8.22934530870175 0.871863541495761 NA NA differentially expressed no change NA NA 6:13214216 6:70668141 ARRIBA other 6 1 medium [INTRACHROMOSOMAL[chr6:57.45Mb]],inversion/3'-3' RNU1-11P NA SMAP1 NA NA Oncogene NA NA NA -ROPN1L--AC091912.1(32556)/LINC02226(143137) BS_68KX6A42 5.96852115781715 NA NA NA differentially expressed NA NA NA 5:10448383 5:8190344 ARRIBA frameshift 4 0 medium [],duplication ROPN1L NA AC091912.1 LINC02226 NA NA NA NA NA -RP9--BBS9 BS_68KX6A42 1.32967056884713 2.34253464994076 NA NA no change differentially expressed NA NA 7:33099307 7:33367767 ARRIBA in-frame 11 7 high [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_INVERSION:-:+:[19843]],inversion RP9 NA BBS9 NA NA NA NA NA NA -RP9--BBS9 BS_68KX6A42 1.32967056884713 2.34253464994076 NA NA no change differentially expressed NA NA 7:33099307 7:33383666 ARRIBA frameshift 2 2 high [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_INVERSION:-:+:[19843]],inversion RP9 NA BBS9 NA NA NA NA NA NA -RP9--BBS9 BS_68KX6A42 1.32967056884713 2.34253464994076 NA NA no change differentially expressed NA NA 7:33100531 7:33367767 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_INVERSION:-:+:[19843]],inversion RP9 NA BBS9 NA NA NA NA NA NA -RP9--BBS9 BS_68KX6A42 1.32967056884713 2.34253464994076 NA NA no change differentially expressed NA NA 7:33109221 7:33367767 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_INVERSION:-:+:[19843]],inversion RP9 NA BBS9 NA NA NA NA NA NA -RP9--ELK1P1(62785)/AC073325.1(5722) BS_68KX6A42 1.32967056884713 2.12524260008112 NA NA no change differentially expressed NA NA 7:33099307 7:45454990 ARRIBA frameshift 6 0 high [],duplication RP9 NA ELK1P1 AC073325.1 NA NA NA NA NA -RPL12P40(337268)/AC100781.1(644765)--VWA2 BS_HWGWYCY7 NA 2.57514426899051 NA NA NA differentially expressed NA NA 18:38010444 10:114277914 ARRIBA other 4 0 medium [],translocation RPL12P40 AC100781.1 VWA2 NA NA NA NA NA NA -RPL23AP60(7972)--ITPR2 BS_EZ3147MX -0.813450411779785 3.51752859998957 NA NA no change differentially expressed NA NA 10:133786671 12:26340328 ARRIBA other 4 0 medium [],translocation RPL23AP60 NA ITPR2 NA NA NA NA NA NA -RPL3--RPL3P13 BS_FCDAH728 1.96448605738602 -0.269654029477757 NA NA no change no change NA NA 22:39313210 4:84544436 STARFUSION other 42 0 NA [INTERCHROMOSOMAL[chr22--chr4]] RPL3 NA RPL3P13 NA NA NA NA NA NA -RPL3--RPL3P13 BS_FCDAH728 1.96448605738602 -0.269654029477757 NA NA no change no change NA NA 22:39313202 4:84544428 STARFUSION other 17 0 NA [INTERCHROMOSOMAL[chr22--chr4]] RPL3 NA RPL3P13 NA NA NA NA NA NA -RPP40--FUT9 BS_58YXHGAJ 1.51865536716587 0.513472383385429 NA NA no change no change NA NA 6:4999809 6:96203015 ARRIBA frameshift 10 7 high [INTRACHROMOSOMAL[chr6:91.01Mb]],duplication/5'-5' RPP40 NA FUT9 NA NA NA NA NA NA -RPS6KA2--C6orf118 BS_6M2053M0 -0.489355638245346 1.41733821166399 NA NA no change no change NA NA 6:166626921 6:165302296 STARFUSION frameshift 3 1 NA [INTRACHROMOSOMAL[chr6:1.10Mb]] RPS6KA2 NA C6orf118 NA TumorSuppressorGene, Kinase NA NA NA NA -RPS6KA2--C6orf118 BS_6M2053M0 -0.489355638245346 1.41733821166399 NA NA no change no change NA NA 6:166626921 6:165302296 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr6:1.10Mb]],deletion RPS6KA2 NA C6orf118 NA TumorSuppressorGene, Kinase NA NA NA NA -RPS6KA2--LINC00207 BS_JGA9BP3A -3.5308484463149 5.95772472124759 NA NA differentially expressed differentially expressed NA NA 6:166858200 22:44571376 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr6--chr22]],translocation RPS6KA2 NA LINC00207 NA TumorSuppressorGene, Kinase NA NA NA NA -RPS6KA2--SNORD65(141443)/AL365503.1(104423) BS_58YXHGAJ -0.851061010375074 NA NA NA no change NA NA NA 6:166538668 6:67351923 ARRIBA frameshift 31 10 high [],inversion RPS6KA2 NA SNORD65 AL365503.1 TumorSuppressorGene, Kinase NA NA NA NA -RPS8--RPS8P6 BS_JQVAWTTM 1.68461360117422 -0.377943070969894 NA NA no change no change NA NA 1:44778055 3:308938 STARFUSION other 17 0 NA [INTERCHROMOSOMAL[chr1--chr3]] RPS8 NA RPS8P6 NA NA NA NA NA NA -RRN3P2--ANK2 BS_1N7MQZGR -0.502531413931434 1.43773187613103 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_21ET39G7 -0.314815147863089 0.861812769653678 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_4PWDGEB0 -1.72119715626458 0.673494156313071 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_5VPM0F36 0.370939145323731 -0.138372741818146 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_68KX6A42 -0.502531413931434 0.402834130070513 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_6M2053M0 0.351951138051122 0.0383185714900435 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_7WM3MNZ0 -0.600153253762871 -0.605640624530479 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_8ZY4GST0 0.216184082645836 0.393810842738193 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_EZ3147MX 0.519375882989024 -0.286955977995412 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_FCDAH728 1.24243640712457 -0.234939596768779 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_G3NN392N 0.915191739992994 -1.95715779994612 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_JB43XBCQ -0.00796612304277741 -0.51671406852721 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_KBEX4RT2 0.714060558941129 0.00331941500380556 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NB9XXBW6 -0.0715746569591287 0.428134515100548 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NEVYM2FP 0.196368256330414 0.536251625381146 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_NGSG2KB6 -0.575500988964733 -0.19527029259906 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_R9B92M75 -0.0502479381703337 0.266344951253776 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_S6Q7NKA3 -1.43014625244211 -3.06704464579165 NA NA no change differentially expressed NA NA 16:29082041 4:113174416 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_W7MFJZ5A -0.882968151505165 0.451596294987602 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_XGDPK33A -0.158154821777783 0.393559487860661 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_YDEVMD24 -0.292017611557012 0.146669560154366 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_Z3RCA1T9 -0.269362116897465 -0.485962261504492 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RRN3P2--ANK2 BS_ZD5HN296 -0.909803661718546 0.924151931709359 NA NA no change no change NA NA 16:29082041 4:113174416 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA -RSBN1L--KDELR2 BS_68KX6A42 2.01436962872652 4.71734986037972 NA NA differentially expressed differentially expressed NA NA 7:77750064 7:6474284 ARRIBA frameshift 13 3 high [INTRACHROMOSOMAL[chr7:71.21Mb]],inversion RSBN1L NA KDELR2 NA NA NA NA NA NA -RSBN1L--KDELR2 BS_68KX6A42 2.01436962872652 4.71734986037972 NA NA differentially expressed differentially expressed NA NA 7:77750064 7:6469754 ARRIBA in-frame 1 2 medium [INTRACHROMOSOMAL[chr7:71.21Mb]],inversion RSBN1L NA KDELR2 NA NA NA NA NA NA -RSBN1L--KDELR2 BS_68KX6A42 2.01436962872652 4.71734986037972 NA NA differentially expressed differentially expressed NA NA 7:77736526 7:6474284 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:71.21Mb]],inversion RSBN1L NA KDELR2 NA NA NA NA NA NA -RSRP1--RPTOR BS_GWSJ4Z9H -1.83375520383131 1.8996257092087 NA NA no change no change NA NA 1:25338069 17:80880415 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr1--chr17]],translocation RSRP1 NA RPTOR NA Oncogene NA NA NA NA -RSRP1--RPTOR BS_GWSJ4Z9H -1.83375520383131 1.8996257092087 NA NA no change no change NA NA 1:25267740 17:80880415 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr1--chr17]],translocation RSRP1 NA RPTOR NA Oncogene NA NA NA NA -RTFDC1--MFSD14B BS_S6Q7NKA3 -0.0776299285342888 NA NA NA no change NA NA NA 20:56484189 9:94451456 STARFUSION in-frame 5 3 NA [INTERCHROMOSOMAL[chr20--chr9]] RTFDC1 NA MFSD14B NA NA NA NA NA NA -RTFDC1--MFSD14B BS_S6Q7NKA3 -0.0776299285342888 NA NA NA no change NA NA NA 20:56484189 9:94451456 ARRIBA in-frame 5 3 high [INTERCHROMOSOMAL[chr20--chr9]],translocation RTFDC1 NA MFSD14B NA NA NA NA NA NA -SARAF--TUSC3 BS_6M2053M0 0.285920302772658 0.306615340288004 NA NA no change no change NA NA 8:30073877 8:15623080 STARFUSION in-frame 10 1 NA [INTRACHROMOSOMAL[chr8:14.30Mb]] SARAF NA TUSC3 NA NA NA NA NA NA -SARAF--TUSC3 BS_6M2053M0 0.285920302772658 0.306615340288004 NA NA no change no change NA NA 8:30073877 8:15623080 ARRIBA in-frame 8 1 high [INTRACHROMOSOMAL[chr8:14.30Mb]],inversion SARAF NA TUSC3 NA NA NA NA NA NA -SCFD1--SCFD1 BS_6M2053M0 -0.402332738144874 -0.402332738144874 NA NA no change no change NA NA 14:30634037 14:30672011 ARRIBA frameshift 5 2 medium [SELFIE,INTRACHROMOSOMAL[chr14:0.11Mb]],inversion/3'-3' SCFD1 NA SCFD1 NA NA NA NA NA NA -SCFD2--AC104066.2 BS_NGSG2KB6 4.76792610483625 NA NA NA differentially expressed NA NA NA 4:53145333 4:52685473 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr4:0.18Mb]],inversion SCFD2 NA AC104066.2 NA NA NA NA NA NA -SCFD2--AC119751.1 BS_NGSG2KB6 4.76792610483625 NA NA NA differentially expressed NA NA NA 4:53145333 4:49557356 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr4:3.32Mb]],inversion SCFD2 NA AC119751.1 NA NA NA NA NA NA -SCFD2--DANCR BS_NGSG2KB6 4.76792610483625 3.14756495084733 NA NA differentially expressed differentially expressed NA NA 4:53145333 4:52712824 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.15Mb]],inversion SCFD2 NA DANCR NA NA NA NA NA NA -SCFD2--FIP1L1 BS_NGSG2KB6 4.76792610483625 1.717416206506 NA NA differentially expressed no change NA NA 4:53352598 4:53458653 ARRIBA in-frame 1 0 low [CCLE,ChimerSeq,GTEx,INTRACHROMOSOMAL[chr4:0.01Mb],LOCAL_INVERSION:-:+:[11568]],inversion SCFD2 NA FIP1L1 NA NA CosmicCensus, Oncogene NA NA TCGAFusion -SCFD2--IGFBP7 BS_68KX6A42 3.4135494757454 3.38517215778193 NA NA differentially expressed differentially expressed NA NA 4:53273826 4:57033311 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr4:3.66Mb]],duplication SCFD2 NA IGFBP7 NA NA TumorSuppressorGene, Oncogene NA NA NA -SCFD2--IGFBP7 BS_68KX6A42 3.4135494757454 3.38517215778193 NA NA differentially expressed differentially expressed NA NA 4:53273826 4:57040933 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr4:3.66Mb]],duplication SCFD2 NA IGFBP7 NA NA TumorSuppressorGene, Oncogene NA NA NA -SCFD2--IGFBP7 BS_68KX6A42 3.4135494757454 3.38517215778193 NA NA differentially expressed differentially expressed NA NA 4:53313636 4:57040933 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr4:3.66Mb]],duplication SCFD2 NA IGFBP7 NA NA TumorSuppressorGene, Oncogene NA NA NA -SCFD2--NMU BS_GWSJ4Z9H 3.55476398974458 5.95836571269081 NA NA differentially expressed differentially expressed NA NA 4:53352598 4:55630460 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr4:2.23Mb]],duplication SCFD2 NA NMU NA NA NA NA NA NA -SCML1--AC006210.2(70195)/DCAF8L2(428) BS_KBEX4RT2 2.3143921450395 NA NA 9.07464210929169 differentially expressed NA NA differentially expressed X:17737680 X:27589954 ARRIBA other 1 1 high [],deletion SCML1 NA AC006210.2 DCAF8L2 NA NA NA NA NA -SCML1--DCAF8L2 BS_KBEX4RT2 2.3143921450395 9.07464210929169 NA NA differentially expressed differentially expressed NA NA X:17737680 X:27631879 STARFUSION other 12 2 NA [INTRACHROMOSOMAL[chrX:9.84Mb]] SCML1 NA DCAF8L2 NA NA NA NA NA NA -SCML1--DCAF8L2 BS_KBEX4RT2 2.3143921450395 9.07464210929169 NA NA differentially expressed differentially expressed NA NA X:17737680 X:27631879 ARRIBA other 12 2 high [INTRACHROMOSOMAL[chrX:9.84Mb]],deletion SCML1 NA DCAF8L2 NA NA NA NA NA NA -SCML1--PRDX4 BS_KBEX4RT2 2.3143921450395 4.17842544611019 NA NA differentially expressed differentially expressed NA NA X:17737680 X:23671529 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chrX:5.91Mb]],deletion SCML1 NA PRDX4 NA NA NA NA NA NA -SCRG1--SCOC-AS1 BS_W1385R8Y 0.707481449275836 -1.67688993717361 NA NA no change no change NA NA 4:173403950 4:140360974 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr4:33.01Mb]],inversion/3'-3' SCRG1 NA SCOC-AS1 NA NA NA NA NA NA -SCRN1--AVL9 BS_68KX6A42 -0.37202190674192 0.843812852394597 NA NA no change no change NA NA 7:29937644 7:32517225 ARRIBA other 16 8 medium [INTRACHROMOSOMAL[chr7:2.51Mb]],duplication/5'-5' SCRN1 NA AVL9 NA NA NA NA NA NA -SCRN1--LSM5 BS_68KX6A42 -0.37202190674192 3.16650229082635 NA NA no change differentially expressed NA NA 7:29940682 7:32489344 STARFUSION in-frame 23 10 NA [INTRACHROMOSOMAL[chr7:2.50Mb]] SCRN1 NA LSM5 NA NA NA NA NA NA -SCRN1--LSM5 BS_68KX6A42 -0.37202190674192 3.16650229082635 NA NA no change differentially expressed NA NA 7:29940682 7:32489344 ARRIBA in-frame 23 10 high [INTRACHROMOSOMAL[chr7:2.50Mb]],duplication SCRN1 NA LSM5 NA NA NA NA NA NA -SDCBP--MKL1 BS_FCDAH728 1.06906630342657 -0.0930189677486063 NA NA no change no change NA NA 8:58565066 22:40463286 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr8--chr22]],translocation SDCBP NA MKL1 NA NA Oncogene NA NA NA -SDK1--AC007128.1(83186)/NXPH1(6253) BS_JB43XBCQ 0.419289845627699 9.53210039446927 NA 1.02657556617306 no change differentially expressed NA no change 7:4221364 7:8427702 ARRIBA frameshift 2 0 high [],deletion SDK1 NA AC007128.1 NXPH1 NA NA NA NA NA -SDK1--MAGI2 BS_H97S5SQN 1.53422171678988 1.83442781805369 NA NA no change no change NA NA 7:3301884 7:78256581 ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr7:73.75Mb]],inversion SDK1 NA MAGI2 NA NA NA NA NA NA -SDK1--SEMA3E BS_68KX6A42 1.6870785317397 5.35280894577697 NA NA no change differentially expressed NA NA 7:3642105 7:83469302 ARRIBA frameshift 2 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr7:79.09Mb]],inversion SDK1 NA SEMA3E NA NA NA NA NA NA -SELENOI--MAP4K4 BS_3AC3SRWH NA 1.90209067706911 NA NA NA no change NA NA 2:26346289 2:101823928 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr2:75.30Mb]],deletion SELENOI NA MAP4K4 NA NA Kinase NA NA NA -SELENOS--ACSBG1 BS_68KX6A42 NA -1.0639682884494 NA NA NA no change NA NA 15:101274420 15:78182785 STARFUSION frameshift 22 5 NA [INTRACHROMOSOMAL[chr15:23.03Mb]] SELENOS NA ACSBG1 NA NA NA NA NA NA -SELENOS--ACSBG1 BS_68KX6A42 NA -1.0639682884494 NA NA NA no change NA NA 15:101274420 15:78182785 ARRIBA frameshift 22 5 high [INTRACHROMOSOMAL[chr15:23.03Mb]],deletion SELENOS NA ACSBG1 NA NA NA NA NA NA -SEMA3C--SHH BS_68KX6A42 2.31305404178331 2.54423901428369 NA NA differentially expressed differentially expressed NA NA 7:80789306 7:155806557 ARRIBA frameshift 3 3 high [INTRACHROMOSOMAL[chr7:74.88Mb]],duplication SEMA3C NA SHH NA NA Oncogene NA NA NA -SEMA3C--YWHAG BS_68KX6A42 2.31305404178331 -0.151746799376772 NA NA differentially expressed no change NA NA 7:80916679 7:76330233 STARFUSION frameshift 23 2 NA [INTRACHROMOSOMAL[chr7:4.38Mb]] SEMA3C NA YWHAG NA NA NA NA NA NA -SEMA3C--YWHAG BS_68KX6A42 2.31305404178331 -0.151746799376772 NA NA differentially expressed no change NA NA 7:80916679 7:76330233 ARRIBA frameshift 22 2 high [INTRACHROMOSOMAL[chr7:4.38Mb]],deletion SEMA3C NA YWHAG NA NA NA NA NA NA -SEMA3E--AC073136.1(1998)/AC073136.2(11255) BS_68KX6A42 5.35280894577697 NA NA NA differentially expressed NA NA NA 7:83490114 7:56293423 ARRIBA frameshift 4 2 high [],deletion SEMA3E NA AC073136.1 AC073136.2 NA NA NA NA NA -SEMA5A--AC091941.1(2678)/AC091912.2(60179) BS_4PPHAQXF 5.41908055221033 NA NA NA differentially expressed NA NA NA 5:9108140 5:8083439 ARRIBA frameshift 20 3 high [],deletion SEMA5A NA AC091941.1 AC091912.2 NA NA NA NA NA -SEMA5A--EDIL3 BS_ZF6BSFNF 4.12514423347822 1.09231703551467 NA NA differentially expressed no change NA NA 5:9379823 5:84106830 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr5:74.39Mb]],duplication SEMA5A NA EDIL3 NA NA NA NA NA NA -SEMA5A--MARCH6 BS_4PPHAQXF 5.41908055221033 0.570738448498618 NA NA differentially expressed no change NA NA 5:9108140 5:10423735 STARFUSION in-frame 9 1 NA [INTRACHROMOSOMAL[chr5:0.81Mb]] SEMA5A NA MARCH6 NA NA NA NA NA NA -SEMA5A--MARCH6 BS_4PPHAQXF 5.41908055221033 0.570738448498618 NA NA differentially expressed no change NA NA 5:9108140 5:10423735 ARRIBA in-frame 9 1 high [INTRACHROMOSOMAL[chr5:0.81Mb]],inversion SEMA5A NA MARCH6 NA NA NA NA NA NA -SEMA5A--RNU1-76P(92018)/AC091941.1(7864) BS_4PPHAQXF 5.41908055221033 NA NA NA differentially expressed NA NA NA 5:9108140 5:8072322 ARRIBA frameshift 51 13 high [],deletion SEMA5A NA RNU1-76P AC091941.1 NA NA NA NA NA -SENP6--COX11P1(1499)/Z98745.1(6342) BS_58YXHGAJ -0.390626400844032 28.3070264492413 NA NA no change differentially expressed NA NA 6:75602576 6:28449306 ARRIBA frameshift 10 3 high [],inversion SENP6 NA COX11P1 Z98745.1 NA NA NA NA NA -SENP6--RNU2-45P(15949)/ZSCAN23(5525) BS_58YXHGAJ -0.390626400844032 -0.0917092771760362 NA 2.5646892152652 no change no change NA differentially expressed 6:75602576 6:28426405 ARRIBA frameshift 3 0 medium [],inversion SENP6 NA RNU2-45P ZSCAN23 NA NA NA TranscriptionFactor NA -SENP6--Z98745.1(21749)/GPX6(25406) BS_58YXHGAJ -0.390626400844032 NA NA 3.10590902156706 no change NA NA differentially expressed 6:75602576 6:28477890 ARRIBA frameshift 4 1 high [],inversion SENP6 NA Z98745.1 GPX6 NA NA NA NA NA -SENP6--ZSCAN23 BS_58YXHGAJ -0.390626400844032 2.5646892152652 NA NA no change differentially expressed NA NA 6:75602576 6:28435607 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr6:47.16Mb]],inversion SENP6 NA ZSCAN23 NA NA TranscriptionFactor NA NA NA -SENP7--AC046144.1 BS_S6Q7NKA3 2.53366468065859 NA NA NA differentially expressed NA NA NA 3:101513091 3:103540590 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr3:2.03Mb]],duplication SENP7 NA AC046144.1 NA NA NA NA NA NA -SENP7--AC046144.1(11068)/TUBBP11(79106) BS_S6Q7NKA3 2.53366468065859 NA NA NA differentially expressed NA NA NA 3:101501070 3:103551555 ARRIBA frameshift 1 3 high [],duplication SENP7 NA AC046144.1 TUBBP11 NA NA NA NA NA -SENP7--PCNP BS_BMMY0H73 1.07171557743734 0.839163736001425 NA NA no change no change NA NA 3:101513091 3:101590215 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:0.06Mb],LOCAL_INVERSION:-:+:[60854]],inversion SENP7 NA PCNP NA NA NA NA NA NA -SENP7--SENP7 BS_XGDPK33A 1.95840722038347 1.95840722038347 NA NA no change no change NA NA 3:101330410 3:101331985 ARRIBA other 2 1 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr3:0.19Mb]],duplication SENP7 NA SENP7 NA NA NA NA NA NA -SENP8--FBXL22(5790)/HERC1(400) BS_68KX6A42 7.19458282259413 -1.35856255514026 NA -0.308835249303566 differentially expressed no change NA no change 15:72146446 15:63608218 ARRIBA other 8 6 medium [],duplication SENP8 NA FBXL22 HERC1 NA NA NA NA NA -SERAC1--AFG1L(15300)/AL391646.1(8922) BS_58YXHGAJ 0.0587175218031797 NA NA NA no change NA NA NA 6:158143056 6:108542096 ARRIBA frameshift 2 0 medium [],inversion SERAC1 NA AFG1L AL391646.1 NA NA NA NA NA -SERINC1--AL035446.1 BS_58YXHGAJ -0.292445175735416 NA NA NA no change NA NA NA 6:122471699 6:140904857 STARFUSION other 16 4 NA [INTRACHROMOSOMAL[chr6:18.37Mb]] SERINC1 NA AL035446.1 NA NA NA NA NA NA -SERINC1--AL035446.1 BS_58YXHGAJ -0.292445175735416 NA NA NA no change NA NA NA 6:122471699 6:140846304 STARFUSION other 4 4 NA [INTRACHROMOSOMAL[chr6:18.37Mb]] SERINC1 NA AL035446.1 NA NA NA NA NA NA -SERINC1--AL035446.1 BS_58YXHGAJ -0.292445175735416 NA NA NA no change NA NA NA 6:122471699 6:140846304 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:18.37Mb]],duplication SERINC1 NA AL035446.1 NA NA NA NA NA NA -SERINC1--AL035446.1 BS_58YXHGAJ -0.292445175735416 NA NA NA no change NA NA NA 6:122471699 6:140852924 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:18.37Mb]],duplication SERINC1 NA AL035446.1 NA NA NA NA NA NA -SERINC1--AL035446.1(51933)/AL357084.1(17600) BS_58YXHGAJ -0.292445175735416 NA NA NA no change NA NA NA 6:122471699 6:140904857 ARRIBA frameshift 8 2 high [],duplication SERINC1 NA AL035446.1 AL357084.1 NA NA NA NA NA -SFI1--AC021193.1(8339)/NDUFB5P1(707544) BS_49CJNZ06 -1.08092326629438 NA NA NA no change NA NA NA 22:31508376 4:179865920 ARRIBA frameshift 3 1 high [],translocation SFI1 NA AC021193.1 NDUFB5P1 NA NA NA NA NA -SFI1--TAB1 BS_ZD5HN296 -1.6335223023731 0.702244468018334 NA NA no change no change NA NA 22:31496637 22:39415006 ARRIBA other 3 2 high [INTRACHROMOSOMAL[chr22:7.78Mb]],deletion SFI1 NA TAB1 NA NA NA NA NA NA -SFI1--TAB1 BS_ZD5HN296 -1.6335223023731 0.702244468018334 NA NA no change no change NA NA 22:31496637 22:39414880 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr22:7.78Mb]],deletion SFI1 NA TAB1 NA NA NA NA NA NA -SGPL1--URGCP BS_W4H1D4Y6 3.56144898550082 -0.661316405252497 NA NA differentially expressed no change NA NA 10:70877379 7:43881957 STARFUSION other 11 5 NA [INTERCHROMOSOMAL[chr10--chr7]] SGPL1 NA URGCP NA NA NA NA NA NA -SGPL1--URGCP BS_W4H1D4Y6 3.56144898550082 -0.661316405252497 NA NA differentially expressed no change NA NA 10:70877379 7:43881957 ARRIBA frameshift 10 5 high [INTERCHROMOSOMAL[chr10--chr7]],translocation SGPL1 NA URGCP NA NA NA NA NA NA -SGPL1--URGCP-MRPS24 BS_W4H1D4Y6 3.56144898550082 -1.39255016603236 NA NA differentially expressed no change NA NA 10:70877379 7:43881957 STARFUSION other 11 3 NA [INTERCHROMOSOMAL[chr10--chr7]] SGPL1 NA URGCP-MRPS24 NA NA NA NA NA NA -SGPL1--URGCP-MRPS24 BS_W4H1D4Y6 3.56144898550082 -1.39255016603236 NA NA differentially expressed no change NA NA 10:70877379 7:43881957 ARRIBA frameshift 9 3 high [INTERCHROMOSOMAL[chr10--chr7]],translocation SGPL1 NA URGCP-MRPS24 NA NA NA NA NA NA -SH3GL1--AP001001.2(102844)/AP002001.1(15059) BS_8ZY4GST0 1.24847192030262 NA NA NA no change NA NA NA 19:4400324 11:106234960 ARRIBA frameshift 3 0 high [],translocation SH3GL1 NA AP001001.2 AP002001.1 CosmicCensus, Oncogene NA NA NA NA -SH3RF1--NEK1 BS_PXCPK5XS 2.49326085213374 1.87095319180959 NA NA differentially expressed no change NA NA 4:169106847 4:169406747 STARFUSION frameshift 11 1 NA [INTRACHROMOSOMAL[chr4:0.12Mb]] SH3RF1 NA NEK1 NA NA Kinase, Kinase NA NA TCGAFusion -SH3RF1--NEK1 BS_PXCPK5XS 2.49326085213374 1.87095319180959 NA NA differentially expressed no change NA NA 4:169106847 4:169406747 ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr4:0.12Mb]],duplication SH3RF1 NA NEK1 NA NA Kinase, Kinase NA NA TCGAFusion -SH3YL1--AC009975.1 BS_X0XXN9BK -1.50889935567 NA NA NA no change NA NA NA 2:233486 2:49407798 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr2:48.54Mb]],duplication/5'-5' SH3YL1 NA AC009975.1 NA NA NA NA NA NA -SH3YL1--AC009975.2 BS_X0XXN9BK -1.50889935567 NA NA NA no change NA NA NA 2:234160 2:49331980 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr2:48.94Mb]],duplication SH3YL1 NA AC009975.2 NA NA NA NA NA NA -SHMT2--TUBA1C BS_5VPM0F36 1.97206052662892 1.16605269179834 NA NA no change no change NA NA 12:57230892 12:49202118 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr12:7.95Mb]],inversion/3'-3' SHMT2 NA TUBA1C NA NA NA NA NA NA -SLC12A7--5_8S_rRNA(850175)/AC116618.1(502332) BS_4PPHAQXF 1.54545889491905 -0.0294627825494395 NA NA no change no change NA NA 5:1085232 22:12100134 ARRIBA frameshift 2 2 high [],translocation SLC12A7 NA 5_8S_rRNA AC116618.1 NA NA NA NA NA -SLC12A7--AHRR BS_W4H1D4Y6 2.85137239279467 1.87462107768275 NA NA differentially expressed no change NA NA 5:1063844 5:343893 STARFUSION frameshift 4 5 NA [INTRACHROMOSOMAL[chr5:0.61Mb]] SLC12A7 NA AHRR NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -SLC12A7--AHRR BS_W4H1D4Y6 2.85137239279467 1.87462107768275 NA NA differentially expressed no change NA NA 5:1063844 5:343893 ARRIBA frameshift 4 5 high [INTRACHROMOSOMAL[chr5:0.61Mb]],inversion SLC12A7 NA AHRR NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -SLC12A7--PDCD6 BS_W4H1D4Y6 2.85137239279467 0.558667813889311 NA NA differentially expressed no change NA NA 5:1063844 5:343893 ARRIBA frameshift 4 4 high [INTRACHROMOSOMAL[chr5:0.70Mb]],inversion SLC12A7 NA PDCD6 NA NA Oncogene NA NA NA -SLC12A7--TERT BS_4PPHAQXF 1.54545889491905 1.80195245324164 NA NA no change no change NA NA 5:1073633 5:1282624 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr5:0.14Mb]],duplication SLC12A7 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA TCGAFusion -SLC16A7--KNTC1 BS_QKT3TJVK 5.05618421686932 7.89304541147446 NA NA differentially expressed differentially expressed NA NA 12:59705018 12:122538339 STARFUSION in-frame 65 13 NA [INTRACHROMOSOMAL[chr12:62.74Mb]] SLC16A7 NA KNTC1 NA NA NA NA NA NA -SLC16A7--KNTC1 BS_QKT3TJVK 5.05618421686932 7.89304541147446 NA NA differentially expressed differentially expressed NA NA 12:59705018 12:122538339 ARRIBA in-frame 63 13 high [INTRACHROMOSOMAL[chr12:62.74Mb]],deletion SLC16A7 NA KNTC1 NA NA NA NA NA NA -SLC16A7--KNTC1 BS_QKT3TJVK 5.05618421686932 7.89304541147446 NA NA differentially expressed differentially expressed NA NA 12:59705018 12:122539676 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr12:62.74Mb]],deletion SLC16A7 NA KNTC1 NA NA NA NA NA NA -SLC16A7--KNTC1 BS_QKT3TJVK 5.05618421686932 7.89304541147446 NA NA differentially expressed differentially expressed NA NA 12:59655250 12:122538339 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr12:62.74Mb]],deletion SLC16A7 NA KNTC1 NA NA NA NA NA NA -SLC1A2--AC090092.1(110089)/AC100767.2(56866) BS_ZD5HN296 -0.342344951889885 NA NA NA no change NA NA NA 11:35280867 11:23313250 ARRIBA frameshift 132 72 high [],deletion SLC1A2 NA AC090092.1 AC100767.2 NA NA NA NA NA -SLC1A2--AC090092.1(138270)/AC100767.2(28685) BS_ZD5HN296 -0.342344951889885 NA NA NA no change NA NA NA 11:35280867 11:23341431 ARRIBA frameshift 3 0 medium [],deletion SLC1A2 NA AC090092.1 AC100767.2 NA NA NA NA NA -SLC1A2--CCKBR(23187)/AC068733.2(1875) BS_ZD5HN296 -0.342344951889885 -1.26339732416035 NA NA no change no change NA NA 11:35280867 11:6295314 ARRIBA frameshift 2 1 medium [],deletion SLC1A2 NA CCKBR AC068733.2 NA NA NA NA NA -SLC24A2(44335)/AL158077.1(64537)--LARP1 BS_W4H1D4Y6 -2.54748681655893 0.792464679675862 NA NA differentially expressed no change NA NA 9:19831263 5:154799591 ARRIBA other 5 1 high [],translocation SLC24A2 AL158077.1 LARP1 NA NA NA NA NA NA -SLC24A2(62721)/AL158077.1(46151)--LARP1 BS_W4H1D4Y6 -2.54748681655893 0.792464679675862 NA NA differentially expressed no change NA NA 9:19849649 5:154799591 ARRIBA other 17 6 high [],translocation SLC24A2 AL158077.1 LARP1 NA NA NA NA NA NA -SLC25A42--C1orf43 BS_FCDAH728 -1.35729189264671 1.95972364394769 NA NA no change no change NA NA 19:19096203 1:154207650 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr19--chr1]],translocation SLC25A42 NA C1orf43 NA NA NA NA NA NA -SLC26A4--AGK BS_68KX6A42 3.49514897344647 0.909416343914078 NA NA differentially expressed no change NA NA 7:107675109 7:141593146 STARFUSION frameshift 81 24 NA [INTRACHROMOSOMAL[chr7:33.83Mb]] SLC26A4 NA AGK NA NA NA NA NA NA -SLC26A4--AGK BS_68KX6A42 3.49514897344647 0.909416343914078 NA NA differentially expressed no change NA NA 7:107675109 7:141593146 ARRIBA frameshift 73 21 high [INTRACHROMOSOMAL[chr7:33.83Mb]],deletion SLC26A4 NA AGK NA NA NA NA NA NA -SLC26A4--CAPZA2 BS_68KX6A42 3.49514897344647 2.11186926611552 NA NA differentially expressed differentially expressed NA NA 7:107690237 7:116819584 ARRIBA frameshift 78 39 high [INTRACHROMOSOMAL[chr7:9.09Mb]],inversion/3'-3' SLC26A4 NA CAPZA2 NA NA NA NA NA NA -SLC26A4--MET BS_68KX6A42 3.49514897344647 11.1775292156991 NA NA differentially expressed differentially expressed NA NA 7:107690237 7:116784891 ARRIBA frameshift 5 8 high [INTRACHROMOSOMAL[chr7:8.95Mb]],inversion/3'-3' SLC26A4 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -SLC29A4--ZNF735 BS_68KX6A42 -0.410470821937626 120.350411246089 NA NA no change differentially expressed NA NA 7:5291821 7:64213092 ARRIBA in-frame 6 4 high [INTRACHROMOSOMAL[chr7:58.90Mb]],deletion SLC29A4 NA ZNF735 NA NA TranscriptionFactor NA NA NA -SLC35F1--AL590426.2(297354)/AL365222.1(270343) BS_58YXHGAJ 1.03510680557901 NA NA NA no change NA NA NA 6:117907899 6:77073214 ARRIBA frameshift 3 0 high [],duplication SLC35F1 NA AL590426.2 AL365222.1 NA NA NA NA NA -SLC37A3--TCF25 BS_HWGWYCY7 -0.468168418112295 -0.488385001375326 NA NA no change no change NA NA 7:140355668 16:89895038 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr7--chr16]],translocation SLC37A3 NA TCF25 NA NA NA NA NA NA -SLC44A5--AC068413.1(216058)/RPL35AP19(44325) BS_R7NTZR4C 4.95041799740357 NA NA -0.041549191779317 differentially expressed NA NA no change 1:75300612 8:121335812 ARRIBA frameshift 3 1 high [],translocation SLC44A5 NA AC068413.1 RPL35AP19 NA NA NA NA NA -SLC6A3--AP000282.1 BS_W4H1D4Y6 -0.258038939045862 NA NA NA no change NA NA NA 5:1409721 21:33030685 ARRIBA frameshift 16 2 high [INTERCHROMOSOMAL[chr5--chr21]],translocation SLC6A3 NA AP000282.1 NA Oncogene NA NA NA NA -SLIT1--PLEKHS1(15754)/SNORA17(21276) BS_EZ3147MX 1.13310235615072 -0.279720866148544 NA -0.361349273027193 no change no change NA no change 10:97069171 10:113799183 ARRIBA other 22 18 medium [],inversion SLIT1 NA PLEKHS1 SNORA17 NA NA NA NA NA -SMAP1--AL008729.1 BS_58YXHGAJ 0.871863541495761 NA NA NA no change NA NA NA 6:70668141 6:13281553 STARFUSION other 13 5 NA [INTRACHROMOSOMAL[chr6:57.37Mb]] SMAP1 NA AL008729.1 NA Oncogene NA NA NA NA -SMAP1--AL008729.1 BS_58YXHGAJ 0.871863541495761 NA NA NA no change NA NA NA 6:70668141 6:13281553 ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr6:57.37Mb]],inversion SMAP1 NA AL008729.1 NA Oncogene NA NA NA NA -SMAP1--AL008729.1 BS_58YXHGAJ 0.871863541495761 NA NA NA no change NA NA NA 6:70668141 6:13267835 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr6:57.37Mb]],inversion SMAP1 NA AL008729.1 NA Oncogene NA NA NA NA -SMAP1--AL008729.1 BS_58YXHGAJ 0.871863541495761 NA NA NA no change NA NA NA 6:70668716 6:13267835 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr6:57.37Mb]],inversion SMAP1 NA AL008729.1 NA Oncogene NA NA NA NA -SMAP1--TBC1D7 BS_58YXHGAJ 0.871863541495761 0.669652551215988 NA NA no change no change NA NA 6:70668141 6:13281553 STARFUSION other 13 5 NA [INTRACHROMOSOMAL[chr6:57.34Mb]] SMAP1 NA TBC1D7 NA Oncogene NA NA NA NA -SMAP1--TBC1D7 BS_58YXHGAJ 0.871863541495761 0.669652551215988 NA NA no change no change NA NA 6:70668141 6:13281553 ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr6:57.34Mb]],inversion SMAP1 NA TBC1D7 NA Oncogene NA NA NA NA -SMAP1--TBC1D7 BS_58YXHGAJ 0.871863541495761 0.669652551215988 NA NA no change no change NA NA 6:70668141 6:13267835 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr6:57.34Mb]],inversion SMAP1 NA TBC1D7 NA Oncogene NA NA NA NA -SMAP1--TBC1D7 BS_58YXHGAJ 0.871863541495761 0.669652551215988 NA NA no change no change NA NA 6:70668716 6:13267835 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr6:57.34Mb]],inversion SMAP1 NA TBC1D7 NA Oncogene NA NA NA NA -SMARCD3--AC006148.1 BS_68KX6A42 -0.408412413569131 NA NA NA no change NA NA NA 7:151275114 7:124349924 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr7:26.84Mb]],deletion/5'-5' SMARCD3 NA AC006148.1 NA NA NA NA NA NA -SMIM13--AIG1 BS_58YXHGAJ 0.118379689657494 -0.959094470828327 NA NA no change no change NA NA 6:11094389 6:143136835 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr6:131.92Mb]],deletion SMIM13 NA AIG1 NA NA NA NA NA NA -SMIM7--C1orf61 BS_PXCPK5XS 3.60943554975065 -0.228749275857458 NA NA differentially expressed no change NA NA 19:16647120 1:156404601 ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr19--chr1]],translocation SMIM7 NA C1orf61 NA NA NA NA NA NA -SND1--TMEM176B BS_68KX6A42 1.56807054183558 1.0943590515871 NA NA no change no change NA NA 7:127888464 7:150801078 STARFUSION other 12 9 NA [INTRACHROMOSOMAL[chr7:22.70Mb]] SND1 NA TMEM176B NA CosmicCensus NA NA NA NA -SND1--TMEM176B BS_68KX6A42 1.56807054183558 1.0943590515871 NA NA no change no change NA NA 7:127888464 7:150801078 ARRIBA other 25 12 medium [INTRACHROMOSOMAL[chr7:22.70Mb]],inversion SND1 NA TMEM176B NA CosmicCensus NA NA NA NA -SNHG14--CASC4 BS_X0XXN9BK -1.52813497617363 -1.35698194901313 NA NA no change no change NA NA 15:25278884 15:44413336 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:18.87Mb]],deletion SNHG14 NA CASC4 NA NA NA NA NA NA -SNHG14--SNURF BS_XGDPK33A -0.610343682882497 2.15127109807696 NA NA no change differentially expressed NA NA 15:25100890 15:24967932 ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_REARRANGEMENT:+:[733]],duplication SNHG14 NA SNURF NA NA NA NA NA NA -SNHG28--AL645474.1(328157)/AL136372.1(24406) BS_RX1YTZ7F NA NA NA NA NA NA NA NA 1:159854968 1:188042892 ARRIBA other 2 1 medium [],deletion SNHG28 NA AL645474.1 AL136372.1 NA NA NA NA NA -SNRNP40--MIR4477B(5516)/FRG1JP(6957) BS_W4H1D4Y6 1.44031857094673 NA NA NA no change NA NA NA 1:31261529 9:63825170 ARRIBA frameshift 4 0 medium [],translocation SNRNP40 NA MIR4477B FRG1JP NA NA NA NA NA -SNRPN--UBE3A BS_NGSG2KB6 -1.27666762981878 0.636721046537037 NA NA no change no change NA NA 15:24856716 15:25360527 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.36Mb]],inversion SNRPN NA UBE3A NA NA Oncogene NA NA NA -SNRPN--UBE3A BS_NGSG2KB6 -1.27666762981878 0.636721046537037 NA NA no change no change NA NA 15:24968082 15:25340228 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.36Mb]],inversion SNRPN NA UBE3A NA NA Oncogene NA NA NA -SNTA1--C1orf61 BS_ZF6BSFNF -0.599628515428632 0.2954433225817 NA NA no change no change NA NA 20:33438841 1:156404601 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr20--chr1]],translocation SNTA1 NA C1orf61 NA NA NA NA NA NA -SNX13--TRPM3 BS_HWGWYCY7 4.12994120319257 5.15187773655095 NA NA differentially expressed differentially expressed NA NA 7:17801588 9:70761724 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr7--chr9]],translocation SNX13 NA TRPM3 NA NA NA NA NA NA -SNX18--ARL15 BS_JB43XBCQ 3.70033575761985 1.6852321057606 NA NA differentially expressed no change NA NA 5:54519573 5:54287065 ARRIBA frameshift 4 3 high [INTRACHROMOSOMAL[chr5:0.21Mb]],duplication/5'-5' SNX18 NA ARL15 NA NA NA NA NA NA -SNX30--KIAA1958 BS_EZ3147MX 0.378858308434796 5.07261819803835 NA NA no change differentially expressed NA NA 9:112817815 9:112617871 ARRIBA frameshift 17 5 high [YOSHIHARA_TCGA,GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr9:0.08Mb],LOCAL_REARRANGEMENT:+:[81441]],duplication SNX30 NA KIAA1958 NA NA NA NA NA TCGAFusion -SNX30--KIAA1958 BS_EZ3147MX 0.378858308434796 5.07261819803835 NA NA no change differentially expressed NA NA 9:112817815 9:112645650 ARRIBA frameshift 1 1 medium [YOSHIHARA_TCGA,GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr9:0.08Mb],LOCAL_REARRANGEMENT:+:[81441]],duplication SNX30 NA KIAA1958 NA NA NA NA NA TCGAFusion -SNX9--AL024474.2 BS_JGA9BP3A -2.15119752135718 NA NA NA differentially expressed NA NA NA 6:157823446 6:144313145 ARRIBA frameshift 13 5 high [INTRACHROMOSOMAL[chr6:13.37Mb]],inversion SNX9 NA AL024474.2 NA NA NA NA NA NA -SNX9--TPT1P4(12266)/AL024474.1(43803) BS_JGA9BP3A -2.15119752135718 5.34794142242257 NA NA differentially expressed differentially expressed NA NA 6:157823446 6:144213231 ARRIBA frameshift 2 0 high [],inversion SNX9 NA TPT1P4 AL024474.1 NA NA NA NA NA -SNX9--UTRN BS_JGA9BP3A -2.15119752135718 1.19045167672314 NA NA differentially expressed no change NA NA 6:157823446 6:144313145 ARRIBA frameshift 13 5 high [INTRACHROMOSOMAL[chr6:12.85Mb]],inversion/3'-3' SNX9 NA UTRN NA NA NA NA NA NA -SOBP--Z97206.1(203386)/RN7SKP211(32989) BS_58YXHGAJ 0.809272282687653 NA NA 127.200425705054 no change NA NA differentially expressed 6:107589865 6:105871384 ARRIBA other 26 17 medium [],duplication SOBP NA Z97206.1 RN7SKP211 NA NA NA NA NA -SORD--AC091078.1 BS_68KX6A42 5.02571840898034 NA NA NA differentially expressed NA NA NA 15:45023349 15:93498521 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr15:48.24Mb]],deletion SORD NA AC091078.1 NA NA NA NA NA NA -SORD--AC091078.1 BS_68KX6A42 5.02571840898034 NA NA NA differentially expressed NA NA NA 15:45023349 15:93496234 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:48.24Mb]],deletion SORD NA AC091078.1 NA NA NA NA NA NA -SOX6--C11orf58 BS_NGSG2KB6 5.15454738641367 1.32946349535345 NA NA differentially expressed no change NA NA 11:16465701 11:16744601 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.13Mb]],inversion SOX6 NA C11orf58 NA TranscriptionFactor NA NA NA NA -SPAG9--AKAP10 BS_NGSG2KB6 1.76289647049614 -0.602733386869675 NA NA no change no change NA NA 17:51079584 17:19946305 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr17:30.98Mb]],inversion/5'-5' SPAG9 NA AKAP10 NA NA NA NA NA NA -SPARC--CHI3L1 BS_BYCX6VK1 3.56774751758711 3.81362275209601 NA NA differentially expressed differentially expressed NA NA 5:151664087 1:203179877 STARFUSION frameshift 1 8 NA [INTERCHROMOSOMAL[chr5--chr1]] SPARC NA CHI3L1 NA TumorSuppressorGene NA NA NA NA -SPATA20--SPAG9 BS_NGSG2KB6 0.0461350376715089 1.76289647049614 NA NA no change no change NA NA 17:50554450 17:51056482 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr17:0.41Mb]],inversion SPATA20 NA SPAG9 NA NA NA NA NA NA -SPATS2L--SLC25A12 BS_ZD5HN296 1.23697042940306 -0.532036998890951 NA NA no change no change NA NA 2:200389283 2:171893258 STARFUSION in-frame 6 1 NA [INTRACHROMOSOMAL[chr2:28.31Mb]] SPATS2L NA SLC25A12 NA NA NA NA NA NA -SPATS2L--SLC25A12 BS_ZD5HN296 1.23697042940306 -0.532036998890951 NA NA no change no change NA NA 2:200389283 2:171893258 ARRIBA in-frame 6 1 high [INTRACHROMOSOMAL[chr2:28.31Mb]],inversion SPATS2L NA SLC25A12 NA NA NA NA NA NA -SPECC1--AP001001.1(5416)/AP001001.2(5068) BS_6M2053M0 0.75943259762264 NA NA NA no change NA NA NA 17:20009424 11:106107391 ARRIBA other 2 0 medium [],translocation SPECC1 NA AP001001.1 AP001001.2 CosmicCensus, Oncogene NA NA NA NA -SPPL2B--HTT BS_JB43XBCQ -0.892574265708022 0.206137784758658 NA NA no change no change NA NA 19:2351511 4:3230370 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr19--chr4]],translocation/5'-5' SPPL2B NA HTT NA Oncogene NA NA NA NA -SPRY4-AS1--AL035425.1(22376)/RNU6-309P(65485) BS_W4H1D4Y6 NA NA NA NA NA NA NA NA 5:142581914 X:108761279 ARRIBA other 7 6 high [],translocation SPRY4-AS1 NA AL035425.1 RNU6-309P NA NA NA NA NA -SPTBN4--PEPD BS_X4DD4KSZ -1.37083016690218 2.09190429172779 NA NA no change differentially expressed NA NA 19:40534343 19:33387481 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr19:6.94Mb]],inversion SPTBN4 NA PEPD NA NA NA NA NA NA -SRCAP--SRRM2 BS_W1385R8Y -0.745812792516335 0.291078897584339 NA NA no change no change NA NA 16:30716479 16:2770352 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr16:27.93Mb]],duplication SRCAP NA SRRM2 NA TranscriptionFactor NA NA NA NA -SRSF4--LRRC69 BS_T3DGY9J9 0.43536355823783 -0.187570942702967 NA NA no change no change NA NA 1:29181646 8:91189522 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr1--chr8]],translocation SRSF4 NA LRRC69 NA NA NA NA NA NA -SSBP1--CADPS2 BS_68KX6A42 2.11916272475531 -0.571847246088688 NA NA differentially expressed no change NA NA 7:141750384 7:122325581 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr7:18.85Mb]],inversion SSBP1 NA CADPS2 NA NA Oncogene NA NA NA -SSBP1--CADPS2 BS_68KX6A42 2.11916272475531 -0.571847246088688 NA NA differentially expressed no change NA NA 7:141750384 7:122320338 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr7:18.85Mb]],inversion SSBP1 NA CADPS2 NA NA Oncogene NA NA NA -SSBP3--C12orf45 BS_3AC3SRWH -1.14801426280196 -1.41130688766356 NA NA no change no change NA NA 1:54226568 12:105015357 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr1--chr12]],translocation SSBP3 NA C12orf45 NA Oncogene NA NA NA NA -SSH2--HS3ST3A1(62322)/COX10-AS1(92229) BS_S6Q7NKA3 1.80288449063246 8.54997507081014 NA 4.47046066935857 no change differentially expressed NA differentially expressed 17:29929938 17:13664249 ARRIBA frameshift 2 0 high [],inversion SSH2 NA HS3ST3A1 COX10-AS1 NA NA NA NA NA -SSH2--TRIM16L BS_S6Q7NKA3 1.80288449063246 2.7452246490091 NA NA no change differentially expressed NA NA 17:29929938 17:18699154 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr17:10.89Mb]],inversion SSH2 NA TRIM16L NA NA NA NA NA NA -ST20--CEMIP BS_W4H1D4Y6 0.451441599120259 3.16871519349232 NA NA no change differentially expressed NA NA 15:79923452 15:80906663 STARFUSION other 12 1 NA [INTRACHROMOSOMAL[chr15:0.86Mb]] ST20 NA CEMIP NA TumorSuppressorGene NA NA NA NA -ST20--CEMIP BS_W4H1D4Y6 0.451441599120259 3.16871519349232 NA NA no change differentially expressed NA NA 15:79923452 15:80906663 ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr15:0.86Mb]],inversion ST20 NA CEMIP NA TumorSuppressorGene NA NA NA NA -ST20-AS1--CEMIP BS_W4H1D4Y6 1.60657050408685 3.16871519349232 NA NA no change differentially expressed NA NA 15:79923143 15:80906663 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr15:0.85Mb]],inversion/3'-3' ST20-AS1 NA CEMIP NA NA NA NA NA NA -ST20-MTHFS--CEMIP BS_W4H1D4Y6 1.64221404266286 3.16871519349232 NA NA no change differentially expressed NA NA 15:79923452 15:80906663 STARFUSION frameshift 12 1 NA [INTRACHROMOSOMAL[chr15:0.86Mb]] ST20-MTHFS NA CEMIP NA NA NA NA NA NA -ST20-MTHFS--CEMIP BS_W4H1D4Y6 1.64221404266286 3.16871519349232 NA NA no change differentially expressed NA NA 15:79923452 15:80906663 ARRIBA frameshift 12 1 high [INTRACHROMOSOMAL[chr15:0.86Mb]],inversion ST20-MTHFS NA CEMIP NA NA NA NA NA NA -ST5--PAMR1 BS_ZD5HN296 2.30042061915244 2.10225784858257 NA NA differentially expressed differentially expressed NA NA 11:8810517 11:35494272 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr11:26.52Mb]],duplication ST5 NA PAMR1 NA TumorSuppressorGene, Oncogene NA NA NA NA -ST5--PAMR1 BS_ZD5HN296 2.30042061915244 2.10225784858257 NA NA differentially expressed differentially expressed NA NA 11:8810517 11:35513477 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:26.52Mb]],duplication ST5 NA PAMR1 NA TumorSuppressorGene, Oncogene NA NA NA NA -ST5--PAMR1 BS_ZD5HN296 2.30042061915244 2.10225784858257 NA NA differentially expressed differentially expressed NA NA 11:8810517 11:35528979 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:26.52Mb]],duplication ST5 NA PAMR1 NA TumorSuppressorGene, Oncogene NA NA NA NA -ST7--EEF1A1P28(16020)/AC002127.2(54195) BS_68KX6A42 0.693273102897807 1.40243399216158 NA -0.0475448513883556 no change no change NA no change 7:117020629 7:88656436 ARRIBA frameshift 2 1 high [],inversion ST7 NA EEF1A1P28 AC002127.2 TumorSuppressorGene NA NA NA NA -ST7--FOXL2NB(32790)/PRR23A(19227) BS_GWSJ4Z9H 0.718754589219064 1.1085173217319 NA -0.13179218818729 no change no change NA no change 7:116953691 3:138986241 ARRIBA frameshift 2 1 high [],translocation ST7 NA FOXL2NB PRR23A TumorSuppressorGene NA NA NA NA -ST7--MET BS_8ZY4GST0 0.603979128760003 2.73557462438209 NA NA no change differentially expressed NA NA 7:117119720 7:116699071 STARFUSION in-frame 13 7 NA [FA_CancerSupp,CCLE,ChimerSeq,YOSHIHARA_TCGA,INTRACHROMOSOMAL[chr7:0.15Mb]] ST7 NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -ST7--MET BS_8ZY4GST0 0.603979128760003 2.73557462438209 NA NA no change differentially expressed NA NA 7:117119720 7:116699071 ARRIBA in-frame 11 5 high [FA_CancerSupp,CCLE,ChimerSeq,YOSHIHARA_TCGA,INTRACHROMOSOMAL[chr7:0.15Mb]],duplication ST7 NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion -ST7--RNU6-1103P(10055)/MPP6(25775) BS_68KX6A42 0.693273102897807 NA NA -0.140039492134722 no change NA NA no change 7:117020629 7:24547493 ARRIBA frameshift 12 11 high [],duplication ST7 NA RNU6-1103P MPP6 TumorSuppressorGene NA NA NA NA -ST7--ZNF3 BS_68KX6A42 0.693273102897807 2.59074382613144 NA NA no change differentially expressed NA NA 7:116953691 7:100064912 ARRIBA in-frame 13 1 high [INTRACHROMOSOMAL[chr7:16.87Mb]],inversion ST7 NA ZNF3 NA TumorSuppressorGene TranscriptionFactor NA NA NA -ST7--ZNF3 BS_68KX6A42 0.693273102897807 2.59074382613144 NA NA no change differentially expressed NA NA 7:116954679 7:100064912 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr7:16.87Mb]],inversion ST7 NA ZNF3 NA TumorSuppressorGene TranscriptionFactor NA NA NA -ST7-OT4_1--ZNF3 BS_68KX6A42 -0.481728490656637 2.59074382613144 NA NA no change differentially expressed NA NA 7:116954679 7:100064912 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:16.87Mb]],inversion ST7-OT4_1 NA ZNF3 NA NA TranscriptionFactor NA NA NA -ST7-OT4_2--MRPS22 BS_GWSJ4Z9H 0.430265744754024 1.21755136307585 NA NA no change no change NA NA 7:116955153 3:139253145 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr7--chr3]],translocation/5'-5' ST7-OT4_2 NA MRPS22 NA NA NA NA NA NA -ST7-OT4_2--ZNF3 BS_68KX6A42 -0.472124104103309 2.59074382613144 NA NA no change differentially expressed NA NA 7:116955153 7:100064912 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr7:16.87Mb]],inversion ST7-OT4_2 NA ZNF3 NA NA TranscriptionFactor NA NA NA -ST7-OT4--MRPS22 BS_GWSJ4Z9H 1.54818973244062 1.21755136307585 NA NA no change no change NA NA 7:116955153 3:139253145 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr7--chr3]],translocation/5'-5' ST7-OT4 NA MRPS22 NA NA NA NA NA NA -ST7-OT4--ZNF3 BS_68KX6A42 0.0548626115608093 2.59074382613144 NA NA no change differentially expressed NA NA 7:116955153 7:100064912 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr7:16.87Mb]],inversion ST7-OT4 NA ZNF3 NA NA TranscriptionFactor NA NA NA -ST7-OT4--ZNF3 BS_68KX6A42 0.0548626115608093 2.59074382613144 NA NA no change differentially expressed NA NA 7:116954679 7:100064912 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:16.87Mb]],inversion ST7-OT4 NA ZNF3 NA NA TranscriptionFactor NA NA NA -ST8SIA2--PIK3C2G BS_GWSJ4Z9H 6.16390903556821 0.671982104819354 NA NA differentially expressed no change NA NA 15:92444929 12:18434019 ARRIBA frameshift 3 2 high [INTERCHROMOSOMAL[chr15--chr12]],translocation/5'-5' ST8SIA2 NA PIK3C2G NA NA Kinase NA NA NA -ST8SIA2--VCP BS_ZD5HN296 -0.613584697598626 1.60219251356436 NA NA no change no change NA NA 15:92393924 9:35072578 STARFUSION other 14 0 NA [FA_CancerSupp,INTERCHROMOSOMAL[chr15--chr9]] ST8SIA2 NA VCP NA NA NA NA NA NA -STAG1--APOD(16605)/MUC20P1(14137) BS_GWSJ4Z9H 2.21881422208357 0.924499929217149 NA NA differentially expressed no change NA NA 3:136623146 3:195600810 ARRIBA frameshift 4 0 high [],inversion STAG1 NA APOD MUC20P1 CosmicCensus, Oncogene NA NA NA NA -STAG2--AC083902.1 BS_W1385R8Y -3.51557699855628 NA NA NA differentially expressed NA NA NA X:123961856 4:99595594 STARFUSION other 26 14 NA [INTERCHROMOSOMAL[chrX--chr4]] STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA -STAG2--AC083902.1 BS_W1385R8Y -3.51557699855628 NA NA NA differentially expressed NA NA NA X:123960866 4:99595594 STARFUSION other 17 14 NA [INTERCHROMOSOMAL[chrX--chr4]] STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA -STAG2--AC083902.1 BS_W1385R8Y -3.51557699855628 NA NA NA differentially expressed NA NA NA X:123961856 4:99595641 STARFUSION other 14 14 NA [INTERCHROMOSOMAL[chrX--chr4]] STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA -STAG2--AC083902.1 BS_W1385R8Y -3.51557699855628 NA NA NA differentially expressed NA NA NA X:123962106 4:99595641 STARFUSION other 10 14 NA [INTERCHROMOSOMAL[chrX--chr4]] STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA -STAG2--AC083902.1 BS_W1385R8Y -3.51557699855628 NA NA NA differentially expressed NA NA NA X:123960866 4:99595641 STARFUSION other 8 14 NA [INTERCHROMOSOMAL[chrX--chr4]] STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA -STAG2--AC083902.1 BS_W1385R8Y -3.51557699855628 NA NA NA differentially expressed NA NA NA X:123961856 4:99594881 STARFUSION other 6 14 NA [INTERCHROMOSOMAL[chrX--chr4]] STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA -STAG2--AC083902.1 BS_W1385R8Y -3.51557699855628 NA NA NA differentially expressed NA NA NA X:123961856 4:99595594 ARRIBA other 26 9 high [INTERCHROMOSOMAL[chrX--chr4]],translocation STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA -STAG2--AC083902.1 BS_W1385R8Y -3.51557699855628 NA NA NA differentially expressed NA NA NA X:123961856 4:99595641 ARRIBA other 14 12 high [INTERCHROMOSOMAL[chrX--chr4]],translocation STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA -STAG2--AC083902.1 BS_W1385R8Y -3.51557699855628 NA NA NA differentially expressed NA NA NA X:123962106 4:99595641 ARRIBA other 10 12 high [INTERCHROMOSOMAL[chrX--chr4]],translocation STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA -STAG2--AC083902.1 BS_W1385R8Y -3.51557699855628 NA NA NA differentially expressed NA NA NA X:123960866 4:99595641 ARRIBA other 7 7 high [INTERCHROMOSOMAL[chrX--chr4]],translocation STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA -STAG2--AC083902.1 BS_W1385R8Y -3.51557699855628 NA NA NA differentially expressed NA NA NA X:123960866 4:99594881 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chrX--chr4]],translocation STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA -STAG2--AC083902.1 BS_W1385R8Y -3.51557699855628 NA NA NA differentially expressed NA NA NA X:123961856 4:99594881 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chrX--chr4]],translocation STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA -STAG2--C4orf22 BS_W1385R8Y -3.51557699855628 -0.315174225514855 NA NA differentially expressed no change NA NA X:123961856 4:80807101 ARRIBA other 16 7 high [INTERCHROMOSOMAL[chrX--chr4]],translocation/5'-5' STAG2 NA C4orf22 NA CosmicCensus, Oncogene NA NA NA NA -STAG2--MTTP BS_W1385R8Y -3.51557699855628 6.31611209281164 NA NA differentially expressed differentially expressed NA NA X:123961856 4:99594881 ARRIBA other 6 3 high [INTERCHROMOSOMAL[chrX--chr4]],translocation/5'-5' STAG2 NA MTTP NA CosmicCensus, Oncogene NA NA NA NA -STARD3NL--GRM8 BS_68KX6A42 2.07403982766862 -0.413295027453208 NA NA differentially expressed no change NA NA 7:38207087 7:126533887 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr7:88.21Mb]],duplication/3'-3' STARD3NL NA GRM8 NA NA NA NA NA NA -STIL--PPP2CA BS_21ET39G7 2.98097418231983 1.44500319157731 NA NA differentially expressed no change NA NA 1:47310276 5:134206131 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr1--chr5]],translocation STIL NA PPP2CA NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA -STK17A--MYL10(102429)/CUX1(84179) BS_68KX6A42 4.81180058502878 -0.254972929819628 NA 0.455056710978962 differentially expressed no change NA no change 7:43608400 7:101731725 ARRIBA frameshift 88 23 high [],deletion STK17A NA MYL10 CUX1 Kinase NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA -STK17A--RPL6P21(5813)/DGKB(67856) BS_68KX6A42 4.81180058502878 NA NA -0.559376118430487 differentially expressed NA NA no change 7:43608400 7:14077193 ARRIBA frameshift 41 6 high [],duplication STK17A NA RPL6P21 DGKB Kinase NA NA Kinase NA -STRIP2--HECW1 BS_68KX6A42 -0.00114401829004974 -1.07643652617886 NA NA no change no change NA NA 7:129470715 7:43442828 ARRIBA frameshift 1 3 high [INTRACHROMOSOMAL[chr7:85.87Mb]],inversion/3'-3' STRIP2 NA HECW1 NA NA NA NA NA NA -STS--RPS27AP17 BS_RX1YTZ7F 1.07157257808412 NA NA NA no change NA NA NA X:7305183 X:6989335 STARFUSION other 13 4 NA [INTRACHROMOSOMAL[chrX:0.23Mb]] STS NA RPS27AP17 NA NA NA NA NA NA -STS--RPS27AP17(1123)/PUDP(58014) BS_RX1YTZ7F 1.07157257808412 NA NA NA no change NA NA NA X:7305183 X:6990906 ARRIBA frameshift 2 3 high [],duplication STS NA RPS27AP17 PUDP NA NA NA NA NA -STX18-AS1--AC092437.1 BS_RX1YTZ7F 1.79954559050447 NA NA NA no change NA NA NA 4:4544907 4:4820406 STARFUSION other 6 2 NA [INTRACHROMOSOMAL[chr4:0.11Mb]] STX18-AS1 NA AC092437.1 NA NA NA NA NA NA -STX1A--CALCR BS_GWSJ4Z9H -1.08378489302576 0.377640875259569 NA NA no change no change NA NA 7:73708589 7:93443757 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr7:19.70Mb]],duplication STX1A NA CALCR NA NA Oncogene NA NA NA -STX5--GRB2 BS_PS0P3QJ3 -1.82668881106069 1.06823297586655 NA NA no change no change NA NA 11:62824166 17:75332797 ARRIBA frameshift 1 1 high [INTERCHROMOSOMAL[chr11--chr17]],translocation STX5 NA GRB2 NA NA Oncogene NA NA NA -STX5--WDR74 BS_BMMY0H73 0.536318423299369 1.28283418483901 NA NA no change no change NA NA 11:62831954 11:62839659 STARFUSION other 22 2 NA [YOSHIHARA_TCGA,CCLE,ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[254]] STX5 NA WDR74 NA NA NA NA NA TCGAFusion -STX5--WDR74 BS_BMMY0H73 0.536318423299369 1.28283418483901 NA NA no change no change NA NA 11:62831954 11:62839867 STARFUSION other 7 2 NA [YOSHIHARA_TCGA,CCLE,ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[254]] STX5 NA WDR74 NA NA NA NA NA TCGAFusion -STX5--WDR74 BS_BMMY0H73 0.536318423299369 1.28283418483901 NA NA no change no change NA NA 11:62831954 11:62839659 ARRIBA other 22 1 high [YOSHIHARA_TCGA,CCLE,ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[254]],duplication STX5 NA WDR74 NA NA NA NA NA TCGAFusion -STX5--WDR74 BS_BMMY0H73 0.536318423299369 1.28283418483901 NA NA no change no change NA NA 11:62831954 11:62839867 ARRIBA other 7 0 medium [YOSHIHARA_TCGA,CCLE,ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[254]],duplication STX5 NA WDR74 NA NA NA NA NA TCGAFusion -STX5--WDR74 BS_BMMY0H73 0.536318423299369 1.28283418483901 NA NA no change no change NA NA 11:62831954 11:62839706 ARRIBA other 2 0 low [YOSHIHARA_TCGA,CCLE,ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[254]],duplication STX5 NA WDR74 NA NA NA NA NA TCGAFusion -STX8--CRLF3 BS_S6Q7NKA3 -0.32138065711289 1.78830043181558 NA NA no change no change NA NA 17:9545172 17:30804108 ARRIBA frameshift 8 3 high [INTRACHROMOSOMAL[chr17:21.19Mb]],duplication STX8 NA CRLF3 NA NA NA NA NA NA -STX8--DUX4L2(26082)/DUX4(55413) BS_H97S5SQN 5.14576582724774 NA NA -0.595069764557869 differentially expressed NA NA no change 17:9491829 4:190118361 ARRIBA frameshift 5 4 medium [],translocation STX8 NA DUX4L2 DUX4 NA NA NA Oncogene, TranscriptionFactor NA -STX8--NTN1 BS_PXCPK5XS 1.00573940751632 5.54142292337661 NA NA no change differentially expressed NA NA 17:9378552 17:9162813 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr17:0.01Mb],LOCAL_INVERSION:-:+:[6471]],inversion STX8 NA NTN1 NA NA NA NA NA NA -STXBP5--CASC15 BS_58YXHGAJ -0.758982947619632 3.36643509503579 NA NA no change differentially expressed NA NA 6:147301644 6:22324235 ARRIBA other 5 5 medium [INTRACHROMOSOMAL[chr6:124.84Mb]],inversion/3'-3' STXBP5 NA CASC15 NA NA NA NA NA NA -STYX--AC008780.2(61558)/AC106822.1(72203) BS_KBEX4RT2 2.63996827734346 NA NA NA differentially expressed NA NA NA 14:52730531 5:57678989 ARRIBA frameshift 11 4 high [],translocation STYX NA AC008780.2 AC106822.1 NA NA NA NA NA -STYX--ADAMTS2 BS_KBEX4RT2 2.63996827734346 0.913463464117849 NA NA differentially expressed no change NA NA 14:52730531 5:179321159 ARRIBA frameshift 7 0 medium [INTERCHROMOSOMAL[chr14--chr5]],translocation/5'-5' STYX NA ADAMTS2 NA NA NA NA NA NA -STYX--LINC02225(85595)/LINC02101(123325) BS_KBEX4RT2 2.63996827734346 NA NA NA differentially expressed NA NA NA 14:52730531 5:57984757 ARRIBA frameshift 4 1 high [],translocation STYX NA LINC02225 LINC02101 NA NA NA NA NA -SUN1--FAM20C BS_RX1YTZ7F 0.0140767034455055 4.1882172808331 NA NA no change differentially expressed NA NA 7:866067 7:255849 ARRIBA frameshift 1 0 low [GTEx,INTRACHROMOSOMAL[chr7:0.56Mb]],duplication SUN1 NA FAM20C NA NA NA NA NA NA -SYNJ1--LTN1 BS_W4H1D4Y6 -0.785873926515683 1.69610571491861 NA NA no change no change NA NA 21:32694228 21:28962593 ARRIBA frameshift 15 3 high [INTRACHROMOSOMAL[chr21:3.64Mb]],inversion/5'-5' SYNJ1 NA LTN1 NA NA NA NA NA NA -TAF7--PCDHGA1 BS_PXCPK5XS 2.30250687730457 4.97427549800846 NA NA differentially expressed differentially expressed NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_INVERSION:-:+:[9750]],inversion TAF7 NA PCDHGA1 NA NA NA NA NA NA -TAF7--PCDHGA10 BS_PXCPK5XS 2.30250687730457 -0.620173296949645 NA NA differentially expressed no change NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.09Mb],LOCAL_INVERSION:-:+:[92166]],inversion TAF7 NA PCDHGA10 NA NA NA NA NA NA -TAF7--PCDHGA11 BS_PXCPK5XS 2.30250687730457 0.261639158171158 NA NA differentially expressed no change NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.10Mb]],inversion TAF7 NA PCDHGA11 NA NA NA NA NA NA -TAF7--PCDHGA12 BS_PXCPK5XS 2.30250687730457 -0.501031983891092 NA NA differentially expressed no change NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.11Mb]],inversion TAF7 NA PCDHGA12 NA NA NA NA NA NA -TAF7--PCDHGA2 BS_PXCPK5XS 2.30250687730457 4.56772859137636 NA NA differentially expressed differentially expressed NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.02Mb],LOCAL_INVERSION:-:+:[17939]],inversion TAF7 NA PCDHGA2 NA NA NA NA NA NA -TAF7--PCDHGA3 BS_PXCPK5XS 2.30250687730457 -0.698842839439021 NA NA differentially expressed no change NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.02Mb],LOCAL_INVERSION:-:+:[23008]],inversion TAF7 NA PCDHGA3 NA NA NA NA NA NA -TAF7--PCDHGA4 BS_PXCPK5XS 2.30250687730457 3.45086033748971 NA NA differentially expressed differentially expressed NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.03Mb],LOCAL_INVERSION:-:+:[34219]],inversion TAF7 NA PCDHGA4 NA NA NA NA NA NA -TAF7--PCDHGA5 BS_PXCPK5XS 2.30250687730457 0.944758790570577 NA NA differentially expressed no change NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_INVERSION:-:+:[43411]],inversion TAF7 NA PCDHGA5 NA NA NA NA NA NA -TAF7--PCDHGA6 BS_PXCPK5XS 2.30250687730457 1.20890189460749 NA NA differentially expressed no change NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.05Mb],LOCAL_INVERSION:-:+:[53172]],inversion TAF7 NA PCDHGA6 NA NA NA NA NA NA -TAF7--PCDHGA7 BS_PXCPK5XS 2.30250687730457 0.627848307975554 NA NA differentially expressed no change NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.06Mb],LOCAL_INVERSION:-:+:[61918]],inversion TAF7 NA PCDHGA7 NA NA NA NA NA NA -TAF7--PCDHGA8 BS_PXCPK5XS 2.30250687730457 7.04179869902773 NA NA differentially expressed differentially expressed NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.07Mb],LOCAL_INVERSION:-:+:[69336]],inversion TAF7 NA PCDHGA8 NA NA NA NA NA NA -TAF7--PCDHGA9 BS_PXCPK5XS 2.30250687730457 -0.423391444638924 NA NA differentially expressed no change NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.08Mb],LOCAL_INVERSION:-:+:[82111]],inversion TAF7 NA PCDHGA9 NA NA NA NA NA NA -TAF7--PCDHGB1 BS_PXCPK5XS 2.30250687730457 7.49503564940446 NA NA differentially expressed differentially expressed NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.03Mb],LOCAL_INVERSION:-:+:[29281]],inversion TAF7 NA PCDHGB1 NA NA NA NA NA NA -TAF7--PCDHGB2 BS_PXCPK5XS 2.30250687730457 4.05691753630943 NA NA differentially expressed differentially expressed NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_INVERSION:-:+:[39221]],inversion TAF7 NA PCDHGB2 NA NA NA NA NA NA -TAF7--PCDHGB3 BS_PXCPK5XS 2.30250687730457 3.40894858360294 NA NA differentially expressed differentially expressed NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.05Mb],LOCAL_INVERSION:-:+:[49574]],inversion TAF7 NA PCDHGB3 NA NA NA NA NA NA -TAF7--PCDHGB4 BS_PXCPK5XS 2.30250687730457 6.85475365783085 NA NA differentially expressed differentially expressed NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.07Mb],LOCAL_INVERSION:-:+:[66877]],inversion TAF7 NA PCDHGB4 NA NA NA NA NA NA -TAF7--PCDHGB5 BS_PXCPK5XS 2.30250687730457 4.82176967738418 NA NA differentially expressed differentially expressed NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.08Mb],LOCAL_INVERSION:-:+:[77166]],inversion TAF7 NA PCDHGB5 NA NA NA NA NA NA -TAF7--PCDHGB6 BS_PXCPK5XS 2.30250687730457 -0.0798594889717214 NA NA differentially expressed no change NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.09Mb],LOCAL_INVERSION:-:+:[87200]],inversion TAF7 NA PCDHGB6 NA NA NA NA NA NA -TAF7--PCDHGB7 BS_PXCPK5XS 2.30250687730457 1.12710516564974 NA NA differentially expressed no change NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.10Mb],LOCAL_INVERSION:-:+:[96824]],inversion TAF7 NA PCDHGB7 NA NA NA NA NA NA -TAF7--PCDHGC3 BS_PXCPK5XS 2.30250687730457 -1.54518335661983 NA NA differentially expressed no change NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.16Mb]],inversion TAF7 NA PCDHGC3 NA NA TumorSuppressorGene NA NA NA -TAF7--PCDHGC4 BS_PXCPK5XS 2.30250687730457 -1.34785415225724 NA NA differentially expressed no change NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.16Mb]],inversion TAF7 NA PCDHGC4 NA NA NA NA NA NA -TAF7--PCDHGC5 BS_PXCPK5XS 2.30250687730457 0.150671062060449 NA NA differentially expressed no change NA NA 5:141320518 5:141494807 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.17Mb]],inversion TAF7 NA PCDHGC5 NA NA NA NA NA NA -TANGO2--5_8S_rRNA(48321)/AC116618.1(1304186) BS_JGA9BP3A -2.1404102729775 -0.0294627825494395 NA NA differentially expressed no change NA NA 22:20043443 22:11298280 ARRIBA frameshift 12 3 high [],inversion TANGO2 NA 5_8S_rRNA AC116618.1 NA NA NA NA NA -TAPBP--COX11P1(1499)/Z98745.1(6342) BS_BMMY0H73 1.6730958737304 17.0258367909573 NA NA no change differentially expressed NA NA 6:33313217 6:28449306 ARRIBA frameshift 15 4 high [],deletion TAPBP NA COX11P1 Z98745.1 NA NA NA NA NA -TAPBP--GPX6 BS_BMMY0H73 1.6730958737304 61.8422125510704 NA NA no change differentially expressed NA NA 6:33313217 6:28504498 STARFUSION frameshift 24 13 NA [INTRACHROMOSOMAL[chr6:4.77Mb]] TAPBP NA GPX6 NA NA NA NA NA NA -TAPBP--GPX6 BS_BMMY0H73 1.6730958737304 61.8422125510704 NA NA no change differentially expressed NA NA 6:33313217 6:28504498 ARRIBA frameshift 24 11 high [INTRACHROMOSOMAL[chr6:4.77Mb]],deletion TAPBP NA GPX6 NA NA NA NA NA NA -TAPBP--GPX6 BS_BMMY0H73 1.6730958737304 61.8422125510704 NA NA no change differentially expressed NA NA 6:33313694 6:28504498 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:4.77Mb]],deletion TAPBP NA GPX6 NA NA NA NA NA NA -TAPBP--Z98745.1(21749)/GPX6(25406) BS_BMMY0H73 1.6730958737304 NA NA 61.8422125510704 no change NA NA differentially expressed 6:33313217 6:28477890 ARRIBA frameshift 7 3 high [],deletion TAPBP NA Z98745.1 GPX6 NA NA NA NA NA -TBC1D7--LRRC1 BS_58YXHGAJ 0.669652551215988 1.17646732292873 NA NA no change no change NA NA 6:13294796 6:53913854 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr6:40.47Mb]],inversion TBC1D7 NA LRRC1 NA NA NA NA NA NA -TBC1D7--LRRC1 BS_58YXHGAJ 0.669652551215988 1.17646732292873 NA NA no change no change NA NA 6:13305062 6:53913854 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr6:40.47Mb]],inversion TBC1D7 NA LRRC1 NA NA NA NA NA NA -TBPL1--AL353596.1 BS_58YXHGAJ 0.129896131439085 NA NA NA no change NA NA NA 6:133984671 6:135058289 ARRIBA frameshift 11 3 high [INTRACHROMOSOMAL[chr6:1.06Mb]],inversion/3'-3' TBPL1 NA AL353596.1 NA TranscriptionFactor NA NA NA NA -TBPL1--HBS1L BS_58YXHGAJ 0.129896131439085 0.303696301605903 NA NA no change no change NA NA 6:133984671 6:135058289 ARRIBA frameshift 11 3 high [INTRACHROMOSOMAL[chr6:0.97Mb]],inversion TBPL1 NA HBS1L NA TranscriptionFactor NA NA NA NA -TBPL1--HBS1L BS_58YXHGAJ 0.129896131439085 0.303696301605903 NA NA no change no change NA NA 6:133984671 6:135050647 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr6:0.97Mb]],inversion TBPL1 NA HBS1L NA TranscriptionFactor NA NA NA NA -TDG--TMEM132B BS_EZ3147MX 0.761565350308349 2.9270684159017 NA NA no change differentially expressed NA NA 12:103987050 12:125218621 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA -TDRP--DEPTOR BS_BMMY0H73 -0.21249141580337 0.152362537453076 NA NA no change no change NA NA 8:544650 8:120001525 STARFUSION frameshift 12 4 NA [INTRACHROMOSOMAL[chr8:119.33Mb]] TDRP NA DEPTOR NA NA NA NA NA NA -TDRP--DEPTOR BS_BMMY0H73 -0.21249141580337 0.152362537453076 NA NA no change no change NA NA 8:544650 8:120001525 ARRIBA frameshift 7 4 high [INTRACHROMOSOMAL[chr8:119.33Mb]],inversion TDRP NA DEPTOR NA NA NA NA NA NA -TEF(15185)/AL008582.1(16423)--CCDC134 BS_JGA9BP3A -1.12964419942016 1.76129247925481 NA NA no change no change NA NA 22:41414511 22:41825698 ARRIBA other 2 1 high [],deletion TEF AL008582.1 CCDC134 NA TranscriptionFactor NA NA NA NA -TFAM--TFAM(1055)/BICC1(112864) BS_685DACMS 4.91218733817049 4.91218733817049 NA 5.13275228822412 differentially expressed differentially expressed NA differentially expressed 10:58398180 10:58400276 ARRIBA other 2 1 medium [],duplication TFAM NA TFAM BICC1 NA NA NA NA NA -THADA--AL445687.2(46225)/RNU6-716P(52632) BS_S6Q7NKA3 2.78943937854425 NA NA NA differentially expressed NA NA NA 2:43581741 1:199955873 ARRIBA frameshift 6 1 high [],translocation THADA NA AL445687.2 RNU6-716P Oncogene NA NA NA NA -THOC1--AP001011.1(13703)/EMILIN2(262) BS_BMMY0H73 -0.403927849989579 NA NA 3.07479231920045 no change NA NA differentially expressed 18:218886 18:2846768 ARRIBA frameshift 2 0 high [],duplication THOC1 NA AP001011.1 EMILIN2 NA NA NA NA NA -THOC1--RN7SKP141(29678)/SMC4P1(124365) BS_BMMY0H73 -0.403927849989579 NA NA NA no change NA NA NA 18:218886 2:136420347 ARRIBA frameshift 2 0 medium [],translocation THOC1 NA RN7SKP141 SMC4P1 NA NA NA NA NA -THOC5--WDR27 BS_JGA9BP3A 1.77437813106906 1.70496469177598 NA NA no change no change NA NA 22:29511106 6:169457634 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation THOC5 NA WDR27 NA Oncogene NA NA NA NA -THSD4--LINC00930 BS_68KX6A42 -0.660182621948371 2.4170247207242 NA NA no change differentially expressed NA NA 15:71411823 15:92570273 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr15:20.78Mb]],inversion THSD4 NA LINC00930 NA NA NA NA NA NA -THSD4--PCSK6 BS_68KX6A42 -0.660182621948371 -0.989180199045618 NA NA no change no change NA NA 15:71765199 15:101476293 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr15:29.51Mb]],deletion/5'-5' THSD4 NA PCSK6 NA NA NA NA NA NA -TIAM1--LINC01695 BS_W4H1D4Y6 0.842434176501844 NA NA NA no change NA NA NA 21:31558927 21:28158332 ARRIBA other 7 2 high [INTRACHROMOSOMAL[chr21:2.89Mb]],inversion/5'-5' TIAM1 NA LINC01695 NA Oncogene NA NA NA NA -TIMM10B--LMO2(87951)/CAPRIN1(71443) BS_ZD5HN296 1.45702175506524 2.33173763996533 NA 1.67151300021531 no change differentially expressed NA no change 11:6481852 11:33980240 ARRIBA frameshift 3 3 high [],inversion TIMM10B NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA -TJP1--UBE3A BS_PXCPK5XS 1.46572226707158 1.73640528833582 NA NA no change no change NA NA 15:29761139 15:25405502 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr15:4.26Mb]],deletion TJP1 NA UBE3A NA NA Oncogene NA NA NA -TM7SF3--LINC02443(27054)/AC006206.2(20275) BS_ZD5HN296 4.26246911129935 NA NA NA differentially expressed NA NA NA 12:26995237 12:5270205 ARRIBA frameshift 4 1 medium [],inversion TM7SF3 NA LINC02443 AC006206.2 NA NA NA NA NA -TMBIM6--CXXC5 BS_W4H1D4Y6 2.36023656346926 1.63972948988479 NA NA differentially expressed no change NA NA 12:49753081 5:139680364 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr5]],translocation TMBIM6 NA CXXC5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA -TMCC3--MIR3974(22114)/Y_RNA(15426) BS_W4H1D4Y6 2.87288150292601 NA NA -0.162236315085263 differentially expressed NA NA no change 12:94650353 12:17695508 ARRIBA frameshift 10 6 high [],inversion TMCC3 NA MIR3974 Y_RNA NA NA NA NA NA -TMCC3--TIMM17BP1(2021)/LINC02378(106418) BS_W4H1D4Y6 2.87288150292601 -0.0738081942884854 NA NA differentially expressed no change NA NA 12:94650353 12:17402935 ARRIBA frameshift 10 5 high [],inversion TMCC3 NA TIMM17BP1 LINC02378 NA NA NA NA NA -TMED3--UNC45A BS_W4H1D4Y6 2.39212781795354 0.954747763866723 NA NA differentially expressed no change NA NA 15:79314005 15:90935544 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr15:11.50Mb]],deletion TMED3 NA UNC45A NA NA NA NA NA NA -TMEM117--PPHLN1 BS_H97S5SQN 3.08152400101286 0.92800824807784 NA NA differentially expressed no change NA NA 12:44211387 12:42441315 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:1.38Mb]],duplication TMEM117 NA PPHLN1 NA NA NA NA NA NA -TMEM117--PPHLN1 BS_H97S5SQN 3.08152400101286 0.92800824807784 NA NA differentially expressed no change NA NA 12:43844928 12:42398854 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:1.38Mb]],duplication TMEM117 NA PPHLN1 NA NA NA NA NA NA -TMEM165--CHIC2 BS_8ZY4GST0 1.31788203480811 5.42452490377513 NA NA no change differentially expressed NA NA 4:55396396 4:54014119 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr4:1.33Mb]],inversion TMEM165 NA CHIC2 NA NA CosmicCensus, Oncogene NA NA NA -TMEM171--SNX18(91398)/AC016583.1(5574) BS_ZD5HN296 -0.304704219427969 2.96494983220404 NA NA no change differentially expressed NA NA 5:73124013 5:54637983 ARRIBA frameshift 2 0 medium [],inversion TMEM171 NA SNX18 AC016583.1 NA NA NA NA NA -TMEM184B--ELFN2 BS_JGA9BP3A -1.23588287411464 -0.534542474047994 NA NA no change no change NA NA 22:38245935 22:37377941 ARRIBA frameshift 33 3 high [INTRACHROMOSOMAL[chr22:0.79Mb]],inversion/5'-5' TMEM184B NA ELFN2 NA NA NA NA NA NA -TMEM184B--Z94160.2 BS_JGA9BP3A -1.23588287411464 NA NA NA no change NA NA NA 22:38245935 22:37372034 STARFUSION other 36 17 NA [INTRACHROMOSOMAL[chr22:0.85Mb]] TMEM184B NA Z94160.2 NA NA NA NA NA NA -TMEM184B--Z94160.2 BS_JGA9BP3A -1.23588287411464 NA NA NA no change NA NA NA 22:38245935 22:37372034 ARRIBA frameshift 36 17 high [INTRACHROMOSOMAL[chr22:0.85Mb]],inversion TMEM184B NA Z94160.2 NA NA NA NA NA NA -TMEM200A--ADTRP BS_58YXHGAJ -0.104651112700117 2.28533998343213 NA NA no change differentially expressed NA NA 6:130385236 6:11735683 STARFUSION other 7 2 NA [INTRACHROMOSOMAL[chr6:118.56Mb]] TMEM200A NA ADTRP NA NA NA NA NA NA -TMEM200A--ADTRP BS_58YXHGAJ -0.104651112700117 2.28533998343213 NA NA no change differentially expressed NA NA 6:130385236 6:11735683 ARRIBA other 6 2 high [INTRACHROMOSOMAL[chr6:118.56Mb]],inversion TMEM200A NA ADTRP NA NA NA NA NA NA -TMEM200A--ADTRP BS_58YXHGAJ -0.104651112700117 2.28533998343213 NA NA no change differentially expressed NA NA 6:130366524 6:11735683 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr6:118.56Mb]],inversion TMEM200A NA ADTRP NA NA NA NA NA NA -TMEM259--AC008764.8 BS_PXCPK5XS 1.06455774107063 NA NA NA no change NA NA NA 19:1011656 19:16572808 ARRIBA frameshift 4 4 medium [INTRACHROMOSOMAL[chr19:15.55Mb]],duplication/5'-5' TMEM259 NA AC008764.8 NA NA NA NA NA NA -TMEM259--ARHGAP45 BS_PXCPK5XS 1.06455774107063 NA NA NA no change NA NA NA 19:1010842 19:1081550 STARFUSION in-frame 55 32 NA [INTRACHROMOSOMAL[chr19:0.04Mb],LOCAL_INVERSION:-:+:[44744]] TMEM259 NA ARHGAP45 NA NA NA NA NA NA -TMEM259--ARHGAP45 BS_PXCPK5XS 1.06455774107063 NA NA NA no change NA NA NA 19:1011367 19:1081550 ARRIBA frameshift 1 4 low [INTRACHROMOSOMAL[chr19:0.04Mb],LOCAL_INVERSION:-:+:[44744]],inversion TMEM259 NA ARHGAP45 NA NA NA NA NA NA -TMEM260--VRK1 BS_4PWDGEB0 -0.464447624442126 -0.100264830615095 NA NA no change no change NA NA 14:56580074 14:96833467 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr14:40.15Mb]],deletion TMEM260 NA VRK1 NA NA Kinase, Oncogene, Kinase NA NA NA -TMEM266--CTSG BS_JB43XBCQ NA 5.30246947694754 NA NA NA differentially expressed NA NA 15:76060016 14:24576284 ARRIBA other 4 1 high [INTERCHROMOSOMAL[chr15--chr14]],translocation TMEM266 NA CTSG NA NA NA NA NA NA -TMEM33--KIT BS_GWSJ4Z9H 2.7844381538141 2.04860543624382 NA NA differentially expressed differentially expressed NA NA 4:41944926 4:54695654 ARRIBA frameshift 21 2 high [INTRACHROMOSOMAL[chr4:12.70Mb]],inversion/3'-3' TMEM33 NA KIT NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -TMEM5--PPM1H BS_BMMY0H73 4.46986497793904 -1.69083631455984 NA NA differentially expressed no change NA NA 12:63805872 12:62914338 ARRIBA other 2 4 medium [INTRACHROMOSOMAL[chr12:0.84Mb]],duplication/5'-5' TMEM5 NA PPM1H NA NA NA NA NA NA -TMPRSS3--TRAPPC10 BS_W1385R8Y 0.71614782197538 0.845631113721128 NA NA no change no change NA NA 21:42395104 21:44040621 ARRIBA other 6 2 medium [INTRACHROMOSOMAL[chr21:1.62Mb]],duplication/5'-5' TMPRSS3 NA TRAPPC10 NA Oncogene NA NA NA NA -TMTC3--RPL23AP68(161501)/AC079598.5(414637) BS_KBEX4RT2 2.25992164068731 NA NA NA differentially expressed NA NA NA 12:88142487 12:87331930 ARRIBA other 49 9 high [],duplication TMTC3 NA RPL23AP68 AC079598.5 NA NA NA NA NA -TNIK--AL035696.3 BS_BMMY0H73 1.1834857052103 NA NA NA no change NA NA NA 3:171369620 6:184140 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr3--chr6]],translocation/5'-5' TNIK NA AL035696.3 NA Kinase, Kinase NA NA NA NA -TNKS--MSRA BS_W4H1D4Y6 2.43591630502186 0.396741771808303 NA NA differentially expressed no change NA NA 8:9580383 8:10301533 ARRIBA frameshift 1 0 low [CCLE,INTRACHROMOSOMAL[chr8:0.27Mb]],deletion TNKS NA MSRA NA NA NA NA NA NA -TNPO3--SRPK1 BS_21ET39G7 0.57023464645122 0.204734364202762 NA NA no change no change NA NA 7:129054651 6:35857368 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr7--chr6]],translocation TNPO3 NA SRPK1 NA NA Kinase, Kinase NA NA NA -TNR--RFWD2 BS_C83TK159 4.39089956108166 1.04103402084496 NA NA differentially expressed no change NA NA 1:175528269 1:176046324 ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.20Mb]],duplication TNR NA RFWD2 NA Oncogene TumorSuppressorGene NA NA TCGAFusion -TNR--RFWD2 BS_Z3RCA1T9 5.75242495368341 2.72952521989191 NA NA differentially expressed differentially expressed NA NA 1:175528269 1:176027688 ARRIBA other 1 1 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.20Mb]],duplication TNR NA RFWD2 NA Oncogene TumorSuppressorGene NA NA TCGAFusion -TNR--RFWD2 BS_Z3RCA1T9 5.75242495368341 2.72952521989191 NA NA differentially expressed differentially expressed NA NA 1:175743226 1:176149074 ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.20Mb]],duplication TNR NA RFWD2 NA Oncogene TumorSuppressorGene NA NA TCGAFusion -TNRC6C--GRB2 BS_2JP7RBMB 0.0578223082237793 0.534807565026864 NA NA no change no change NA NA 17:78031842 17:75393765 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr17:2.55Mb]],inversion TNRC6C NA GRB2 NA NA Oncogene NA NA NA -TNS3--PDIA4 BS_JB43XBCQ 1.94597846421598 1.83101765675162 NA NA no change no change NA NA 7:47505318 7:149023053 ARRIBA other 7 2 medium [INTRACHROMOSOMAL[chr7:101.42Mb]],inversion/5'-5' TNS3 NA PDIA4 NA NA NA NA NA NA -TNS3--RNU6-650P(15773)/COX6B1P1(5021) BS_JB43XBCQ 1.94597846421598 NA NA 6.84063421921341 no change NA NA differentially expressed 7:47506907 7:149048940 ARRIBA frameshift 13 2 high [],inversion TNS3 NA RNU6-650P COX6B1P1 NA NA NA NA NA -TOLLIP--DIAPH3 BS_C83TK159 -1.12982633184579 1.70943261736849 NA NA no change no change NA NA 11:1295645 13:59774823 ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr11--chr13]],translocation TOLLIP NA DIAPH3 NA NA NA NA NA NA -TOLLIP--LINC00448 BS_C83TK159 -1.12982633184579 NA NA NA no change NA NA NA 11:1295645 13:62703733 ARRIBA frameshift 5 1 high [INTERCHROMOSOMAL[chr11--chr13]],translocation TOLLIP NA LINC00448 NA NA NA NA NA NA -TOM1L2--LINC01691(3524658)/AC242852.1(18237998) BS_HWGWYCY7 -2.78086309491787 NA NA NA differentially expressed NA NA NA 17:17844351 1:125105182 ARRIBA other 2 1 medium [],translocation TOM1L2 NA LINC01691 AC242852.1 TumorSuppressorGene NA NA NA NA -TOMM6--GRID1 BS_F0JB4EAK 0.392373041693512 0.267909532663567 NA NA no change no change NA NA 6:41789336 10:85729614 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr6--chr10]],translocation TOMM6 NA GRID1 NA NA NA NA NA NA -TP73--C1orf174 BS_X0XXN9BK 0.326230078613667 4.20910299009345 NA NA no change differentially expressed NA NA 1:3652641 1:3892996 STARFUSION other 55 8 NA [INTRACHROMOSOMAL[chr1:0.15Mb]] TP73 NA C1orf174 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA -TP73--C1orf174 BS_X0XXN9BK 0.326230078613667 4.20910299009345 NA NA no change differentially expressed NA NA 1:3652641 1:3892996 ARRIBA other 58 8 high [INTRACHROMOSOMAL[chr1:0.15Mb]],inversion TP73 NA C1orf174 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA -TP73--C1orf174 BS_X0XXN9BK 0.326230078613667 4.20910299009345 NA NA no change differentially expressed NA NA 1:3652641 1:3896183 ARRIBA other 1 8 high [INTRACHROMOSOMAL[chr1:0.15Mb]],inversion TP73 NA C1orf174 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA -TRAF3--TDRD9 BS_JB43XBCQ 0.71176278326829 -0.714001192578994 NA NA no change no change NA NA 14:102830472 14:103955664 STARFUSION other 7 2 NA [INTRACHROMOSOMAL[chr14:1.02Mb]] TRAF3 NA TDRD9 NA Oncogene NA NA NA NA -TRAF3--TDRD9 BS_JB43XBCQ 0.71176278326829 -0.714001192578994 NA NA no change no change NA NA 14:102830472 14:103955664 ARRIBA other 7 2 high [INTRACHROMOSOMAL[chr14:1.02Mb]],deletion TRAF3 NA TDRD9 NA Oncogene NA NA NA NA -TRAF3IP2-AS1--FYN BS_QKT3TJVK 3.0035573014548 3.08197627932546 NA NA differentially expressed differentially expressed NA NA 6:111483665 6:111720062 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr6:0.06Mb],LOCAL_INVERSION:+:-:[62030]],inversion TRAF3IP2-AS1 NA FYN NA NA Kinase, Oncogene, Kinase NA NA NA -TRAPPC10--LINC00322(25795)/LINC01679(313) BS_W1385R8Y 0.845631113721128 1.5621918694889 NA NA no change no change NA NA 21:44037927 21:43357834 ARRIBA frameshift 106 36 high [],duplication TRAPPC10 NA LINC00322 LINC01679 NA NA NA NA NA -TRAPPC10--LINC01679 BS_W1385R8Y 0.845631113721128 NA NA NA no change NA NA NA 21:44037927 21:43357834 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr21:0.65Mb]],duplication/5'-5' TRAPPC10 NA LINC01679 NA NA NA NA NA NA -TRGV7(1312)/TRGV6(3874)--KIAA1147 BS_68KX6A42 7.38872400525628 -0.346863089767241 -0.100443325728049 NA differentially expressed no change no change NA 7:38336826 7:141686547 ARRIBA other 13 1 medium [],deletion TRGV7 TRGV6 KIAA1147 NA NA Oncogene NA NA NA -TRIM37--CASP4 BS_6M2053M0 0.152553086248306 2.09228620789934 NA NA no change differentially expressed NA NA 17:59061093 11:104947689 ARRIBA frameshift 2 2 medium [INTERCHROMOSOMAL[chr17--chr11]],translocation TRIM37 NA CASP4 NA Oncogene NA NA NA NA -TRIM52--VPS29 BS_ZQ76ZBEX 0.101360923120006 1.56857788952687 NA NA no change no change NA NA 5:181260001 12:110496203 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr5--chr12]],translocation TRIM52 NA VPS29 NA NA NA NA NA NA -TRIO--RETREG1 BS_0VXZCRJS 3.00611327748066 NA NA NA differentially expressed NA NA NA 5:14420021 5:16483472 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:1.94Mb]],inversion TRIO NA RETREG1 NA Kinase, Oncogene, Kinase NA NA NA NA -TRIO--RETREG1 BS_0VXZCRJS 3.00611327748066 NA NA NA differentially expressed NA NA NA 5:14441360 5:16572102 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:1.94Mb]],inversion TRIO NA RETREG1 NA Kinase, Oncogene, Kinase NA NA NA NA -TRIP12--AGFG1 BS_X4DD4KSZ 2.87551448016286 2.2384373107735 NA NA differentially expressed differentially expressed NA NA 2:229879982 2:227531091 ARRIBA frameshift 1 0 low [ChimerSeq,INTRACHROMOSOMAL[chr2:2.20Mb]],inversion TRIP12 NA AGFG1 NA NA NA NA NA NA -TRIT1--AL603840.1 BS_W4H1D4Y6 0.0528613453874165 NA NA NA no change NA NA NA 1:39883318 1:55832264 STARFUSION other 14 7 NA [INTRACHROMOSOMAL[chr1:15.70Mb]] TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA -TRIT1--AL603840.1 BS_W4H1D4Y6 0.0528613453874165 NA NA NA no change NA NA NA 1:39853970 1:55832264 STARFUSION other 12 7 NA [INTRACHROMOSOMAL[chr1:15.70Mb]] TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA -TRIT1--AL603840.1 BS_W4H1D4Y6 0.0528613453874165 NA NA NA no change NA NA NA 1:39850119 1:55832264 STARFUSION other 7 7 NA [INTRACHROMOSOMAL[chr1:15.70Mb]] TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA -TRIT1--AL603840.1 BS_W4H1D4Y6 0.0528613453874165 NA NA NA no change NA NA NA 1:39852731 1:55832264 STARFUSION other 3 7 NA [INTRACHROMOSOMAL[chr1:15.70Mb]] TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA -TRIT1--AL603840.1 BS_W4H1D4Y6 0.0528613453874165 NA NA NA no change NA NA NA 1:39850123 1:55832264 STARFUSION other 3 7 NA [INTRACHROMOSOMAL[chr1:15.70Mb]] TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA -TRIT1--AL603840.1 BS_W4H1D4Y6 0.0528613453874165 NA NA NA no change NA NA NA 1:39883318 1:55832264 ARRIBA frameshift 14 2 high [INTRACHROMOSOMAL[chr1:15.70Mb]],inversion TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA -TRIT1--AL603840.1 BS_W4H1D4Y6 0.0528613453874165 NA NA NA no change NA NA NA 1:39853970 1:55832264 ARRIBA frameshift 11 3 high [INTRACHROMOSOMAL[chr1:15.70Mb]],inversion TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA -TRIT1--AL603840.1 BS_W4H1D4Y6 0.0528613453874165 NA NA NA no change NA NA NA 1:39850119 1:55832264 ARRIBA frameshift 7 5 high [INTRACHROMOSOMAL[chr1:15.70Mb]],inversion TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA -TRIT1--AL603840.1 BS_W4H1D4Y6 0.0528613453874165 NA NA NA no change NA NA NA 1:39850123 1:55832264 ARRIBA frameshift 4 4 high [INTRACHROMOSOMAL[chr1:15.70Mb]],inversion TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA -TRIT1--AL603840.1 BS_W4H1D4Y6 0.0528613453874165 NA NA NA no change NA NA NA 1:39850123 1:55731180 ARRIBA frameshift 1 7 high [INTRACHROMOSOMAL[chr1:15.70Mb]],inversion TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA -TRIT1--AL603840.1 BS_W4H1D4Y6 0.0528613453874165 NA NA NA no change NA NA NA 1:39852731 1:55832264 ARRIBA frameshift 3 3 high [INTRACHROMOSOMAL[chr1:15.70Mb]],inversion TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA -TRIT1--AL603840.1 BS_W4H1D4Y6 0.0528613453874165 NA NA NA no change NA NA NA 1:39883318 1:55731180 ARRIBA frameshift 1 5 high [INTRACHROMOSOMAL[chr1:15.70Mb]],inversion TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA -TRPM3--PARD6G BS_HWGWYCY7 5.15187773655095 3.48133761641261 NA NA differentially expressed differentially expressed NA NA 9:70811170 18:80202932 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr9--chr18]],translocation TRPM3 NA PARD6G NA NA NA NA NA NA -TRPM3--SNX13 BS_HWGWYCY7 5.15187773655095 4.12994120319257 NA NA differentially expressed differentially expressed NA NA 9:70784105 7:17816289 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr9--chr7]],translocation TRPM3 NA SNX13 NA NA NA NA NA NA -TSC22D4--TMEM178B BS_68KX6A42 -1.10726111341 0.665209793968493 NA NA no change no change NA NA 7:100477277 7:141366840 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr7:40.59Mb]],inversion TSC22D4 NA TMEM178B NA NA NA NA NA NA -TSPAN3--LINGO1-AS2 BS_W4H1D4Y6 2.04997041844363 17.9130851681843 NA NA differentially expressed differentially expressed NA NA 15:77052385 15:77666960 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:0.58Mb]],inversion TSPAN3 NA LINGO1-AS2 NA NA NA NA NA NA -TSPAN7--PRRG1 BS_R9B92M75 -0.464346827159302 2.04387947433476 NA NA no change differentially expressed NA NA X:38561627 X:37406209 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chrX:1.10Mb]],duplication TSPAN7 NA PRRG1 NA NA NA NA NA NA -TTBK1--AL008628.1(19314)/PSMB1(96478) BS_58YXHGAJ 0.130860477771676 NA NA 0.644143871297847 no change NA NA no change 6:43263350 6:170438639 ARRIBA frameshift 2 3 high [],deletion TTBK1 NA AL008628.1 PSMB1 Kinase, Kinase NA NA NA NA -TTBK1--HDAC2-AS2 BS_58YXHGAJ 0.130860477771676 NA NA NA no change NA NA NA 6:43275127 6:114067609 ARRIBA other 9 8 medium [INTRACHROMOSOMAL[chr6:70.68Mb]],deletion TTBK1 NA HDAC2-AS2 NA Kinase, Kinase NA NA NA NA -TTBK1--HS3ST5 BS_58YXHGAJ 0.130860477771676 -0.304748547481782 NA NA no change no change NA NA 6:43275127 6:114067609 ARRIBA other 9 8 medium [INTRACHROMOSOMAL[chr6:70.77Mb]],deletion/5'-5' TTBK1 NA HS3ST5 NA Kinase, Kinase NA NA NA NA -TTC17--OR52E6 BS_ZD5HN296 -0.350523714156011 15.9324803377663 NA NA no change differentially expressed NA NA 11:43396818 11:5841990 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr11:37.52Mb]],inversion TTC17 NA OR52E6 NA NA NA NA NA NA -TTC17--TRIM5 BS_ZD5HN296 -0.350523714156011 3.50564475742382 NA NA no change differentially expressed NA NA 11:43396818 11:5841990 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr11:37.42Mb]],inversion TTC17 NA TRIM5 NA NA NA NA NA NA -TTC17--TRIM5 BS_ZD5HN296 -0.350523714156011 3.50564475742382 NA NA no change differentially expressed NA NA 11:43391952 11:5667711 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:37.42Mb]],inversion TTC17 NA TRIM5 NA NA NA NA NA NA -TTC23--ADAMTS17 BS_R7NTZR4C 13.3792172996008 14.6297356965046 NA NA differentially expressed differentially expressed NA NA 15:99156148 15:99997589 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr15:0.72Mb]],duplication TTC23 NA ADAMTS17 NA NA NA NA NA NA -TTYH1--DPRX(11221)/RNU6-698P(5455) BS_685DACMS 1.0131999625396 -0.460183734543786 NA NA no change no change NA NA 19:54426768 19:53648230 ARRIBA frameshift 8 1 medium [],duplication TTYH1 NA DPRX RNU6-698P Oncogene TranscriptionFactor NA NA NA -TUBB3--LINC01115 BS_W1385R8Y 2.40656604102132 10.1824499596475 NA NA differentially expressed differentially expressed NA NA 16:89923458 2:806249 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr16--chr2]],translocation TUBB3 NA LINC01115 NA NA NA NA NA NA -TXNDC5--NRN1(26016)/F13A1(110464) BS_BMMY0H73 4.18074738895486 0.10800479632596 NA 2.89249982666709 differentially expressed no change NA differentially expressed 6:7904574 6:6033621 ARRIBA frameshift 2 1 medium [],deletion TXNDC5 NA NRN1 F13A1 NA NA NA NA NA -UBE2J1--ADGRB3 BS_58YXHGAJ 0.700463269825719 -0.102475222702573 NA NA no change no change NA NA 6:89338205 6:68956024 STARFUSION frameshift 13 2 NA [INTRACHROMOSOMAL[chr6:19.94Mb]] UBE2J1 NA ADGRB3 NA NA NA NA NA NA -UBE2J1--ADGRB3 BS_58YXHGAJ 0.700463269825719 -0.102475222702573 NA NA no change no change NA NA 6:89338205 6:68956024 ARRIBA frameshift 12 2 high [INTRACHROMOSOMAL[chr6:19.94Mb]],inversion UBE2J1 NA ADGRB3 NA NA NA NA NA NA -UBE2L3--MET BS_GWSJ4Z9H 4.21385492837669 9.19437478015907 NA NA differentially expressed differentially expressed NA NA 22:21592956 7:116755355 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr22--chr7]],translocation UBE2L3 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA -UBE2L3--NME9 BS_GWSJ4Z9H 4.21385492837669 0.149362279070611 NA NA differentially expressed no change NA NA 22:21592956 3:138328652 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr22--chr3]],translocation/5'-5' UBE2L3 NA NME9 NA NA NA NA NA NA -UBE3A--TJP1 BS_PXCPK5XS 1.73640528833582 1.46572226707158 NA NA no change no change NA NA 15:25405461 15:29800702 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:4.26Mb]],duplication UBE3A NA TJP1 NA Oncogene NA NA NA NA -UBE3C--BLACE BS_JB43XBCQ 0.430782974009451 55.1648513750614 NA NA no change differentially expressed NA NA 7:157139338 7:155363197 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:1.77Mb]],inversion UBE3C NA BLACE NA NA NA NA NA NA -UBE3C--INSIG1(2771)/BLACE(43979) BS_JB43XBCQ 0.430782974009451 0.689249010009007 NA 55.1648513750614 no change no change NA differentially expressed 7:157139338 7:155313006 ARRIBA frameshift 4 0 medium [],inversion UBE3C NA INSIG1 BLACE NA NA NA NA NA -UBE3C--PTPRN2 BS_68KX6A42 2.09670526505683 -0.456361365247457 NA NA differentially expressed no change NA NA 7:157231327 7:158205273 ARRIBA frameshift 6 6 high [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr7:0.27Mb]],inversion UBE3C NA PTPRN2 NA NA NA NA NA TCGAFusion -UBN2--HDAC9 BS_68KX6A42 0.543151752216973 2.09420891007 NA NA no change differentially expressed NA NA 7:139261741 7:18754942 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr7:120.23Mb]],inversion/3'-3' UBN2 NA HDAC9 NA NA NA NA NA NA -UBXN6--MIR4456(2862)/AC106772.1(63876) BS_W4H1D4Y6 -0.335598832000722 NA NA NA no change NA NA NA 19:4457615 5:538744 ARRIBA frameshift 11 0 medium [],translocation UBXN6 NA MIR4456 AC106772.1 NA NA NA NA NA -UMAD1--LINC01162 BS_68KX6A42 0.731775878109328 NA NA NA no change NA NA NA 7:7801743 7:21011546 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr7:12.87Mb]],inversion/3'-3' UMAD1 NA LINC01162 NA NA NA NA NA NA -UNC45A--MTHFS BS_W4H1D4Y6 0.954747763866723 2.2627912407301 NA NA no change differentially expressed NA NA 15:90936460 15:79845442 ARRIBA frameshift 5 3 high [INTRACHROMOSOMAL[chr15:11.03Mb]],inversion UNC45A NA MTHFS NA NA NA NA NA NA -UNC45A--SCAPER BS_W4H1D4Y6 0.954747763866723 -1.56672507010533 NA NA no change no change NA NA 15:90936460 15:76818910 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr15:14.02Mb]],duplication/5'-5' UNC45A NA SCAPER NA NA NA NA NA NA -UNC45A--ST20-MTHFS BS_W4H1D4Y6 0.954747763866723 1.64221404266286 NA NA no change no change NA NA 15:90936460 15:79845442 ARRIBA frameshift 5 3 high [INTRACHROMOSOMAL[chr15:11.01Mb]],inversion UNC45A NA ST20-MTHFS NA NA NA NA NA NA -UQCR10--TMEM167B BS_2JP7RBMB 0.628704218444909 1.81027778876284 NA NA no change no change NA NA 22:29767548 1:109090885 ARRIBA in-frame 2 1 medium [INTERCHROMOSOMAL[chr22--chr1]],translocation/5'-5' UQCR10 NA TMEM167B NA NA NA NA NA NA -URGCP--AC073176.1(23216)/UNC5B(233713) BS_W4H1D4Y6 -0.661316405252497 NA NA -1.28354834039325 no change NA NA no change 7:43887415 10:70978857 ARRIBA frameshift 4 1 high [],translocation URGCP NA AC073176.1 UNC5B NA NA NA TumorSuppressorGene NA -URGCP--AC073176.1(41869)/UNC5B(215060) BS_W4H1D4Y6 -0.661316405252497 NA NA -1.28354834039325 no change NA NA no change 7:43887415 10:70997510 ARRIBA frameshift 4 1 high [],translocation URGCP NA AC073176.1 UNC5B NA NA NA TumorSuppressorGene NA -URGCP--PCBD1(38342)/AC073176.2(2799) BS_W4H1D4Y6 -0.661316405252497 -1.09826873930631 NA NA no change no change NA NA 7:43887415 10:70927126 ARRIBA frameshift 3 0 high [],translocation URGCP NA PCBD1 AC073176.2 NA NA NA NA NA -URGCP--PCBD1(4975)/AC073176.2(36166) BS_W4H1D4Y6 -0.661316405252497 -1.09826873930631 NA NA no change no change NA NA 7:43887415 10:70893759 ARRIBA other 2 1 high [],translocation URGCP NA PCBD1 AC073176.2 NA NA NA NA NA -URGCP-MRPS24--AC073176.1(23216)/UNC5B(233713) BS_W4H1D4Y6 -1.39255016603236 NA NA -1.28354834039325 no change NA NA no change 7:43887415 10:70978857 ARRIBA frameshift 4 1 high [],translocation URGCP-MRPS24 NA AC073176.1 UNC5B NA NA NA TumorSuppressorGene NA -URGCP-MRPS24--AC073176.1(41869)/UNC5B(215060) BS_W4H1D4Y6 -1.39255016603236 NA NA -1.28354834039325 no change NA NA no change 7:43887415 10:70997510 ARRIBA frameshift 4 1 high [],translocation URGCP-MRPS24 NA AC073176.1 UNC5B NA NA NA TumorSuppressorGene NA -URGCP-MRPS24--PCBD1(38342)/AC073176.2(2799) BS_W4H1D4Y6 -1.39255016603236 -1.09826873930631 NA NA no change no change NA NA 7:43887415 10:70927126 ARRIBA frameshift 3 0 medium [],translocation URGCP-MRPS24 NA PCBD1 AC073176.2 NA NA NA NA NA -UROS--PSAP BS_NGSG2KB6 -0.541546563001072 0.00591136254125253 NA NA no change no change NA NA 10:125798063 10:71817474 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:53.93Mb]],deletion UROS NA PSAP NA NA Oncogene NA NA NA -USP15--ACVRL1 BS_5VPM0F36 1.67304120617937 1.034866933872 NA NA no change no change NA NA 12:62260503 12:51912470 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr12:10.34Mb]],duplication USP15 NA ACVRL1 NA Oncogene Kinase NA NA NA -USP15--ANKRD33(8007)/AC025259.2(894) BS_5VPM0F36 1.67304120617937 0.558143686191082 NA NA no change no change NA NA 12:62261005 12:51899671 ARRIBA other 1 1 medium [],duplication USP15 NA ANKRD33 AC025259.2 Oncogene NA NA NA NA -USP16--AC091946.1 BS_W4H1D4Y6 0.404985870399247 NA NA NA no change NA NA NA 21:29024777 5:21731601 ARRIBA other 4 3 high [INTERCHROMOSOMAL[chr21--chr5]],translocation/5'-5' USP16 NA AC091946.1 NA NA NA NA NA NA -USP16--AP000457.1(122780)/RNU6-113P(12171) BS_W4H1D4Y6 0.404985870399247 NA NA NA no change NA NA NA 21:29024777 21:17419376 ARRIBA other 71 4 high [],inversion USP16 NA AP000457.1 RNU6-113P NA NA NA NA NA -USP22--PTPRJ BS_68KX6A42 -0.198768064982749 2.69198873092009 NA NA no change differentially expressed NA NA 17:21021113 11:48110058 ARRIBA frameshift 7 2 high [INTERCHROMOSOMAL[chr17--chr11]],translocation USP22 NA PTPRJ NA NA TumorSuppressorGene, Oncogene NA NA NA -USP22--PTPRJ BS_68KX6A42 -0.198768064982749 2.69198873092009 NA NA no change differentially expressed NA NA 17:21021113 11:48082141 ARRIBA frameshift 2 2 medium [INTERCHROMOSOMAL[chr17--chr11]],translocation USP22 NA PTPRJ NA NA TumorSuppressorGene, Oncogene NA NA NA -USP34--CCT4 BS_HWGWYCY7 -0.408290909252759 1.57160571242529 NA NA no change no change NA NA 2:61370321 2:61883548 ARRIBA in-frame 1 0 low [FA_CancerSupp,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr2:0.40Mb]],duplication USP34 NA CCT4 NA NA NA NA NA TCGAFusion -USP46--KIAA1211 BS_68KX6A42 -0.240890887057974 2.56058529495497 NA NA no change differentially expressed NA NA 4:52659115 4:56179284 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr4:3.39Mb]],inversion USP46 NA KIAA1211 NA NA NA NA NA NA -USP46--SCFD2 BS_8ZY4GST0 1.94094704671491 4.43285796389504 NA NA no change differentially expressed NA NA 4:52659115 4:53116878 ARRIBA frameshift 1 1 low [FA_CancerSupp,INTRACHROMOSOMAL[chr4:0.21Mb]],inversion/5'-5' USP46 NA SCFD2 NA NA NA NA NA NA -USP46--SCFD2 BS_8ZY4GST0 1.94094704671491 4.43285796389504 NA NA no change differentially expressed NA NA 4:52601857 4:52920870 ARRIBA frameshift 2 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr4:0.21Mb]],duplication USP46 NA SCFD2 NA NA NA NA NA NA -USP46--SCFD2 BS_8ZY4GST0 1.94094704671491 4.43285796389504 NA NA no change differentially expressed NA NA 4:52626018 4:52885866 ARRIBA in-frame 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr4:0.21Mb]],duplication USP46 NA SCFD2 NA NA NA NA NA NA -USP46--SCFD2 BS_NGSG2KB6 4.68959818568515 4.76792610483625 NA NA differentially expressed differentially expressed NA NA 4:52637500 4:53066458 ARRIBA other 2 1 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr4:0.21Mb]],inversion/5'-5' USP46 NA SCFD2 NA NA NA NA NA NA -USP48--HSPG2 BS_HWGWYCY7 0.156905280477418 2.85035280514085 NA NA no change differentially expressed NA NA 1:21782824 1:21834945 ARRIBA frameshift 2 0 low [CCLE,INTRACHROMOSOMAL[chr1:0.04Mb],LOCAL_REARRANGEMENT:-:[38639]],duplication USP48 NA HSPG2 NA NA Oncogene NA NA TCGAFusion -UVSSA--MAEA BS_X0XXN9BK 1.89503252256911 1.14790116871349 NA NA no change no change NA NA 4:1366431 4:1311979 ARRIBA frameshift 1 0 low [CCLE,GTEx,INTRACHROMOSOMAL[chr4:0.01Mb],LOCAL_REARRANGEMENT:+:[7119]],duplication UVSSA NA MAEA NA NA NA NA NA NA -UVSSA--MAEA BS_X0XXN9BK 1.89503252256911 1.14790116871349 NA NA no change no change NA NA 4:1355245 4:1311979 ARRIBA in-frame 1 0 low [CCLE,GTEx,INTRACHROMOSOMAL[chr4:0.01Mb],LOCAL_REARRANGEMENT:+:[7119]],duplication UVSSA NA MAEA NA NA NA NA NA NA -VAMP2--PIK3R6 BS_FCDAH728 -1.26769162924545 0.0809639927992259 NA NA no change no change NA NA 17:8161473 17:8804153 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr17:0.64Mb]],duplication VAMP2 NA PIK3R6 NA NA NA NA NA NA -VAPA--RAB31 BS_BMMY0H73 1.45819035222552 2.25845751531617 NA NA no change differentially expressed NA NA 18:9950568 18:9775278 ARRIBA in-frame 1 0 low [Klijn_CellLines,CCLE,GTEx,INTRACHROMOSOMAL[chr18:0.05Mb],LOCAL_REARRANGEMENT:+:[51451]],duplication VAPA NA RAB31 NA NA NA NA NA TCGAFusion -VAPA--RAB31 BS_BMMY0H73 1.45819035222552 2.25845751531617 NA NA no change differentially expressed NA NA 18:9914335 18:9845582 ARRIBA frameshift 1 0 low [Klijn_CellLines,CCLE,GTEx,INTRACHROMOSOMAL[chr18:0.05Mb],LOCAL_REARRANGEMENT:+:[51451]],duplication VAPA NA RAB31 NA NA NA NA NA TCGAFusion -VIPR2--VIPR2(31014)/PIP5K1P2(55464) BS_S6Q7NKA3 0.637504199678337 0.637504199678337 NA 1.95810122888261 no change no change NA no change 7:159142446 7:159175971 ARRIBA frameshift 18 5 high [],inversion VIPR2 NA VIPR2 PIP5K1P2 NA NA NA NA NA -VPS39--SPG11 BS_8ZY4GST0 1.03106699721031 1.91176403414425 NA NA no change no change NA NA 15:42208081 15:44570658 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr15:2.35Mb]],duplication VPS39 NA SPG11 NA NA NA NA NA NA -VPS41--DGKB BS_68KX6A42 1.36988989039353 -0.559376118430487 NA NA no change no change NA NA 7:38817817 7:14841450 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:23.75Mb]],deletion VPS41 NA DGKB NA NA Kinase NA NA NA -VPS41--U3(34698)/MGC4859(192111) BS_68KX6A42 1.36988989039353 -0.435515752750537 NA NA no change no change NA NA 7:38909154 7:10257709 ARRIBA frameshift 2 0 medium [],deletion VPS41 NA U3 MGC4859 NA NA NA NA NA -VPS50--TAGLN3 BS_GWSJ4Z9H NA -1.09028551756275 NA NA NA no change NA NA 7:93259632 3:111999247 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr7--chr3]],translocation VPS50 NA TAGLN3 NA NA NA NA NA NA -VPS54--UGP2 BS_QNNX91SM 0.0854051205744371 -1.49067481533944 NA NA no change no change NA NA 2:64018938 2:63856306 ARRIBA other 1 0 low [FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_INVERSION:-:+:[584]],inversion VPS54 NA UGP2 NA NA NA NA NA NA -VPS54--UGP2 BS_QNNX91SM 0.0854051205744371 -1.49067481533944 NA NA no change no change NA NA 2:63912345 2:63883960 ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_INVERSION:-:+:[584]],inversion VPS54 NA UGP2 NA NA NA NA NA NA -VWA3A--C20orf27 BS_QNNX91SM -1.16837100664081 0.425949633633231 NA NA no change no change NA NA 16:22141692 20:3755607 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr16--chr20]],translocation VWA3A NA C20orf27 NA NA NA NA NA NA -WASF2--AHDC1 BS_HWGWYCY7 2.25786270638485 0.611552658880537 NA NA differentially expressed no change NA NA 1:27489986 1:27558883 ARRIBA other 2 0 low [YOSHIHARA_TCGA,ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.04Mb],LOCAL_REARRANGEMENT:-:[43877]],duplication WASF2 NA AHDC1 NA Oncogene TranscriptionFactor NA NA TCGAFusion -WWTR1--LHPP BS_XZM79E42 2.29093447545152 -1.53057729746997 NA NA differentially expressed no change NA NA 3:149656876 10:124613264 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr3--chr10]],translocation WWTR1 NA LHPP NA CosmicCensus NA NA NA NA -XAF1--E2F5 BS_W1385R8Y -0.736062052073621 4.87016059347854 NA NA no change differentially expressed NA NA 17:6755649 8:85202145 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr17--chr8]],translocation XAF1 NA E2F5 NA TumorSuppressorGene, Oncogene TranscriptionFactor NA NA NA -XKR7--AC083841.1 BS_58YXHGAJ 0.285608620252914 NA NA NA no change NA NA NA 20:31968759 8:142763236 ARRIBA frameshift 5 1 high [INTERCHROMOSOMAL[chr20--chr8]],translocation XKR7 NA AC083841.1 NA NA NA NA NA NA -XPO6--AHSP BS_ZD5HN296 -0.45309344557087 4.53256189657759 NA NA no change differentially expressed NA NA 16:28166508 16:31528458 STARFUSION frameshift 37 13 NA [INTRACHROMOSOMAL[chr16:3.32Mb]] XPO6 NA AHSP NA NA NA NA NA NA -XPO6--AHSP BS_ZD5HN296 -0.45309344557087 4.53256189657759 NA NA no change differentially expressed NA NA 16:28166508 16:31528458 ARRIBA frameshift 37 11 high [INTRACHROMOSOMAL[chr16:3.32Mb]],inversion XPO6 NA AHSP NA NA NA NA NA NA -XPOT--AC135584.1 BS_5VPM0F36 1.90185268729812 NA NA NA no change NA NA NA 12:64410095 12:63153988 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr12:1.25Mb]],inversion/3'-3' XPOT NA AC135584.1 NA NA NA NA NA NA -XPR1--ACBD6 BS_RX1YTZ7F 4.7118124626429 1.44374968353668 NA NA differentially expressed no change NA NA 1:180632270 1:180430262 ARRIBA in-frame 1 0 low [GTEx,INTRACHROMOSOMAL[chr1:0.13Mb]],inversion XPR1 NA ACBD6 NA NA NA NA NA NA -XRN2--KIZ BS_ZF6BSFNF 1.51562186621957 3.41786611541372 NA NA no change differentially expressed NA NA 20:21303473 20:21229011 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr20:0.06Mb],LOCAL_REARRANGEMENT:+:[56682]],duplication XRN2 NA KIZ NA NA Oncogene NA NA NA -XRN2--KIZ BS_ZF6BSFNF 1.51562186621957 3.41786611541372 NA NA no change differentially expressed NA NA 20:21303473 20:21205491 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr20:0.06Mb],LOCAL_REARRANGEMENT:+:[56682]],duplication XRN2 NA KIZ NA NA Oncogene NA NA NA -XRN2--MTHFD2P4(151646)/TOMM22P4(46129) BS_R7NTZR4C 1.99772726356105 NA NA NA no change NA NA NA 20:21340852 4:162475553 ARRIBA frameshift 43 28 high [],translocation XRN2 NA MTHFD2P4 TOMM22P4 NA NA NA NA NA -YEATS4--KCNMB4 BS_H97S5SQN 0.817863825720433 -0.129752161435234 NA NA no change no change NA NA 12:69360023 12:70430485 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr12:0.98Mb]],deletion YEATS4 NA KCNMB4 NA NA NA NA NA NA -YEATS4--VPS37B BS_QKT3TJVK 7.63012655661351 9.78160323338369 NA NA differentially expressed differentially expressed NA NA 12:69370975 12:122871061 ARRIBA frameshift 1 2 low [INTRACHROMOSOMAL[chr12:53.47Mb]],inversion YEATS4 NA VPS37B NA NA NA NA NA NA -YEATS4--VPS37B(23885)/ABCB9(622) BS_QKT3TJVK 7.63012655661351 9.78160323338369 NA 0.807280122495039 differentially expressed differentially expressed NA no change 12:69397803 12:122920329 ARRIBA frameshift 4 3 medium [],inversion YEATS4 NA VPS37B ABCB9 NA NA NA NA NA -YPEL1--ZMYND11 BS_21ET39G7 -0.83087018550373 1.00130887266746 NA NA no change no change NA NA 22:21710630 10:179992 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr22--chr10]],translocation YPEL1 NA ZMYND11 NA NA TumorSuppressorGene NA NA NA -YPEL2--AC007780.1 BS_ZF6BSFNF -0.242130933466887 NA NA NA no change NA NA NA 17:59353526 17:68515394 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr17:9.01Mb]],deletion YPEL2 NA AC007780.1 NA NA NA NA NA NA -YPEL2--PRKAR1A BS_ZF6BSFNF -0.242130933466887 0.785133148260572 NA NA no change no change NA NA 17:59353526 17:68515394 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr17:9.11Mb]],deletion YPEL2 NA PRKAR1A NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA -YWHAG--AC073107.1 BS_68KX6A42 -0.151746799376772 NA NA NA no change NA NA NA 7:76358722 7:65649550 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr7:10.56Mb]],deletion YWHAG NA AC073107.1 NA NA NA NA NA NA -YWHAG--AC073107.1 BS_68KX6A42 -0.151746799376772 NA NA NA no change NA NA NA 7:76358722 7:65671239 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:10.56Mb]],deletion YWHAG NA AC073107.1 NA NA NA NA NA NA -YWHAG--INTS4P1 BS_68KX6A42 -0.151746799376772 -1.62864248978017 NA NA no change no change NA NA 7:76358722 7:65219999 ARRIBA frameshift 91 22 high [INTRACHROMOSOMAL[chr7:11.09Mb]],deletion/5'-5' YWHAG NA INTS4P1 NA NA NA NA NA NA -Z98745.1(42488)/GPX6(4667)--CD2AP BS_58YXHGAJ NA 1.03553454918396 3.10590902156706 NA NA no change differentially expressed NA 6:28498629 6:47610375 ARRIBA other 1 2 medium [],duplication Z98745.1 GPX6 CD2AP NA NA NA NA NA NA -ZBED4--LPA BS_JGA9BP3A 4.36516006438851 18.0189696902466 NA NA differentially expressed differentially expressed NA NA 22:49853989 6:160650497 ARRIBA other 1 2 high [INTERCHROMOSOMAL[chr22--chr6]],translocation ZBED4 NA LPA NA TranscriptionFactor NA NA NA NA -ZBED4(5155)/ALG12(4996)--LPA BS_JGA9BP3A 4.36516006438851 18.0189696902466 1.09045919479851 NA differentially expressed differentially expressed no change NA 22:49895233 6:160650497 ARRIBA other 1 2 high [],translocation ZBED4 ALG12 LPA NA TranscriptionFactor NA NA NA NA -ZDHHC11B--RALGAPA2 BS_S6Q7NKA3 -0.957753967685839 6.16637636360407 NA NA no change differentially expressed NA NA 5:766698 20:20412148 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr5--chr20]],translocation ZDHHC11B NA RALGAPA2 NA NA NA NA NA NA -ZDHHC11B--UBL5 BS_S6Q7NKA3 -0.957753967685839 -0.601298936630572 NA NA no change no change NA NA 5:766698 19:9828592 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr5--chr19]],translocation ZDHHC11B NA UBL5 NA NA NA NA NA NA -ZDHHC13--MRGPRX2 BS_1N7MQZGR -0.284319975550067 3.93153140083332 NA NA no change differentially expressed NA NA 11:19143123 11:19060391 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr11:0.06Mb],LOCAL_INVERSION:+:-:[56418]],duplication/5'-5' ZDHHC13 NA MRGPRX2 NA NA NA NA NA NA -ZDHHC20--POLR3KP1(168223)/RPP40P2(22654) BS_4PPHAQXF -0.226105098195632 -0.0294627825494395 NA -0.0587218934912592 no change no change NA no change 13:21381434 13:59240026 ARRIBA frameshift 37 18 high [],inversion ZDHHC20 NA POLR3KP1 RPP40P2 NA NA NA NA NA -ZDHHC5--AC024405.2 BS_NB9XXBW6 -0.281285368975036 NA NA NA no change NA NA NA 11:57693915 11:50320914 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr11:7.31Mb]],duplication ZDHHC5 NA AC024405.2 NA NA NA NA NA NA -ZEB2--ZEB2 BS_H97S5SQN 1.22006588396808 1.22006588396808 NA NA no change no change NA NA 2:144517278 2:144523828 ARRIBA frameshift 13 2 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.16Mb]],duplication ZEB2 NA ZEB2 NA Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA -ZFHX4--AC005832.4 BS_HWGWYCY7 2.16207628954831 NA NA NA differentially expressed NA NA NA 8:76778439 12:4654292 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr8--chr12]],translocation ZFHX4 NA AC005832.4 NA TranscriptionFactor NA NA NA NA -ZFHX4--NDUFA9 BS_HWGWYCY7 2.16207628954831 4.07791125986629 NA NA differentially expressed differentially expressed NA NA 8:76778439 12:4654292 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr8--chr12]],translocation ZFHX4 NA NDUFA9 NA TranscriptionFactor NA NA NA NA -ZFPM2-AS1--OXR1 BS_BYCX6VK1 4.63139220032718 0.375174180332309 NA NA differentially expressed no change NA NA 8:106060381 8:106604782 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr8:0.30Mb]],inversion ZFPM2-AS1 NA OXR1 NA NA NA NA NA NA -ZFYVE19--MAP7D1 BS_ZQ76ZBEX 1.82089812575224 1.49476698543357 NA NA no change no change NA NA 15:40807866 1:36179513 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr15--chr1]],translocation ZFYVE19 NA MAP7D1 NA NA NA NA NA NA -ZFYVE21--NOC4L BS_KBEX4RT2 0.0354724803219195 0.557257425153315 NA NA no change no change NA NA 14:103715979 12:132150981 ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr14--chr12]],translocation ZFYVE21 NA NOC4L NA NA NA NA NA NA -ZKSCAN7--DRG2 BS_R7NTZR4C 2.54342270723598 2.75769531498159 NA NA differentially expressed differentially expressed NA NA 3:44579762 17:18098268 ARRIBA other 5 1 high [INTERCHROMOSOMAL[chr3--chr17]],translocation/3'-3' ZKSCAN7 NA DRG2 NA TranscriptionFactor NA NA NA NA -ZMIZ1--CHST15(51145)/OAT(252551) BS_EZ3147MX 1.98610074174931 1.77277652885798 NA 1.84585696983726 no change no change NA no change 10:79069270 10:124144752 ARRIBA other 414 212 high [],deletion ZMIZ1 NA CHST15 OAT Oncogene NA NA NA NA -ZMYND19--GLIS3 BS_W7MFJZ5A -0.579781392219945 2.74765237366769 NA NA no change differentially expressed NA NA 9:137586967 9:4287562 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:133.23Mb]],inversion/5'-5' ZMYND19 NA GLIS3 NA NA TranscriptionFactor NA NA NA -ZMYND8--AC009720.1 BS_S6Q7NKA3 0.362083440055714 NA NA NA no change NA NA NA 20:47283571 17:50014155 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr20--chr17]],translocation/5'-5' ZMYND8 NA AC009720.1 NA Oncogene NA NA NA NA -ZNF10--ANHX BS_QKT3TJVK 0.97871760290749 23.1948970361641 NA NA no change differentially expressed NA NA 12:133131014 12:133234378 ARRIBA other 7 1 high [INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_INVERSION:+:-:[58847]],inversion ZNF10 NA ANHX NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF10--ANHX BS_QKT3TJVK 0.97871760290749 23.1948970361641 NA NA no change differentially expressed NA NA 12:133143622 12:133234378 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_INVERSION:+:-:[58847]],inversion ZNF10 NA ANHX NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF10--Y_RNA(1965) BS_QKT3TJVK 0.97871760290749 -0.162236315085263 NA NA no change no change NA NA 12:133131014 12:133240514 ARRIBA other 2 1 high [],inversion ZNF10 NA Y_RNA NA TranscriptionFactor NA NA NA NA -ZNF131--PARP8 BS_R7NTZR4C 1.81029986842993 1.21992882195238 NA NA no change no change NA NA 5:43122177 5:50764362 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr5:7.47Mb]],inversion/3'-3' ZNF131 NA PARP8 NA TranscriptionFactor NA NA NA NA -ZNF136--AC011493.1 BS_S6Q7NKA3 4.53982792289252 NA NA NA differentially expressed NA NA NA 19:12163206 19:23505981 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr19:11.30Mb]],inversion ZNF136 NA AC011493.1 NA TranscriptionFactor NA NA NA NA -ZNF136--ZNF675 BS_S6Q7NKA3 4.53982792289252 3.87317389458029 NA NA differentially expressed differentially expressed NA NA 19:12163206 19:23534317 ARRIBA frameshift 3 1 high [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:11.34Mb]],inversion ZNF136 NA ZNF675 NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF136--ZNF675 BS_S6Q7NKA3 4.53982792289252 3.87317389458029 NA NA differentially expressed differentially expressed NA NA 19:12163206 19:23574232 ARRIBA frameshift 2 0 high [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:11.34Mb]],inversion ZNF136 NA ZNF675 NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF136--ZNF675 BS_S6Q7NKA3 4.53982792289252 3.87317389458029 NA NA differentially expressed differentially expressed NA NA 19:12163206 19:23528014 ARRIBA frameshift 2 0 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:11.34Mb]],inversion ZNF136 NA ZNF675 NA TranscriptionFactor TranscriptionFactor NA NA NA -ZNF141--ATM BS_YDEVMD24 0.0553007237215956 1.6405152592164 NA NA no change no change NA NA 4:337986 11:108297287 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr4--chr11]],translocation ZNF141 NA ATM NA TranscriptionFactor Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA -ZNF207--AC090616.2 BS_NGSG2KB6 1.12365049663053 0.252966684194306 NA NA no change no change NA NA 17:32373432 17:32093944 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr17:0.25Mb]],inversion/3'-3' ZNF207 NA AC090616.2 NA TranscriptionFactor NA NA NA NA -ZNF207--AC090616.5 BS_NGSG2KB6 1.12365049663053 NA NA NA no change NA NA NA 17:32373432 17:32093944 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr17:0.26Mb]],inversion ZNF207 NA AC090616.5 NA TranscriptionFactor NA NA NA NA -ZNF207--U91319.1 BS_NGSG2KB6 1.12365049663053 -0.644669060212207 NA NA no change no change NA NA 17:32368003 16:13554646 ARRIBA frameshift 10 11 medium [INTERCHROMOSOMAL[chr17--chr16]],translocation ZNF207 NA U91319.1 NA TranscriptionFactor NA NA NA NA -ZNF207--U91319.1 BS_NGSG2KB6 1.12365049663053 -0.644669060212207 NA NA no change no change NA NA 17:32366757 16:13562707 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr17--chr16]],translocation ZNF207 NA U91319.1 NA TranscriptionFactor NA NA NA NA -ZNF212--SLC29A4 BS_68KX6A42 1.785264824171 -0.410470821937626 NA NA no change no change NA NA 7:149239802 7:5287809 ARRIBA frameshift 3 3 high [INTRACHROMOSOMAL[chr7:143.93Mb]],duplication ZNF212 NA SLC29A4 NA TranscriptionFactor NA NA NA NA -ZNF212--SLC29A4 BS_68KX6A42 1.785264824171 -0.410470821937626 NA NA no change no change NA NA 7:149239802 7:5287806 ARRIBA frameshift 1 3 high [INTRACHROMOSOMAL[chr7:143.93Mb]],duplication ZNF212 NA SLC29A4 NA TranscriptionFactor NA NA NA NA -ZNF212--SLC29A4 BS_68KX6A42 1.785264824171 -0.410470821937626 NA NA no change no change NA NA 7:149240056 7:5287809 ARRIBA other 1 3 high [INTRACHROMOSOMAL[chr7:143.93Mb]],duplication ZNF212 NA SLC29A4 NA TranscriptionFactor NA NA NA NA -ZNF221--CTNNA1 BS_NB9XXBW6 1.78381062767829 1.87530073406479 NA NA no change no change NA NA 19:43951400 5:138932578 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr19--chr5]],translocation ZNF221 NA CTNNA1 NA TranscriptionFactor Oncogene NA NA NA -ZNF3--ST7-OT4 BS_68KX6A42 2.59074382613144 0.0548626115608093 NA NA differentially expressed no change NA NA 7:100065895 7:116970509 ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr7:16.87Mb]],inversion ZNF3 NA ST7-OT4 NA TranscriptionFactor NA NA NA NA -ZNF385D--CNTN3 BS_X0XXN9BK 0.25944144944878 -0.740924522808771 NA NA no change no change NA NA 3:21564574 3:74499785 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:51.89Mb]],duplication ZNF385D NA CNTN3 NA TranscriptionFactor NA NA NA NA -ZNF438--ZEB1 BS_KBEX4RT2 3.47211292163384 8.64766449315561 NA NA differentially expressed differentially expressed NA NA 10:31031833 10:31461037 ARRIBA other 1 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr10:0.29Mb]],inversion ZNF438 NA ZEB1 NA TranscriptionFactor CosmicCensus, TranscriptionFactor NA NA NA -ZNF438--ZEB1 BS_KBEX4RT2 3.47211292163384 8.64766449315561 NA NA differentially expressed differentially expressed NA NA 10:30908933 10:31461037 ARRIBA other 1 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr10:0.29Mb]],inversion ZNF438 NA ZEB1 NA TranscriptionFactor CosmicCensus, TranscriptionFactor NA NA NA -ZNF438--ZEB1 BS_PXCPK5XS 3.25853649166057 7.09021292150484 NA NA differentially expressed differentially expressed NA NA 10:30984369 10:31461037 ARRIBA other 1 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr10:0.29Mb]],inversion ZNF438 NA ZEB1 NA TranscriptionFactor CosmicCensus, TranscriptionFactor NA NA NA -ZNF461--SEZ6L BS_RX1YTZ7F 2.79427660842897 -0.386360385243123 NA NA differentially expressed no change NA NA 19:36657617 22:26359106 ARRIBA other 4 1 medium [INTERCHROMOSOMAL[chr19--chr22]],translocation/5'-5' ZNF461 NA SEZ6L NA TranscriptionFactor NA NA NA NA -ZNF552--MLC1 BS_JGA9BP3A 2.95491329967343 -0.994078381366805 NA NA differentially expressed no change NA NA 19:57813294 22:50064198 STARFUSION frameshift 11 3 NA [INTERCHROMOSOMAL[chr19--chr22]] ZNF552 NA MLC1 NA TranscriptionFactor NA NA NA NA -ZNF552--MLC1 BS_JGA9BP3A 2.95491329967343 -0.994078381366805 NA NA differentially expressed no change NA NA 19:57803907 22:50064198 STARFUSION other 7 3 NA [INTERCHROMOSOMAL[chr19--chr22]] ZNF552 NA MLC1 NA TranscriptionFactor NA NA NA NA -ZNF552--MLC1 BS_JGA9BP3A 2.95491329967343 -0.994078381366805 NA NA differentially expressed no change NA NA 19:57813294 22:50064198 ARRIBA frameshift 9 2 high [INTERCHROMOSOMAL[chr19--chr22]],translocation ZNF552 NA MLC1 NA TranscriptionFactor NA NA NA NA -ZNF564--PRKACA BS_W1385R8Y -0.998746031968493 0.0734950776996731 NA NA no change no change NA NA 19:12551330 19:14102914 ARRIBA in-frame 7 0 high [INTRACHROMOSOMAL[chr19:1.54Mb]],duplication ZNF564 NA PRKACA NA TranscriptionFactor CosmicCensus, Kinase NA NA NA -ZNF568--LINC01343(165797)/AL513479.1(3274) BS_W4H1D4Y6 3.09468992058139 -0.273536901497991 NA NA differentially expressed no change NA NA 19:36996571 1:38380564 ARRIBA frameshift 6 2 medium [],translocation ZNF568 NA LINC01343 AL513479.1 TranscriptionFactor NA NA NA NA -ZNF586--SMTN BS_JGA9BP3A 2.8843980818095 1.40194227388443 NA NA differentially expressed no change NA NA 19:57769878 22:31095303 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr19--chr22]],translocation ZNF586 NA SMTN NA TranscriptionFactor NA NA NA NA -ZNF660--DRG2 BS_R7NTZR4C 2.84227311684089 2.75769531498159 NA NA differentially expressed differentially expressed NA NA 3:44579762 17:18098268 ARRIBA other 5 1 high [INTERCHROMOSOMAL[chr3--chr17]],translocation/3'-3' ZNF660 NA DRG2 NA TranscriptionFactor NA NA NA NA -ZNF704--AC036214.3 BS_X0XXN9BK 2.18845526039285 NA NA NA differentially expressed NA NA NA 8:80821374 8:79919148 STARFUSION other 263 108 NA [INTRACHROMOSOMAL[chr8:0.55Mb]] ZNF704 NA AC036214.3 NA TranscriptionFactor NA NA NA NA -ZNF704--AC036214.3 BS_X0XXN9BK 2.18845526039285 NA NA NA differentially expressed NA NA NA 8:80821374 8:79919148 ARRIBA in-frame 233 81 high [INTRACHROMOSOMAL[chr8:0.55Mb]],deletion ZNF704 NA AC036214.3 NA TranscriptionFactor NA NA NA NA -ZNF704--AC036214.3 BS_X0XXN9BK 2.18845526039285 NA NA NA differentially expressed NA NA NA 8:80873544 8:79919148 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:0.55Mb]],deletion ZNF704 NA AC036214.3 NA TranscriptionFactor NA NA NA NA -ZNF704--AC138646.1(22353)/AC100870.1(183321) BS_HWGWYCY7 -0.649527763405248 NA NA NA no change NA NA NA 8:80821374 8:79336824 ARRIBA frameshift 6 0 high [],deletion ZNF704 NA AC138646.1 AC100870.1 TranscriptionFactor NA NA NA NA -ZNF704--MRPS28 BS_X0XXN9BK 2.18845526039285 0.0817416853747794 NA NA differentially expressed no change NA NA 8:80821374 8:79919148 STARFUSION in-frame 263 108 NA [INTRACHROMOSOMAL[chr8:0.60Mb]] ZNF704 NA MRPS28 NA TranscriptionFactor NA NA NA NA -ZNF704--MRPS28 BS_X0XXN9BK 2.18845526039285 0.0817416853747794 NA NA differentially expressed no change NA NA 8:80821374 8:79919148 ARRIBA in-frame 237 85 high [INTRACHROMOSOMAL[chr8:0.60Mb]],deletion ZNF704 NA MRPS28 NA TranscriptionFactor NA NA NA NA -ZNF704--MRPS28 BS_X0XXN9BK 2.18845526039285 0.0817416853747794 NA NA differentially expressed no change NA NA 8:80873544 8:79919148 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:0.60Mb]],deletion ZNF704 NA MRPS28 NA TranscriptionFactor NA NA NA NA -ZNF721--LINC01182 BS_RX1YTZ7F 2.07605626526593 5.67435988154902 NA NA differentially expressed differentially expressed NA NA 4:497127 4:13829780 ARRIBA other 6 3 high [INTRACHROMOSOMAL[chr4:13.16Mb]],inversion ZNF721 NA LINC01182 NA TranscriptionFactor NA NA NA NA -ZNF721--LINC01182 BS_RX1YTZ7F 2.07605626526593 5.67435988154902 NA NA differentially expressed differentially expressed NA NA 4:499056 4:13829780 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr4:13.16Mb]],inversion ZNF721 NA LINC01182 NA TranscriptionFactor NA NA NA NA -ZNRF2--ZNF735(6746)/ZNF679(1220) BS_68KX6A42 4.9919148544788 120.350411246089 NA 76.4840824518646 differentially expressed differentially expressed NA differentially expressed 7:30284499 7:64227254 ARRIBA other 6 0 low [],inversion ZNRF2 NA ZNF735 ZNF679 NA TranscriptionFactor NA TranscriptionFactor NA -ZNRF3--C8orf33(16022) BS_HWGWYCY7 0.332512514013035 1.27805577860816 NA NA no change no change NA NA 22:28987201 8:145072052 ARRIBA frameshift 9 5 high [],translocation ZNRF3 NA C8orf33 NA CosmicCensus NA NA NA NA -ZNRF3--LINC01821 BS_HWGWYCY7 0.332512514013035 NA NA NA no change NA NA NA 22:28987201 2:194419308 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr22--chr2]],translocation ZNRF3 NA LINC01821 NA CosmicCensus NA NA NA NA -ZSCAN21--ST7 BS_68KX6A42 1.49615690742851 0.693273102897807 NA NA no change no change NA NA 7:100065895 7:116970509 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr7:16.89Mb]],inversion/3'-3' ZSCAN21 NA ST7 NA TranscriptionFactor TumorSuppressorGene NA NA NA -ZSCAN21--ST7-OT4 BS_68KX6A42 1.49615690742851 0.0548626115608093 NA NA no change no change NA NA 7:100065895 7:116970509 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:16.89Mb]],inversion/3'-3' ZSCAN21 NA ST7-OT4 NA TranscriptionFactor NA NA NA NA +LeftBreakpoint RightBreakpoint FusionName Sample Caller Fusion_Type JunctionReadCount SpanningFragCount Confidence annots Gene1A Gene2A Gene1B Gene2B Gene1A_anno Gene1B_anno Gene2A_anno Gene2B_anno Fusion_anno +16:29082041 4:113174416 AC009093.3--ANK2 BS_014EVM2D ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_014EVM2D ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_014EVM2D ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +7:143360040 7:140787584 FAM131B--BRAF BS_014EVM2D ARRIBA in-frame 5 1 high [ChimerPub,Cosmic,ChimerKB,INTRACHROMOSOMAL[chr7:2.43Mb]],deletion FAM131B NA BRAF NA CosmicCensus Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +12:112651827 12:112646223 RPH3A--RPH3A BS_014EVM2D ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.33Mb]],duplication RPH3A NA RPH3A NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_014EVM2D ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_02NZT8CE ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_02NZT8CE ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_02NZT8CE ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +9:22127402 9:22029433 CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_02NZT8CE ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +3:178801793 3:178909706 KCNMB2-AS1--KCNMB2-AS1(49301)/ZMAT3(107517) BS_02NZT8CE ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_02NZT8CE ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_03FT4S8B ARRIBA other 13 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_03FT4S8B ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +22:32276805 22:32268289 AL008723.1--SLC5A4-AS1 BS_03FT4S8B ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]],duplication AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_03FT4S8B ARRIBA other 7 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +5:3531753 5:3566558 LINC01019--LINC01019(30464)/IRX1(29496) BS_03FT4S8B ARRIBA other 2 1 high [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA +10:26193311 10:26173663 MYO3A--MYO3A BS_03FT4S8B ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.28Mb]],duplication/non-canonical_splicing MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_03FT4S8B ARRIBA other 13 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +15:69684442 15:69563116 PCAT29--DRAIC BS_03FT4S8B ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +15:69684442 15:69548354 PCAT29--DRAIC BS_03FT4S8B ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +15:69677640 15:69548354 PCAT29--DRAIC BS_03FT4S8B ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +15:69677640 15:69563116 PCAT29--DRAIC BS_03FT4S8B ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +15:56394834 15:56389318 TEX9--TEX9 BS_03FT4S8B ARRIBA in-frame 20 6 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.20Mb]],duplication/non-canonical_splicing TEX9 NA TEX9 NA NA NA NA NA NA +22:29292169 11:128781958 EWSR1--FLI1 BS_0448A413 ARRIBA in-frame 6 0 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_044XZ8ST ARRIBA other 61 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_044XZ8ST ARRIBA other 61 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_044XZ8ST ARRIBA other 2 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_044XZ8ST ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46485529 20:46504740 AL031686.1--ZNF334 BS_044XZ8ST ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_044XZ8ST ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211103496 1:211107377 AL590132.1--KCNH1 BS_044XZ8ST ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_044XZ8ST ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_044XZ8ST ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_044XZ8ST ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_044XZ8ST ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_044XZ8ST ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_044XZ8ST ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +12:95947437 15:84546277 AMDHD1--UBE2Q2P1 BS_044XZ8ST ARRIBA other 4 0 high [INTERCHROMOSOMAL[chr12--chr15]],translocation AMDHD1 NA UBE2Q2P1 NA NA NA NA NA NA +2:69152264 7:140787584 ANTXR1--BRAF BS_044XZ8ST ARRIBA in-frame 8 2 high [INTERCHROMOSOMAL[chr2--chr7]],translocation ANTXR1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:69193415 7:140850212 ANTXR1--BRAF BS_044XZ8ST ARRIBA in-frame 1 2 medium [INTERCHROMOSOMAL[chr2--chr7]],translocation ANTXR1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:69193415 7:140794467 ANTXR1--BRAF BS_044XZ8ST ARRIBA frameshift 1 2 medium [INTERCHROMOSOMAL[chr2--chr7]],translocation ANTXR1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_044XZ8ST ARRIBA other 3 0 low [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +7:140794308 2:69170248 BRAF--ANTXR1 BS_044XZ8ST ARRIBA in-frame 24 5 high [INTERCHROMOSOMAL[chr7--chr2]],translocation BRAF NA ANTXR1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +7:140794308 2:69170248 BRAF--ANTXR1 BS_044XZ8ST STARFUSION in-frame 26 5 NA [INTERCHROMOSOMAL[chr7--chr2]] BRAF NA ANTXR1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +9:22049228 9:22029433 CDKN2B-AS1--CDKN2B-AS1 BS_044XZ8ST ARRIBA other 5 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.13Mb]],duplication/non-canonical_splicing CDKN2B-AS1 NA CDKN2B-AS1 NA NA NA NA NA NA +10:103076270 10:103049707 CNNM2--CNNM2 BS_044XZ8ST ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.17Mb]],duplication/non-canonical_splicing CNNM2 NA CNNM2 NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_044XZ8ST ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +22:31495983 17:27212658 EIF4ENIF1--AC069061.4(128622)/AC129926.1(25201) BS_044XZ8ST ARRIBA other 2 2 medium [],translocation EIF4ENIF1 NA AC069061.4 AC129926.1 NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_044XZ8ST ARRIBA in-frame 20 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:74492266 1:74439490 FPGT-TNNI3K--FPGT-TNNI3K BS_044XZ8ST ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_044XZ8ST ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_044XZ8ST ARRIBA frameshift 5 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_044XZ8ST ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_044XZ8ST ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_044XZ8ST ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_044XZ8ST ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_044XZ8ST ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211082898 KCNH1--AL590132.1 BS_044XZ8ST ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_044XZ8ST ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211103496 1:211107377 KCNH1--AL590132.1 BS_044XZ8ST ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_044XZ8ST ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_044XZ8ST ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_044XZ8ST ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_044XZ8ST ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_044XZ8ST ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_044XZ8ST ARRIBA other 4 2 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +2:7985467 2:8324684 LINC00298--LINC00299 BS_044XZ8ST ARRIBA other 1 3 high [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00298 NA LINC00299 NA NA NA NA NA NA +2:8287338 2:8392968 LINC00299--LINC00299(9347)/AC011747.2(150624) BS_044XZ8ST ARRIBA other 7 3 high [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA +13:101345301 13:101399165 NALCN--NALCN BS_044XZ8ST ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.36Mb]],duplication/non-canonical_splicing NALCN NA NALCN NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_044XZ8ST ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +9:131192292 9:131124824 NUP214--AIF1L(1672)/NUP214(737) BS_044XZ8ST ARRIBA frameshift 1 0 low [],duplication NUP214 NA AIF1L NUP214 CosmicCensus, Oncogene NA NA CosmicCensus, Oncogene NA +13:19726605 13:19835689 PSPC1--ZMYM5 BS_044XZ8ST ARRIBA frameshift 1 2 high [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_044XZ8ST ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_044XZ8ST ARRIBA other 61 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_044XZ8ST ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_052PZFMK ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_052PZFMK ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:176040847 5:177795327 AC139491.3--AC140125.2(931)/AC140125.1(5877) BS_052PZFMK ARRIBA other 3 0 medium [],inversion AC139491.3 NA AC140125.2 AC140125.1 NA NA NA NA NA +17:37330173 17:37519071 ACACA--SYNRG BS_052PZFMK ARRIBA frameshift 5 1 high [CCLE,INTRACHROMOSOMAL[chr17:0.11Mb]],duplication ACACA NA SYNRG NA NA NA NA NA NA +14:28720865 14:28738844 AL121766.1(47138)/FOXG1-AS1(8218)--FOXG1-AS1 BS_052PZFMK ARRIBA other 2 0 low [],duplication AL121766.1 FOXG1-AS1 FOXG1-AS1 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_052PZFMK ARRIBA other 16 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +21:10464976 21:10454134 BAGE2--BAGE2 BS_052PZFMK ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.10Mb]],duplication/non-canonical_splicing BAGE2 NA BAGE2 NA NA NA NA NA NA +6:22400643 6:22349229 CASC15(32315)/HDGFL1(168850)--CASC15 BS_052PZFMK ARRIBA other 5 1 high [],duplication CASC15 HDGFL1 CASC15 NA NA NA NA NA NA +7:136869418 7:140007091 CHRM2--TBXAS1 BS_052PZFMK ARRIBA other 2 0 high [INTRACHROMOSOMAL[chr7:2.76Mb]],deletion CHRM2 NA TBXAS1 NA NA NA NA NA NA +5:78632264 5:79717519 LHFPL2--CMYA5 BS_052PZFMK ARRIBA other 5 4 high [INTRACHROMOSOMAL[chr5:0.92Mb]],duplication/5'-5' LHFPL2 NA CMYA5 NA NA NA NA NA NA +2:6301743 2:6314946 LINC01105(300468)/AC017053.1(11211)--AC017053.1 BS_052PZFMK ARRIBA other 12 1 high [],duplication LINC01105 AC017053.1 AC017053.1 NA NA NA NA NA NA +16:69566374 16:69447150 NFAT5--CYB5B BS_052PZFMK ARRIBA frameshift 12 2 high [ChimerSeq,CCLE,FA_CancerSupp,INTRACHROMOSOMAL[chr16:0.10Mb],LOCAL_REARRANGEMENT:+:[98828]],duplication NFAT5 NA CYB5B NA Oncogene, TranscriptionFactor NA NA NA NA +16:69568548 16:69447150 NFAT5--CYB5B BS_052PZFMK ARRIBA frameshift 7 3 high [ChimerSeq,CCLE,FA_CancerSupp,INTRACHROMOSOMAL[chr16:0.10Mb],LOCAL_REARRANGEMENT:+:[98828]],duplication NFAT5 NA CYB5B NA Oncogene, TranscriptionFactor NA NA NA NA +16:69566374 16:69447150 NFAT5--CYB5B BS_052PZFMK STARFUSION frameshift 12 3 NA [ChimerSeq,CCLE,FA_CancerSupp,INTRACHROMOSOMAL[chr16:0.10Mb],LOCAL_REARRANGEMENT:+:[98828]] NFAT5 NA CYB5B NA Oncogene, TranscriptionFactor NA NA NA NA +16:69568548 16:69447150 NFAT5--CYB5B BS_052PZFMK STARFUSION frameshift 7 3 NA [ChimerSeq,CCLE,FA_CancerSupp,INTRACHROMOSOMAL[chr16:0.10Mb],LOCAL_REARRANGEMENT:+:[98828]] NFAT5 NA CYB5B NA Oncogene, TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_052PZFMK ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_052PZFMK ARRIBA other 9 1 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +6:157323412 X:103084883 TMEM242--NXF3 BS_052PZFMK ARRIBA in-frame 4 0 high [INTERCHROMOSOMAL[chr6--chrX]],translocation TMEM242 NA NXF3 NA NA NA NA NA NA +6:157323412 X:103117788 TMEM242--NXF3(24663)/RPSAP59(88222) BS_052PZFMK ARRIBA frameshift 3 1 high [],translocation TMEM242 NA NXF3 RPSAP59 NA NA NA NA NA +1:155178598 1:155115298 TRIM46--EFNA3(27760)/Y_RNA(5192) BS_052PZFMK ARRIBA frameshift 9 0 medium [],duplication TRIM46 NA EFNA3 Y_RNA NA NA NA NA NA +7:139231952 2:165295773 UBN2--SCN2A BS_052PZFMK ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr7--chr2]],translocation UBN2 NA SCN2A NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_063ERW0R ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_063ERW0R ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_063ERW0R ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_063ERW0R ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_063ERW0R ARRIBA other 20 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_063ERW0R ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_063ERW0R ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_063ERW0R ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_063ERW0R ARRIBA frameshift 13 2 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_063ERW0R ARRIBA frameshift 21 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_063ERW0R ARRIBA other 9 0 low [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_063ERW0R ARRIBA frameshift 2 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_063ERW0R ARRIBA in-frame 6 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +12:8238302 12:8208859 LINC02449--FAM66C BS_063ERW0R ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:0.02Mb],LOCAL_REARRANGEMENT:+:[19264]],duplication LINC02449 NA FAM66C NA NA NA NA NA NA +12:8235999 12:8215806 LINC02449--FAM66C BS_063ERW0R ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:0.02Mb],LOCAL_REARRANGEMENT:+:[19264]],duplication LINC02449 NA FAM66C NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_063ERW0R ARRIBA other 2 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_063ERW0R ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +17:74671658 17:73840329 RAB37--AC125421.2(4310)/AC137735.1(54420) BS_063ERW0R ARRIBA frameshift 8 0 high [],duplication RAB37 NA AC125421.2 AC137735.1 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_063ERW0R ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:167554683 3:167633532 WDR49--WDR49 BS_063ERW0R ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.18Mb]],duplication/non-canonical_splicing WDR49 NA WDR49 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_06AMMCXR ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_06AMMCXR ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_06AMMCXR ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +2:26940172 2:26933258 DPYSL5--DPYSL5 BS_06AMMCXR ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_06AMMCXR ARRIBA in-frame 9 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_06AMMCXR ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_06AMMCXR ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +19:53103265 19:53122743 ZNF160--ZNF415 BS_06AMMCXR ARRIBA other 6 0 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:-:[4443]],duplication ZNF160 NA ZNF415 NA TranscriptionFactor TranscriptionFactor NA NA NA +19:53103265 19:53109908 ZNF160--ZNF415 BS_06AMMCXR ARRIBA other 3 0 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:-:[4443]],duplication ZNF160 NA ZNF415 NA TranscriptionFactor TranscriptionFactor NA NA NA +19:53103265 19:53122616 ZNF160--ZNF415 BS_06AMMCXR ARRIBA other 1 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:-:[4443]],duplication ZNF160 NA ZNF415 NA TranscriptionFactor TranscriptionFactor NA NA NA +14:75281146 4:38471747 FOS--LINC01258 BS_06XH7EVF ARRIBA frameshift 110 0 medium [INTERCHROMOSOMAL[chr14--chr4]],translocation/5'-5' FOS NA LINC01258 NA Oncogene, TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_07ANYSYQ ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_07ANYSYQ ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90840578 ADGRV1--ADGRV1 BS_07ANYSYQ ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_07ANYSYQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_07ANYSYQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_07ANYSYQ ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211103496 1:211107377 AL590132.1--KCNH1 BS_07ANYSYQ ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:108347365 3:10329125 ATM--ATP2B2 BS_07ANYSYQ ARRIBA frameshift 7 0 high [INTERCHROMOSOMAL[chr11--chr3]],translocation ATM NA ATP2B2 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA +11:63764518 11:65662076 C11orf95--RELA BS_07ANYSYQ ARRIBA in-frame 136 3 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764518 11:65662076 C11orf95--RELA BS_07ANYSYQ STARFUSION in-frame 147 3 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +10:104168744 10:104188410 CFAP43--CFAP43 BS_07ANYSYQ ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.10Mb]],duplication/non-canonical_splicing CFAP43 NA CFAP43 NA NA NA NA NA NA +15:92974950 15:92955423 CHD2--CHD2 BS_07ANYSYQ ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +3:2100639 11:46688260 CNTN4--ARHGAP1 BS_07ANYSYQ ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr3--chr11]],translocation CNTN4 NA ARHGAP1 NA Oncogene NA NA NA NA +3:2099649 11:46688260 CNTN4--ARHGAP1 BS_07ANYSYQ ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr3--chr11]],translocation CNTN4 NA ARHGAP1 NA Oncogene NA NA NA NA +2:164692221 2:164722522 COBLL1--COBLL1 BS_07ANYSYQ ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.19Mb]],duplication/non-canonical_splicing COBLL1 NA COBLL1 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_07ANYSYQ ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_07ANYSYQ STARFUSION other 4 9 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +11:67279900 3:11817337 GRK2--TAMM41 BS_07ANYSYQ ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr11--chr3]],translocation GRK2 NA TAMM41 NA Kinase NA NA NA NA +3:51714129 11:9836479 GRM2--SBF2 BS_07ANYSYQ ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr3--chr11]],translocation GRM2 NA SBF2 NA NA NA NA NA NA +11:72225166 11:120940347 INPPL1--GRIK4 BS_07ANYSYQ ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr11:48.27Mb]],deletion INPPL1 NA GRIK4 NA Oncogene NA NA NA NA +11:72223960 11:120940347 INPPL1--GRIK4 BS_07ANYSYQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:48.27Mb]],deletion INPPL1 NA GRIK4 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_07ANYSYQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_07ANYSYQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_07ANYSYQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211103496 1:211107377 KCNH1--AL590132.1 BS_07ANYSYQ ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_07ANYSYQ ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_07ANYSYQ ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +3:13358222 11:120037233 NUP210--AP001360.2(25075)/TRIM29(74042) BS_07ANYSYQ ARRIBA frameshift 4 0 high [],translocation NUP210 NA AP001360.2 TRIM29 NA NA NA NA NA +3:73602354 3:122264102 PDZRN3--CASR BS_07ANYSYQ ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:48.56Mb]],duplication/5'-5' PDZRN3 NA CASR NA NA NA NA NA NA +3:73602354 3:122297231 PDZRN3--CASR(5602)/HNRNPA1P23(20378) BS_07ANYSYQ ARRIBA frameshift 2 0 medium [],duplication PDZRN3 NA CASR HNRNPA1P23 NA NA NA NA NA +11:88175183 11:100191126 RAB38--CNTN5 BS_07ANYSYQ ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr11:10.85Mb]],inversion RAB38 NA CNTN5 NA NA NA NA NA NA +11:63920173 11:63910457 RCOR2(3329)/NAA40(18786)--MARK2 BS_07ANYSYQ ARRIBA other 6 0 medium [],inversion RCOR2 NAA40 MARK2 NA NA Kinase, Kinase NA NA NA +X:20167589 X:20727039 RPS6KA3--AL807740.1(234690)/AL807742.1(42679) BS_07ANYSYQ ARRIBA frameshift 2 1 high [],duplication RPS6KA3 NA AL807740.1 AL807742.1 Kinase NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_07ANYSYQ ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:11601833 3:44530251 VGLL4--AC099669.2(860)/ZKSCAN7(24942) BS_07ANYSYQ ARRIBA frameshift 4 0 high [],inversion VGLL4 NA AC099669.2 ZKSCAN7 NA NA NA TranscriptionFactor NA +11:9512596 11:11661933 ZNF143--MIR4299(5211)/AC131935.2(63399) BS_07ANYSYQ ARRIBA frameshift 2 0 high [],inversion ZNF143 NA MIR4299 AC131935.2 TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_09R7GDA7 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_09R7GDA7 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_09R7GDA7 ARRIBA other 2 1 low [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +2:201299238 2:201362686 ALS2CR12--ALS2CR12(5288)/TRAK2(14521) BS_09R7GDA7 ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_09R7GDA7 ARRIBA in-frame 16 4 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_09R7GDA7 ARRIBA frameshift 8 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:127242695 7:127243515 GRM8--GRM8 BS_09R7GDA7 ARRIBA frameshift 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +5:112142197 5:111735507 NREP-AS1(124888)/EPB41L4A(244)--NREP BS_09R7GDA7 ARRIBA other 9 3 medium [],deletion NREP-AS1 EPB41L4A NREP NA NA NA NA NA NA +11:132657087 19:14177744 OPCML--ADGRL1 BS_09R7GDA7 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr11--chr19]],translocation OPCML NA ADGRL1 NA TumorSuppressorGene, Oncogene NA NA NA NA +17:6525356 17:6590630 PITPNM3--KIAA0753 BS_09R7GDA7 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_09R7GDA7 ARRIBA in-frame 19 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_09R7GDA7 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:167554683 3:167658326 WDR49--WDR49(4343)/PDCD10(24972) BS_09R7GDA7 ARRIBA frameshift 1 3 high [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +X:12065575 X:12498680 Y_RNA(10649)/FRMPD4(72891)--FRMPD4 BS_09R7GDA7 ARRIBA other 4 2 high [],deletion Y_RNA FRMPD4 FRMPD4 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_09Z7TC35 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_09Z7TC35 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:201307519 2:201364176 ALS2CR12--ALS2CR12(6778)/TRAK2(13031) BS_09Z7TC35 ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA +14:89870643 14:89932627 EFCAB11--EFCAB11 BS_09Z7TC35 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_09Z7TC35 ARRIBA frameshift 56 7 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_09Z7TC35 ARRIBA frameshift 14 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_09Z7TC35 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_09Z7TC35 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:114947320 1:114923449 SYCP1--SYCP1 BS_09Z7TC35 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +12:121712958 7:109854715 TMEM120B--AC073387.2(90358)/EIF3IP1(104503) BS_09Z7TC35 ARRIBA frameshift 7 1 medium [],translocation TMEM120B NA AC073387.2 EIF3IP1 NA NA NA NA NA +8:93820230 8:93786223 TMEM67(996)/AC084346.1(14224)--TMEM67 BS_09Z7TC35 ARRIBA other 2 0 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +17:17955415 17:44794204 TOM1L2--AC005180.2 BS_09Z7TC35 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr17:26.82Mb]],inversion TOM1L2 NA AC005180.2 NA TumorSuppressorGene NA NA NA NA +7:7267442 7:7234303 AC005532.1--C1GALT1 BS_0BXY0F9N ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_0BXY0F9N ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_0BXY0F9N ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_0BXY0F9N ARRIBA other 4 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +15:93634194 15:93557472 AC110023.1--AC091078.1 BS_0BXY0F9N ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_0BXY0F9N ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_0BXY0F9N ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +3:57357176 3:57363786 DNAH12--DNAH12 BS_0BXY0F9N ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +1:15369502 1:15367463 FHAD1--FHAD1 BS_0BXY0F9N ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA +14:60008214 14:59981848 LRRC9--LRRC9 BS_0BXY0F9N ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +12:96909895 12:96518272 NEDD1--CFAP54 BS_0BXY0F9N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +15:75943572 15:76011286 NRG4--NRG4 BS_0BXY0F9N ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +18:62072673 18:62102902 PIGN--PIGN BS_0BXY0F9N ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.28Mb]],duplication/non-canonical_splicing PIGN NA PIGN NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_0BXY0F9N ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_0BXY0F9N ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_0BXY0F9N ARRIBA other 3 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +4:16325965 4:16288884 TAPT1-AS1(5825)/ZEB2P1(34721)--TAPT1-AS1 BS_0BXY0F9N ARRIBA other 2 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:99064939 2:99078813 TSGA10--TSGA10 BS_0BXY0F9N ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.16Mb]],duplication/non-canonical_splicing TSGA10 NA TSGA10 NA NA NA NA NA NA +6:52995860 14:49862675 7SK--RN7SL2 BS_0C7VZC0A STARFUSION other 4 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_0C7VZC0A ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_0C7VZC0A ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_0C7VZC0A ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_0C7VZC0A ARRIBA other 8 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +12:96792499 12:96647875 CFAP54--CFAP54 BS_0C7VZC0A ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.39Mb]],duplication/non-canonical_splicing CFAP54 NA CFAP54 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_0C7VZC0A ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_0C7VZC0A ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +1:120913450 1:120763628 LINC00623--NBPF26 BS_0C7VZC0A ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:0.07Mb],LOCAL_REARRANGEMENT:+:[71794]],duplication LINC00623 NA NBPF26 NA NA NA NA NA NA +1:149607554 1:143974544 LINC00869--FAM72C(2579)/SRGAP2D(543) BS_0C7VZC0A ARRIBA other 2 0 medium [],duplication LINC00869 NA FAM72C SRGAP2D NA NA NA NA NA +6:118813102 6:118856545 MCM9--MCM9 BS_0C7VZC0A ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_0C7VZC0A ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_0C7VZC0A ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_0C7VZC0A ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_0C7VZC0A ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +12:125186866 12:103987050 TMEM132B--TDG BS_0C7VZC0A ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA +12:96917737 12:96547902 NEDD1--CFAP54 BS_0GDJQANN ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_0HW7W7SD ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_0HW7W7SD ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:15591556 9:15563978 CCDC171--CCDC171 BS_0HW7W7SD ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.51Mb]],duplication/non-canonical_splicing CCDC171 NA CCDC171 NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_0HW7W7SD ARRIBA other 4 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_0HW7W7SD ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +X:54248697 X:54259338 WNK3--WNK3 BS_0HW7W7SD ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_0J9SHHSC ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_0J9SHHSC ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_0J9SHHSC ARRIBA other 5 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_0J9SHHSC ARRIBA in-frame 24 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_0J9SHHSC ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_0QYS36NR ARRIBA other 6 1 high [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_0QYS36NR ARRIBA other 6 1 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_0QYS36NR ARRIBA other 3 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_0QYS36NR ARRIBA other 6 1 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:49862562 6:52995792 RN7SL2--7SK BS_0RF0EZTV STARFUSION other 3 7 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_0SCXXM6N ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_0SCXXM6N ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:77421004 15:77056255 HMG20A--TSPAN3 BS_0SCXXM6N ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.34Mb]],inversion HMG20A NA TSPAN3 NA TranscriptionFactor NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_0SCXXM6N ARRIBA in-frame 4 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_0SCXXM6N ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:49533846 5:172931729 DAG1--ERGIC1 BS_0SPCTBZY ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr3--chr5]],translocation DAG1 NA ERGIC1 NA NA NA NA NA NA +18:32092886 18:32068298 RNF138--RNF125 BS_0SPCTBZY ARRIBA frameshift 5 1 high [YOSHIHARA_TCGA,GTEx,ChimerSeq,HGNC_GENEFAM,INTRACHROMOSOMAL[chr18:0.02Mb],LOCAL_REARRANGEMENT:+:[18642]],duplication RNF138 NA RNF125 NA NA NA NA NA TCGAFusion +16:29082041 4:113174416 AC009093.3--ANK2 BS_0T17SY47 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_0T17SY47 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_0T17SY47 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_0T17SY47 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_0T17SY47 ARRIBA frameshift 11 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_0T17SY47 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_0T17SY47 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_0T17SY47 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_0T17SY47 ARRIBA frameshift 6 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_0T17SY47 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_0T17SY47 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_0T17SY47 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_0T17SY47 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_0T17SY47 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_0T17SY47 ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_0T17SY47 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_0T17SY47 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100561397 CAVIN4--TMEFF1 BS_0T17SY47 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +3:2903005 3:2883145 CNTN4--CNTN4 BS_0T17SY47 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA +1:33788600 1:33810864 CSMD2--CSMD2 BS_0T17SY47 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr1:0.65Mb]],duplication/non-canonical_splicing CSMD2 NA CSMD2 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_0T17SY47 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +14:89870643 14:89932627 EFCAB11--EFCAB11 BS_0T17SY47 ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_0T17SY47 ARRIBA in-frame 43 5 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_0T17SY47 STARFUSION other 13 13 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +5:153770415 5:153764434 GRIA1--GRIA1 BS_0T17SY47 ARRIBA in-frame 10 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.32Mb]],duplication/non-canonical_splicing GRIA1 NA GRIA1 NA NA NA NA NA NA +4:6035904 4:6042227 JAKMIP1--JAKMIP1 BS_0T17SY47 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.17Mb]],duplication/non-canonical_splicing JAKMIP1 NA JAKMIP1 NA Oncogene Oncogene NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_0T17SY47 ARRIBA frameshift 11 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_0T17SY47 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_0T17SY47 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_0T17SY47 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_0T17SY47 ARRIBA frameshift 6 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_0T17SY47 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_0T17SY47 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_0T17SY47 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_0T17SY47 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_0T17SY47 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_0T17SY47 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_0T17SY47 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_0T17SY47 ARRIBA frameshift 9 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +14:46920012 14:47035304 MDGA2--MDGA2 BS_0T17SY47 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +11:82099974 11:81252969 MIR4300HG--AP003398.1(295335)/MTND4LP18(299257) BS_0T17SY47 ARRIBA other 3 0 medium [],deletion MIR4300HG NA AP003398.1 MTND4LP18 NA NA NA NA NA +8:17341363 8:17373240 MTMR7--MTMR7 BS_0T17SY47 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_0T17SY47 ARRIBA other 3 1 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_0T17SY47 ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_0T17SY47 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +12:44665484 12:44714741 NELL2--NELL2 BS_0T17SY47 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_0T17SY47 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:240868587 1:240936706 RGS7--RGS7 BS_0T17SY47 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing RGS7 NA RGS7 NA CosmicCensus CosmicCensus NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_0T17SY47 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_0T17SY47 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_0T17SY47 ARRIBA other 6 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_0T17SY47 ARRIBA frameshift 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_0T17SY47 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +13:20827067 13:20868701 XPO4--XPO4 BS_0T17SY47 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.13Mb]],duplication/non-canonical_splicing XPO4 NA XPO4 NA NA NA NA NA NA +2:198191345 2:197572280 AC020719.1--RFTN2 BS_0VRSD9V3 ARRIBA other 15 1 high [INTRACHROMOSOMAL[chr2:0.51Mb]],deletion AC020719.1 NA RFTN2 NA NA NA NA NA NA +2:198191345 2:197572280 AC020719.1--RFTN2 BS_0VRSD9V3 STARFUSION other 18 1 NA [INTRACHROMOSOMAL[chr2:0.51Mb]] AC020719.1 NA RFTN2 NA NA NA NA NA NA +7:136329097 7:136869261 AC078845.1--CHRM2 BS_0VRSD9V3 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:0.43Mb]],deletion AC078845.1 NA CHRM2 NA NA NA NA NA NA +15:34003032 15:71549698 AVEN--AC108861.1 BS_0VRSD9V3 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr15:37.51Mb]],duplication AVEN NA AC108861.1 NA NA NA NA NA NA +15:34003032 15:71764613 AVEN--THSD4 BS_0VRSD9V3 ARRIBA frameshift 17 0 high [INTRACHROMOSOMAL[chr15:37.06Mb]],duplication/5'-5' AVEN NA THSD4 NA NA NA NA NA NA +3:46996081 3:62357291 NBEAL2--PTPRG-AS1 BS_0VRSD9V3 ARRIBA frameshift 7 3 medium [INTRACHROMOSOMAL[chr3:15.25Mb]],deletion/5'-5' NBEAL2 NA PTPRG-AS1 NA NA NA NA NA NA +7:3821583 5:6750331 SDK1--PAPD7 BS_0VRSD9V3 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr7--chr5]],translocation SDK1 NA PAPD7 NA NA NA NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_0WQJP6ZG ARRIBA in-frame 52 8 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_0WQJP6ZG ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_0WQJP6ZG STARFUSION in-frame 55 8 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:68213477 11:67888153 KMT5B--AP003716.1 BS_0WQJP6ZG ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr11:0.25Mb]],inversion KMT5B NA AP003716.1 NA NA NA NA NA NA +11:68213138 11:67888153 KMT5B--AP003716.1 BS_0WQJP6ZG ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr11:0.25Mb]],inversion KMT5B NA AP003716.1 NA NA NA NA NA NA +11:73787992 11:68190152 MRPL48--KMT5B BS_0WQJP6ZG ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr11:5.57Mb]],inversion MRPL48 NA KMT5B NA NA NA NA NA NA +11:73787992 11:68185928 MRPL48--KMT5B BS_0WQJP6ZG ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:5.57Mb]],inversion MRPL48 NA KMT5B NA NA NA NA NA NA +2:183037992 2:186740228 NCKAP1--FAM171B BS_0WQJP6ZG ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr2:3.66Mb]],inversion NCKAP1 NA FAM171B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_0WVJYM9R ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_0WVJYM9R ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:60762796 1:60826585 AC099792.1--AC099792.1 BS_0WVJYM9R ARRIBA other 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication AC099792.1 NA AC099792.1 NA NA NA NA NA NA +14:49586856 6:52995632 AL139099.5--7SK BS_0WVJYM9R STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_0WVJYM9R ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +14:36215058 14:36164120 AL162511.1--LINC00609 BS_0WVJYM9R ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_0WVJYM9R ARRIBA other 8 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_0WVJYM9R ARRIBA other 11 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +7:6187050 7:6489924 CYTH3--KDELR2(5682)/AC072052.1(869) BS_0WVJYM9R ARRIBA frameshift 2 2 high [],duplication CYTH3 NA KDELR2 AC072052.1 NA NA NA NA NA +2:54820462 2:54793289 EML6--EML6 BS_0WVJYM9R ARRIBA frameshift 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.25Mb]],duplication EML6 NA EML6 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_0WVJYM9R ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +7:43463799 7:43456297 HECW1--HECW1 BS_0WVJYM9R ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_0WVJYM9R ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138844317 7:140783157 KIAA1549--BRAF BS_0WVJYM9R ARRIBA in-frame 5 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_0WVJYM9R ARRIBA frameshift 6 0 high [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +2:8201947 2:8245140 LINC00299--LINC00299 BS_0WVJYM9R ARRIBA other 9 1 high [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA +12:25503738 12:25549546 LMNTD1--LMNTD1 BS_0WVJYM9R ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +X:150473802 X:150469745 MAMLD1--MAMLD1 BS_0WVJYM9R ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_0WVJYM9R ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_0WVJYM9R ARRIBA other 10 0 high [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +12:70656704 12:70662605 PTPRR--PTPRR BS_0WVJYM9R ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_0WVJYM9R ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +14:49586857 6:52995634 RN7SL1--7SK BS_0WVJYM9R STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_0WVJYM9R ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_0WVJYM9R ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +15:91293171 15:91251819 SV2B--SV2B BS_0WVJYM9R ARRIBA other 2 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.20Mb]],duplication/non-canonical_splicing SV2B NA SV2B NA NA NA NA NA NA +4:16355785 4:16238771 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_0WVJYM9R ARRIBA other 1 3 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_0WVJYM9R ARRIBA other 5 1 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_0X9EGHY2 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_0X9EGHY2 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:17134261 8:17085236 AC079193.2--MICU3 BS_0X9EGHY2 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr8:0.01Mb],LOCAL_REARRANGEMENT:+:[8537]],duplication AC079193.2 NA MICU3 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_0X9EGHY2 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_0X9EGHY2 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_0X9EGHY2 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_0X9EGHY2 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_0X9EGHY2 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_0X9EGHY2 ARRIBA other 4 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_0X9EGHY2 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_0X9EGHY2 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_0X9EGHY2 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_0X9EGHY2 ARRIBA other 4 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +9:70681506 9:70784279 TRPM3--TRPM3 BS_0X9EGHY2 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_0XEG6SNV ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_0XEG6SNV ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_0XEG6SNV ARRIBA in-frame 25 0 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_0XEG6SNV ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_0XEG6SNV STARFUSION in-frame 25 0 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +9:135818408 9:120778545 CAMSAP1--FBXW2 BS_0XEG6SNV ARRIBA in-frame 8 0 high [INTRACHROMOSOMAL[chr9:15.02Mb]],deletion CAMSAP1 NA FBXW2 NA NA NA NA NA NA +9:134732127 9:135816005 COL5A1--CAMSAP1 BS_0XEG6SNV ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr9:0.96Mb]],inversion COL5A1 NA CAMSAP1 NA NA NA NA NA NA +9:127568820 9:133112152 FAM129B--RALGDS BS_0XEG6SNV ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr9:5.52Mb]],duplication FAM129B NA RALGDS NA NA CosmicCensus, Oncogene NA NA NA +11:65395631 9:89179886 FRMD8--SHC3(1119)/CKS2(131312) BS_0XEG6SNV ARRIBA other 29 1 medium [],translocation FRMD8 NA SHC3 CKS2 Oncogene NA NA Oncogene NA +9:77922161 9:132336515 GNAQ--SETX BS_0XEG6SNV ARRIBA in-frame 4 0 high [INTRACHROMOSOMAL[chr9:54.23Mb]],duplication GNAQ NA SETX NA CosmicCensus, Oncogene NA NA NA NA +9:77922161 9:132331448 GNAQ--SETX BS_0XEG6SNV ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:54.23Mb]],duplication GNAQ NA SETX NA CosmicCensus, Oncogene NA NA NA NA +9:124352343 9:125129215 NEK6--SCAI BS_0XEG6SNV ARRIBA other 7 0 medium [INTRACHROMOSOMAL[chr9:0.59Mb]],inversion NEK6 NA SCAI NA Kinase, Kinase NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_0XEG6SNV ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:125142633 9:71665076 SCAI--RPL35AP21(75143)/TMEM2(18290) BS_0XEG6SNV ARRIBA frameshift 5 0 high [],deletion SCAI NA RPL35AP21 TMEM2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_0Y66ZBWE ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_0Y66ZBWE ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_0Y66ZBWE ARRIBA other 11 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +5:61755944 5:61703866 C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_0Y66ZBWE ARRIBA other 3 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_0Y66ZBWE ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_0Y66ZBWE ARRIBA other 25 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_0Y66ZBWE ARRIBA in-frame 8 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_0Y66ZBWE ARRIBA in-frame 12 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +14:59458857 14:59540746 GPR135--CCDC175 BS_0Y66ZBWE ARRIBA other 2 0 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59565275 GPR135--CCDC175 BS_0Y66ZBWE ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59551436 GPR135--CCDC175 BS_0Y66ZBWE ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59511803 GPR135--CCDC175 BS_0Y66ZBWE ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_0Y66ZBWE ARRIBA frameshift 29 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_0Y66ZBWE ARRIBA in-frame 24 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_0Y66ZBWE ARRIBA frameshift 1 2 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_0Y66ZBWE ARRIBA other 20 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_0Y66ZBWE ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +8:124555742 8:124558832 MTSS1--MTSS1 BS_0Y66ZBWE ARRIBA frameshift 15 4 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_0Y66ZBWE ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_0Y66ZBWE ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_0Y66ZBWE ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_0Y66ZBWE ARRIBA other 9 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_0Y66ZBWE ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +1:65148552 6:160330938 AK4--SLC22A2(53300)/SLC22A3(17330) BS_1021ZGQT ARRIBA frameshift 25 1 high [],translocation AK4 NA SLC22A2 SLC22A3 NA NA NA NA NA +1:65190352 6:160362552 AK4--SLC22A3 BS_1021ZGQT ARRIBA other 14 1 medium [INTERCHROMOSOMAL[chr1--chr6]],translocation/5'-5' AK4 NA SLC22A3 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_1021ZGQT ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +14:88712271 14:88754671 EML5--EML5 BS_1021ZGQT ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.18Mb]],duplication/non-canonical_splicing EML5 NA EML5 NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_1021ZGQT ARRIBA other 2 2 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +X:51894349 16:12916688 MAGED1--SHISA9 BS_1021ZGQT ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chrX--chr16]],translocation MAGED1 NA SHISA9 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_1021ZGQT ARRIBA other 38 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_1021ZGQT ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +11:44764512 11:44107683 TSPAN18--EXT2 BS_10APZRVT ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr11:0.48Mb]],duplication TSPAN18 NA EXT2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +16:68944691 16:57788794 AC009137.1--KIFC3 BS_11WY983P ARRIBA other 10 2 medium [INTRACHROMOSOMAL[chr16:11.06Mb]],inversion/3'-3' AC009137.1 NA KIFC3 NA NA NA NA NA NA +16:69121053 16:69040308 CHTF8--TANGO6 BS_11WY983P ARRIBA in-frame 9 1 high [INTRACHROMOSOMAL[chr16:0.03Mb],LOCAL_INVERSION:-:+:[32830]],inversion CHTF8 NA TANGO6 NA NA NA NA NA NA +16:69121436 16:69040308 CHTF8--TANGO6 BS_11WY983P ARRIBA frameshift 11 0 medium [INTRACHROMOSOMAL[chr16:0.03Mb],LOCAL_INVERSION:-:+:[32830]],inversion CHTF8 NA TANGO6 NA NA NA NA NA NA +16:69132484 16:69040308 CHTF8--TANGO6 BS_11WY983P ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr16:0.03Mb],LOCAL_INVERSION:-:+:[32830]],inversion CHTF8 NA TANGO6 NA NA NA NA NA NA +16:69132089 16:69040308 CHTF8--TANGO6 BS_11WY983P ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr16:0.03Mb],LOCAL_INVERSION:-:+:[32830]],inversion CHTF8 NA TANGO6 NA NA NA NA NA NA +5:1330280 5:87150836 CLPTM1L--AC109492.1(13124)/LINC01949(54572) BS_11WY983P ARRIBA frameshift 7 2 high [],inversion CLPTM1L NA AC109492.1 LINC01949 NA NA NA NA NA +4:105453598 4:105259619 PPA2--TET2 BS_11WY983P ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.09Mb],LOCAL_INVERSION:-:+:[89261]],inversion PPA2 NA TET2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +16:69187746 16:55357848 SNTB2--AC109462.1(4760)/MMP2(31852) BS_11WY983P ARRIBA frameshift 2 0 medium [],duplication SNTB2 NA AC109462.1 MMP2 NA NA NA Oncogene NA +16:68930295 16:57788713 TANGO6--KIFC3 BS_11WY983P ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr16:10.98Mb]],inversion TANGO6 NA KIFC3 NA NA NA NA NA NA +16:68944667 16:57788710 TANGO6--KIFC3 BS_11WY983P ARRIBA other 12 2 medium [INTRACHROMOSOMAL[chr16:10.98Mb]],inversion TANGO6 NA KIFC3 NA NA NA NA NA NA +4:105146979 4:105456745 TET2--PPA2 BS_11WY983P ARRIBA other 1 0 low [CCLE,GTEx,INTRACHROMOSOMAL[chr4:0.09Mb],LOCAL_INVERSION:+:-:[89261]],inversion TET2 NA PPA2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +15:56917065 15:57091789 ZNF280D--TCF12 BS_11WY983P ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_INVERSION:-:+:[52]],inversion ZNF280D NA TCF12 NA TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +15:56917540 15:57091789 ZNF280D--TCF12 BS_11WY983P ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_INVERSION:-:+:[52]],inversion ZNF280D NA TCF12 NA TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_13CGKADW ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_13CGKADW ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_13CGKADW ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_13CGKADW ARRIBA other 7 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +17:7656768 14:49862815 ATP1B2--RN7SL2 BS_13CGKADW STARFUSION other 12 1 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +9:137917431 9:137913180 CACNA1B--CACNA1B BS_13CGKADW ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.25Mb]],duplication/non-canonical_splicing CACNA1B NA CACNA1B NA NA NA NA NA NA +X:36285726 X:36228628 CFAP47--CFAP47 BS_13CGKADW ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_13CGKADW ARRIBA other 19 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_13CGKADW ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_13CGKADW ARRIBA frameshift 11 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_13CGKADW ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +14:59456438 14:59551436 GPR135--CCDC175 BS_13CGKADW ARRIBA other 2 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59543454 GPR135--CCDC175 BS_13CGKADW ARRIBA other 2 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59551436 GPR135--CCDC175 BS_13CGKADW ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59540746 GPR135--CCDC175 BS_13CGKADW ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_13CGKADW ARRIBA frameshift 17 3 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_13CGKADW ARRIBA frameshift 25 5 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_13CGKADW ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +3:178801793 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_13CGKADW ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_13CGKADW ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +7:1898200 7:2149238 MAD1L1--MAD1L1 BS_13CGKADW ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.42Mb]],duplication/non-canonical_splicing MAD1L1 NA MAD1L1 NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_13CGKADW ARRIBA other 4 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_13CGKADW ARRIBA other 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +7:77951712 7:77920279 PHTF2--PHTF2 BS_13CGKADW ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_13CGKADW ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +8:10489818 8:10435170 PRSS51--AC104964.2 BS_13CGKADW ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_INVERSION:-:+:[44566]],duplication/3'-3' PRSS51 NA AC104964.2 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_13CGKADW ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_13CGKADW ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_13CGKADW ARRIBA other 4 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_15ETQ0E4 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_15ETQ0E4 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_15ETQ0E4 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_1607397Q ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +14:105856217 8:127735586 IGH-@--MYC BS_1607397Q STARFUSION other 55 5 NA [INTERCHROMOSOMAL[chr14--chr8]] IGH-@ NA MYC NA Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +14:105856217 8:127735750 IGH-@--MYC BS_1607397Q STARFUSION other 44 5 NA [INTERCHROMOSOMAL[chr14--chr8]] IGH-@ NA MYC NA Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +14:105856217 8:127735873 IGH-@--MYC BS_1607397Q STARFUSION other 9 5 NA [INTERCHROMOSOMAL[chr14--chr8]] IGH-@ NA MYC NA Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +14:105863198 8:127733959 IGH@--CASC11 BS_1607397Q STARFUSION other 81 3 NA [CCLE,INTERCHROMOSOMAL[chr14--chr8]] IGH@ NA CASC11 NA Oncogene NA NA NA NA +14:105863814 8:127733959 IGH@--CASC11 BS_1607397Q STARFUSION other 14 3 NA [CCLE,INTERCHROMOSOMAL[chr14--chr8]] IGH@ NA CASC11 NA Oncogene NA NA NA NA +14:105863198 8:127733959 IGHJ3P--CASC11 BS_1607397Q STARFUSION other 33 1 NA [INTERCHROMOSOMAL[chr14--chr8]] IGHJ3P NA CASC11 NA NA NA NA NA NA +14:105863814 8:127733959 IGHJ5--CASC11 BS_1607397Q ARRIBA other 11 0 high [INTERCHROMOSOMAL[chr14--chr8]],translocation IGHJ5 NA CASC11 NA NA NA NA NA NA +14:105863814 8:127733959 IGHJ5--CASC11 BS_1607397Q STARFUSION other 14 0 NA [INTERCHROMOSOMAL[chr14--chr8]] IGHJ5 NA CASC11 NA NA NA NA NA NA +14:105863198 8:127733959 IGHJ6--CASC11 BS_1607397Q ARRIBA other 61 2 medium [INTERCHROMOSOMAL[chr14--chr8]],translocation IGHJ6 NA CASC11 NA NA NA NA NA NA +14:105863198 8:127733959 IGHJ6--CASC11 BS_1607397Q STARFUSION other 81 3 NA [INTERCHROMOSOMAL[chr14--chr8]] IGHJ6 NA CASC11 NA NA NA NA NA NA +14:105861314 8:127733959 MIR4537(1761)/IGHJ6(1884)--CASC11 BS_1607397Q ARRIBA other 124 5 high [],translocation MIR4537 IGHJ6 CASC11 NA NA NA NA NA NA +8:127735586 14:105856217 MYC--IGHM BS_1607397Q ARRIBA other 54 5 medium [INTERCHROMOSOMAL[chr8--chr14]],translocation/3'-3' MYC NA IGHM NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +8:127735574 14:105859642 MYC--MIR4537 BS_1607397Q ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr8--chr14]],translocation/3'-3' MYC NA MIR4537 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +8:127735574 14:105859642 MYC--MIR4537(89)/IGHJ6(3556) BS_1607397Q ARRIBA other 12 2 medium [],translocation MYC NA MIR4537 IGHJ6 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_17WYVEEC ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_17WYVEEC ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_17WYVEEC ARRIBA in-frame 4 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:108399436 12:40908357 NRCAM--CNTN1 BS_17WYVEEC ARRIBA other 1 0 low [HGNC_GENEFAM,INTERCHROMOSOMAL[chr7--chr12]],translocation NRCAM NA CNTN1 NA TumorSuppressorGene, Oncogene NA NA NA NA +17:9023391 17:9378653 NTN1--STX8 BS_17WYVEEC ARRIBA in-frame 1 0 low [GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr17:0.01Mb],LOCAL_INVERSION:+:-:[6471]],inversion NTN1 NA STX8 NA NA NA NA NA TCGAFusion +17:9023391 17:9250645 NTN1--STX8 BS_17WYVEEC ARRIBA in-frame 1 0 low [GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr17:0.01Mb],LOCAL_INVERSION:+:-:[6471]],inversion NTN1 NA STX8 NA NA NA NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_17WYVEEC ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_196BBNEJ ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_196BBNEJ ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93656437 15:93569438 AC110023.1--AC091078.1 BS_196BBNEJ ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_196BBNEJ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_196BBNEJ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_196BBNEJ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_196BBNEJ ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +20:54610523 20:54554933 DOK5--DOK5 BS_196BBNEJ ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_196BBNEJ ARRIBA other 7 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_196BBNEJ ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +10:26193311 10:26173663 MYO3A--MYO3A BS_196BBNEJ ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.28Mb]],duplication/non-canonical_splicing MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA +14:78988141 14:78645120 NRXN3--NRXN3 BS_196BBNEJ ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:1.70Mb]],duplication/non-canonical_splicing NRXN3 NA NRXN3 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_196BBNEJ ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_196BBNEJ ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +11:22838364 11:22674850 AC006299.1--GAS2 BS_1A6MQ9ZA ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr11:0.02Mb],LOCAL_REARRANGEMENT:+:[16325]],duplication AC006299.1 NA GAS2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1A6MQ9ZA ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1A6MQ9ZA ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +12:109242593 17:31258345 ACACB--NF1 BS_1A6MQ9ZA ARRIBA in-frame 5 0 high [INTERCHROMOSOMAL[chr12--chr17]],translocation ACACB NA NF1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +1:33739140 1:33743606 CSMD2--CSMD2 BS_1A6MQ9ZA ARRIBA in-frame 4 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr1:0.65Mb]],duplication/non-canonical_splicing CSMD2 NA CSMD2 NA NA NA NA NA NA +18:48711695 12:65299517 CTIF--MSRB3 BS_1A6MQ9ZA ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr18--chr12]],translocation/5'-5' CTIF NA MSRB3 NA Oncogene NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_1A6MQ9ZA ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +17:31253000 12:109245626 NF1--ACACB BS_1A6MQ9ZA ARRIBA in-frame 8 3 high [INTERCHROMOSOMAL[chr17--chr12]],translocation NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +17:31249119 12:109245626 NF1--ACACB BS_1A6MQ9ZA ARRIBA in-frame 3 1 high [INTERCHROMOSOMAL[chr17--chr12]],translocation NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +19:5258017 14:42362906 PTPRS--AL442163.1 BS_1A6MQ9ZA ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr19--chr14]],translocation PTPRS NA AL442163.1 NA NA NA NA NA NA +19:5258017 14:42362906 PTPRS--AL442163.1 BS_1A6MQ9ZA STARFUSION other 11 0 NA [INTERCHROMOSOMAL[chr19--chr14]] PTPRS NA AL442163.1 NA NA NA NA NA NA +20:42115199 1:152931811 PTPRT--LINC01527 BS_1A6MQ9ZA ARRIBA frameshift 5 1 high [INTERCHROMOSOMAL[chr20--chr1]],translocation PTPRT NA LINC01527 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1A6MQ9ZA ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:199308760 2:200010896 SATB2--MAIP1(2356)/SPATS2L(294985) BS_1A6MQ9ZA ARRIBA frameshift 7 1 high [],duplication SATB2 NA MAIP1 SPATS2L TranscriptionFactor NA NA NA NA +5:173323219 22:40680777 STC2--MCHR1 BS_1A6MQ9ZA ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr5--chr22]],translocation/5'-5' STC2 NA MCHR1 NA NA NA NA NA NA +5:173323219 22:40660965 STC2--MKL1(24263)/GAPDHP37(12519) BS_1A6MQ9ZA ARRIBA frameshift 3 0 high [],translocation STC2 NA MKL1 GAPDHP37 NA Oncogene NA NA NA +7:27829074 7:47234007 TAX1BP1--AC004870.3(154879)/TNS3(41147) BS_1A6MQ9ZA ARRIBA other 6 0 medium [],inversion TAX1BP1 NA AC004870.3 TNS3 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1AYRM596 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1AYRM596 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +12:100740105 12:100733774 ANO4--ANO4 BS_1AYRM596 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing ANO4 NA ANO4 NA NA NA NA NA NA +8:75014912 8:127162656 CRISPLD1--CASC19 BS_1AYRM596 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr8:52.04Mb]],deletion/5'-5' CRISPLD1 NA CASC19 NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_1AYRM596 ARRIBA frameshift 31 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +8:28555971 8:26074788 FZD3--EBF2(29391)/RNA5SP258(62092) BS_1AYRM596 ARRIBA frameshift 10 0 high [],duplication FZD3 NA EBF2 RNA5SP258 NA TranscriptionFactor NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_1AYRM596 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +9:70154148 9:70218485 MAMDC2-AS1--SMC5-AS1 BS_1AYRM596 ARRIBA other 2 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr9:0.02Mb],LOCAL_REARRANGEMENT:-:[18109]],duplication MAMDC2-AS1 NA SMC5-AS1 NA NA NA NA NA NA +8:127794734 8:82916879 PVT1_1--AC105031.2 BS_1AYRM596 ARRIBA other 10 2 high [INTRACHROMOSOMAL[chr8:44.84Mb]],inversion PVT1_1 NA AC105031.2 NA NA NA NA NA NA +8:127794734 8:82863110 PVT1_1--AC105031.2 BS_1AYRM596 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:44.84Mb]],inversion PVT1_1 NA AC105031.2 NA NA NA NA NA NA +8:127794734 8:82916879 PVT1_1--AC105031.2 BS_1AYRM596 STARFUSION other 13 2 NA [INTRACHROMOSOMAL[chr8:44.84Mb]] PVT1_1 NA AC105031.2 NA NA NA NA NA NA +8:127794734 8:82916879 PVT1--AC105031.2 BS_1AYRM596 ARRIBA other 10 2 high [INTRACHROMOSOMAL[chr8:44.84Mb]],inversion PVT1 NA AC105031.2 NA Oncogene NA NA NA NA +8:127855319 8:82916879 PVT1--AC105031.2 BS_1AYRM596 ARRIBA other 2 2 high [INTRACHROMOSOMAL[chr8:44.84Mb]],inversion PVT1 NA AC105031.2 NA Oncogene NA NA NA NA +8:127794734 8:82863110 PVT1--AC105031.2 BS_1AYRM596 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:44.84Mb]],inversion PVT1 NA AC105031.2 NA Oncogene NA NA NA NA +8:127794734 8:82916879 PVT1--AC105031.2 BS_1AYRM596 STARFUSION other 13 2 NA [INTRACHROMOSOMAL[chr8:44.84Mb]] PVT1 NA AC105031.2 NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1AYRM596 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:81839612 8:28448954 SNX16--AC025871.1 BS_1AYRM596 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr8:53.34Mb]],inversion SNX16 NA AC025871.1 NA NA NA NA NA NA +8:81839612 8:28455624 SNX16--AC025871.1 BS_1AYRM596 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:53.34Mb]],inversion SNX16 NA AC025871.1 NA NA NA NA NA NA +1:114947320 1:114923449 SYCP1--SYCP1 BS_1AYRM596 ARRIBA frameshift 16 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +8:80514008 8:138821411 ZBTB10--COL22A1 BS_1AYRM596 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr8:58.06Mb]],inversion ZBTB10 NA COL22A1 NA TranscriptionFactor NA NA NA NA +3:148911257 3:148508380 AC092979.1--LINC02046(108424)/RPL38P1(187614) BS_1BWP5MCT ARRIBA other 3 0 high [],deletion AC092979.1 NA LINC02046 RPL38P1 NA NA NA NA NA +3:148911257 3:148446998 AC092979.1--LINC02046(47042)/RPL38P1(248996) BS_1BWP5MCT ARRIBA other 5 0 high [],deletion AC092979.1 NA LINC02046 RPL38P1 NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_1BWP5MCT ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +22:23972219 22:23931955 DDTL--AP000350.2(2381)/AP000350.1(8043) BS_1BWP5MCT ARRIBA other 6 0 low [],inversion DDTL NA AP000350.2 AP000350.1 NA NA NA NA NA +7:133950415 7:133817325 EXOC4--EXOC4 BS_1BWP5MCT ARRIBA other 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],inversion/3'-3' EXOC4 NA EXOC4 NA Oncogene Oncogene NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_1BWP5MCT ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +3:22582105 3:22169035 HMGB1P5(199176)/AC092421.1(88096)--ZNF385D BS_1BWP5MCT ARRIBA other 8 0 high [],deletion HMGB1P5 AC092421.1 ZNF385D NA NA TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1D6PZNKN ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1D6PZNKN ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:159446782 22:17260585 BAZ2B--CECR3 BS_1D6PZNKN ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr2--chr22]],translocation/5'-5' BAZ2B NA CECR3 NA TranscriptionFactor NA NA NA NA +22:17683321 22:44163858 BCL2L13--PARVB BS_1D6PZNKN ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr22:26.27Mb]],deletion BCL2L13 NA PARVB NA NA Oncogene NA NA NA +22:17655832 22:44163858 BCL2L13--PARVB BS_1D6PZNKN ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr22:26.27Mb]],deletion BCL2L13 NA PARVB NA NA Oncogene NA NA NA +22:17683321 22:44163858 BCL2L13--PARVB BS_1D6PZNKN STARFUSION frameshift 11 1 NA [INTRACHROMOSOMAL[chr22:26.27Mb]] BCL2L13 NA PARVB NA NA Oncogene NA NA NA +22:39634724 22:40594735 CACNA1I--MKL1 BS_1D6PZNKN ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr22:0.72Mb]],inversion CACNA1I NA MKL1 NA NA Oncogene NA NA NA +22:38871480 22:43339235 CBX6--SCUBE1 BS_1D6PZNKN ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr22:4.32Mb]],duplication CBX6 NA SCUBE1 NA NA NA NA NA NA +5:173123202 2:45332811 CREBRF--LINC01121(9516)/SRBD1(55869) BS_1D6PZNKN ARRIBA frameshift 10 0 high [],translocation CREBRF NA LINC01121 SRBD1 NA NA NA NA NA +22:20950175 2:157131587 CRKL--RPLP0P7(353215)/CDK7P1(79260) BS_1D6PZNKN ARRIBA other 18 0 medium [],translocation CRKL NA RPLP0P7 CDK7P1 Oncogene NA NA NA NA +19:17315995 19:14647365 DDA1--ADGRE3 BS_1D6PZNKN ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr19:2.62Mb]],inversion DDA1 NA ADGRE3 NA NA NA NA NA NA +8:120009133 2:122879205 DEPTOR--LINC01823(1082503)/AC062020.1(186116) BS_1D6PZNKN ARRIBA frameshift 3 0 high [],translocation DEPTOR NA LINC01823 AC062020.1 NA NA NA NA NA +6:158819317 6:165551156 EZR--PDE10A BS_1D6PZNKN ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr6:6.51Mb]],inversion/5'-5' EZR NA PDE10A NA CosmicCensus NA NA NA NA +13:102401471 1:217259255 FGF14--ESRRG(121500)/GPATCH2(167737) BS_1D6PZNKN ARRIBA frameshift 3 0 high [],translocation FGF14 NA ESRRG GPATCH2 Oncogene Oncogene, TranscriptionFactor NA NA NA +8:38413918 8:38836162 FGFR1--TACC1 BS_1D6PZNKN ARRIBA in-frame 413 56 high [ChimerSeq,ChimerKB,Cosmic,INTRACHROMOSOMAL[chr8:0.26Mb]],inversion FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA +8:38413918 8:38836162 FGFR1--TACC1 BS_1D6PZNKN STARFUSION in-frame 457 113 NA [ChimerSeq,ChimerKB,Cosmic,INTRACHROMOSOMAL[chr8:0.26Mb]] FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA +3:172133546 2:23808316 FNDC3B--ATAD2B BS_1D6PZNKN ARRIBA frameshift 14 1 high [INTERCHROMOSOMAL[chr3--chr2]],translocation/5'-5' FNDC3B NA ATAD2B NA NA NA NA NA NA +3:172251541 3:158203072 FNDC3B--RSRC1 BS_1D6PZNKN ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr3:13.49Mb]],duplication FNDC3B NA RSRC1 NA NA NA NA NA NA +3:172247776 3:158203072 FNDC3B--RSRC1 BS_1D6PZNKN ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr3:13.49Mb]],duplication FNDC3B NA RSRC1 NA NA NA NA NA NA +7:75738801 3:185652168 HIP1--IGF2BP2 BS_1D6PZNKN ARRIBA in-frame 5 0 medium [INTERCHROMOSOMAL[chr7--chr3]],translocation HIP1 NA IGF2BP2 NA CosmicCensus, Oncogene CosmicCensus NA NA NA +5:119499553 5:120286174 HSD17B4--AC008574.1 BS_1D6PZNKN ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr5:0.61Mb]],inversion HSD17B4 NA AC008574.1 NA NA NA NA NA NA +5:119499553 5:120245633 HSD17B4--AC008574.1 BS_1D6PZNKN ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr5:0.61Mb]],inversion HSD17B4 NA AC008574.1 NA NA NA NA NA NA +11:33561735 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_1D6PZNKN ARRIBA frameshift 2 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +19:11129670 6:137142520 LDLR--IL20RA(97340)/IL22RA2(1300) BS_1D6PZNKN ARRIBA frameshift 3 0 high [],translocation LDLR NA IL20RA IL22RA2 NA NA NA NA NA +5:157744198 18:21180128 LSM11--RNU6-120P(59622)/EXOGP1(2375) BS_1D6PZNKN ARRIBA frameshift 7 1 high [],translocation LSM11 NA RNU6-120P EXOGP1 NA NA NA NA NA +X:150471490 X:150462772 MAMLD1--MAMLD1 BS_1D6PZNKN ARRIBA in-frame 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA +22:40636478 22:39619310 MKL1--CACNA1I BS_1D6PZNKN ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr22:0.72Mb]],inversion MKL1 NA CACNA1I NA Oncogene NA NA NA NA +22:40594674 22:39619310 MKL1--CACNA1I BS_1D6PZNKN ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr22:0.72Mb]],inversion MKL1 NA CACNA1I NA Oncogene NA NA NA NA +3:38251471 4:52920870 OXSR1--SCFD2 BS_1D6PZNKN ARRIBA in-frame 19 0 high [INTERCHROMOSOMAL[chr3--chr4]],translocation OXSR1 NA SCFD2 NA Kinase NA NA NA NA +3:38250018 4:52920870 OXSR1--SCFD2 BS_1D6PZNKN ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr3--chr4]],translocation OXSR1 NA SCFD2 NA Kinase NA NA NA NA +3:38251471 4:52920870 OXSR1--SCFD2 BS_1D6PZNKN STARFUSION in-frame 17 0 NA [INTERCHROMOSOMAL[chr3--chr4]] OXSR1 NA SCFD2 NA Kinase NA NA NA NA +6:165661947 6:158820472 PDE10A--EZR-AS1 BS_1D6PZNKN ARRIBA other 52 5 high [INTRACHROMOSOMAL[chr6:6.51Mb]],inversion PDE10A NA EZR-AS1 NA NA NA NA NA NA +6:165576412 6:158820472 PDE10A--EZR-AS1 BS_1D6PZNKN ARRIBA frameshift 16 6 high [INTRACHROMOSOMAL[chr6:6.51Mb]],inversion PDE10A NA EZR-AS1 NA NA NA NA NA NA +6:165661947 6:158820472 PDE10A--EZR-AS1 BS_1D6PZNKN STARFUSION other 58 7 NA [INTRACHROMOSOMAL[chr6:6.51Mb]] PDE10A NA EZR-AS1 NA NA NA NA NA NA +6:165576412 6:158820472 PDE10A--EZR-AS1 BS_1D6PZNKN STARFUSION other 17 7 NA [INTRACHROMOSOMAL[chr6:6.51Mb]] PDE10A NA EZR-AS1 NA NA NA NA NA NA +6:165661947 6:158844173 PDE10A--OSTCP1 BS_1D6PZNKN ARRIBA other 46 2 high [INTRACHROMOSOMAL[chr6:6.47Mb]],inversion/5'-5' PDE10A NA OSTCP1 NA NA NA NA NA NA +4:54229415 4:52874061 PDGFRA--SCFD2 BS_1D6PZNKN ARRIBA other 151 8 high [INTRACHROMOSOMAL[chr4:0.86Mb]],inversion PDGFRA NA SCFD2 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +4:54230606 4:52874061 PDGFRA--SCFD2 BS_1D6PZNKN ARRIBA other 4 9 high [INTRACHROMOSOMAL[chr4:0.86Mb]],inversion PDGFRA NA SCFD2 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +4:54229415 4:52874061 PDGFRA--SCFD2 BS_1D6PZNKN STARFUSION other 156 9 NA [INTRACHROMOSOMAL[chr4:0.86Mb]] PDGFRA NA SCFD2 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +2:158603104 2:155657828 PKP4--RNU6-546P(327301)/LINC01876(353702) BS_1D6PZNKN ARRIBA frameshift 2 1 high [],duplication PKP4 NA RNU6-546P LINC01876 NA NA NA NA NA +19:16125547 6:161930662 RAB8A--PRKN BS_1D6PZNKN ARRIBA frameshift 11 0 high [INTERCHROMOSOMAL[chr19--chr6]],translocation RAB8A NA PRKN NA Oncogene NA NA NA NA +19:16125547 6:161785908 RAB8A--PRKN BS_1D6PZNKN ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr19--chr6]],translocation RAB8A NA PRKN NA Oncogene NA NA NA NA +20:20712375 5:2579433 RALGAPA2--AC092266.1(317410)/LSINCT5(133158) BS_1D6PZNKN ARRIBA frameshift 3 1 high [],translocation RALGAPA2 NA AC092266.1 LSINCT5 NA NA NA NA NA +19:5978061 19:23687090 RANBP3--ZNF675 BS_1D6PZNKN ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr19:17.55Mb]],inversion/5'-5' RANBP3 NA ZNF675 NA NA TranscriptionFactor NA NA NA +22:40967884 2:159670813 RBX1--AC009961.1 BS_1D6PZNKN ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr22--chr2]],translocation RBX1 NA AC009961.1 NA Oncogene NA NA NA NA +22:40967884 2:159670810 RBX1--AC009961.1 BS_1D6PZNKN ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr22--chr2]],translocation RBX1 NA AC009961.1 NA Oncogene NA NA NA NA +18:20984351 5:173034399 ROCK1--ATP6V0E1 BS_1D6PZNKN ARRIBA in-frame 9 1 high [INTERCHROMOSOMAL[chr18--chr5]],translocation ROCK1 NA ATP6V0E1 NA Kinase, Kinase NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1D6PZNKN ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:158123991 3:150941761 RSRC1--CLRN1 BS_1D6PZNKN ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr3:7.13Mb]],inversion RSRC1 NA CLRN1 NA NA NA NA NA NA +3:158203245 3:172247533 RSRC1--FNDC3B BS_1D6PZNKN ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr3:13.49Mb]],deletion RSRC1 NA FNDC3B NA NA NA NA NA NA +3:158203245 3:172384668 RSRC1--FNDC3B BS_1D6PZNKN ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:13.49Mb]],inversion/3'-3' RSRC1 NA FNDC3B NA NA NA NA NA NA +22:43339104 5:119499317 SCUBE1--HSD17B4 BS_1D6PZNKN ARRIBA frameshift 14 0 high [INTERCHROMOSOMAL[chr22--chr5]],translocation SCUBE1 NA HSD17B4 NA NA NA NA NA NA +22:43339104 5:119499317 SCUBE1--HSD17B4 BS_1D6PZNKN STARFUSION frameshift 14 0 NA [INTERCHROMOSOMAL[chr22--chr5]] SCUBE1 NA HSD17B4 NA NA NA NA NA NA +17:77437770 11:61468692 SEPT9--AP003108.2 BS_1D6PZNKN ARRIBA other 2 2 medium [INTERCHROMOSOMAL[chr17--chr11]],translocation SEPT9 NA AP003108.2 NA CosmicCensus, Oncogene NA NA NA NA +6:109093795 6:168532355 SESN1--SMOC2 BS_1D6PZNKN ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr6:59.35Mb]],duplication/5'-5' SESN1 NA SMOC2 NA NA NA NA NA NA +2:179264499 2:156886462 SESTD1--RPLP0P7(108090)/CDK7P1(324385) BS_1D6PZNKN ARRIBA other 2 0 medium [],inversion SESTD1 NA RPLP0P7 CDK7P1 NA NA NA NA NA +2:85846377 2:86221890 ST3GAL5--REEP1 BS_1D6PZNKN ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr2:0.31Mb]],inversion/5'-5' ST3GAL5 NA REEP1 NA NA NA NA NA NA +8:38840267 8:38772644 TACC1--TACC1 BS_1D6PZNKN ARRIBA frameshift 216 33 high [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.12Mb]],inversion/3'-3' TACC1 NA TACC1 NA Oncogene Oncogene NA NA NA +22:38272684 5:129509841 TMEM184B--AC008591.1 BS_1D6PZNKN ARRIBA other 3 0 low [INTERCHROMOSOMAL[chr22--chr5]],translocation TMEM184B NA AC008591.1 NA NA NA NA NA NA +22:38272684 5:129509841 TMEM184B--ADAMTS19 BS_1D6PZNKN ARRIBA other 3 0 low [INTERCHROMOSOMAL[chr22--chr5]],translocation/5'-5' TMEM184B NA ADAMTS19 NA NA NA NA NA NA +2:32702920 2:122823754 TTC27--LINC01823(1027052)/AC062020.1(241567) BS_1D6PZNKN ARRIBA frameshift 3 0 high [],deletion TTC27 NA LINC01823 AC062020.1 NA NA NA NA NA +6:144700243 6:159595204 UTRN--AL078604.2(6035)/SOD2(73853) BS_1D6PZNKN ARRIBA frameshift 4 2 high [],inversion UTRN NA AL078604.2 SOD2 NA NA NA TumorSuppressorGene NA +6:144700243 6:150514875 UTRN--AL451061.1(4575)/PLEKHG1(85008) BS_1D6PZNKN ARRIBA frameshift 66 1 high [],inversion UTRN NA AL451061.1 PLEKHG1 NA NA NA NA NA +6:144700243 6:150494651 UTRN--IYD(88682)/AL451061.1(10160) BS_1D6PZNKN ARRIBA frameshift 4 0 high [],inversion UTRN NA IYD AL451061.1 NA NA NA NA NA +2:70900868 2:70889476 VAX2--LINC01143 BS_1D6PZNKN ARRIBA frameshift 5 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[10631]],duplication VAX2 NA LINC01143 NA TranscriptionFactor NA NA NA NA +2:70900150 6:144421878 Vax2os1_3--UTRN BS_1D6PZNKN ARRIBA other 43 0 high [INTERCHROMOSOMAL[chr2--chr6]],translocation/3'-3' Vax2os1_3 NA UTRN NA NA NA NA NA NA +19:9425437 17:77437543 ZNF266--SEPT9 BS_1D6PZNKN ARRIBA other 18 1 medium [INTERCHROMOSOMAL[chr19--chr17]],translocation ZNF266 NA SEPT9 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA +19:21836036 12:1141620 ZNF43--ERC1 BS_1D6PZNKN ARRIBA in-frame 12 0 high [INTERCHROMOSOMAL[chr19--chr12]],translocation ZNF43 NA ERC1 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA +19:21843145 12:1141620 ZNF43--ERC1 BS_1D6PZNKN ARRIBA other 6 0 high [INTERCHROMOSOMAL[chr19--chr12]],translocation ZNF43 NA ERC1 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA +19:21851905 12:1141620 ZNF43--ERC1 BS_1D6PZNKN ARRIBA in-frame 5 0 medium [INTERCHROMOSOMAL[chr19--chr12]],translocation ZNF43 NA ERC1 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA +19:21836036 12:1141620 ZNF43--ERC1 BS_1D6PZNKN STARFUSION in-frame 13 0 NA [INTERCHROMOSOMAL[chr19--chr12]] ZNF43 NA ERC1 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA +19:13825713 6:135323324 ZSWIM4--AHI1 BS_1D6PZNKN ARRIBA in-frame 8 2 high [INTERCHROMOSOMAL[chr19--chr6]],translocation ZSWIM4 NA AHI1 NA NA Oncogene NA NA NA +5:32121860 5:32143880 AC025178.1--GOLPH3 BS_1EBQ3T20 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[2763]],duplication AC025178.1 NA GOLPH3 NA NA NA NA NA NA +1:180397516 1:108849576 ACBD6--AKNAD1 BS_1EBQ3T20 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:71.41Mb]],deletion ACBD6 NA AKNAD1 NA NA NA NA NA NA +4:36073689 4:36167047 ARAP2--ARAP2 BS_1EBQ3T20 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.30Mb]],duplication/non-canonical_splicing ARAP2 NA ARAP2 NA Oncogene Oncogene NA NA NA +3:11426926 3:11298686 ATG7--ATG7 BS_1EBQ3T20 ARRIBA frameshift 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr3:0.29Mb]],duplication/non-canonical_splicing ATG7 NA ATG7 NA NA NA NA NA NA +2:131751585 2:131684709 C2orf27A--LINC01087(35094)/C2orf27A(37666) BS_1EBQ3T20 ARRIBA other 5 0 high [],duplication C2orf27A NA LINC01087 C2orf27A NA NA NA NA NA +3:126549537 3:126647296 C3orf22--TXNRD3 BS_1EBQ3T20 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr3:0.05Mb],LOCAL_REARRANGEMENT:-:[48087]],duplication C3orf22 NA TXNRD3 NA NA NA NA NA NA +18:23144845 18:23834015 CABLES1--LAMA3 BS_1EBQ3T20 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr18:0.43Mb]],inversion/3'-3' CABLES1 NA LAMA3 NA TumorSuppressorGene NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_1EBQ3T20 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_1EBQ3T20 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_1EBQ3T20 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100561397 CAVIN4--TMEFF1 BS_1EBQ3T20 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:172081 15:27326809 CBWD1--GABRG3 BS_1EBQ3T20 ARRIBA frameshift 8 0 high [INTERCHROMOSOMAL[chr9--chr15]],translocation CBWD1 NA GABRG3 NA NA NA NA NA NA +9:15784694 9:15563978 CCDC171--CCDC171 BS_1EBQ3T20 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.51Mb]],duplication/non-canonical_splicing CCDC171 NA CCDC171 NA NA NA NA NA NA +3:113433565 3:113506605 CFAP44--SPICE1 BS_1EBQ3T20 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA +3:113294687 3:113506605 CFAP44--SPICE1 BS_1EBQ3T20 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA +3:113326445 3:113506605 CFAP44--SPICE1 BS_1EBQ3T20 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA +3:113399906 3:113506605 CFAP44--SPICE1 BS_1EBQ3T20 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA +3:113395750 3:113494142 CFAP44--SPICE1 BS_1EBQ3T20 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA +4:169713295 4:169635913 CLCN3--CLCN3 BS_1EBQ3T20 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr4:0.11Mb]],duplication/non-canonical_splicing CLCN3 NA CLCN3 NA NA NA NA NA NA +14:89931541 14:89954001 EFCAB11--EFCAB11 BS_1EBQ3T20 ARRIBA frameshift 12 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication/non-canonical_splicing EFCAB11 NA EFCAB11 NA NA NA NA NA NA +1:23743578 1:24180854 ELOA--IFNLR1 BS_1EBQ3T20 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.39Mb]],inversion ELOA NA IFNLR1 NA NA NA NA NA NA +1:23743578 1:24169601 ELOA--IFNLR1 BS_1EBQ3T20 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.39Mb]],inversion ELOA NA IFNLR1 NA NA NA NA NA NA +3:134615438 3:134488019 EPHB1--CEP63 BS_1EBQ3T20 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr3:0.02Mb],LOCAL_REARRANGEMENT:+:[22784]],duplication EPHB1 NA CEP63 NA Kinase, Kinase NA NA NA NA +3:134615438 3:134495296 EPHB1--CEP63 BS_1EBQ3T20 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr3:0.02Mb],LOCAL_REARRANGEMENT:+:[22784]],duplication EPHB1 NA CEP63 NA Kinase, Kinase NA NA NA NA +3:134779881 3:134495296 EPHB1--CEP63 BS_1EBQ3T20 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:0.02Mb],LOCAL_REARRANGEMENT:+:[22784]],duplication EPHB1 NA CEP63 NA Kinase, Kinase NA NA NA NA +3:134597984 3:134495296 EPHB1--CEP63 BS_1EBQ3T20 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:0.02Mb],LOCAL_REARRANGEMENT:+:[22784]],duplication EPHB1 NA CEP63 NA Kinase, Kinase NA NA NA NA +14:76310916 14:76154354 ESRRB--GPATCH2L BS_1EBQ3T20 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr14:0.06Mb],LOCAL_REARRANGEMENT:+:[56272]],duplication ESRRB NA GPATCH2L NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA +4:55858447 4:33888950 EXOC1--AC016687.2 BS_1EBQ3T20 ARRIBA frameshift 16 0 high [INTRACHROMOSOMAL[chr4:21.87Mb]],duplication EXOC1 NA AC016687.2 NA NA NA NA NA NA +4:55858447 4:33888950 EXOC1--AC016687.2 BS_1EBQ3T20 STARFUSION other 16 0 NA [INTRACHROMOSOMAL[chr4:21.87Mb]] EXOC1 NA AC016687.2 NA NA NA NA NA NA +4:55859662 4:33876242 EXOC1--AC016687.3 BS_1EBQ3T20 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr4:21.81Mb]],duplication/5'-5' EXOC1 NA AC016687.3 NA NA NA NA NA NA +2:24183645 2:24135119 FAM228A--FAM228B BS_1EBQ3T20 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[5429]],duplication FAM228A NA FAM228B NA NA NA NA NA NA +9:95149923 9:95249369 FANCC--FANCC BS_1EBQ3T20 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.33Mb]],duplication/non-canonical_splicing FANCC NA FANCC NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +1:240211235 1:240123179 FMN2--FMN2 BS_1EBQ3T20 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing FMN2 NA FMN2 NA NA NA NA NA NA +1:108904254 1:180326271 GPSM2--ACBD6 BS_1EBQ3T20 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:71.34Mb]],deletion/5'-5' GPSM2 NA ACBD6 NA NA NA NA NA NA +12:10378132 12:10409010 KLRK1--KLRC4 BS_1EBQ3T20 ARRIBA frameshift 2 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr12:0.02Mb],LOCAL_REARRANGEMENT:-:[15508]],duplication KLRK1 NA KLRC4 NA Oncogene NA NA NA NA +13:23798724 13:23886506 MIPEP--MIPEP BS_1EBQ3T20 ARRIBA in-frame 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr13:0.16Mb]],duplication MIPEP NA MIPEP NA NA NA NA NA NA +5:80679093 5:80656411 MSH3--MSH3 BS_1EBQ3T20 ARRIBA frameshift 30 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.22Mb]],duplication/non-canonical_splicing MSH3 NA MSH3 NA Oncogene Oncogene NA NA NA +2:42723035 2:42570437 MTA3--MTA3 BS_1EBQ3T20 ARRIBA frameshift 3 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.26Mb]],duplication/non-canonical_splicing MTA3 NA MTA3 NA Oncogene Oncogene NA NA NA +4:169576928 4:169612143 NEK1--NEK1 BS_1EBQ3T20 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.22Mb]],duplication/non-canonical_splicing NEK1 NA NEK1 NA Kinase, Kinase Kinase, Kinase NA NA NA +14:77405913 14:77454102 NOXRED1--VIPAS39 BS_1EBQ3T20 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr14:0.00Mb],LOCAL_REARRANGEMENT:-:[3158]],duplication NOXRED1 NA VIPAS39 NA NA NA NA NA NA +8:125182256 1:243270105 NSMCE2--SDCCAG8 BS_1EBQ3T20 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr8--chr1]],translocation NSMCE2 NA SDCCAG8 NA NA Oncogene NA NA NA +14:31850201 14:31562068 NUBPL--NUBPL BS_1EBQ3T20 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.37Mb]],duplication/non-canonical_splicing NUBPL NA NUBPL NA NA NA NA NA NA +12:51189751 5:56011294 POU6F1--FLJ31104(7645)/AC008892.1(47756) BS_1EBQ3T20 ARRIBA other 9 0 medium [],translocation POU6F1 NA FLJ31104 AC008892.1 TranscriptionFactor NA NA NA NA +3:9948469 3:9934420 PRRT3-AS1--CRELD1 BS_1EBQ3T20 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:+:[1991]],duplication PRRT3-AS1 NA CRELD1 NA NA NA NA NA NA +4:53145333 4:53313763 SCFD2--SCFD2 BS_1EBQ3T20 ARRIBA frameshift 33 4 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr4:0.49Mb]],duplication/non-canonical_splicing SCFD2 NA SCFD2 NA NA NA NA NA NA +10:12149961 10:12081472 SEC61A2--DHTKD1 BS_1EBQ3T20 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr10:0.01Mb],LOCAL_REARRANGEMENT:+:[6412]],duplication SEC61A2 NA DHTKD1 NA NA NA NA NA NA +5:116449817 5:116087497 SEMA6A-AS1--COMMD10 BS_1EBQ3T20 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr5:0.03Mb],LOCAL_REARRANGEMENT:+:[34785]],duplication SEMA6A-AS1 NA COMMD10 NA NA NA NA NA NA +8:19391582 8:19601865 SH2D4A--CSGALNACT1 BS_1EBQ3T20 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr8:0.01Mb],LOCAL_INVERSION:+:-:[7943]],duplication/3'-3' SH2D4A NA CSGALNACT1 NA NA NA NA NA NA +8:98437103 8:99013760 STK3--VPS13B BS_1EBQ3T20 ARRIBA other 1 1 medium [CCLE,FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.07Mb],LOCAL_INVERSION:-:+:[70439]],inversion STK3 NA VPS13B NA Kinase NA NA NA NA +9:99975719 9:99915178 STX17(5378)/ERP44(3460)--STX17 BS_1EBQ3T20 ARRIBA other 10 0 high [],duplication STX17 ERP44 STX17 NA NA NA NA NA NA +12:118151093 12:118189940 TAOK3--TAOK3 BS_1EBQ3T20 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.22Mb]],duplication/non-canonical_splicing TAOK3 NA TAOK3 NA Kinase Kinase NA NA NA +2:74093666 2:73985980 TET3--AC073046.1 BS_1EBQ3T20 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[61]],duplication TET3 NA AC073046.1 NA TranscriptionFactor NA NA NA NA +2:74080591 2:73985980 TET3--AC073046.1 BS_1EBQ3T20 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[61]],duplication TET3 NA AC073046.1 NA TranscriptionFactor NA NA NA NA +2:74073639 2:73985980 TET3--AC073046.1 BS_1EBQ3T20 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[61]],duplication TET3 NA AC073046.1 NA TranscriptionFactor NA NA NA NA +18:56638343 18:55587136 TXNL1--TCF4 BS_1EBQ3T20 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr18:0.93Mb]],deletion TXNL1 NA TCF4 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +10:11481770 10:11597717 USP6NL--USP6NL BS_1EBQ3T20 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.16Mb]],duplication/non-canonical_splicing USP6NL NA USP6NL NA NA NA NA NA NA +8:99275254 8:99013760 VPS13B--VPS13B BS_1EBQ3T20 ARRIBA frameshift 60 2 high [SELFIE,INTRACHROMOSOMAL[chr8:0.86Mb]],duplication/non-canonical_splicing VPS13B NA VPS13B NA NA NA NA NA NA +5:83258677 5:80656411 XRCC4--MSH3 BS_1EBQ3T20 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr5:2.20Mb]],duplication XRCC4 NA MSH3 NA NA Oncogene NA NA NA +5:83258677 5:83104910 XRCC4--XRCC4 BS_1EBQ3T20 ARRIBA frameshift 39 5 low [SELFIE,INTRACHROMOSOMAL[chr5:0.28Mb]],duplication/non-canonical_splicing XRCC4 NA XRCC4 NA NA NA NA NA NA +X:75379120 X:75505847 ZDHHC15--ZDHHC15 BS_1EBQ3T20 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.16Mb]],duplication/non-canonical_splicing ZDHHC15 NA ZDHHC15 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1EN5V3XW ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1EN5V3XW ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +21:16815030 21:37159699 AF130359.1--TTC3 BS_1EN5V3XW ARRIBA other 18 2 high [INTRACHROMOSOMAL[chr21:20.26Mb]],inversion AF130359.1 NA TTC3 NA NA NA NA NA NA +21:16755680 21:37159699 AF130359.1--TTC3 BS_1EN5V3XW ARRIBA other 1 3 high [INTRACHROMOSOMAL[chr21:20.26Mb]],inversion AF130359.1 NA TTC3 NA NA NA NA NA NA +21:16815622 21:37159699 AF130359.1--TTC3 BS_1EN5V3XW ARRIBA other 14 0 medium [INTRACHROMOSOMAL[chr21:20.26Mb]],inversion AF130359.1 NA TTC3 NA NA NA NA NA NA +21:16755680 21:37159699 AF130359.1--TTC3 BS_1EN5V3XW STARFUSION other 21 2 NA [INTRACHROMOSOMAL[chr21:20.26Mb]] AF130359.1 NA TTC3 NA NA NA NA NA NA +21:16815622 21:37159699 AF130359.1--TTC3 BS_1EN5V3XW STARFUSION other 14 2 NA [INTRACHROMOSOMAL[chr21:20.26Mb]] AF130359.1 NA TTC3 NA NA NA NA NA NA +6:22400643 6:22349229 CASC15(32315)/HDGFL1(168850)--CASC15 BS_1EN5V3XW ARRIBA other 7 0 high [],duplication CASC15 HDGFL1 CASC15 NA NA NA NA NA NA +21:16737189 21:37159699 RNU1-98P(18032)/AF130359.1(17330)--TTC3 BS_1EN5V3XW ARRIBA other 9 0 medium [],inversion RNU1-98P AF130359.1 TTC3 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1EN5V3XW ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1G3WYEN3 ARRIBA other 59 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1G3WYEN3 ARRIBA other 59 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:77068843 1:77061012 AL035409.1--ST6GALNAC5 BS_1G3WYEN3 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:+:[2209]],duplication AL035409.1 NA ST6GALNAC5 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_1G3WYEN3 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_1G3WYEN3 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_1G3WYEN3 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_1G3WYEN3 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_1G3WYEN3 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +8:112636817 8:112656341 CSMD3--CSMD3 BS_1G3WYEN3 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_1G3WYEN3 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_1G3WYEN3 ARRIBA in-frame 40 7 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_1G3WYEN3 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_1G3WYEN3 STARFUSION other 8 10 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_1G3WYEN3 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_1G3WYEN3 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:127242695 7:127243515 GRM8--GRM8 BS_1G3WYEN3 ARRIBA frameshift 9 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_1G3WYEN3 ARRIBA frameshift 3 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_1G3WYEN3 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_1G3WYEN3 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_1G3WYEN3 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_1G3WYEN3 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_1G3WYEN3 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_1G3WYEN3 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_1G3WYEN3 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_1G3WYEN3 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_1G3WYEN3 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +3:178801793 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_1G3WYEN3 ARRIBA other 4 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178801793 3:178921943 KCNMB2-AS1--KCNMB2-AS1(61538)/ZMAT3(95280) BS_1G3WYEN3 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +1:196373140 1:196479238 KCNT2--KCNT2 BS_1G3WYEN3 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA +5:94439982 5:94484930 KIAA0825--KIAA0825 BS_1G3WYEN3 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.47Mb]],duplication/non-canonical_splicing KIAA0825 NA KIAA0825 NA NA NA NA NA NA +14:46873433 14:47035304 MDGA2--MDGA2 BS_1G3WYEN3 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_1G3WYEN3 ARRIBA other 4 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +17:32605087 17:32755662 MYO1D--MYO1D BS_1G3WYEN3 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.38Mb]],duplication/non-canonical_splicing MYO1D NA MYO1D NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_1G3WYEN3 ARRIBA in-frame 9 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_1G3WYEN3 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_1G3WYEN3 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_1G3WYEN3 ARRIBA in-frame 27 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1G3WYEN3 ARRIBA other 59 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:130288227 6:130313093 SAMD3--SAMD3 BS_1G3WYEN3 ARRIBA other 2 1 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA +2:134713200 2:134869041 TMEM163--CCNT2-AS1 BS_1G3WYEN3 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA +2:134550570 2:134869041 TMEM163--CCNT2-AS1 BS_1G3WYEN3 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA +X:12065575 X:12498680 Y_RNA(10649)/FRMPD4(72891)--FRMPD4 BS_1G3WYEN3 ARRIBA other 2 0 medium [],deletion Y_RNA FRMPD4 FRMPD4 NA NA NA NA NA NA +9:20658826 9:20456786 FOCAD--MLLT3 BS_1HFK0SXV ARRIBA other 1 0 low [CCLE,INTRACHROMOSOMAL[chr9:0.04Mb],LOCAL_INVERSION:+:-:[35766]],inversion FOCAD NA MLLT3 NA NA CosmicCensus, Oncogene NA NA NA +9:20620654 9:20778681 MLLT3--FOCAD BS_1HFK0SXV ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr9:0.04Mb],LOCAL_INVERSION:-:+:[35766]],inversion MLLT3 NA FOCAD NA CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1HQ76V6D ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1HQ76V6D ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +6:167827237 22:31095303 AFDN--SMTN BS_1HQ76V6D ARRIBA in-frame 33 4 high [INTERCHROMOSOMAL[chr6--chr22]],translocation AFDN NA SMTN NA CosmicCensus, Oncogene NA NA NA NA +6:167827932 22:31095303 AFDN--SMTN BS_1HQ76V6D ARRIBA other 1 4 high [INTERCHROMOSOMAL[chr6--chr22]],translocation AFDN NA SMTN NA CosmicCensus, Oncogene NA NA NA NA +6:167827237 22:31095303 AFDN--SMTN BS_1HQ76V6D STARFUSION in-frame 33 7 NA [INTERCHROMOSOMAL[chr6--chr22]] AFDN NA SMTN NA CosmicCensus, Oncogene NA NA NA NA +6:167821913 22:31095303 AL009178.2(23665)/AFDN-AS1(1963)--SMTN BS_1HQ76V6D ARRIBA other 1 1 high [],translocation AL009178.2 AFDN-AS1 SMTN NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_1HQ76V6D ARRIBA other 5 0 low [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +22:41813975 22:43514666 CCDC134--MPPED1(6818)/EFCAB6-AS1(1441) BS_1HQ76V6D ARRIBA frameshift 1 3 medium [],deletion CCDC134 NA MPPED1 EFCAB6-AS1 NA NA NA NA NA +21:8684995 22:25946137 CR381572.2(4061)/CR381572.1(16466)--MYO18B BS_1HQ76V6D ARRIBA other 9 0 high [],translocation CR381572.2 CR381572.1 MYO18B NA NA TumorSuppressorGene NA NA NA +22:29292050 6:143948185 EWSR1--PLAGL1 BS_1HQ76V6D ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +22:29288786 6:143942663 EWSR1--PLAGL1 BS_1HQ76V6D ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +22:29287134 6:143942663 EWSR1--PLAGL1 BS_1HQ76V6D ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +22:29292050 6:143948185 EWSR1--PLAGL1 BS_1HQ76V6D STARFUSION other 12 0 NA [INTERCHROMOSOMAL[chr22--chr6]] EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +22:48489704 6:168017973 FAM19A5--KIF25 BS_1HQ76V6D ARRIBA frameshift 13 1 high [INTERCHROMOSOMAL[chr22--chr6]],translocation FAM19A5 NA KIF25 NA NA NA NA NA NA +22:48576571 6:168017973 FAM19A5--KIF25 BS_1HQ76V6D ARRIBA frameshift 1 2 high [INTERCHROMOSOMAL[chr22--chr6]],translocation FAM19A5 NA KIF25 NA NA NA NA NA NA +22:48489704 6:168017973 FAM19A5--KIF25 BS_1HQ76V6D STARFUSION other 13 1 NA [INTERCHROMOSOMAL[chr22--chr6]] FAM19A5 NA KIF25 NA NA NA NA NA NA +22:19802001 22:29664990 GNB1L--NF2 BS_1HQ76V6D ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr22:9.75Mb]],inversion GNB1L NA NF2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +6:159991323 22:27604640 IGF2R--AL133456.1(31067)/AL121885.2(71919) BS_1HQ76V6D ARRIBA frameshift 35 5 high [],translocation IGF2R NA AL133456.1 AL121885.2 TumorSuppressorGene, Oncogene NA NA NA NA +22:33856740 22:28821972 LARGE1--Z93930.2 BS_1HQ76V6D ARRIBA other 11 0 high [INTRACHROMOSOMAL[chr22:4.31Mb]],inversion LARGE1 NA Z93930.2 NA NA NA NA NA NA +22:33856740 22:28821972 LARGE1--Z93930.2 BS_1HQ76V6D STARFUSION other 11 0 NA [INTRACHROMOSOMAL[chr22:4.31Mb]] LARGE1 NA Z93930.2 NA NA NA NA NA NA +22:33919995 22:28987076 LARGE1--ZNRF3 BS_1HQ76V6D ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr22:4.10Mb]],inversion LARGE1 NA ZNRF3 NA NA CosmicCensus NA NA NA +22:33856740 22:28987076 LARGE1--ZNRF3 BS_1HQ76V6D ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr22:4.10Mb]],inversion LARGE1 NA ZNRF3 NA NA CosmicCensus NA NA NA +6:160633753 6:163455279 LPA--QKI BS_1HQ76V6D ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr6:2.75Mb]],inversion LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA +6:160635123 6:163455279 LPA--QKI BS_1HQ76V6D ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr6:2.75Mb]],inversion LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA +6:160622663 6:163455279 LPA--QKI BS_1HQ76V6D ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr6:2.75Mb]],inversion LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA +2:149486345 2:149449049 LYPD6(12197)/MMADHC(83289)--LYPD6 BS_1HQ76V6D ARRIBA other 1 2 high [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA +22:26004855 19:58400297 MYO18B--LINC02560 BS_1HQ76V6D ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr22--chr19]],translocation MYO18B NA LINC02560 NA TumorSuppressorGene NA NA NA NA +22:29642285 22:37967099 NF2--AL031587.6 BS_1HQ76V6D STARFUSION other 30 5 NA [INTRACHROMOSOMAL[chr22:8.25Mb]] NF2 NA AL031587.6 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:29663656 22:50620841 NF2--MAPK8IP2(6860)/ARSA(1913) BS_1HQ76V6D ARRIBA other 3 1 medium [],deletion NF2 NA MAPK8IP2 ARSA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:29642285 22:37967099 NF2--POLR2F BS_1HQ76V6D ARRIBA frameshift 30 5 high [INTRACHROMOSOMAL[chr22:8.25Mb]],deletion NF2 NA POLR2F NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:29642285 22:37967099 NF2--POLR2F BS_1HQ76V6D STARFUSION frameshift 30 7 NA [INTRACHROMOSOMAL[chr22:8.25Mb]] NF2 NA POLR2F NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:37959476 6:169977881 POLR2F--AL049612.1(167779)/AL596442.1(184636) BS_1HQ76V6D ARRIBA frameshift 3 1 high [],translocation POLR2F NA AL049612.1 AL596442.1 NA NA NA NA NA +19:55233812 22:23617362 PPP6R1--DRICH1 BS_1HQ76V6D ARRIBA other 4 4 medium [INTERCHROMOSOMAL[chr19--chr22]],translocation/5'-5' PPP6R1 NA DRICH1 NA NA NA NA NA NA +22:31716036 22:33121252 PRR14L--LINC01640(4958)/Z82198.3(15888) BS_1HQ76V6D ARRIBA frameshift 5 1 medium [],inversion PRR14L NA LINC01640 Z82198.3 NA NA NA NA NA +6:163535125 6:160650497 QKI--LPA BS_1HQ76V6D ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:2.75Mb]],inversion QKI NA LPA NA TumorSuppressorGene, CosmicCensus NA NA NA NA +22:36028240 22:22900976 RBFOX2--IGL-@ BS_1HQ76V6D STARFUSION other 7 0 NA [INTRACHROMOSOMAL[chr22:12.82Mb]] RBFOX2 NA IGL-@ NA NA Oncogene NA NA NA +22:36028240 22:22900976 RBFOX2--IGL@ BS_1HQ76V6D STARFUSION other 7 0 NA [INTRACHROMOSOMAL[chr22:12.82Mb]] RBFOX2 NA IGL@ NA NA Oncogene NA NA NA +22:36028240 22:22900976 RBFOX2--IGLC2 BS_1HQ76V6D ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr22:12.84Mb]],inversion RBFOX2 NA IGLC2 NA NA NA NA NA NA +22:36028240 22:22900976 RBFOX2--IGLC2 BS_1HQ76V6D STARFUSION frameshift 7 0 NA [INTRACHROMOSOMAL[chr22:12.84Mb]] RBFOX2 NA IGLC2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1HQ76V6D ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:157823446 6:144313145 SNX9--AL024474.2 BS_1HQ76V6D ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr6:13.37Mb]],inversion SNX9 NA AL024474.2 NA NA NA NA NA NA +6:157823446 6:144313145 SNX9--UTRN BS_1HQ76V6D ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr6:12.85Mb]],inversion/3'-3' SNX9 NA UTRN NA NA NA NA NA NA +22:41414511 22:41825698 TEF(15185)/AL008582.1(16423)--CCDC134 BS_1HQ76V6D ARRIBA other 7 0 high [],deletion TEF AL008582.1 CCDC134 NA TranscriptionFactor NA NA NA NA +22:38245935 22:37377941 TMEM184B--ELFN2 BS_1HQ76V6D ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr22:0.79Mb]],inversion/5'-5' TMEM184B NA ELFN2 NA NA NA NA NA NA +22:38242634 22:37368339 TMEM184B--ELFN2 BS_1HQ76V6D ARRIBA other 3 2 medium [INTRACHROMOSOMAL[chr22:0.79Mb]],inversion/5'-5' TMEM184B NA ELFN2 NA NA NA NA NA NA +22:38245935 22:37372034 TMEM184B--Z94160.2 BS_1HQ76V6D ARRIBA frameshift 11 2 high [INTRACHROMOSOMAL[chr22:0.85Mb]],inversion TMEM184B NA Z94160.2 NA NA NA NA NA NA +22:38245935 22:37372034 TMEM184B--Z94160.2 BS_1HQ76V6D STARFUSION other 11 2 NA [INTRACHROMOSOMAL[chr22:0.85Mb]] TMEM184B NA Z94160.2 NA NA NA NA NA NA +22:28822179 22:33856802 Z93930.2--LARGE1 BS_1HQ76V6D ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr22:4.31Mb]],inversion Z93930.2 NA LARGE1 NA NA NA NA NA NA +22:28822179 22:33856802 Z93930.2--LARGE1 BS_1HQ76V6D STARFUSION other 8 0 NA [INTRACHROMOSOMAL[chr22:4.31Mb]] Z93930.2 NA LARGE1 NA NA NA NA NA NA +22:49895233 6:160650497 ZBED4(5155)/ALG12(4996)--LPA BS_1HQ76V6D ARRIBA other 3 0 high [],translocation ZBED4 ALG12 LPA NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1J2WQ08M ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1J2WQ08M ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:96341383 11:102114144 MAML2--YAP1 BS_1J2WQ08M ARRIBA in-frame 26 1 high [CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion +11:96341383 11:102114144 MAML2--YAP1 BS_1J2WQ08M STARFUSION in-frame 29 1 NA [CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]] MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_1J2WQ08M ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:102111169 11:96093517 YAP1--MAML2 BS_1J2WQ08M ARRIBA in-frame 37 2 high [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion +11:102111169 11:96093517 YAP1--MAML2 BS_1J2WQ08M STARFUSION in-frame 37 4 NA [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]] YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion +16:29082041 4:113174416 AC009093.3--ANK2 BS_1JDG6JV5 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1JDG6JV5 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_1JDG6JV5 ARRIBA other 6 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +1:58506060 1:58539310 DAB1--OMA1 BS_1JDG6JV5 ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58536741 DAB1--OMA1 BS_1JDG6JV5 ARRIBA other 7 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58253807 1:58539310 DAB1--OMA1 BS_1JDG6JV5 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58534331 DAB1--OMA1 BS_1JDG6JV5 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58527261 1:58534331 DAB1--OMA1 BS_1JDG6JV5 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_1JDG6JV5 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +7:157571440 7:157595315 PTPRN2--PTPRN2 BS_1JDG6JV5 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:1.05Mb]],duplication/non-canonical_splicing PTPRN2 NA PTPRN2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1JDG6JV5 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:167575918 3:167664448 WDR49--WDR49(10465)/PDCD10(18850) BS_1JDG6JV5 ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1KYGSMA7 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1KYGSMA7 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_1KYGSMA7 ARRIBA in-frame 24 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_1KYGSMA7 STARFUSION other 24 6 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +7:127242695 7:127243515 GRM8--GRM8 BS_1KYGSMA7 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_1KYGSMA7 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140781693 KIAA1549--BRAF BS_1KYGSMA7 ARRIBA in-frame 13 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138861139 7:140781693 KIAA1549--BRAF BS_1KYGSMA7 STARFUSION in-frame 13 1 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +4:118114960 4:118053756 NDST3--NDST3 BS_1KYGSMA7 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing NDST3 NA NDST3 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1KYGSMA7 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_1N9XZXGE ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +22:29287134 11:128805366 EWSR1--FLI1 BS_1N9XZXGE ARRIBA in-frame 20 1 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +22:29289085 11:128790940 EWSR1--FLI1 BS_1N9XZXGE ARRIBA frameshift 19 3 medium [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +22:29288786 11:128805366 EWSR1--FLI1 BS_1N9XZXGE ARRIBA frameshift 1 1 medium [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +22:29287134 11:128805366 EWSR1--FLI1 BS_1N9XZXGE STARFUSION in-frame 20 1 NA [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]] EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_1N9XZXGE ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +7:24979886 6:14049266 OSBPL3--AL022396.1(42365)/CD83(67990) BS_1N9XZXGE ARRIBA other 7 3 high [],translocation OSBPL3 NA AL022396.1 CD83 Oncogene NA NA NA NA +7:24979886 6:14103276 OSBPL3--AL022396.1(96375)/CD83(13980) BS_1N9XZXGE ARRIBA other 2 0 medium [],translocation OSBPL3 NA AL022396.1 CD83 Oncogene NA NA NA NA +19:49539179 19:49526010 RCN3--FCGRT BS_1N9XZXGE ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:+:[1285]],duplication RCN3 NA FCGRT NA NA NA NA NA NA +19:49542752 19:49526010 RCN3--FCGRT BS_1N9XZXGE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:+:[1285]],duplication RCN3 NA FCGRT NA NA NA NA NA NA +5:169193479 5:168185198 SLIT3--AC011369.1 BS_1N9XZXGE ARRIBA frameshift 6 5 high [INTRACHROMOSOMAL[chr5:0.47Mb]],deletion SLIT3 NA AC011369.1 NA NA NA NA NA NA +5:169193479 5:168165179 SLIT3--AC011369.1 BS_1N9XZXGE ARRIBA frameshift 6 3 high [INTRACHROMOSOMAL[chr5:0.47Mb]],deletion SLIT3 NA AC011369.1 NA NA NA NA NA NA +5:169193479 5:168088308 SLIT3--AC011369.1 BS_1N9XZXGE ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr5:0.47Mb]],deletion SLIT3 NA AC011369.1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1NPD7PVG ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1NPD7PVG ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:22127402 9:22029433 CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_1NPD7PVG ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_1NPD7PVG ARRIBA in-frame 6 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_1NPD7PVG ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_1NPD7PVG ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +1:149607554 1:143974544 LINC00869--FAM72C(2579)/SRGAP2D(543) BS_1NPD7PVG ARRIBA other 2 0 medium [],duplication LINC00869 NA FAM72C SRGAP2D NA NA NA NA NA +3:183276872 3:183318217 MCF2L2--MCF2L2 BS_1NPD7PVG ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing MCF2L2 NA MCF2L2 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_1NPD7PVG ARRIBA frameshift 2 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19730239 13:19835689 PSPC1--ZMYM5 BS_1NPD7PVG ARRIBA in-frame 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +6:52995911 14:20343380 RN7SK--AL355075.4 BS_1NPD7PVG STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA AL355075.4 NA NA NA NA NA NA +6:52995911 14:20343380 RN7SK--RPPH1 BS_1NPD7PVG STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1NPD7PVG ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1QNTEZPS ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1QNTEZPS ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:33177591 7:33038842 BBS9--NT5C3A BS_1QNTEZPS ARRIBA frameshift 18 2 high [INTRACHROMOSOMAL[chr7:0.07Mb],LOCAL_INVERSION:+:-:[66447]],duplication/5'-5' BBS9 NA NT5C3A NA NA NA NA NA NA +4:118251569 4:118331866 NDST3--PRSS12 BS_1QNTEZPS ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_INVERSION:+:-:[21390]],duplication/3'-3' NDST3 NA PRSS12 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_1QNTEZPS ARRIBA frameshift 3 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19730239 13:19835689 PSPC1--ZMYM5 BS_1QNTEZPS ARRIBA in-frame 2 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19759323 13:19835689 PSPC1--ZMYM5 BS_1QNTEZPS ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1QNTEZPS ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1QXEC43H ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1QXEC43H ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:155503021 7:155509097 AC009403.2--AC009403.2 BS_1QXEC43H ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA +5:91102340 5:90781430 ADGRV1--ADGRV1 BS_1QXEC43H ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_1QXEC43H ARRIBA other 6 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +15:21617244 15:21595606 LINC02203--LINC02203 BS_1QXEC43H ARRIBA other 15 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.10Mb]],duplication/non-canonical_splicing LINC02203 NA LINC02203 NA NA NA NA NA NA +2:149486345 2:149449049 LYPD6(12197)/MMADHC(83289)--LYPD6 BS_1QXEC43H ARRIBA other 3 0 medium [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA +9:96925773 16:57578322 MFSD14C--ADGRG5 BS_1QXEC43H ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr9--chr16]],translocation/5'-5' MFSD14C NA ADGRG5 NA NA NA NA NA NA +19:16121810 19:45311920 RAB8A--CKM BS_1QXEC43H ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr19:29.17Mb]],inversion RAB8A NA CKM NA Oncogene NA NA NA NA +19:16121810 19:45307650 RAB8A--CKM BS_1QXEC43H ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr19:29.17Mb]],inversion RAB8A NA CKM NA Oncogene NA NA NA NA +12:116741094 12:116740345 RNFT2--RNFT2 BS_1QXEC43H ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.12Mb]],duplication/non-canonical_splicing RNFT2 NA RNFT2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1QXEC43H ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_1QXEC43H ARRIBA other 9 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1RT76ANT ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1RT76ANT ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_1RT76ANT ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1RT76ANT ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1RXZ3BP7 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1RXZ3BP7 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:49586758 14:20343380 AL139099.5--RPPH1 BS_1RXZ3BP7 STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +18:62101075 18:62148338 PIGN--PIGN BS_1RXZ3BP7 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.28Mb]],duplication/non-canonical_splicing PIGN NA PIGN NA NA NA NA NA NA +14:49586758 14:20343380 RN7SL1--AL355075.4 BS_1RXZ3BP7 STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1RXZ3BP7 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_1RXZ3BP7 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +14:20343234 14:49586587 AL355075.4--AL139099.5 BS_1SVVER1H STARFUSION other 3 9 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA AL139099.5 NA NA NA NA NA NA +14:20343234 14:49586587 AL355075.4--RN7SL1 BS_1SVVER1H STARFUSION other 3 9 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA RN7SL1 NA NA NA NA NA NA +10:122462124 10:103661114 HTRA1--SH3PXD2A BS_1SVVER1H ARRIBA in-frame 11 1 high [INTRACHROMOSOMAL[chr10:18.61Mb]],inversion HTRA1 NA SH3PXD2A NA TumorSuppressorGene, Oncogene NA NA NA NA +10:122462124 10:103661114 HTRA1--SH3PXD2A BS_1SVVER1H STARFUSION in-frame 12 1 NA [INTRACHROMOSOMAL[chr10:18.61Mb]] HTRA1 NA SH3PXD2A NA TumorSuppressorGene, Oncogene NA NA NA NA +14:49862563 6:52995635 RN7SL2--7SK BS_1SVVER1H STARFUSION other 5 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862572 6:52995769 RN7SL2--7SK BS_1SVVER1H STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862574 6:52995637 RN7SL2--7SK BS_1SVVER1H STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:20343234 14:49586587 RPPH1--AL139099.5 BS_1SVVER1H STARFUSION other 3 9 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA AL139099.5 NA NA NA NA NA NA +14:20343231 14:49586591 RPPH1--RN7SL1 BS_1SVVER1H STARFUSION other 3 9 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA RN7SL1 NA NA NA NA NA NA +10:103693028 10:122488902 SH3PXD2A--HTRA1 BS_1SVVER1H ARRIBA in-frame 87 13 high [ChimerSeq,INTRACHROMOSOMAL[chr10:18.61Mb]],inversion SH3PXD2A NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA +10:103668608 10:122488902 SH3PXD2A--HTRA1 BS_1SVVER1H ARRIBA in-frame 10 15 high [ChimerSeq,INTRACHROMOSOMAL[chr10:18.61Mb]],inversion SH3PXD2A NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA +10:103693028 10:122488902 SH3PXD2A--HTRA1 BS_1SVVER1H STARFUSION in-frame 103 19 NA [ChimerSeq,INTRACHROMOSOMAL[chr10:18.61Mb]] SH3PXD2A NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1T19NFJ8 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1T19NFJ8 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:132985512 4:133078462 AC110751.1--AC105383.1 BS_1T19NFJ8 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr4:0.09Mb],LOCAL_REARRANGEMENT:-:[86634]],duplication AC110751.1 NA AC105383.1 NA NA NA NA NA NA +14:36215058 14:36164120 AL162511.1--LINC00609 BS_1T19NFJ8 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_1T19NFJ8 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_1T19NFJ8 ARRIBA frameshift 35 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_1T19NFJ8 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_1T19NFJ8 ARRIBA frameshift 22 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_1T19NFJ8 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_1T19NFJ8 ARRIBA in-frame 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_1T19NFJ8 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211107377 AL590132.1--KCNH1 BS_1T19NFJ8 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_1T19NFJ8 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_1T19NFJ8 ARRIBA other 8 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_1T19NFJ8 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_1T19NFJ8 ARRIBA in-frame 6 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_1T19NFJ8 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_1T19NFJ8 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_1T19NFJ8 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_1T19NFJ8 ARRIBA in-frame 6 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_1T19NFJ8 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_1T19NFJ8 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100561397 CAVIN4--TMEFF1 BS_1T19NFJ8 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +3:2903005 3:2883145 CNTN4--CNTN4 BS_1T19NFJ8 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_1T19NFJ8 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_1T19NFJ8 ARRIBA frameshift 10 5 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +9:23731022 9:23765099 ELAVL2--ELAVL2 BS_1T19NFJ8 ARRIBA frameshift 10 3 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA +X:47649921 X:47652144 ELK1--UXT BS_1T19NFJ8 ARRIBA other 2 1 low [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:-:[1194]],duplication ELK1 NA UXT NA Oncogene, TranscriptionFactor NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_1T19NFJ8 ARRIBA in-frame 95 8 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_1T19NFJ8 STARFUSION other 63 36 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +X:14796160 X:14859334 GLRA2(64348)/NPM1P9(38316)--FANCB BS_1T19NFJ8 ARRIBA other 6 0 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_1T19NFJ8 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_1T19NFJ8 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +7:43501322 7:43492075 HECW1--HECW1 BS_1T19NFJ8 ARRIBA frameshift 7 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_1T19NFJ8 ARRIBA frameshift 35 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_1T19NFJ8 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_1T19NFJ8 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_1T19NFJ8 ARRIBA frameshift 22 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_1T19NFJ8 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_1T19NFJ8 ARRIBA in-frame 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211107377 KCNH1--AL590132.1 BS_1T19NFJ8 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211107377 KCNH1--AL590132.1 BS_1T19NFJ8 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_1T19NFJ8 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_1T19NFJ8 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_1T19NFJ8 ARRIBA frameshift 35 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_1T19NFJ8 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_1T19NFJ8 ARRIBA other 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +1:196373140 1:196479238 KCNT2--KCNT2 BS_1T19NFJ8 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA +14:38745144 14:38334252 LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_1T19NFJ8 ARRIBA other 4 0 low [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_1T19NFJ8 ARRIBA in-frame 15 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_1T19NFJ8 ARRIBA other 13 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_1T19NFJ8 ARRIBA frameshift 15 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +8:17341363 8:17373240 MTMR7--MTMR7 BS_1T19NFJ8 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_1T19NFJ8 ARRIBA other 13 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_1T19NFJ8 ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_1T19NFJ8 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +12:44665484 12:44714741 NELL2--NELL2 BS_1T19NFJ8 ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +10:53816239 10:53827548 PCDH15--PCDH15 BS_1T19NFJ8 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr10:1.83Mb]],duplication/non-canonical_splicing PCDH15 NA PCDH15 NA NA NA NA NA NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_1T19NFJ8 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_1T19NFJ8 ARRIBA in-frame 28 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_1T19NFJ8 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1T19NFJ8 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:158617205 4:158607972 RXFP1--RXFP1 BS_1T19NFJ8 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_1T19NFJ8 ARRIBA frameshift 7 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +12:21292164 12:21306988 SLCO1A2--SLCO1A2 BS_1T19NFJ8 ARRIBA in-frame 26 3 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA +8:50553179 8:50530177 SNTG1--SNTG1 BS_1T19NFJ8 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_1T19NFJ8 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +4:16323036 4:16288884 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_1T19NFJ8 ARRIBA other 2 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_1T19NFJ8 ARRIBA other 4 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +3:106579358 3:106843256 Y_RNA(63360)/Y_RNA(109320)--LINC00882 BS_1T19NFJ8 ARRIBA other 3 0 medium [],duplication Y_RNA Y_RNA LINC00882 NA NA NA NA NA NA +X:146955175 X:146916390 Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_1T19NFJ8 ARRIBA other 26 6 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1TPWFSK6 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1TPWFSK6 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:149212451 4:57032552 CP--IGFBP7 BS_1TPWFSK6 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr3--chr4]],translocation CP NA IGFBP7 NA NA TumorSuppressorGene, Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1TPWFSK6 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1TWCV047 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1TWCV047 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:92605307 1:94458607 EVI5--ABCD3 BS_1TWCV047 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:1.63Mb]],inversion EVI5 NA ABCD3 NA NA NA NA NA NA +13:51376048 13:45340056 INTS6--AL138963.3 BS_1TWCV047 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr13:6.01Mb]],inversion INTS6 NA AL138963.3 NA TumorSuppressorGene, Oncogene NA NA NA NA +13:51376048 13:45340056 INTS6--TPT1 BS_1TWCV047 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr13:6.01Mb]],inversion/5'-5' INTS6 NA TPT1 NA TumorSuppressorGene, Oncogene NA NA NA NA +14:59475869 14:59565275 L3HYPDH--CCDC175 BS_1TWCV047 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1TWCV047 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_1TWCV047 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1XJ73KBQ ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1XJ73KBQ ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:55888389 3:55992250 ERC2--ERC2 BS_1XJ73KBQ ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:79766651 8:70144848 HEY1--NCOA2 BS_1XJ73KBQ ARRIBA in-frame 252 54 high [HGNC_GENEFAM,ChimerKB,ChimerPub,Cosmic,INTRACHROMOSOMAL[chr8:9.36Mb]],deletion HEY1 NA NCOA2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +8:79766651 8:70141399 HEY1--NCOA2 BS_1XJ73KBQ ARRIBA in-frame 93 12 high [HGNC_GENEFAM,ChimerKB,ChimerPub,Cosmic,INTRACHROMOSOMAL[chr8:9.36Mb]],deletion HEY1 NA NCOA2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +3:188154021 3:151443884 LPP--IGSF10 BS_1XJ73KBQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:36.69Mb]],inversion LPP NA IGSF10 NA CosmicCensus, Oncogene NA NA NA NA +3:188154252 3:151443884 LPP--IGSF10 BS_1XJ73KBQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:36.69Mb]],inversion LPP NA IGSF10 NA CosmicCensus, Oncogene NA NA NA NA +3:188708393 8:106359476 LPP--OXR1 BS_1XJ73KBQ ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr3--chr8]],translocation LPP NA OXR1 NA CosmicCensus, Oncogene NA NA NA NA +3:146100318 8:84672655 PLOD2--RALYL BS_1XJ73KBQ ARRIBA frameshift 1 3 medium [INTERCHROMOSOMAL[chr3--chr8]],translocation/5'-5' PLOD2 NA RALYL NA NA NA NA NA NA +9:35657837 14:49586591 RMRP--AL139099.5 BS_1XJ73KBQ STARFUSION other 13 10 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL139099.5 NA Oncogene NA NA NA NA +9:35657837 14:49586591 RMRP--RN7SL1 BS_1XJ73KBQ STARFUSION other 13 10 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL1 NA Oncogene NA NA NA NA +14:49862557 14:20343402 RN7SL2--AL355075.4 BS_1XJ73KBQ STARFUSION other 8 6 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862572 14:20343401 RN7SL2--AL355075.4 BS_1XJ73KBQ STARFUSION other 7 6 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862557 14:20343402 RN7SL2--RPPH1 BS_1XJ73KBQ STARFUSION other 8 6 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862572 14:20343401 RN7SL2--RPPH1 BS_1XJ73KBQ STARFUSION other 7 6 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1XJ73KBQ ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:196392097 3:160921626 UBXN7--PPM1L BS_1XJ73KBQ ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr3:35.27Mb]],deletion/5'-5' UBXN7 NA PPM1L NA NA TumorSuppressorGene NA NA NA +8:105444381 3:179971665 ZFPM2--PEX5L BS_1XJ73KBQ ARRIBA frameshift 11 1 high [INTERCHROMOSOMAL[chr8--chr3]],translocation ZFPM2 NA PEX5L NA TranscriptionFactor NA NA NA NA +8:105444381 3:179898246 ZFPM2--PEX5L BS_1XJ73KBQ ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr8--chr3]],translocation ZFPM2 NA PEX5L NA TranscriptionFactor NA NA NA NA +8:105444381 3:179887784 ZFPM2--PEX5L BS_1XJ73KBQ ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr8--chr3]],translocation ZFPM2 NA PEX5L NA TranscriptionFactor NA NA NA NA +8:105444381 3:179971665 ZFPM2--PEX5L BS_1XJ73KBQ STARFUSION frameshift 11 1 NA [INTERCHROMOSOMAL[chr8--chr3]] ZFPM2 NA PEX5L NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1ZVXF5FE ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1ZVXF5FE ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_1ZVXF5FE STARFUSION other 22 7 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_1ZVXF5FE ARRIBA in-frame 4 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_1ZVXF5FE ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_21RE8W46 ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_21RE8W46 ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_21RE8W46 ARRIBA other 11 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +7:138861139 7:140781693 KIAA1549--BRAF BS_21RE8W46 ARRIBA in-frame 1 1 low [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_21RE8W46 ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:26189330 11:26309645 AC099687.1--ANO3 BS_23M72ABG STARFUSION other 11 4 NA [INTRACHROMOSOMAL[chr11:0.10Mb]] AC099687.1 NA ANO3 NA NA NA NA NA NA +4:138995912 4:139139497 AC109927.1--ELF2 BS_23M72ABG ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_REARRANGEMENT:-:[15466]],duplication AC109927.1 NA ELF2 NA NA TranscriptionFactor NA NA NA +11:125235115 11:78443648 PKNOX2--AP003086.2 BS_23M72ABG ARRIBA other 14 0 medium [INTRACHROMOSOMAL[chr11:46.72Mb]],duplication PKNOX2 NA AP003086.2 NA TranscriptionFactor NA NA NA NA +11:125235115 11:78443648 PKNOX2--AP003086.2 BS_23M72ABG STARFUSION other 15 0 NA [INTRACHROMOSOMAL[chr11:46.72Mb]] PKNOX2 NA AP003086.2 NA TranscriptionFactor NA NA NA NA +10:94032252 10:94005450 PLCE1--PIPSL(43910)/PLCE1(25362) BS_23M72ABG ARRIBA frameshift 2 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +11:75912039 11:109365068 UVRAG--AP003049.2 BS_23M72ABG ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr11:33.21Mb]],inversion UVRAG NA AP003049.2 NA TumorSuppressorGene NA NA NA NA +11:102223752 11:126234995 YAP1--FAM118B BS_23M72ABG ARRIBA in-frame 63 9 high [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA +11:102223752 11:126240792 YAP1--FAM118B BS_23M72ABG ARRIBA in-frame 1 1 medium [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA +11:102206074 11:126234995 YAP1--FAM118B BS_23M72ABG ARRIBA frameshift 1 1 medium [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA +11:102223752 11:126234995 YAP1--FAM118B BS_23M72ABG STARFUSION other 66 9 NA [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]] YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA +13:108218659 13:108665886 ABHD13--MYO16 BS_23QW0BBA ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr13:0.36Mb]],deletion ABHD13 NA MYO16 NA NA NA NA NA NA +13:108218659 13:108855443 ABHD13--MYO16 BS_23QW0BBA ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr13:0.36Mb]],deletion ABHD13 NA MYO16 NA NA NA NA NA NA +13:108218659 13:108992376 ABHD13--MYO16 BS_23QW0BBA ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr13:0.36Mb]],deletion ABHD13 NA MYO16 NA NA NA NA NA NA +13:108335572 13:108303253 AL138694.1--TNFSF13B BS_23QW0BBA ARRIBA frameshift 2 1 low [INTRACHROMOSOMAL[chr13:0.03Mb],LOCAL_REARRANGEMENT:+:[26870]],duplication AL138694.1 NA TNFSF13B NA NA Oncogene NA NA NA +2:189689964 2:189665376 ANKAR--ASNSD1 BS_23QW0BBA ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[3459]],duplication ANKAR NA ASNSD1 NA NA NA NA NA NA +11:69643472 13:109188586 CCND1--MYO16 BS_23QW0BBA ARRIBA frameshift 22 1 medium [INTERCHROMOSOMAL[chr11--chr13]],translocation CCND1 NA MYO16 NA CosmicCensus, Oncogene NA NA NA NA +11:69643472 13:109188586 CCND1--MYO16-AS1 BS_23QW0BBA ARRIBA frameshift 22 1 medium [INTERCHROMOSOMAL[chr11--chr13]],translocation/5'-5' CCND1 NA MYO16-AS1 NA CosmicCensus, Oncogene NA NA NA NA +17:1455877 17:7786124 CRK--DNAH2 BS_23QW0BBA ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr17:6.25Mb]],inversion CRK NA DNAH2 NA Oncogene NA NA NA NA +17:1455877 17:7786124 CRK--DNAH2 BS_23QW0BBA STARFUSION frameshift 10 1 NA [INTRACHROMOSOMAL[chr17:6.25Mb]] CRK NA DNAH2 NA Oncogene NA NA NA NA +11:69774856 11:69157174 FGF4--AP003071.5 BS_23QW0BBA ARRIBA other 7 0 medium [INTRACHROMOSOMAL[chr11:0.61Mb]],duplication/3'-3' FGF4 NA AP003071.5 NA Oncogene NA NA NA NA +11:78417646 11:61356728 GAB2--CYB561A3 BS_23QW0BBA ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr11:16.85Mb]],deletion GAB2 NA CYB561A3 NA Oncogene NA NA NA NA +11:78417646 11:61357828 GAB2--CYB561A3 BS_23QW0BBA ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:16.85Mb]],deletion GAB2 NA CYB561A3 NA Oncogene NA NA NA NA +13:109782042 13:108665886 IRS2--MYO16 BS_23QW0BBA ARRIBA in-frame 7 5 medium [INTRACHROMOSOMAL[chr13:0.54Mb]],inversion IRS2 NA MYO16 NA NA NA NA NA NA +13:109782042 13:108910003 IRS2--MYO16 BS_23QW0BBA ARRIBA in-frame 1 4 medium [INTRACHROMOSOMAL[chr13:0.54Mb]],inversion IRS2 NA MYO16 NA NA NA NA NA NA +13:109782042 13:108665886 IRS2--MYO16 BS_23QW0BBA STARFUSION in-frame 7 4 NA [INTRACHROMOSOMAL[chr13:0.54Mb]] IRS2 NA MYO16 NA NA NA NA NA NA +1:110356031 1:110345539 LAMTOR5-AS1--RBM15 BS_23QW0BBA ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:+:[435]],duplication LAMTOR5-AS1 NA RBM15 NA NA CosmicCensus, Oncogene NA NA NA +21:16487538 21:15352003 MIR99AHG--AF246928.1(5265)/AJ009632.2(18497) BS_23QW0BBA ARRIBA other 6 0 high [],duplication MIR99AHG NA AF246928.1 AJ009632.2 NA NA NA NA NA +11:68903723 11:91855969 MRPL21--AP003028.1(43675)/TUBB4BP4(93762) BS_23QW0BBA ARRIBA frameshift 3 0 medium [],inversion MRPL21 NA AP003028.1 TUBB4BP4 NA NA NA NA NA +8:125102487 4:88450620 NSMCE2--HERC6(7509)/HERC5(6497) BS_23QW0BBA ARRIBA frameshift 3 0 medium [],translocation NSMCE2 NA HERC6 HERC5 NA NA NA NA NA +11:69675190 11:69461858 ORAOV1--AP000439.1(17115)/AP000439.4(5740) BS_23QW0BBA ARRIBA frameshift 10 0 medium [],inversion ORAOV1 NA AP000439.1 AP000439.4 Oncogene NA NA NA NA +6:107458990 6:109768201 PDSS2--FIG4 BS_23QW0BBA ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr6:2.23Mb]],duplication/5'-5' PDSS2 NA FIG4 NA TumorSuppressorGene NA NA NA NA +16:47641090 16:60299829 PHKB--LINC02141(245856)/AC018554.2(57385) BS_23QW0BBA ARRIBA frameshift 2 0 high [],inversion PHKB NA LINC02141 AC018554.2 NA NA NA NA NA +17:16299978 17:3526699 PIGL--TRPV3 BS_23QW0BBA ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr17:12.66Mb]],duplication/5'-5' PIGL NA TRPV3 NA NA NA NA NA NA +17:2236492 17:11029729 SMG6--AC015908.2(148834)/RN7SL601P(127726) BS_23QW0BBA ARRIBA frameshift 3 0 medium [],inversion SMG6 NA AC015908.2 RN7SL601P Oncogene NA NA NA NA +17:16006568 17:7467327 TTC19--ZBTB4 BS_23QW0BBA ARRIBA frameshift 9 2 high [INTRACHROMOSOMAL[chr17:8.52Mb]],inversion TTC19 NA ZBTB4 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +17:16006568 17:7467327 TTC19--ZBTB4 BS_23QW0BBA STARFUSION other 9 2 NA [INTRACHROMOSOMAL[chr17:8.52Mb]] TTC19 NA ZBTB4 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +17:4307021 17:13777349 UBE2G1--COX10-AS1 BS_23QW0BBA ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr17:9.39Mb]],duplication UBE2G1 NA COX10-AS1 NA NA NA NA NA NA +17:4307021 17:13777349 UBE2G1--COX10-AS1 BS_23QW0BBA STARFUSION other 11 1 NA [INTRACHROMOSOMAL[chr17:9.39Mb]] UBE2G1 NA COX10-AS1 NA NA NA NA NA NA +17:5078575 17:15974679 ZFP3--ADORA2B BS_23QW0BBA ARRIBA other 7 0 high [INTRACHROMOSOMAL[chr17:10.85Mb]],deletion ZFP3 NA ADORA2B NA TranscriptionFactor NA NA NA NA +9:96763118 17:37874313 ZNF510--YWHAEP7 BS_23QW0BBA ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr9--chr17]],translocation ZNF510 NA YWHAEP7 NA TranscriptionFactor NA NA NA NA +17:4142542 17:13777349 ZZEF1--COX10-AS1 BS_23QW0BBA ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr17:9.61Mb]],duplication ZZEF1 NA COX10-AS1 NA NA NA NA NA NA +17:4142542 17:13756729 ZZEF1--COX10-AS1 BS_23QW0BBA ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:9.61Mb]],duplication ZZEF1 NA COX10-AS1 NA NA NA NA NA NA +17:4142542 17:13777349 ZZEF1--COX10-AS1 BS_23QW0BBA STARFUSION other 11 0 NA [INTRACHROMOSOMAL[chr17:9.61Mb]] ZZEF1 NA COX10-AS1 NA NA NA NA NA NA +2:139368484 2:139339254 AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_23W9EPFE ARRIBA other 4 1 high [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_23W9EPFE ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +12:57846372 4:75180465 CTDSP2--AC110760.3(78522)/AC093870.1(14402) BS_23W9EPFE ARRIBA frameshift 2 0 medium [],translocation CTDSP2 NA AC110760.3 AC093870.1 NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_23W9EPFE ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_23W9EPFE ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:89418044 8:89725641 KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_23W9EPFE ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +12:21292164 12:21306988 SLCO1A2--SLCO1A2 BS_23W9EPFE ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_24AHZ9ZW ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_24AHZ9ZW ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_24AHZ9ZW ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_24AHZ9ZW ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_24AHZ9ZW ARRIBA other 9 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +X:150471490 X:150469745 MAMLD1--MAMLD1 BS_24AHZ9ZW ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA +10:54183444 10:54214048 PCDH15--PCDH15 BS_24AHZ9ZW ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr10:1.83Mb]],duplication/non-canonical_splicing PCDH15 NA PCDH15 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_24AHZ9ZW ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_258RRGDM ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_258RRGDM ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_258RRGDM ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_258RRGDM ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_258RRGDM ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_258RRGDM ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_258RRGDM ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_258RRGDM ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_258RRGDM ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_258RRGDM ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_258RRGDM ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +1:58506060 1:58539310 DAB1--OMA1 BS_258RRGDM ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58253807 1:58539310 DAB1--OMA1 BS_258RRGDM ARRIBA other 2 2 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58534331 DAB1--OMA1 BS_258RRGDM ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58527261 1:58539310 DAB1--OMA1 BS_258RRGDM ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58536741 DAB1--OMA1 BS_258RRGDM ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58527261 1:58536741 DAB1--OMA1 BS_258RRGDM ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +20:54610523 20:54554933 DOK5--DOK5 BS_258RRGDM ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_258RRGDM ARRIBA in-frame 47 5 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_258RRGDM ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_258RRGDM ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_258RRGDM ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_258RRGDM ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_258RRGDM ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_258RRGDM ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_258RRGDM ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_258RRGDM ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_258RRGDM ARRIBA frameshift 2 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +6:118813102 6:118856545 MCM9--MCM9 BS_258RRGDM ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +20:46474501 20:46504740 MKRN7P--ZNF334 BS_258RRGDM ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_258RRGDM ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +2:100965766 2:100948235 NPAS2--NPAS2 BS_258RRGDM ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing NPAS2 NA NPAS2 NA TumorSuppressorGene, TranscriptionFactor TumorSuppressorGene, TranscriptionFactor NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_258RRGDM ARRIBA in-frame 16 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_258RRGDM ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_258RRGDM ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +X:19607938 X:19687691 SH3KBP1--SH3KBP1 BS_258RRGDM ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.35Mb]],duplication/non-canonical_splicing SH3KBP1 NA SH3KBP1 NA NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_258RRGDM ARRIBA frameshift 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_258RRGDM ARRIBA other 3 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_25T139TX ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_25T139TX ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:94032252 10:94005450 PLCE1--PIPSL(43910)/PLCE1(25362) BS_25T139TX ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_25T139TX ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_264RCK7G ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_264RCK7G ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_264RCK7G ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_264RCK7G ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_264RCK7G ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_273HKCT4 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_273HKCT4 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_273HKCT4 ARRIBA other 18 3 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_273HKCT4 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_273HKCT4 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_273HKCT4 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_273HKCT4 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_273HKCT4 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_273HKCT4 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211063737 AL590132.1--KCNH1 BS_273HKCT4 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_273HKCT4 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +21:39646623 21:39642368 B3GALT5--B3GALT5 BS_273HKCT4 ARRIBA other 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.12Mb]],duplication B3GALT5 NA B3GALT5 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_273HKCT4 ARRIBA frameshift 9 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_273HKCT4 ARRIBA in-frame 17 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_273HKCT4 ARRIBA in-frame 22 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_273HKCT4 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_273HKCT4 ARRIBA other 19 2 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_273HKCT4 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_273HKCT4 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_273HKCT4 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_273HKCT4 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_273HKCT4 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_273HKCT4 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_273HKCT4 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_273HKCT4 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_273HKCT4 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +14:62950133 14:62950559 KCNH5--KCNH5 BS_273HKCT4 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.40Mb]],duplication/non-canonical_splicing KCNH5 NA KCNH5 NA NA NA NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_273HKCT4 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_273HKCT4 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +1:149607554 1:143974544 LINC00869--FAM72C(2579)/SRGAP2D(543) BS_273HKCT4 ARRIBA other 3 0 medium [],duplication LINC00869 NA FAM72C SRGAP2D NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_273HKCT4 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_273HKCT4 ARRIBA frameshift 15 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_273HKCT4 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_273HKCT4 ARRIBA in-frame 6 3 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_27QE6BV7 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_27QE6BV7 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:6285380 22:17905054 ACOT7--MICAL3 BS_27QE6BV7 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr1--chr22]],translocation ACOT7 NA MICAL3 NA NA NA NA NA NA +5:91102340 5:90781430 ADGRV1--ADGRV1 BS_27QE6BV7 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_27QE6BV7 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +22:29290515 6:143942795 EWSR1--PLAGL1 BS_27QE6BV7 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +22:29288786 6:143942663 EWSR1--PLAGL1 BS_27QE6BV7 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +22:29287134 6:143942663 EWSR1--PLAGL1 BS_27QE6BV7 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_27QE6BV7 ARRIBA other 3 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +12:44665484 12:44714741 NELL2--NELL2 BS_27QE6BV7 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +6:143948342 6:112224342 PLAGL1--LAMA4 BS_27QE6BV7 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr6:31.69Mb]],deletion PLAGL1 NA LAMA4 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_27QE6BV7 ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +X:12065575 X:12498680 Y_RNA(10649)/FRMPD4(72891)--FRMPD4 BS_27QE6BV7 ARRIBA other 3 0 high [],deletion Y_RNA FRMPD4 FRMPD4 NA NA NA NA NA NA +10:21369967 10:21172477 AL158209.1--NEBL BS_28CDASF7 STARFUSION other 11 2 NA [INTRACHROMOSOMAL[chr10:0.17Mb]] AL158209.1 NA NEBL NA NA NA NA NA NA +X:103517374 X:103555111 RAB40A--RAB40A(35622)/TCEAL4(21120) BS_28CDASF7 ARRIBA other 1 2 high [],duplication RAB40A NA RAB40A TCEAL4 NA NA NA NA NA +9:271729 X:106348026 DOCK8--AL133271.1(20202)/Y_RNA(78542) BS_29006KEX ARRIBA frameshift 2 0 medium [],translocation DOCK8 NA AL133271.1 Y_RNA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_29CPJ040 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_29CPJ040 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:20343074 6:52995778 AL355075.4--7SK BS_29CPJ040 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] AL355075.4 NA 7SK NA NA NA NA NA NA +14:20343074 14:49862664 AL355075.4--RN7SL2 BS_29CPJ040 STARFUSION other 6 14 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] AL355075.4 NA RN7SL2 NA NA NA NA NA NA +14:20343074 14:49862680 AL355075.4--RN7SL2 BS_29CPJ040 STARFUSION other 4 14 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] AL355075.4 NA RN7SL2 NA NA NA NA NA NA +14:49862561 6:52995634 RN7SL2--7SK BS_29CPJ040 STARFUSION other 6 7 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:20343074 6:52995773 RPPH1--7SK BS_29CPJ040 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RPPH1 NA 7SK NA NA NA NA NA NA +14:20343075 14:49862667 RPPH1--RN7SL2 BS_29CPJ040 STARFUSION other 6 14 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RPPH1 NA RN7SL2 NA NA NA NA NA NA +14:20343074 14:49862680 RPPH1--RN7SL2 BS_29CPJ040 STARFUSION other 4 14 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RPPH1 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_29CPJ040 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_29X4ZX6Q ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +1:120489811 1:119471095 AC241952.1--HSD3BP1 BS_29X4ZX6Q ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr1:1.02Mb]],inversion AC241952.1 NA HSD3BP1 NA NA NA NA NA NA +2:186743575 2:16208220 FAM171B--AC010745.1(3994)/AC010745.2(15827) BS_29X4ZX6Q ARRIBA frameshift 9 2 medium [],inversion FAM171B NA AC010745.1 AC010745.2 NA NA NA NA NA +2:15461201 2:192629921 NBAS--AC062039.1 BS_29X4ZX6Q ARRIBA frameshift 12 2 medium [INTRACHROMOSOMAL[chr2:177.07Mb]],inversion NBAS NA AC062039.1 NA NA NA NA NA NA +2:15461201 2:192645238 NBAS--AC062039.1 BS_29X4ZX6Q ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:177.07Mb]],inversion NBAS NA AC062039.1 NA NA NA NA NA NA +2:15461201 2:192629921 NBAS--AC062039.1 BS_29X4ZX6Q STARFUSION other 12 2 NA [INTRACHROMOSOMAL[chr2:177.07Mb]] NBAS NA AC062039.1 NA NA NA NA NA NA +2:15452681 2:192506187 NBAS--TMEFF2(310478)/AC062039.1(123732) BS_29X4ZX6Q ARRIBA other 93 10 medium [],inversion NBAS NA TMEFF2 AC062039.1 NA TumorSuppressorGene NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_29X4ZX6Q ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +2:178306286 2:205683091 OSBPL6--NRP2 BS_29X4ZX6Q ARRIBA frameshift 33 1 high [INTRACHROMOSOMAL[chr2:27.28Mb]],deletion OSBPL6 NA NRP2 NA NA NA NA NA NA +2:178306286 2:205697544 OSBPL6--NRP2 BS_29X4ZX6Q ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:27.28Mb]],deletion OSBPL6 NA NRP2 NA NA NA NA NA NA +2:178306286 2:205683091 OSBPL6--NRP2 BS_29X4ZX6Q STARFUSION other 33 1 NA [INTRACHROMOSOMAL[chr2:27.28Mb]] OSBPL6 NA NRP2 NA NA NA NA NA NA +2:178306286 2:205650104 OSBPL6--PARD3B(29942)/NRP2(31886) BS_29X4ZX6Q ARRIBA frameshift 10 0 high [],deletion OSBPL6 NA PARD3B NRP2 NA NA NA NA NA +21:31690797 20:32720050 SCAF4--COMMD7 BS_29X4ZX6Q ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr21--chr20]],translocation/5'-5' SCAF4 NA COMMD7 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_2A162JH9 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_2A162JH9 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93656437 15:93553605 AC110023.1--AC091078.1 BS_2A162JH9 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_2A162JH9 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93557472 AC110023.1--AC091078.1 BS_2A162JH9 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +6:36902434 14:100987150 C6orf89--MEG8 BS_2A162JH9 ARRIBA frameshift 36 3 high [INTERCHROMOSOMAL[chr6--chr14]],translocation/5'-5' C6orf89 NA MEG8 NA NA NA NA NA NA +2:149486345 2:149449049 LYPD6(12197)/MMADHC(83289)--LYPD6 BS_2A162JH9 ARRIBA other 5 2 high [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA +14:26595410 14:48557491 NOVA1--AL358335.2(65724)/AL512360.1(261869) BS_2A162JH9 ARRIBA frameshift 2 0 medium [],duplication NOVA1 NA AL358335.2 AL512360.1 NA NA NA NA NA +2:222294167 2:221750724 PAX3--AC068489.1(108911)/AC009302.1(193499) BS_2A162JH9 ARRIBA frameshift 9 2 medium [],deletion PAX3 NA AC068489.1 AC009302.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +2:222294167 2:221610388 PAX3--AC079834.1(17527)/AC068489.1(27155) BS_2A162JH9 ARRIBA frameshift 2 1 medium [],deletion PAX3 NA AC079834.1 AC068489.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +2:222294167 2:221587487 PAX3--AC079834.2(13033)/AC079834.1(4954) BS_2A162JH9 ARRIBA frameshift 39 6 high [],deletion PAX3 NA AC079834.2 AC079834.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +Y:5100707 Y:5098215 PCDH11Y--PCDH11Y BS_2A162JH9 ARRIBA in-frame 3 2 low [SELFIE,INTRACHROMOSOMAL[chrY:0.74Mb]],duplication/non-canonical_splicing PCDH11Y NA PCDH11Y NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_2A162JH9 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:77672042 11:79732674 RSF1--AP001978.1(120374)/AP001541.1(234131) BS_2A162JH9 ARRIBA frameshift 3 3 high [],inversion RSF1 NA AP001978.1 AP001541.1 Oncogene NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_2A162JH9 ARRIBA other 23 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +11:121024291 11:121622162 TBCEL--SORL1 BS_2A162JH9 ARRIBA other 23 2 high [INTRACHROMOSOMAL[chr11:0.36Mb]],deletion TBCEL NA SORL1 NA NA Oncogene NA NA NA +11:121036612 11:121622162 TBCEL--SORL1 BS_2A162JH9 ARRIBA other 7 2 high [INTRACHROMOSOMAL[chr11:0.36Mb]],deletion TBCEL NA SORL1 NA NA Oncogene NA NA NA +11:121024291 11:121625085 TBCEL--SORL1 BS_2A162JH9 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.36Mb]],deletion TBCEL NA SORL1 NA NA Oncogene NA NA NA +11:121024291 11:121622162 TBCEL--SORL1 BS_2A162JH9 STARFUSION other 23 3 NA [INTRACHROMOSOMAL[chr11:0.36Mb]] TBCEL NA SORL1 NA NA Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_2A5R9MEJ ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_2A5R9MEJ ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_2A5R9MEJ ARRIBA other 11 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +8:129679928 8:129102389 AC103718.1--LINC00976(136388)/LINC00977(114078) BS_2A5R9MEJ ARRIBA other 3 0 high [],deletion AC103718.1 NA LINC00976 LINC00977 NA NA NA NA NA +12:43492505 12:43532195 ADAMTS20--ADAMTS20 BS_2A5R9MEJ ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.20Mb]],duplication/non-canonical_splicing ADAMTS20 NA ADAMTS20 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_2A5R9MEJ ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_2A5R9MEJ ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_2A5R9MEJ ARRIBA in-frame 8 3 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +22:11068174 22:10752913 CU104787.1--U2(16630)/CU459211.1(186475) BS_2A5R9MEJ ARRIBA other 3 0 medium [],inversion CU104787.1 NA U2 CU459211.1 NA NA NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_2A5R9MEJ ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +6:24568781 6:24583702 KIAA0319--KIAA0319 BS_2A5R9MEJ ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing KIAA0319 NA KIAA0319 NA NA NA NA NA NA +6:132134483 6:132098931 LINC01013--AL021408.1 BS_2A5R9MEJ ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_2A5R9MEJ ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_2A5R9MEJ ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_2A5R9MEJ ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_2A5R9MEJ ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +12:125186866 12:103987050 TMEM132B--TDG BS_2A5R9MEJ ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA +3:167575918 3:167664448 WDR49--WDR49(10465)/PDCD10(18850) BS_2A5R9MEJ ARRIBA frameshift 2 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_2ADZNNV4 ARRIBA other 81 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_2ADZNNV4 ARRIBA other 81 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:48809642 2:48799306 AC009975.1--ELOBP3(18411)/AC009975.1(10034) BS_2ADZNNV4 ARRIBA other 1 8 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_2ADZNNV4 ARRIBA other 2 2 high [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +14:49586866 14:20343219 AL139099.5--AL355075.4 BS_2ADZNNV4 STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586866 14:20343219 AL139099.5--RPPH1 BS_2ADZNNV4 STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_2ADZNNV4 ARRIBA other 12 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +17:7656768 14:49545461 ATP1B2--AL139099.5 BS_2ADZNNV4 STARFUSION other 12 5 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA AL139099.5 NA NA NA NA NA NA +17:7656768 14:49545461 ATP1B2--RN7SL1 BS_2ADZNNV4 STARFUSION other 12 5 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL1 NA NA NA NA NA NA +11:16655255 11:16645989 C11orf58--C11orf58 BS_2ADZNNV4 ARRIBA other 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr11:0.14Mb]],duplication C11orf58 NA C11orf58 NA NA NA NA NA NA +5:61761022 5:61686883 C5orf64(9259)/AC026434.2(70925)--C5orf64 BS_2ADZNNV4 ARRIBA other 2 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_2ADZNNV4 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +3:178801793 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_2ADZNNV4 ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_2ADZNNV4 ARRIBA other 7 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_2ADZNNV4 ARRIBA in-frame 5 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +X:150473802 X:150469745 MAMLD1--MAMLD1 BS_2ADZNNV4 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA +20:46474501 20:46504740 MKRN7P--ZNF334 BS_2ADZNNV4 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA +12:44815986 12:44881839 NELL2--NELL2 BS_2ADZNNV4 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_2ADZNNV4 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +7:157571440 7:157595315 PTPRN2--PTPRN2 BS_2ADZNNV4 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:1.05Mb]],duplication/non-canonical_splicing PTPRN2 NA PTPRN2 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_2ADZNNV4 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +14:49586866 14:20343219 RN7SL1--AL355075.4 BS_2ADZNNV4 STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586866 14:20343219 RN7SL1--RPPH1 BS_2ADZNNV4 STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_2ADZNNV4 ARRIBA other 81 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_2ADZNNV4 ARRIBA other 7 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_2ADZNNV4 ARRIBA other 4 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +9:70681506 9:70784279 TRPM3--TRPM3 BS_2ADZNNV4 ARRIBA in-frame 21 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_2AR3AP0N ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_2AR3AP0N ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_2AR3AP0N ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_2AR3AP0N ARRIBA in-frame 26 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_2AR3AP0N ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +7:127242695 7:127243515 GRM8--GRM8 BS_2AR3AP0N ARRIBA frameshift 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_2AR3AP0N ARRIBA frameshift 2 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +4:44447563 9:84867243 KCTD8--NTRK2 BS_2AR3AP0N ARRIBA in-frame 11 0 high [INTERCHROMOSOMAL[chr4--chr9]],translocation KCTD8 NA NTRK2 NA NA Oncogene, Kinase NA NA NA +4:44293404 9:84867243 KCTD8--NTRK2 BS_2AR3AP0N ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr4--chr9]],translocation KCTD8 NA NTRK2 NA NA Oncogene, Kinase NA NA NA +4:44293404 9:84861040 KCTD8--NTRK2 BS_2AR3AP0N ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr4--chr9]],translocation KCTD8 NA NTRK2 NA NA Oncogene, Kinase NA NA NA +4:44293799 9:84867243 KCTD8--NTRK2 BS_2AR3AP0N ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr4--chr9]],translocation KCTD8 NA NTRK2 NA NA Oncogene, Kinase NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_2AR3AP0N ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_2AR3AP0N ARRIBA other 6 0 medium [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_2AR3AP0N ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_2AR3AP0N ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +9:84752085 4:44175250 NTRK2--KCTD8 BS_2AR3AP0N ARRIBA in-frame 4 0 medium [INTERCHROMOSOMAL[chr9--chr4]],translocation NTRK2 NA KCTD8 NA Oncogene, Kinase NA NA NA NA +9:84867431 4:44293831 NTRK2--KCTD8 BS_2AR3AP0N ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr9--chr4]],translocation NTRK2 NA KCTD8 NA Oncogene, Kinase NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_2AR3AP0N ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_2AR3AP0N ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:131260259 10:131309299 TCERG1L--TCERG1L BS_2AR3AP0N ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA +4:176066079 4:175701767 WDR17--GPM6A BS_2AR3AP0N ARRIBA other 3 0 medium [GTEx,INTRACHROMOSOMAL[chr4:0.06Mb],LOCAL_INVERSION:+:-:[63170]],inversion WDR17 NA GPM6A NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_2EMW8ZG3 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_2EMW8ZG3 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:186633684 4:185274005 FAT1--SNX25 BS_2EMW8ZG3 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr4:1.22Mb]],deletion/5'-5' FAT1 NA SNX25 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +2:237627740 6:157148624 LRRFIP1--ARID1B BS_2EMW8ZG3 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr2--chr6]],translocation LRRFIP1 NA ARID1B NA Oncogene CosmicCensus, Oncogene NA NA NA +3:15016254 2:238592827 NR2C2--LINC01107(37773)/LINC01937(127497) BS_2EMW8ZG3 ARRIBA frameshift 2 0 medium [],translocation NR2C2 NA LINC01107 LINC01937 TumorSuppressorGene, TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_2EMW8ZG3 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:167575918 3:167633532 WDR49--WDR49 BS_2EMW8ZG3 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.18Mb]],duplication/non-canonical_splicing WDR49 NA WDR49 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_2EN3X6HB ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_2EN3X6HB ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:145214677 1:148879699 AC241585.2--PDE4DIP BS_2EN3X6HB ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr1:3.59Mb]],duplication/5'-5' AC241585.2 NA PDE4DIP NA NA CosmicCensus, Oncogene NA NA NA +12:1770326 12:93379417 ADIPOR2--NUDT4 BS_2EN3X6HB ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr12:91.59Mb]],deletion ADIPOR2 NA NUDT4 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_2EN3X6HB ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +15:69677640 15:69563116 PCAT29--DRAIC BS_2HN96129 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_2HN96129 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_2KJ2YAZR ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_2KJ2YAZR ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_2KJ2YAZR ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +10:4911072 10:4830675 AKR1C6P(19097)/U8(51364)--AKR1E2 BS_2KJ2YAZR ARRIBA other 1 0 low [],duplication AKR1C6P U8 AKR1E2 NA NA NA NA NA NA +17:7656768 14:49862815 ATP1B2--RN7SL2 BS_2KJ2YAZR STARFUSION other 25 9 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +11:16655255 11:16645989 C11orf58--C11orf58 BS_2KJ2YAZR ARRIBA other 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr11:0.14Mb]],duplication C11orf58 NA C11orf58 NA NA NA NA NA NA +5:61755944 5:61703866 C5orf64--C5orf64 BS_2KJ2YAZR ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.11Mb]],duplication C5orf64 NA C5orf64 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_2KJ2YAZR ARRIBA other 5 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_2KJ2YAZR ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995782 14:20343275 7SK--AL355075.4 BS_2R9TCR03 STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL355075.4 NA NA NA NA NA NA +6:52995782 14:20343275 7SK--RPPH1 BS_2R9TCR03 STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_2R9TCR03 ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_2R9TCR03 ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_2R9TCR03 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +14:49586855 14:20343399 AL139099.5--AL355075.4 BS_2R9TCR03 STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586855 14:20343399 AL139099.5--RPPH1 BS_2R9TCR03 STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_2R9TCR03 ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_2R9TCR03 ARRIBA frameshift 3 0 medium [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +9:271729 X:17363414 DOCK8--snoU13(5381)/NHS(12006) BS_2R9TCR03 ARRIBA frameshift 2 0 high [],translocation DOCK8 NA snoU13 NHS NA NA NA NA NA +6:52995908 14:49862668 RN7SK--RN7SL2 BS_2R9TCR03 STARFUSION other 9 17 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +14:49586856 14:20343399 RN7SL1--AL355075.4 BS_2R9TCR03 STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586855 14:20343404 RN7SL1--RPPH1 BS_2R9TCR03 STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +14:49862557 6:52995629 RN7SL2--RN7SK BS_2R9TCR03 STARFUSION other 12 21 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL2 NA RN7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_2R9TCR03 ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_2SFTWNVE ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_2SFTWNVE ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_2SFTWNVE ARRIBA other 15 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_2SFTWNVE ARRIBA other 2 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +14:34913735 14:34934131 AL121603.2(37276)/SRP54-AS1(7123)--SRP54-AS1 BS_2SFTWNVE ARRIBA other 1 1 low [],duplication AL121603.2 SRP54-AS1 SRP54-AS1 NA NA NA NA NA NA +1:219241308 1:219210515 AL360093.1(15811)/AC096642.1(29466)--LYPLAL1 BS_2SFTWNVE ARRIBA other 1 0 low [],duplication AL360093.1 AC096642.1 LYPLAL1 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_2SFTWNVE ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +2:201330470 2:201362686 ALS2CR12--ALS2CR12(5288)/TRAK2(14521) BS_2SFTWNVE ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_2SFTWNVE ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +3:37416724 3:37379042 C3orf35--GOLGA4(12291)/C3orf35(7227) BS_2SFTWNVE ARRIBA other 1 1 high [],duplication C3orf35 NA GOLGA4 C3orf35 NA NA NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_2SFTWNVE ARRIBA in-frame 25 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_2SFTWNVE ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_2SFTWNVE ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_2SFTWNVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_2SFTWNVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_2SFTWNVE ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_2SFTWNVE ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_2SFTWNVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_2SFTWNVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +4:90628232 4:86805279 CCSER1--PTPN13 BS_2SFTWNVE ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr4:3.31Mb]],duplication CCSER1 NA PTPN13 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +15:92921755 10:11197687 CHD2--CELF2 BS_2SFTWNVE ARRIBA other 1 2 medium [INTERCHROMOSOMAL[chr15--chr10]],translocation CHD2 NA CELF2 NA CosmicCensus, Oncogene NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_2SFTWNVE ARRIBA other 36 7 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_2SFTWNVE ARRIBA frameshift 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_2SFTWNVE ARRIBA frameshift 15 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +14:65751068 14:65721775 FUT8(6947)/AL391261.1(128524)--FUT8 BS_2SFTWNVE ARRIBA other 5 0 medium [],duplication FUT8 AL391261.1 FUT8 NA Oncogene Oncogene NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_2SFTWNVE STARFUSION other 31 15 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_2SFTWNVE ARRIBA other 3 0 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +14:59456438 14:59551436 GPR135--CCDC175 BS_2SFTWNVE ARRIBA other 3 3 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59568380 GPR135--CCDC175 BS_2SFTWNVE ARRIBA other 1 4 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59565275 GPR135--CCDC175 BS_2SFTWNVE ARRIBA other 1 4 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59565275 GPR135--CCDC175 BS_2SFTWNVE ARRIBA other 1 2 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59551436 GPR135--CCDC175 BS_2SFTWNVE ARRIBA other 1 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59540746 GPR135--CCDC175 BS_2SFTWNVE ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_2SFTWNVE ARRIBA frameshift 24 3 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_2SFTWNVE ARRIBA frameshift 23 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_2SFTWNVE ARRIBA frameshift 20 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_2SFTWNVE ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +2:7968145 2:8326424 LINC00298--LINC00299 BS_2SFTWNVE ARRIBA other 1 1 high [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00298 NA LINC00299 NA NA NA NA NA NA +8:10480192 8:10446339 LINCR-0001--AC104964.2(8027)/LINCR-0001(28226) BS_2SFTWNVE ARRIBA other 3 0 low [],duplication LINCR-0001 NA AC104964.2 LINCR-0001 NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_2SFTWNVE ARRIBA other 15 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_2SFTWNVE ARRIBA other 9 2 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_2SFTWNVE ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +13:19709542 13:19835689 PSPC1--ZMYM5 BS_2SFTWNVE ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_2SFTWNVE ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_2SFTWNVE ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_2SFTWNVE ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +7:128638878 7:128533648 RNU6-177P(11603)/AC018638.4(12307)--AC090114.3 BS_2SFTWNVE ARRIBA other 1 2 medium [],duplication RNU6-177P AC018638.4 AC090114.3 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_2SFTWNVE ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52142930 8:52166986 ST18--ST18 BS_2SFTWNVE ARRIBA frameshift 19 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:114981512 1:114923449 SYCP1--SYCP1 BS_2SFTWNVE ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +8:31143623 8:31080867 WRN--WRN BS_2SFTWNVE ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.14Mb]],duplication/non-canonical_splicing WRN NA WRN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +3:47037666 3:79270532 SETD2--ROBO1 BS_2W3NC4K1 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr3:31.43Mb]],inversion/5'-5' SETD2 NA ROBO1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_2WPQ8YCW ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_2WPQ8YCW ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +12:8136903 12:8091769 CLEC4A--NECAP1 BS_2WPQ8YCW ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[25773]],duplication CLEC4A NA NECAP1 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_2WPQ8YCW ARRIBA in-frame 5 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_2WPQ8YCW ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_2XD3MNKD ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_2XD3MNKD ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:132985512 4:133078462 AC110751.1--AC105383.1 BS_2XD3MNKD ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr4:0.09Mb],LOCAL_REARRANGEMENT:-:[86634]],duplication AC110751.1 NA AC105383.1 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_2XD3MNKD ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_2XD3MNKD ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_2XD3MNKD ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_2XD3MNKD ARRIBA frameshift 11 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_2XD3MNKD ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_2XD3MNKD ARRIBA frameshift 11 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_2XD3MNKD ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_2XD3MNKD ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_2XD3MNKD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +7:38432189 7:38461411 AMPH--AMPH BS_2XD3MNKD ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.25Mb]],duplication/non-canonical_splicing AMPH NA AMPH NA NA NA NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_2XD3MNKD ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +5:61761022 5:61686883 C5orf64(9259)/AC026434.2(70925)--C5orf64 BS_2XD3MNKD ARRIBA other 2 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_2XD3MNKD ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_2XD3MNKD ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_2XD3MNKD ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_2XD3MNKD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_2XD3MNKD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_2XD3MNKD ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_2XD3MNKD ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_2XD3MNKD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100561397 CAVIN4--TMEFF1 BS_2XD3MNKD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +10:12998338 10:13074100 CCDC3--CCDC3 BS_2XD3MNKD ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA +12:119752050 12:119761055 CIT--CIT BS_2XD3MNKD ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.19Mb]],duplication/non-canonical_splicing CIT NA CIT NA Kinase Kinase NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_2XD3MNKD ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_2XD3MNKD ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_2XD3MNKD ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +9:23731022 9:23765099 ELAVL2--ELAVL2 BS_2XD3MNKD ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA +4:65404374 4:65495543 EPHA5--EPHA5 BS_2XD3MNKD ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.35Mb]],duplication/non-canonical_splicing EPHA5 NA EPHA5 NA Kinase, Kinase Kinase, Kinase NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_2XD3MNKD ARRIBA in-frame 66 4 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +9:98385640 9:98406141 GABBR2--GABBR2 BS_2XD3MNKD ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.42Mb]],duplication/non-canonical_splicing GABBR2 NA GABBR2 NA NA NA NA NA NA +X:152189730 X:152208144 GABRA3--GABRA3 BS_2XD3MNKD ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.29Mb]],duplication/non-canonical_splicing GABRA3 NA GABRA3 NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_2XD3MNKD ARRIBA other 2 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +7:43501322 7:43492075 HECW1--HECW1 BS_2XD3MNKD ARRIBA frameshift 6 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_2XD3MNKD ARRIBA frameshift 11 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_2XD3MNKD ARRIBA frameshift 11 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_2XD3MNKD ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_2XD3MNKD ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_2XD3MNKD ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_2XD3MNKD ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_2XD3MNKD ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_2XD3MNKD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_2XD3MNKD ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_2XD3MNKD ARRIBA frameshift 11 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_2XD3MNKD ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +12:117761011 12:117761524 KSR2--KSR2 BS_2XD3MNKD ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.52Mb]],duplication/non-canonical_splicing KSR2 NA KSR2 NA Kinase, Kinase Kinase, Kinase NA NA NA +14:38745144 14:38334252 LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_2XD3MNKD ARRIBA other 3 0 low [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_2XD3MNKD ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +8:17341363 8:17373240 MTMR7--MTMR7 BS_2XD3MNKD ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_2XD3MNKD ARRIBA other 7 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_2XD3MNKD ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_2XD3MNKD ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +12:44665484 12:44714741 NELL2--NELL2 BS_2XD3MNKD ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_2XD3MNKD ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_2XD3MNKD ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_2XD3MNKD ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:240868587 1:240936706 RGS7--RGS7 BS_2XD3MNKD ARRIBA frameshift 15 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing RGS7 NA RGS7 NA CosmicCensus CosmicCensus NA NA NA +12:130406172 12:130422561 RIMBP2--RIMBP2 BS_2XD3MNKD ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.12Mb]],duplication/non-canonical_splicing RIMBP2 NA RIMBP2 NA NA NA NA NA NA +12:112651827 12:112646223 RPH3A--RPH3A BS_2XD3MNKD ARRIBA other 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr12:0.33Mb]],duplication RPH3A NA RPH3A NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_2XD3MNKD ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_2XD3MNKD ARRIBA frameshift 12 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +12:21292164 12:21306988 SLCO1A2--SLCO1A2 BS_2XD3MNKD ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA +8:50553179 8:50530177 SNTG1--SNTG1 BS_2XD3MNKD ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_2XD3MNKD ARRIBA in-frame 3 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +3:42125614 3:42115354 TRAK1--TRAK1 BS_2XD3MNKD ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr3:0.21Mb]],duplication TRAK1 NA TRAK1 NA NA NA NA NA NA +8:35595657 8:35549292 UNC5D--UNC5D BS_2XD3MNKD ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.56Mb]],duplication/non-canonical_splicing UNC5D NA UNC5D NA TumorSuppressorGene TumorSuppressorGene NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_2XD3MNKD ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +X:146955175 X:146916390 Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_2XD3MNKD ARRIBA other 22 2 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA +X:146955175 X:146916390 Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_2XD3MNKD ARRIBA other 13 2 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_2YCJV2VV ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_2Z1MKS84 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_2Z1MKS84 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_2Z1MKS84 ARRIBA other 21 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_2Z1MKS84 ARRIBA other 7 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_2Z1MKS84 ARRIBA other 21 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_2Z1MKS84 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:93831572 8:93755047 TMEM67(12338)/AC084346.1(2882)--TMEM67 BS_2Z1MKS84 ARRIBA other 2 1 medium [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_2Z1MKS84 ARRIBA other 5 2 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +6:52995909 14:49586589 7SK--AL139099.5 BS_30VC3R2Q STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL139099.5 NA NA NA NA NA NA +6:52995909 14:49586589 7SK--RN7SL1 BS_30VC3R2Q STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_30VC3R2Q ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_30VC3R2Q ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:20343175 14:49586585 AL355075.4--AL139099.5 BS_30VC3R2Q STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA AL139099.5 NA NA NA NA NA NA +14:20343175 14:49586585 AL355075.4--RN7SL1 BS_30VC3R2Q STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA RN7SL1 NA NA NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_30VC3R2Q ARRIBA other 8 1 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +12:8238302 12:8208859 LINC02449--FAM66C BS_30VC3R2Q ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr12:0.02Mb],LOCAL_REARRANGEMENT:+:[19264]],duplication LINC02449 NA FAM66C NA NA NA NA NA NA +9:35657837 14:49586591 RMRP--AL139099.5 BS_30VC3R2Q STARFUSION other 25 5 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL139099.5 NA Oncogene NA NA NA NA +9:35657837 14:49586591 RMRP--RN7SL1 BS_30VC3R2Q STARFUSION other 25 5 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL1 NA Oncogene NA NA NA NA +6:52995908 14:49862688 RN7SK--RN7SL2 BS_30VC3R2Q STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +14:20343175 14:49586585 RPPH1--AL139099.5 BS_30VC3R2Q STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA AL139099.5 NA NA NA NA NA NA +14:20343282 14:49586588 RPPH1--RN7SL1 BS_30VC3R2Q STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA RN7SL1 NA NA NA NA NA NA +14:20343175 14:49586585 RPPH1--RN7SL1 BS_30VC3R2Q STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_30VC3R2Q ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +22:23295155 22:23868481 BCR--AP000350.4 BS_31TF0P1N ARRIBA in-frame 4 0 high [INTRACHROMOSOMAL[chr22:0.54Mb]],deletion BCR NA AP000350.4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:23292638 22:23868481 BCR--AP000350.4 BS_31TF0P1N ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr22:0.54Mb]],deletion BCR NA AP000350.4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:23295155 9:98809920 BCR--GALNT12 BS_31TF0P1N ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr22--chr9]],translocation/5'-5' BCR NA GALNT12 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:23295155 22:23868481 BCR--SLC2A11 BS_31TF0P1N ARRIBA in-frame 4 0 high [INTRACHROMOSOMAL[chr22:0.54Mb]],deletion BCR NA SLC2A11 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:23292638 22:23868481 BCR--SLC2A11 BS_31TF0P1N ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr22:0.54Mb]],deletion BCR NA SLC2A11 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:23179918 22:21962893 BCRP8--TOP3B BS_31TF0P1N ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:1.20Mb]],deletion BCRP8 NA TOP3B NA NA NA NA NA NA +22:24011367 9:77922345 CABIN1--GNAQ BS_31TF0P1N ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr22--chr9]],translocation CABIN1 NA GNAQ NA NA CosmicCensus, Oncogene NA NA NA +22:24011728 9:77922345 CABIN1--GNAQ BS_31TF0P1N ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr22--chr9]],translocation CABIN1 NA GNAQ NA NA CosmicCensus, Oncogene NA NA NA +1:102934449 1:103018859 COL11A1--COL11A1 BS_31TF0P1N ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing COL11A1 NA COL11A1 NA Oncogene Oncogene NA NA NA +5:61073214 5:61521263 NDUFAF2--ZSWIM6 BS_31TF0P1N ARRIBA in-frame 3 0 high [FA_CancerSupp,INTRACHROMOSOMAL[chr5:0.18Mb]],deletion NDUFAF2 NA ZSWIM6 NA NA NA NA NA NA +10:3082461 10:2646671 PFKP--AL713851.1(79432)/AC026396.1(289350) BS_31TF0P1N ARRIBA frameshift 2 0 medium [],duplication PFKP NA AL713851.1 AC026396.1 NA NA NA NA NA +22:27873738 9:98756606 PITPNB--ANKS6 BS_31TF0P1N ARRIBA in-frame 11 3 high [INTERCHROMOSOMAL[chr22--chr9]],translocation PITPNB NA ANKS6 NA NA NA NA NA NA +22:27873738 9:98756603 PITPNB--ANKS6 BS_31TF0P1N ARRIBA in-frame 7 3 high [INTERCHROMOSOMAL[chr22--chr9]],translocation PITPNB NA ANKS6 NA NA NA NA NA NA +22:27873738 9:98756606 PITPNB--ANKS6 BS_31TF0P1N STARFUSION in-frame 11 4 NA [INTERCHROMOSOMAL[chr22--chr9]] PITPNB NA ANKS6 NA NA NA NA NA NA +22:27873738 9:98756603 PITPNB--ANKS6 BS_31TF0P1N STARFUSION in-frame 8 4 NA [INTERCHROMOSOMAL[chr22--chr9]] PITPNB NA ANKS6 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_34201DKZ ARRIBA other 93 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_34201DKZ ARRIBA other 93 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:199070153 2:198579708 AC020718.1--AC019330.1 BS_34201DKZ ARRIBA other 9 3 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +2:199071420 2:198579708 AC020718.1--AC019330.1 BS_34201DKZ ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +2:199071746 2:198579708 AC020718.1--AC019330.1 BS_34201DKZ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_34201DKZ ARRIBA other 5 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +4:16426440 4:16256257 AC097515.1--TAPT1-AS1 BS_34201DKZ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16238771 AC097515.1--TAPT1-AS1 BS_34201DKZ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16400533 4:16320065 AC097515.1--TAPT1-AS1 BS_34201DKZ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_34201DKZ ARRIBA other 14 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_34201DKZ ARRIBA in-frame 19 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_34201DKZ ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +6:44376473 6:44352726 AL353588.1--AL353588.1 BS_34201DKZ ARRIBA other 18 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing AL353588.1 NA AL353588.1 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_34201DKZ ARRIBA other 9 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_34201DKZ ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:77018997 7:102703481 DTX2P1-UPK3BP1-PMS2P11--RASA4DP(13012)/FAM185A(45490) BS_34201DKZ ARRIBA other 1 1 high [],inversion DTX2P1-UPK3BP1-PMS2P11 NA RASA4DP FAM185A NA NA NA NA NA +3:55606780 3:55699512 ERC2--ERC2 BS_34201DKZ ARRIBA other 2 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:15369502 1:15367463 FHAD1--FHAD1 BS_34201DKZ ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA +11:105612434 11:105610908 GRIA4--GRIA4 BS_34201DKZ ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.37Mb]],duplication/non-canonical_splicing GRIA4 NA GRIA4 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_34201DKZ ARRIBA other 15 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +15:67421577 15:67372111 IQCH--IQCH BS_34201DKZ ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.25Mb]],duplication/non-canonical_splicing IQCH NA IQCH NA NA NA NA NA NA +10:96941556 12:4628804 LCOR--AKAP3 BS_34201DKZ ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr10--chr12]],translocation/3'-3' LCOR NA AKAP3 NA TranscriptionFactor NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_34201DKZ ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_34201DKZ ARRIBA other 14 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_34201DKZ ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +12:95665810 12:95833084 NTN4--AC090001.1 BS_34201DKZ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:95682707 12:95833084 NTN4--AC090001.1 BS_34201DKZ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:95710441 12:95833084 NTN4--AC090001.1 BS_34201DKZ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:95786939 12:95833084 NTN4--AC090001.1 BS_34201DKZ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_34201DKZ ARRIBA frameshift 21 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_34201DKZ ARRIBA other 93 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16256257 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_34201DKZ ARRIBA other 4 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +9:72805510 9:72742444 TMC1--TMC1 BS_34201DKZ ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.31Mb]],duplication/non-canonical_splicing TMC1 NA TMC1 NA NA NA NA NA NA +6:52995908 14:20343378 7SK--AL355075.4 BS_37GTVG4N STARFUSION other 5 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL355075.4 NA NA NA NA NA NA +6:52995908 14:20343378 7SK--RPPH1 BS_37GTVG4N STARFUSION other 5 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_37GTVG4N ARRIBA other 64 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_37GTVG4N ARRIBA other 64 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_37GTVG4N ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +22:32273507 22:32268288 AL008723.1--SLC5A4-AS1 BS_37GTVG4N STARFUSION other 25 4 NA [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]] AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_37GTVG4N ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +X:75624888 X:54530352 BRAFP1(39382)/TTC3P1(115943)--GNL3L BS_37GTVG4N ARRIBA other 6 2 medium [],duplication BRAFP1 TTC3P1 GNL3L NA NA NA NA NA NA +5:34108948 5:34169153 C1QTNF3-AMACR--AC138409.2 BS_37GTVG4N ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[40170]],duplication C1QTNF3-AMACR NA AC138409.2 NA NA NA NA NA NA +5:33998641 5:34169153 C1QTNF3-AMACR--AC138409.2 BS_37GTVG4N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[40170]],duplication C1QTNF3-AMACR NA AC138409.2 NA NA NA NA NA NA +5:34124418 5:34179097 C1QTNF3-AMACR--AC138409.2 BS_37GTVG4N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[40170]],duplication C1QTNF3-AMACR NA AC138409.2 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_37GTVG4N ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_37GTVG4N ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_37GTVG4N ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_37GTVG4N ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_37GTVG4N ARRIBA frameshift 3 3 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_37GTVG4N ARRIBA frameshift 68 11 high [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +X:102846020 X:15494849 LINC00630--BMX BS_37GTVG4N ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chrX:87.21Mb]],inversion/3'-3' LINC00630 NA BMX NA NA Kinase, Kinase NA NA NA +X:102846020 X:15491309 LINC00630--PIR BS_37GTVG4N ARRIBA other 2 1 high [INTRACHROMOSOMAL[chrX:87.28Mb]],inversion LINC00630 NA PIR NA NA NA NA NA NA +X:102827144 X:15491309 LINC00630--PIR BS_37GTVG4N ARRIBA other 2 0 high [INTRACHROMOSOMAL[chrX:87.28Mb]],inversion LINC00630 NA PIR NA NA NA NA NA NA +X:102839972 X:15491309 LINC00630--PIR BS_37GTVG4N ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chrX:87.28Mb]],inversion LINC00630 NA PIR NA NA NA NA NA NA +X:102770420 X:15491309 LINC00630--PIR BS_37GTVG4N ARRIBA other 1 0 low [INTRACHROMOSOMAL[chrX:87.28Mb]],inversion LINC00630 NA PIR NA NA NA NA NA NA +2:1839149 2:1892287 MYT1L--MYT1L BS_37GTVG4N ARRIBA frameshift 24 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_37GTVG4N ARRIBA in-frame 27 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_37GTVG4N ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_37GTVG4N ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_37GTVG4N ARRIBA frameshift 4 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19751271 13:19835689 PSPC1--ZMYM5 BS_37GTVG4N ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_37GTVG4N ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +15:23979211 15:23935211 PWRN4--AC021439.1 BS_37GTVG4N ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.03Mb],LOCAL_REARRANGEMENT:+:[33456]],duplication PWRN4 NA AC021439.1 NA NA NA NA NA NA +11:73716251 11:74498069 RAB6A--AP001372.2 BS_37GTVG4N ARRIBA frameshift 53 6 high [INTRACHROMOSOMAL[chr11:0.73Mb]],duplication/5'-5' RAB6A NA AP001372.2 NA NA NA NA NA NA +11:73716251 11:74492364 RAB6A--LIPT2 BS_37GTVG4N ARRIBA frameshift 5 2 medium [INTRACHROMOSOMAL[chr11:0.73Mb]],duplication RAB6A NA LIPT2 NA NA NA NA NA NA +11:73716251 11:74511224 RAB6A--POLD3 BS_37GTVG4N ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr11:0.83Mb]],duplication/5'-5' RAB6A NA POLD3 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_37GTVG4N ARRIBA other 64 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:130288227 6:130313093 SAMD3--SAMD3 BS_37GTVG4N ARRIBA other 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA +5:76301545 5:76300729 SV2C--SV2C BS_37GTVG4N ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.27Mb]],duplication/non-canonical_splicing SV2C NA SV2C NA NA NA NA NA NA +X:110171520 X:132429813 TMEM164--RAP2C-AS1 BS_37GTVG4N ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chrX:22.03Mb]],deletion TMEM164 NA RAP2C-AS1 NA NA NA NA NA NA +X:13734044 X:40588986 TRAPPC2--ATP6AP2 BS_37GTVG4N ARRIBA frameshift 129 19 high [INTRACHROMOSOMAL[chrX:26.84Mb]],inversion TRAPPC2 NA ATP6AP2 NA NA NA NA NA NA +X:13734525 X:40588986 TRAPPC2--ATP6AP2 BS_37GTVG4N ARRIBA other 9 0 medium [INTRACHROMOSOMAL[chrX:26.84Mb]],inversion TRAPPC2 NA ATP6AP2 NA NA NA NA NA NA +X:13734044 X:40591234 TRAPPC2--ATP6AP2 BS_37GTVG4N ARRIBA frameshift 1 3 medium [INTRACHROMOSOMAL[chrX:26.84Mb]],inversion TRAPPC2 NA ATP6AP2 NA NA NA NA NA NA +X:13734525 X:40591234 TRAPPC2--ATP6AP2 BS_37GTVG4N ARRIBA other 1 0 low [INTRACHROMOSOMAL[chrX:26.84Mb]],inversion TRAPPC2 NA ATP6AP2 NA NA NA NA NA NA +X:13734044 X:40588986 TRAPPC2--ATP6AP2 BS_37GTVG4N STARFUSION other 122 23 NA [INTRACHROMOSOMAL[chrX:26.84Mb]] TRAPPC2 NA ATP6AP2 NA NA NA NA NA NA +19:54426768 19:53670583 TTYH1--MIR512-2(1329)/MIR1323(1385) BS_37GTVG4N ARRIBA frameshift 7 4 medium [],duplication TTYH1 NA MIR512-2 MIR1323 Oncogene NA NA NA NA +19:54426768 19:53686166 TTYH1--MIR515-2(1075)/MIR519C(303) BS_37GTVG4N ARRIBA frameshift 5 0 medium [],duplication TTYH1 NA MIR515-2 MIR519C Oncogene NA NA NA NA +X:75417087 X:41621431 ZDHHC15--CASK BS_37GTVG4N ARRIBA frameshift 15 1 high [INTRACHROMOSOMAL[chrX:33.44Mb]],inversion/5'-5' ZDHHC15 NA CASK NA NA Kinase, Kinase NA NA NA +19:51949235 19:51948593 ZNF350-AS1--ZNF613 BS_37GTVG4N STARFUSION other 14 1 NA [INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:+:[375]] ZNF350-AS1 NA ZNF613 NA NA TranscriptionFactor NA NA NA +19:52453607 X:75379198 ZNF578--ZDHHC15 BS_37GTVG4N ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr19--chrX]],translocation ZNF578 NA ZDHHC15 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_398KYV92 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_398KYV92 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_398KYV92 ARRIBA frameshift 24 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_398KYV92 ARRIBA frameshift 16 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_398KYV92 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211107377 AL590132.1--KCNH1 BS_398KYV92 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_398KYV92 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_398KYV92 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211103496 1:211107377 AL590132.1--KCNH1 BS_398KYV92 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_398KYV92 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:26559779 11:26525635 ANO3--ANO3 BS_398KYV92 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr11:0.35Mb]],duplication/non-canonical_splicing ANO3 NA ANO3 NA NA NA NA NA NA +5:61755944 5:61686883 C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_398KYV92 ARRIBA other 1 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_398KYV92 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_398KYV92 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +4:150239875 4:150203795 DCLK2--DCLK2 BS_398KYV92 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.18Mb]],duplication/non-canonical_splicing DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_398KYV92 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +9:23762006 9:23765099 ELAVL2--ELAVL2 BS_398KYV92 ARRIBA frameshift 20 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_398KYV92 ARRIBA in-frame 49 5 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +9:98385640 9:98406141 GABBR2--GABBR2 BS_398KYV92 ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.42Mb]],duplication/non-canonical_splicing GABBR2 NA GABBR2 NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_398KYV92 ARRIBA frameshift 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_398KYV92 ARRIBA frameshift 24 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_398KYV92 ARRIBA frameshift 16 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_398KYV92 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_398KYV92 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211107377 KCNH1--AL590132.1 BS_398KYV92 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_398KYV92 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_398KYV92 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211082898 KCNH1--AL590132.1 BS_398KYV92 ARRIBA frameshift 4 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_398KYV92 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:211019256 KCNH1--AL590132.1 BS_398KYV92 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_398KYV92 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211103496 1:211107377 KCNH1--AL590132.1 BS_398KYV92 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_398KYV92 ARRIBA frameshift 24 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_398KYV92 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +2:8287338 2:8392968 LINC00299--LINC00299(9347)/AC011747.2(150624) BS_398KYV92 ARRIBA other 3 0 high [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_398KYV92 ARRIBA in-frame 18 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +14:46920012 14:47035304 MDGA2--MDGA2 BS_398KYV92 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +8:74612940 8:74500513 MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_398KYV92 ARRIBA other 4 0 medium [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA +6:61606290 6:61681060 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_398KYV92 ARRIBA other 2 0 low [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_398KYV92 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +12:44665484 12:44714741 NELL2--NELL2 BS_398KYV92 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_398KYV92 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +1:13782831 1:13769039 PRDM2--PRDM2 BS_398KYV92 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_398KYV92 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_398KYV92 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:66690316 1:66677004 SGIP1--SGIP1 BS_398KYV92 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SGIP1 NA SGIP1 NA NA NA NA NA NA +8:50502880 8:50438543 SNTG1--SNTG1 BS_398KYV92 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +14:75820161 14:75764615 TTLL5--TTLL5 BS_398KYV92 ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.32Mb]],duplication/non-canonical_splicing TTLL5 NA TTLL5 NA NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_398KYV92 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_399RPKC9 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_399RPKC9 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_399RPKC9 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_399RPKC9 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_399RPKC9 STARFUSION other 7 10 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_399RPKC9 ARRIBA frameshift 1 2 high [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +2:7968145 2:8312849 LINC00298--LINC00299 BS_399RPKC9 ARRIBA other 1 1 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00298 NA LINC00299 NA NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_399RPKC9 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_399RPKC9 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_399RPKC9 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_399RPKC9 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +6:52995909 14:49862666 7SK--RN7SL2 BS_39CGACC7 STARFUSION other 5 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995825 14:49862667 7SK--RN7SL2 BS_39CGACC7 STARFUSION other 4 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_39CGACC7 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_39CGACC7 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_39CGACC7 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_39CGACC7 ARRIBA frameshift 13 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211103496 1:211107377 AL590132.1--KCNH1 BS_39CGACC7 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_39CGACC7 ARRIBA frameshift 7 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_39CGACC7 ARRIBA frameshift 4 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_39CGACC7 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_39CGACC7 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_39CGACC7 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211107377 AL590132.1--KCNH1 BS_39CGACC7 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +2:201344170 2:201362686 ALS2CR12--ALS2CR12(5288)/TRAK2(14521) BS_39CGACC7 ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_39CGACC7 ARRIBA frameshift 1 0 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +2:231331897 2:231282059 ARMC9--ARMC9 BS_39CGACC7 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing ARMC9 NA ARMC9 NA NA NA NA NA NA +5:61761022 5:61686883 C5orf64(9259)/AC026434.2(70925)--C5orf64 BS_39CGACC7 ARRIBA other 1 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_39CGACC7 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +3:2903005 3:2883145 CNTN4--CNTN4 BS_39CGACC7 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_39CGACC7 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_39CGACC7 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +8:1633046 8:1565683 DLGAP2--DLGAP2 BS_39CGACC7 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.97Mb]],duplication/non-canonical_splicing DLGAP2 NA DLGAP2 NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_39CGACC7 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_39CGACC7 ARRIBA in-frame 48 7 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +9:98385640 9:98406141 GABBR2--GABBR2 BS_39CGACC7 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.42Mb]],duplication/non-canonical_splicing GABBR2 NA GABBR2 NA NA NA NA NA NA +4:46303460 4:46332682 GABRA2--GABRA2 BS_39CGACC7 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing GABRA2 NA GABRA2 NA NA NA NA NA NA +12:132247910 12:132262625 GALNT9--GALNT9 BS_39CGACC7 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing GALNT9 NA GALNT9 NA NA NA NA NA NA +4:6035904 4:6042227 JAKMIP1--JAKMIP1 BS_39CGACC7 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.17Mb]],duplication/non-canonical_splicing JAKMIP1 NA JAKMIP1 NA Oncogene Oncogene NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_39CGACC7 ARRIBA frameshift 13 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_39CGACC7 ARRIBA frameshift 7 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_39CGACC7 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211103496 1:211107377 KCNH1--AL590132.1 BS_39CGACC7 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_39CGACC7 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_39CGACC7 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_39CGACC7 ARRIBA frameshift 4 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:211019256 KCNH1--AL590132.1 BS_39CGACC7 ARRIBA in-frame 1 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_39CGACC7 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211107377 KCNH1--AL590132.1 BS_39CGACC7 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_39CGACC7 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_39CGACC7 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_39CGACC7 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_39CGACC7 ARRIBA frameshift 10 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +8:74612940 8:74500513 MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_39CGACC7 ARRIBA other 4 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_39CGACC7 ARRIBA other 8 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_39CGACC7 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +12:44665484 12:44714741 NELL2--NELL2 BS_39CGACC7 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_39CGACC7 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +6:165336123 6:165543568 PDE10A--PDE10A BS_39CGACC7 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA +6:12934237 6:12933633 PHACTR1--PHACTR1 BS_39CGACC7 ARRIBA frameshift 9 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.57Mb]],duplication PHACTR1 NA PHACTR1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_39CGACC7 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +13:19709542 13:19835689 PSPC1--ZMYM5 BS_39CGACC7 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_39CGACC7 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_39CGACC7 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +12:130406172 12:130414306 RIMBP2--RIMBP2 BS_39CGACC7 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.12Mb]],duplication/non-canonical_splicing RIMBP2 NA RIMBP2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_39CGACC7 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_39CGACC7 ARRIBA other 3 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +12:21292164 12:21306988 SLCO1A2--SLCO1A2 BS_39CGACC7 ARRIBA in-frame 14 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA +3:121318540 3:121279805 STXBP5L--STXBP5L BS_39CGACC7 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.52Mb]],duplication/non-canonical_splicing STXBP5L NA STXBP5L NA NA NA NA NA NA +X:146955175 X:146916390 Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_39CGACC7 ARRIBA other 15 0 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA +2:135313489 2:135390820 ZRANB3--ZRANB3 BS_39CGACC7 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.39Mb]],duplication/non-canonical_splicing ZRANB3 NA ZRANB3 NA NA NA NA NA NA +6:32120771 12:132720678 ATF6B--PGAM5 BS_3BDAG9YN ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr6--chr12]],translocation ATF6B NA PGAM5 NA TranscriptionFactor NA NA NA NA +16:65121880 9:77403236 CDH11--VPS13A BS_3BDAG9YN ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr16--chr9]],translocation CDH11 NA VPS13A NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +17:43546185 16:56981647 ETV4--CETP BS_3BDAG9YN ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr17--chr16]],translocation ETV4 NA CETP NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +11:33598947 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_3BDAG9YN ARRIBA frameshift 1 1 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +4:137532255 5:108867767 PCDH18--FER BS_3BDAG9YN ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr4--chr5]],translocation PCDH18 NA FER NA NA Kinase, Kinase NA NA NA +6:52995910 14:49862664 7SK--RN7SL2 BS_3BVVWHP5 STARFUSION other 5 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995858 14:49862679 7SK--RN7SL2 BS_3BVVWHP5 STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995785 14:49862666 7SK--RN7SL2 BS_3BVVWHP5 STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995883 14:49862670 7SK--RN7SL2 BS_3BVVWHP5 STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995921 14:49862665 7SK--RN7SL2 BS_3BVVWHP5 STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3BVVWHP5 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3BVVWHP5 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:158093531 4:158111913 AC017037.2(123916)/AC098679.4(15969)--AC098679.5 BS_3BVVWHP5 ARRIBA other 5 0 medium [],duplication AC017037.2 AC098679.4 AC098679.5 NA NA NA NA NA NA +14:49862572 9:35657886 RN7SL2--RMRP BS_3BVVWHP5 STARFUSION other 7 11 NA [INTERCHROMOSOMAL[chr14--chr9]] RN7SL2 NA RMRP NA NA Oncogene NA NA NA +14:49862563 9:35658012 RN7SL2--RMRP BS_3BVVWHP5 STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr14--chr9]] RN7SL2 NA RMRP NA NA Oncogene NA NA NA +14:49862556 9:35657930 RN7SL2--RMRP BS_3BVVWHP5 STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr14--chr9]] RN7SL2 NA RMRP NA NA Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3BVVWHP5 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161804595 2:161620915 SLC4A10--SLC4A10 BS_3BVVWHP5 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +11:44309597 11:65320544 ALX4--CDC42EP2 BS_3DCBDJAT ARRIBA frameshift 57 3 high [INTRACHROMOSOMAL[chr11:21.00Mb]],inversion ALX4 NA CDC42EP2 NA TranscriptionFactor NA NA NA NA +11:44309597 11:65320544 ALX4--CDC42EP2 BS_3DCBDJAT STARFUSION other 61 4 NA [INTRACHROMOSOMAL[chr11:21.00Mb]] ALX4 NA CDC42EP2 NA TranscriptionFactor NA NA NA NA +11:94859715 11:106506528 AMOTL1--AP002001.2(194737)/GUCY1A2(167484) BS_3DCBDJAT ARRIBA frameshift 16 2 high [],inversion AMOTL1 NA AP002001.2 GUCY1A2 NA NA NA Oncogene NA +11:94859871 11:106545075 AMOTL1--AP002001.2(233284)/GUCY1A2(128937) BS_3DCBDJAT ARRIBA frameshift 2 0 low [],inversion AMOTL1 NA AP002001.2 GUCY1A2 NA NA NA Oncogene NA +11:117858399 11:59511557 FXYD6--OR4D9 BS_3DCBDJAT ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr11:58.32Mb]],inversion FXYD6 NA OR4D9 NA NA NA NA NA NA +11:117876592 11:59514676 FXYD6--OR4D9 BS_3DCBDJAT ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:58.32Mb]],inversion FXYD6 NA OR4D9 NA NA NA NA NA NA +11:117876592 11:59529789 FXYD6--OR4D9(9086)/OR4D7P(1965) BS_3DCBDJAT ARRIBA other 2 0 medium [],inversion FXYD6 NA OR4D9 OR4D7P NA NA NA NA NA +11:117876592 11:59529789 FXYD6--OR4D9(9086)/OR4D7P(1965) BS_3DCBDJAT ARRIBA other 1 1 medium [],inversion FXYD6 NA OR4D9 OR4D7P NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_3DCBDJAT ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +11:96091892 11:102186018 MAML2--YAP1 BS_3DCBDJAT ARRIBA frameshift 4 0 high [CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion +11:96091892 11:102205893 MAML2--YAP1 BS_3DCBDJAT ARRIBA frameshift 4 0 medium [CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion +11:96091892 11:102114144 MAML2--YAP1 BS_3DCBDJAT ARRIBA in-frame 1 0 low [CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion +11:86022367 11:128954931 PICALM--TP53AIP1(11532)/ARHGAP32(10129) BS_3DCBDJAT ARRIBA frameshift 4 0 high [],inversion PICALM NA TP53AIP1 ARHGAP32 CosmicCensus, Oncogene NA NA NA NA +10:94032252 10:94005450 PLCE1--PIPSL(43910)/PLCE1(25362) BS_3DCBDJAT ARRIBA frameshift 1 1 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +11:12675561 11:17929383 TEAD1--SERGEF BS_3DCBDJAT ARRIBA other 9 0 high [INTRACHROMOSOMAL[chr11:4.84Mb]],deletion/5'-5' TEAD1 NA SERGEF NA TranscriptionFactor NA NA NA NA +11:102206074 11:96093517 YAP1--MAML2 BS_3DCBDJAT ARRIBA in-frame 27 2 high [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion +11:102209564 11:96093517 YAP1--MAML2 BS_3DCBDJAT ARRIBA in-frame 11 2 high [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion +11:102206086 11:96093517 YAP1--MAML2 BS_3DCBDJAT ARRIBA in-frame 11 2 high [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion +11:102206074 11:96093517 YAP1--MAML2 BS_3DCBDJAT STARFUSION in-frame 27 3 NA [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]] YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion +16:29082041 4:113174416 AC009093.3--ANK2 BS_3EVSN5QD ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3EVSN5QD ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:168910814 3:168821193 LINC02082--EGFEM1P BS_3EVSN5QD ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:0.07Mb],LOCAL_REARRANGEMENT:+:[72767]],duplication LINC02082 NA EGFEM1P NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3EVSN5QD ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161710751 2:161620915 SLC4A10--SLC4A10 BS_3EVSN5QD ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +7:7267442 7:7234303 AC005532.1--C1GALT1 BS_3F4FQJMR ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3F4FQJMR ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3F4FQJMR ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:199070153 2:198579708 AC020718.1--AC019330.1 BS_3F4FQJMR ARRIBA other 8 6 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +2:199071420 2:198579708 AC020718.1--AC019330.1 BS_3F4FQJMR ARRIBA other 6 1 low [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +2:199071420 2:198579708 AC020718.1--AC019330.1 BS_3F4FQJMR STARFUSION other 6 2 NA [INTRACHROMOSOMAL[chr2:0.11Mb]] AC020718.1 NA AC019330.1 NA NA NA NA NA NA +2:199070619 2:198579708 AC020718.1--AC019330.1 BS_3F4FQJMR STARFUSION other 5 2 NA [INTRACHROMOSOMAL[chr2:0.11Mb]] AC020718.1 NA AC019330.1 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_3F4FQJMR ARRIBA other 14 5 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +4:16426440 4:16256257 AC097515.1--TAPT1-AS1 BS_3F4FQJMR ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16238771 AC097515.1--TAPT1-AS1 BS_3F4FQJMR ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16320065 AC097515.1--TAPT1-AS1 BS_3F4FQJMR ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16400533 4:16320065 AC097515.1--TAPT1-AS1 BS_3F4FQJMR ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_3F4FQJMR ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_3F4FQJMR ARRIBA in-frame 32 4 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +20:46492682 20:46512140 AL031686.1--ZNF334 BS_3F4FQJMR ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_3F4FQJMR ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +6:44376473 6:44352726 AL353588.1--AL353588.1 BS_3F4FQJMR ARRIBA other 36 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing AL353588.1 NA AL353588.1 NA NA NA NA NA NA +6:19301943 6:19325798 AL357052.1--AL022068.1 BS_3F4FQJMR ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr6:0.00Mb],LOCAL_REARRANGEMENT:-:[3967]],duplication AL357052.1 NA AL022068.1 NA NA NA NA NA NA +6:157148951 6:143942663 ARID1B--PLAGL1 BS_3F4FQJMR ARRIBA in-frame 6 6 high [INTRACHROMOSOMAL[chr6:12.71Mb]],inversion ARID1B NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +6:157148981 6:143942663 ARID1B--PLAGL1 BS_3F4FQJMR ARRIBA in-frame 4 6 high [INTRACHROMOSOMAL[chr6:12.71Mb]],inversion ARID1B NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +6:157148951 6:143942663 ARID1B--PLAGL1 BS_3F4FQJMR STARFUSION in-frame 6 6 NA [INTRACHROMOSOMAL[chr6:12.71Mb]] ARID1B NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +6:157148981 6:143942663 ARID1B--PLAGL1 BS_3F4FQJMR STARFUSION other 4 6 NA [INTRACHROMOSOMAL[chr6:12.71Mb]] ARID1B NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +6:157036876 6:163455279 ARID1B--QKI BS_3F4FQJMR ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr6:6.20Mb]],deletion ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA +6:156829421 6:163455279 ARID1B--QKI BS_3F4FQJMR ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr6:6.20Mb]],deletion ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA +6:34696446 6:112731935 C6orf106--AL358942.1(114055)/AL360085.1(94004) BS_3F4FQJMR ARRIBA frameshift 4 1 high [],duplication C6orf106 NA AL358942.1 AL360085.1 NA NA NA NA NA +X:36205110 X:36179345 CFAP47--CFAP47 BS_3F4FQJMR ARRIBA frameshift 28 6 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +6:116399662 6:141323925 DSE--AL357080.1(303899)/AL355596.1(123086) BS_3F4FQJMR ARRIBA frameshift 6 4 medium [],deletion DSE NA AL357080.1 AL355596.1 NA NA NA NA NA +6:116399662 6:141446009 DSE--AL357080.1(425983)/AL355596.1(1002) BS_3F4FQJMR ARRIBA frameshift 15 1 medium [],deletion DSE NA AL357080.1 AL355596.1 NA NA NA NA NA +6:131063155 6:134085795 EPB41L2--SLC2A12(33159)/HMGA1P7(29440) BS_3F4FQJMR ARRIBA other 4 0 medium [],inversion EPB41L2 NA SLC2A12 HMGA1P7 NA NA NA NA NA +6:111780566 6:34654779 FYN--C6orf106 BS_3F4FQJMR ARRIBA other 16 2 high [INTRACHROMOSOMAL[chr6:76.96Mb]],deletion FYN NA C6orf106 NA Kinase, Oncogene, Kinase NA NA NA NA +6:111780566 6:34654779 FYN--C6orf106 BS_3F4FQJMR STARFUSION other 18 2 NA [INTRACHROMOSOMAL[chr6:76.96Mb]] FYN NA C6orf106 NA Kinase, Oncogene, Kinase NA NA NA NA +6:39540003 6:116463283 KIF6--FAM26F BS_3F4FQJMR ARRIBA frameshift 10 3 high [INTRACHROMOSOMAL[chr6:76.74Mb]],inversion KIF6 NA FAM26F NA NA NA NA NA NA +6:39540003 6:116463283 KIF6--FAM26F BS_3F4FQJMR STARFUSION frameshift 10 3 NA [INTRACHROMOSOMAL[chr6:76.74Mb]] KIF6 NA FAM26F NA NA NA NA NA NA +5:3418771 5:3576845 LINC01019--LINC01019(40751)/IRX1(19209) BS_3F4FQJMR ARRIBA other 2 1 medium [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA +6:136592173 6:132557116 MAP3K5--TAAR8(3395)/TAAR7P(1908) BS_3F4FQJMR ARRIBA frameshift 2 0 medium [],deletion MAP3K5 NA TAAR8 TAAR7P Kinase, Kinase NA NA NA NA +6:135196238 6:164496779 MYB--AL358972.1(148135)/AL450345.1(330971) BS_3F4FQJMR ARRIBA other 3 1 medium [],deletion MYB NA AL358972.1 AL450345.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +12:96909895 12:96870504 NEDD1--CFAP54 BS_3F4FQJMR STARFUSION other 10 2 NA [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]] NEDD1 NA CFAP54 NA NA NA NA NA NA +6:138571710 6:132883938 NHSL1--HMGB1P13(15079)/AL137783.1(7986) BS_3F4FQJMR ARRIBA frameshift 3 0 high [],inversion NHSL1 NA HMGB1P13 AL137783.1 NA NA NA NA NA +6:163455421 6:156829227 QKI--ARID1B BS_3F4FQJMR ARRIBA in-frame 23 2 high [INTRACHROMOSOMAL[chr6:6.20Mb]],duplication QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA +6:163457551 6:156829227 QKI--ARID1B BS_3F4FQJMR ARRIBA other 4 2 high [INTRACHROMOSOMAL[chr6:6.20Mb]],duplication QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA +6:163455421 6:156829227 QKI--ARID1B BS_3F4FQJMR STARFUSION in-frame 29 2 NA [INTRACHROMOSOMAL[chr6:6.20Mb]] QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA +6:141580077 6:123571132 RN7SKP106(93665)/RPS3AP23(55573)--TRDN BS_3F4FQJMR ARRIBA other 5 0 high [],inversion RN7SKP106 RPS3AP23 TRDN NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--METTL12 BS_3F4FQJMR STARFUSION other 12 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--SNORA57 BS_3F4FQJMR STARFUSION other 12 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +12:112651827 12:112646223 RPH3A--RPH3A BS_3F4FQJMR ARRIBA other 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr12:0.33Mb]],duplication RPH3A NA RPH3A NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3F4FQJMR ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:134052378 6:130963035 SLC2A12--EPB41L2 BS_3F4FQJMR ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr6:2.93Mb]],inversion/5'-5' SLC2A12 NA EPB41L2 NA NA NA NA NA NA +6:132546702 6:136622981 TAAR9(7366)/TAAR8(5991)--MAP3K5 BS_3F4FQJMR ARRIBA other 4 0 high [],duplication TAAR9 TAAR8 MAP3K5 NA NA Kinase, Kinase NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_3F4FQJMR ARRIBA other 4 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3F5PR9GS ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3F5PR9GS ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_3F5PR9GS ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_3F5PR9GS ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_3F5PR9GS ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3F5PR9GS ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3G3KWY18 ARRIBA other 65 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3G3KWY18 ARRIBA other 65 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:7656768 14:49862815 ATP1B2--RN7SL2 BS_3G3KWY18 STARFUSION other 9 10 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +9:22127402 9:22112320 CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_3G3KWY18 ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +9:35657773 6:52995644 RMRP--7SK BS_3G3KWY18 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr9--chr1]] RMRP NA 7SK NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3G3KWY18 ARRIBA other 65 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:93524042 14:93467671 UNC79--UNC79 BS_3G3KWY18 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.37Mb]],duplication/non-canonical_splicing UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3H71BH6Q ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3H71BH6Q ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:77602491 3:77564954 ROBO2--ROBO2 BS_3H71BH6Q ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3H71BH6Q ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:147541674 1:151327687 BCL9--PI4KB BS_3J85TTZM ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr1:3.67Mb]],inversion BCL9 NA PI4KB NA CosmicCensus, Oncogene Kinase NA NA NA +1:147541674 1:151316509 BCL9--PI4KB BS_3J85TTZM ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr1:3.67Mb]],inversion BCL9 NA PI4KB NA CosmicCensus, Oncogene Kinase NA NA NA +1:147541674 1:151307801 BCL9--PI4KB BS_3J85TTZM ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:3.67Mb]],inversion BCL9 NA PI4KB NA CosmicCensus, Oncogene Kinase NA NA NA +20:33490301 22:46912074 CBFA2T2--TBC1D22A BS_3J85TTZM ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr20--chr22]],translocation CBFA2T2 NA TBC1D22A NA NA NA NA NA NA +4:54048955 4:55284666 CHIC2--AC021220.1(64693)/RNU6-746P(9824) BS_3J85TTZM ARRIBA frameshift 6 0 high [],inversion CHIC2 NA AC021220.1 RNU6-746P CosmicCensus, Oncogene NA NA NA NA +11:34685397 11:33286413 EHF(24340)/AC087783.2(24203)--HIPK3 BS_3J85TTZM ARRIBA other 2 0 low [],duplication EHF AC087783.2 HIPK3 NA TumorSuppressorGene, TranscriptionFactor Kinase, Kinase NA NA NA +1:88887261 17:44936358 GTF2B--KIF18B BS_3J85TTZM ARRIBA in-frame 3 0 high [INTERCHROMOSOMAL[chr1--chr17]],translocation GTF2B NA KIF18B NA TranscriptionFactor NA NA NA NA +11:33328633 11:34685231 HIPK3--EHF(24174)/AC087783.2(24369) BS_3J85TTZM ARRIBA frameshift 11 0 high [],deletion HIPK3 NA EHF AC087783.2 Kinase, Kinase TumorSuppressorGene, TranscriptionFactor NA NA NA +2:197805339 2:204527505 PLCL1--AC016903.2(19833)/PARD3B(18288) BS_3J85TTZM ARRIBA frameshift 2 0 high [],inversion PLCL1 NA AC016903.2 PARD3B Oncogene NA NA NA NA +1:160400869 17:11555740 VANGL2--SHISA6 BS_3J85TTZM ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr1--chr17]],translocation VANGL2 NA SHISA6 NA NA NA NA NA NA +1:160400869 17:11551896 VANGL2--SHISA6 BS_3J85TTZM ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr1--chr17]],translocation VANGL2 NA SHISA6 NA NA NA NA NA NA +10:17229391 14:49586588 VIM-AS1--AL139099.5 BS_3J85TTZM STARFUSION other 12 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA AL139099.5 NA NA NA NA NA NA +10:17229391 14:49586588 VIM-AS1--RN7SL1 BS_3J85TTZM STARFUSION other 12 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3KASVCSQ ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3KASVCSQ ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4929717 10:4830675 AKR1C6P--AKR1E2 BS_3KASVCSQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +22:32273507 22:32268288 AL008723.1--SLC5A4-AS1 BS_3KASVCSQ STARFUSION other 12 1 NA [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]] AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_3KASVCSQ ARRIBA in-frame 18 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:34091883 6:34133859 GRM4--GRM4 BS_3KASVCSQ ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_3KASVCSQ ARRIBA in-frame 38 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3KASVCSQ ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_3KASVCSQ ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +6:52995877 14:49862643 7SK--RN7SL2 BS_3MS8WVNR STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3MS8WVNR ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3MS8WVNR ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_3MS8WVNR ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_3MS8WVNR ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_3MS8WVNR ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211103496 1:211107377 AL590132.1--KCNH1 BS_3MS8WVNR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_3MS8WVNR ARRIBA frameshift 10 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_3MS8WVNR ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_3MS8WVNR ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +17:71185596 17:70779229 CASC17--AC007423.1 BS_3MS8WVNR ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr17:0.32Mb]],deletion CASC17 NA AC007423.1 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_3MS8WVNR ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_3MS8WVNR ARRIBA frameshift 69 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +8:1633046 8:1626740 DLGAP2--DLGAP2 BS_3MS8WVNR ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.97Mb]],duplication/non-canonical_splicing DLGAP2 NA DLGAP2 NA NA NA NA NA NA +2:115525972 2:115309239 DPP10--DPP10 BS_3MS8WVNR ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:1.40Mb]],duplication/non-canonical_splicing DPP10 NA DPP10 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_3MS8WVNR ARRIBA in-frame 20 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:74492266 1:74439490 FPGT-TNNI3K--FPGT-TNNI3K BS_3MS8WVNR ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_3MS8WVNR ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +4:6078939 4:6081755 JAKMIP1--JAKMIP1 BS_3MS8WVNR ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.17Mb]],duplication/non-canonical_splicing JAKMIP1 NA JAKMIP1 NA Oncogene Oncogene NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_3MS8WVNR ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_3MS8WVNR ARRIBA frameshift 10 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_3MS8WVNR ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_3MS8WVNR ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_3MS8WVNR ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_3MS8WVNR ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211103496 1:211107377 KCNH1--AL590132.1 BS_3MS8WVNR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_3MS8WVNR ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +1:219218712 1:219211492 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_3MS8WVNR ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +8:74612940 8:74500513 MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_3MS8WVNR ARRIBA other 3 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_3MS8WVNR ARRIBA other 4 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +6:165379194 6:165388453 PDE10A--PDE10A BS_3MS8WVNR ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_3MS8WVNR ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +17:65210605 17:65189286 RGS9--RGS9 BS_3MS8WVNR ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing RGS9 NA RGS9 NA NA NA NA NA NA +14:49862560 6:52995636 RN7SL2--RN7SK BS_3MS8WVNR STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL2 NA RN7SK NA NA NA NA NA NA +3:196784978 17:19190230 RNU6-42P--AC007952.4 BS_3MS8WVNR ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr3--chr17]],translocation RNU6-42P NA AC007952.4 NA NA NA NA NA NA +3:196784978 17:19190230 RNU6-42P--SNORD3C BS_3MS8WVNR ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr3--chr17]],translocation RNU6-42P NA SNORD3C NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3MS8WVNR ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +15:84716025 15:97119168 SEC11A--RN7SKP181(276784)/AC020704.1(153009) BS_3MS8WVNR ARRIBA frameshift 6 0 high [],duplication SEC11A NA RN7SKP181 AC020704.1 NA NA NA NA NA +15:84716025 15:97173867 SEC11A--RN7SKP181(331483)/AC020704.1(98310) BS_3MS8WVNR ARRIBA frameshift 2 0 medium [],duplication SEC11A NA RN7SKP181 AC020704.1 NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_3MS8WVNR ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +5:76209887 5:76194919 SV2C--SV2C BS_3MS8WVNR ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.27Mb]],duplication/non-canonical_splicing SV2C NA SV2C NA NA NA NA NA NA +15:70094532 15:94030401 TLE3--LINC01579 BS_3MS8WVNR ARRIBA frameshift 6 4 high [INTRACHROMOSOMAL[chr15:23.62Mb]],duplication TLE3 NA LINC01579 NA NA NA NA NA NA +15:70094532 15:94066879 TLE3--LINC01579 BS_3MS8WVNR ARRIBA frameshift 2 4 high [INTRACHROMOSOMAL[chr15:23.62Mb]],duplication TLE3 NA LINC01579 NA NA NA NA NA NA +15:70094532 15:93867044 TLE3--LINC01579 BS_3MS8WVNR ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr15:23.62Mb]],duplication TLE3 NA LINC01579 NA NA NA NA NA NA +15:84784895 15:95610011 ZNF592--LINC00924(102164)/AC015574.1(28335) BS_3MS8WVNR ARRIBA frameshift 14 1 high [],deletion ZNF592 NA LINC00924 AC015574.1 TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3MYEMXPQ ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3MYEMXPQ ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:38462233 9:38456118 AL390726.6--AL390726.6 BS_3MYEMXPQ ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing AL390726.6 NA AL390726.6 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_3MYEMXPQ ARRIBA other 3 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +6:65490594 6:65495993 EYS--EYS BS_3MYEMXPQ ARRIBA frameshift 5 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_3MYEMXPQ ARRIBA frameshift 26 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_3MYEMXPQ ARRIBA frameshift 25 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +14:59475869 14:59565275 L3HYPDH--CCDC175 BS_3MYEMXPQ ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59551436 L3HYPDH--CCDC175 BS_3MYEMXPQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +2:99181249 2:99142285 MRPL30--C2orf15 BS_3MYEMXPQ ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr2:0.03Mb],LOCAL_REARRANGEMENT:+:[29592]],duplication MRPL30 NA C2orf15 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_3MYEMXPQ ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3MYEMXPQ ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_3MYEMXPQ ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3NNQ6PSB ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3NNQ6PSB ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +18:79307234 18:79193183 ATP9B--ATP9B BS_3NNQ6PSB ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_3NNQ6PSB ARRIBA frameshift 27 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3NNQ6PSB ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3NWQXPQV ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3NWQXPQV ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:65619153 7:65610654 AC104057.1--AC114501.2(55910)/AC104057.1(6423) BS_3NWQXPQV ARRIBA other 22 0 medium [],duplication AC104057.1 NA AC114501.2 AC104057.1 NA NA NA NA NA +5:65260600 5:65552549 ADAMTS6--CENPK BS_3NWQXPQV ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[35846]],duplication ADAMTS6 NA CENPK NA NA NA NA NA NA +5:65451475 5:65554946 ADAMTS6--CENPK BS_3NWQXPQV ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[35846]],duplication ADAMTS6 NA CENPK NA NA NA NA NA NA +5:65451475 5:65554898 ADAMTS6--CENPK BS_3NWQXPQV ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[35846]],duplication ADAMTS6 NA CENPK NA NA NA NA NA NA +5:65451475 5:65552549 ADAMTS6--CENPK BS_3NWQXPQV ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[35846]],duplication ADAMTS6 NA CENPK NA NA NA NA NA NA +5:65451475 5:65542848 ADAMTS6--CENPK BS_3NWQXPQV ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[35846]],duplication ADAMTS6 NA CENPK NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_3NWQXPQV ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_3NWQXPQV ARRIBA other 8 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +2:143624267 2:142927659 ARHGAP15--KYNU BS_3NWQXPQV ARRIBA frameshift 3 0 high [ChimerSeq,CCLE,INTRACHROMOSOMAL[chr2:0.04Mb],LOCAL_REARRANGEMENT:+:[35530]],duplication ARHGAP15 NA KYNU NA NA NA NA NA TCGAFusion +10:123162828 10:123361319 BUB3--AL160290.2 BS_3NWQXPQV STARFUSION other 12 2 NA [INTRACHROMOSOMAL[chr10:0.19Mb]] BUB3 NA AL160290.2 NA NA NA NA NA NA +9:100585927 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_3NWQXPQV ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_3NWQXPQV ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100572518 CAVIN4--TMEFF1 BS_3NWQXPQV ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_3NWQXPQV ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_3NWQXPQV ARRIBA in-frame 7 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_3NWQXPQV ARRIBA frameshift 10 2 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +7:127242695 7:127243515 GRM8--GRM8 BS_3NWQXPQV ARRIBA frameshift 31 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +7:65781412 7:65768141 GTF2IP5--AC073107.2 BS_3NWQXPQV ARRIBA other 19 3 high [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[5314]],duplication GTF2IP5 NA AC073107.2 NA NA NA NA NA NA +7:65781412 7:65768141 GTF2IP5--AC073107.2 BS_3NWQXPQV STARFUSION other 19 0 NA [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[5314]] GTF2IP5 NA AC073107.2 NA NA NA NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_3NWQXPQV ARRIBA frameshift 37 6 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +4:160591224 4:160586246 LINC02477(4407)/RPS14P7(227198)--LINC02477 BS_3NWQXPQV ARRIBA other 9 0 high [],duplication LINC02477 RPS14P7 LINC02477 NA NA NA NA NA NA +8:84184424 8:83979925 RALYL--AC015522.1 BS_3NWQXPQV ARRIBA other 3 1 low [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:+:[42504]],duplication RALYL NA AC015522.1 NA NA NA NA NA NA +8:84185014 8:84084149 RALYL--AC015522.1 BS_3NWQXPQV ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:+:[42504]],duplication RALYL NA AC015522.1 NA NA NA NA NA NA +8:84184424 8:84084149 RALYL--AC015522.1 BS_3NWQXPQV ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:+:[42504]],duplication RALYL NA AC015522.1 NA NA NA NA NA NA +1:205114789 1:206039054 RBBP5--C1orf186 BS_3NWQXPQV ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.92Mb]],duplication/5'-5' RBBP5 NA C1orf186 NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3NWQXPQV ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_3NWQXPQV ARRIBA frameshift 15 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:114947320 1:114923449 SYCP1--SYCP1 BS_3NWQXPQV ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_3NWQXPQV ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +12:125186866 12:103987050 TMEM132B--TDG BS_3NWQXPQV ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA +1:216321883 1:216327654 USH2A--USH2A BS_3NWQXPQV ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +4:176151967 4:176128738 WDR17--WDR17 BS_3NWQXPQV ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing WDR17 NA WDR17 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3P20Q2C3 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3P20Q2C3 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:139368484 2:139323923 AC062021.1--AHCYP4(421176)/AC062021.1(42242) BS_3P20Q2C3 ARRIBA other 3 2 medium [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA +3:195958926 3:195960086 AC124944.3(4441)/SDHAP1(822)--SDHAP1 BS_3P20Q2C3 ARRIBA other 1 1 low [],duplication AC124944.3 SDHAP1 SDHAP1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_3P20Q2C3 ARRIBA other 13 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_3P20Q2C3 ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_3P20Q2C3 ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_3P20Q2C3 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_3P20Q2C3 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_3P20Q2C3 ARRIBA frameshift 8 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_3P20Q2C3 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919642 1:211019258 AL590132.1--KCNH1 BS_3P20Q2C3 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_3P20Q2C3 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +8:1933942 8:1880048 ARHGEF10--ARHGEF10 BS_3P20Q2C3 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.13Mb]],duplication/non-canonical_splicing ARHGEF10 NA ARHGEF10 NA CosmicCensus CosmicCensus NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_3P20Q2C3 ARRIBA in-frame 13 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_3P20Q2C3 ARRIBA frameshift 11 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +9:23762006 9:23765099 ELAVL2--ELAVL2 BS_3P20Q2C3 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_3P20Q2C3 ARRIBA in-frame 45 9 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_3P20Q2C3 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:114469299 6:114371592 HDAC2-AS2--HDAC2-AS2 BS_3P20Q2C3 ARRIBA other 3 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_3P20Q2C3 ARRIBA other 15 2 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_3P20Q2C3 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_3P20Q2C3 ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_3P20Q2C3 ARRIBA frameshift 8 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_3P20Q2C3 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_3P20Q2C3 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_3P20Q2C3 ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_3P20Q2C3 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_3P20Q2C3 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919642 1:211019258 KCNH1--AL590132.1 BS_3P20Q2C3 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_3P20Q2C3 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +8:17341363 8:17373240 MTMR7--MTMR7 BS_3P20Q2C3 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA +4:118143684 4:118053756 NDST3--NDST3 BS_3P20Q2C3 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing NDST3 NA NDST3 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_3P20Q2C3 ARRIBA other 13 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +1:101806076 1:101837025 OLFM3--OLFM3 BS_3P20Q2C3 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.19Mb]],duplication/non-canonical_splicing OLFM3 NA OLFM3 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_3P20Q2C3 ARRIBA in-frame 16 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_3P20Q2C3 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3P20Q2C3 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_3P20Q2C3 ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3PYESPHA ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3PYESPHA ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +6:133456534 6:133507321 AL024497.2--TARID BS_3PYESPHA ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr6:0.05Mb],LOCAL_REARRANGEMENT:-:[45647]],duplication AL024497.2 NA TARID NA NA NA NA NA NA +13:19283200 13:19317057 AL139327.2(19327)/ANKRD26P3(7393)--ANKRD26P3 BS_3PYESPHA ARRIBA other 3 0 medium [],duplication AL139327.2 ANKRD26P3 ANKRD26P3 NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_3PYESPHA ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_3PYESPHA ARRIBA in-frame 16 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3PYESPHA ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3Q0GTSYH ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3Q0GTSYH ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_3Q0GTSYH STARFUSION other 14 5 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_3Q0GTSYH ARRIBA in-frame 4 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_3Q0GTSYH ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:9189560 7:8751008 AC004852.2--NXPH1 BS_3T6X4BPC ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:0.33Mb]],inversion AC004852.2 NA NXPH1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_3T6X4BPC ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_3T6X4BPC ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +9:119208719 9:119214155 BRINP1--BRINP1 BS_3T6X4BPC ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_3T6X4BPC ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_3T6X4BPC ARRIBA in-frame 21 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:38413918 8:38836162 FGFR1--TACC1 BS_3T6X4BPC ARRIBA in-frame 32 4 high [ChimerSeq,ChimerKB,Cosmic,INTRACHROMOSOMAL[chr8:0.26Mb]],inversion FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA +8:38413918 8:38836162 FGFR1--TACC1 BS_3T6X4BPC STARFUSION in-frame 35 7 NA [ChimerSeq,ChimerKB,Cosmic,INTRACHROMOSOMAL[chr8:0.26Mb]] FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_3T6X4BPC ARRIBA other 6 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_3T6X4BPC ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_3T6X4BPC ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +X:12065575 X:12498680 Y_RNA(10649)/FRMPD4(72891)--FRMPD4 BS_3T6X4BPC ARRIBA other 2 0 medium [],deletion Y_RNA FRMPD4 FRMPD4 NA NA NA NA NA NA +14:49586758 6:52995787 AL139099.5--RN7SK BS_3TQSE8HF STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr14--chr6]] AL139099.5 NA RN7SK NA NA NA NA NA NA +18:24468951 18:24437955 HRH4--IMPACT BS_3TQSE8HF ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr18:0.01Mb],LOCAL_REARRANGEMENT:+:[7094]],duplication HRH4 NA IMPACT NA NA NA NA NA NA +5:87247367 5:87137454 LINC01949(7222)/RASA1(20521)--AC109492.1 BS_3TQSE8HF ARRIBA other 6 0 high [],duplication LINC01949 RASA1 AC109492.1 NA NA NA Oncogene NA NA +13:19730239 13:19851448 PSPC1--ZMYM5 BS_3TQSE8HF ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_3TQSE8HF ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_3TQSE8HF ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +14:49586759 6:52995787 RN7SL1--7SK BS_3TQSE8HF STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +7:66896649 7:66882893 RNU6-1254P(5358)/AC073335.2(6208)--GTF2IP23 BS_3TQSE8HF ARRIBA other 1 0 low [],duplication RNU6-1254P AC073335.2 GTF2IP23 NA NA NA NA NA NA +6:130288227 6:130313093 SAMD3--SAMD3 BS_3TQSE8HF ARRIBA other 6 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3V3KE3VT ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3V3KE3VT ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3V3KE3VT ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995910 14:49862664 7SK--RN7SL2 BS_3W07B2TG STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995921 14:49862667 7SK--RN7SL2 BS_3W07B2TG STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3W07B2TG ARRIBA other 46 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3W07B2TG ARRIBA other 46 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_3W07B2TG ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +11:62532602 11:10786294 AHNAK--AC116535.2 BS_3W07B2TG ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr11:51.63Mb]],deletion/5'-5' AHNAK NA AC116535.2 NA TumorSuppressorGene NA NA NA NA +20:46485529 20:46504740 AL031686.1--ZNF334 BS_3W07B2TG ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +17:7656768 14:49862815 ATP1B2--RN7SL2 BS_3W07B2TG STARFUSION other 15 8 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +9:119208719 9:119214155 BRINP1--BRINP1 BS_3W07B2TG ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +18:61507560 18:61500383 CDH20--CDH20 BS_3W07B2TG ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.22Mb]],duplication/non-canonical_splicing CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA +4:57040824 4:5498945 IGFBP7--STK32B BS_3W07B2TG ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr4:51.53Mb]],inversion IGFBP7 NA STK32B NA TumorSuppressorGene, Oncogene Kinase NA NA NA +11:46867979 11:63736359 LRP4--RTN3 BS_3W07B2TG ARRIBA frameshift 24 6 high [INTRACHROMOSOMAL[chr11:16.76Mb]],duplication/5'-5' LRP4 NA RTN3 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_3W07B2TG ARRIBA in-frame 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +11:63839560 11:8464822 MARK2--STK33 BS_3W07B2TG ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr11:55.24Mb]],inversion MARK2 NA STK33 NA Kinase, Kinase Kinase, Kinase NA NA NA +11:28110401 11:8914826 METTL15--AKIP1 BS_3W07B2TG ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr11:19.19Mb]],duplication METTL15 NA AKIP1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3W07B2TG ARRIBA other 46 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:35418950 11:29804491 SLC1A2--AC107973.1 BS_3W07B2TG ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr11:5.37Mb]],inversion SLC1A2 NA AC107973.1 NA NA NA NA NA NA +22:40829626 6:117321394 ST13--ROS1 BS_3W07B2TG ARRIBA in-frame 10 1 high [INTERCHROMOSOMAL[chr22--chr6]],translocation ST13 NA ROS1 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA +6:52995913 14:49586762 7SK--AL139099.5 BS_3X9WMZGJ STARFUSION other 8 8 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL139099.5 NA NA NA NA NA NA +6:52995913 14:49586762 7SK--RN7SL1 BS_3X9WMZGJ STARFUSION other 8 8 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL1 NA NA NA NA NA NA +12:21815763 12:21894174 ABCC9--ABCC9 BS_3X9WMZGJ ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing ABCC9 NA ABCC9 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3X9WMZGJ ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3X9WMZGJ ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_3X9WMZGJ ARRIBA in-frame 15 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +14:49586855 6:52995629 AL139099.5--7SK BS_3X9WMZGJ STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +14:49586758 6:52995791 AL139099.5--7SK BS_3X9WMZGJ STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +10:132892333 10:132916682 CFAP46--CFAP46 BS_3X9WMZGJ ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/non-canonical_splicing CFAP46 NA CFAP46 NA NA NA NA NA NA +14:88712271 14:88754671 EML5--EML5 BS_3X9WMZGJ ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.18Mb]],duplication/non-canonical_splicing EML5 NA EML5 NA NA NA NA NA NA +6:118813102 6:118856545 MCM9--MCM9 BS_3X9WMZGJ ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_3X9WMZGJ ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +12:96912817 12:96764151 NEDD1--CFAP54 BS_3X9WMZGJ ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96912817 12:96875118 NEDD1--CFAP54 BS_3X9WMZGJ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_3X9WMZGJ ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +3:196782833 3:196716858 PAK2--PIGX BS_3X9WMZGJ ARRIBA in-frame 1 1 low [CCLE,INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:+:[3850]],duplication PAK2 NA PIGX NA Kinase, Kinase NA NA NA NA +14:49586858 6:52995628 RN7SL1--7SK BS_3X9WMZGJ STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +14:49586758 6:52995791 RN7SL1--7SK BS_3X9WMZGJ STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3X9WMZGJ ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:35763702 5:35739919 SPEF2--SPEF2 BS_3X9WMZGJ ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.20Mb]],duplication/non-canonical_splicing SPEF2 NA SPEF2 NA NA NA NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_3X9WMZGJ ARRIBA other 5 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +8:93822563 8:93780593 TMEM67(3329)/AC084346.1(11891)--TMEM67 BS_3X9WMZGJ ARRIBA other 1 2 high [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_3XY76V8T ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_3XY76V8T ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +12:96792499 12:96647875 CFAP54--CFAP54 BS_3XY76V8T ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.39Mb]],duplication/non-canonical_splicing CFAP54 NA CFAP54 NA NA NA NA NA NA +17:7945986 9:87759550 CNTROB--AL160279.1(17597)/CTSL3P(12903) BS_3XY76V8T ARRIBA frameshift 3 0 medium [],translocation CNTROB NA AL160279.1 CTSL3P NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_3XY76V8T ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_3XY76V8T ARRIBA in-frame 13 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_3XY76V8T ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +3:47869212 2:240769660 MAP4--KIF1A BS_3XY76V8T ARRIBA frameshift 1 3 medium [INTERCHROMOSOMAL[chr3--chr2]],translocation MAP4 NA KIF1A NA Oncogene NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_3XY76V8T ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +9:35657837 14:49586591 RMRP--AL139099.5 BS_3XY76V8T STARFUSION other 42 21 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL139099.5 NA Oncogene NA NA NA NA +9:35657837 14:49586591 RMRP--RN7SL1 BS_3XY76V8T STARFUSION other 42 21 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL1 NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_3XY76V8T ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_3XY76V8T ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +21:14825522 21:15043573 AF127577.4--NRIP1 BS_3Y0QXZQB ARRIBA other 1 1 medium [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA +21:15014344 21:15043574 AF127577.4--NRIP1 BS_3Y0QXZQB ARRIBA other 1 1 medium [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA +9:21838010 1:104706524 MTAP--AC092506.1(479846)/CDK4P1(727470) BS_3Y0QXZQB ARRIBA frameshift 2 0 high [],translocation MTAP NA AC092506.1 CDK4P1 TumorSuppressorGene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_401R3KV0 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_401R3KV0 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:15515428 7:43648652 AC140504.1--COA1 BS_401R3KV0 STARFUSION other 12 5 NA [INTERCHROMOSOMAL[chr16--chr7]] AC140504.1 NA COA1 NA NA NA NA NA NA +20:53966906 3:12600415 BCAS1--RAF1 BS_401R3KV0 ARRIBA in-frame 16 3 high [INTERCHROMOSOMAL[chr20--chr3]],translocation BCAS1 NA RAF1 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +20:53966906 3:12600415 BCAS1--RAF1 BS_401R3KV0 STARFUSION in-frame 17 3 NA [INTERCHROMOSOMAL[chr20--chr3]] BCAS1 NA RAF1 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +16:15515428 7:43648652 C16orf45--COA1 BS_401R3KV0 ARRIBA frameshift 19 3 high [INTERCHROMOSOMAL[chr16--chr7]],translocation C16orf45 NA COA1 NA NA NA NA NA NA +16:15515428 7:43648652 C16orf45--COA1 BS_401R3KV0 STARFUSION other 19 6 NA [INTERCHROMOSOMAL[chr16--chr7]] C16orf45 NA COA1 NA NA NA NA NA NA +7:43729429 3:12489784 COA1--TSEN2 BS_401R3KV0 ARRIBA other 15 1 high [INTERCHROMOSOMAL[chr7--chr3]],translocation COA1 NA TSEN2 NA NA NA NA NA NA +7:43665658 3:12489784 COA1--TSEN2 BS_401R3KV0 ARRIBA other 2 2 high [INTERCHROMOSOMAL[chr7--chr3]],translocation COA1 NA TSEN2 NA NA NA NA NA NA +7:43729429 3:12489784 COA1--TSEN2 BS_401R3KV0 STARFUSION other 15 2 NA [INTERCHROMOSOMAL[chr7--chr3]] COA1 NA TSEN2 NA NA NA NA NA NA +16:3879832 20:54643458 CREBBP--DOK5 BS_401R3KV0 ARRIBA frameshift 161 7 high [INTERCHROMOSOMAL[chr16--chr20]],translocation CREBBP NA DOK5 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +16:3879832 20:54643458 CREBBP--DOK5 BS_401R3KV0 STARFUSION frameshift 163 9 NA [INTERCHROMOSOMAL[chr16--chr20]] CREBBP NA DOK5 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +20:36524341 16:8635371 DLGAP4--METTL22 BS_401R3KV0 ARRIBA frameshift 16 0 high [INTERCHROMOSOMAL[chr20--chr16]],translocation/5'-5' DLGAP4 NA METTL22 NA NA NA NA NA NA +7:36985923 16:6490171 ELMO1--RBFOX1 BS_401R3KV0 ARRIBA other 2 2 high [INTERCHROMOSOMAL[chr7--chr16]],translocation/5'-5' ELMO1 NA RBFOX1 NA Oncogene NA NA NA NA +4:17652830 4:17660087 FAM184B--FAM184B BS_401R3KV0 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.15Mb]],duplication/non-canonical_splicing FAM184B NA FAM184B NA NA NA NA NA NA +3:12618515 20:36403224 RAF1--DLGAP4 BS_401R3KV0 ARRIBA frameshift 18 3 high [INTERCHROMOSOMAL[chr3--chr20]],translocation/5'-5' RAF1 NA DLGAP4 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +14:49862560 6:52995739 RN7SL2--7SK BS_401R3KV0 STARFUSION other 4 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862562 6:52995635 RN7SL2--7SK BS_401R3KV0 STARFUSION other 4 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862575 6:52995634 RN7SL2--7SK BS_401R3KV0 STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_401R3KV0 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:18925950 16:4571561 SMG1--C16orf96 BS_401R3KV0 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr16:14.20Mb]],inversion SMG1 NA C16orf96 NA Kinase, Kinase NA NA NA NA +3:12505231 20:53967073 TSEN2--BCAS1 BS_401R3KV0 ARRIBA in-frame 12 1 high [INTERCHROMOSOMAL[chr3--chr20]],translocation TSEN2 NA BCAS1 NA NA NA NA NA NA +3:12505231 20:53953695 TSEN2--BCAS1 BS_401R3KV0 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr3--chr20]],translocation TSEN2 NA BCAS1 NA NA NA NA NA NA +3:12503784 20:53967073 TSEN2--BCAS1 BS_401R3KV0 ARRIBA in-frame 1 1 medium [INTERCHROMOSOMAL[chr3--chr20]],translocation TSEN2 NA BCAS1 NA NA NA NA NA NA +3:12505231 20:53967073 TSEN2--BCAS1 BS_401R3KV0 STARFUSION in-frame 14 1 NA [INTERCHROMOSOMAL[chr3--chr20]] TSEN2 NA BCAS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_40MP5BWR ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_40MP5BWR ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +12:109241281 17:31258344 ACACB--NF1 BS_40MP5BWR ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr12--chr17]],translocation ACACB NA NF1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +7:69599962 11:30931952 AUTS2--DCDC1 BS_40MP5BWR ARRIBA in-frame 24 2 high [INTERCHROMOSOMAL[chr7--chr11]],translocation AUTS2 NA DCDC1 NA NA NA NA NA NA +7:69599962 11:30931952 AUTS2--DCDC1 BS_40MP5BWR STARFUSION in-frame 26 2 NA [INTERCHROMOSOMAL[chr7--chr11]] AUTS2 NA DCDC1 NA NA NA NA NA NA +7:147299597 21:34887096 CNTNAP2--RUNX1 BS_40MP5BWR ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr7--chr21]],translocation/3'-3' CNTNAP2 NA RUNX1 NA TumorSuppressorGene, CosmicCensus TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +1:50475464 8:10483231 FAF1--PRSS51 BS_40MP5BWR ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr1--chr8]],translocation FAF1 NA PRSS51 NA NA NA NA NA NA +17:31253000 12:109245626 NF1--ACACB BS_40MP5BWR ARRIBA in-frame 8 3 high [INTERCHROMOSOMAL[chr17--chr12]],translocation NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +17:31249119 12:109245626 NF1--ACACB BS_40MP5BWR ARRIBA in-frame 2 1 high [INTERCHROMOSOMAL[chr17--chr12]],translocation NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_40MP5BWR ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +21:34799301 7:147396398 RUNX1--CNTNAP2 BS_40MP5BWR ARRIBA frameshift 39 8 high [INTERCHROMOSOMAL[chr21--chr7]],translocation/5'-5' RUNX1 NA CNTNAP2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA +7:149806831 6:30897016 SSPO--DDR1 BS_40MP5BWR ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr7--chr6]],translocation SSPO NA DDR1 NA NA Kinase, Oncogene, Kinase NA NA NA +10:7824560 10:42686016 TAF3--LINC01518 BS_40MP5BWR ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr10:34.66Mb]],inversion TAF3 NA LINC01518 NA NA NA NA NA NA +10:7824560 10:42683460 TAF3--LINC01518 BS_40MP5BWR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:34.66Mb]],inversion TAF3 NA LINC01518 NA NA NA NA NA NA +3:23217312 12:23908207 UBE2E2--SOX5 BS_40MP5BWR ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr3--chr12]],translocation/5'-5' UBE2E2 NA SOX5 NA NA Oncogene, TranscriptionFactor NA NA NA +3:23217312 12:23980748 UBE2E2--SOX5(29716)/MIR920(231673) BS_40MP5BWR ARRIBA frameshift 4 0 high [],translocation UBE2E2 NA SOX5 MIR920 NA Oncogene, TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_42DY6WS7 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_42DY6WS7 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_42DY6WS7 ARRIBA other 10 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_42DY6WS7 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +1:171251523 1:170807604 AL445673.1--PRRX1(68185)/MROH9(127867) BS_42DY6WS7 ARRIBA other 1 2 medium [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_42DY6WS7 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_42DY6WS7 ARRIBA in-frame 5 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_42DY6WS7 ARRIBA frameshift 5 0 medium [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +11:25055087 11:25061990 LUZP2--LUZP2 BS_42DY6WS7 ARRIBA frameshift 4 1 medium [SELFIE,INTRACHROMOSOMAL[chr11:0.59Mb]],inversion/3'-3' LUZP2 NA LUZP2 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_42DY6WS7 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_42DY6WS7 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +9:35657837 14:49586591 RMRP--AL139099.5 BS_42DY6WS7 STARFUSION other 16 14 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL139099.5 NA Oncogene NA NA NA NA +9:35657837 14:49586591 RMRP--RN7SL1 BS_42DY6WS7 STARFUSION other 16 14 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL1 NA Oncogene NA NA NA NA +3:78938601 16:74811086 ROBO1--FA2H(36255)/AC009132.1(31501) BS_42DY6WS7 ARRIBA frameshift 2 0 medium [],translocation ROBO1 NA FA2H AC009132.1 TumorSuppressorGene, Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_42DY6WS7 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_42DY6WS7 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_42Y3YANN ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_42Y3YANN ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:44906802 3:15738585 GFAP--RN7SL4P BS_42Y3YANN STARFUSION other 46 2 NA [INTERCHROMOSOMAL[chr17--chr3]] GFAP NA RN7SL4P NA NA NA NA NA NA +3:178859489 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_42Y3YANN ARRIBA other 2 2 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_42Y3YANN ARRIBA in-frame 6 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138867975 7:140783157 KIAA1549--BRAF BS_42Y3YANN ARRIBA frameshift 1 0 low [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +1:60595538 1:60600250 LINC01748--LINC01748 BS_42Y3YANN ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing LINC01748 NA LINC01748 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_42Y3YANN ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_44A3ES23 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_44A3ES23 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +22:38293255 22:38336706 CSNK1E--Z98749.2 BS_44A3ES23 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr22:0.02Mb],LOCAL_REARRANGEMENT:-:[17678]],duplication CSNK1E NA Z98749.2 NA Kinase NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_44A3ES23 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_44A3ES23 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:35918011 11:36036103 AC090692.1--LDLRAD3 BS_45J79YTF ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr11:0.03Mb],LOCAL_INVERSION:-:+:[25242]],inversion AC090692.1 NA LDLRAD3 NA NA NA NA NA NA +11:35918011 11:36227085 AC090692.1--LDLRAD3 BS_45J79YTF ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.03Mb],LOCAL_INVERSION:-:+:[25242]],inversion AC090692.1 NA LDLRAD3 NA NA NA NA NA NA +19:46937408 19:46918492 ARHGAP35--AP2S1(67500)/ARHGAP35(184) BS_45J79YTF ARRIBA frameshift 1 1 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +7:116700284 7:122010334 MET--PTPRZ1 BS_45J79YTF ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:5.07Mb]],deletion MET NA PTPRZ1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +7:122011309 7:116699071 PTPRZ1--MET BS_45J79YTF ARRIBA in-frame 228 13 high [ChimerPub,FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr7:5.07Mb]],duplication PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:122013889 7:116699071 PTPRZ1--MET BS_45J79YTF ARRIBA in-frame 16 13 high [ChimerPub,FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr7:5.07Mb]],duplication PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:122011309 7:116699071 PTPRZ1--MET BS_45J79YTF STARFUSION in-frame 237 15 NA [ChimerPub,FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr7:5.07Mb]] PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 AC009093.3--ANK2 BS_470DYRJQ ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_470DYRJQ ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:155503021 7:155509097 AC009403.2--AC009403.2 BS_470DYRJQ ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA +4:16426440 4:16238771 AC097515.1--TAPT1-AS1 BS_470DYRJQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16421133 4:16238771 AC097515.1--TAPT1-AS1 BS_470DYRJQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16256257 AC097515.1--TAPT1-AS1 BS_470DYRJQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16288884 AC097515.1--TAPT1-AS1 BS_470DYRJQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +9:38462233 9:38456118 AL390726.6--AL390726.6 BS_470DYRJQ ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing AL390726.6 NA AL390726.6 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_470DYRJQ ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_470DYRJQ ARRIBA other 11 3 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_470DYRJQ ARRIBA in-frame 40 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_470DYRJQ ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +10:12998338 10:13074100 CCDC3--CCDC3 BS_470DYRJQ ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA +18:65824831 18:65809704 CDH7--CDH7 BS_470DYRJQ ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA +16:76449858 16:76448012 CNTNAP4--CNTNAP4 BS_470DYRJQ ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr16:0.28Mb]],duplication/non-canonical_splicing CNTNAP4 NA CNTNAP4 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_470DYRJQ ARRIBA other 50 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +6:83924592 6:83864175 CYB5R4--CYB5R4 BS_470DYRJQ ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_470DYRJQ ARRIBA in-frame 7 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_470DYRJQ ARRIBA frameshift 9 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_470DYRJQ ARRIBA in-frame 19 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_470DYRJQ ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +12:132247910 12:132262625 GALNT9--GALNT9 BS_470DYRJQ ARRIBA frameshift 4 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing GALNT9 NA GALNT9 NA NA NA NA NA NA +14:59456438 14:59551436 GPR135--CCDC175 BS_470DYRJQ ARRIBA other 1 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59538840 GPR135--CCDC175 BS_470DYRJQ ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_470DYRJQ ARRIBA frameshift 42 6 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_470DYRJQ ARRIBA frameshift 33 6 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_470DYRJQ ARRIBA in-frame 41 5 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_470DYRJQ ARRIBA other 2 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_470DYRJQ ARRIBA in-frame 3 1 medium [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +13:69940040 13:69975802 KLHL1--KLHL1 BS_470DYRJQ ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +X:150471490 X:150469745 MAMLD1--MAMLD1 BS_470DYRJQ ARRIBA in-frame 2 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_470DYRJQ ARRIBA other 4 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +8:124555742 8:124558832 MTSS1--MTSS1 BS_470DYRJQ ARRIBA frameshift 22 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +15:76009200 15:76052983 NRG4--NRG4 BS_470DYRJQ ARRIBA frameshift 13 2 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_470DYRJQ ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_470DYRJQ ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:144905091 1:144955601 SRGAP2B--SRGAP2B BS_470DYRJQ ARRIBA frameshift 9 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SRGAP2B NA SRGAP2B NA NA NA NA NA NA +8:52142930 8:52166986 ST18--ST18 BS_470DYRJQ ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_470DYRJQ ARRIBA other 10 1 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_478TN841 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_478TN841 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_478TN841 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_478TN841 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_478TN841 ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_478TN841 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +13:80657039 13:80361601 PWWP2AP1--SPRY2(20650)/RNU6-61P(7825) BS_478TN841 ARRIBA other 1 1 medium [],duplication PWWP2AP1 NA SPRY2 RNU6-61P NA TumorSuppressorGene NA NA NA +14:49862560 6:52995634 RN7SL2--7SK BS_478TN841 STARFUSION other 7 17 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_478TN841 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:22991061 7:92641959 FAM126A--CDK6 BS_479S95Q6 ARRIBA frameshift 23 4 high [INTRACHROMOSOMAL[chr7:69.59Mb]],inversion/5'-5' FAM126A NA CDK6 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +10:122462124 2:159097637 HTRA1--TANC1 BS_479S95Q6 ARRIBA in-frame 42 8 high [INTERCHROMOSOMAL[chr10--chr2]],translocation HTRA1 NA TANC1 NA TumorSuppressorGene, Oncogene NA NA NA NA +10:122462124 2:159097637 HTRA1--TANC1 BS_479S95Q6 STARFUSION in-frame 42 8 NA [INTERCHROMOSOMAL[chr10--chr2]] HTRA1 NA TANC1 NA TumorSuppressorGene, Oncogene NA NA NA NA +8:73422614 8:141759716 STAU2--AC138647.1(240979)/MIR1302-7(26526) BS_479S95Q6 ARRIBA frameshift 5 0 high [],inversion STAU2 NA AC138647.1 MIR1302-7 NA NA NA NA NA +14:70416900 15:101780116 SYNJ2BP--GOLGA8VP BS_479S95Q6 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr14--chr15]],translocation SYNJ2BP NA GOLGA8VP NA NA NA NA NA NA +2:159065971 10:122488902 TANC1--HTRA1 BS_479S95Q6 ARRIBA in-frame 91 12 high [INTERCHROMOSOMAL[chr2--chr10]],translocation TANC1 NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA +2:159065971 10:122488902 TANC1--HTRA1 BS_479S95Q6 STARFUSION in-frame 106 16 NA [INTERCHROMOSOMAL[chr2--chr10]] TANC1 NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA +3:195156449 3:123247160 XXYLT1--SEC22A BS_479S95Q6 ARRIBA frameshift 12 1 high [INTRACHROMOSOMAL[chr3:71.79Mb]],deletion/5'-5' XXYLT1 NA SEC22A NA Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_47SJZ3PH ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_47SJZ3PH ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:22127563 9:22046751 CDKN2B-AS1(6466)/AL157937.1(76427)--CDKN2B-AS1 BS_47SJZ3PH ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +3:178801793 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_47SJZ3PH ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_47SJZ3PH ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_49852ZBH ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_49852ZBH ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:7656768 14:49862815 ATP1B2--RN7SL2 BS_49852ZBH STARFUSION other 9 17 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_49852ZBH ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +2:207817587 12:22046219 FZD5(48024)/PLEKHM3(3701)--CMAS BS_49852ZBH ARRIBA other 3 0 medium [],translocation FZD5 PLEKHM3 CMAS NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_49852ZBH ARRIBA other 9 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +16:71162531 1:148206633 HYDIN--AC239809.3 BS_49852ZBH ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr16--chr1]],translocation HYDIN NA AC239809.3 NA NA NA NA NA NA +7:138861139 7:140781693 KIAA1549--BRAF BS_49852ZBH ARRIBA in-frame 14 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +2:1839149 2:1892287 MYT1L--MYT1L BS_49852ZBH ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_49852ZBH ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +13:19759323 13:19838985 PSPC1--ZMYM5 BS_49852ZBH ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_49852ZBH ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_49852ZBH ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_49852ZBH ARRIBA other 21 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +12:125186866 12:103987050 TMEM132B--TDG BS_49852ZBH ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA +5:99743695 9:33700132 AC008837.2(148398)/AC092284.1(204600)--AL356489.2 BS_49BQS7Z6 ARRIBA other 2 0 medium [],translocation AC008837.2 AC092284.1 AL356489.2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_49BQS7Z6 ARRIBA other 55 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_49BQS7Z6 ARRIBA other 55 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_49BQS7Z6 ARRIBA other 3 0 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +4:138281739 4:138298658 AC093903.1--AC093903.1(16874)/LINC00498(198) BS_49BQS7Z6 ARRIBA other 5 1 medium [],duplication AC093903.1 NA AC093903.1 LINC00498 NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_49BQS7Z6 ARRIBA other 2 2 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93557472 AC110023.1--AC091078.1 BS_49BQS7Z6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93557472 AC110023.1--AC091078.1 BS_49BQS7Z6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +22:41469182 22:40552367 ACO2--MKL1 BS_49BQS7Z6 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion ACO2 NA MKL1 NA NA Oncogene NA NA NA +22:41469182 22:40594735 ACO2--MKL1 BS_49BQS7Z6 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion ACO2 NA MKL1 NA NA Oncogene NA NA NA +22:41469508 22:40594735 ACO2--MKL1 BS_49BQS7Z6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion ACO2 NA MKL1 NA NA Oncogene NA NA NA +20:46474501 20:46506458 AL031686.1--ZNF334 BS_49BQS7Z6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46457675 20:46504740 AL031686.1--ZNF334 BS_49BQS7Z6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_49BQS7Z6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_49BQS7Z6 ARRIBA other 7 1 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +17:56374714 17:56326221 ANKFN1--ANKFN1 BS_49BQS7Z6 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.63Mb]],duplication/non-canonical_splicing ANKFN1 NA ANKFN1 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_49BQS7Z6 ARRIBA other 16 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +22:17655832 22:22195970 BCL2L13--IGL-@ BS_49BQS7Z6 STARFUSION other 55 4 NA [INTRACHROMOSOMAL[chr22:4.30Mb]] BCL2L13 NA IGL-@ NA NA Oncogene NA NA NA +22:17655832 22:22195970 BCL2L13--IGL@ BS_49BQS7Z6 STARFUSION other 55 4 NA [INTRACHROMOSOMAL[chr22:4.30Mb]] BCL2L13 NA IGL@ NA NA Oncogene NA NA NA +22:17655832 22:22195970 BCL2L13--IGLV6-57 BS_49BQS7Z6 ARRIBA in-frame 55 2 high [INTRACHROMOSOMAL[chr22:4.46Mb]],deletion BCL2L13 NA IGLV6-57 NA NA NA NA NA NA +22:17638886 22:22195970 BCL2L13--IGLV6-57 BS_49BQS7Z6 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr22:4.46Mb]],deletion BCL2L13 NA IGLV6-57 NA NA NA NA NA NA +22:17638700 22:22195970 BCL2L13--IGLV6-57 BS_49BQS7Z6 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr22:4.46Mb]],deletion BCL2L13 NA IGLV6-57 NA NA NA NA NA NA +22:17655832 22:22195970 BCL2L13--IGLV6-57 BS_49BQS7Z6 STARFUSION in-frame 55 4 NA [INTRACHROMOSOMAL[chr22:4.46Mb]] BCL2L13 NA IGLV6-57 NA NA NA NA NA NA +9:137957687 9:137952274 CACNA1B--CACNA1B BS_49BQS7Z6 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.25Mb]],duplication/non-canonical_splicing CACNA1B NA CACNA1B NA NA NA NA NA NA +22:17552142 22:20887719 CECR2--SNAP29 BS_49BQS7Z6 ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr22:3.30Mb]],inversion/3'-3' CECR2 NA SNAP29 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_49BQS7Z6 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_49BQS7Z6 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:57357176 3:57363786 DNAH12--DNAH12 BS_49BQS7Z6 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +2:195957261 2:195960945 DNAH7--DNAH7 BS_49BQS7Z6 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA +8:71244603 8:71334174 EYA1--EYA1 BS_49BQS7Z6 ARRIBA frameshift 4 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.16Mb]],duplication/non-canonical_splicing EYA1 NA EYA1 NA NA NA NA NA NA +22:25690283 22:29529239 GRK3--THOC5 BS_49BQS7Z6 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr22:3.78Mb]],inversion GRK3 NA THOC5 NA Kinase Oncogene NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_49BQS7Z6 ARRIBA other 4 0 low [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_49BQS7Z6 ARRIBA other 2 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +22:29145346 22:46357430 KREMEN1--TRMU(90)/CELSR1(3404) BS_49BQS7Z6 ARRIBA other 28 6 medium [],deletion KREMEN1 NA TRMU CELSR1 NA NA NA NA NA +22:33919995 22:38380990 LARGE1--Z98749.2 BS_49BQS7Z6 ARRIBA other 7 2 high [INTRACHROMOSOMAL[chr22:4.41Mb]],duplication LARGE1 NA Z98749.2 NA NA NA NA NA NA +22:33919995 22:38361560 LARGE1--Z98749.2 BS_49BQS7Z6 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr22:4.41Mb]],duplication LARGE1 NA Z98749.2 NA NA NA NA NA NA +22:33919995 22:38380990 LARGE1--Z98749.3 BS_49BQS7Z6 ARRIBA other 7 2 high [INTRACHROMOSOMAL[chr22:4.37Mb]],duplication LARGE1 NA Z98749.3 NA NA NA NA NA NA +22:33919995 22:38361560 LARGE1--Z98749.3 BS_49BQS7Z6 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:4.37Mb]],duplication LARGE1 NA Z98749.3 NA NA NA NA NA NA +2:8201947 2:8245140 LINC00299--LINC00299 BS_49BQS7Z6 ARRIBA other 5 1 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA +12:25503738 12:25549546 LMNTD1--LMNTD1 BS_49BQS7Z6 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +22:40463221 22:41499726 MKL1--ACO2 BS_49BQS7Z6 ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion MKL1 NA ACO2 NA Oncogene NA NA NA NA +22:40463221 22:41507791 MKL1--ACO2 BS_49BQS7Z6 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion MKL1 NA ACO2 NA Oncogene NA NA NA NA +22:40552106 22:41499726 MKL1--ACO2 BS_49BQS7Z6 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion MKL1 NA ACO2 NA Oncogene NA NA NA NA +22:27761050 22:31344642 MN1--PATZ1 BS_49BQS7Z6 ARRIBA other 1 9 medium [CCLE,INTRACHROMOSOMAL[chr22:3.52Mb]],duplication MN1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +22:36335506 22:50083173 MYH9--MLC1 BS_49BQS7Z6 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr22:13.67Mb]],inversion/3'-3' MYH9 NA MLC1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_49BQS7Z6 ARRIBA frameshift 18 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +12:96909895 12:96764069 NEDD1--CFAP54 BS_49BQS7Z6 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +2:100965766 2:100948235 NPAS2--NPAS2 BS_49BQS7Z6 ARRIBA frameshift 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing NPAS2 NA NPAS2 NA TumorSuppressorGene, TranscriptionFactor TumorSuppressorGene, TranscriptionFactor NA NA NA +12:95665810 12:95833084 NTN4--AC090001.1 BS_49BQS7Z6 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:106750793 12:106686884 RFX4--RFX4 BS_49BQS7Z6 ARRIBA frameshift 8 4 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +14:49862559 6:52995798 RN7SL2--7SK BS_49BQS7Z6 STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862575 6:52995740 RN7SL2--7SK BS_49BQS7Z6 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862557 6:52995777 RN7SL2--7SK BS_49BQS7Z6 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862554 6:52995741 RN7SL2--7SK BS_49BQS7Z6 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862557 6:52995787 RN7SL2--7SK BS_49BQS7Z6 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_49BQS7Z6 ARRIBA other 55 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_49BQS7Z6 ARRIBA other 3 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +12:125186866 12:103987050 TMEM132B--TDG BS_49BQS7Z6 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA +22:26590053 22:17552835 TPST2--CECR2 BS_49BQS7Z6 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr22:8.96Mb]],inversion TPST2 NA CECR2 NA NA NA NA NA NA +22:46357155 22:23136749 TRMU--RSPH14 BS_49BQS7Z6 ARRIBA frameshift 43 7 medium [INTRACHROMOSOMAL[chr22:23.19Mb]],duplication/5'-5' TRMU NA RSPH14 NA NA NA NA NA NA +22:43812833 22:37650152 Z97055.2--SH3BP1 BS_49BQS7Z6 ARRIBA other 24 2 high [INTRACHROMOSOMAL[chr22:6.15Mb]],duplication Z97055.2 NA SH3BP1 NA NA NA NA NA NA +22:43812833 22:37650152 Z97055.2--SH3BP1 BS_49BQS7Z6 STARFUSION other 24 2 NA [INTRACHROMOSOMAL[chr22:6.15Mb]] Z97055.2 NA SH3BP1 NA NA NA NA NA NA +14:49586857 14:20343352 AL139099.5--AL355075.4 BS_49F4RAA4 STARFUSION other 5 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586868 14:20343396 AL139099.5--AL355075.4 BS_49F4RAA4 STARFUSION other 5 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586857 14:20343379 AL139099.5--AL355075.4 BS_49F4RAA4 STARFUSION other 5 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586872 14:20343400 AL139099.5--RPPH1 BS_49F4RAA4 STARFUSION other 6 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +14:49586857 14:20343352 AL139099.5--RPPH1 BS_49F4RAA4 STARFUSION other 5 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +14:49586857 14:20343379 AL139099.5--RPPH1 BS_49F4RAA4 STARFUSION other 5 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +7:140787548 7:38350346 BRAF--TRG-AS1 BS_49F4RAA4 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:102.34Mb]],inversion BRAF NA TRG-AS1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +3:152447773 7:140783157 MBNL1--BRAF BS_49F4RAA4 ARRIBA in-frame 18 2 high [INTERCHROMOSOMAL[chr3--chr7]],translocation MBNL1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +3:152445539 7:140783157 MBNL1--BRAF BS_49F4RAA4 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr3--chr7]],translocation MBNL1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +3:152447773 7:140783157 MBNL1--BRAF BS_49F4RAA4 STARFUSION in-frame 20 2 NA [INTERCHROMOSOMAL[chr3--chr7]] MBNL1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +3:152453806 7:38342309 MBNL1--TRG-AS1 BS_49F4RAA4 ARRIBA other 3 0 low [INTERCHROMOSOMAL[chr3--chr7]],translocation MBNL1 NA TRG-AS1 NA NA NA NA NA NA +14:49586854 14:20343356 RN7SL1--AL355075.4 BS_49F4RAA4 STARFUSION other 6 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586857 14:20343379 RN7SL1--AL355075.4 BS_49F4RAA4 STARFUSION other 5 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586857 14:20343352 RN7SL1--RPPH1 BS_49F4RAA4 STARFUSION other 5 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +14:49586868 14:20343397 RN7SL1--RPPH1 BS_49F4RAA4 STARFUSION other 5 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +14:49586857 14:20343379 RN7SL1--RPPH1 BS_49F4RAA4 STARFUSION other 5 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +7:38335472 3:152459271 TRGV7--MBNL1 BS_49F4RAA4 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr7--chr3]],translocation TRGV7 NA MBNL1 NA NA NA NA NA NA +12:4669817 12:29512120 AC005833.3--TMTC1 BS_49FQXT2E ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr12:24.76Mb]],inversion AC005833.3 NA TMTC1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_49FQXT2E ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_49FQXT2E ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:6481555 11:33980240 AC084337.2--LMO2(87951)/CAPRIN1(71443) BS_49FQXT2E ARRIBA frameshift 3 0 medium [],inversion AC084337.2 NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_49FQXT2E ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +11:70398098 20:17481584 AP000487.1--PCSK2 BS_49FQXT2E ARRIBA other 9 0 high [INTERCHROMOSOMAL[chr11--chr20]],translocation AP000487.1 NA PCSK2 NA NA NA NA NA NA +11:81252926 11:78891336 AP003398.1(295292)/MTND4LP18(299300)--TENM4 BS_49FQXT2E ARRIBA other 4 0 medium [],deletion AP003398.1 MTND4LP18 TENM4 NA NA NA NA NA NA +11:1390375 11:32143144 BRSK2--AL078612.2 BS_49FQXT2E ARRIBA frameshift 49 3 high [INTRACHROMOSOMAL[chr11:30.67Mb]],deletion BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA +11:1390375 11:32137121 BRSK2--AL078612.2 BS_49FQXT2E ARRIBA frameshift 9 3 high [INTRACHROMOSOMAL[chr11:30.67Mb]],deletion BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA +11:1390375 11:32143144 BRSK2--AL078612.2 BS_49FQXT2E STARFUSION other 50 3 NA [INTRACHROMOSOMAL[chr11:30.67Mb]] BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA +11:1390375 11:32137121 BRSK2--AL078612.2 BS_49FQXT2E STARFUSION other 9 3 NA [INTRACHROMOSOMAL[chr11:30.67Mb]] BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA +11:1390375 11:32226684 BRSK2--THEM7P BS_49FQXT2E ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr11:30.65Mb]],deletion/5'-5' BRSK2 NA THEM7P NA Kinase, Kinase NA NA NA NA +11:35190065 11:29552360 CD44--AC110058.1 BS_49FQXT2E ARRIBA frameshift 60 7 high [INTRACHROMOSOMAL[chr11:5.59Mb]],duplication CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA +11:35189972 11:29552360 CD44--AC110058.1 BS_49FQXT2E ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr11:5.59Mb]],duplication CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA +11:35190065 11:29552360 CD44--AC110058.1 BS_49FQXT2E STARFUSION other 63 9 NA [INTRACHROMOSOMAL[chr11:5.59Mb]] CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA +11:35190065 11:30112332 CD44--AC124657.1(27989)/AL358944.1(54831) BS_49FQXT2E ARRIBA frameshift 3 0 medium [],duplication CD44 NA AC124657.1 AL358944.1 TumorSuppressorGene, Oncogene NA NA NA NA +11:35190065 11:23412045 CD44--WIZP1(5942)/MIR8054(7060) BS_49FQXT2E ARRIBA frameshift 63 3 high [],inversion CD44 NA WIZP1 MIR8054 TumorSuppressorGene, Oncogene NA NA NA NA +9:21994139 9:26066681 CDKN2A--AL353753.1 BS_49FQXT2E ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:4.07Mb]],inversion CDKN2A NA AL353753.1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +9:21994139 9:25997129 CDKN2A--FAM71BP1(58695)/AL353753.1(69546) BS_49FQXT2E ARRIBA frameshift 2 0 high [],inversion CDKN2A NA FAM71BP1 AL353753.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_49FQXT2E ARRIBA other 9 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +11:33096826 11:32036068 CSTF3--AL035078.1 BS_49FQXT2E ARRIBA frameshift 6 0 low [INTRACHROMOSOMAL[chr11:1.04Mb]],deletion CSTF3 NA AL035078.1 NA NA NA NA NA NA +11:6639817 11:29881482 DCHS1--AC107973.1 BS_49FQXT2E ARRIBA frameshift 44 5 high [INTRACHROMOSOMAL[chr11:23.06Mb]],inversion DCHS1 NA AC107973.1 NA NA NA NA NA NA +11:6655563 11:29881482 DCHS1--AC107973.1 BS_49FQXT2E ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:23.06Mb]],inversion DCHS1 NA AC107973.1 NA NA NA NA NA NA +11:6639817 11:29881482 DCHS1--AC107973.1 BS_49FQXT2E STARFUSION other 50 7 NA [INTRACHROMOSOMAL[chr11:23.06Mb]] DCHS1 NA AC107973.1 NA NA NA NA NA NA +11:9264961 11:43679338 DENND5A--AC068205.2 BS_49FQXT2E ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr11:34.38Mb]],duplication/5'-5' DENND5A NA AC068205.2 NA NA NA NA NA NA +11:6497450 11:22900551 DNHD1--AC006299.1 BS_49FQXT2E ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr11:16.24Mb]],duplication DNHD1 NA AC006299.1 NA NA NA NA NA NA +11:6497450 11:7038566 DNHD1--NLRP14 BS_49FQXT2E ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr11:0.43Mb]],inversion/3'-3' DNHD1 NA NLRP14 NA NA NA NA NA NA +7:112206102 17:15615809 DOCK4--AC005324.3 BS_49FQXT2E ARRIBA in-frame 6 1 high [INTERCHROMOSOMAL[chr7--chr17]],translocation DOCK4 NA AC005324.3 NA NA NA NA NA NA +7:112206102 17:15607683 DOCK4--AC005324.3 BS_49FQXT2E ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr7--chr17]],translocation DOCK4 NA AC005324.3 NA NA NA NA NA NA +7:112206102 17:15615809 DOCK4--CDRT1 BS_49FQXT2E ARRIBA in-frame 6 1 high [INTERCHROMOSOMAL[chr7--chr17]],translocation DOCK4 NA CDRT1 NA NA NA NA NA NA +7:112206102 17:15607683 DOCK4--CDRT1 BS_49FQXT2E ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr7--chr17]],translocation DOCK4 NA CDRT1 NA NA NA NA NA NA +15:65478880 2:10132510 DPP8--AC007240.1 BS_49FQXT2E ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr15--chr2]],translocation/5'-5' DPP8 NA AC007240.1 NA NA NA NA NA NA +22:31439829 22:41539432 EIF4ENIF1--POLR3H BS_49FQXT2E ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr22:10.03Mb]],duplication EIF4ENIF1 NA POLR3H NA NA NA NA NA NA +22:31440704 22:41532745 EIF4ENIF1--POLR3H BS_49FQXT2E ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr22:10.03Mb]],duplication EIF4ENIF1 NA POLR3H NA NA NA NA NA NA +22:31439829 22:41539432 EIF4ENIF1--POLR3H BS_49FQXT2E STARFUSION other 10 1 NA [INTRACHROMOSOMAL[chr22:10.03Mb]] EIF4ENIF1 NA POLR3H NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_49FQXT2E ARRIBA in-frame 28 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +12:111363041 12:111453845 FAM109A--ATXN2 BS_49FQXT2E ARRIBA in-frame 10 2 high [INTRACHROMOSOMAL[chr12:0.08Mb],LOCAL_REARRANGEMENT:-:[83093]],duplication FAM109A NA ATXN2 NA NA NA NA NA NA +12:111363041 12:111453845 FAM109A--ATXN2 BS_49FQXT2E STARFUSION in-frame 10 2 NA [INTRACHROMOSOMAL[chr12:0.08Mb],LOCAL_REARRANGEMENT:-:[83093]] FAM109A NA ATXN2 NA NA NA NA NA NA +11:33748777 11:35017015 FBXO3--PDHX BS_49FQXT2E ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr11:1.14Mb]],inversion FBXO3 NA PDHX NA NA NA NA NA NA +12:4444133 X:10063445 FGF6--WWC3 BS_49FQXT2E ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chrX]],translocation FGF6 NA WWC3 NA Oncogene NA NA NA NA +9:20720534 X:8991921 FOCAD--AC074281.1(9416)/FAM9B(32311) BS_49FQXT2E ARRIBA frameshift 5 1 high [],translocation FOCAD NA AC074281.1 FAM9B NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_49FQXT2E STARFUSION other 4 10 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +X:13938507 X:14009169 GPM6B--GEMIN8 BS_49FQXT2E ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chrX:0.07Mb],LOCAL_REARRANGEMENT:-:[69641]],duplication GPM6B NA GEMIN8 NA NA NA NA NA NA +3:113904272 3:113901031 GRAMD1C--GRAMD1C BS_49FQXT2E ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.12Mb]],duplication/non-canonical_splicing GRAMD1C NA GRAMD1C NA NA NA NA NA NA +11:33287511 11:32101418 HIPK3--AL078612.1 BS_49FQXT2E ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr11:1.15Mb]],inversion HIPK3 NA AL078612.1 NA Kinase, Kinase NA NA NA NA +11:6431641 11:7038566 HPX--NLRP14 BS_49FQXT2E ARRIBA frameshift 2 0 high [INTRACHROMOSOMAL[chr11:0.58Mb]],inversion HPX NA NLRP14 NA NA NA NA NA NA +11:9384847 11:33286413 IPO7--HIPK3 BS_49FQXT2E ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr11:23.81Mb]],deletion IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA +11:9392320 11:33286413 IPO7--HIPK3 BS_49FQXT2E ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr11:23.81Mb]],deletion IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA +11:9384847 11:33286413 IPO7--HIPK3 BS_49FQXT2E STARFUSION other 16 1 NA [INTRACHROMOSOMAL[chr11:23.81Mb]] IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_49FQXT2E ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +1:154771975 16:80203015 KCNN3--AC105411.1 BS_49FQXT2E ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr1--chr16]],translocation/5'-5' KCNN3 NA AC105411.1 NA NA NA NA NA NA +11:29614095 11:6498939 LINC02546--DNHD1 BS_49FQXT2E ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr11:23.00Mb]],deletion LINC02546 NA DNHD1 NA NA NA NA NA NA +11:33881824 11:29642820 LMO2--LINC02546 BS_49FQXT2E ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr11:4.23Mb]],deletion/5'-5' LMO2 NA LINC02546 NA CosmicCensus, Oncogene NA NA NA NA +11:33881824 11:29642820 LMO2--LINC02546(12156)/HNRNPRP2(26066) BS_49FQXT2E ARRIBA other 5 0 medium [],deletion LMO2 NA LINC02546 HNRNPRP2 CosmicCensus, Oncogene NA NA NA NA +2:98635222 15:57618033 MGAT4A--GCOM1 BS_49FQXT2E ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr2--chr15]],translocation MGAT4A NA GCOM1 NA NA NA NA NA NA +2:98635222 15:57618033 MGAT4A--MYZAP BS_49FQXT2E ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr2--chr15]],translocation MGAT4A NA MYZAP NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_49FQXT2E ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +17:21241679 22:28366951 NATD1--TTC28 BS_49FQXT2E ARRIBA other 13 1 medium [INTERCHROMOSOMAL[chr17--chr22]],translocation/5'-5' NATD1 NA TTC28 NA NA NA NA NA NA +11:19351027 11:9785318 NAV2--SBF2 BS_49FQXT2E ARRIBA in-frame 13 1 high [INTRACHROMOSOMAL[chr11:9.06Mb]],inversion NAV2 NA SBF2 NA NA NA NA NA NA +12:4669817 12:29512120 NDUFA9--TMTC1 BS_49FQXT2E ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr12:24.81Mb]],inversion NDUFA9 NA TMTC1 NA NA NA NA NA NA +X:6226661 X:10495691 NLGN4X--MID1 BS_49FQXT2E ARRIBA other 10 0 high [INTRACHROMOSOMAL[chrX:4.22Mb]],inversion/3'-3' NLGN4X NA MID1 NA NA Oncogene NA NA NA +12:7191700 12:20717132 PEX5--SLCO1C1 BS_49FQXT2E ARRIBA in-frame 20 4 high [INTRACHROMOSOMAL[chr12:13.48Mb]],deletion PEX5 NA SLCO1C1 NA NA NA NA NA NA +12:7191700 12:20711386 PEX5--SLCO1C1 BS_49FQXT2E ARRIBA frameshift 9 6 high [INTRACHROMOSOMAL[chr12:13.48Mb]],deletion PEX5 NA SLCO1C1 NA NA NA NA NA NA +12:7191700 12:20715139 PEX5--SLCO1C1 BS_49FQXT2E ARRIBA in-frame 2 4 high [INTRACHROMOSOMAL[chr12:13.48Mb]],deletion PEX5 NA SLCO1C1 NA NA NA NA NA NA +12:7191358 12:20711386 PEX5--SLCO1C1 BS_49FQXT2E ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:13.48Mb]],deletion PEX5 NA SLCO1C1 NA NA NA NA NA NA +12:7191700 12:20717132 PEX5--SLCO1C1 BS_49FQXT2E STARFUSION in-frame 20 5 NA [INTRACHROMOSOMAL[chr12:13.48Mb]] PEX5 NA SLCO1C1 NA NA NA NA NA NA +12:7191700 12:20711386 PEX5--SLCO1C1 BS_49FQXT2E STARFUSION frameshift 9 5 NA [INTRACHROMOSOMAL[chr12:13.48Mb]] PEX5 NA SLCO1C1 NA NA NA NA NA NA +9:26946897 9:41056955 PLAA--FRG1HP BS_49FQXT2E ARRIBA frameshift 17 0 high [INTRACHROMOSOMAL[chr9:14.04Mb]],inversion PLAA NA FRG1HP NA NA NA NA NA NA +9:26946897 9:41056955 PLAA--PGM5P2 BS_49FQXT2E ARRIBA frameshift 17 0 high [INTRACHROMOSOMAL[chr9:14.06Mb]],inversion/5'-5' PLAA NA PGM5P2 NA NA NA NA NA NA +12:6318407 12:6152415 PLEKHG6--VWF(27645)/AC005845.1(2620) BS_49FQXT2E ARRIBA other 4 0 medium [],inversion PLEKHG6 NA VWF AC005845.1 NA NA NA NA NA +12:27682703 12:5358270 PPFIBP1--AC006206.2 BS_49FQXT2E ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr12:22.14Mb]],duplication PPFIBP1 NA AC006206.2 NA CosmicCensus, Oncogene NA NA NA NA +3:64444483 3:64686968 PRICKLE2--ADAMTS9 BS_49FQXT2E ARRIBA frameshift 3 0 high [FA_CancerSupp,INTRACHROMOSOMAL[chr3:0.07Mb],LOCAL_REARRANGEMENT:-:[70178]],duplication PRICKLE2 NA ADAMTS9 NA NA TumorSuppressorGene NA NA TCGAFusion +7:103364307 7:103523531 PSMC2--RELN BS_49FQXT2E ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr7:0.10Mb]],inversion PSMC2 NA RELN NA NA NA NA NA NA +11:32103480 11:33299639 RCN1--HIPK3 BS_49FQXT2E ARRIBA frameshift 22 1 high [INTRACHROMOSOMAL[chr11:1.15Mb]],inversion/3'-3' RCN1 NA HIPK3 NA NA Kinase, Kinase NA NA NA +1:2397220 15:100281401 RER1--ADAMTS17 BS_49FQXT2E ARRIBA frameshift 13 1 high [INTERCHROMOSOMAL[chr1--chr15]],translocation RER1 NA ADAMTS17 NA NA NA NA NA NA +1:2395871 15:100281401 RER1--ADAMTS17 BS_49FQXT2E ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr1--chr15]],translocation RER1 NA ADAMTS17 NA NA NA NA NA NA +1:2397220 15:100281401 RER1--ADAMTS17 BS_49FQXT2E STARFUSION frameshift 13 1 NA [INTERCHROMOSOMAL[chr1--chr15]] RER1 NA ADAMTS17 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_49FQXT2E ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:9758503 11:19519894 SBF2-AS1--NAV2-AS4 BS_49FQXT2E ARRIBA other 3 0 high [HGNC_GENEFAM,INTRACHROMOSOMAL[chr11:9.70Mb]],inversion SBF2-AS1 NA NAV2-AS4 NA NA NA NA NA NA +4:129082306 4:62031442 SCLT1--ADGRL3 BS_49FQXT2E ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr4:66.79Mb]],inversion SCLT1 NA ADGRL3 NA Oncogene NA NA NA NA +22:31496637 22:39415006 SFI1--TAB1 BS_49FQXT2E ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr22:7.78Mb]],deletion SFI1 NA TAB1 NA NA NA NA NA NA +11:35280867 11:6361057 SLC1A2--AC068733.3(37034)/AC068733.1(1742) BS_49FQXT2E ARRIBA frameshift 5 1 medium [],deletion SLC1A2 NA AC068733.3 AC068733.1 NA NA NA NA NA +11:35280867 11:23313250 SLC1A2--AC090092.1(110089)/AC100767.2(56866) BS_49FQXT2E ARRIBA frameshift 209 13 high [],deletion SLC1A2 NA AC090092.1 AC100767.2 NA NA NA NA NA +11:35280867 11:9673404 SLC1A2--SWAP70 BS_49FQXT2E ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr11:25.50Mb]],deletion/5'-5' SLC1A2 NA SWAP70 NA NA Oncogene NA NA NA +2:200389283 2:171893258 SPATS2L--SLC25A12 BS_49FQXT2E ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr2:28.31Mb]],inversion SPATS2L NA SLC25A12 NA NA NA NA NA NA +11:8810517 11:35494272 ST5--PAMR1 BS_49FQXT2E ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr11:26.52Mb]],duplication ST5 NA PAMR1 NA TumorSuppressorGene, Oncogene NA NA NA NA +11:6481852 11:33980240 TIMM10B--LMO2(87951)/CAPRIN1(71443) BS_49FQXT2E ARRIBA frameshift 4 0 medium [],inversion TIMM10B NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA +12:26995237 12:5270205 TM7SF3--LINC02443(27054)/AC006206.2(20275) BS_49FQXT2E ARRIBA frameshift 3 0 medium [],inversion TM7SF3 NA LINC02443 AC006206.2 NA NA NA NA NA +22:50233316 22:50246966 TUBGCP6--HDAC10 BS_49FQXT2E ARRIBA in-frame 20 1 high [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[191]],duplication TUBGCP6 NA HDAC10 NA NA NA NA NA NA +22:50233316 22:50246966 TUBGCP6--MAPK12 BS_49FQXT2E ARRIBA frameshift 13 0 high [CCLE,INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[458]],duplication TUBGCP6 NA MAPK12 NA NA Oncogene, Kinase NA NA NA +X:10079804 12:4445273 WWC3--FGF6 BS_49FQXT2E ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chrX--chr12]],translocation WWC3 NA FGF6 NA NA Oncogene NA NA NA +X:10079804 12:4444236 WWC3--FGF6 BS_49FQXT2E ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chrX--chr12]],translocation WWC3 NA FGF6 NA NA Oncogene NA NA NA +X:10079804 12:4449182 WWC3--FGF6(3568)/C12orf4(38546) BS_49FQXT2E ARRIBA frameshift 3 0 high [],translocation WWC3 NA FGF6 C12orf4 NA Oncogene NA NA NA +16:28166508 16:31528458 XPO6--AHSP BS_49FQXT2E ARRIBA frameshift 36 2 high [INTRACHROMOSOMAL[chr16:3.32Mb]],inversion XPO6 NA AHSP NA NA NA NA NA NA +16:28166508 16:31528458 XPO6--AHSP BS_49FQXT2E STARFUSION frameshift 37 2 NA [INTRACHROMOSOMAL[chr16:3.32Mb]] XPO6 NA AHSP NA NA NA NA NA NA +1:155668627 20:2280011 YY1AP1--AL121899.1(66860)/TGM3(15990) BS_49FQXT2E ARRIBA frameshift 2 1 medium [],translocation YY1AP1 NA AL121899.1 TGM3 NA NA NA TumorSuppressorGene NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_49VCQD19 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_49VCQD19 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:22588947 14:22780051 DAD1--SLC7A7 BS_49VCQD19 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr14:0.18Mb]],duplication DAD1 NA SLC7A7 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_49VCQD19 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4A45GGSW ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4A45GGSW ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_4A45GGSW ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +10:4961283 10:4830675 AKR1C6P(69308)/U8(1153)--AKR1E2 BS_4A45GGSW ARRIBA other 1 0 low [],duplication AKR1C6P U8 AKR1E2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_4A45GGSW ARRIBA in-frame 7 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +13:19741565 13:19835689 PSPC1--ZMYM5 BS_4A45GGSW ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_4A45GGSW ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4A45GGSW ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4B0BAVTX ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4B0BAVTX ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:3657662 17:21753516 AC027796.4--KCNJ18(48904)/AC243725.1(20238) BS_4B0BAVTX ARRIBA other 3 0 medium [],duplication AC027796.4 NA KCNJ18 AC243725.1 NA NA NA NA NA +X:103408299 X:103478212 AL606763.1--AL606763.1(69913)/Z69733.1(19311) BS_4B0BAVTX ARRIBA other 8 0 medium [],inversion AL606763.1 NA AL606763.1 Z69733.1 NA NA NA NA NA +15:72572165 X:77902643 ARIH1--COX7B BS_4B0BAVTX ARRIBA in-frame 8 0 high [INTERCHROMOSOMAL[chr15--chrX]],translocation ARIH1 NA COX7B NA NA NA NA NA NA +15:80404546 2:136110840 ARNT2--AC068492.1(32327)/CXCR4(3509) BS_4B0BAVTX ARRIBA frameshift 9 0 high [],translocation ARNT2 NA AC068492.1 CXCR4 TranscriptionFactor NA NA CosmicCensus NA +X:77616613 X:99378115 ATRX--AL157778.1(513131)/AL137843.1(278882) BS_4B0BAVTX ARRIBA frameshift 4 0 high [],duplication ATRX NA AL157778.1 AL137843.1 CosmicCensus, Oncogene NA NA NA NA +3:185131991 18:54919376 C3orf70--CCDC68 BS_4B0BAVTX ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr3--chr18]],translocation C3orf70 NA CCDC68 NA NA NA NA NA NA +3:185152628 18:54919376 C3orf70--CCDC68 BS_4B0BAVTX ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr3--chr18]],translocation C3orf70 NA CCDC68 NA NA NA NA NA NA +3:180616281 3:180711382 CCDC39--CCDC39 BS_4B0BAVTX ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.27Mb]],duplication/non-canonical_splicing CCDC39 NA CCDC39 NA NA NA NA NA NA +18:54907786 18:47511740 CCDC68--AC102797.1 BS_4B0BAVTX ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr18:7.34Mb]],inversion CCDC68 NA AC102797.1 NA NA NA NA NA NA +18:54907786 3:180619970 CCDC68--CCDC39 BS_4B0BAVTX ARRIBA frameshift 12 3 high [INTERCHROMOSOMAL[chr18--chr3]],translocation CCDC68 NA CCDC39 NA NA NA NA NA NA +18:54917913 3:180619970 CCDC68--CCDC39 BS_4B0BAVTX ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr18--chr3]],translocation CCDC68 NA CCDC39 NA NA NA NA NA NA +18:54907786 3:180619365 CCDC68--CCDC39 BS_4B0BAVTX ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr18--chr3]],translocation CCDC68 NA CCDC39 NA NA NA NA NA NA +18:54907786 3:180619970 CCDC68--CCDC39 BS_4B0BAVTX STARFUSION frameshift 14 3 NA [INTERCHROMOSOMAL[chr18--chr3]] CCDC68 NA CCDC39 NA NA NA NA NA NA +6:47582065 6:13053365 CD2AP--PHACTR1 BS_4B0BAVTX ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr6:34.19Mb]],duplication CD2AP NA PHACTR1 NA NA NA NA NA NA +6:47582065 6:12933633 CD2AP--PHACTR1 BS_4B0BAVTX ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr6:34.19Mb]],duplication CD2AP NA PHACTR1 NA NA NA NA NA NA +X:85911261 11:48618510 CHM--OR4A42P(7510)/OR4A44P(9036) BS_4B0BAVTX ARRIBA frameshift 3 0 high [],translocation CHM NA OR4A42P OR4A44P NA NA NA NA NA +17:1436779 18:23570364 CRK--NPC1 BS_4B0BAVTX ARRIBA frameshift 11 0 medium [INTERCHROMOSOMAL[chr17--chr18]],translocation/5'-5' CRK NA NPC1 NA Oncogene NA NA NA NA +10:35028810 10:21015533 CUL2--NEBL BS_4B0BAVTX ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr10:13.83Mb]],inversion/5'-5' CUL2 NA NEBL NA TumorSuppressorGene NA NA NA NA +X:86149108 X:86486628 DACH2--DACH2 BS_4B0BAVTX ARRIBA frameshift 7 2 medium [SELFIE,INTRACHROMOSOMAL[chrX:0.68Mb]],inversion/3'-3' DACH2 NA DACH2 NA Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA +2:135961396 11:30044455 DARS--AC124657.1 BS_4B0BAVTX ARRIBA frameshift 13 1 high [INTERCHROMOSOMAL[chr2--chr11]],translocation DARS NA AC124657.1 NA NA NA NA NA NA +2:135961396 11:30044455 DARS--AC124657.1 BS_4B0BAVTX STARFUSION other 13 1 NA [INTERCHROMOSOMAL[chr2--chr11]] DARS NA AC124657.1 NA NA NA NA NA NA +17:21172196 17:3862283 DHRS7B--CAMKK1 BS_4B0BAVTX ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr17:17.23Mb]],inversion DHRS7B NA CAMKK1 NA NA Kinase, Kinase NA NA NA +20:45795443 20:57334750 DNTTIP1--SPO11 BS_4B0BAVTX ARRIBA in-frame 23 0 high [INTRACHROMOSOMAL[chr20:11.52Mb]],deletion DNTTIP1 NA SPO11 NA TranscriptionFactor NA NA NA NA +20:45795443 20:57334750 DNTTIP1--SPO11 BS_4B0BAVTX STARFUSION in-frame 26 0 NA [INTRACHROMOSOMAL[chr20:11.52Mb]] DNTTIP1 NA SPO11 NA TranscriptionFactor NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_4B0BAVTX ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +9:36246031 11:50207744 GNE--AC109635.5(17303)/AC109635.1(38810) BS_4B0BAVTX ARRIBA frameshift 8 0 high [],translocation GNE NA AC109635.5 AC109635.1 NA NA NA NA NA +14:102101875 7:140721552 HSP90AA1--NDUFB2 BS_4B0BAVTX ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr14--chr7]],translocation HSP90AA1 NA NDUFB2 NA CosmicCensus, Oncogene NA NA NA NA +15:98708107 19:8462529 IGF1R--HNRNPM BS_4B0BAVTX ARRIBA in-frame 5 1 medium [INTERCHROMOSOMAL[chr15--chr19]],translocation IGF1R NA HNRNPM NA Kinase, Oncogene, Kinase NA NA NA NA +15:98708107 19:8455405 IGF1R--HNRNPM BS_4B0BAVTX ARRIBA frameshift 3 2 medium [INTERCHROMOSOMAL[chr15--chr19]],translocation IGF1R NA HNRNPM NA Kinase, Oncogene, Kinase NA NA NA NA +18:51392257 3:159886207 LINC01630--SCHIP1 BS_4B0BAVTX ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr18--chr3]],translocation LINC01630 NA SCHIP1 NA NA NA NA NA NA +18:51387301 3:159886207 LINC01630--SCHIP1 BS_4B0BAVTX ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr18--chr3]],translocation LINC01630 NA SCHIP1 NA NA NA NA NA NA +15:94315637 15:94628223 MCTP2--AC009432.1(27402)/AC087633.2(212836) BS_4B0BAVTX ARRIBA frameshift 2 0 medium [],inversion MCTP2 NA AC009432.1 AC087633.2 NA NA NA NA NA +X:107854704 11:32296733 MID2--THEM7P BS_4B0BAVTX ARRIBA frameshift 12 0 high [INTERCHROMOSOMAL[chrX--chr11]],translocation/5'-5' MID2 NA THEM7P NA NA NA NA NA NA +11:19351027 X:108539746 NAV2--COL4A5 BS_4B0BAVTX ARRIBA in-frame 7 1 high [INTERCHROMOSOMAL[chr11--chrX]],translocation NAV2 NA COL4A5 NA NA NA NA NA NA +15:101366196 2:122063069 PCSK6--LINC01823(266367)/AC062020.1(1002252) BS_4B0BAVTX ARRIBA frameshift 3 0 high [],translocation PCSK6 NA LINC01823 AC062020.1 NA NA NA NA NA +11:34970286 2:135602500 PDHX--R3HDM1 BS_4B0BAVTX ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr11--chr2]],translocation PDHX NA R3HDM1 NA NA NA NA NA NA +17:6449733 17:18786010 PIMREG--TVP23B BS_4B0BAVTX ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr17:12.33Mb]],duplication PIMREG NA TVP23B NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4B0BAVTX ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:159840214 18:54919376 SCHIP1--CCDC68 BS_4B0BAVTX ARRIBA frameshift 17 0 high [INTERCHROMOSOMAL[chr3--chr18]],translocation SCHIP1 NA CCDC68 NA NA NA NA NA NA +3:159840214 18:54917996 SCHIP1--CCDC68 BS_4B0BAVTX ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr3--chr18]],translocation SCHIP1 NA CCDC68 NA NA NA NA NA NA +3:159840214 18:54919376 SCHIP1--CCDC68 BS_4B0BAVTX STARFUSION frameshift 18 0 NA [INTERCHROMOSOMAL[chr3--chr18]] SCHIP1 NA CCDC68 NA NA NA NA NA NA +17:63099357 18:64258519 TANC2--LINC01538 BS_4B0BAVTX ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr17--chr18]],translocation TANC2 NA LINC01538 NA NA NA NA NA NA +17:63099357 18:64264491 TANC2--LINC01924 BS_4B0BAVTX ARRIBA frameshift 7 0 high [INTERCHROMOSOMAL[chr17--chr18]],translocation/5'-5' TANC2 NA LINC01924 NA NA NA NA NA NA +4:16355785 4:16238771 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_4B0BAVTX ARRIBA other 3 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +15:89619842 21:38441018 TICRR--ERG BS_4B0BAVTX ARRIBA frameshift 7 0 high [INTERCHROMOSOMAL[chr15--chr21]],translocation/5'-5' TICRR NA ERG NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +7:138554864 7:140787584 TRIM24--BRAF BS_4B0BAVTX ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr7:2.13Mb]],inversion TRIM24 NA BRAF NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138554966 7:140787584 TRIM24--BRAF BS_4B0BAVTX ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:2.13Mb]],inversion TRIM24 NA BRAF NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +18:63399242 18:57833111 VPS4B--ATP8B1(30010)/RSL24D1P11(5365) BS_4B0BAVTX ARRIBA frameshift 5 0 high [],inversion VPS4B NA ATP8B1 RSL24D1P11 NA Oncogene NA NA NA +12:883568 18:2858056 WNK1--EMILIN2 BS_4B0BAVTX ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr12--chr18]],translocation/5'-5' WNK1 NA EMILIN2 NA Kinase, Kinase NA NA NA NA +19:9140592 2:122980154 ZNF317--LINC01823(1183452)/AC062020.1(85167) BS_4B0BAVTX ARRIBA other 7 0 high [],translocation ZNF317 NA LINC01823 AC062020.1 TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4BWB0FA0 ARRIBA other 120 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4BWB0FA0 ARRIBA other 120 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_4BWB0FA0 ARRIBA in-frame 5 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_4BWB0FA0 ARRIBA other 120 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995911 14:20343397 7SK--AL355075.4 BS_4C4MZ4NT STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL355075.4 NA NA NA NA NA NA +6:52995911 14:20343397 7SK--RPPH1 BS_4C4MZ4NT STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4C4MZ4NT ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4C4MZ4NT ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_4C4MZ4NT ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_4C4MZ4NT ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_4C4MZ4NT ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_4C4MZ4NT ARRIBA in-frame 6 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_4C4MZ4NT ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4C4MZ4NT ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_4C4MZ4NT ARRIBA other 8 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4CP4T22V ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4CP4T22V ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_4CP4T22V ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +20:46485529 20:46504740 AL031686.1--ZNF334 BS_4CP4T22V ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_4CP4T22V ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4CP4T22V ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:110432811 7:109841570 AC092167.1--AC073387.2(77213)/EIF3IP1(117648) BS_4D9DD103 ARRIBA other 2 1 high [],deletion AC092167.1 NA AC073387.2 EIF3IP1 NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_4D9DD103 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_4D9DD103 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_4D9DD103 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_4D9DD103 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_4D9DD103 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100561397 CAVIN4--TMEFF1 BS_4D9DD103 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +8:43180201 5:79130933 HGSNAT--BHMT BS_4D9DD103 ARRIBA other 37 9 high [INTERCHROMOSOMAL[chr8--chr5]],translocation/3'-3' HGSNAT NA BHMT NA NA NA NA NA NA +6:88769774 6:88844521 RNGTT--RNGTT BS_4D9DD103 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.35Mb]],duplication/non-canonical_splicing RNGTT NA RNGTT NA NA NA NA NA NA +8:52142930 8:52172583 ST18--ST18 BS_4D9DD103 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_4D9DD103 ARRIBA other 32 5 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +1:216175252 1:216207431 USH2A--USH2A BS_4D9DD103 ARRIBA in-frame 5 4 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4E1G7E3G ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4E1G7E3G ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:35657755 1:16936639 RMRP--CROCC BS_4E1G7E3G ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr9--chr1]],translocation RMRP NA CROCC NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4E1G7E3G ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:48809642 2:48799306 AC009975.1--ELOBP3(18411)/AC009975.1(10034) BS_4EN8D8Y4 ARRIBA other 1 1 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA +12:82687669 12:82456727 TMTC2--METTL25 BS_4EN8D8Y4 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr12:0.21Mb]],duplication TMTC2 NA METTL25 NA NA NA NA NA NA +6:52995908 14:49586590 7SK--AL139099.5 BS_4FZS7TX4 STARFUSION other 4 6 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL139099.5 NA NA NA NA NA NA +6:52995908 14:49586593 7SK--RN7SL1 BS_4FZS7TX4 STARFUSION other 4 6 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4FZS7TX4 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4FZS7TX4 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_4FZS7TX4 ARRIBA other 4 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +5:90985522 5:90763305 ADGRV1--ADGRV1 BS_4FZS7TX4 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_4FZS7TX4 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +14:49586758 6:52995792 AL139099.5--RN7SK BS_4FZS7TX4 STARFUSION other 5 8 NA [INTERCHROMOSOMAL[chr14--chr6]] AL139099.5 NA RN7SK NA NA NA NA NA NA +X:36205110 X:36179345 CFAP47--CFAP47 BS_4FZS7TX4 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +12:123859268 12:123853206 DNAH10--DNAH10 BS_4FZS7TX4 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_4FZS7TX4 ARRIBA other 4 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +12:85137969 12:85098355 LRRIQ1--LRRIQ1 BS_4FZS7TX4 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.23Mb]],duplication/non-canonical_splicing LRRIQ1 NA LRRIQ1 NA NA NA NA NA NA +14:49586759 6:52995787 RN7SL1--7SK BS_4FZS7TX4 STARFUSION other 3 8 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4FZS7TX4 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +13:36189946 13:36256167 SOHLH2--CCDC169 BS_4FZS7TX4 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr13:0.01Mb],LOCAL_REARRANGEMENT:-:[7393]],duplication SOHLH2 NA CCDC169 NA TranscriptionFactor NA NA NA NA +2:139368484 2:139339254 AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_4GTESTSE ARRIBA other 20 2 high [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA +5:91102340 5:90781430 ADGRV1--ADGRV1 BS_4GTESTSE ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_4GTESTSE ARRIBA other 27 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +16:70508406 16:63119365 COG4--AC040174.1 BS_4GTESTSE ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr16:7.35Mb]],deletion COG4 NA AC040174.1 NA NA NA NA NA NA +2:196047352 2:196069137 DNAH7--DNAH7(325)/STK17B(64429) BS_4GTESTSE ARRIBA frameshift 3 0 high [],duplication DNAH7 NA DNAH7 STK17B NA NA NA Kinase NA +3:55683794 3:55992250 ERC2--ERC2 BS_4GTESTSE ARRIBA in-frame 22 4 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_4GTESTSE ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_4GTESTSE ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_4GTESTSE ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_4GTESTSE ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +11:14243396 11:14519041 SPON1--AC018523.2 BS_4GTESTSE ARRIBA frameshift 13 2 high [INTRACHROMOSOMAL[chr11:0.23Mb]],inversion SPON1 NA AC018523.2 NA NA NA NA NA NA +11:14243396 11:14519041 SPON1--PSMA1 BS_4GTESTSE ARRIBA frameshift 13 2 high [INTRACHROMOSOMAL[chr11:0.24Mb]],inversion SPON1 NA PSMA1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4HQ3T2NC ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4HQ3T2NC ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_4HQ3T2NC ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_4HQ3T2NC ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_4HQ3T2NC ARRIBA other 9 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_4HQ3T2NC STARFUSION other 6 14 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +7:138861139 7:140781693 KIAA1549--BRAF BS_4HQ3T2NC ARRIBA in-frame 8 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_4HQ3T2NC ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4HQ3T2NC ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +17:67218595 17:67575318 HELZ--PITPNC1 BS_4JWBB28H ARRIBA frameshift 12 2 high [ChimerSeq,INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/5'-5' HELZ NA PITPNC1 NA NA NA NA NA TCGAFusion +17:67218595 17:67605227 HELZ--PITPNC1 BS_4JWBB28H ARRIBA frameshift 2 0 low [ChimerSeq,INTRACHROMOSOMAL[chr17:0.13Mb]],inversion HELZ NA PITPNC1 NA NA NA NA NA TCGAFusion +2:222220140 2:24710931 PAX3--NCOA1 BS_4JWBB28H ARRIBA in-frame 83 20 high [Cosmic,ChimerPub,ChimerSeq,ChimerKB,chimerdb_pubmed,INTRACHROMOSOMAL[chr2:197.43Mb]],inversion PAX3 NA NCOA1 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +2:222220140 2:24710931 PAX3--NCOA1 BS_4JWBB28H STARFUSION in-frame 87 22 NA [Cosmic,ChimerPub,ChimerSeq,ChimerKB,chimerdb_pubmed,INTRACHROMOSOMAL[chr2:197.43Mb]] PAX3 NA NCOA1 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +2:24080838 2:220205079 TP53I3--AC019211.1 BS_4JWBB28H ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr2:196.02Mb]],deletion/3'-3' TP53I3 NA AC019211.1 NA NA NA NA NA NA +2:24080838 2:220205079 TP53I3--AC093083.1 BS_4JWBB28H ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr2:196.04Mb]],deletion/3'-3' TP53I3 NA AC093083.1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4NF35AF6 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4NF35AF6 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:139368484 2:139339254 AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_4NF35AF6 ARRIBA other 4 0 medium [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_4NF35AF6 ARRIBA other 13 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_4NF35AF6 ARRIBA other 9 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +6:117566854 6:117321394 GOPC--ROS1 BS_4NF35AF6 ARRIBA in-frame 58 6 high [chimerdb_pubmed,ChimerKB,ChimerPub,Cosmic,Mitelman,INTRACHROMOSOMAL[chr6:0.13Mb]],deletion/read-through GOPC NA ROS1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_4NF35AF6 ARRIBA other 7 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +8:10477898 8:10470816 LINCR-0001--AC104964.2(32504)/LINCR-0001(3749) BS_4NF35AF6 ARRIBA other 4 0 medium [],duplication LINCR-0001 NA AC104964.2 LINCR-0001 NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_4NF35AF6 ARRIBA other 13 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4NF35AF6 ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:148747677 6:147876578 UST--AL033504.1 BS_4NF35AF6 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr6:0.79Mb]],inversion/3'-3' UST NA AL033504.1 NA NA NA NA NA NA +7:65873565 7:65442442 VKORC1L1--ZNF92(41307)/AC114501.3(20629) BS_4NF35AF6 ARRIBA frameshift 2 0 high [],inversion VKORC1L1 NA ZNF92 AC114501.3 NA TranscriptionFactor NA NA NA +12:27958606 12:28133252 AC008011.2--CCDC91 BS_4NWHYH53 STARFUSION other 7 0 NA [INTRACHROMOSOMAL[chr12:0.16Mb]] AC008011.2 NA CCDC91 NA NA NA NA NA NA +21:14825522 21:15043573 AF127577.4--NRIP1 BS_4NWHYH53 ARRIBA other 2 3 high [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA +21:15014344 21:15043574 AF127577.4--NRIP1 BS_4NWHYH53 ARRIBA other 1 0 low [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_4NWHYH53 ARRIBA in-frame 88 12 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662088 C11orf95--RELA BS_4NWHYH53 ARRIBA in-frame 2 8 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_4NWHYH53 ARRIBA in-frame 12 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_4NWHYH53 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_4NWHYH53 STARFUSION in-frame 93 12 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_4NWHYH53 STARFUSION in-frame 12 12 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +21:14825522 21:15043573 LINC02246--NRIP1 BS_4NWHYH53 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr21:0.04Mb],LOCAL_REARRANGEMENT:-:[42683]],duplication LINC02246 NA NRIP1 NA NA Oncogene NA NA NA +12:96909895 12:96870504 NEDD1--CFAP54 BS_4NWHYH53 STARFUSION other 7 2 NA [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]] NEDD1 NA CFAP54 NA NA NA NA NA NA +11:65661937 11:63766032 RELA--C11orf95 BS_4NWHYH53 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],deletion RELA NA C11orf95 NA Oncogene, TranscriptionFactor NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_4NWHYH53 ARRIBA frameshift 15 3 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +3:181231846 1:235127925 RNU6-4P--SNORA14B BS_4NWHYH53 STARFUSION other 10 0 NA [INTERCHROMOSOMAL[chr3--chr1]] RNU6-4P NA SNORA14B NA NA NA NA NA NA +3:181231845 6:159780370 RNU6-4P--SNORA20 BS_4NWHYH53 STARFUSION other 14 0 NA [INTERCHROMOSOMAL[chr3--chrY]] RNU6-4P NA SNORA20 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--METTL12 BS_4NWHYH53 STARFUSION other 25 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--SNORA57 BS_4NWHYH53 STARFUSION other 25 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +10:88623167 10:88587266 RPL7P34(4233)/LIPF(41274)--LIPJ BS_4NWHYH53 ARRIBA other 3 1 high [],duplication RPL7P34 LIPF LIPJ NA NA NA NA NA NA +1:173573182 1:173598032 SLC9C2--SLC9C2 BS_4NWHYH53 ARRIBA frameshift 5 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.10Mb]],duplication/non-canonical_splicing SLC9C2 NA SLC9C2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4PH1MBGR ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4PH1MBGR ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_4PH1MBGR ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_4PH1MBGR ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:38462233 9:38456118 AL390726.6--AL390726.6 BS_4PH1MBGR ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing AL390726.6 NA AL390726.6 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_4PH1MBGR ARRIBA other 9 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +19:581499 19:636037 BSG--POLRMT(2433)/AC004449.1(1068) BS_4PH1MBGR ARRIBA frameshift 40 0 medium [],inversion BSG NA POLRMT AC004449.1 NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_4PH1MBGR ARRIBA frameshift 23 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_4PH1MBGR ARRIBA other 1 2 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_4PH1MBGR ARRIBA frameshift 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +19:709151 19:384601 PALM--THEG(7931)/AC010641.1(12988) BS_4PH1MBGR ARRIBA frameshift 3 0 medium [],duplication PALM NA THEG AC010641.1 NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_4PH1MBGR ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +13:19751271 13:19835689 PSPC1--ZMYM5 BS_4PH1MBGR ARRIBA frameshift 2 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_4PH1MBGR ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_4PH1MBGR ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +15:24535806 15:24508861 PWRN1--PWRN1 BS_4PH1MBGR ARRIBA other 2 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.16Mb]],duplication/non-canonical_splicing PWRN1 NA PWRN1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4PH1MBGR ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_4PH1MBGR ARRIBA frameshift 37 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_4PH1MBGR ARRIBA other 8 3 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +2:89581006 4:34858290 AC006453.2--AC093913.1(143692)/snoU13(107951) BS_4QW2S1Q8 ARRIBA other 6 0 medium [],translocation AC006453.2 NA AC093913.1 snoU13 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4QW2S1Q8 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4QW2S1Q8 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:157929612 4:120799745 AC017037.3(111040)/AC017037.4(16205)--PRDM5 BS_4QW2S1Q8 ARRIBA other 10 0 medium [],deletion AC017037.3 AC017037.4 PRDM5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_4QW2S1Q8 ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +13:111153991 7:53657448 ARHGEF7--LINC01446 BS_4QW2S1Q8 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr13--chr7]],translocation ARHGEF7 NA LINC01446 NA NA NA NA NA NA +5:173616200 17:21782880 BOD1--AC243725.1 BS_4QW2S1Q8 ARRIBA frameshift 9 0 high [INTERCHROMOSOMAL[chr5--chr17]],translocation BOD1 NA AC243725.1 NA NA NA NA NA NA +5:173616200 17:21775839 BOD1--AC243725.1 BS_4QW2S1Q8 ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr5--chr17]],translocation BOD1 NA AC243725.1 NA NA NA NA NA NA +7:82335135 7:53779659 CACNA2D1--LINC01446 BS_4QW2S1Q8 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:28.13Mb]],inversion/5'-5' CACNA2D1 NA LINC01446 NA NA NA NA NA NA +7:82335135 7:53779659 CACNA2D1--RAC1P9 BS_4QW2S1Q8 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr7:28.17Mb]],inversion CACNA2D1 NA RAC1P9 NA NA NA NA NA NA +7:116906342 9:33927992 CAPZA2--UBAP2 BS_4QW2S1Q8 ARRIBA frameshift 8 0 high [INTERCHROMOSOMAL[chr7--chr9]],translocation CAPZA2 NA UBAP2 NA NA NA NA NA NA +7:116904383 9:33927992 CAPZA2--UBAP2 BS_4QW2S1Q8 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr7--chr9]],translocation CAPZA2 NA UBAP2 NA NA NA NA NA NA +10:68761192 10:86206648 CCAR1--GRID1 BS_4QW2S1Q8 ARRIBA frameshift 13 1 high [INTRACHROMOSOMAL[chr10:16.81Mb]],inversion CCAR1 NA GRID1 NA TumorSuppressorGene NA NA NA NA +10:68761192 10:86139024 CCAR1--GRID1 BS_4QW2S1Q8 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:16.81Mb]],inversion CCAR1 NA GRID1 NA TumorSuppressorGene NA NA NA NA +10:68761192 10:86206648 CCAR1--GRID1 BS_4QW2S1Q8 STARFUSION frameshift 13 1 NA [INTRACHROMOSOMAL[chr10:16.81Mb]] CCAR1 NA GRID1 NA TumorSuppressorGene NA NA NA NA +7:92774696 7:99047655 CDK6--AC004893.2 BS_4QW2S1Q8 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:6.18Mb]],inversion CDK6 NA AC004893.2 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA +7:92774696 7:96653722 CDK6--SEM1 BS_4QW2S1Q8 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr7:3.65Mb]],inversion/5'-5' CDK6 NA SEM1 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA +10:125110990 10:68736876 CTBP2--CCAR1 BS_4QW2S1Q8 ARRIBA other 6 2 high [INTRACHROMOSOMAL[chr10:56.19Mb]],inversion CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA +10:125160319 10:68736876 CTBP2--CCAR1 BS_4QW2S1Q8 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr10:56.19Mb]],inversion CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA +10:125160827 10:68736876 CTBP2--CCAR1 BS_4QW2S1Q8 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:56.19Mb]],inversion CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA +4:154489304 4:41873201 DCHS2--LINC00682 BS_4QW2S1Q8 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr4:112.35Mb]],deletion DCHS2 NA LINC00682 NA NA NA NA NA NA +7:103337736 7:112822186 DNAJC2--BMT2 BS_4QW2S1Q8 ARRIBA frameshift 6 2 high [INTRACHROMOSOMAL[chr7:9.47Mb]],inversion/5'-5' DNAJC2 NA BMT2 NA NA NA NA NA NA +13:107865682 13:80337756 FAM155A--SPRY2 BS_4QW2S1Q8 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr13:26.82Mb]],deletion FAM155A NA SPRY2 NA NA TumorSuppressorGene NA NA NA +7:114426679 7:117240997 FOXP2--ST7(10894)/AC006326.1(21921) BS_4QW2S1Q8 ARRIBA frameshift 8 0 high [],deletion FOXP2 NA ST7 AC006326.1 TranscriptionFactor TumorSuppressorGene NA NA NA +10:86138819 10:72216934 GRID1--ASCC1 BS_4QW2S1Q8 ARRIBA frameshift 10 0 high [INTRACHROMOSOMAL[chr10:13.38Mb]],deletion GRID1 NA ASCC1 NA NA NA NA NA NA +10:86138819 10:68736876 GRID1--CCAR1 BS_4QW2S1Q8 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:16.81Mb]],inversion GRID1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA +10:86138819 10:68747161 GRID1--CCAR1 BS_4QW2S1Q8 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:16.81Mb]],inversion GRID1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA +10:86206364 10:68736876 GRID1--CCAR1 BS_4QW2S1Q8 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr10:16.81Mb]],inversion GRID1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA +10:100536661 10:132025294 HIF1AN--AL162274.3(25448)/JAKMIP3(79377) BS_4QW2S1Q8 ARRIBA frameshift 10 3 high [],inversion HIF1AN NA AL162274.3 JAKMIP3 NA NA NA NA NA +7:105081797 7:53465730 KMT2E--RNU1-14P(99521)/RN7SKP218(24418) BS_4QW2S1Q8 ARRIBA frameshift 3 0 medium [],inversion KMT2E NA RNU1-14P RN7SKP218 NA NA NA NA NA +7:107959249 7:106511226 LAMB1--AC004917.1 BS_4QW2S1Q8 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:1.15Mb]],inversion/5'-5' LAMB1 NA AC004917.1 NA NA NA NA NA NA +4:53557874 4:54737652 LNX1--KIT BS_4QW2S1Q8 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr4:0.96Mb]],duplication/5'-5' LNX1 NA KIT NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:116758620 7:44284225 MET--CAMK2B BS_4QW2S1Q8 ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chr7:72.34Mb]],inversion MET NA CAMK2B NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, Oncogene, Kinase NA NA NA +7:116783469 7:44153463 MET--GCK BS_4QW2S1Q8 ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr7:72.47Mb]],inversion MET NA GCK NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, Kinase NA NA NA +11:1546174 11:3735324 MOB2(44927)/DUSP8(7870)--NUP98 BS_4QW2S1Q8 ARRIBA other 5 0 medium [],inversion MOB2 DUSP8 NUP98 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +13:79533456 13:104715947 NDFIP2--ATP6V1G1P7(1270979)/RPL7P45(98380) BS_4QW2S1Q8 ARRIBA frameshift 2 0 medium [],inversion NDFIP2 NA ATP6V1G1P7 RPL7P45 NA NA NA NA NA +4:102501788 11:47511702 NFKB1--CELF1 BS_4QW2S1Q8 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr4--chr11]],translocation/5'-5' NFKB1 NA CELF1 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_4QW2S1Q8 ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +11:3713818 11:20561692 NUP98--PRMT3(52398)/HMGB1P40(12494) BS_4QW2S1Q8 ARRIBA frameshift 3 0 high [],duplication NUP98 NA PRMT3 HMGB1P40 TumorSuppressorGene, CosmicCensus, Oncogene TranscriptionFactor NA NA NA +10:70479059 10:125039155 PALD1--CTBP2 BS_4QW2S1Q8 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:54.42Mb]],inversion PALD1 NA CTBP2 NA NA NA NA NA NA +4:156970786 4:157929709 PDGFC--AC017037.3(111137)/AC017037.4(16108) BS_4QW2S1Q8 ARRIBA frameshift 12 1 high [],duplication PDGFC NA AC017037.3 AC017037.4 NA NA NA NA NA +4:156970786 4:120799745 PDGFC--PRDM5 BS_4QW2S1Q8 ARRIBA frameshift 12 1 high [INTRACHROMOSOMAL[chr4:35.84Mb]],deletion PDGFC NA PRDM5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +4:156970786 4:120799745 PDGFC--PRDM5 BS_4QW2S1Q8 STARFUSION frameshift 12 1 NA [INTRACHROMOSOMAL[chr4:35.84Mb]] PDGFC NA PRDM5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +7:103304490 9:35013649 PMPCB--SYF2P2(2364)/AL353795.3(24976) BS_4QW2S1Q8 ARRIBA frameshift 12 0 high [],translocation PMPCB NA SYF2P2 AL353795.3 NA NA NA NA NA +11:479152 11:10042981 PTDSS2--SBF2 BS_4QW2S1Q8 ARRIBA in-frame 8 0 high [INTRACHROMOSOMAL[chr11:9.29Mb]],inversion PTDSS2 NA SBF2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4QW2S1Q8 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:63113707 7:64437181 SAPCD2P4--YWHAEP1(2589)/VN1R40P(6621) BS_4QW2S1Q8 ARRIBA other 3 0 medium [],inversion SAPCD2P4 NA YWHAEP1 VN1R40P NA NA NA NA NA +4:53352598 4:51877763 SCFD2--DCUN1D4 BS_4QW2S1Q8 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr4:0.96Mb]],inversion SCFD2 NA DCUN1D4 NA NA NA NA NA NA +4:42001780 4:63474138 SLC30A9--AC093730.1 BS_4QW2S1Q8 ARRIBA frameshift 13 0 high [INTRACHROMOSOMAL[chr4:21.38Mb]],inversion SLC30A9 NA AC093730.1 NA NA NA NA NA NA +4:42018170 4:63474138 SLC30A9--AC093730.1 BS_4QW2S1Q8 ARRIBA frameshift 10 0 high [INTRACHROMOSOMAL[chr4:21.38Mb]],inversion SLC30A9 NA AC093730.1 NA NA NA NA NA NA +4:42001780 4:63474138 SLC30A9--AC093730.1 BS_4QW2S1Q8 STARFUSION other 15 0 NA [INTRACHROMOSOMAL[chr4:21.38Mb]] SLC30A9 NA AC093730.1 NA NA NA NA NA NA +4:42018170 4:63620822 SLC30A9--AC093730.1(126544)/TECRL(654435) BS_4QW2S1Q8 ARRIBA frameshift 3 0 medium [],inversion SLC30A9 NA AC093730.1 TECRL NA NA NA NA NA +7:116953691 7:116427322 ST7--CAV2 BS_4QW2S1Q8 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:0.44Mb]],duplication ST7 NA CAV2 NA TumorSuppressorGene NA NA NA NA +7:117119720 7:128997535 ST7--TNPO3 BS_4QW2S1Q8 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:11.72Mb]],inversion ST7 NA TNPO3 NA TumorSuppressorGene NA NA NA NA +7:99008561 7:66700769 TRRAP--RABGEF1 BS_4QW2S1Q8 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr7:32.07Mb]],duplication TRRAP NA RABGEF1 NA Kinase, CosmicCensus, Kinase NA NA NA NA +7:99008561 7:66712167 TRRAP--RABGEF1 BS_4QW2S1Q8 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:32.07Mb]],duplication TRRAP NA RABGEF1 NA Kinase, CosmicCensus, Kinase NA NA NA NA +7:99008561 7:66700769 TRRAP--RABGEF1 BS_4QW2S1Q8 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:32.07Mb]],duplication TRRAP NA RABGEF1 NA Kinase, CosmicCensus, Kinase NA NA NA NA +7:67018143 7:107961676 TYW1--LAMB1 BS_4QW2S1Q8 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr7:40.68Mb]],inversion TYW1 NA LAMB1 NA NA NA NA NA NA +9:33926989 7:67889863 UBAP2--AC092648.1(119395)/AC092637.1(130390) BS_4QW2S1Q8 ARRIBA frameshift 2 0 medium [],translocation UBAP2 NA AC092648.1 AC092637.1 NA NA NA NA NA +9:33926989 7:126772179 UBAP2--GRM8 BS_4QW2S1Q8 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr9--chr7]],translocation/5'-5' UBAP2 NA GRM8 NA NA NA NA NA NA +9:33912098 7:47104016 UBE2R2--AC004870.3(24888)/TNS3(171138) BS_4QW2S1Q8 ARRIBA frameshift 10 0 high [],translocation UBE2R2 NA AC004870.3 TNS3 NA NA NA NA NA +9:33912098 7:47137208 UBE2R2--AC004870.3(58080)/TNS3(137946) BS_4QW2S1Q8 ARRIBA frameshift 2 1 medium [],translocation UBE2R2 NA AC004870.3 TNS3 NA NA NA NA NA +6:37820016 6:50140542 ZFAND3--AL138826.1 BS_4QW2S1Q8 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr6:11.94Mb]],deletion ZFAND3 NA AL138826.1 NA NA NA NA NA NA +6:37820016 6:50117159 ZFAND3--AL138826.1 BS_4QW2S1Q8 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:11.94Mb]],deletion ZFAND3 NA AL138826.1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4SCWT0FX ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4SCWT0FX ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_4SCWT0FX ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +2:149486345 2:149449049 LYPD6(12197)/MMADHC(83289)--LYPD6 BS_4SCWT0FX ARRIBA other 2 2 high [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_4SCWT0FX ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_4SCWT0FX ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +17:31169997 17:31071912 NF1--AC138207.8 BS_4SCWT0FX ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr17:0.00Mb],LOCAL_REARRANGEMENT:+:[1800]],duplication NF1 NA AC138207.8 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4SCWT0FX ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4T0HPZDC ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4T0HPZDC ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_4T0HPZDC ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_4T0HPZDC ARRIBA other 5 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +X:36205110 X:36179345 CFAP47--CFAP47 BS_4T0HPZDC ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +7:137521866 7:137619940 DGKI--DGKI BS_4T0HPZDC ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +10:15248639 10:15284105 FAM171A1--FAM171A1 BS_4T0HPZDC ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.16Mb]],duplication/non-canonical_splicing FAM171A1 NA FAM171A1 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_4T0HPZDC ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_4T0HPZDC ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +1:176765837 1:176702607 PAPPA2--PAPPA2 BS_4T0HPZDC ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing PAPPA2 NA PAPPA2 NA Oncogene Oncogene NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_4T0HPZDC ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4T0HPZDC ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:26957726 4:26764303 STIM2--TBC1D19(8952)/STIM2(93375) BS_4T0HPZDC ARRIBA frameshift 1 1 high [],duplication STIM2 NA TBC1D19 STIM2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4W1DBAN4 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4W1DBAN4 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:219309917 1:219193082 AC096642.1(36530)/AL513283.1(99606)--LYPLAL1 BS_4W1DBAN4 ARRIBA other 1 2 high [],duplication AC096642.1 AL513283.1 LYPLAL1 NA NA NA NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_4W1DBAN4 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +21:15511119 21:15513934 AJ009632.2--AJ009632.2 BS_4W1DBAN4 ARRIBA other 2 1 low [SELFIE,INTRACHROMOSOMAL[chr21:0.26Mb]],duplication/non-canonical_splicing AJ009632.2 NA AJ009632.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_4W1DBAN4 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_4W1DBAN4 ARRIBA other 3 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +X:85894188 X:85964052 CHM--CHM BS_4W1DBAN4 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.19Mb]],duplication/non-canonical_splicing CHM NA CHM NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_4W1DBAN4 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +1:58253807 1:58539310 DAB1--OMA1 BS_4W1DBAN4 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58534331 DAB1--OMA1 BS_4W1DBAN4 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58536741 DAB1--OMA1 BS_4W1DBAN4 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58539310 DAB1--OMA1 BS_4W1DBAN4 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +3:55683794 3:55992250 ERC2--ERC2 BS_4W1DBAN4 ARRIBA in-frame 98 10 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:71244603 8:71334174 EYA1--EYA1 BS_4W1DBAN4 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.16Mb]],duplication/non-canonical_splicing EYA1 NA EYA1 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_4W1DBAN4 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_4W1DBAN4 ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_4W1DBAN4 ARRIBA other 7 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_4W1DBAN4 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_4W1DBAN4 ARRIBA in-frame 24 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +1:13782831 1:13769039 PRDM2--PRDM2 BS_4W1DBAN4 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4W1DBAN4 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:19814346 7:19811245 AC004543.1--TMEM196(37647)/AC004543.1(2440) BS_4W68NV3M ARRIBA other 20 1 medium [],duplication AC004543.1 NA TMEM196 AC004543.1 NA NA NA NA NA +7:7267401 7:7234304 AC005532.1--C1GALT1 BS_4W68NV3M ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4W68NV3M ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4W68NV3M ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +6:133456534 6:133507321 AL024497.2--TARID BS_4W68NV3M ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr6:0.05Mb],LOCAL_REARRANGEMENT:-:[45647]],duplication AL024497.2 NA TARID NA NA NA NA NA NA +7:118324575 7:118264813 ANKRD7--ANKRD7 BS_4W68NV3M ARRIBA other 17 2 high [SELFIE,INTRACHROMOSOMAL[chr7:0.28Mb]],inversion/3'-3' ANKRD7 NA ANKRD7 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_4W68NV3M ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_4W68NV3M ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100547744 CAVIN4--MSANTD3-TMEFF1 BS_4W68NV3M ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_4W68NV3M ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_4W68NV3M ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_4W68NV3M ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100547744 CAVIN4--TMEFF1 BS_4W68NV3M ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100561397 CAVIN4--TMEFF1 BS_4W68NV3M ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +5:140194652 7:98741488 CYSTM1--NPTX2(111620)/RNU6-393P(53230) BS_4W68NV3M ARRIBA frameshift 4 0 high [],translocation CYSTM1 NA NPTX2 RNU6-393P NA NA NA NA NA +12:109880272 8:145072052 GLTP--C8orf33(16022) BS_4W68NV3M ARRIBA frameshift 2 0 medium [],translocation GLTP NA C8orf33 NA NA NA NA NA NA +14:59458857 14:59551436 GPR135--CCDC175 BS_4W68NV3M ARRIBA other 1 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_4W68NV3M ARRIBA frameshift 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +10:49885203 10:42791627 PARG--BMS1 BS_4W68NV3M ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr10:6.98Mb]],inversion PARG NA BMS1 NA NA NA NA NA NA +7:153749008 7:149892398 PAXBP1P1(299133)/DPP6(138089)--AC092681.1 BS_4W68NV3M ARRIBA other 3 0 medium [],inversion PAXBP1P1 DPP6 AC092681.1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_4W68NV3M ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4W68NV3M ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:114947320 1:114923449 SYCP1--SYCP1 BS_4W68NV3M ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4Y6BCYK5 ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4Y6BCYK5 ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:48809642 2:48799306 AC009975.1--ELOBP3(18411)/AC009975.1(10034) BS_4Y6BCYK5 ARRIBA other 1 1 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_4Y6BCYK5 ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_4Y6BCYK5 ARRIBA other 8 2 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +3:178748404 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_4Y6BCYK5 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140781693 KIAA1549--BRAF BS_4Y6BCYK5 ARRIBA in-frame 9 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_4Y6BCYK5 ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +6:52995906 14:49862669 RN7SK--RN7SL2 BS_4Y6BCYK5 STARFUSION other 5 13 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +6:52995906 14:49862842 RN7SK--RN7SL2 BS_4Y6BCYK5 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +14:49862574 6:52995630 RN7SL2--7SK BS_4Y6BCYK5 STARFUSION other 5 14 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862559 6:52995632 RN7SL2--7SK BS_4Y6BCYK5 STARFUSION other 4 14 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4Y6BCYK5 ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4Z2F4P9N ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4Z2F4P9N ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:49586761 14:20343400 AL139099.5--AL355075.4 BS_4Z2F4P9N STARFUSION other 4 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586759 14:20343401 AL139099.5--RPPH1 BS_4Z2F4P9N STARFUSION other 4 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +3:178801793 3:178965496 KCNMB2-AS1--KCNMB2-AS1(105091)/ZMAT3(51727) BS_4Z2F4P9N ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +14:49586761 14:20343400 RN7SL1--AL355075.4 BS_4Z2F4P9N STARFUSION other 4 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586759 14:20343401 RN7SL1--RPPH1 BS_4Z2F4P9N STARFUSION other 4 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4Z2F4P9N ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_4Z2F4P9N ARRIBA other 3 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +5:131521390 5:137441060 AC008695.1--SPOCK1 BS_51RA1PGE ARRIBA frameshift 7 2 high [],inversion/5'-5' AC008695.1 NA SPOCK1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_51RA1PGE ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_51RA1PGE ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:31767570 15:29874836 AC026951.1--TJP1 BS_51RA1PGE ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr15:1.80Mb]],duplication AC026951.1 NA TJP1 NA NA NA NA NA NA +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_51RA1PGE ARRIBA frameshift 1 0 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +18:74520591 18:73364543 CNDP2--AC105243.1(14665)/AC079070.1(346786) BS_51RA1PGE ARRIBA other 8 2 medium [],duplication CNDP2 NA AC105243.1 AC079070.1 TumorSuppressorGene NA NA NA NA +8:89436506 8:89725641 KRT8P4(21435)/AF117829.1(172903)--AF117829.1 BS_51RA1PGE ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +5:131521390 5:137441060 RAPGEF6--SPOCK1 BS_51RA1PGE ARRIBA frameshift 7 2 high [INTRACHROMOSOMAL[chr5:5.34Mb]],inversion/5'-5' RAPGEF6 NA SPOCK1 NA NA NA NA NA NA +14:49862559 14:20343397 RN7SL2--AL355075.4 BS_51RA1PGE STARFUSION other 7 9 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862578 14:20343401 RN7SL2--AL355075.4 BS_51RA1PGE STARFUSION other 6 9 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862578 14:20343401 RN7SL2--RPPH1 BS_51RA1PGE STARFUSION other 6 9 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862555 14:20343401 RN7SL2--RPPH1 BS_51RA1PGE STARFUSION other 6 9 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +3:78617635 3:82077196 ROBO1--LINC02008 BS_51RA1PGE ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr3:2.22Mb]],duplication/5'-5' ROBO1 NA LINC02008 NA TumorSuppressorGene, Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_51RA1PGE ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:143901961 7:121928156 TCAF1--PTPRZ1 BS_51RA1PGE ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:21.79Mb]],inversion TCAF1 NA PTPRZ1 NA NA NA NA NA NA +5:139561815 5:138206684 UBE2D2--CDC23 BS_51RA1PGE ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr5:1.31Mb]],inversion UBE2D2 NA CDC23 NA Oncogene NA NA NA NA +5:139561815 5:138213063 UBE2D2--CDC23 BS_51RA1PGE ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr5:1.31Mb]],inversion UBE2D2 NA CDC23 NA Oncogene NA NA NA NA +5:139561815 5:147558441 UBE2D2--DPYSL3(48385)/JAKMIP2-AS1(1553) BS_51RA1PGE ARRIBA frameshift 20 0 high [],deletion UBE2D2 NA DPYSL3 JAKMIP2-AS1 Oncogene NA NA NA NA +15:82400716 15:31766111 UBE2Q2P2--AC026951.1 BS_51RA1PGE ARRIBA other 9 0 high [INTRACHROMOSOMAL[chr15:50.59Mb]],duplication/5'-5' UBE2Q2P2 NA AC026951.1 NA NA NA NA NA NA +18:199316 18:56214196 USP14--AC006305.1(22934)/TXNL1(383012) BS_51RA1PGE ARRIBA frameshift 10 0 high [],deletion USP14 NA AC006305.1 TXNL1 NA NA NA NA NA +8:17186425 8:17098458 ZDHHC2--MICU3 BS_51RA1PGE ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr8:0.03Mb],LOCAL_REARRANGEMENT:+:[33385]],duplication ZDHHC2 NA MICU3 NA TumorSuppressorGene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_52426AMF ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_52426AMF ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:48809642 2:48799306 AC009975.1--ELOBP3(18411)/AC009975.1(10034) BS_52426AMF ARRIBA other 1 0 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_52426AMF ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_52426AMF ARRIBA in-frame 3 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_52426AMF ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +12:132247910 12:132262625 GALNT9--GALNT9 BS_52426AMF ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing GALNT9 NA GALNT9 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_52426AMF ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_52426AMF ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_52426AMF ARRIBA other 7 0 low [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_52426AMF ARRIBA other 3 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_52426AMF ARRIBA in-frame 4 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +12:19354002 12:19269770 PLEKHA5--PLEKHA5 BS_52426AMF ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.25Mb]],duplication/non-canonical_splicing PLEKHA5 NA PLEKHA5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_52426AMF ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_52426AMF ARRIBA other 5 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +1:216321883 1:216473897 USH2A--USH2A(50501)/ESRRG(29349) BS_52426AMF ARRIBA frameshift 2 0 medium [],duplication USH2A NA USH2A ESRRG NA NA NA Oncogene, TranscriptionFactor NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_52C576HH ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_52C576HH ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_52C576HH ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +1:19222624 1:19286372 EMC1--AKR7A3 BS_52C576HH ARRIBA in-frame 3 4 medium [CCLE,INTRACHROMOSOMAL[chr1:0.03Mb],LOCAL_REARRANGEMENT:-:[31006]],duplication EMC1 NA AKR7A3 NA NA NA NA NA NA +1:19222624 1:19301357 EMC1--AL035413.2(3454)/AKR7A2(2608) BS_52C576HH ARRIBA frameshift 8 0 medium [],duplication EMC1 NA AL035413.2 AKR7A2 NA NA NA NA NA +1:60595538 1:60600250 LINC01748--LINC01748 BS_52C576HH ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing LINC01748 NA LINC01748 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_52C576HH ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:122498827 6:117320030 ZCCHC8--ROS1 BS_52C576HH ARRIBA in-frame 10 1 high [Cosmic,ChimerKB,INTERCHROMOSOMAL[chr12--chr6]],translocation ZCCHC8 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_52DAPP1Y ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_52DAPP1Y ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_52DAPP1Y ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_52DAPP1Y ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_52DAPP1Y ARRIBA in-frame 6 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +8:89418044 8:89725641 KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_52DAPP1Y ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_52DAPP1Y ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +22:21008779 22:21013184 AC002472.2--AC002472.3 BS_52MPKTJH ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[1931]],duplication AC002472.2 NA AC002472.3 NA NA NA NA NA NA +14:72594327 14:72619984 AC004828.1--DPF3 BS_52MPKTJH ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_52MPKTJH ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_52MPKTJH ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +18:65862917 18:65809704 CDH7--CDH7 BS_52MPKTJH ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_52MPKTJH ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:82687669 12:82456727 TMTC2--METTL25 BS_52MPKTJH ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr12:0.21Mb]],duplication TMTC2 NA METTL25 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_53CTGDQG ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_53CTGDQG ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:32106124 5:32143880 AC025178.1--GOLPH3 BS_53CTGDQG ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[2763]],duplication AC025178.1 NA GOLPH3 NA NA NA NA NA NA +5:32121495 5:32143880 AC025178.1--GOLPH3 BS_53CTGDQG ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[2763]],duplication AC025178.1 NA GOLPH3 NA NA NA NA NA NA +11:26189330 11:26309645 AC099687.1--ANO3 BS_53CTGDQG STARFUSION other 14 0 NA [INTRACHROMOSOMAL[chr11:0.10Mb]] AC099687.1 NA ANO3 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_53CTGDQG ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_53GQKVEX ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_53GQKVEX ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_53GQKVEX ARRIBA other 14 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_53GQKVEX STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +7:138867975 7:140781693 KIAA1549--BRAF BS_53GQKVEX ARRIBA in-frame 12 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138867975 7:140781693 KIAA1549--BRAF BS_53GQKVEX STARFUSION in-frame 12 1 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_53GQKVEX ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_53M8PP88 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_53M8PP88 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_53M8PP88 ARRIBA other 4 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_53M8PP88 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_53M8PP88 ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +3:113433565 3:113506605 CFAP44--SPICE1 BS_53M8PP88 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA +4:161455004 4:161500134 FSTL5--FSTL5 BS_53M8PP88 ARRIBA frameshift 22 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +22:46296931 22:46287073 GTSE1--TTC38 BS_53M8PP88 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[2733]],duplication GTSE1 NA TTC38 NA NA NA NA NA TCGAFusion +17:77776329 14:81278739 LINC01987(47770)/LINC01973(102698)--STON2 BS_53M8PP88 ARRIBA other 4 0 medium [],translocation LINC01987 LINC01973 STON2 NA NA NA NA NA NA +14:60019260 14:59997656 LRRC9--LRRC9 BS_53M8PP88 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_53M8PP88 ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_53M8PP88 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_53M8PP88 ARRIBA in-frame 10 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_53M8PP88 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:93822563 8:93755020 TMEM67(3329)/AC084346.1(11891)--TMEM67 BS_53M8PP88 ARRIBA other 1 0 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_55JW3HFM ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_55JW3HFM ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_55JW3HFM ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +7:127242695 7:127243515 GRM8--GRM8 BS_55JW3HFM ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_55JW3HFM ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_55JW3HFM ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_55JW3HFM ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:51794641 12:51786542 SCN8A--SCN8A BS_55JW3HFM ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.22Mb]],duplication/non-canonical_splicing SCN8A NA SCN8A NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_55P8HPYD ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_55P8HPYD ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:31707306 10:31461037 AL161935.3--ZEB1 BS_55P8HPYD ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.16Mb]],inversion AL161935.3 NA ZEB1 NA NA CosmicCensus, TranscriptionFactor NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_55P8HPYD ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +5:61755944 5:61686883 C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_55P8HPYD ARRIBA other 1 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_55P8HPYD ARRIBA in-frame 2 0 low [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +10:6220865 10:79312642 PFKFB3--ZMIZ1 BS_55P8HPYD ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr10:72.81Mb]],deletion PFKFB3 NA ZMIZ1 NA NA Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_55P8HPYD ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_593HEWBF ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_593HEWBF ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:150220245 7:154446214 AC092666.1(143590)/ACTR3C(23671)--DPP6 BS_593HEWBF ARRIBA other 3 0 high [],inversion AC092666.1 ACTR3C DPP6 NA NA NA NA NA NA +7:129225439 7:149494503 AHCYL2--ZNF746 BS_593HEWBF ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:20.04Mb]],inversion AHCYL2 NA ZNF746 NA NA TranscriptionFactor NA NA NA +7:140787548 7:90479718 BRAF--AC002456.2 BS_593HEWBF ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:50.23Mb]],deletion/5'-5' BRAF NA AC002456.2 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +7:140787548 7:90479718 BRAF--AC006153.1 BS_593HEWBF ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:50.21Mb]],deletion/5'-5' BRAF NA AC006153.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +7:140787548 7:90479718 BRAF--CDK14 BS_593HEWBF ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:49.51Mb]],deletion/5'-5' BRAF NA CDK14 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase NA NA NA +7:140787548 7:90479718 BRAF--CLDN12 BS_593HEWBF ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:50.21Mb]],deletion/5'-5' BRAF NA CLDN12 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +7:137846462 7:128030996 DGKI--LRRC4 BS_593HEWBF ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr7:9.35Mb]],deletion DGKI NA LRRC4 NA NA TumorSuppressorGene NA NA NA +7:37921208 7:69172745 EPDR1--RNU6-832P(47369)/AC069280.1(15088) BS_593HEWBF ARRIBA frameshift 29 1 high [],inversion EPDR1 NA RNU6-832P AC069280.1 NA NA NA NA NA +7:30435998 7:8986557 NOD1--AC009500.1(47188)/AC004852.2(96000) BS_593HEWBF ARRIBA frameshift 2 1 high [],deletion NOD1 NA AC009500.1 AC004852.2 Oncogene NA NA NA NA +7:95120832 7:8885817 PPP1R9A--NXPH1(132854)/AC009500.1(52970) BS_593HEWBF ARRIBA frameshift 3 0 high [],duplication PPP1R9A NA NXPH1 AC009500.1 NA NA NA NA NA +7:711329 7:47369621 PRKAR1B--TNS3 BS_593HEWBF ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:46.55Mb]],duplication PRKAR1B NA TNS3 NA NA NA NA NA NA +7:137343439 7:139376062 PTN--C7orf55-LUC7L2 BS_593HEWBF ARRIBA other 69 5 high [INTRACHROMOSOMAL[chr7:2.00Mb]],inversion PTN NA C7orf55-LUC7L2 NA Oncogene NA NA NA NA +7:137343439 7:139376062 PTN--C7orf55-LUC7L2 BS_593HEWBF STARFUSION other 74 5 NA [INTRACHROMOSOMAL[chr7:2.00Mb]] PTN NA C7orf55-LUC7L2 NA Oncogene NA NA NA NA +7:137343439 7:139376062 PTN--LUC7L2 BS_593HEWBF ARRIBA other 69 5 high [INTRACHROMOSOMAL[chr7:2.00Mb]],inversion PTN NA LUC7L2 NA Oncogene NA NA NA NA +7:137343439 7:139376062 PTN--LUC7L2 BS_593HEWBF STARFUSION other 74 5 NA [INTRACHROMOSOMAL[chr7:2.00Mb]] PTN NA LUC7L2 NA Oncogene NA NA NA NA +7:121873557 7:129379641 PTPRZ1--AHCYL2 BS_593HEWBF ARRIBA frameshift 143 31 high [INTRACHROMOSOMAL[chr7:7.16Mb]],deletion PTPRZ1 NA AHCYL2 NA NA NA NA NA NA +7:121873557 7:129379638 PTPRZ1--AHCYL2 BS_593HEWBF ARRIBA frameshift 48 31 high [INTRACHROMOSOMAL[chr7:7.16Mb]],deletion PTPRZ1 NA AHCYL2 NA NA NA NA NA NA +7:121873557 7:129389056 PTPRZ1--AHCYL2 BS_593HEWBF ARRIBA in-frame 1 3 medium [INTRACHROMOSOMAL[chr7:7.16Mb]],deletion PTPRZ1 NA AHCYL2 NA NA NA NA NA NA +7:121873557 7:129397222 PTPRZ1--AHCYL2 BS_593HEWBF ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:7.16Mb]],deletion PTPRZ1 NA AHCYL2 NA NA NA NA NA NA +7:121873557 7:129379641 PTPRZ1--AHCYL2 BS_593HEWBF STARFUSION frameshift 152 41 NA [INTRACHROMOSOMAL[chr7:7.16Mb]] PTPRZ1 NA AHCYL2 NA NA NA NA NA NA +7:121873557 7:129379638 PTPRZ1--AHCYL2 BS_593HEWBF STARFUSION frameshift 53 41 NA [INTRACHROMOSOMAL[chr7:7.16Mb]] PTPRZ1 NA AHCYL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_593HEWBF ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:94382592 14:94619306 SERPINA1--AL049839.2 BS_593HEWBF STARFUSION other 17 0 NA [INTRACHROMOSOMAL[chr14:0.20Mb]] SERPINA1 NA AL049839.2 NA Oncogene NA NA NA NA +7:127991056 7:137849356 SND1--DGKI(2264)/CREB3L2(25623) BS_593HEWBF ARRIBA frameshift 5 0 high [],deletion SND1 NA DGKI CREB3L2 CosmicCensus NA NA CosmicCensus, Oncogene, TranscriptionFactor NA +7:47396800 7:140783157 TNS3--BRAF BS_593HEWBF ARRIBA in-frame 79 4 high [INTRACHROMOSOMAL[chr7:93.14Mb]],duplication TNS3 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:47396800 7:140783157 TNS3--BRAF BS_593HEWBF STARFUSION in-frame 82 4 NA [INTRACHROMOSOMAL[chr7:93.14Mb]] TNS3 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +6:52995909 14:20343401 7SK--AL355075.4 BS_5965SFPZ STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL355075.4 NA NA NA NA NA NA +6:52995910 14:20343399 7SK--RPPH1 BS_5965SFPZ STARFUSION other 5 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_5965SFPZ ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_5965SFPZ ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:5719432 9:5914062 AL136980.1--KIAA2026 BS_5965SFPZ ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr9:0.16Mb]],duplication AL136980.1 NA KIAA2026 NA NA NA NA NA NA +14:49586855 6:52995794 AL139099.5--7SK BS_5965SFPZ STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +14:49586760 6:52995793 AL139099.5--7SK BS_5965SFPZ STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +14:49586752 6:52995791 AL139099.5--7SK BS_5965SFPZ STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +1:247640429 1:247860617 AL390860.1--TRIM58 BS_5965SFPZ STARFUSION other 12 3 NA [INTRACHROMOSOMAL[chr1:0.11Mb]] AL390860.1 NA TRIM58 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_5965SFPZ ARRIBA other 7 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_5965SFPZ ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_5965SFPZ ARRIBA other 14 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_5965SFPZ ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +14:49586757 6:52995792 RN7SL1--7SK BS_5965SFPZ STARFUSION other 5 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_5965SFPZ ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:123059473 17:81844094 HSPA8--P4HB BS_59ZJWJTF ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr11--chr17]],translocation HSPA8 NA P4HB NA NA NA NA NA NA +8:23309667 5:138824675 LOXL2--CTNNA1 BS_59ZJWJTF ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr8--chr5]],translocation LOXL2 NA CTNNA1 NA Oncogene Oncogene NA NA NA +2:167293334 2:167818672 AC073050.1--AC016723.1 BS_5AF6ZNJF ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr2:0.26Mb]],deletion/5'-5' AC073050.1 NA AC016723.1 NA NA NA NA NA NA +2:218400157 2:218216635 CTDSP1--HMGB1P9(15247)/ARPC2(459) BS_5AF6ZNJF ARRIBA frameshift 4 0 medium [],duplication CTDSP1 NA HMGB1P9 ARPC2 NA NA NA NA NA +9:126450032 11:43405876 MVB12B--TTC17 BS_5AF6ZNJF ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr9--chr11]],translocation MVB12B NA TTC17 NA NA NA NA NA NA +17:31163376 17:31071912 NF1--AC138207.8 BS_5AF6ZNJF ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr17:0.00Mb],LOCAL_REARRANGEMENT:+:[1800]],duplication NF1 NA AC138207.8 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +9:70681506 9:70784279 TRPM3--TRPM3 BS_5AF6ZNJF ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_5AF6ZNJF ARRIBA other 2 0 medium [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_5CMGN56B ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_5CMGN56B ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_5CMGN56B ARRIBA other 8 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +2:139368484 2:139339254 AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_5CMGN56B ARRIBA other 7 0 high [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_5CMGN56B ARRIBA other 3 0 low [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +5:61755944 5:61703866 C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_5CMGN56B ARRIBA other 1 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_5CMGN56B ARRIBA other 9 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_5CMGN56B ARRIBA other 7 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178859489 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_5CMGN56B ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +1:149607554 1:143974544 LINC00869--FAM72C(2579)/SRGAP2D(543) BS_5CMGN56B ARRIBA other 2 0 medium [],duplication LINC00869 NA FAM72C SRGAP2D NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_5CMGN56B ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_5CMGN56B ARRIBA other 7 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +11:116067120 3:185931852 AP000797.1(115629)/LINC02151(429779)--TRA2B BS_5CTVXVRX ARRIBA other 4 0 high [],translocation AP000797.1 LINC02151 TRA2B NA NA NA NA NA NA +1:28246576 1:28605460 ATPIF1--TAF12 BS_5CTVXVRX ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr1:0.34Mb]],duplication/3'-3' ATPIF1 NA TAF12 NA NA NA NA NA NA +11:22755953 8:52686967 GAS2--RB1CC1 BS_5CTVXVRX ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr11--chr8]],translocation GAS2 NA RB1CC1 NA NA TumorSuppressorGene, Oncogene NA NA NA +11:22756750 8:52833102 GAS2--RB1CC1(87259)/NPBWR1(105329) BS_5CTVXVRX ARRIBA other 8 1 medium [],translocation GAS2 NA RB1CC1 NPBWR1 NA TumorSuppressorGene, Oncogene NA NA NA +5:40798063 15:41342386 PRKAA1--NUSAP1 BS_5CTVXVRX ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr5--chr15]],translocation PRKAA1 NA NUSAP1 NA TumorSuppressorGene, Kinase NA NA NA NA +5:40798063 15:41332156 PRKAA1--OIP5 BS_5CTVXVRX ARRIBA frameshift 8 2 high [INTERCHROMOSOMAL[chr5--chr15]],translocation/5'-5' PRKAA1 NA OIP5 NA TumorSuppressorGene, Kinase NA NA NA NA +18:55403454 6:167359412 TCF4--TCP10 BS_5CTVXVRX ARRIBA in-frame 7 0 medium [INTERCHROMOSOMAL[chr18--chr6]],translocation TCF4 NA TCP10 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA +18:55401689 6:167359412 TCF4--TCP10 BS_5CTVXVRX ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr18--chr6]],translocation TCF4 NA TCP10 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA +3:185937825 11:116067205 TRA2B--AP000797.1(115714)/LINC02151(429694) BS_5CTVXVRX ARRIBA frameshift 12 0 high [],translocation TRA2B NA AP000797.1 LINC02151 NA NA NA NA NA +3:185937825 11:115789344 TRA2B--AP002991.1 BS_5CTVXVRX ARRIBA frameshift 10 1 high [INTERCHROMOSOMAL[chr3--chr11]],translocation/5'-5' TRA2B NA AP002991.1 NA NA NA NA NA NA +3:196391813 2:10071646 UBXN7--CYS1 BS_5CTVXVRX ARRIBA frameshift 4 3 high [INTERCHROMOSOMAL[chr3--chr2]],translocation/5'-5' UBXN7 NA CYS1 NA NA NA NA NA NA +19:57813294 19:56613812 ZNF552--AC007228.1 BS_5CTVXVRX ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr19:1.19Mb]],inversion ZNF552 NA AC007228.1 NA TranscriptionFactor NA NA NA NA +19:57780108 1:76679414 ZNF586--AC104458.1(42075)/TPI1P1(20375) BS_5CTVXVRX ARRIBA other 10 1 medium [],translocation ZNF586 NA AC104458.1 TPI1P1 TranscriptionFactor NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_5GNQC2FF ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +11:104918113 11:105268311 AP002004.1--AP003181.1 BS_5GNQC2FF ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.24Mb]],duplication AP002004.1 NA AP003181.1 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_5GNQC2FF ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_5JM573JC ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_5JM573JC ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +12:85424204 12:85342472 AC131532.1(81292)/AC126471.1(143674)--AC131532.1 BS_5JM573JC ARRIBA other 5 0 medium [],duplication AC131532.1 AC126471.1 AC131532.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_5JM573JC ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_5K3R0F5D ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_5K3R0F5D ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_5K3R0F5D ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_5K3R0F5D ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_5K3R0F5D ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_5K3R0F5D ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_5K3R0F5D ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_5K3R0F5D ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_5K3R0F5D ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_5K3R0F5D ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_5K3R0F5D ARRIBA in-frame 35 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +4:172348689 4:172229656 GALNTL6--GALNTL6 BS_5K3R0F5D ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.23Mb]],duplication/non-canonical_splicing GALNTL6 NA GALNTL6 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_5K3R0F5D ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_5K3R0F5D ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_5K3R0F5D ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_5K3R0F5D ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_5K3R0F5D ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_5K3R0F5D ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_5K3R0F5D ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_5K3R0F5D ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_5K3R0F5D ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +14:46873433 14:47035304 MDGA2--MDGA2 BS_5K3R0F5D ARRIBA in-frame 4 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_5K3R0F5D ARRIBA other 5 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_5K3R0F5D ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_5K3R0F5D ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_5K3R0F5D ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_5K3R0F5D ARRIBA other 2 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_5NWDARXG ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_5NWDARXG ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +6:19534887 6:19088071 AL022068.1--MIR548A1HG(414070)/AL589647.1(55624) BS_5NWDARXG ARRIBA other 2 0 high [],deletion AL022068.1 NA MIR548A1HG AL589647.1 NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_5NWDARXG ARRIBA other 8 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_5NWDARXG ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_5NWDARXG ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_5NWDARXG ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +18:8088851 18:7761010 PTPRM--PTPRM BS_5NWDARXG ARRIBA frameshift 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.84Mb]],inversion/3'-3' PTPRM NA PTPRM NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_5NWDARXG ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_5NWDARXG ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_5P1TN10Z ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_5P1TN10Z ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_5P1TN10Z ARRIBA frameshift 26 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +21:24441913 21:24303153 LINC01684--AP000470.1(114811)/LINC01689(1397) BS_5P1TN10Z ARRIBA other 2 0 medium [],duplication LINC01684 NA AP000470.1 LINC01689 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_5P1TN10Z ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +22:41301772 22:29957036 ZC3H7B--MTMR3 BS_5P1TN10Z ARRIBA other 10 0 high [INTRACHROMOSOMAL[chr22:11.27Mb]],duplication ZC3H7B NA MTMR3 NA NA Oncogene NA NA NA +22:41301772 22:29957036 ZC3H7B--MTMR3 BS_5P1TN10Z STARFUSION other 9 0 NA [INTRACHROMOSOMAL[chr22:11.27Mb]] ZC3H7B NA MTMR3 NA NA Oncogene NA NA NA +6:52995921 14:49862667 7SK--RN7SL2 BS_5P3CZQV8 STARFUSION other 8 7 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995911 14:49862665 7SK--RN7SL2 BS_5P3CZQV8 STARFUSION other 7 7 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_5P3CZQV8 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_5P3CZQV8 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:108951640 20:2749625 CLCC1--EBF4 BS_5P3CZQV8 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr1--chr20]],translocation CLCC1 NA EBF4 NA NA TranscriptionFactor NA NA NA +17:31206371 17:32494915 NF1--MYO1D BS_5P3CZQV8 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr17:1.11Mb]],inversion NF1 NA MYO1D NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_5P3CZQV8 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_5PEFNDCY ARRIBA other 52 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_5PEFNDCY ARRIBA other 52 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:48809641 2:48809118 AC009975.1--ELOBP3(28223)/AC009975.1(222) BS_5PEFNDCY ARRIBA other 3 5 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_5PEFNDCY ARRIBA other 16 3 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +15:46824451 15:46684302 AC073941.1(19607)/AC073941.2(3075)--AC073941.1 BS_5PEFNDCY ARRIBA other 1 5 medium [],duplication AC073941.1 AC073941.2 AC073941.1 NA NA NA NA NA NA +1:219273549 1:219193082 AC096642.1(162)/AL513283.1(135974)--LYPLAL1 BS_5PEFNDCY ARRIBA other 1 3 high [],duplication AC096642.1 AL513283.1 LYPLAL1 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_5PEFNDCY ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_5PEFNDCY ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_5PEFNDCY ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_5PEFNDCY ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_5PEFNDCY ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46474501 20:46506458 AL031686.1--ZNF334 BS_5PEFNDCY ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46474501 20:46503097 AL031686.1--ZNF334 BS_5PEFNDCY ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +1:171247581 1:170807604 AL445673.1--PRRX1(68185)/MROH9(127867) BS_5PEFNDCY ARRIBA other 2 3 medium [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_5PEFNDCY ARRIBA other 35 6 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_5PEFNDCY ARRIBA in-frame 44 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_5PEFNDCY ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +10:12998338 10:13007105 CCDC3--CCDC3 BS_5PEFNDCY ARRIBA frameshift 6 1 medium [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication CCDC3 NA CCDC3 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_5PEFNDCY ARRIBA other 79 7 high [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_5PEFNDCY ARRIBA in-frame 9 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_5PEFNDCY ARRIBA frameshift 8 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_5PEFNDCY ARRIBA in-frame 30 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +4:161759411 4:161776074 FSTL5--FSTL5 BS_5PEFNDCY ARRIBA in-frame 27 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_5PEFNDCY STARFUSION other 81 57 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_5PEFNDCY ARRIBA frameshift 27 5 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_5PEFNDCY ARRIBA frameshift 53 8 high [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_5PEFNDCY ARRIBA in-frame 15 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_5PEFNDCY ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +3:178859489 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_5PEFNDCY ARRIBA other 2 1 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138840133 7:140781693 KIAA1549--BRAF BS_5PEFNDCY ARRIBA in-frame 14 4 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +17:45996664 17:45978375 MAPT--MAPT BS_5PEFNDCY ARRIBA frameshift 17 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +20:46474501 20:46496952 MKRN7P--AL031686.1(221)/ZNF334(2678) BS_5PEFNDCY ARRIBA other 3 0 medium [],duplication MKRN7P NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA +20:46474501 20:46504740 MKRN7P--ZNF334 BS_5PEFNDCY ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46474501 20:46506458 MKRN7P--ZNF334 BS_5PEFNDCY ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46474501 20:46503097 MKRN7P--ZNF334 BS_5PEFNDCY ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_5PEFNDCY ARRIBA other 5 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +8:124555742 8:124558832 MTSS1--MTSS1 BS_5PEFNDCY ARRIBA frameshift 23 3 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +15:76009200 15:76052983 NRG4--NRG4 BS_5PEFNDCY ARRIBA frameshift 16 2 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +21:39867510 21:39765535 PCP4--IGSF5 BS_5PEFNDCY ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr21:0.07Mb],LOCAL_REARRANGEMENT:+:[65221]],duplication PCP4 NA IGSF5 NA NA NA NA NA NA +7:77951712 7:77920279 PHTF2--PHTF2 BS_5PEFNDCY ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA +10:94171496 10:94017339 PLCE1--PIPSL(55799)/PLCE1(13473) BS_5PEFNDCY ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_5PEFNDCY ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_5PEFNDCY ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_5PEFNDCY ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19677724 13:19837821 PSPC1--ZMYM5 BS_5PEFNDCY ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_5PEFNDCY ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +12:70656704 12:70662605 PTPRR--PTPRR BS_5PEFNDCY ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_5PEFNDCY ARRIBA frameshift 31 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_5PEFNDCY ARRIBA other 52 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161863062 2:161854970 SLC4A10--SLC4A10 BS_5PEFNDCY ARRIBA in-frame 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +8:52142930 8:52166986 ST18--ST18 BS_5PEFNDCY ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_5PEFNDCY ARRIBA other 7 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_5PEFNDCY ARRIBA other 12 1 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +9:72805510 9:72742444 TMC1--TMC1 BS_5PEFNDCY ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.31Mb]],duplication/non-canonical_splicing TMC1 NA TMC1 NA NA NA NA NA NA +15:76137895 15:76112018 TMEM266--TMEM266 BS_5PEFNDCY ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.17Mb]],duplication/non-canonical_splicing TMEM266 NA TMEM266 NA NA NA NA NA NA +3:167529052 3:167658326 WDR49--WDR49(4343)/PDCD10(24972) BS_5PEFNDCY ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +8:31096850 8:31083699 WRN--WRN BS_5PEFNDCY ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.14Mb]],duplication/non-canonical_splicing WRN NA WRN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_5PJCHF6V ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_5PJCHF6V ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_5PJCHF6V ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_5PJCHF6V ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_5PJCHF6V ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +14:34916589 14:34921713 AL121603.2(40130)/SRP54-AS1(4269)--SRP54-AS1 BS_5PJCHF6V ARRIBA other 2 0 low [],duplication AL121603.2 SRP54-AS1 SRP54-AS1 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_5PJCHF6V ARRIBA other 4 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +11:100859625 11:121987589 ARHGAP42--SORL1(353896)/RNU6-256P(16766) BS_5PJCHF6V ARRIBA frameshift 3 1 high [],deletion ARHGAP42 NA SORL1 RNU6-256P NA Oncogene NA NA NA +11:119112392 11:112010034 C2CD2L--DIXDC1 BS_5PJCHF6V ARRIBA frameshift 2 2 high [INTRACHROMOSOMAL[chr11:7.08Mb]],duplication C2CD2L NA DIXDC1 NA NA NA NA NA NA +11:119112392 11:112016691 C2CD2L--DIXDC1 BS_5PJCHF6V ARRIBA in-frame 1 1 high [INTRACHROMOSOMAL[chr11:7.08Mb]],duplication C2CD2L NA DIXDC1 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_5PJCHF6V ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +6:83924592 6:83864175 CYB5R4--CYB5R4 BS_5PJCHF6V ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA +11:84534570 11:2587570 DLG2--KCNQ1 BS_5PJCHF6V ARRIBA in-frame 6 0 high [INTRACHROMOSOMAL[chr11:80.61Mb]],inversion DLG2 NA KCNQ1 NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_5PJCHF6V ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_5PJCHF6V ARRIBA frameshift 14 4 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +11:94485924 11:124325803 MRE11--AP001804.1 BS_5PJCHF6V ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr11:29.83Mb]],duplication MRE11 NA AP001804.1 NA Oncogene NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_5PJCHF6V ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +11:3165216 11:81825479 OSBPL5--MTND6P25(269054)/AP002802.2(16956) BS_5PJCHF6V ARRIBA other 13 0 high [],inversion OSBPL5 NA MTND6P25 AP002802.2 NA NA NA NA NA +13:19709542 13:19835689 PSPC1--ZMYM5 BS_5PJCHF6V ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_5PJCHF6V ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +11:124865737 11:121758552 ROBO3--SORL1(124859)/RNU6-256P(245803) BS_5PJCHF6V ARRIBA frameshift 5 1 high [],inversion ROBO3 NA SORL1 RNU6-256P NA Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_5PJCHF6V ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_5PJCHF6V ARRIBA frameshift 25 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +15:42585637 15:42558198 STARD9--HAUS2 BS_5PJCHF6V ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:+:[5665]],duplication STARD9 NA HAUS2 NA NA NA NA NA NA +15:42585637 15:42559339 STARD9--HAUS2 BS_5PJCHF6V ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:+:[5665]],duplication STARD9 NA HAUS2 NA NA NA NA NA NA +17:21000941 14:49862816 USP22--RN7SL2 BS_5PJCHF6V STARFUSION other 15 1 NA [FA_CancerSupp,INTERCHROMOSOMAL[chr17--chr14]] USP22 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_5PV5N4HQ ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_5PV5N4HQ ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_5PV5N4HQ ARRIBA other 6 2 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_5PV5N4HQ ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_5PV5N4HQ ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +6:118813102 6:118856545 AL359634.1(29682)/MCM9(340)--MCM9 BS_5PV5N4HQ ARRIBA other 3 0 high [],duplication AL359634.1 MCM9 MCM9 NA NA TumorSuppressorGene TumorSuppressorGene NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_5PV5N4HQ ARRIBA other 9 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178859489 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_5PV5N4HQ ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_5PV5N4HQ ARRIBA in-frame 6 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +14:44797930 14:44393738 LINC02302(15101)/DOCK11P1(62386)--AL161752.1 BS_5PV5N4HQ ARRIBA other 4 0 medium [],deletion LINC02302 DOCK11P1 AL161752.1 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_5PV5N4HQ ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_5PV5N4HQ ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:81715966 17:44675647 ZFAND1--MEIOC BS_5PV5N4HQ ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr8--chr17]],translocation/5'-5' ZFAND1 NA MEIOC NA NA NA NA NA NA +8:17134261 8:17077783 AC079193.2--MICU3 BS_5VQP0E6K ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr8:0.01Mb],LOCAL_REARRANGEMENT:+:[8537]],duplication AC079193.2 NA MICU3 NA NA NA NA NA NA +8:17134261 8:17098458 AC079193.2--MICU3 BS_5VQP0E6K ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:0.01Mb],LOCAL_REARRANGEMENT:+:[8537]],duplication AC079193.2 NA MICU3 NA NA NA NA NA NA +7:110432811 7:109841570 AC092167.1--AC073387.2(77213)/EIF3IP1(117648) BS_5VQP0E6K ARRIBA other 8 2 high [],deletion AC092167.1 NA AC073387.2 EIF3IP1 NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_5VQP0E6K ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +20:46496711 20:46504740 AL031686.1--ZNF334 BS_5VQP0E6K ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46481050 20:46506458 AL031686.1--ZNF334 BS_5VQP0E6K ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46485529 20:46504740 AL031686.1--ZNF334 BS_5VQP0E6K ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +14:89870643 14:89932627 EFCAB11--EFCAB11 BS_5VQP0E6K ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_5VQP0E6K ARRIBA frameshift 30 3 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +4:107590329 4:107188525 PAPSS1--DKK2 BS_5VQP0E6K ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr4:0.31Mb]],deletion PAPSS1 NA DKK2 NA Kinase NA NA NA NA +X:141730219 X:141648799 SPANXD(31480)/MAGEC3(108097)--SPANXA2-OT1 BS_5VQP0E6K ARRIBA other 2 1 medium [],duplication SPANXD MAGEC3 SPANXA2-OT1 NA NA NA NA NA NA +9:70827847 9:70864511 TRPM3--TRPM3 BS_5VQP0E6K ARRIBA frameshift 41 2 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_5VQP0E6K ARRIBA other 13 1 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_5YJEPPTP ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_5YJEPPTP ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:48809641 2:48799307 AC009975.1--ELOBP3(18412)/AC009975.1(10033) BS_5YJEPPTP ARRIBA other 2 6 medium [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_5YJEPPTP ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_5YJEPPTP ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_5YJEPPTP ARRIBA in-frame 7 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137521866 7:137609609 DGKI--DGKI BS_5YJEPPTP ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +4:65414284 4:65495543 EPHA5--EPHA5 BS_5YJEPPTP ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.35Mb]],duplication/non-canonical_splicing EPHA5 NA EPHA5 NA Kinase, Kinase Kinase, Kinase NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_5YJEPPTP ARRIBA other 21 3 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_5YJEPPTP ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +3:178859489 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_5YJEPPTP ARRIBA other 3 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140781693 KIAA1549--BRAF BS_5YJEPPTP ARRIBA in-frame 8 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_5YJEPPTP ARRIBA frameshift 3 1 high [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +4:16018323 4:16033509 PROM1--PROM1 BS_5YJEPPTP ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing PROM1 NA PROM1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_5YJEPPTP ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_5YJEPPTP ARRIBA other 8 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +4:16323036 4:16256257 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_5YJEPPTP ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_60K3EQ9S ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_60K3EQ9S ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_60K3EQ9S ARRIBA other 2 1 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_60K3EQ9S ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_60K3EQ9S ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_60K3EQ9S ARRIBA other 4 2 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_60K3EQ9S ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +2:195957261 2:195960945 DNAH7--DNAH7 BS_60K3EQ9S ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_60K3EQ9S ARRIBA in-frame 27 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_60K3EQ9S ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_60K3EQ9S ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_60K3EQ9S ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_60K3EQ9S ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +3:178859489 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_60K3EQ9S ARRIBA other 1 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_60K3EQ9S ARRIBA other 3 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_60K3EQ9S ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_60K3EQ9S ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:100846372 3:100926481 ABI3BP--ABI3BP BS_61E80SD6 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.24Mb]],duplication/non-canonical_splicing ABI3BP NA ABI3BP NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_61E80SD6 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_61E80SD6 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_61E80SD6 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_61E80SD6 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +2:201299238 2:201364176 ALS2CR12--ALS2CR12(6778)/TRAK2(13031) BS_61E80SD6 ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA +19:2137011 19:16348213 AP3D1--KLF2(20339)/AC020917.3(4249) BS_61E80SD6 ARRIBA frameshift 23 2 high [],duplication AP3D1 NA KLF2 AC020917.3 NA TranscriptionFactor NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_61E80SD6 ARRIBA other 2 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_61E80SD6 ARRIBA frameshift 18 2 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +14:59456438 14:59565275 GPR135--CCDC175 BS_61E80SD6 ARRIBA other 2 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59543454 GPR135--CCDC175 BS_61E80SD6 ARRIBA other 2 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59540746 GPR135--CCDC175 BS_61E80SD6 ARRIBA other 1 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59551436 GPR135--CCDC175 BS_61E80SD6 ARRIBA other 2 0 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +6:75947314 6:75951094 IMPG1--IMPG1 BS_61E80SD6 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.15Mb]],duplication/non-canonical_splicing IMPG1 NA IMPG1 NA NA NA NA NA NA +2:206017680 2:206095791 INO80D--AC007383.2(9227)/NDUFS1(19026) BS_61E80SD6 ARRIBA frameshift 1 0 low [],duplication INO80D NA AC007383.2 NDUFS1 NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_61E80SD6 ARRIBA frameshift 42 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +19:17986102 19:22320702 KCNN1--ZNF729(3526)/AC011494.1(41887) BS_61E80SD6 ARRIBA frameshift 5 0 medium [],inversion KCNN1 NA ZNF729 AC011494.1 NA TranscriptionFactor NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_61E80SD6 ARRIBA frameshift 35 6 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +15:56429086 15:56466288 MNS1--MNS1(1151)/AC090518.1(76664) BS_61E80SD6 ARRIBA frameshift 4 1 high [],duplication MNS1 NA MNS1 AC090518.1 NA NA NA NA NA +4:118251569 4:118283111 NDST3--PRSS12 BS_61E80SD6 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_INVERSION:+:-:[21390]],duplication/3'-3' NDST3 NA PRSS12 NA NA NA NA NA NA +3:189986788 3:189995442 P3H2--P3H2 BS_61E80SD6 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.17Mb]],duplication/non-canonical_splicing P3H2 NA P3H2 NA NA NA NA NA NA +10:94171496 10:93987721 PLCE1--PIPSL(26181)/PLCE1(43091) BS_61E80SD6 ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_61E80SD6 ARRIBA in-frame 14 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:70745818 12:70764778 PTPRR--PTPRR BS_61E80SD6 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +19:5340664 19:902130 PTPRS--R3HDM4 BS_61E80SD6 ARRIBA other 90 4 high [INTRACHROMOSOMAL[chr19:4.25Mb]],deletion PTPRS NA R3HDM4 NA NA NA NA NA NA +19:5340664 19:902627 PTPRS--R3HDM4 BS_61E80SD6 ARRIBA other 2 5 medium [INTRACHROMOSOMAL[chr19:4.25Mb]],deletion PTPRS NA R3HDM4 NA NA NA NA NA NA +19:5340664 19:902130 PTPRS--R3HDM4 BS_61E80SD6 STARFUSION other 96 5 NA [INTRACHROMOSOMAL[chr19:4.25Mb]] PTPRS NA R3HDM4 NA NA NA NA NA NA +12:120534968 12:120312456 RNF10--SIRT4 BS_61E80SD6 ARRIBA frameshift 5 0 medium [CCLE,INTRACHROMOSOMAL[chr12:0.22Mb]],duplication RNF10 NA SIRT4 NA NA TumorSuppressorGene NA NA NA +12:120534968 12:120312584 RNF10--SIRT4 BS_61E80SD6 ARRIBA in-frame 2 0 low [CCLE,INTRACHROMOSOMAL[chr12:0.22Mb]],duplication RNF10 NA SIRT4 NA NA TumorSuppressorGene NA NA NA +7:128629458 7:128579999 RNU6-177P(2183)/AC018638.4(21727)--AC090114.3 BS_61E80SD6 ARRIBA other 1 0 low [],duplication RNU6-177P AC018638.4 AC090114.3 NA NA NA NA NA NA +7:128629458 7:128579999 RNU6-177P(2183)/AC018638.4(21727)--AC108010.1 BS_61E80SD6 ARRIBA other 1 0 low [],duplication RNU6-177P AC018638.4 AC108010.1 NA NA NA NA NA NA +8:54739029 8:54648985 RP1--RP1 BS_61E80SD6 ARRIBA frameshift 15 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.32Mb]],duplication/non-canonical_splicing RP1 NA RP1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_61E80SD6 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +19:47169923 19:17676041 SAE1--UNC13A BS_61E80SD6 ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr19:29.42Mb]],inversion SAE1 NA UNC13A NA NA NA NA NA NA +19:47169923 19:17696042 SAE1--UNC13A(7677)/MAP1S(23200) BS_61E80SD6 ARRIBA frameshift 4 0 medium [],inversion SAE1 NA UNC13A MAP1S NA NA NA NA NA +1:114947320 1:114923449 SYCP1--SYCP1 BS_61E80SD6 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +5:1296160 10:79683040 TERT(1091)/MIR4457(13150)--AL132656.4 BS_61E80SD6 ARRIBA other 9 4 medium [],translocation TERT MIR4457 AL132656.4 NA CosmicCensus, Oncogene, Oncogene NA NA NA NA +5:136356608 5:136357385 TRPC7--TRPC7 BS_61E80SD6 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.15Mb]],duplication/non-canonical_splicing TRPC7 NA TRPC7 NA NA NA NA NA NA +17:18804266 17:15440285 TVP23B--CDRT4 BS_61E80SD6 ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA +1:216175252 1:216207431 USH2A--USH2A BS_61E80SD6 ARRIBA in-frame 16 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +3:14097650 3:14063379 VN1R21P(7779)/CHCHD4(14427)--TPRXL BS_61E80SD6 ARRIBA other 1 0 low [],duplication VN1R21P CHCHD4 TPRXL NA NA NA NA NA NA +6:52995913 14:20343401 7SK--RPPH1 BS_64HCD9K3 STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RPPH1 NA NA NA NA NA NA +7:77758078 7:77379052 RSBN1L--GSAP BS_64HCD9K3 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr7:0.28Mb]],duplication/5'-5' RSBN1L NA GSAP NA NA NA NA NA NA +8:69501968 8:69306662 SULF1--AC021785.1(128473)/LINC01603(118373) BS_64HCD9K3 ARRIBA other 4 0 medium [],duplication SULF1 NA AC021785.1 LINC01603 NA NA NA NA NA +4:103656194 4:103658403 TACR3--TACR3 BS_64HCD9K3 ARRIBA frameshift 17 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_66ABA973 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_66ABA973 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_66ABA973 ARRIBA in-frame 4 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_66ABA973 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995909 14:20343401 7SK--AL355075.4 BS_66HQ3E4Z STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL355075.4 NA NA NA NA NA NA +6:52995909 14:20343401 7SK--RPPH1 BS_66HQ3E4Z STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_66HQ3E4Z ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_66HQ3E4Z ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_66HQ3E4Z ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_66HQ3E4Z ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_66HQ3E4Z ARRIBA in-frame 14 4 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138861139 7:140787584 KIAA1549--BRAF BS_66HQ3E4Z STARFUSION in-frame 14 4 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +4:53476753 4:53481854 LNX1--LNX1 BS_66HQ3E4Z ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.24Mb]],duplication/non-canonical_splicing LNX1 NA LNX1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_66HQ3E4Z ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_66HQ3E4Z ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +17:18804266 17:15440285 TVP23B--CDRT4 BS_66HQ3E4Z ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA +4:176177654 4:176149807 WDR17--WDR17 BS_66HQ3E4Z ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing WDR17 NA WDR17 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_67Z63A2K ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_67Z63A2K ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:199070153 2:198579708 AC020718.1--AC019330.1 BS_67Z63A2K ARRIBA other 7 1 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +2:199071420 2:198579708 AC020718.1--AC019330.1 BS_67Z63A2K ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_67Z63A2K ARRIBA other 4 0 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +12:85424204 12:85342472 AC131532.1(81292)/AC126471.1(143674)--AC131532.1 BS_67Z63A2K ARRIBA other 2 1 high [],duplication AC131532.1 AC126471.1 AC131532.1 NA NA NA NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_67Z63A2K ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_67Z63A2K ARRIBA frameshift 4 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +3:57301735 3:57357348 DNAH12--DNAH12 BS_67Z63A2K ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_67Z63A2K ARRIBA other 6 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_67Z63A2K ARRIBA frameshift 4 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_67Z63A2K ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_67Z63A2K ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +14:60019260 14:59997656 LRRC9--LRRC9 BS_67Z63A2K ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_67Z63A2K ARRIBA frameshift 31 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_67Z63A2K ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_680K119G ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_680K119G ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_680K119G ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +1:219231374 1:219179147 AL360093.1(5877)/AC096642.1(39400)--LYPLAL1 BS_680K119G ARRIBA other 1 0 low [],duplication AL360093.1 AC096642.1 LYPLAL1 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_680K119G ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_680K119G ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_680K119G ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_680K119G ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_680K119G ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_680K119G ARRIBA other 10 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_680K119G ARRIBA other 6 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_680K119G ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_680K119G ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_680K119G ARRIBA in-frame 23 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_680K119G ARRIBA frameshift 2 1 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_680K119G ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_680K119G ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_680K119G ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_680K119G ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_680K119G ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211082898 KCNH1--AL590132.1 BS_680K119G ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_680K119G ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_680K119G ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_680K119G ARRIBA other 3 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_680K119G ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_680K119G ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_680K119G ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_68BW2163 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_68BW2163 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_68BW2163 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_68BW2163 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_68BW2163 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_68BW2163 ARRIBA other 12 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +15:90390873 15:90354642 IQGAP1--ZNF774 BS_68BW2163 ARRIBA frameshift 3 0 high [CCLE,ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[19072]],duplication IQGAP1 NA ZNF774 NA NA TranscriptionFactor NA NA TCGAFusion +1:51236879 1:51112464 RNF11--C1orf185 BS_68BW2163 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.09Mb],LOCAL_REARRANGEMENT:+:[88185]],duplication RNF11 NA C1orf185 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_68BW2163 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_68BW2163 ARRIBA other 3 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_699TN5RN ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_699TN5RN ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_699TN5RN ARRIBA in-frame 13 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_699TN5RN ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:92492286 7:92457552 PEX1--GATAD1 BS_69V8P8A0 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr7:0.03Mb],LOCAL_INVERSION:-:+:[28184]],duplication/3'-3' PEX1 NA GATAD1 NA NA NA NA NA NA +9:35657753 6:52995631 RMRP--7SK BS_69V8P8A0 STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr9--chr1]] RMRP NA 7SK NA Oncogene NA NA NA NA +14:49862560 14:20343402 RN7SL2--AL355075.4 BS_69V8P8A0 STARFUSION other 5 14 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862570 14:20343378 RN7SL2--AL355075.4 BS_69V8P8A0 STARFUSION other 4 14 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862560 14:20343402 RN7SL2--RPPH1 BS_69V8P8A0 STARFUSION other 5 14 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862572 14:20343379 RN7SL2--RPPH1 BS_69V8P8A0 STARFUSION other 4 14 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +9:70681506 9:70784279 TRPM3--TRPM3 BS_69V8P8A0 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA +14:52439204 14:52457174 TXNDC16--TXNDC16 BS_69V8P8A0 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing TXNDC16 NA TXNDC16 NA NA NA NA NA NA +7:119052433 7:117784454 AC092098.1(101174)/AC079791.1(125744)--CTTNBP2 BS_6DCSD5Y6 ARRIBA other 9 0 high [],deletion AC092098.1 AC079791.1 CTTNBP2 NA NA NA NA NA NA +16:56729506 16:83344862 AC106779.1--CDH13 BS_6DCSD5Y6 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr16:25.90Mb]],inversion AC106779.1 NA CDH13 NA NA TumorSuppressorGene, Oncogene NA NA NA +20:51768302 20:57659697 ATP9A--PMEPA1 BS_6DCSD5Y6 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr20:5.88Mb]],duplication ATP9A NA PMEPA1 NA NA Oncogene NA NA NA +7:121138319 7:117784454 CPED1--CTTNBP2 BS_6DCSD5Y6 ARRIBA other 66 5 high [INTRACHROMOSOMAL[chr7:3.11Mb]],deletion/3'-3' CPED1 NA CTTNBP2 NA NA NA NA NA NA +7:117734913 7:118867436 CTTNBP2--ANKRD7(371265)/GTF3AP6(12667) BS_6DCSD5Y6 ARRIBA frameshift 8 0 medium [],duplication CTTNBP2 NA ANKRD7 GTF3AP6 NA NA NA NA NA +7:117734913 7:118890645 CTTNBP2--GTF3AP6(9357)/AC092098.1(59741) BS_6DCSD5Y6 ARRIBA frameshift 17 0 high [],duplication CTTNBP2 NA GTF3AP6 AC092098.1 NA NA NA NA NA +20:50955186 20:44217234 DPM1--OSER1-AS1 BS_6DCSD5Y6 ARRIBA frameshift 8 1 high [INTRACHROMOSOMAL[chr20:6.71Mb]],deletion/5'-5' DPM1 NA OSER1-AS1 NA NA NA NA NA NA +20:58910401 20:51060877 GNAS--KCNG1(37748)/AL121785.1(37261) BS_6DCSD5Y6 ARRIBA frameshift 11 1 medium [],inversion GNAS NA KCNG1 AL121785.1 CosmicCensus, Oncogene NA NA NA NA +20:58910425 20:57671893 GNAS--PMEPA1 BS_6DCSD5Y6 ARRIBA frameshift 48 3 medium [INTRACHROMOSOMAL[chr20:1.13Mb]],inversion GNAS NA PMEPA1 NA CosmicCensus, Oncogene Oncogene NA NA NA +20:58910401 20:43981008 GNAS--TOX2 BS_6DCSD5Y6 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr20:14.77Mb]],inversion/3'-3' GNAS NA TOX2 NA CosmicCensus, Oncogene NA NA NA NA +7:114923127 7:117784454 MDFIC--CTTNBP2 BS_6DCSD5Y6 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr7:2.69Mb]],inversion MDFIC NA CTTNBP2 NA NA NA NA NA NA +7:114923127 7:117861316 MDFIC--CTTNBP2 BS_6DCSD5Y6 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:2.69Mb]],inversion MDFIC NA CTTNBP2 NA NA NA NA NA NA +7:114923127 7:120109739 MDFIC--RNU1-29P(103638)/AC004872.1(31277) BS_6DCSD5Y6 ARRIBA frameshift 78 0 medium [],inversion MDFIC NA RNU1-29P AC004872.1 NA NA NA NA NA +7:114923127 7:117212383 MDFIC--ST7 BS_6DCSD5Y6 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr7:1.93Mb]],inversion/3'-3' MDFIC NA ST7 NA NA TumorSuppressorGene NA NA NA +7:116809218 7:116739950 MET(10832)/CAPZA2(1852)--MET BS_6DCSD5Y6 ARRIBA other 48 0 high [],duplication MET CAPZA2 MET NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +15:73633125 7:92142829 NPTN--LRRD1 BS_6DCSD5Y6 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr15--chr7]],translocation NPTN NA LRRD1 NA NA NA NA NA NA +15:73633125 7:92131872 NPTN--LRRD1 BS_6DCSD5Y6 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr15--chr7]],translocation NPTN NA LRRD1 NA NA NA NA NA NA +7:135607371 3:122708190 NUP205--PARP14 BS_6DCSD5Y6 ARRIBA in-frame 3 0 high [INTERCHROMOSOMAL[chr7--chr3]],translocation NUP205 NA PARP14 NA NA NA NA NA NA +7:135607371 3:122713424 NUP205--PARP14 BS_6DCSD5Y6 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr7--chr3]],translocation NUP205 NA PARP14 NA NA NA NA NA NA +7:117020629 7:121226427 ST7--CPED1 BS_6DCSD5Y6 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:3.76Mb]],inversion/3'-3' ST7 NA CPED1 NA TumorSuppressorGene NA NA NA NA +7:117020629 7:117784454 ST7--CTTNBP2 BS_6DCSD5Y6 ARRIBA in-frame 7 0 high [CCLE,INTRACHROMOSOMAL[chr7:0.48Mb]],inversion ST7 NA CTTNBP2 NA TumorSuppressorGene NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_6DCSD5Y6 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +7:120856698 7:116739950 TSPAN12--MET BS_6DCSD5Y6 ARRIBA in-frame 536 31 high [INTRACHROMOSOMAL[chr7:3.99Mb]],inversion TSPAN12 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:120856698 7:116739950 TSPAN12--MET BS_6DCSD5Y6 STARFUSION in-frame 601 44 NA [INTRACHROMOSOMAL[chr7:3.99Mb]] TSPAN12 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:120856698 7:116809080 TSPAN12--MET(10694)/CAPZA2(1990) BS_6DCSD5Y6 ARRIBA frameshift 52 0 high [],inversion TSPAN12 NA MET CAPZA2 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_6G6C7VPX ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_6G6C7VPX ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:95423469 5:95017484 FAM81B--MCTP1 BS_6G6C7VPX ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr5:0.11Mb]],deletion/3'-3' FAM81B NA MCTP1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_6G6C7VPX ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_6H1C1ME9 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_6H1C1ME9 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_6H1C1ME9 ARRIBA other 2 2 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_6H1C1ME9 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_6H1C1ME9 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +12:123820758 12:123818950 DNAH10--DNAH10 BS_6H1C1ME9 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA +3:57301735 3:57357348 DNAH12--DNAH12 BS_6H1C1ME9 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +6:138889031 6:138842979 ECT2L--ECT2L BS_6H1C1ME9 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA +4:161455004 4:161500134 FSTL5--FSTL5 BS_6H1C1ME9 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_6H1C1ME9 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:43397971 2:43527988 THADA--THADA BS_6H1C1ME9 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.37Mb]],duplication/non-canonical_splicing THADA NA THADA NA Oncogene Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_6HTK4YJP ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_6HTK4YJP ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:5745341 4:5498945 EVC--STK32B BS_6HTK4YJP ARRIBA frameshift 9 1 high [CCLE,INTRACHROMOSOMAL[chr4:0.21Mb]],duplication EVC NA STK32B NA NA Kinase NA NA NA +12:69470530 12:69459517 FRS2--LINC02373 BS_6HTK4YJP ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_REARRANGEMENT:+:[9625]],duplication FRS2 NA LINC02373 NA NA NA NA NA NA +15:71959901 5:143056028 MYO9A--ARHGAP26 BS_6HTK4YJP ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr15--chr5]],translocation MYO9A NA ARHGAP26 NA NA CosmicCensus, Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_6HTK4YJP ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:1073633 11:114242167 SLC12A7--ZBTB16 BS_6HTK4YJP ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr5--chr11]],translocation SLC12A7 NA ZBTB16 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +5:1074567 11:114242167 SLC12A7--ZBTB16 BS_6HTK4YJP ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr5--chr11]],translocation SLC12A7 NA ZBTB16 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +7:122126375 5:24774271 AASS--AC091893.1(24499)/BTG4P1(12571) BS_6JHXXVR7 ARRIBA frameshift 134 17 high [],translocation AASS NA AC091893.1 BTG4P1 NA NA NA NA NA +7:122126375 5:24786870 AASS--BTG4P1 BS_6JHXXVR7 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation AASS NA BTG4P1 NA NA NA NA NA NA +7:122126375 5:24803178 AASS--BTG4P1(16154)/SNORD29(8303) BS_6JHXXVR7 ARRIBA frameshift 12 4 high [],translocation AASS NA BTG4P1 SNORD29 NA NA NA NA NA +7:122126375 5:113920076 AASS--YTHDC2(324791)/AC106789.1(135930) BS_6JHXXVR7 ARRIBA frameshift 8 0 high [],translocation AASS NA YTHDC2 AC106789.1 NA NA NA NA NA +17:68993016 17:69062136 ABCA9--ABCA9(1072)/ABCA6(16566) BS_6JHXXVR7 ARRIBA frameshift 1 0 low [],duplication ABCA9 NA ABCA9 ABCA6 NA NA NA NA NA +17:1083520 17:31305630 ABR--AC134669.2 BS_6JHXXVR7 ARRIBA frameshift 14 4 high [INTRACHROMOSOMAL[chr17:30.08Mb]],duplication ABR NA AC134669.2 NA Oncogene NA NA NA NA +17:1083520 17:31307959 ABR--AC134669.2 BS_6JHXXVR7 ARRIBA frameshift 1 4 high [INTRACHROMOSOMAL[chr17:30.08Mb]],duplication ABR NA AC134669.2 NA Oncogene NA NA NA NA +17:1091665 17:31305630 ABR--AC134669.2 BS_6JHXXVR7 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr17:30.08Mb]],duplication ABR NA AC134669.2 NA Oncogene NA NA NA NA +17:1083520 17:31305630 ABR--AC134669.2 BS_6JHXXVR7 STARFUSION frameshift 15 5 NA [INTRACHROMOSOMAL[chr17:30.08Mb]] ABR NA AC134669.2 NA Oncogene NA NA NA NA +17:1083520 17:31305630 ABR--EVI2B BS_6JHXXVR7 ARRIBA frameshift 14 4 high [INTRACHROMOSOMAL[chr17:30.07Mb]],duplication ABR NA EVI2B NA Oncogene NA NA NA NA +17:1083520 17:31307959 ABR--EVI2B BS_6JHXXVR7 ARRIBA frameshift 1 4 high [INTRACHROMOSOMAL[chr17:30.07Mb]],duplication ABR NA EVI2B NA Oncogene NA NA NA NA +17:1091665 17:31305630 ABR--EVI2B BS_6JHXXVR7 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr17:30.07Mb]],duplication ABR NA EVI2B NA Oncogene NA NA NA NA +17:1083520 17:31305630 ABR--EVI2B BS_6JHXXVR7 STARFUSION other 15 5 NA [INTRACHROMOSOMAL[chr17:30.07Mb]] ABR NA EVI2B NA Oncogene NA NA NA NA +14:74474304 14:74486436 AC005479.2--NPC2 BS_6JHXXVR7 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr14:0.00Mb],LOCAL_REARRANGEMENT:-:[1328]],duplication AC005479.2 NA NPC2 NA NA NA NA NA NA +3:113162019 3:115027574 AC078785.1--ZBTB20 BS_6JHXXVR7 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr3:1.13Mb]],inversion AC078785.1 NA ZBTB20 NA NA TranscriptionFactor NA NA NA +5:24780337 7:122133741 AC091893.1(30565)/BTG4P1(6505)--AASS BS_6JHXXVR7 ARRIBA other 2 0 low [],translocation AC091893.1 BTG4P1 AASS NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_6JHXXVR7 STARFUSION other 22 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +7:102639123 7:112004131 AC105052.1--DOCK4 BS_6JHXXVR7 ARRIBA in-frame 6 0 medium [INTRACHROMOSOMAL[chr7:9.08Mb]],duplication AC105052.1 NA DOCK4 NA NA NA NA NA NA +16:4113750 16:2519218 ADCY9--AC093525.2 BS_6JHXXVR7 ARRIBA frameshift 32 2 high [INTRACHROMOSOMAL[chr16:1.43Mb]],inversion ADCY9 NA AC093525.2 NA NA NA NA NA NA +16:4113750 16:2519541 ADCY9--AC093525.2 BS_6JHXXVR7 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr16:1.43Mb]],inversion ADCY9 NA AC093525.2 NA NA NA NA NA NA +16:4113750 16:2519218 ADCY9--AC093525.2 BS_6JHXXVR7 STARFUSION frameshift 32 2 NA [INTRACHROMOSOMAL[chr16:1.43Mb]] ADCY9 NA AC093525.2 NA NA NA NA NA NA +16:4113750 16:2519218 ADCY9--ATP6V0C BS_6JHXXVR7 ARRIBA in-frame 32 2 high [INTRACHROMOSOMAL[chr16:1.43Mb]],inversion ADCY9 NA ATP6V0C NA NA NA NA NA NA +16:4113750 16:2519541 ADCY9--ATP6V0C BS_6JHXXVR7 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr16:1.43Mb]],inversion ADCY9 NA ATP6V0C NA NA NA NA NA NA +16:4113750 16:2519218 ADCY9--ATP6V0C BS_6JHXXVR7 STARFUSION in-frame 32 2 NA [INTRACHROMOSOMAL[chr16:1.43Mb]] ADCY9 NA ATP6V0C NA NA NA NA NA NA +6:37818578 6:46906786 AL121574.1--ADGRF5 BS_6JHXXVR7 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr6:9.03Mb]],duplication AL121574.1 NA ADGRF5 NA NA NA NA NA NA +11:46493608 14:32535554 AMBRA1--AKAP6 BS_6JHXXVR7 ARRIBA frameshift 11 1 high [INTERCHROMOSOMAL[chr11--chr14]],translocation AMBRA1 NA AKAP6 NA NA NA NA NA NA +11:46493608 14:32487812 AMBRA1--AKAP6 BS_6JHXXVR7 ARRIBA frameshift 10 2 high [INTERCHROMOSOMAL[chr11--chr14]],translocation AMBRA1 NA AKAP6 NA NA NA NA NA NA +11:46493608 14:32535554 AMBRA1--AKAP6 BS_6JHXXVR7 STARFUSION frameshift 11 2 NA [INTERCHROMOSOMAL[chr11--chr14]] AMBRA1 NA AKAP6 NA NA NA NA NA NA +11:10478730 11:3166289 AMPD3--OSBPL5 BS_6JHXXVR7 ARRIBA frameshift 34 0 high [INTRACHROMOSOMAL[chr11:7.14Mb]],duplication/5'-5' AMPD3 NA OSBPL5 NA NA NA NA NA NA +11:43312196 16:3588587 API5--SLX4 BS_6JHXXVR7 ARRIBA frameshift 17 4 high [INTERCHROMOSOMAL[chr11--chr16]],translocation/5'-5' API5 NA SLX4 NA NA TumorSuppressorGene NA NA NA +16:67480957 14:100361921 ATP6V0D1--WARS BS_6JHXXVR7 ARRIBA frameshift 24 5 high [INTERCHROMOSOMAL[chr16--chr14]],translocation ATP6V0D1 NA WARS NA NA NA NA NA NA +16:67480957 14:100361921 ATP6V0D1--WARS BS_6JHXXVR7 STARFUSION frameshift 21 5 NA [INTERCHROMOSOMAL[chr16--chr14]] ATP6V0D1 NA WARS NA NA NA NA NA NA +21:10473729 21:10454134 BAGE2--BAGE2 BS_6JHXXVR7 ARRIBA other 13 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.10Mb]],duplication/non-canonical_splicing BAGE2 NA BAGE2 NA NA NA NA NA NA +7:112895569 7:112169166 BMT2--DOCK4 BS_6JHXXVR7 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr7:0.61Mb]],inversion/5'-5' BMT2 NA DOCK4 NA NA NA NA NA NA +6:36207444 11:38013629 BRPF3--AC103798.2 BS_6JHXXVR7 ARRIBA frameshift 11 0 high [INTERCHROMOSOMAL[chr6--chr11]],translocation/5'-5' BRPF3 NA AC103798.2 NA NA NA NA NA NA +6:36207444 11:38055763 BRPF3--AC103798.2(41622)/LRRC6P1(155626) BS_6JHXXVR7 ARRIBA frameshift 7 0 high [],translocation BRPF3 NA AC103798.2 LRRC6P1 NA NA NA NA NA +19:55289620 5:19402218 BRSK1--HSPD1P15(167731)/CDH18(70733) BS_6JHXXVR7 ARRIBA frameshift 85 15 high [],translocation BRSK1 NA HSPD1P15 CDH18 Kinase, TumorSuppressorGene, Kinase NA NA NA NA +6:36927603 7:21204004 C6orf89--LINC01162(180856)/RN7SL542P(11533) BS_6JHXXVR7 ARRIBA other 5 0 medium [],translocation C6orf89 NA LINC01162 RN7SL542P NA NA NA NA NA +3:49244733 5:78564871 CCDC36--LHFPL2 BS_6JHXXVR7 ARRIBA frameshift 74 7 high [INTERCHROMOSOMAL[chr3--chr5]],translocation CCDC36 NA LHFPL2 NA NA NA NA NA NA +3:49241389 5:78564871 CCDC36--LHFPL2 BS_6JHXXVR7 ARRIBA frameshift 1 2 high [INTERCHROMOSOMAL[chr3--chr5]],translocation CCDC36 NA LHFPL2 NA NA NA NA NA NA +3:49244733 5:78564871 CCDC36--LHFPL2 BS_6JHXXVR7 STARFUSION other 97 15 NA [INTERCHROMOSOMAL[chr3--chr5]] CCDC36 NA LHFPL2 NA NA NA NA NA NA +6:42048501 11:10461515 CCND3--AMPD3 BS_6JHXXVR7 ARRIBA other 44 11 high [INTERCHROMOSOMAL[chr6--chr11]],translocation CCND3 NA AMPD3 NA CosmicCensus, Oncogene NA NA NA NA +6:42048501 11:10461515 CCND3--AMPD3 BS_6JHXXVR7 STARFUSION other 44 11 NA [INTERCHROMOSOMAL[chr6--chr11]] CCND3 NA AMPD3 NA CosmicCensus, Oncogene NA NA NA NA +6:42048501 6:42923027 CCND3--PTCRA BS_6JHXXVR7 ARRIBA other 6 2 high [INTRACHROMOSOMAL[chr6:0.87Mb]],inversion CCND3 NA PTCRA NA CosmicCensus, Oncogene Oncogene NA NA NA +6:42048501 6:42924229 CCND3--PTCRA BS_6JHXXVR7 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr6:0.87Mb]],inversion CCND3 NA PTCRA NA CosmicCensus, Oncogene Oncogene NA NA NA +6:42048501 6:42922218 CCND3--PTCRA BS_6JHXXVR7 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr6:0.87Mb]],inversion CCND3 NA PTCRA NA CosmicCensus, Oncogene Oncogene NA NA NA +1:227160543 5:88410073 CDC42BPA--TMEM161B-AS1 BS_6JHXXVR7 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr1--chr5]],translocation CDC42BPA NA TMEM161B-AS1 NA Kinase NA NA NA NA +6:44424583 6:50587685 CDC5L--AL135908.1 BS_6JHXXVR7 ARRIBA frameshift 33 0 high [INTRACHROMOSOMAL[chr6:6.14Mb]],inversion CDC5L NA AL135908.1 NA TranscriptionFactor NA NA NA NA +6:44424583 6:50587685 CDC5L--AL135908.1 BS_6JHXXVR7 STARFUSION other 59 7 NA [INTRACHROMOSOMAL[chr6:6.14Mb]] CDC5L NA AL135908.1 NA TranscriptionFactor NA NA NA NA +6:44424583 6:36740803 CDC5L--CPNE5 BS_6JHXXVR7 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr6:7.55Mb]],duplication/5'-5' CDC5L NA CPNE5 NA TranscriptionFactor NA NA NA NA +16:31711012 7:27159095 CLUHP3--AC004080.4(119)/HOXA9(3340) BS_6JHXXVR7 ARRIBA other 4 2 medium [],translocation CLUHP3 NA AC004080.4 HOXA9 NA NA NA CosmicCensus, Oncogene, TranscriptionFactor NA +7:135509889 7:28137679 CNOT4--JAZF1 BS_6JHXXVR7 ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr7:107.18Mb]],inversion/5'-5' CNOT4 NA JAZF1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +11:14474495 11:19703483 COPB1--NAV2 BS_6JHXXVR7 ARRIBA frameshift 14 6 high [INTRACHROMOSOMAL[chr11:4.85Mb]],duplication/5'-5' COPB1 NA NAV2 NA NA NA NA NA NA +11:14474495 11:36563385 COPB1--RAG1 BS_6JHXXVR7 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr11:22.01Mb]],inversion COPB1 NA RAG1 NA NA TranscriptionFactor NA NA NA +11:14474495 11:36573291 COPB1--RAG1 BS_6JHXXVR7 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:22.01Mb]],inversion COPB1 NA RAG1 NA NA TranscriptionFactor NA NA NA +7:130610953 7:131875301 COPG2--NDUFB9P2(121049)/AC009518.2(17315) BS_6JHXXVR7 ARRIBA frameshift 3 0 high [],inversion COPG2 NA NDUFB9P2 AC009518.2 NA NA NA NA NA +16:3879832 21:25911962 CREBBP--APP BS_6JHXXVR7 ARRIBA in-frame 3 0 low [INTERCHROMOSOMAL[chr16--chr21]],translocation CREBBP NA APP NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +14:39279537 11:36723532 CTAGE5--AC104042.1(25665)/SNORA31(978593) BS_6JHXXVR7 ARRIBA frameshift 16 0 high [],translocation CTAGE5 NA AC104042.1 SNORA31 NA NA NA NA NA +22:11068154 22:10752913 CU104787.1--U2(16630)/CU459211.1(186475) BS_6JHXXVR7 ARRIBA other 4 0 medium [],inversion CU104787.1 NA U2 CU459211.1 NA NA NA NA NA +7:101816093 7:102275663 CUX1--CUX1 BS_6JHXXVR7 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.47Mb]],inversion/3'-3' CUX1 NA CUX1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +7:101816093 7:123949872 CUX1--SPAM1 BS_6JHXXVR7 ARRIBA frameshift 12 0 medium [INTRACHROMOSOMAL[chr7:21.64Mb]],deletion CUX1 NA SPAM1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor Oncogene NA NA NA +4:168453124 9:40140377 DDX60L--AL773545.1 BS_6JHXXVR7 ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr4--chr9]],translocation/5'-5' DDX60L NA AL773545.1 NA NA NA NA NA NA +4:168453124 4:165430821 DDX60L--CPE BS_6JHXXVR7 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr4:2.86Mb]],inversion DDX60L NA CPE NA NA NA NA NA TCGAFusion +3:52392894 3:49092456 DNAH1--QRICH1 BS_6JHXXVR7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:3.22Mb]],deletion/3'-3' DNAH1 NA QRICH1 NA NA NA NA NA NA +7:112206102 7:109205364 DOCK4--BUB3P1(210335)/AC002386.1(116956) BS_6JHXXVR7 ARRIBA frameshift 132 16 high [],deletion DOCK4 NA BUB3P1 AC002386.1 NA NA NA NA NA +7:112206102 7:112954717 DOCK4--HRAT17 BS_6JHXXVR7 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr7:0.75Mb]],inversion/5'-5' DOCK4 NA HRAT17 NA NA NA NA NA NA +1:121538420 7:18793345 EMBP1--HDAC9 BS_6JHXXVR7 ARRIBA other 6 1 high [INTERCHROMOSOMAL[chr1--chr7]],translocation EMBP1 NA HDAC9 NA NA NA NA NA NA +1:121519459 7:18793345 EMBP1--HDAC9 BS_6JHXXVR7 ARRIBA other 2 0 high [INTERCHROMOSOMAL[chr1--chr7]],translocation EMBP1 NA HDAC9 NA NA NA NA NA NA +1:121519459 7:18829161 EMBP1--HDAC9 BS_6JHXXVR7 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr1--chr7]],translocation EMBP1 NA HDAC9 NA NA NA NA NA NA +3:10078197 3:51279825 FANCD2--DOCK3 BS_6JHXXVR7 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr3:40.57Mb]],inversion/3'-3' FANCD2 NA DOCK3 NA CosmicCensus, Oncogene NA NA NA NA +2:215404389 2:206766644 FN1--FASTKD2 BS_6JHXXVR7 ARRIBA in-frame 20 7 medium [INTRACHROMOSOMAL[chr2:8.57Mb]],inversion FN1 NA FASTKD2 NA Oncogene NA NA NA NA +2:215404389 2:206766644 FN1--FASTKD2 BS_6JHXXVR7 STARFUSION other 25 9 NA [INTRACHROMOSOMAL[chr2:8.57Mb]] FN1 NA FASTKD2 NA Oncogene NA NA NA NA +2:215404389 2:206744181 FN1--MDH1B BS_6JHXXVR7 ARRIBA frameshift 16 4 medium [INTRACHROMOSOMAL[chr2:8.59Mb]],inversion/5'-5' FN1 NA MDH1B NA Oncogene NA NA NA NA +16:15884008 16:15904661 FOPNL--FOPNL(16036)/AC130651.1(27036) BS_6JHXXVR7 ARRIBA frameshift 7 1 high [],duplication FOPNL NA FOPNL AC130651.1 NA NA NA NA NA +7:114534846 7:130881014 FOXP2--AC016831.1 BS_6JHXXVR7 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr7:16.18Mb]],deletion/5'-5' FOXP2 NA AC016831.1 NA TranscriptionFactor NA NA NA NA +7:114534706 7:107474626 FOXP2--GPR22 BS_6JHXXVR7 ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr7:6.61Mb]],inversion/3'-3' FOXP2 NA GPR22 NA TranscriptionFactor NA NA NA NA +7:127581733 7:106718767 GCC1--AC004917.1 BS_6JHXXVR7 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:20.81Mb]],inversion/5'-5' GCC1 NA AC004917.1 NA NA NA NA NA NA +7:127583497 5:24596072 GCC1--AC091885.2 BS_6JHXXVR7 ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation/3'-3' GCC1 NA AC091885.2 NA NA NA NA NA NA +7:127583497 5:24596072 GCC1--CDH10 BS_6JHXXVR7 ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation GCC1 NA CDH10 NA NA CosmicCensus, Oncogene NA NA NA +14:31156840 11:36888912 HECTD1--AC104042.1(191045)/SNORA31(813213) BS_6JHXXVR7 ARRIBA frameshift 22 4 high [],translocation HECTD1 NA AC104042.1 SNORA31 NA NA NA NA NA +14:31156840 1:217630846 HECTD1--GPATCH2 BS_6JHXXVR7 ARRIBA frameshift 7 0 high [INTERCHROMOSOMAL[chr14--chr1]],translocation/5'-5' HECTD1 NA GPATCH2 NA NA NA NA NA NA +14:31205797 2:209179425 HECTD1--PKP4P1 BS_6JHXXVR7 ARRIBA frameshift 15 0 high [INTERCHROMOSOMAL[chr14--chr2]],translocation/5'-5' HECTD1 NA PKP4P1 NA NA NA NA NA NA +9:31973112 9:32405485 HMGB3P23(327952)/RNA5SP281(320446)--ACO1 BS_6JHXXVR7 ARRIBA other 2 0 medium [],deletion HMGB3P23 RNA5SP281 ACO1 NA NA NA NA NA NA +7:27113993 7:23642931 HOXA-AS2--CCDC126 BS_6JHXXVR7 ARRIBA other 15 0 high [INTRACHROMOSOMAL[chr7:3.46Mb]],duplication HOXA-AS2 NA CCDC126 NA NA NA NA NA NA +7:27116343 7:23642931 HOXA-AS2--CCDC126 BS_6JHXXVR7 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr7:3.46Mb]],duplication HOXA-AS2 NA CCDC126 NA NA NA NA NA NA +7:27113993 7:23642931 HOXA-AS2--CCDC126 BS_6JHXXVR7 STARFUSION other 15 1 NA [INTRACHROMOSOMAL[chr7:3.46Mb]] HOXA-AS2 NA CCDC126 NA NA NA NA NA NA +11:18298792 3:101818528 HPS5--NXPE3 BS_6JHXXVR7 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr11--chr3]],translocation/5'-5' HPS5 NA NXPE3 NA NA NA NA NA NA +7:113059014 7:114689783 HRAT17(63380)/AC073346.2(16110)--FOXP2 BS_6JHXXVR7 ARRIBA other 5 3 high [],deletion HRAT17 AC073346.2 FOXP2 NA NA TranscriptionFactor NA NA NA +16:1523283 5:12375625 IFT140--RNU6-679P(78121)/AC106771.1(178265) BS_6JHXXVR7 ARRIBA frameshift 13 1 medium [],translocation IFT140 NA RNU6-679P AC106771.1 NA NA NA NA NA +3:9917734 5:101121002 IL17RC--ST8SIA4(217736)/RN7SL802P(460828) BS_6JHXXVR7 ARRIBA frameshift 22 2 high [],translocation IL17RC NA ST8SIA4 RN7SL802P NA NA NA NA NA +3:9918050 5:101158161 IL17RC--ST8SIA4(254895)/RN7SL802P(423669) BS_6JHXXVR7 ARRIBA frameshift 2 1 medium [],translocation IL17RC NA ST8SIA4 RN7SL802P NA NA NA NA NA +7:111487238 7:135398226 IMMP2L--CNOT4 BS_6JHXXVR7 ARRIBA in-frame 20 1 high [INTRACHROMOSOMAL[chr7:23.80Mb]],duplication IMMP2L NA CNOT4 NA NA NA NA NA NA +7:111392802 7:135398226 IMMP2L--CNOT4 BS_6JHXXVR7 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr7:23.80Mb]],duplication IMMP2L NA CNOT4 NA NA NA NA NA NA +7:111487238 7:135398226 IMMP2L--CNOT4 BS_6JHXXVR7 STARFUSION in-frame 15 2 NA [INTRACHROMOSOMAL[chr7:23.80Mb]] IMMP2L NA CNOT4 NA NA NA NA NA NA +7:110886593 5:113739723 IMMP2L--YTHDC2(144438)/AC106789.1(316283) BS_6JHXXVR7 ARRIBA frameshift 9 1 high [],translocation IMMP2L NA YTHDC2 AC106789.1 NA NA NA NA NA +6:36443111 11:33236999 KCTD20--AL136126.1 BS_6JHXXVR7 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr6--chr11]],translocation KCTD20 NA AL136126.1 NA NA NA NA NA NA +6:36443111 11:33286413 KCTD20--HIPK3 BS_6JHXXVR7 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr6--chr11]],translocation KCTD20 NA HIPK3 NA NA Kinase, Kinase NA NA NA +6:17987054 3:83273102 KIF13A--CYP51A1P1(465081)/SRRM1P2(663943) BS_6JHXXVR7 ARRIBA frameshift 14 1 high [],translocation KIF13A NA CYP51A1P1 SRRM1P2 NA NA NA NA NA +6:33782564 6:39792493 LEMD2--DAAM2 BS_6JHXXVR7 ARRIBA other 9 1 medium [INTRACHROMOSOMAL[chr6:6.00Mb]],duplication/5'-5' LEMD2 NA DAAM2 NA NA NA NA NA NA +5:78564813 5:1282624 LHFPL2--TERT BS_6JHXXVR7 ARRIBA other 20 6 high [INTRACHROMOSOMAL[chr5:77.19Mb]],deletion LHFPL2 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA +5:78564813 5:1268633 LHFPL2--TERT BS_6JHXXVR7 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:77.19Mb]],deletion LHFPL2 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA +5:78564813 5:1266535 LHFPL2--TERT BS_6JHXXVR7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:77.19Mb]],deletion LHFPL2 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA +5:78564813 5:1272280 LHFPL2--TERT BS_6JHXXVR7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:77.19Mb]],deletion LHFPL2 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA +5:78564813 5:1282624 LHFPL2--TERT BS_6JHXXVR7 STARFUSION other 20 3 NA [INTRACHROMOSOMAL[chr5:77.19Mb]] LHFPL2 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA +7:130945720 7:110531164 LINC-PINT--AC092167.1 BS_6JHXXVR7 ARRIBA other 11 1 high [INTRACHROMOSOMAL[chr7:20.41Mb]],inversion/5'-5' LINC-PINT NA AC092167.1 NA TumorSuppressorGene NA NA NA NA +7:130945720 7:110554089 LINC-PINT--AC092167.1(19335)/IMMP2L(108962) BS_6JHXXVR7 ARRIBA other 2 1 high [],inversion LINC-PINT NA AC092167.1 IMMP2L TumorSuppressorGene NA NA NA NA +5:97670684 5:97881430 LINC01340--LINC02234 BS_6JHXXVR7 STARFUSION other 12 1 NA [INTRACHROMOSOMAL[chr5:0.21Mb]] LINC01340 NA LINC02234 NA NA NA NA NA NA +3:81986381 5:32143880 LINC02008--GOLPH3 BS_6JHXXVR7 ARRIBA other 4 1 medium [INTERCHROMOSOMAL[chr3--chr5]],translocation LINC02008 NA GOLPH3 NA NA NA NA NA NA +3:81986381 5:32135686 LINC02008--GOLPH3 BS_6JHXXVR7 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr3--chr5]],translocation LINC02008 NA GOLPH3 NA NA NA NA NA NA +3:81986381 5:29600702 LINC02008--UBL5P1 BS_6JHXXVR7 ARRIBA other 5 0 high [INTERCHROMOSOMAL[chr3--chr5]],translocation/5'-5' LINC02008 NA UBL5P1 NA NA NA NA NA NA +11:33954559 7:34569861 LMO2(62270)/CAPRIN1(97124)--NPSR1-AS1 BS_6JHXXVR7 ARRIBA other 13 3 high [],translocation LMO2 CAPRIN1 NPSR1-AS1 NA CosmicCensus, Oncogene NA NA NA NA +16:20920214 16:6323458 LYRM1--RBFOX1 BS_6JHXXVR7 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr16:13.19Mb]],inversion/3'-3' LYRM1 NA RBFOX1 NA NA NA NA NA NA +16:8625798 11:33954793 METTL22--LMO2(62504)/CAPRIN1(96890) BS_6JHXXVR7 ARRIBA frameshift 30 4 high [],translocation METTL22 NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA +3:158809287 3:162120978 MFSD1--AC131211.1(299070)/TOMM22P6(365563) BS_6JHXXVR7 ARRIBA frameshift 2 0 low [],deletion MFSD1 NA AC131211.1 TOMM22P6 NA NA NA NA NA +3:158809287 3:162204737 MFSD1--AC131211.1(382829)/TOMM22P6(281804) BS_6JHXXVR7 ARRIBA frameshift 5 1 high [],deletion MFSD1 NA AC131211.1 TOMM22P6 NA NA NA NA NA +7:135950599 7:25926884 MTPN--AC005165.1(175890)/AC010719.1(21773) BS_6JHXXVR7 ARRIBA frameshift 33 2 high [],inversion MTPN NA AC005165.1 AC010719.1 NA NA NA NA NA +7:123550470 5:24726275 NDUFA5--CDH10(81297)/AC091893.1(23099) BS_6JHXXVR7 ARRIBA frameshift 5 0 medium [],translocation NDUFA5 NA CDH10 AC091893.1 NA CosmicCensus, Oncogene NA NA NA +17:31265339 17:1088610 NF1--ABR BS_6JHXXVR7 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr17:29.87Mb]],duplication/5'-5' NF1 NA ABR NA TumorSuppressorGene, CosmicCensus, Oncogene Oncogene NA NA NA +6:44258977 3:120200166 NFKBIE--GPR156 BS_6JHXXVR7 ARRIBA frameshift 56 0 low [INTERCHROMOSOMAL[chr6--chr3]],translocation NFKBIE NA GPR156 NA CosmicCensus, Oncogene NA NA NA NA +6:44260043 5:16055714 NFKBIE--RNA5SP178(22358)/MARCH11(11425) BS_6JHXXVR7 ARRIBA frameshift 3 0 medium [],translocation NFKBIE NA RNA5SP178 MARCH11 CosmicCensus, Oncogene NA NA NA NA +6:44260043 6:33490153 NFKBIE--ZBTB9(32605)/GGNBP1(49893) BS_6JHXXVR7 ARRIBA frameshift 6 1 high [],inversion NFKBIE NA ZBTB9 GGNBP1 CosmicCensus, Oncogene TranscriptionFactor NA NA NA +14:33676385 6:23303873 NPAS3--RNU6-1060P(178786)/AL139231.1(33838) BS_6JHXXVR7 ARRIBA frameshift 2 0 medium [],translocation NPAS3 NA RNU6-1060P AL139231.1 TranscriptionFactor NA NA NA NA +6:17706277 5:22212643 NUP153--CDH12 BS_6JHXXVR7 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr6--chr5]],translocation NUP153 NA CDH12 NA NA NA NA NA NA +6:17706277 5:19837638 NUP153--CDH18 BS_6JHXXVR7 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr6--chr5]],translocation/5'-5' NUP153 NA CDH18 NA NA NA NA NA NA +11:47847848 11:89113533 NUP160--GRM5 BS_6JHXXVR7 ARRIBA frameshift 23 3 high [INTRACHROMOSOMAL[chr11:40.66Mb]],duplication NUP160 NA GRM5 NA NA NA NA NA NA +11:47847848 11:89113533 NUP160--GRM5 BS_6JHXXVR7 STARFUSION other 23 3 NA [INTRACHROMOSOMAL[chr11:40.66Mb]] NUP160 NA GRM5 NA NA NA NA NA NA +11:47847848 11:89113533 NUP160--GRM5(47588)/TYR(63919) BS_6JHXXVR7 ARRIBA frameshift 26 1 high [],duplication NUP160 NA GRM5 TYR NA NA NA NA NA +7:135598825 7:116610653 NUP205--LINC01510 BS_6JHXXVR7 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr7:18.94Mb]],duplication/5'-5' NUP205 NA LINC01510 NA NA NA NA NA NA +7:135598207 7:116626770 NUP205--LINC01510(11950)/MET(45620) BS_6JHXXVR7 ARRIBA frameshift 4 2 medium [],duplication NUP205 NA LINC01510 MET NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA +11:3797400 6:44262662 NUP98--NFKBIE BS_6JHXXVR7 ARRIBA other 27 1 high [INTERCHROMOSOMAL[chr11--chr6]],translocation NUP98 NA NFKBIE NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +11:3797400 6:44260539 NUP98--NFKBIE BS_6JHXXVR7 ARRIBA other 28 0 high [INTERCHROMOSOMAL[chr11--chr6]],translocation NUP98 NA NFKBIE NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +11:3797400 6:44260539 NUP98--NFKBIE BS_6JHXXVR7 STARFUSION other 28 1 NA [INTERCHROMOSOMAL[chr11--chr6]] NUP98 NA NFKBIE NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +11:3797400 6:44262662 NUP98--NFKBIE BS_6JHXXVR7 STARFUSION other 27 1 NA [INTERCHROMOSOMAL[chr11--chr6]] NUP98 NA NFKBIE NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +5:32099862 6:7701718 PDZD2--AL390026.1(80840)/BMP6(25079) BS_6JHXXVR7 ARRIBA other 5 0 medium [],translocation PDZD2 NA AL390026.1 BMP6 NA NA NA NA NA +3:138733361 7:41494708 PIK3CB--LINC01449(361201)/INHBA(172460) BS_6JHXXVR7 ARRIBA frameshift 3 0 high [],translocation PIK3CB NA LINC01449 INHBA CosmicCensus, Kinase NA NA NA NA +3:146250960 3:148160911 PLSCR4--AC025566.1 BS_6JHXXVR7 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr3:1.91Mb]],inversion PLSCR4 NA AC025566.1 NA NA NA NA NA NA +7:108526029 7:102968117 PNPLA8--FBXL13 BS_6JHXXVR7 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:5.40Mb]],deletion PNPLA8 NA FBXL13 NA NA TumorSuppressorGene NA NA NA +7:108521476 7:102968117 PNPLA8--FBXL13 BS_6JHXXVR7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:5.40Mb]],deletion PNPLA8 NA FBXL13 NA NA TumorSuppressorGene NA NA NA +7:108502491 7:110963565 PNPLA8--IMMP2L BS_6JHXXVR7 ARRIBA in-frame 166 17 high [INTRACHROMOSOMAL[chr7:2.09Mb]],duplication PNPLA8 NA IMMP2L NA NA NA NA NA NA +7:108514144 7:110963565 PNPLA8--IMMP2L BS_6JHXXVR7 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr7:2.09Mb]],duplication PNPLA8 NA IMMP2L NA NA NA NA NA NA +7:108502491 7:110963565 PNPLA8--IMMP2L BS_6JHXXVR7 STARFUSION in-frame 162 18 NA [INTRACHROMOSOMAL[chr7:2.09Mb]] PNPLA8 NA IMMP2L NA NA NA NA NA NA +7:108502491 7:111111838 PNPLA8--LRRN3 BS_6JHXXVR7 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr7:2.52Mb]],duplication/5'-5' PNPLA8 NA LRRN3 NA NA NA NA NA NA +7:102639123 7:112004131 POLR2J2--DOCK4 BS_6JHXXVR7 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr7:9.05Mb]],duplication POLR2J2 NA DOCK4 NA NA NA NA NA NA +19:55236782 5:14860172 PPP6R1--ANKH BS_6JHXXVR7 ARRIBA frameshift 1 5 medium [INTERCHROMOSOMAL[chr19--chr5]],translocation PPP6R1 NA ANKH NA NA NA NA NA NA +19:55186231 5:24651625 PTPRH--CDH10(6647)/AC091893.1(97749) BS_6JHXXVR7 ARRIBA frameshift 17 4 medium [],translocation PTPRH NA CDH10 AC091893.1 Oncogene CosmicCensus, Oncogene NA NA NA +3:49033230 3:52398331 QRICH1--DNAH1 BS_6JHXXVR7 ARRIBA other 44 8 medium [INTRACHROMOSOMAL[chr3:3.22Mb]],duplication/5'-5' QRICH1 NA DNAH1 NA NA NA NA NA NA +17:5308822 10:26533439 RABEP1--APBB1IP BS_6JHXXVR7 ARRIBA frameshift 106 6 high [INTERCHROMOSOMAL[chr17--chr10]],translocation RABEP1 NA APBB1IP NA CosmicCensus, Oncogene NA NA NA NA +17:5308822 10:26541582 RABEP1--APBB1IP BS_6JHXXVR7 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr17--chr10]],translocation RABEP1 NA APBB1IP NA CosmicCensus, Oncogene NA NA NA NA +17:5308822 10:26533439 RABEP1--APBB1IP BS_6JHXXVR7 STARFUSION frameshift 107 6 NA [INTERCHROMOSOMAL[chr17--chr10]] RABEP1 NA APBB1IP NA CosmicCensus, Oncogene NA NA NA NA +5:34686955 16:15621911 RAI14--MARF1 BS_6JHXXVR7 ARRIBA in-frame 16 3 high [INTERCHROMOSOMAL[chr5--chr16]],translocation RAI14 NA MARF1 NA NA NA NA NA NA +5:34686955 16:15623123 RAI14--MARF1 BS_6JHXXVR7 ARRIBA frameshift 4 4 high [INTERCHROMOSOMAL[chr5--chr16]],translocation RAI14 NA MARF1 NA NA NA NA NA NA +5:34686955 16:15623126 RAI14--MARF1 BS_6JHXXVR7 ARRIBA frameshift 1 4 high [INTERCHROMOSOMAL[chr5--chr16]],translocation RAI14 NA MARF1 NA NA NA NA NA NA +5:34686955 16:15617535 RAI14--MARF1 BS_6JHXXVR7 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr5--chr16]],translocation RAI14 NA MARF1 NA NA NA NA NA NA +5:34686955 16:15620531 RAI14--MARF1 BS_6JHXXVR7 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr5--chr16]],translocation RAI14 NA MARF1 NA NA NA NA NA NA +5:34686955 16:15621911 RAI14--MARF1 BS_6JHXXVR7 STARFUSION in-frame 18 4 NA [INTERCHROMOSOMAL[chr5--chr16]] RAI14 NA MARF1 NA NA NA NA NA NA +3:49411820 3:112724045 RHOA--AC048334.1(26339)/LINC02042(12402) BS_6JHXXVR7 ARRIBA other 3 0 medium [],inversion RHOA NA AC048334.1 LINC02042 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +3:49411820 3:112965091 RHOA--CD200R1 BS_6JHXXVR7 ARRIBA other 11 2 medium [INTRACHROMOSOMAL[chr3:63.51Mb]],inversion/5'-5' RHOA NA CD200R1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +3:49411820 3:112756455 RHOA--LINC02042(7136)/AC092892.1(46023) BS_6JHXXVR7 ARRIBA other 3 1 medium [],inversion RHOA NA LINC02042 AC092892.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +5:39074111 11:30287524 RICTOR--FSHB(52263)/ARL14EP(35527) BS_6JHXXVR7 ARRIBA frameshift 5 0 medium [],translocation RICTOR NA FSHB ARL14EP NA NA NA NA NA +5:38990949 11:19832484 RICTOR--NAV2 BS_6JHXXVR7 ARRIBA frameshift 10 4 high [INTERCHROMOSOMAL[chr5--chr11]],translocation RICTOR NA NAV2 NA NA NA NA NA NA +5:39074111 5:28761600 RICTOR--RNU6-909P(136837)/AC008825.1(21078) BS_6JHXXVR7 ARRIBA frameshift 5 0 medium [],inversion RICTOR NA RNU6-909P AC008825.1 NA NA NA NA NA +2:210009736 5:15144686 RPE--AC016651.1(27679)/LINC02149(47453) BS_6JHXXVR7 ARRIBA frameshift 6 0 medium [],translocation RPE NA AC016651.1 LINC02149 NA NA NA NA NA +6:43670918 6:36572072 RSPH9--STK38(24602)/SRSF3(22281) BS_6JHXXVR7 ARRIBA other 43 0 low [],inversion RSPH9 NA STK38 SRSF3 NA Kinase NA CosmicCensus, Oncogene NA +14:39075935 11:41223008 SEC23A--LRRC4C BS_6JHXXVR7 ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr14--chr11]],translocation SEC23A NA LRRC4C NA NA NA NA NA NA +7:102301279 7:101825611 SH2B2--CUX1 BS_6JHXXVR7 ARRIBA frameshift 2 0 low [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_REARRANGEMENT:+:[1134]],inversion/3'-3' SH2B2 NA CUX1 NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +16:3588760 16:24219961 SLX4--PRKCB BS_6JHXXVR7 ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr16:20.22Mb]],deletion/3'-3' SLX4 NA PRKCB NA TumorSuppressorGene TumorSuppressorGene, CosmicCensus, Kinase NA NA NA +7:127721400 7:123496906 SND1--IQUB BS_6JHXXVR7 ARRIBA frameshift 75 4 high [INTRACHROMOSOMAL[chr7:4.12Mb]],inversion SND1 NA IQUB NA CosmicCensus NA NA NA NA +7:127721400 7:123469384 SND1--IQUB BS_6JHXXVR7 ARRIBA in-frame 15 2 high [INTRACHROMOSOMAL[chr7:4.12Mb]],inversion SND1 NA IQUB NA CosmicCensus NA NA NA NA +7:127721400 7:123457566 SND1--IQUB BS_6JHXXVR7 ARRIBA in-frame 9 1 medium [INTRACHROMOSOMAL[chr7:4.12Mb]],inversion SND1 NA IQUB NA CosmicCensus NA NA NA NA +7:127721400 7:123479970 SND1--IQUB BS_6JHXXVR7 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr7:4.12Mb]],inversion SND1 NA IQUB NA CosmicCensus NA NA NA NA +7:127721400 7:123461605 SND1--IQUB BS_6JHXXVR7 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr7:4.12Mb]],inversion SND1 NA IQUB NA CosmicCensus NA NA NA NA +7:127721400 7:123465009 SND1--IQUB BS_6JHXXVR7 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr7:4.12Mb]],inversion SND1 NA IQUB NA CosmicCensus NA NA NA NA +7:127721400 7:123496906 SND1--IQUB BS_6JHXXVR7 STARFUSION in-frame 84 9 NA [INTRACHROMOSOMAL[chr7:4.12Mb]] SND1 NA IQUB NA CosmicCensus NA NA NA NA +7:127721400 7:123469384 SND1--IQUB BS_6JHXXVR7 STARFUSION in-frame 15 9 NA [INTRACHROMOSOMAL[chr7:4.12Mb]] SND1 NA IQUB NA CosmicCensus NA NA NA NA +7:127721400 7:123457566 SND1--IQUB BS_6JHXXVR7 STARFUSION in-frame 9 9 NA [INTRACHROMOSOMAL[chr7:4.12Mb]] SND1 NA IQUB NA CosmicCensus NA NA NA NA +6:43178812 16:18559571 SRF--NOMO2 BS_6JHXXVR7 ARRIBA frameshift 5 1 medium [INTERCHROMOSOMAL[chr6--chr16]],translocation/5'-5' SRF NA NOMO2 NA TranscriptionFactor NA NA NA NA +6:35920468 14:44945928 SRPK1--KLHL28 BS_6JHXXVR7 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr6--chr14]],translocation SRPK1 NA KLHL28 NA Kinase, Kinase NA NA NA NA +6:35890895 5:12299291 SRPK1--RNU6-679P(1787)/AC106771.1(254599) BS_6JHXXVR7 ARRIBA frameshift 4 0 high [],translocation SRPK1 NA RNU6-679P AC106771.1 Kinase, Kinase NA NA NA NA +11:4023987 5:26389683 STIM1--AC025475.1 BS_6JHXXVR7 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr11--chr5]],translocation STIM1 NA AC025475.1 NA NA NA NA NA NA +11:4023987 16:4714186 STIM1--ANKS3 BS_6JHXXVR7 ARRIBA frameshift 4 1 high [HGNC_GENEFAM,INTERCHROMOSOMAL[chr11--chr16]],translocation STIM1 NA ANKS3 NA NA NA NA NA NA +11:64186270 11:64152393 STIP1--MACROD1 BS_6JHXXVR7 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr11:0.02Mb],LOCAL_INVERSION:+:-:[19166]],inversion STIP1 NA MACROD1 NA NA Oncogene NA NA NA +5:1295996 5:78510090 TERT(927)/MIR4457(13314)--LHFPL2 BS_6JHXXVR7 ARRIBA other 302 45 high [],deletion TERT MIR4457 LHFPL2 NA CosmicCensus, Oncogene, Oncogene NA NA NA NA +2:97995476 2:110091770 TMEM131--MALL BS_6JHXXVR7 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr2:12.09Mb]],duplication TMEM131 NA MALL NA NA NA NA NA NA +2:97995476 2:110125681 TMEM131--NPHP1 BS_6JHXXVR7 ARRIBA frameshift 58 10 high [INTRACHROMOSOMAL[chr2:12.13Mb]],duplication TMEM131 NA NPHP1 NA NA NA NA NA NA +2:97995476 2:110125681 TMEM131--NPHP1 BS_6JHXXVR7 STARFUSION frameshift 52 10 NA [INTRACHROMOSOMAL[chr2:12.13Mb]] TMEM131 NA NPHP1 NA NA NA NA NA NA +11:9314321 3:146419143 TMEM41B--PLSCR2 BS_6JHXXVR7 ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr11--chr3]],translocation TMEM41B NA PLSCR2 NA NA NA NA NA NA +14:44964467 6:47234898 TOGARAM1--TNFRSF21 BS_6JHXXVR7 ARRIBA in-frame 9 1 high [INTERCHROMOSOMAL[chr14--chr6]],translocation TOGARAM1 NA TNFRSF21 NA NA NA NA NA NA +14:44964467 11:1277253 TOGARAM1--TOLLIP BS_6JHXXVR7 ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr14--chr11]],translocation TOGARAM1 NA TOLLIP NA NA NA NA NA NA +17:18804266 17:15440285 TVP23B--CDRT4 BS_6JHXXVR7 ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA +7:102639123 7:112004131 UPK3BL1--DOCK4 BS_6JHXXVR7 ARRIBA in-frame 6 0 medium [INTRACHROMOSOMAL[chr7:9.08Mb]],duplication UPK3BL1 NA DOCK4 NA NA NA NA NA NA +3:115023025 3:113165206 ZBTB20--LINC02044 BS_6JHXXVR7 ARRIBA other 14 0 medium [INTRACHROMOSOMAL[chr3:1.15Mb]],inversion/3'-3' ZBTB20 NA LINC02044 NA TranscriptionFactor NA NA NA NA +16:11759669 11:23272878 ZC3H7A--AC090092.1(69717)/AC100767.2(97238) BS_6JHXXVR7 ARRIBA other 14 4 medium [],translocation ZC3H7A NA AC090092.1 AC100767.2 NA NA NA NA NA +6:37820016 6:43936364 ZFAND3--AL157371.1(84031)/AL109615.3(59359) BS_6JHXXVR7 ARRIBA frameshift 81 13 high [],deletion ZFAND3 NA AL157371.1 AL109615.3 NA NA NA NA NA +6:43348324 11:39063843 ZNF318--LINC01493(389602)/AC021723.1(97610) BS_6JHXXVR7 ARRIBA frameshift 12 1 high [],translocation ZNF318 NA LINC01493 AC021723.1 Oncogene, TranscriptionFactor NA NA NA NA +16:31723353 7:26893973 ZNF720--SKAP2 BS_6JHXXVR7 ARRIBA frameshift 12 2 high [INTERCHROMOSOMAL[chr16--chr7]],translocation ZNF720 NA SKAP2 NA NA NA NA NA NA +16:31713435 7:26893973 ZNF720--SKAP2 BS_6JHXXVR7 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr16--chr7]],translocation ZNF720 NA SKAP2 NA NA NA NA NA NA +16:31723353 7:26854890 ZNF720--SKAP2 BS_6JHXXVR7 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr16--chr7]],translocation ZNF720 NA SKAP2 NA NA NA NA NA NA +16:31723353 7:26893973 ZNF720--SKAP2 BS_6JHXXVR7 STARFUSION other 13 2 NA [INTERCHROMOSOMAL[chr16--chr7]] ZNF720 NA SKAP2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_6MY8W3H0 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_6MY8W3H0 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_6MY8W3H0 ARRIBA other 8 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_6MY8W3H0 ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_6MY8W3H0 ARRIBA frameshift 16 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_6MY8W3H0 ARRIBA frameshift 6 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_6MY8W3H0 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_6MY8W3H0 ARRIBA frameshift 34 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_6MY8W3H0 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211103602 AL590132.1--KCNH1 BS_6MY8W3H0 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_6MY8W3H0 ARRIBA frameshift 17 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_6MY8W3H0 ARRIBA frameshift 5 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_6MY8W3H0 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_6MY8W3H0 ARRIBA frameshift 26 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +18:79307234 18:79193183 ATP9B--ATP9B BS_6MY8W3H0 ARRIBA in-frame 15 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_6MY8W3H0 ARRIBA in-frame 15 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_6MY8W3H0 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +9:23762006 9:23765099 ELAVL2--ELAVL2 BS_6MY8W3H0 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_6MY8W3H0 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +11:120905493 11:120898532 GRIK4--GRIK4 BS_6MY8W3H0 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.48Mb]],duplication/non-canonical_splicing GRIK4 NA GRIK4 NA NA NA NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_6MY8W3H0 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_6MY8W3H0 ARRIBA frameshift 16 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_6MY8W3H0 ARRIBA frameshift 34 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_6MY8W3H0 ARRIBA frameshift 5 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_6MY8W3H0 ARRIBA frameshift 6 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_6MY8W3H0 ARRIBA in-frame 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_6MY8W3H0 ARRIBA frameshift 17 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_6MY8W3H0 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:211019256 KCNH1--AL590132.1 BS_6MY8W3H0 ARRIBA in-frame 1 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211082898 KCNH1--AL590132.1 BS_6MY8W3H0 ARRIBA frameshift 1 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_6MY8W3H0 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_6MY8W3H0 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_6MY8W3H0 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211103602 KCNH1--AL590132.1 BS_6MY8W3H0 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_6MY8W3H0 ARRIBA frameshift 34 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_6MY8W3H0 ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +1:196373140 1:196479238 KCNT2--KCNT2 BS_6MY8W3H0 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_6MY8W3H0 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +7:30391035 7:30350761 LINC01176--ZNRF2 BS_6MY8W3H0 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_REARRANGEMENT:+:[23193]],duplication LINC01176 NA ZNRF2 NA NA NA NA NA NA +7:30391035 7:30366035 LINC01176--ZNRF2 BS_6MY8W3H0 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_REARRANGEMENT:+:[23193]],duplication LINC01176 NA ZNRF2 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_6MY8W3H0 ARRIBA other 21 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +8:17341363 8:17373240 MTMR7--MTMR7 BS_6MY8W3H0 ARRIBA in-frame 7 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_6MY8W3H0 ARRIBA other 8 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_6MY8W3H0 ARRIBA in-frame 15 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_6MY8W3H0 ARRIBA in-frame 40 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_6MY8W3H0 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_6MY8W3H0 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_6MY8W3H0 ARRIBA other 7 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +8:50553179 8:50502778 SNTG1--SNTG1 BS_6MY8W3H0 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +3:121318540 3:121279805 STXBP5L--STXBP5L BS_6MY8W3H0 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.52Mb]],duplication/non-canonical_splicing STXBP5L NA STXBP5L NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_6MY8W3H0 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +3:28521116 3:28413056 ZCWPW2--ZCWPW2 BS_6MY8W3H0 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.19Mb]],duplication/non-canonical_splicing ZCWPW2 NA ZCWPW2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_6MZ7FRZH ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_6MZ7FRZH ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_6MZ7FRZH ARRIBA other 6 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_6MZ7FRZH ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46492682 20:46504740 AL031686.1--ZNF334 BS_6MZ7FRZH ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +11:62338167 11:3828206 ASRGL1--RHOG BS_6MZ7FRZH ARRIBA in-frame 12 0 high [INTRACHROMOSOMAL[chr11:58.50Mb]],inversion ASRGL1 NA RHOG NA NA Oncogene NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_6MZ7FRZH ARRIBA in-frame 297 5 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_6MZ7FRZH ARRIBA in-frame 29 1 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_6MZ7FRZH STARFUSION in-frame 306 5 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_6MZ7FRZH STARFUSION in-frame 31 5 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63763687 11:65665421 C11orf95--RELA(2327)/RN7SL309P(30131) BS_6MZ7FRZH ARRIBA other 8 2 medium [],deletion C11orf95 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_6MZ7FRZH ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +1:120763709 1:125121298 NBPF26--LINC01691(3540774)/AC242852.1(18221882) BS_6MZ7FRZH ARRIBA frameshift 2 0 medium [],inversion NBPF26 NA LINC01691 AC242852.1 NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_6MZ7FRZH ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96945849 12:96875118 NEDD1--CFAP54 BS_6MZ7FRZH ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96912817 12:96875118 NEDD1--CFAP54 BS_6MZ7FRZH ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_6MZ7FRZH ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +12:106750793 12:106686884 RFX4--RFX4 BS_6MZ7FRZH ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_6MZ7FRZH ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:62790178 11:134637499 TMEM223--AP004550.1(64443)/AP001999.2(33927) BS_6MZ7FRZH ARRIBA other 2 1 medium [],duplication TMEM223 NA AP004550.1 AP001999.2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_6N3AFF66 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_6N3AFF66 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_6N3AFF66 STARFUSION other 13 0 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +7:138844317 7:140783157 KIAA1549--BRAF BS_6N3AFF66 ARRIBA in-frame 14 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138844317 7:140783157 KIAA1549--BRAF BS_6N3AFF66 STARFUSION in-frame 15 0 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_6N3AFF66 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:45181082 10:45194254 AL358394.1--AL512324.3 BS_6NRTJSYK ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr10:0.01Mb],LOCAL_REARRANGEMENT:-:[5865]],duplication AL358394.1 NA AL512324.3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_6NTXGQAC ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_6NTXGQAC ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:20343075 14:49862662 AL355075.4--RN7SL2 BS_6NTXGQAC STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] AL355075.4 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_6NTXGQAC ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_6P50QTPP ARRIBA other 56 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_6P50QTPP ARRIBA other 56 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:27208246 20:11313160 ACBD5--AL049649.1(11635)/RPS11P1(32223) BS_6P50QTPP ARRIBA frameshift 3 0 medium [],translocation ACBD5 NA AL049649.1 RPS11P1 NA NA NA NA NA +10:27207383 20:11514721 ACBD5--RPS11P1(168866)/AL109837.2(21685) BS_6P50QTPP ARRIBA other 4 0 low [],translocation ACBD5 NA RPS11P1 AL109837.2 NA NA NA NA NA +9:32408651 9:13744783 ACO1--AL583785.1(257272)/LINC00583(183188) BS_6P50QTPP ARRIBA frameshift 6 0 high [],inversion ACO1 NA AL583785.1 LINC00583 NA NA NA NA NA +1:77076850 1:77062975 AL035409.1--ST6GALNAC5 BS_6P50QTPP ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:+:[2209]],duplication AL035409.1 NA ST6GALNAC5 NA NA NA NA NA NA +9:33135189 20:11822300 B4GALT1--LINC00687 BS_6P50QTPP ARRIBA frameshift 21 4 high [INTERCHROMOSOMAL[chr9--chr20]],translocation/5'-5' B4GALT1 NA LINC00687 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_6P50QTPP ARRIBA other 7 0 low [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178801793 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_6P50QTPP ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +12:81325777 12:81384244 PPFIA2--PPFIA2 BS_6P50QTPP ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.50Mb]],duplication/non-canonical_splicing PPFIA2 NA PPFIA2 NA NA NA NA NA NA +16:614964 1:225924206 RAB40C--AL117348.2 BS_6P50QTPP ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr16--chr1]],translocation RAB40C NA AL117348.2 NA NA NA NA NA NA +16:614964 1:225924206 RAB40C--PYCR2 BS_6P50QTPP ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr16--chr1]],translocation RAB40C NA PYCR2 NA NA NA NA NA NA +14:49862572 17:44915493 RN7SL2--GFAP BS_6P50QTPP STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr14--chr17]] RN7SL2 NA GFAP NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_6P50QTPP ARRIBA other 56 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:49862562 6:52995632 RN7SL2--RN7SK BS_6R7SFVV2 STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL2 NA RN7SK NA NA NA NA NA NA +7:7271844 7:7234303 AC005532.1--C1GALT1 BS_6T4JGBGY ARRIBA other 9 1 high [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA +7:7267442 7:7234303 AC005532.1--C1GALT1 BS_6T4JGBGY ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA +7:7271844 7:7234303 AC005532.1--C1GALT1 BS_6T4JGBGY STARFUSION other 9 1 NA [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]] AC005532.1 NA C1GALT1 NA NA NA NA NA NA +4:72414815 4:72442216 ADAMTS3--ADAMTS3 BS_6T4JGBGY ARRIBA frameshift 13 2 low [SELFIE,INTRACHROMOSOMAL[chr4:0.29Mb]],duplication/non-canonical_splicing ADAMTS3 NA ADAMTS3 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_6T4JGBGY ARRIBA frameshift 18 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +14:87345118 14:87441029 AL157688.1(12728)/LINC02296(7952)--LINC02296 BS_6T4JGBGY ARRIBA other 1 1 low [],duplication AL157688.1 LINC02296 LINC02296 NA NA NA NA NA NA +13:31447910 13:31437719 AL161616.2(9911)/AL161616.1(35504)--AL161616.2 BS_6T4JGBGY ARRIBA other 6 0 low [],duplication AL161616.2 AL161616.1 AL161616.2 NA NA NA NA NA NA +13:34671000 13:34682749 AL161716.1--AL161716.1(11567)/Metazoa_SRP(227796) BS_6T4JGBGY ARRIBA other 35 5 medium [],duplication AL161716.1 NA AL161716.1 Metazoa_SRP NA NA NA NA NA +9:112749787 9:112645650 AL390067.1--KIAA1958 BS_6T4JGBGY ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr9:0.08Mb],LOCAL_INVERSION:-:+:[79505]],duplication/3'-3' AL390067.1 NA KIAA1958 NA NA NA NA NA NA +2:201307519 2:201364176 ALS2CR12--ALS2CR12(6778)/TRAK2(13031) BS_6T4JGBGY ARRIBA frameshift 1 5 high [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA +11:95559144 11:95497494 AP001790.1(61591)/AP000820.1(138942)--AP001790.1 BS_6T4JGBGY ARRIBA other 28 7 high [],duplication AP001790.1 AP000820.1 AP001790.1 NA NA NA NA NA NA +6:16522627 6:16776973 ATXN1--AL137003.2(10090)/STMND1(325285) BS_6T4JGBGY ARRIBA other 1 2 high [],duplication ATXN1 NA AL137003.2 STMND1 NA NA NA NA NA +7:93972495 7:94012843 BET1--AC006378.1(1730)/AC003092.1(9990) BS_6T4JGBGY ARRIBA other 6 0 medium [],duplication BET1 NA AC006378.1 AC003092.1 NA NA NA NA NA +8:86643751 8:86647887 CNGB3--CNGB3 BS_6T4JGBGY ARRIBA frameshift 63 3 high [SELFIE,INTRACHROMOSOMAL[chr8:0.19Mb]],duplication/non-canonical_splicing CNGB3 NA CNGB3 NA NA NA NA NA NA +22:31495983 17:27212658 EIF4ENIF1--AC069061.4(128622)/AC129926.1(25201) BS_6T4JGBGY ARRIBA other 4 0 low [],translocation EIF4ENIF1 NA AC069061.4 AC129926.1 NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_6T4JGBGY ARRIBA frameshift 164 28 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_6T4JGBGY ARRIBA frameshift 8 5 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +1:210418325 1:210321630 HHAT--AL035414.1(17090)/HHAT(6622) BS_6T4JGBGY ARRIBA frameshift 3 0 medium [],duplication HHAT NA AL035414.1 HHAT NA NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_6T4JGBGY ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_6T4JGBGY ARRIBA other 3 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +9:70154148 9:70218485 MAMDC2-AS1--SMC5-AS1 BS_6T4JGBGY ARRIBA other 2 1 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr9:0.02Mb],LOCAL_REARRANGEMENT:-:[18109]],duplication MAMDC2-AS1 NA SMC5-AS1 NA NA NA NA NA NA +18:72750062 18:72865241 NETO1--NETO1 BS_6T4JGBGY ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.13Mb]],duplication/non-canonical_splicing NETO1 NA NETO1 NA NA NA NA NA NA +2:50465442 2:50620183 NRXN1--NRXN1 BS_6T4JGBGY ARRIBA frameshift 8 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:1.31Mb]],duplication/non-canonical_splicing NRXN1 NA NRXN1 NA NA NA NA NA NA +10:54527812 10:54528402 PCDH15--PCDH15 BS_6T4JGBGY ARRIBA in-frame 32 5 low [SELFIE,INTRACHROMOSOMAL[chr10:1.83Mb]],duplication/non-canonical_splicing PCDH15 NA PCDH15 NA NA NA NA NA NA +3:48765004 3:48807684 PRKAR2A--PRKAR2A BS_6T4JGBGY ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.10Mb]],duplication/non-canonical_splicing PRKAR2A NA PRKAR2A NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_6T4JGBGY ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_6T4JGBGY ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +3:181231845 6:159780370 RNU6-4P--SNORA20 BS_6T4JGBGY STARFUSION other 10 0 NA [INTERCHROMOSOMAL[chr3--chrY]] RNU6-4P NA SNORA20 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--METTL12 BS_6T4JGBGY STARFUSION other 13 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--SNORA57 BS_6T4JGBGY STARFUSION other 13 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_6T4JGBGY ARRIBA other 13 3 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +1:173573182 1:173598032 SLC9C2--SLC9C2 BS_6T4JGBGY ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.10Mb]],duplication/non-canonical_splicing SLC9C2 NA SLC9C2 NA NA NA NA NA NA +14:21360677 14:21311824 SUPT16H--RPGRIP1 BS_6T4JGBGY ARRIBA other 7 5 high [INTRACHROMOSOMAL[chr14:0.00Mb],LOCAL_INVERSION:-:+:[171]],duplication/3'-3' SUPT16H NA RPGRIP1 NA NA NA NA NA NA +2:209904965 2:209877954 UNC80--UNC80 BS_6T4JGBGY ARRIBA in-frame 20 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +1:216321883 1:216327654 USH2A--USH2A BS_6T4JGBGY ARRIBA frameshift 112 7 high [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +3:167575918 3:167664448 WDR49--WDR49(10465)/PDCD10(18850) BS_6T4JGBGY ARRIBA frameshift 1 2 high [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_6VF6VPCG ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_6VF6VPCG ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_6VF6VPCG ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16426440 4:16238771 AC097515.1--TAPT1-AS1 BS_6VPKXXMR ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16421133 4:16238771 AC097515.1--TAPT1-AS1 BS_6VPKXXMR ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +19:33373895 19:33044364 CEBPG--RHPN2 BS_6VPKXXMR ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr19:0.31Mb]],inversion CEBPG NA RHPN2 NA TranscriptionFactor NA NA NA NA +8:11845113 8:100335491 CTSB--RNF19A BS_6VPKXXMR ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr8:88.39Mb]],inversion/5'-5' CTSB NA RNF19A NA Oncogene NA NA NA NA +3:89210520 11:76757108 EPHA3--GUCY2EP(37307)/AP003119.1(2808) BS_6VPKXXMR ARRIBA frameshift 4 2 medium [],translocation EPHA3 NA GUCY2EP AP003119.1 Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA +3:89210520 11:76795609 EPHA3--TSKU BS_6VPKXXMR ARRIBA in-frame 33 7 high [INTERCHROMOSOMAL[chr3--chr11]],translocation EPHA3 NA TSKU NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA +3:89210520 11:76795609 EPHA3--TSKU BS_6VPKXXMR STARFUSION other 33 7 NA [INTERCHROMOSOMAL[chr3--chr11]] EPHA3 NA TSKU NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA +19:35543480 4:56973230 GAPDHS--NOA1 BS_6VPKXXMR ARRIBA frameshift 4 1 medium [INTERCHROMOSOMAL[chr19--chr4]],translocation GAPDHS NA NOA1 NA NA NA NA NA NA +19:35543480 4:56973230 GAPDHS--NOA1 BS_6VPKXXMR STARFUSION frameshift 7 1 NA [INTERCHROMOSOMAL[chr19--chr4]] GAPDHS NA NOA1 NA NA NA NA NA NA +15:39919855 X:71454170 GPR176--TAF1 BS_6VPKXXMR ARRIBA in-frame 4 1 high [INTERCHROMOSOMAL[chr15--chrX]],translocation GPR176 NA TAF1 NA NA Kinase NA NA NA +9:31973112 9:32405485 HMGB3P23(327952)/RNA5SP281(320446)--ACO1 BS_6VPKXXMR ARRIBA other 2 0 medium [],deletion HMGB3P23 RNA5SP281 ACO1 NA NA NA NA NA NA +5:78632264 5:77311994 LHFPL2--PDE8B BS_6VPKXXMR ARRIBA other 11 1 high [INTRACHROMOSOMAL[chr5:1.06Mb]],inversion LHFPL2 NA PDE8B NA NA NA NA NA NA +5:78648499 5:77311994 LHFPL2--PDE8B BS_6VPKXXMR ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:1.06Mb]],inversion LHFPL2 NA PDE8B NA NA NA NA NA NA +5:78632264 5:77311994 LHFPL2--PDE8B BS_6VPKXXMR STARFUSION other 11 2 NA [INTRACHROMOSOMAL[chr5:1.06Mb]] LHFPL2 NA PDE8B NA NA NA NA NA NA +5:78632264 5:77311997 LHFPL2--PDE8B BS_6VPKXXMR STARFUSION other 6 2 NA [INTRACHROMOSOMAL[chr5:1.06Mb]] LHFPL2 NA PDE8B NA NA NA NA NA NA +5:78509784 17:78063419 LHFPL2--TNRC6C BS_6VPKXXMR ARRIBA frameshift 7 1 high [INTERCHROMOSOMAL[chr5--chr17]],translocation/5'-5' LHFPL2 NA TNRC6C NA NA NA NA NA NA +11:77130652 1:185231577 MYO7A--SWT1 BS_6VPKXXMR ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr11--chr1]],translocation MYO7A NA SWT1 NA NA NA NA NA NA +20:35680737 X:62548757 NFS1--KRT8P17(4562624)/BX322784.1(230493) BS_6VPKXXMR ARRIBA frameshift 1 1 high [],translocation NFS1 NA KRT8P17 BX322784.1 NA NA NA NA NA +15:69677640 15:69563116 PCAT29--DRAIC BS_6VPKXXMR ARRIBA other 5 2 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +15:69684442 15:69563116 PCAT29--DRAIC BS_6VPKXXMR ARRIBA other 2 3 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +15:69677640 15:69563116 PCAT29--DRAIC BS_6VPKXXMR STARFUSION other 5 2 NA [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]] PCAT29 NA DRAIC NA NA NA NA NA NA +15:69756206 15:69563116 PCAT29(60456)/AC021818.2(47110)--DRAIC BS_6VPKXXMR ARRIBA other 4 1 high [],duplication PCAT29 AC021818.2 DRAIC NA NA NA NA NA NA +1:202349142 17:4780789 PPP1R12B--TM4SF5 BS_6VPKXXMR ARRIBA in-frame 11 2 high [INTERCHROMOSOMAL[chr1--chr17]],translocation PPP1R12B NA TM4SF5 NA NA NA NA NA NA +1:202349142 17:4780789 PPP1R12B--TM4SF5 BS_6VPKXXMR STARFUSION in-frame 11 2 NA [INTERCHROMOSOMAL[chr1--chr17]] PPP1R12B NA TM4SF5 NA NA NA NA NA NA +X:82367155 19:35543239 RNU6-974P(365828)/AL031313.1(130514)--TMEM147-AS1 BS_6VPKXXMR ARRIBA other 3 2 medium [],translocation RNU6-974P AL031313.1 TMEM147-AS1 NA NA NA NA NA NA +3:77098340 14:84369793 ROBO2--MTCYBP27(192705)/RNU6-976P(370149) BS_6VPKXXMR ARRIBA frameshift 4 0 medium [],translocation ROBO2 NA MTCYBP27 RNU6-976P CosmicCensus NA NA NA NA +4:118815028 2:203767828 SEC24D--KRT18P39(2235)/NPM1P33(4803) BS_6VPKXXMR ARRIBA frameshift 16 2 high [],translocation SEC24D NA KRT18P39 NPM1P33 NA NA NA NA NA +18:45483322 9:74630282 SLC14A2--RORB BS_6VPKXXMR ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr18--chr9]],translocation SLC14A2 NA RORB NA NA TranscriptionFactor NA NA NA +15:38324810 15:39977068 SPRED1--EIF2AK4 BS_6VPKXXMR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:1.58Mb]],inversion/3'-3' SPRED1 NA EIF2AK4 NA NA Kinase NA NA NA +1:185231708 1:185214290 SWT1--SWT1 BS_6VPKXXMR ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],inversion/3'-3' SWT1 NA SWT1 NA NA NA NA NA NA +14:61996542 5:25616522 SYT16--AC022140.1(170597)/RNU6-374P(84695) BS_6VPKXXMR ARRIBA frameshift 2 1 high [],translocation SYT16 NA AC022140.1 RNU6-374P NA NA NA NA NA +14:61970311 5:25647012 SYT16--AC022140.1(201087)/RNU6-374P(54205) BS_6VPKXXMR ARRIBA frameshift 2 0 medium [],translocation SYT16 NA AC022140.1 RNU6-374P NA NA NA NA NA +X:71460803 4:176044679 TAF1--MARK2P4(30262)/WDR17(21155) BS_6VPKXXMR ARRIBA frameshift 2 0 medium [],translocation TAF1 NA MARK2P4 WDR17 Kinase NA NA NA NA +X:71460803 4:176111575 TAF1--WDR17 BS_6VPKXXMR ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chrX--chr4]],translocation TAF1 NA WDR17 NA Kinase NA NA NA NA +11:79148710 7:33604865 TENM4--BBS9 BS_6VPKXXMR ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr11--chr7]],translocation TENM4 NA BBS9 NA NA NA NA NA NA +19:35543480 4:56973230 TMEM147-AS1--NOA1 BS_6VPKXXMR ARRIBA other 7 1 medium [INTERCHROMOSOMAL[chr19--chr4]],translocation/3'-3' TMEM147-AS1 NA NOA1 NA NA NA NA NA NA +19:35545064 X:82367292 TMEM147-AS1--RNU6-974P(365965)/AL031313.1(130377) BS_6VPKXXMR ARRIBA other 4 0 medium [],translocation TMEM147-AS1 NA RNU6-974P AL031313.1 NA NA NA NA NA +7:138588275 17:50491657 TRIM24--RSAD1(5682)/AC021491.1(11755) BS_6VPKXXMR ARRIBA other 22 3 medium [],translocation TRIM24 NA RSAD1 AC021491.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +14:60979519 X:76011836 TRMT5--AL451105.2(106978)/AC233982.1(18059) BS_6VPKXXMR ARRIBA frameshift 6 3 medium [],translocation TRMT5 NA AL451105.2 AC233982.1 NA NA NA NA NA +14:60980806 X:75753608 TRMT5--TTC3P1(6697)/MAGEE2(29380) BS_6VPKXXMR ARRIBA frameshift 1 1 medium [],translocation TRMT5 NA TTC3P1 MAGEE2 NA NA NA NA NA +7:30227745 7:117081072 AC007036.1(48731)/ZNRF2(56562)--ST7-AS2 BS_6WP1FHTE ARRIBA other 2 1 high [],inversion AC007036.1 ZNRF2 ST7-AS2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_6WP1FHTE ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_6WP1FHTE ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:42911915 7:130984109 AC010132.3--LINC-PINT BS_6WP1FHTE ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:88.01Mb]],duplication AC010132.3 NA LINC-PINT NA NA TumorSuppressorGene NA NA NA +7:130941413 7:116699071 AC058791.1(1752)/LINC-PINT(347)--MET BS_6WP1FHTE ARRIBA other 100 10 high [],inversion AC058791.1 LINC-PINT MET NA NA Kinase, CosmicCensus, Oncogene, Kinase TumorSuppressorGene NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_6WP1FHTE ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +15:85741495 12:49752464 AKAP13--TMBIM6 BS_6WP1FHTE ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr15--chr12]],translocation AKAP13 NA TMBIM6 NA Oncogene NA NA NA NA +13:25589699 13:25570767 ATP8A2--ATP8A2 BS_6WP1FHTE ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +7:42911915 7:130984109 C7orf25--LINC-PINT BS_6WP1FHTE ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:88.03Mb]],duplication C7orf25 NA LINC-PINT NA NA TumorSuppressorGene NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_6WP1FHTE ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_6WP1FHTE ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_6WP1FHTE ARRIBA in-frame 12 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +7:43112937 7:30191582 HECW1--AC007036.1(12568)/ZNRF2(92725) BS_6WP1FHTE ARRIBA other 3 0 medium [],duplication HECW1 NA AC007036.1 ZNRF2 NA NA NA NA NA +7:43114391 7:30157438 HECW1--AC007036.3 BS_6WP1FHTE STARFUSION other 18 5 NA [INTRACHROMOSOMAL[chr7:12.95Mb]] HECW1 NA AC007036.3 NA NA NA NA NA NA +7:43112937 7:30157438 HECW1--AC007036.3 BS_6WP1FHTE STARFUSION other 13 5 NA [INTRACHROMOSOMAL[chr7:12.95Mb]] HECW1 NA AC007036.3 NA NA NA NA NA NA +7:43112937 7:30157438 HECW1--MTURN BS_6WP1FHTE ARRIBA other 59 3 high [INTRACHROMOSOMAL[chr7:12.95Mb]],duplication HECW1 NA MTURN NA NA NA NA NA NA +7:43114391 7:30157438 HECW1--MTURN BS_6WP1FHTE ARRIBA other 37 5 high [INTRACHROMOSOMAL[chr7:12.95Mb]],duplication HECW1 NA MTURN NA NA NA NA NA NA +7:43112937 7:30157438 HECW1--MTURN BS_6WP1FHTE STARFUSION other 60 5 NA [INTRACHROMOSOMAL[chr7:12.95Mb]] HECW1 NA MTURN NA NA NA NA NA NA +7:43114391 7:30157438 HECW1--MTURN BS_6WP1FHTE STARFUSION other 37 5 NA [INTRACHROMOSOMAL[chr7:12.95Mb]] HECW1 NA MTURN NA NA NA NA NA NA +7:55411960 7:55107222 LANCL2--EGFR BS_6WP1FHTE ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr7:0.15Mb]],duplication LANCL2 NA EGFR NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:55401320 7:55119056 LANCL2--EGFR BS_6WP1FHTE ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:0.15Mb]],duplication LANCL2 NA EGFR NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:130945720 7:116699071 LINC-PINT--MET BS_6WP1FHTE ARRIBA other 78 7 high [INTRACHROMOSOMAL[chr7:14.14Mb]],inversion LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:130945720 7:116695750 LINC-PINT--MET BS_6WP1FHTE ARRIBA other 17 7 high [INTRACHROMOSOMAL[chr7:14.14Mb]],inversion LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:130945720 7:116731668 LINC-PINT--MET BS_6WP1FHTE ARRIBA other 8 1 medium [INTRACHROMOSOMAL[chr7:14.14Mb]],inversion LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:130945720 7:116724772 LINC-PINT--MET BS_6WP1FHTE ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr7:14.14Mb]],inversion LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:130984053 7:116699071 LINC-PINT--MET BS_6WP1FHTE ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:14.14Mb]],inversion LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:130945720 7:116699071 LINC-PINT--MET BS_6WP1FHTE STARFUSION other 83 9 NA [INTRACHROMOSOMAL[chr7:14.14Mb]] LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:130941413 7:116699071 LINC-PINT--MET BS_6WP1FHTE STARFUSION other 32 9 NA [INTRACHROMOSOMAL[chr7:14.14Mb]] LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:130945720 7:116695750 LINC-PINT--MET BS_6WP1FHTE STARFUSION other 19 9 NA [INTRACHROMOSOMAL[chr7:14.14Mb]] LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +13:97276409 12:18225659 MBNL2--RERGL BS_6WP1FHTE ARRIBA frameshift 13 1 high [INTERCHROMOSOMAL[chr13--chr12]],translocation/5'-5' MBNL2 NA RERGL NA TranscriptionFactor NA NA NA NA +17:16186554 17:59257122 NCOR1--GDPD1 BS_6WP1FHTE ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr17:43.00Mb]],inversion NCOR1 NA GDPD1 NA CosmicCensus, Oncogene NA NA NA NA +7:137343439 7:73328737 PTN--FKBP6 BS_6WP1FHTE ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr7:63.87Mb]],deletion/5'-5' PTN NA FKBP6 NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_6WP1FHTE ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +17:17836727 8:9720374 SREBF1--TNKS BS_6WP1FHTE ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr17--chr8]],translocation SREBF1 NA TNKS NA TranscriptionFactor NA NA NA NA +7:117130606 7:30234246 ST7--AC007036.1(55232)/ZNRF2(50061) BS_6WP1FHTE ARRIBA frameshift 196 16 high [],inversion ST7 NA AC007036.1 ZNRF2 TumorSuppressorGene NA NA NA NA +13:60494575 15:57523489 TDRD3--CGNL1 BS_6WP1FHTE ARRIBA in-frame 12 0 high [INTERCHROMOSOMAL[chr13--chr15]],translocation TDRD3 NA CGNL1 NA NA NA NA NA NA +13:60485948 15:57523489 TDRD3--CGNL1 BS_6WP1FHTE ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr13--chr15]],translocation TDRD3 NA CGNL1 NA NA NA NA NA NA +13:60494575 15:57523489 TDRD3--CGNL1 BS_6WP1FHTE STARFUSION in-frame 13 0 NA [INTERCHROMOSOMAL[chr13--chr15]] TDRD3 NA CGNL1 NA NA NA NA NA NA +7:72815380 7:137412207 TYW1B--DGKI BS_6WP1FHTE ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr7:64.55Mb]],duplication TYW1B NA DGKI NA NA NA NA NA NA +16:76736479 16:77191476 AC106729.1--MON1B BS_6YMJ621P ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr16:0.26Mb]],deletion AC106729.1 NA MON1B NA NA NA NA NA NA +4:103656194 4:103658403 TACR3--TACR3 BS_6YMJ621P ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_6YMJ621P ARRIBA other 4 1 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +7:30882993 22:26906578 AC004691.2--LINC01422 BS_70FFPA51 ARRIBA other 6 1 high [INTERCHROMOSOMAL[chr7--chr22]],translocation AC004691.2 NA LINC01422 NA NA NA NA NA NA +7:30882993 22:26920377 AC004691.2--LINC01422 BS_70FFPA51 ARRIBA other 4 1 high [INTERCHROMOSOMAL[chr7--chr22]],translocation AC004691.2 NA LINC01422 NA NA NA NA NA NA +16:76736479 16:76535545 AC106729.1--CNTNAP4 BS_70FFPA51 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr16:0.18Mb]],duplication AC106729.1 NA CNTNAP4 NA NA NA NA NA NA +16:76736479 16:76553283 AC106729.1--CNTNAP4 BS_70FFPA51 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr16:0.18Mb]],duplication AC106729.1 NA CNTNAP4 NA NA NA NA NA NA +22:24108622 22:35153197 CABIN1--LINC01399 BS_70FFPA51 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr22:10.94Mb]],deletion/5'-5' CABIN1 NA LINC01399 NA NA NA NA NA NA +6:64590223 6:64593309 EYS--EYS BS_70FFPA51 ARRIBA frameshift 19 2 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +7:32980553 7:46554209 FKBP9--AC004869.1(72631)/HMGN1P19(80405) BS_70FFPA51 ARRIBA frameshift 2 0 medium [],deletion FKBP9 NA AC004869.1 HMGN1P19 CosmicCensus NA NA NA NA +1:230219823 22:32995328 GALNT2--SYN3 BS_70FFPA51 ARRIBA other 5 1 medium [INTERCHROMOSOMAL[chr1--chr22]],translocation/5'-5' GALNT2 NA SYN3 NA NA NA NA NA NA +22:35295363 22:35139523 HMGXB4--LINC01399 BS_70FFPA51 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr22:0.03Mb],LOCAL_INVERSION:+:-:[26396]],inversion HMGXB4 NA LINC01399 NA NA NA NA NA NA +7:30882993 22:26906578 INMT-MINDY4--LINC01422 BS_70FFPA51 ARRIBA other 6 1 high [INTERCHROMOSOMAL[chr7--chr22]],translocation INMT-MINDY4 NA LINC01422 NA NA NA NA NA NA +7:30882993 22:26920377 INMT-MINDY4--LINC01422 BS_70FFPA51 ARRIBA other 4 1 high [INTERCHROMOSOMAL[chr7--chr22]],translocation INMT-MINDY4 NA LINC01422 NA NA NA NA NA NA +16:76635623 16:76535545 LINC02125--CNTNAP4 BS_70FFPA51 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr16:0.08Mb],LOCAL_REARRANGEMENT:+:[75760]],duplication LINC02125 NA CNTNAP4 NA NA NA NA NA NA +22:26726794 7:64227251 MIATNB--ZNF735(6743)/ZNF679(1223) BS_70FFPA51 ARRIBA other 1 1 medium [],translocation MIATNB NA ZNF735 ZNF679 NA TranscriptionFactor NA TranscriptionFactor NA +7:30882993 22:26906578 MINDY4--LINC01422 BS_70FFPA51 ARRIBA frameshift 6 1 high [INTERCHROMOSOMAL[chr7--chr22]],translocation MINDY4 NA LINC01422 NA NA NA NA NA NA +7:30882993 22:26920377 MINDY4--LINC01422 BS_70FFPA51 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr7--chr22]],translocation MINDY4 NA LINC01422 NA NA NA NA NA NA +7:24573593 7:3264789 MPP6--AC073316.3 BS_70FFPA51 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:21.27Mb]],inversion MPP6 NA AC073316.3 NA NA NA NA NA NA +22:29655676 22:31626016 NF2--PISD BS_70FFPA51 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr22:1.92Mb]],inversion NF2 NA PISD NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:29655676 22:31623849 NF2--PISD BS_70FFPA51 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr22:1.92Mb]],inversion NF2 NA PISD NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +2:55617144 13:99965819 PPP4R3B--ZIC5 BS_70FFPA51 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr2--chr13]],translocation PPP4R3B NA ZIC5 NA NA TranscriptionFactor NA NA NA +22:26590053 7:131875301 TPST2--NDUFB9P2(121049)/AC009518.2(17315) BS_70FFPA51 ARRIBA other 2 0 medium [],translocation TPST2 NA NDUFB9P2 AC009518.2 NA NA NA NA NA +12:57787162 12:57715760 AC025165.3--OS9 BS_7327SDAQ STARFUSION other 146 51 NA [INTRACHROMOSOMAL[chr12:0.05Mb],LOCAL_REARRANGEMENT:+:[51471]] AC025165.3 NA OS9 NA NA NA NA NA NA +8:129679928 8:129903350 AC103718.1--FAM49B BS_7327SDAQ ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr8:0.16Mb]],duplication AC103718.1 NA FAM49B NA NA NA NA NA NA +12:59373640 12:66203711 AC108721.1--IRAK3 BS_7327SDAQ ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr12:6.78Mb]],deletion/3'-3' AC108721.1 NA IRAK3 NA NA Kinase, Kinase NA NA NA +12:57729639 12:57715760 AGAP2--OS9 BS_7327SDAQ ARRIBA frameshift 26 5 medium [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:-:+:[2204]],inversion AGAP2 NA OS9 NA Oncogene NA NA NA NA +12:57729639 12:57715760 AGAP2--OS9 BS_7327SDAQ STARFUSION frameshift 27 6 NA [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:-:+:[2204]] AGAP2 NA OS9 NA Oncogene NA NA NA NA +6:112937686 6:107633514 AL360085.1(111216)/RNU6-1163P(33807)--SOBP BS_7327SDAQ ARRIBA other 3 1 high [],duplication AL360085.1 RNU6-1163P SOBP NA NA NA NA NA NA +19:47256609 19:47021006 CCDC9--NPAS1 BS_7327SDAQ ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr19:0.21Mb]],duplication CCDC9 NA NPAS1 NA NA TranscriptionFactor NA NA NA +19:47256609 19:47032278 CCDC9--NPAS1 BS_7327SDAQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr19:0.21Mb]],duplication CCDC9 NA NPAS1 NA NA TranscriptionFactor NA NA NA +20:41533050 20:36508825 CHD6--DLGAP4-AS1 BS_7327SDAQ ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr20:4.83Mb]],deletion CHD6 NA DLGAP4-AS1 NA NA NA NA NA NA +20:41533050 20:36508274 CHD6--DLGAP4-AS1 BS_7327SDAQ ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr20:4.83Mb]],deletion CHD6 NA DLGAP4-AS1 NA NA NA NA NA NA +12:132887196 11:48607585 CHFR--OR4A41P(16898)/OR4A42P(2478) BS_7327SDAQ ARRIBA frameshift 2 0 medium [],translocation CHFR NA OR4A41P OR4A42P TumorSuppressorGene, Oncogene NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_7327SDAQ ARRIBA other 11 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +5:116092700 5:119097979 COMMD10--DMXL1 BS_7327SDAQ ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr5:2.63Mb]],deletion COMMD10 NA DMXL1 NA NA NA NA NA NA +20:39010404 13:60093732 DHX35--DIAPH3 BS_7327SDAQ ARRIBA in-frame 10 0 high [INTERCHROMOSOMAL[chr20--chr13]],translocation DHX35 NA DIAPH3 NA NA NA NA NA NA +20:36500611 20:41527954 DLGAP4--CHD6 BS_7327SDAQ ARRIBA frameshift 11 2 high [INTRACHROMOSOMAL[chr20:4.87Mb]],deletion/5'-5' DLGAP4 NA CHD6 NA NA NA NA NA NA +12:120153213 12:56994486 GCN1--GPR182 BS_7327SDAQ ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr12:63.13Mb]],inversion GCN1 NA GPR182 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_7327SDAQ STARFUSION other 8 8 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +16:20029661 16:20032669 GPRC5B(143494)/GPR139(1824)--GPR139 BS_7327SDAQ ARRIBA other 4 0 medium [],duplication GPRC5B GPR139 GPR139 NA NA NA NA NA NA +12:66371694 12:57310463 GRIP1--R3HDM2 BS_7327SDAQ ARRIBA frameshift 82 16 high [INTRACHROMOSOMAL[chr12:8.92Mb]],deletion GRIP1 NA R3HDM2 NA NA NA NA NA NA +12:66371694 12:57303217 GRIP1--R3HDM2 BS_7327SDAQ ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr12:8.92Mb]],deletion GRIP1 NA R3HDM2 NA NA NA NA NA NA +12:66377174 12:57310463 GRIP1--R3HDM2 BS_7327SDAQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:8.92Mb]],deletion GRIP1 NA R3HDM2 NA NA NA NA NA NA +12:66371694 12:57310463 GRIP1--R3HDM2 BS_7327SDAQ STARFUSION other 84 17 NA [INTRACHROMOSOMAL[chr12:8.92Mb]] GRIP1 NA R3HDM2 NA NA NA NA NA NA +4:3013828 4:2961354 GRK4--NOP14-AS1 BS_7327SDAQ ARRIBA frameshift 2 1 low [INTRACHROMOSOMAL[chr4:0.00Mb],LOCAL_REARRANGEMENT:+:[1870]],duplication GRK4 NA NOP14-AS1 NA Kinase NA NA NA NA +12:66211597 12:59373487 IRAK3--AC108721.1 BS_7327SDAQ ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr12:6.78Mb]],duplication/5'-5' IRAK3 NA AC108721.1 NA Kinase, Kinase NA NA NA NA +7:27991909 7:3950923 JAZF1--SDK1 BS_7327SDAQ ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:23.56Mb]],inversion JAZF1 NA SDK1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_7327SDAQ ARRIBA frameshift 3 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +12:57757084 12:57653976 MARCH9--B4GALNT1(20621)/RPL13AP23(20689) BS_7327SDAQ ARRIBA frameshift 6 0 medium [],duplication MARCH9 NA B4GALNT1 RPL13AP23 NA NA NA NA NA +4:2963125 4:2996805 NOP14--GRK4 BS_7327SDAQ ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr4:0.00Mb],LOCAL_INVERSION:-:+:[223]],duplication/5'-5' NOP14 NA GRK4 NA NA Kinase NA NA NA +10:87326630 10:87925513 NUTM2A-AS1--PTEN BS_7327SDAQ ARRIBA other 18 10 high [INTRACHROMOSOMAL[chr10:0.52Mb]],inversion NUTM2A-AS1 NA PTEN NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +10:87326630 10:87925513 NUTM2A-AS1--PTEN BS_7327SDAQ STARFUSION other 17 10 NA [INTRACHROMOSOMAL[chr10:0.52Mb]] NUTM2A-AS1 NA PTEN NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +7:121928221 7:116699071 PTPRZ1--MET BS_7327SDAQ ARRIBA in-frame 3 0 low [ChimerPub,FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr7:5.07Mb]],duplication PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:121928221 7:116695750 PTPRZ1--MET BS_7327SDAQ ARRIBA frameshift 3 0 low [ChimerPub,FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr7:5.07Mb]],duplication PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:121928221 7:116731668 PTPRZ1--MET BS_7327SDAQ ARRIBA frameshift 1 0 low [ChimerPub,FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr7:5.07Mb]],duplication PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +12:57395749 12:66406428 R3HDM2--GRIP1 BS_7327SDAQ ARRIBA other 63 7 high [INTRACHROMOSOMAL[chr12:8.92Mb]],duplication R3HDM2 NA GRIP1 NA NA NA NA NA NA +12:57430720 12:66406428 R3HDM2--GRIP1 BS_7327SDAQ ARRIBA other 21 4 high [INTRACHROMOSOMAL[chr12:8.92Mb]],duplication R3HDM2 NA GRIP1 NA NA NA NA NA NA +12:57395749 12:66379436 R3HDM2--GRIP1 BS_7327SDAQ ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr12:8.92Mb]],duplication R3HDM2 NA GRIP1 NA NA NA NA NA NA +12:57430720 12:66379436 R3HDM2--GRIP1 BS_7327SDAQ ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr12:8.92Mb]],duplication R3HDM2 NA GRIP1 NA NA NA NA NA NA +12:57395749 12:66406428 R3HDM2--GRIP1 BS_7327SDAQ STARFUSION other 67 12 NA [INTRACHROMOSOMAL[chr12:8.92Mb]] R3HDM2 NA GRIP1 NA NA NA NA NA NA +12:57430720 12:66406428 R3HDM2--GRIP1 BS_7327SDAQ STARFUSION other 22 12 NA [INTRACHROMOSOMAL[chr12:8.92Mb]] R3HDM2 NA GRIP1 NA NA NA NA NA NA +12:57395749 12:66379436 R3HDM2--GRIP1 BS_7327SDAQ STARFUSION other 8 12 NA [INTRACHROMOSOMAL[chr12:8.92Mb]] R3HDM2 NA GRIP1 NA NA NA NA NA NA +14:49862575 6:52995796 RN7SL2--7SK BS_7327SDAQ STARFUSION other 5 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862572 6:52995786 RN7SL2--7SK BS_7327SDAQ STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +20:36916722 20:36175551 SAMHD1--EPB41L1 BS_7327SDAQ ARRIBA in-frame 5 2 high [INTRACHROMOSOMAL[chr20:0.66Mb]],inversion SAMHD1 NA EPB41L1 NA NA NA NA NA NA +20:36916722 20:36173764 SAMHD1--EPB41L1 BS_7327SDAQ ARRIBA frameshift 2 2 high [INTRACHROMOSOMAL[chr20:0.66Mb]],inversion SAMHD1 NA EPB41L1 NA NA NA NA NA NA +10:12143195 4:37356366 SEC61A2--NWD2 BS_7327SDAQ ARRIBA frameshift 3 2 high [INTERCHROMOSOMAL[chr10--chr4]],translocation SEC61A2 NA NWD2 NA NA NA NA NA NA +15:57091891 15:58013520 TCF12--ALDH1A2 BS_7327SDAQ ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr15:0.65Mb]],deletion/5'-5' TCF12 NA ALDH1A2 NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene NA NA NA +15:57091891 15:57774934 TCF12--POLR2M BS_7327SDAQ ARRIBA frameshift 9 2 high [INTRACHROMOSOMAL[chr15:0.41Mb]],deletion TCF12 NA POLR2M NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +15:57091891 15:57777595 TCF12--POLR2M BS_7327SDAQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:0.41Mb]],deletion TCF12 NA POLR2M NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +17:34581143 17:43530181 TMEM132E--ETV4 BS_7327SDAQ ARRIBA in-frame 10 3 high [INTRACHROMOSOMAL[chr17:8.89Mb]],inversion TMEM132E NA ETV4 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +17:34581143 17:43529236 TMEM132E--ETV4 BS_7327SDAQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:8.89Mb]],inversion TMEM132E NA ETV4 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +12:57787162 12:57715760 TSFM--OS9 BS_7327SDAQ ARRIBA in-frame 423 49 high [FA_CancerSupp,INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_REARRANGEMENT:+:[61032]],duplication TSFM NA OS9 NA NA NA NA NA NA +12:57787162 12:57715760 TSFM--OS9 BS_7327SDAQ STARFUSION in-frame 433 51 NA [FA_CancerSupp,INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_REARRANGEMENT:+:[61032]] TSFM NA OS9 NA NA NA NA NA NA +17:18804266 17:15440285 TVP23B--CDRT4 BS_7327SDAQ ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA +18:25322008 17:58955649 ZNF521--PPM1E BS_7327SDAQ ARRIBA frameshift 14 5 high [INTERCHROMOSOMAL[chr18--chr17]],translocation ZNF521 NA PPM1E NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene NA NA NA +18:25322008 17:58955649 ZNF521--PPM1E BS_7327SDAQ STARFUSION frameshift 14 7 NA [INTERCHROMOSOMAL[chr18--chr17]] ZNF521 NA PPM1E NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene NA NA NA +18:25322008 17:58732481 ZNF521--RAD51C BS_7327SDAQ ARRIBA frameshift 3 2 high [INTERCHROMOSOMAL[chr18--chr17]],translocation ZNF521 NA RAD51C NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene NA NA NA +18:25322008 17:58732484 ZNF521--RAD51C BS_7327SDAQ ARRIBA frameshift 2 2 high [INTERCHROMOSOMAL[chr18--chr17]],translocation ZNF521 NA RAD51C NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_742RHK1M ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +1:227139576 14:100935772 CDC42BPA--MEG8 BS_742RHK1M ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr1--chr14]],translocation CDC42BPA NA MEG8 NA Kinase NA NA NA NA +X:152345581 X:152458262 GABRA3--GABRA3(6904)/KRT8P8(21315) BS_742RHK1M ARRIBA frameshift 6 0 medium [],duplication GABRA3 NA GABRA3 KRT8P8 NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_742RHK1M ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_74FS6GMW ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_74FS6GMW ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:38067929 7:102239320 AL138752.2--CUX1 BS_74FS6GMW ARRIBA frameshift 3 1 medium [INTERCHROMOSOMAL[chr9--chr7]],translocation AL138752.2 NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +9:37974622 7:102227367 AL138752.2--CUX1 BS_74FS6GMW ARRIBA in-frame 1 1 medium [INTERCHROMOSOMAL[chr9--chr7]],translocation AL138752.2 NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +14:20343074 14:49862664 AL355075.4--RN7SL2 BS_74FS6GMW STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] AL355075.4 NA RN7SL2 NA NA NA NA NA NA +X:35956196 X:35941283 CFAP47--CFAP47 BS_74FS6GMW ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +7:102234240 9:38016131 CUX1--AL138752.2 BS_74FS6GMW ARRIBA frameshift 3 2 medium [INTERCHROMOSOMAL[chr7--chr9]],translocation CUX1 NA AL138752.2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:102234240 9:38016131 CUX1--SHB BS_74FS6GMW ARRIBA frameshift 3 2 medium [INTERCHROMOSOMAL[chr7--chr9]],translocation CUX1 NA SHB NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +4:161455004 4:161500134 FSTL5--FSTL5 BS_74FS6GMW ARRIBA frameshift 39 3 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +14:33055994 14:32152423 NPAS3--ARHGAP5 BS_74FS6GMW ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr14:0.78Mb]],duplication NPAS3 NA ARHGAP5 NA TranscriptionFactor CosmicCensus NA NA NA +14:32939366 14:32152423 NPAS3--ARHGAP5 BS_74FS6GMW ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr14:0.78Mb]],duplication NPAS3 NA ARHGAP5 NA TranscriptionFactor CosmicCensus NA NA NA +14:33055994 14:32152423 NPAS3--ARHGAP5 BS_74FS6GMW STARFUSION frameshift 11 2 NA [INTRACHROMOSOMAL[chr14:0.78Mb]] NPAS3 NA ARHGAP5 NA TranscriptionFactor CosmicCensus NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_74FS6GMW ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:38067929 7:102239320 SHB--CUX1 BS_74FS6GMW ARRIBA frameshift 3 1 medium [INTERCHROMOSOMAL[chr9--chr7]],translocation SHB NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +9:37974622 7:102227367 SHB--CUX1 BS_74FS6GMW ARRIBA in-frame 1 1 medium [INTERCHROMOSOMAL[chr9--chr7]],translocation SHB NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +3:32818932 12:55493158 TRIM71--AC122685.1 BS_74FS6GMW ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr3--chr12]],translocation TRIM71 NA AC122685.1 NA NA NA NA NA NA +21:14825522 21:15043573 AF127577.4--NRIP1 BS_74G5K7JF ARRIBA other 1 1 medium [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA +21:15014344 21:15043574 AF127577.4--NRIP1 BS_74G5K7JF ARRIBA other 2 0 low [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA +11:63765807 2:24726589 C11orf95--NCOA1 BS_74G5K7JF ARRIBA in-frame 49 0 high [INTERCHROMOSOMAL[chr11--chr2]],translocation C11orf95 NA NCOA1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +11:63765807 2:24726589 C11orf95--NCOA1 BS_74G5K7JF STARFUSION in-frame 49 0 NA [INTERCHROMOSOMAL[chr11--chr2]] C11orf95 NA NCOA1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +6:34091883 6:34133859 GRM4--GRM4 BS_74G5K7JF ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +10:94032252 10:94005450 PLCE1--PIPSL(43910)/PLCE1(25362) BS_74G5K7JF ARRIBA frameshift 5 11 high [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +X:141118028 14:100897944 RNU6-3P--MEG8 BS_74G5K7JF STARFUSION other 7 0 NA [INTERCHROMOSOMAL[chrX--chr14]] RNU6-3P NA MEG8 NA NA NA NA NA NA +X:141118027 17:38852911 RNU6-3P--RPL23 BS_74G5K7JF STARFUSION other 8 0 NA [FA_CancerSupp,INTERCHROMOSOMAL[chrX--chr17]] RNU6-3P NA RPL23 NA NA NA NA NA NA +X:141118027 17:38852911 RNU6-3P--SNORA21 BS_74G5K7JF STARFUSION other 8 0 NA [INTERCHROMOSOMAL[chrX--chr17]] RNU6-3P NA SNORA21 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--METTL12 BS_74G5K7JF STARFUSION other 21 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893593 11:62665431 RNU6-9--SNORA57 BS_74G5K7JF STARFUSION other 21 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_769BDPDB ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_769BDPDB ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:7804692 5:7784365 ADCY2--ADCY2 BS_769BDPDB ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA +14:49862558 6:52995633 RN7SL2--7SK BS_769BDPDB STARFUSION other 5 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862572 6:52995746 RN7SL2--7SK BS_769BDPDB STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_769BDPDB ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:17229391 14:49586588 VIM-AS1--AL139099.5 BS_769BDPDB STARFUSION other 15 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA AL139099.5 NA NA NA NA NA NA +10:17229391 14:49586588 VIM-AS1--RN7SL1 BS_769BDPDB STARFUSION other 15 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA RN7SL1 NA NA NA NA NA NA +2:65601157 5:79130933 AC007389.3--BHMT BS_77317DY4 ARRIBA other 7 0 medium [FA_CancerSupp,INTERCHROMOSOMAL[chr2--chr5]],translocation AC007389.3 NA BHMT NA NA NA NA NA NA +9:110605859 9:110604418 AL592463.1(640)/MUSK(62912)--AL592463.1 BS_77317DY4 ARRIBA other 5 0 medium [],duplication AL592463.1 MUSK AL592463.1 NA NA NA Kinase, Kinase NA NA +8:43180201 5:79130933 HGSNAT--BHMT BS_77317DY4 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr8--chr5]],translocation/3'-3' HGSNAT NA BHMT NA NA NA NA NA NA +3:195214895 9:35658016 RNU6-25P--RMRP BS_77317DY4 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr3--chr9]],translocation RNU6-25P NA RMRP NA NA Oncogene NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_77317DY4 ARRIBA other 13 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_775HDFNY ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_775HDFNY ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_775HDFNY ARRIBA other 10 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +7:101251895 7:101256734 FIS1--FIS1(4418)/RNU6-1104P(13204) BS_775HDFNY ARRIBA frameshift 13 0 high [],duplication FIS1 NA FIS1 RNU6-1104P NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_775HDFNY ARRIBA other 7 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_775HDFNY ARRIBA other 3 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_775HDFNY ARRIBA in-frame 6 4 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_775HDFNY ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995906 14:20343301 7SK--AL355075.4 BS_77CDMEY4 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL355075.4 NA NA NA NA NA NA +6:52995911 14:20343301 7SK--RPPH1 BS_77CDMEY4 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_77CDMEY4 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_77CDMEY4 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_77CDMEY4 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995854 8:98921342 7SK--RN7SKP85 BS_78QX3XDF STARFUSION other 18 0 NA [INTERCHROMOSOMAL[chr1--chr8]] 7SK NA RN7SKP85 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_78QX3XDF ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_78QX3XDF ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_78QX3XDF ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +9:137917431 9:137913180 CACNA1B--CACNA1B BS_78QX3XDF ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.25Mb]],duplication/non-canonical_splicing CACNA1B NA CACNA1B NA NA NA NA NA NA +9:109247756 9:109265024 EPB41L4B--EPB41L4B BS_78QX3XDF ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.15Mb]],duplication/non-canonical_splicing EPB41L4B NA EPB41L4B NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_78QX3XDF STARFUSION other 15 12 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_78QX3XDF ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_78QX3XDF ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_78QX3XDF ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_7B89YR6K ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_7B89YR6K ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_7B89YR6K ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +6:114540730 6:114371592 AL138830.1(4855)/RNU6-475P(326143)--HDAC2-AS2 BS_7B89YR6K ARRIBA other 2 0 medium [],duplication AL138830.1 RNU6-475P HDAC2-AS2 NA NA NA NA NA NA +17:68370524 17:68306943 ARSG--ARSG BS_7B89YR6K ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.16Mb]],duplication/non-canonical_splicing ARSG NA ARSG NA NA NA NA NA NA +12:123859268 12:123853206 DNAH10--DNAH10 BS_7B89YR6K ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_7B89YR6K ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_7B89YR6K ARRIBA frameshift 3 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_7B89YR6K ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +4:118143684 4:118053756 NDST3--NDST3 BS_7B89YR6K ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing NDST3 NA NDST3 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_7B89YR6K ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +1:5927649 1:5961949 NPHP4--NPHP4 BS_7B89YR6K ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing NPHP4 NA NPHP4 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_7B89YR6K ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +X:91879273 X:91875136 PCDH11X--PCDH11X BS_7B89YR6K ARRIBA frameshift 3 0 medium [SELFIE,INTRACHROMOSOMAL[chrX:0.84Mb]],duplication PCDH11X NA PCDH11X NA NA NA NA NA NA +12:70656704 12:70662605 PTPRR--PTPRR BS_7B89YR6K ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_7B89YR6K ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +3:77602491 3:77564954 ROBO2--ROBO2 BS_7B89YR6K ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_7B89YR6K ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_7B89YR6K ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +12:21815763 12:21894174 ABCC9--ABCC9 BS_7BTZQKYY ARRIBA frameshift 23 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing ABCC9 NA ABCC9 NA NA NA NA NA NA +22:21008779 22:21013184 AC002472.2--AC002472.3 BS_7BTZQKYY ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[1931]],duplication AC002472.2 NA AC002472.3 NA NA NA NA NA NA +X:13988690 X:14003404 AC003035.1--AC003035.1(14584)/GEMIN8(4875) BS_7BTZQKYY ARRIBA other 5 1 medium [],duplication AC003035.1 NA AC003035.1 GEMIN8 NA NA NA NA NA +19:1321456 19:1323678 AC005330.1--AC005330.1(832)/MUM1(31033) BS_7BTZQKYY ARRIBA other 4 2 medium [],duplication AC005330.1 NA AC005330.1 MUM1 NA NA NA NA NA +7:7271844 7:7234303 AC005532.1--C1GALT1 BS_7BTZQKYY ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA +7:7271844 7:7238255 AC005532.1--C1GALT1 BS_7BTZQKYY ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA +7:7267442 7:7234303 AC005532.1--C1GALT1 BS_7BTZQKYY ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_7BTZQKYY ARRIBA other 93 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_7BTZQKYY ARRIBA other 93 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:199070153 2:198579708 AC020718.1--AC019330.1 BS_7BTZQKYY ARRIBA other 33 5 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +2:199071746 2:198579708 AC020718.1--AC019330.1 BS_7BTZQKYY ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +2:199071420 2:198579708 AC020718.1--AC019330.1 BS_7BTZQKYY ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +15:35940927 15:35857987 AC021351.1--DPH6-AS1 BS_7BTZQKYY ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr15:0.08Mb],LOCAL_INVERSION:-:+:[80166]],duplication/3'-3' AC021351.1 NA DPH6-AS1 NA NA NA NA NA NA +3:107380585 3:107462735 AC063944.1--LINC01990 BS_7BTZQKYY ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr3:0.01Mb],LOCAL_INVERSION:-:+:[9626]],duplication/5'-5' AC063944.1 NA LINC01990 NA NA NA NA NA NA +12:27185443 12:27030734 AC092747.2--MED21 BS_7BTZQKYY ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_REARRANGEMENT:+:[55567]],duplication AC092747.2 NA MED21 NA NA NA NA NA NA +12:27135086 12:27046154 AC092747.2--MED21 BS_7BTZQKYY ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_REARRANGEMENT:+:[55567]],duplication AC092747.2 NA MED21 NA NA NA NA NA NA +12:27123381 12:27046154 AC092747.2--MED21 BS_7BTZQKYY ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_REARRANGEMENT:+:[55567]],duplication AC092747.2 NA MED21 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_7BTZQKYY ARRIBA other 29 2 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +3:167140689 3:167282495 AC092965.1(74369)/ZBBX(99598)--ZBBX BS_7BTZQKYY ARRIBA other 18 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +4:16426440 4:16320065 AC097515.1--TAPT1-AS1 BS_7BTZQKYY ARRIBA other 8 0 high [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16238771 AC097515.1--TAPT1-AS1 BS_7BTZQKYY ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16421133 4:16238771 AC097515.1--TAPT1-AS1 BS_7BTZQKYY ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16400533 4:16256257 AC097515.1--TAPT1-AS1 BS_7BTZQKYY ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16288884 AC097515.1--TAPT1-AS1 BS_7BTZQKYY ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_7BTZQKYY ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_7BTZQKYY ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_7BTZQKYY ARRIBA in-frame 104 9 high [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +14:34909043 14:34926527 AL121603.2(32584)/SRP54-AS1(11815)--SRP54-AS1 BS_7BTZQKYY ARRIBA other 1 1 low [],duplication AL121603.2 SRP54-AS1 SRP54-AS1 NA NA NA NA NA NA +6:135810770 6:135659984 AL133319.1(2304)/PDE7B(40926)--LINC00271 BS_7BTZQKYY ARRIBA other 2 0 low [],duplication AL133319.1 PDE7B LINC00271 NA NA NA NA NA NA +9:5719431 9:5831027 AL136980.1--ERMP1 BS_7BTZQKYY ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr9:0.04Mb],LOCAL_REARRANGEMENT:-:[44832]],duplication AL136980.1 NA ERMP1 NA NA NA NA NA NA +6:44376473 6:44352726 AL353588.1--AL353588.1 BS_7BTZQKYY ARRIBA other 202 15 high [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing AL353588.1 NA AL353588.1 NA NA NA NA NA NA +6:19301943 6:19325798 AL357052.1--AL022068.1 BS_7BTZQKYY ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr6:0.00Mb],LOCAL_REARRANGEMENT:-:[3967]],duplication AL357052.1 NA AL022068.1 NA NA NA NA NA NA +6:19320918 6:19388638 AL357052.1--AL022068.1 BS_7BTZQKYY ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr6:0.00Mb],LOCAL_REARRANGEMENT:-:[3967]],duplication AL357052.1 NA AL022068.1 NA NA NA NA NA NA +6:19193413 6:19325798 AL589647.1(49253)/AL357052.1(96906)--AL022068.1 BS_7BTZQKYY ARRIBA other 3 0 low [],duplication AL589647.1 AL357052.1 AL022068.1 NA NA NA NA NA NA +X:103461518 X:103517525 AL606763.1(53219)/Z69733.1(36005)--RAB40A BS_7BTZQKYY ARRIBA other 3 0 high [],duplication AL606763.1 Z69733.1 RAB40A NA NA NA NA NA NA +12:45378113 12:45331295 ANO6--ANO6 BS_7BTZQKYY ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.22Mb]],duplication/non-canonical_splicing ANO6 NA ANO6 NA NA NA NA NA NA +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_7BTZQKYY ARRIBA frameshift 5 0 medium [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +9:32946753 9:32989895 ASS1P12--APTX BS_7BTZQKYY ARRIBA other 1 3 medium [INTRACHROMOSOMAL[chr9:0.03Mb],LOCAL_INVERSION:+:-:[25384]],duplication/3'-3' ASS1P12 NA APTX NA NA NA NA NA NA +9:32966676 9:32989895 ASS1P12(19454)/APTX(5930)--APTX BS_7BTZQKYY ARRIBA other 8 0 medium [],duplication ASS1P12 APTX APTX NA NA NA NA NA NA +12:25119145 12:25245395 CASC1--KRAS BS_7BTZQKYY ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_REARRANGEMENT:-:[9627]],duplication CASC1 NA KRAS NA TumorSuppressorGene CosmicCensus, Oncogene NA NA NA +12:25119159 12:25245395 CASC1--KRAS BS_7BTZQKYY ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_REARRANGEMENT:-:[9627]],duplication CASC1 NA KRAS NA TumorSuppressorGene CosmicCensus, Oncogene NA NA NA +12:25144365 12:25245395 CASC1--KRAS BS_7BTZQKYY ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_REARRANGEMENT:-:[9627]],duplication CASC1 NA KRAS NA TumorSuppressorGene CosmicCensus, Oncogene NA NA NA +12:25147001 12:25245395 CASC1--KRAS BS_7BTZQKYY ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_REARRANGEMENT:-:[9627]],duplication CASC1 NA KRAS NA TumorSuppressorGene CosmicCensus, Oncogene NA NA NA +6:109227649 6:109203715 CCDC162P--CCDC162P BS_7BTZQKYY ARRIBA other 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.19Mb]],duplication/non-canonical_splicing CCDC162P NA CCDC162P NA NA NA NA NA NA +15:92974950 15:92924321 CHD2--CHD2 BS_7BTZQKYY ARRIBA frameshift 12 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_7BTZQKYY ARRIBA other 94 0 high [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_7BTZQKYY ARRIBA in-frame 14 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_7BTZQKYY ARRIBA frameshift 20 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +12:123859268 12:123853206 DNAH10--DNAH10 BS_7BTZQKYY ARRIBA frameshift 15 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA +17:11905809 17:11891777 DNAH9--DNAH9 BS_7BTZQKYY ARRIBA frameshift 84 10 high [SELFIE,INTRACHROMOSOMAL[chr17:0.37Mb]],duplication/non-canonical_splicing DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA +20:54610523 20:54554933 DOK5--DOK5 BS_7BTZQKYY ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA +6:138889031 6:138842979 ECT2L--ECT2L BS_7BTZQKYY ARRIBA frameshift 41 5 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA +14:88704860 14:88795130 EML5--EML5(2378)/AL121768.1(24478) BS_7BTZQKYY ARRIBA frameshift 4 0 medium [],duplication EML5 NA EML5 AL121768.1 NA NA NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_7BTZQKYY ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +11:92524948 11:92350549 FAT3--NDUFB11P1(14053)/FAT3(1547) BS_7BTZQKYY ARRIBA frameshift 5 0 medium [],duplication FAT3 NA NDUFB11P1 FAT3 CosmicCensus NA NA CosmicCensus NA +1:15401663 1:15380701 FHAD1(1380)/AL031283.1(1316)--FHAD1 BS_7BTZQKYY ARRIBA other 3 2 low [],duplication FHAD1 AL031283.1 FHAD1 NA NA NA NA NA NA +7:114570881 7:114162944 FOXP2--FOXP2 BS_7BTZQKYY ARRIBA frameshift 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.61Mb]],duplication/non-canonical_splicing FOXP2 NA FOXP2 NA TranscriptionFactor TranscriptionFactor NA NA NA +9:97079287 9:97095256 GAS2L1P2--VN1R51P(618)/FAM220CP(26403) BS_7BTZQKYY ARRIBA other 5 0 medium [],duplication GAS2L1P2 NA VN1R51P FAM220CP NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_7BTZQKYY STARFUSION other 36 36 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_7BTZQKYY ARRIBA other 17 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +14:59475869 14:59565275 L3HYPDH--CCDC175 BS_7BTZQKYY ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +18:7032066 18:7046367 LAMA1--LAMA1 BS_7BTZQKYY ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA +2:8054865 2:8326424 LINC00298--LINC00299 BS_7BTZQKYY ARRIBA other 2 1 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00298 NA LINC00299 NA NA NA NA NA NA +6:132134483 6:132090446 LINC01013--AL021408.1 BS_7BTZQKYY ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA +5:3531753 5:3566558 LINC01019--LINC01019(30464)/IRX1(29496) BS_7BTZQKYY ARRIBA other 7 2 high [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA +16:51779720 16:51771564 LINC01571(6547)/C16orf97(225767)--LINC01571 BS_7BTZQKYY ARRIBA other 2 0 low [],duplication LINC01571 C16orf97 LINC01571 NA NA NA NA NA NA +8:10480192 8:10446339 LINCR-0001--AC104964.2(8027)/LINCR-0001(28226) BS_7BTZQKYY ARRIBA other 3 0 medium [],duplication LINCR-0001 NA AC104964.2 LINCR-0001 NA NA NA NA NA +12:25503738 12:25549546 LMNTD1--LMNTD1 BS_7BTZQKYY ARRIBA frameshift 38 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +7:134221918 7:134148238 LRGUK--LRGUK BS_7BTZQKYY ARRIBA in-frame 15 5 low [SELFIE,INTRACHROMOSOMAL[chr7:0.14Mb]],duplication/non-canonical_splicing LRGUK NA LRGUK NA Oncogene Oncogene NA NA NA +14:60019260 14:59997656 LRRC9--LRRC9 BS_7BTZQKYY ARRIBA frameshift 18 3 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +10:88132553 10:88667287 MED6P1(82730)/AL353149.1(126576)--LIPF BS_7BTZQKYY ARRIBA other 7 0 high [],deletion MED6P1 AL353149.1 LIPF NA NA NA NA NA NA +20:46474501 20:46504740 MKRN7P--ZNF334 BS_7BTZQKYY ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_7BTZQKYY ARRIBA frameshift 20 2 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +12:95710441 12:95833084 NTN4--AC090001.1 BS_7BTZQKYY ARRIBA frameshift 7 2 high [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:95665810 12:95833084 NTN4--AC090001.1 BS_7BTZQKYY ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:95682707 12:95833084 NTN4--AC090001.1 BS_7BTZQKYY ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:95670078 12:95833084 NTN4--AC090001.1 BS_7BTZQKYY ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:95737866 12:95833084 NTN4--AC090001.1 BS_7BTZQKYY ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:95786939 12:95833084 NTN4--AC090001.1 BS_7BTZQKYY ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:95737866 12:95795657 NTN4--AC090001.1 BS_7BTZQKYY ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:95710441 12:95787468 NTN4--NTN4 BS_7BTZQKYY ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing NTN4 NA NTN4 NA NA NA NA NA NA +1:176595595 1:176555407 PAPPA2--PAPPA2 BS_7BTZQKYY ARRIBA frameshift 10 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing PAPPA2 NA PAPPA2 NA Oncogene Oncogene NA NA NA +22:43999673 22:43963286 PARVB--PNPLA3 BS_7BTZQKYY ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr22:0.03Mb],LOCAL_REARRANGEMENT:+:[34723]],duplication PARVB NA PNPLA3 NA Oncogene NA NA NA NA +10:94171496 10:93999624 PLCE1--PIPSL(38084)/PLCE1(31188) BS_7BTZQKYY ARRIBA frameshift 1 2 medium [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_7BTZQKYY ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +14:30191299 14:30205740 PRKD1--AL133372.2 BS_7BTZQKYY ARRIBA other 13 1 medium [INTRACHROMOSOMAL[chr14:0.24Mb]],duplication PRKD1 NA AL133372.2 NA Oncogene, Kinase NA NA NA NA +14:30047710 14:30205740 PRKD1--AL133372.2 BS_7BTZQKYY ARRIBA frameshift 3 3 medium [INTRACHROMOSOMAL[chr14:0.24Mb]],duplication PRKD1 NA AL133372.2 NA Oncogene, Kinase NA NA NA NA +12:80510443 12:80443752 PTPRQ--PTPRQ BS_7BTZQKYY ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRQ NA PTPRQ NA NA NA NA NA NA +9:3262935 9:3293258 RFX3--RFX3 BS_7BTZQKYY ARRIBA in-frame 23 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.31Mb]],duplication/non-canonical_splicing RFX3 NA RFX3 NA TranscriptionFactor TranscriptionFactor NA NA NA +12:106750793 12:106686884 RFX4--RFX4 BS_7BTZQKYY ARRIBA frameshift 30 4 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:192184353 1:192239790 RGS18--RGS18(53975)/AL513175.1(6918) BS_7BTZQKYY ARRIBA other 3 0 medium [],duplication RGS18 NA RGS18 AL513175.1 NA NA NA NA NA +10:88631228 10:88602576 RPL7P34(12294)/LIPF(33213)--LIPJ BS_7BTZQKYY ARRIBA other 14 3 high [],duplication RPL7P34 LIPF LIPJ NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_7BTZQKYY ARRIBA other 93 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:12644705 7:12566813 SCIN--AC013470.2(24591)/AC005281.1(3312) BS_7BTZQKYY ARRIBA frameshift 1 1 low [],duplication SCIN NA AC013470.2 AC005281.1 NA NA NA NA NA +5:76301545 5:76300729 SV2C--SV2C BS_7BTZQKYY ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.27Mb]],duplication/non-canonical_splicing SV2C NA SV2C NA NA NA NA NA NA +4:16323036 4:16288884 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_7BTZQKYY ARRIBA other 10 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:145017611 2:145016368 TEX41--TEX41 BS_7BTZQKYY ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.60Mb]],duplication/non-canonical_splicing TEX41 NA TEX41 NA NA NA NA NA NA +15:39587321 15:39741900 THBS1--FSIP1 BS_7BTZQKYY ARRIBA other 4 0 medium [ChimerSeq,INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_INVERSION:+:-:[565]],duplication/3'-3' THBS1 NA FSIP1 NA TumorSuppressorGene, Oncogene NA NA NA NA +2:119685754 2:119604672 TMEM177--CFAP221 BS_7BTZQKYY ARRIBA frameshift 10 1 medium [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:+:[16916]],duplication TMEM177 NA CFAP221 NA NA NA NA NA NA +5:110568447 5:110642371 TMEM232--TMEM232 BS_7BTZQKYY ARRIBA frameshift 25 4 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA +8:93820236 8:93786223 TMEM67(1002)/AC084346.1(14218)--TMEM67 BS_7BTZQKYY ARRIBA other 2 0 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +1:88528836 1:88570859 uc_338(8666)/PKN2-AS1(8677)--PKN2-AS1 BS_7BTZQKYY ARRIBA other 2 2 medium [],duplication uc_338 PKN2-AS1 PKN2-AS1 NA NA NA NA NA NA +6:128611887 6:129049918 Y_RNA(27396)/AL080315.1(27301)--LAMA2 BS_7BTZQKYY ARRIBA other 4 0 medium [],deletion Y_RNA AL080315.1 LAMA2 NA NA NA NA NA NA +11:120337275 11:128490576 ARHGEF12--ETS1 BS_7BW0YRPY ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr11:7.97Mb]],inversion ARHGEF12 NA ETS1 NA TumorSuppressorGene, CosmicCensus, Oncogene Oncogene, TranscriptionFactor NA NA NA +11:70362488 10:121902620 PPFIA1--ATE1 BS_7BW0YRPY ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr11--chr10]],translocation PPFIA1 NA ATE1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_7C40TRCY ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_7C40TRCY ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_7C40TRCY ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +22:16669462 22:16679493 ANKRD62P1-PARP4P3--AC005301.1 BS_7C40TRCY ARRIBA other 8 0 high [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[476]],duplication ANKRD62P1-PARP4P3 NA AC005301.1 NA NA NA NA NA NA +22:16675123 22:16677376 ANKRD62P1-PARP4P3--AC005301.1 BS_7C40TRCY ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[476]],duplication ANKRD62P1-PARP4P3 NA AC005301.1 NA NA NA NA NA NA +7:139341522 7:140292701 C7orf55-LUC7L2--PPP1R2P6 BS_7C40TRCY ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr7:0.87Mb]],deletion C7orf55-LUC7L2 NA PPP1R2P6 NA NA NA NA NA NA +7:139341522 7:140292701 FMC1--AC005377.1(9781)/PPP1R2P6(51) BS_7C40TRCY ARRIBA frameshift 2 0 medium [],deletion FMC1 NA AC005377.1 PPP1R2P6 NA NA NA NA NA +7:139341522 7:140292701 FMC1--PPP1R2P6 BS_7C40TRCY ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr7:0.95Mb]],deletion FMC1 NA PPP1R2P6 NA NA NA NA NA NA +6:114469299 6:114371592 HDAC2-AS2--HDAC2-AS2 BS_7C40TRCY ARRIBA other 12 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_7C40TRCY ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +5:145703975 5:145935763 PRELID2--GRXCR2 BS_7C40TRCY ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr5:0.02Mb],LOCAL_REARRANGEMENT:-:[23152]],duplication PRELID2 NA GRXCR2 NA NA NA NA NA NA +5:145796442 5:145935763 PRELID2--GRXCR2 BS_7C40TRCY ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr5:0.02Mb],LOCAL_REARRANGEMENT:-:[23152]],duplication PRELID2 NA GRXCR2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_7C40TRCY ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_7C40TRCY ARRIBA other 16 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +14:72594327 14:72619984 AC004828.1--DPF3 BS_7FWZ518S ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_7FWZ518S ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_7FWZ518S ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:176137278 5:176119545 AC139491.5--FAM153B BS_7FWZ518S ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:+:[4899]],duplication AC139491.5 NA FAM153B NA NA NA NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_7FWZ518S ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +17:81035308 17:69505780 BAIAP2--MAP2K6 BS_7FWZ518S ARRIBA frameshift 14 1 high [INTRACHROMOSOMAL[chr17:11.49Mb]],duplication BAIAP2 NA MAP2K6 NA NA Kinase, Kinase NA NA NA +17:81036961 17:69505780 BAIAP2--MAP2K6 BS_7FWZ518S ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr17:11.49Mb]],duplication BAIAP2 NA MAP2K6 NA NA Kinase, Kinase NA NA NA +17:81035308 17:69505780 BAIAP2--MAP2K6 BS_7FWZ518S STARFUSION frameshift 14 1 NA [INTRACHROMOSOMAL[chr17:11.49Mb]] BAIAP2 NA MAP2K6 NA NA Kinase, Kinase NA NA NA +3:37417492 3:37383226 C3orf35--GOLGA4(16475)/C3orf35(3043) BS_7FWZ518S ARRIBA frameshift 1 0 low [],duplication C3orf35 NA GOLGA4 C3orf35 NA NA NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_7FWZ518S ARRIBA in-frame 14 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_7FWZ518S ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_7FWZ518S ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100547744 CAVIN4--MSANTD3-TMEFF1 BS_7FWZ518S ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_7FWZ518S ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_7FWZ518S ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100547744 CAVIN4--TMEFF1 BS_7FWZ518S ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_7FWZ518S ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +5:24535112 5:24537674 CDH10--CDH10 BS_7FWZ518S ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +18:65824831 18:65809704 CDH7--CDH7 BS_7FWZ518S ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_7FWZ518S ARRIBA other 29 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_7FWZ518S ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +6:65490594 6:65495993 EYS--EYS BS_7FWZ518S ARRIBA frameshift 65 11 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_7FWZ518S ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_7FWZ518S ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +12:132247910 12:132262625 GALNT9--GALNT9 BS_7FWZ518S ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing GALNT9 NA GALNT9 NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_7FWZ518S ARRIBA other 3 0 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +14:59456438 14:59565275 GPR135--CCDC175 BS_7FWZ518S ARRIBA other 4 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59551436 GPR135--CCDC175 BS_7FWZ518S ARRIBA other 4 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59551436 GPR135--CCDC175 BS_7FWZ518S ARRIBA other 1 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59543454 GPR135--CCDC175 BS_7FWZ518S ARRIBA other 1 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_7FWZ518S ARRIBA frameshift 25 1 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_7FWZ518S ARRIBA frameshift 12 4 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_7FWZ518S ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:43493180 7:43450828 HECW1--HECW1 BS_7FWZ518S ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_7FWZ518S ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_7FWZ518S ARRIBA other 7 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +14:59475869 14:59551436 L3HYPDH--CCDC175 BS_7FWZ518S ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59568380 L3HYPDH--CCDC175 BS_7FWZ518S ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +8:10480192 8:10436262 LINCR-0001--AC104964.2 BS_7FWZ518S ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:+:[36253]],duplication LINCR-0001 NA AC104964.2 NA NA NA NA NA NA +12:27762965 12:27714780 MANSC4--MRPS35 BS_7FWZ518S ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_INVERSION:-:+:[6443]],duplication/3'-3' MANSC4 NA MRPS35 NA NA NA NA NA NA +17:43831244 1:20302064 MPP3--AL020998.1 BS_7FWZ518S ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr17--chr1]],translocation/5'-5' MPP3 NA AL020998.1 NA NA NA NA NA NA +17:43831244 1:20302064 MPP3--VWA5B1 BS_7FWZ518S ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr17--chr1]],translocation MPP3 NA VWA5B1 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_7FWZ518S ARRIBA other 2 0 medium [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +15:76009200 15:76052983 NRG4--NRG4 BS_7FWZ518S ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +3:155744840 3:156118211 PLCH1--KCNAB1 BS_7FWZ518S ARRIBA other 8 0 high [INTRACHROMOSOMAL[chr3:0.29Mb]],inversion PLCH1 NA KCNAB1 NA NA NA NA NA NA +3:48847335 3:41398264 PRKAR2A--ULK4 BS_7FWZ518S ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr3:6.78Mb]],deletion PRKAR2A NA ULK4 NA NA Kinase, Kinase NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_7FWZ518S ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_7FWZ518S ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_7FWZ518S ARRIBA other 4 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_7FWZ518S ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:114895509 1:114874506 SYCP1--SYCP1 BS_7FWZ518S ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_7FWZ518S ARRIBA other 9 3 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +1:216175252 1:216207431 USH2A--USH2A BS_7FWZ518S ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +8:70713576 8:71199140 XKR9--AC022858.1 BS_7FWZ518S ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:0.37Mb]],deletion XKR9 NA AC022858.1 NA NA NA NA NA NA +12:123974020 12:123645455 ZNF664--GTF2H3 BS_7FWZ518S ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:0.31Mb]],duplication ZNF664 NA GTF2H3 NA TranscriptionFactor NA NA NA NA +12:123988138 12:123645455 ZNF664--GTF2H3 BS_7FWZ518S ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:0.31Mb]],duplication ZNF664 NA GTF2H3 NA TranscriptionFactor NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_7G42J2SK ARRIBA other 4 0 low [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +3:167099408 3:167282495 AC092965.1(33088)/ZBBX(140879)--ZBBX BS_7G42J2SK ARRIBA other 2 2 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +11:37458407 11:71226669 AC104042.1(760540)/SNORA31(243718)--SHANK2 BS_7G42J2SK ARRIBA other 1 0 low [],inversion AC104042.1 SNORA31 SHANK2 NA NA NA NA NA NA +5:179272911 5:178618603 ADAMTS2--CLK4 BS_7G42J2SK ARRIBA in-frame 221 30 high [INTRACHROMOSOMAL[chr5:0.48Mb]],inversion/5'-5' ADAMTS2 NA CLK4 NA NA Kinase, Kinase NA NA NA +6:167962567 6:167914168 AFDN--AFDN BS_7G42J2SK ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.15Mb]],duplication/non-canonical_splicing AFDN NA AFDN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_7G42J2SK ARRIBA other 2 4 high [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46485529 20:46504740 AL031686.1--ZNF334 BS_7G42J2SK ARRIBA other 1 3 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46492682 20:46509751 AL031686.1--ZNF334 BS_7G42J2SK ARRIBA other 1 3 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46492682 20:46504740 AL031686.1--ZNF334 BS_7G42J2SK ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46496711 20:46504740 AL031686.1--ZNF334 BS_7G42J2SK ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +18:14791491 18:14757815 ANKRD30B--ANKRD30B BS_7G42J2SK ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.12Mb]],duplication/non-canonical_splicing ANKRD30B NA ANKRD30B NA NA NA NA NA NA +2:97224879 2:97167577 ANKRD36--ANKRD36 BS_7G42J2SK ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.15Mb]],duplication/non-canonical_splicing ANKRD36 NA ANKRD36 NA NA NA NA NA NA +2:95853709 2:95935644 ANKRD36C--ANKRD36C BS_7G42J2SK ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.15Mb]],duplication/non-canonical_splicing ANKRD36C NA ANKRD36C NA NA NA NA NA NA +11:63765807 11:65655935 C11orf95--RELA BS_7G42J2SK ARRIBA in-frame 98 1 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63768484 11:65655935 C11orf95--RELA BS_7G42J2SK ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65655935 C11orf95--RELA BS_7G42J2SK STARFUSION in-frame 116 1 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:115504271 11:112757890 CADM1--AP003063.1(136161)/AP003100.1(29414) BS_7G42J2SK ARRIBA frameshift 5 2 high [],deletion CADM1 NA AP003063.1 AP003100.1 TumorSuppressorGene NA NA NA NA +11:115504271 11:22359413 CADM1--SLC17A6 BS_7G42J2SK ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr11:92.79Mb]],inversion CADM1 NA SLC17A6 NA TumorSuppressorGene NA NA NA NA +12:75282251 12:75316434 CAPS2--CAPS2 BS_7G42J2SK ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.11Mb]],duplication/non-canonical_splicing CAPS2 NA CAPS2 NA NA NA NA NA NA +2:39179187 2:39246232 CDKL4--CDKL4(16644)/MAP4K3(3034) BS_7G42J2SK ARRIBA frameshift 2 1 high [],duplication CDKL4 NA CDKL4 MAP4K3 Kinase, Kinase Kinase, Kinase NA Kinase NA +15:92974950 15:92955423 CHD2--CHD2 BS_7G42J2SK ARRIBA in-frame 92 11 high [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +9:121168321 9:121158855 CNTRL--CNTRL BS_7G42J2SK ARRIBA frameshift 15 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.10Mb]],duplication/non-canonical_splicing CNTRL NA CNTRL NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +14:39348977 14:39326864 CTAGE5--CTAGE5 BS_7G42J2SK ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.16Mb]],duplication/non-canonical_splicing CTAGE5 NA CTAGE5 NA NA NA NA NA NA +15:51463379 15:51476719 DMXL2--DMXL2 BS_7G42J2SK ARRIBA frameshift 11 4 low [SELFIE,INTRACHROMOSOMAL[chr15:0.18Mb]],duplication/non-canonical_splicing DMXL2 NA DMXL2 NA NA NA NA NA NA +3:57357176 3:57363786 DNAH12--DNAH12 BS_7G42J2SK ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +2:84781653 2:84706896 DNAH6--DNAH6 BS_7G42J2SK ARRIBA frameshift 14 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.30Mb]],duplication/non-canonical_splicing DNAH6 NA DNAH6 NA NA NA NA NA NA +2:195881795 2:195907009 DNAH7--DNAH7 BS_7G42J2SK ARRIBA in-frame 57 8 high [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA +2:224814320 2:224853122 DOCK10--DOCK10 BS_7G42J2SK ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.28Mb]],duplication/non-canonical_splicing DOCK10 NA DOCK10 NA NA NA NA NA NA +6:56485312 6:56501693 DST--DST BS_7G42J2SK ARRIBA in-frame 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing DST NA DST NA Oncogene Oncogene NA NA NA +1:21089138 12:121827519 EIF4G3--SETD1B BS_7G42J2SK ARRIBA other 8 0 high [INTERCHROMOSOMAL[chr1--chr12]],translocation EIF4G3 NA SETD1B NA NA CosmicCensus NA NA NA +4:48580865 4:48596000 FRYL--FRYL BS_7G42J2SK ARRIBA in-frame 19 2 low [SELFIE,INTRACHROMOSOMAL[chr4:0.28Mb]],duplication/non-canonical_splicing FRYL NA FRYL NA Oncogene Oncogene NA NA NA +9:105472005 9:105464236 FSD1L--FSD1L BS_7G42J2SK ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.10Mb]],duplication/non-canonical_splicing FSD1L NA FSD1L NA NA NA NA NA NA +11:120511887 11:80515838 GRIK4--AP006295.1(187927)/RNU6-544P(12122) BS_7G42J2SK ARRIBA other 5 0 high [],inversion GRIK4 NA AP006295.1 RNU6-544P NA NA NA NA NA +1:91273712 1:91316184 HFM1--HFM1 BS_7G42J2SK ARRIBA frameshift 15 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing HFM1 NA HFM1 NA NA NA NA NA NA +14:58512627 14:58450579 KIAA0586--KIAA0586 BS_7G42J2SK ARRIBA in-frame 3 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing KIAA0586 NA KIAA0586 NA NA NA NA NA NA +7:152162117 7:152167378 KMT2C--KMT2C BS_7G42J2SK ARRIBA frameshift 17 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.30Mb]],duplication/non-canonical_splicing KMT2C NA KMT2C NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +7:105102194 7:105066727 KMT2E--KMT2E BS_7G42J2SK ARRIBA frameshift 11 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing KMT2E NA KMT2E NA NA NA NA NA NA +18:6961586 18:6999997 LAMA1--LAMA1 BS_7G42J2SK ARRIBA frameshift 4 3 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA +21:45293522 21:45289351 LINC00205--BX322557.1 BS_7G42J2SK STARFUSION other 9 3 NA [INTRACHROMOSOMAL[chr21:0.00Mb],LOCAL_REARRANGEMENT:+:[1547]] LINC00205 NA BX322557.1 NA NA NA NA NA NA +14:60019260 14:59959818 LRRC9--LRRC9 BS_7G42J2SK ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +14:50440013 14:50448832 MAP4K5--MAP4K5 BS_7G42J2SK ARRIBA in-frame 14 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing MAP4K5 NA MAP4K5 NA Kinase Kinase NA NA NA +9:13126516 9:13190299 MPDZ--MPDZ BS_7G42J2SK ARRIBA in-frame 14 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.17Mb]],duplication/non-canonical_splicing MPDZ NA MPDZ NA NA NA NA NA NA +13:35196302 13:35171272 NBEA--NBEA BS_7G42J2SK ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.73Mb]],duplication/non-canonical_splicing NBEA NA NBEA NA CosmicCensus CosmicCensus NA NA NA +4:118251569 4:118338314 NDST3--PRSS12 BS_7G42J2SK ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_INVERSION:+:-:[21390]],duplication/3'-3' NDST3 NA PRSS12 NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_7G42J2SK ARRIBA frameshift 16 2 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96937393 12:96764151 NEDD1--CFAP54 BS_7G42J2SK ARRIBA frameshift 1 3 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96920125 12:96554182 NEDD1--CFAP54 BS_7G42J2SK ARRIBA in-frame 1 3 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96937393 12:96644178 NEDD1--CFAP54 BS_7G42J2SK ARRIBA frameshift 1 3 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96940537 12:96693722 NEDD1--CFAP54 BS_7G42J2SK ARRIBA frameshift 1 3 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96940537 12:96784717 NEDD1--CFAP54 BS_7G42J2SK ARRIBA in-frame 1 3 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96920125 12:96784717 NEDD1--CFAP54 BS_7G42J2SK ARRIBA frameshift 1 3 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96920125 12:96786675 NEDD1--CFAP54 BS_7G42J2SK ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96940537 12:96792329 NEDD1--CFAP54 BS_7G42J2SK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_7G42J2SK STARFUSION frameshift 15 3 NA [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]] NEDD1 NA CFAP54 NA NA NA NA NA NA +3:27115940 3:27141582 NEK10--NEK10 BS_7G42J2SK ARRIBA frameshift 9 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr3:0.26Mb]],duplication/non-canonical_splicing NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA +14:26472320 14:26480143 NOVA1--NOVA1 BS_7G42J2SK ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing NOVA1 NA NOVA1 NA NA NA NA NA NA +11:72013391 11:119968855 NUMA1--AP001994.1(146726)/AP001360.1(19099) BS_7G42J2SK ARRIBA frameshift 31 7 medium [],duplication NUMA1 NA AP001994.1 AP001360.1 CosmicCensus, Oncogene NA NA NA NA +3:52648344 3:52679726 PBRM1--PBRM1 BS_7G42J2SK ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.14Mb]],duplication/non-canonical_splicing PBRM1 NA PBRM1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +10:94171496 10:93999624 PLCE1--PIPSL(38084)/PLCE1(31188) BS_7G42J2SK ARRIBA frameshift 1 6 high [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +11:70378195 11:70354301 PPFIA1--PPFIA1 BS_7G42J2SK ARRIBA frameshift 12 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr11:0.11Mb]],duplication/non-canonical_splicing PPFIA1 NA PPFIA1 NA NA NA NA NA NA +8:68090715 8:68069033 PREX2--PREX2 BS_7G42J2SK ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.28Mb]],duplication/non-canonical_splicing PREX2 NA PREX2 NA CosmicCensus CosmicCensus NA NA NA +5:139393371 11:93034752 PROB1--MTNR1B(49686)/AP002371.1(17643) BS_7G42J2SK ARRIBA other 1 2 medium [],translocation PROB1 NA MTNR1B AP002371.1 NA NA NA NA NA +13:19730239 13:19851957 PSPC1--ZMYM5 BS_7G42J2SK ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_7G42J2SK ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +11:73716251 11:115605843 RAB6A--AP003174.1(5504)/snoU13(21239) BS_7G42J2SK ARRIBA frameshift 1 0 low [],inversion RAB6A NA AP003174.1 snoU13 NA NA NA NA NA +11:73716251 11:17089271 RAB6A--PIK3C2A BS_7G42J2SK ARRIBA frameshift 7 2 high [INTRACHROMOSOMAL[chr11:56.47Mb]],inversion/5'-5' RAB6A NA PIK3C2A NA NA Kinase NA NA NA +11:65658287 11:119972923 RELA--AP001994.1(150794)/AP001360.1(15031) BS_7G42J2SK ARRIBA frameshift 26 2 high [],inversion RELA NA AP001994.1 AP001360.1 Oncogene, TranscriptionFactor NA NA NA NA +16:53664870 16:53687965 RPGRIP1L--RPGRIP1L BS_7G42J2SK ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr16:0.11Mb]],duplication/non-canonical_splicing RPGRIP1L NA RPGRIP1L NA NA NA NA NA NA +15:76701758 15:76771954 SCAPER--SCAPER BS_7G42J2SK ARRIBA in-frame 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.56Mb]],duplication/non-canonical_splicing SCAPER NA SCAPER NA NA NA NA NA NA +11:71224697 11:37416200 SHANK2--AC104042.1(718333)/SNORA31(285925) BS_7G42J2SK ARRIBA other 19 5 high [],inversion SHANK2 NA AC104042.1 SNORA31 NA NA NA NA NA +6:145919348 6:145927277 SHPRH--SHPRH BS_7G42J2SK ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing SHPRH NA SHPRH NA TumorSuppressorGene TumorSuppressorGene NA NA NA +1:183551190 1:183533164 SMG7--SMG7 BS_7G42J2SK ARRIBA in-frame 3 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing SMG7 NA SMG7 NA NA NA NA NA NA +17:72081921 17:72085045 SOX9-AS1--SOX9-AS1 BS_7G42J2SK ARRIBA other 5 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing SOX9-AS1 NA SOX9-AS1 NA NA NA NA NA NA +1:117990861 1:118087008 SPAG17--SPAG17 BS_7G42J2SK ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing SPAG17 NA SPAG17 NA NA NA NA NA NA +4:26764737 4:26666333 TBC1D19(9386)/STIM2(92941)--TBC1D19 BS_7G42J2SK ARRIBA other 1 0 low [],duplication TBC1D19 STIM2 TBC1D19 NA NA NA NA NA NA +14:56616027 14:56585001 TMEM260--TMEM260 BS_7G42J2SK ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.16Mb]],duplication/non-canonical_splicing TMEM260 NA TMEM260 NA NA NA NA NA NA +8:9770262 8:9734865 TNKS--TNKS BS_7G42J2SK ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.23Mb]],duplication/non-canonical_splicing TNKS NA TNKS NA NA NA NA NA NA +2:229795179 2:229805883 TRIP12--TRIP12 BS_7G42J2SK ARRIBA frameshift 52 6 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.16Mb]],duplication/non-canonical_splicing TRIP12 NA TRIP12 NA NA NA NA NA NA +2:99105359 2:99110915 TSGA10--TSGA10 BS_7G42J2SK ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.16Mb]],duplication/non-canonical_splicing TSGA10 NA TSGA10 NA NA NA NA NA NA +1:10137205 1:10129392 UBE4B--UBE4B BS_7G42J2SK ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing UBE4B NA UBE4B NA TumorSuppressorGene TumorSuppressorGene NA NA NA +8:102304043 8:102347092 UBR5--UBR5 BS_7G42J2SK ARRIBA in-frame 15 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.16Mb]],duplication/non-canonical_splicing UBR5 NA UBR5 NA CosmicCensus CosmicCensus NA NA NA +13:95863629 13:95895304 UGGT2--UGGT2 BS_7G42J2SK ARRIBA frameshift 13 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr13:0.25Mb]],duplication/non-canonical_splicing UGGT2 NA UGGT2 NA NA NA NA NA NA +1:55145998 1:55148570 USP24--USP24 BS_7G42J2SK ARRIBA frameshift 13 5 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing USP24 NA USP24 NA Oncogene Oncogene NA NA NA +2:61314585 2:61333971 USP34--USP34 BS_7G42J2SK ARRIBA in-frame 12 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.28Mb]],duplication/non-canonical_splicing USP34 NA USP34 NA NA NA NA NA NA +15:61880609 15:61910305 VPS13C--VPS13C BS_7G42J2SK ARRIBA in-frame 31 6 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.21Mb]],duplication/non-canonical_splicing VPS13C NA VPS13C NA NA NA NA NA NA +4:176139974 4:176128738 WDR17--WDR17 BS_7G42J2SK ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing WDR17 NA WDR17 NA NA NA NA NA NA +8:31116528 8:31076173 WRN--WRN BS_7G42J2SK ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.14Mb]],duplication/non-canonical_splicing WRN NA WRN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +2:71406262 2:71398701 ZNF638--ZNF638 BS_7G42J2SK ARRIBA frameshift 24 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.16Mb]],duplication/non-canonical_splicing ZNF638 NA ZNF638 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_7GJT4A6A ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +3:130941699 3:139716289 ATP2C1--AC110716.1(26947)/AC016933.1(120931) BS_7GJT4A6A ARRIBA frameshift 9 1 high [],inversion ATP2C1 NA AC110716.1 AC016933.1 NA NA NA NA NA +3:130941699 3:139638062 ATP2C1--NMNAT3 BS_7GJT4A6A ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr3:8.54Mb]],inversion ATP2C1 NA NMNAT3 NA NA NA NA NA NA +3:185152628 3:11358418 C3orf70--ATG7 BS_7GJT4A6A ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr3:173.52Mb]],inversion C3orf70 NA ATG7 NA NA NA NA NA NA +3:184347032 3:17641209 FAM131A--TBC1D5 BS_7GJT4A6A ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr3:166.59Mb]],inversion FAM131A NA TBC1D5 NA NA NA NA NA NA +3:56666260 3:77642671 FAM208A--ROBO2 BS_7GJT4A6A ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr3:19.22Mb]],inversion FAM208A NA ROBO2 NA NA CosmicCensus NA NA NA +2:45843063 7:150410160 PRKCE--AC073111.4 BS_7GJT4A6A ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr2--chr7]],translocation PRKCE NA AC073111.4 NA TumorSuppressorGene, Kinase NA NA NA NA +2:45843063 7:150410160 PRKCE--AC073111.5 BS_7GJT4A6A ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr2--chr7]],translocation PRKCE NA AC073111.5 NA TumorSuppressorGene, Kinase NA NA NA NA +3:136417885 3:150870394 STAG1--CLRN1-AS1 BS_7GJT4A6A ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr3:14.33Mb]],inversion STAG1 NA CLRN1-AS1 NA CosmicCensus, Oncogene NA NA NA NA +7:157139338 7:133475328 UBE3C--EXOC4 BS_7GJT4A6A ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:23.07Mb]],duplication UBE3C NA EXOC4 NA NA Oncogene NA NA NA +3:184826231 3:184824545 VPS8--VPS8 BS_7GJT4A6A ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.24Mb]],duplication/non-canonical_splicing VPS8 NA VPS8 NA NA NA NA NA NA +15:35940927 15:35857987 AC021351.1--DPH6-AS1 BS_7H4RFCW9 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr15:0.08Mb],LOCAL_INVERSION:-:+:[80166]],duplication/3'-3' AC021351.1 NA DPH6-AS1 NA NA NA NA NA NA +5:140402273 5:140243305 ANKHD1--CYSTM1 BS_7H4RFCW9 ARRIBA frameshift 2 0 low [CCLE,FA_CancerSupp,INTRACHROMOSOMAL[chr5:0.12Mb]],duplication ANKHD1 NA CYSTM1 NA NA NA NA NA NA +5:140402273 5:140243305 ANKHD1-EIF4EBP3--CYSTM1 BS_7H4RFCW9 ARRIBA frameshift 2 0 low [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr5:0.12Mb]],duplication ANKHD1-EIF4EBP3 NA CYSTM1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_7N0B2CY1 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_7N0B2CY1 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_7N0B2CY1 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_7N0B2CY1 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +20:54610523 20:54554933 DOK5--DOK5 BS_7N0B2CY1 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_7N0B2CY1 ARRIBA in-frame 34 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_7N0B2CY1 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +7:138911146 7:138912460 KIAA1549--KIAA1549 BS_7N0B2CY1 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.15Mb]],duplication/non-canonical_splicing KIAA1549 NA KIAA1549 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +4:118143684 4:118053756 NDST3--NDST3 BS_7N0B2CY1 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing NDST3 NA NDST3 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_7N0B2CY1 ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_7N0B2CY1 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_7P83Z28P ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_7P83Z28P ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:79668168 16:3311753 AC023968.2(107864)/AC023968.1(174)--ZNF75A BS_7P83Z28P ARRIBA other 2 0 medium [],translocation AC023968.2 AC023968.1 ZNF75A NA NA TranscriptionFactor NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_7P83Z28P ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:22127402 9:22112320 CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_7P83Z28P ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +3:178859489 3:178967161 KCNMB2-AS1--KCNMB2-AS1(106756)/ZMAT3(50062) BS_7P83Z28P ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178859489 3:178909706 KCNMB2-AS1--KCNMB2-AS1(49301)/ZMAT3(107517) BS_7P83Z28P ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_7P83Z28P ARRIBA in-frame 11 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +14:38762924 14:38334252 LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_7P83Z28P ARRIBA other 1 1 high [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA +1:58527261 1:58539310 OMA1--OMA1 BS_7P83Z28P ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing OMA1 NA OMA1 NA NA NA NA NA NA +10:94171496 10:94005450 PLCE1--PIPSL(43910)/PLCE1(25362) BS_7P83Z28P ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_7P83Z28P ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_7T1J3KET ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_7T1J3KET ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_7T1J3KET ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +14:62779728 14:63016954 KCNH5--KCNH5 BS_7T1J3KET ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.40Mb]],duplication/non-canonical_splicing KCNH5 NA KCNH5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_7T1J3KET ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_7WNSZNE3 ARRIBA other 15 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +10:102344182 10:102258929 GBF1--GBF1 BS_7WNSZNE3 ARRIBA frameshift 16 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr10:0.14Mb]],duplication/non-canonical_splicing GBF1 NA GBF1 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_7WNSZNE3 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:153749008 7:149909705 PAXBP1P1(299133)/DPP6(138089)--AC092681.1 BS_7WNSZNE3 ARRIBA other 3 0 medium [],inversion PAXBP1P1 DPP6 AC092681.1 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_7WNSZNE3 ARRIBA other 10 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_7XQRH69M ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_7XQRH69M ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +22:16669462 22:16679493 ANKRD62P1-PARP4P3--AC005301.1 BS_7XQRH69M ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[476]],duplication ANKRD62P1-PARP4P3 NA AC005301.1 NA NA NA NA NA NA +5:145796442 5:145935763 PRELID2--GRXCR2 BS_7XQRH69M ARRIBA frameshift 1 1 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr5:0.02Mb],LOCAL_REARRANGEMENT:-:[23152]],duplication PRELID2 NA GRXCR2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_7XQRH69M ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_7XRN3CFX ARRIBA other 62 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_7XRN3CFX ARRIBA other 62 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_7XRN3CFX ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_7XRN3CFX ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_7XRN3CFX ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_7XRN3CFX ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_7XRN3CFX ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +18:79253541 18:79193183 ATP9B--ATP9B BS_7XRN3CFX ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_7XRN3CFX ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +5:24535112 5:24537674 CDH10--CDH10 BS_7XRN3CFX ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_7XRN3CFX ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_7XRN3CFX ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_7XRN3CFX ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_7XRN3CFX ARRIBA in-frame 28 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_7XRN3CFX ARRIBA frameshift 4 0 medium [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_7XRN3CFX ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_7XRN3CFX ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_7XRN3CFX ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_7XRN3CFX ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210797508 1:211107377 KCNH1--AL590132.1 BS_7XRN3CFX ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_7XRN3CFX ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_7XRN3CFX ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +3:178801793 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_7XRN3CFX ARRIBA other 3 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +2:8382200 2:8392968 LINC00299--LINC00299(9347)/AC011747.2(150624) BS_7XRN3CFX ARRIBA other 8 0 medium [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_7XRN3CFX ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_7XRN3CFX ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_7XRN3CFX ARRIBA frameshift 12 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +9:21838010 13:86165885 MTAP--AL354994.1 BS_7XRN3CFX ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr9--chr13]],translocation/5'-5' MTAP NA AL354994.1 NA TumorSuppressorGene NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_7XRN3CFX ARRIBA other 4 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_7XRN3CFX ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_7XRN3CFX ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_7XRN3CFX ARRIBA other 62 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +X:54248697 X:54259338 WNK3--WNK3 BS_7XRN3CFX ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_7Z93ZYMS ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_7Z93ZYMS ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:48809641 2:48809118 AC009975.1--ELOBP3(28223)/AC009975.1(222) BS_7Z93ZYMS ARRIBA other 1 0 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_7Z93ZYMS ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_7Z93ZYMS ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_7Z93ZYMS ARRIBA other 9 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_7Z93ZYMS ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_7Z93ZYMS ARRIBA other 7 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_7Z93ZYMS ARRIBA in-frame 9 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_7Z93ZYMS ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_7Z93ZYMS ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_7Z93ZYMS ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_7Z93ZYMS ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +X:124453337 X:124487229 TENM1--TENM1 BS_7Z93ZYMS ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.59Mb]],duplication/non-canonical_splicing TENM1 NA TENM1 NA NA NA NA NA NA +15:56394834 15:56389318 TEX9--TEX9 BS_7Z93ZYMS ARRIBA in-frame 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.20Mb]],duplication/non-canonical_splicing TEX9 NA TEX9 NA NA NA NA NA NA +16:9566590 16:9514699 AC007221.2--AC007221.1 BS_7ZV3DPGT ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr16:0.02Mb],LOCAL_REARRANGEMENT:+:[24481]],duplication AC007221.2 NA AC007221.1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_7ZV3DPGT ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_7ZV3DPGT ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_7ZV3DPGT ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:137917431 9:137913180 CACNA1B--CACNA1B BS_7ZV3DPGT ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.25Mb]],duplication/non-canonical_splicing CACNA1B NA CACNA1B NA NA NA NA NA NA +1:181511510 1:181483744 CACNA1E--CACNA1E BS_7ZV3DPGT ARRIBA in-frame 5 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +18:13019206 18:12971153 CEP192--SEH1L BS_7ZV3DPGT ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr18:0.00Mb],LOCAL_REARRANGEMENT:+:[3826]],duplication CEP192 NA SEH1L NA NA NA NA NA NA +3:1376964 3:1429696 CNTN6--CNTN6(25479)/RPL23AP38(166081) BS_7ZV3DPGT ARRIBA other 1 1 medium [],duplication CNTN6 NA CNTN6 RPL23AP38 Oncogene Oncogene NA NA NA +13:91448922 13:91397069 GPC5--MIR17HG(42490)/GPC5(1538) BS_7ZV3DPGT ARRIBA frameshift 17 3 high [],duplication GPC5 NA MIR17HG GPC5 TumorSuppressorGene, CosmicCensus, Oncogene NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA +6:34091883 6:34133859 GRM4--GRM4 BS_7ZV3DPGT ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_7ZV3DPGT ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +2:131613103 2:131553013 POTEKP--MED15P4(16025)/POTEKP(38739) BS_7ZV3DPGT ARRIBA other 2 0 medium [],duplication POTEKP NA MED15P4 POTEKP NA NA NA NA NA +2:131613103 2:131575035 POTEKP--MED15P4(38047)/POTEKP(16717) BS_7ZV3DPGT ARRIBA other 2 0 low [],duplication POTEKP NA MED15P4 POTEKP NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_7ZV3DPGT ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +17:2024853 17:2085901 RTN4RL1--SMG6 BS_7ZV3DPGT ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr17:0.03Mb],LOCAL_REARRANGEMENT:-:[34494]],duplication RTN4RL1 NA SMG6 NA NA Oncogene NA NA NA +8:30756887 6:80725936 UBXN8--AL590824.1(168747)/FAM46A(765503) BS_7ZV3DPGT ARRIBA frameshift 3 1 high [],translocation UBXN8 NA AL590824.1 FAM46A NA NA NA NA NA +22:34884141 22:35002862 Z82196.2(159222)/ISX-AS1(113578)--ISX-AS1 BS_7ZV3DPGT ARRIBA other 5 3 medium [],duplication Z82196.2 ISX-AS1 ISX-AS1 NA NA NA NA NA NA +14:72594327 14:72619984 AC004828.1--DPF3 BS_81SP2HX4 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA +12:3920729 12:3549936 AC005842.1(10391)/AC007207.2(100248)--PRMT8 BS_81SP2HX4 ARRIBA other 34 5 high [],inversion AC005842.1 AC007207.2 PRMT8 NA NA NA NA NA NA +12:3366059 12:3659654 AC005865.2--CRACR2A BS_81SP2HX4 ARRIBA other 11 0 medium [INTRACHROMOSOMAL[chr12:0.24Mb]],duplication AC005865.2 NA CRACR2A NA NA NA NA NA NA +12:4074656 3:17067956 AC007207.2(47998)/HSPA8P5(22795)--PLCL2 BS_81SP2HX4 ARRIBA other 5 0 medium [],translocation AC007207.2 HSPA8P5 PLCL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_81SP2HX4 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_81SP2HX4 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:43605714 3:13366091 ANO10--NUP210 BS_81SP2HX4 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr3:29.93Mb]],deletion ANO10 NA NUP210 NA NA NA NA NA NA +3:43605714 3:13360491 ANO10--NUP210 BS_81SP2HX4 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:29.93Mb]],deletion ANO10 NA NUP210 NA NA NA NA NA NA +9:137917431 9:137913180 CACNA1B--CACNA1B BS_81SP2HX4 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.25Mb]],duplication/non-canonical_splicing CACNA1B NA CACNA1B NA NA NA NA NA NA +12:2449153 12:3278421 CACNA1C--TSPAN9 BS_81SP2HX4 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr12:0.38Mb]],inversion/3'-3' CACNA1C NA TSPAN9 NA NA NA NA NA NA +3:15223561 12:3332392 CAPN7--AC005865.2 BS_81SP2HX4 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr3--chr12]],translocation CAPN7 NA AC005865.2 NA NA NA NA NA NA +12:4278919 3:40044050 CCND2--MYRIP BS_81SP2HX4 ARRIBA frameshift 2 1 low [INTERCHROMOSOMAL[chr12--chr3]],translocation CCND2 NA MYRIP NA CosmicCensus, Oncogene NA NA NA NA +12:4304501 12:576711 CCND2--NINJ2 BS_81SP2HX4 ARRIBA other 105 17 high [INTRACHROMOSOMAL[chr12:3.61Mb]],inversion CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA +12:4288990 12:566178 CCND2--NINJ2 BS_81SP2HX4 ARRIBA in-frame 51 7 medium [INTRACHROMOSOMAL[chr12:3.61Mb]],inversion CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA +12:4288990 12:566178 CCND2--NINJ2 BS_81SP2HX4 STARFUSION in-frame 51 12 NA [INTRACHROMOSOMAL[chr12:3.61Mb]] CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA +12:4300052 12:566178 CCND2--NINJ2 BS_81SP2HX4 STARFUSION other 35 12 NA [INTRACHROMOSOMAL[chr12:3.61Mb]] CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA +12:4300069 12:566178 CCND2--NINJ2 BS_81SP2HX4 STARFUSION other 8 12 NA [INTRACHROMOSOMAL[chr12:3.61Mb]] CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA +12:4300005 12:566178 CCND2--NINJ2 BS_81SP2HX4 STARFUSION frameshift 7 12 NA [INTRACHROMOSOMAL[chr12:3.61Mb]] CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA +12:4288907 12:3846016 CCND2--PARP11 BS_81SP2HX4 ARRIBA frameshift 8 1 medium [INTRACHROMOSOMAL[chr12:0.40Mb]],duplication/5'-5' CCND2 NA PARP11 NA CosmicCensus, Oncogene NA NA NA NA +12:1210708 12:3993264 ERC1--AC005842.1(82926)/AC007207.2(27713) BS_81SP2HX4 ARRIBA other 57 6 high [],inversion ERC1 NA AC005842.1 AC007207.2 CosmicCensus, Oncogene NA NA NA NA +12:1190052 12:3549936 ERC1--PRMT8 BS_81SP2HX4 ARRIBA frameshift 72 7 high [INTRACHROMOSOMAL[chr12:1.89Mb]],deletion ERC1 NA PRMT8 NA CosmicCensus, Oncogene NA NA NA NA +12:1204512 12:3549936 ERC1--PRMT8 BS_81SP2HX4 ARRIBA frameshift 5 12 high [INTRACHROMOSOMAL[chr12:1.89Mb]],deletion ERC1 NA PRMT8 NA CosmicCensus, Oncogene NA NA NA NA +2:105545949 2:164743875 FHL2(107436)/NCK2(198948)--COBLL1 BS_81SP2HX4 ARRIBA other 1 1 high [],inversion FHL2 NCK2 COBLL1 NA Oncogene NA NA NA NA +7:80135278 7:81515772 GNAI1--AC008163.1 BS_81SP2HX4 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:1.27Mb]],inversion GNAI1 NA AC008163.1 NA NA NA NA NA NA +7:80135278 7:81560265 GNAI1--AC008163.1 BS_81SP2HX4 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:1.27Mb]],inversion GNAI1 NA AC008163.1 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_81SP2HX4 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +2:226794989 12:411747 IRS1--CCDC77 BS_81SP2HX4 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr2--chr12]],translocation IRS1 NA CCDC77 NA NA NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_81SP2HX4 ARRIBA frameshift 2 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +2:242095027 2:232974964 LINC01881--NGEF BS_81SP2HX4 ARRIBA other 17 0 high [INTRACHROMOSOMAL[chr2:9.08Mb]],inversion LINC01881 NA NGEF NA NA NA NA NA NA +2:242088801 2:232974964 LINC01881--NGEF BS_81SP2HX4 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr2:9.08Mb]],inversion LINC01881 NA NGEF NA NA NA NA NA NA +2:242095027 2:232974964 LINC01881--NGEF BS_81SP2HX4 STARFUSION other 19 0 NA [INTRACHROMOSOMAL[chr2:9.08Mb]] LINC01881 NA NGEF NA NA NA NA NA NA +3:47977865 3:2819486 MAP4--CNTN4 BS_81SP2HX4 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr3:44.79Mb]],inversion MAP4 NA CNTN4 NA Oncogene Oncogene NA NA NA +3:47977865 3:34937513 MAP4--FECHP1(63659)/KRT8P18(278192) BS_81SP2HX4 ARRIBA frameshift 4 0 medium [],inversion MAP4 NA FECHP1 KRT8P18 Oncogene NA NA NA NA +2:105882049 2:107180363 NCK2--AC005040.1(216689)/LINC01789(74328) BS_81SP2HX4 ARRIBA frameshift 5 1 high [],deletion NCK2 NA AC005040.1 LINC01789 NA NA NA NA NA +2:232920284 2:165686205 NGEF--CSRNP3 BS_81SP2HX4 ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr2:67.19Mb]],inversion NGEF NA CSRNP3 NA NA TranscriptionFactor NA NA NA +2:232920284 2:165740154 NGEF--CSRNP3(50747)/GALNT3(7437) BS_81SP2HX4 ARRIBA frameshift 9 2 high [],inversion NGEF NA CSRNP3 GALNT3 NA TranscriptionFactor NA NA NA +17:45086652 17:59910562 NMT1--RPS6KB1 BS_81SP2HX4 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr17:14.78Mb]],deletion NMT1 NA RPS6KB1 NA Oncogene Kinase NA NA NA +2:225513672 2:219078206 NYAP2--AC068946.1 BS_81SP2HX4 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr2:6.23Mb]],inversion NYAP2 NA AC068946.1 NA NA NA NA NA NA +2:225513672 2:219078206 NYAP2--NHEJ1 BS_81SP2HX4 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr2:6.24Mb]],inversion NYAP2 NA NHEJ1 NA NA NA NA NA NA +7:100611114 4:157637998 PCOLCE(2939)/MOSPD3(988)--AC093817.1 BS_81SP2HX4 ARRIBA other 14 0 medium [],translocation PCOLCE MOSPD3 AC093817.1 NA NA NA NA NA NA +12:3553714 12:3997581 PRMT8--AC005842.1(87243)/AC007207.2(23396) BS_81SP2HX4 ARRIBA frameshift 3 1 medium [],inversion PRMT8 NA AC005842.1 AC007207.2 NA NA NA NA NA +12:3553714 12:4213016 PRMT8--AC007207.1(94884)/CCND2-AS1(35749) BS_81SP2HX4 ARRIBA frameshift 11 1 high [],deletion PRMT8 NA AC007207.1 CCND2-AS1 NA NA NA Oncogene NA +12:3553714 12:4053466 PRMT8--AC007207.2(26808)/HSPA8P5(43985) BS_81SP2HX4 ARRIBA frameshift 8 1 medium [],inversion PRMT8 NA AC007207.2 HSPA8P5 NA NA NA NA NA +12:3553714 12:4274001 PRMT8--CCND2 BS_81SP2HX4 ARRIBA frameshift 8 1 medium [INTRACHROMOSOMAL[chr12:0.68Mb]],deletion PRMT8 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA +12:3562678 12:4097497 PRMT8--HSPA8P5 BS_81SP2HX4 ARRIBA other 186 11 high [INTRACHROMOSOMAL[chr12:0.50Mb]],inversion/3'-3' PRMT8 NA HSPA8P5 NA NA NA NA NA NA +8:99996462 8:100080355 RGS22--RGS22 BS_81SP2HX4 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.17Mb]],duplication/non-canonical_splicing RGS22 NA RGS22 NA NA NA NA NA NA +2:226867318 2:215624235 RHBDD1--LINC00607 BS_81SP2HX4 ARRIBA frameshift 2 6 medium [INTRACHROMOSOMAL[chr2:10.99Mb]],inversion RHBDD1 NA LINC00607 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_81SP2HX4 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:18527326 3:17384015 SATB1-AS1--TBC1D5 BS_81SP2HX4 ARRIBA other 2 2 high [INTRACHROMOSOMAL[chr3:0.70Mb]],inversion SATB1-AS1 NA TBC1D5 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_81SP2HX4 ARRIBA other 14 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +2:161204793 2:146104551 TANK--AC062031.1(173405)/RNU7-2P(40605) BS_81SP2HX4 ARRIBA frameshift 27 5 high [],inversion TANK NA AC062031.1 RNU7-2P TumorSuppressorGene NA NA NA NA +3:23811510 3:46660276 UBE2E1--SNORD77(9686)/ALS2CL(8721) BS_81SP2HX4 ARRIBA frameshift 4 0 high [],inversion UBE2E1 NA SNORD77 ALS2CL NA NA NA Oncogene NA +7:112635922 7:100605123 AC002463.1--PCOLCE BS_84XCR9GG ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:12.01Mb]],duplication AC002463.1 NA PCOLCE NA NA NA NA NA NA +7:88219224 7:88181505 AC003991.2--ADAM22 BS_84XCR9GG ARRIBA other 23 3 medium [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[13771]],duplication AC003991.2 NA ADAM22 NA NA NA NA NA NA +7:88219224 7:88181505 AC003991.2--ADAM22 BS_84XCR9GG STARFUSION other 18 3 NA [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[13771]] AC003991.2 NA ADAM22 NA NA NA NA NA NA +7:132352381 7:98929989 AC011625.1--TRRAP BS_84XCR9GG ARRIBA other 57 1 high [INTRACHROMOSOMAL[chr7:33.34Mb]],duplication AC011625.1 NA TRRAP NA NA Kinase, CosmicCensus, Kinase NA NA NA +7:132366067 7:98929989 AC011625.1--TRRAP BS_84XCR9GG ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr7:33.34Mb]],duplication AC011625.1 NA TRRAP NA NA Kinase, CosmicCensus, Kinase NA NA NA +7:132352381 7:98930633 AC011625.1--TRRAP BS_84XCR9GG ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:33.34Mb]],duplication AC011625.1 NA TRRAP NA NA Kinase, CosmicCensus, Kinase NA NA NA +7:132352381 7:98929989 AC011625.1--TRRAP BS_84XCR9GG STARFUSION other 62 3 NA [INTRACHROMOSOMAL[chr7:33.34Mb]] AC011625.1 NA TRRAP NA NA Kinase, CosmicCensus, Kinase NA NA NA +7:132367866 7:98929989 AC011625.1--TRRAP BS_84XCR9GG STARFUSION other 15 3 NA [INTRACHROMOSOMAL[chr7:33.34Mb]] AC011625.1 NA TRRAP NA NA Kinase, CosmicCensus, Kinase NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_84XCR9GG ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93569438 AC110023.1--AC091078.1 BS_84XCR9GG ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_84XCR9GG ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +7:100648783 7:100219997 ACTL6B--STAG3 BS_84XCR9GG ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr7:0.42Mb]],inversion ACTL6B NA STAG3 NA NA NA NA NA NA +10:73380013 10:125204471 ANXA7--MRPS21P6(37534)/RPS27P18(269215) BS_84XCR9GG ARRIBA frameshift 6 1 medium [],duplication ANXA7 NA MRPS21P6 RPS27P18 TumorSuppressorGene NA NA NA NA +15:28995806 15:90902317 APBA2--MAN2A2 BS_84XCR9GG ARRIBA other 20 4 high [INTRACHROMOSOMAL[chr15:61.78Mb]],deletion APBA2 NA MAN2A2 NA NA NA NA NA NA +15:28995806 15:90904190 APBA2--MAN2A2 BS_84XCR9GG ARRIBA other 17 2 high [INTRACHROMOSOMAL[chr15:61.78Mb]],deletion APBA2 NA MAN2A2 NA NA NA NA NA NA +15:28995806 15:90902317 APBA2--MAN2A2 BS_84XCR9GG STARFUSION other 21 4 NA [INTRACHROMOSOMAL[chr15:61.78Mb]] APBA2 NA MAN2A2 NA NA NA NA NA NA +15:28995806 15:90904190 APBA2--MAN2A2 BS_84XCR9GG STARFUSION other 19 4 NA [INTRACHROMOSOMAL[chr15:61.78Mb]] APBA2 NA MAN2A2 NA NA NA NA NA NA +1:112449172 1:74649315 CTTNBP2NL--ERICH3 BS_84XCR9GG ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr1:37.72Mb]],inversion CTTNBP2NL NA ERICH3 NA NA NA NA NA NA +10:127410927 10:99725189 DOCK1--COX15 BS_84XCR9GG ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr10:27.17Mb]],duplication/5'-5' DOCK1 NA COX15 NA NA NA NA NA NA +10:127410927 10:99725189 DOCK1--CUTC BS_84XCR9GG ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr10:27.15Mb]],duplication DOCK1 NA CUTC NA NA NA NA NA NA +10:110502869 10:127403055 DUSP5--DOCK1 BS_84XCR9GG ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr10:16.39Mb]],deletion DUSP5 NA DOCK1 NA TumorSuppressorGene NA NA NA NA +10:110510596 10:127403055 DUSP5--DOCK1 BS_84XCR9GG ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr10:16.39Mb]],deletion DUSP5 NA DOCK1 NA TumorSuppressorGene NA NA NA NA +10:14604240 10:1486633 FAM107B--ADARB2 BS_84XCR9GG ARRIBA other 12 0 high [INTRACHROMOSOMAL[chr10:12.78Mb]],inversion/5'-5' FAM107B NA ADARB2 NA NA Oncogene NA NA NA +7:127242695 7:127243515 GRM8--GRM8 BS_84XCR9GG ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +4:142846209 4:53899920 INPP4B--AC105384.1 BS_84XCR9GG ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr4:88.11Mb]],inversion INPP4B NA AC105384.1 NA TumorSuppressorGene NA NA NA NA +4:142846209 4:53676075 INPP4B--AC124017.1 BS_84XCR9GG ARRIBA other 5 3 high [INTRACHROMOSOMAL[chr4:88.29Mb]],inversion INPP4B NA AC124017.1 NA TumorSuppressorGene NA NA NA NA +4:142846209 4:53716832 INPP4B--AC124017.1 BS_84XCR9GG ARRIBA other 3 2 medium [INTRACHROMOSOMAL[chr4:88.29Mb]],inversion INPP4B NA AC124017.1 NA TumorSuppressorGene NA NA NA NA +4:142846209 4:53733187 INPP4B--AC124017.1 BS_84XCR9GG ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr4:88.29Mb]],inversion INPP4B NA AC124017.1 NA TumorSuppressorGene NA NA NA NA +4:142846209 4:53872842 INPP4B--AC124017.1(135686)/AC105384.1(27029) BS_84XCR9GG ARRIBA other 12 0 high [],inversion INPP4B NA AC124017.1 AC105384.1 TumorSuppressorGene NA NA NA NA +4:142835805 4:53584124 INPP4B--LNX1 BS_84XCR9GG ARRIBA other 62 23 high [INTRACHROMOSOMAL[chr4:88.32Mb]],inversion/5'-5' INPP4B NA LNX1 NA TumorSuppressorGene NA NA NA NA +10:132538171 10:70324030 INPP5A--LRRC20 BS_84XCR9GG ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr10:62.16Mb]],inversion INPP5A NA LRRC20 NA NA NA NA NA NA +10:132538171 10:70301508 INPP5A--LRRC20 BS_84XCR9GG ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:62.16Mb]],inversion INPP5A NA LRRC20 NA NA NA NA NA NA +3:44840456 3:44828214 KIF15--KIF15 BS_84XCR9GG ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.11Mb]],duplication/non-canonical_splicing KIF15 NA KIF15 NA NA NA NA NA NA +10:124517271 10:103967710 LHPP--SLK BS_84XCR9GG ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:20.43Mb]],duplication LHPP NA SLK NA NA Kinase, Kinase NA NA NA +10:70344116 10:42514720 LRRC20--ZNF37BP BS_84XCR9GG ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr10:27.75Mb]],deletion LRRC20 NA ZNF37BP NA NA NA NA NA NA +1:219218712 1:219210532 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_84XCR9GG ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +10:48427096 10:97104888 MAPK8--SLIT1 BS_84XCR9GG ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr10:48.56Mb]],inversion MAPK8 NA SLIT1 NA Oncogene, Kinase NA NA NA NA +10:125203413 10:77985307 MRPS21P6(36476)/RPS27P18(270273)--POLR3A BS_84XCR9GG ARRIBA other 2 0 low [],inversion MRPS21P6 RPS27P18 POLR3A NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_84XCR9GG ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +9:110016039 9:109780488 PALM2-AKAP2--PALM2 BS_84XCR9GG ARRIBA frameshift 3 2 medium [INTRACHROMOSOMAL[chr9:0.17Mb]],duplication PALM2-AKAP2 NA PALM2 NA NA NA NA NA NA +9:109943381 9:109942686 PALM2-AKAP2--PALM2 BS_84XCR9GG ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr9:0.17Mb]],duplication PALM2-AKAP2 NA PALM2 NA NA NA NA NA NA +9:110016039 9:109942686 PALM2-AKAP2--PALM2 BS_84XCR9GG ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.17Mb]],duplication PALM2-AKAP2 NA PALM2 NA NA NA NA NA NA +9:109932028 9:109923735 PALM2-AKAP2--PALM2 BS_84XCR9GG ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.17Mb]],duplication PALM2-AKAP2 NA PALM2 NA NA NA NA NA NA +10:94031317 10:69647239 PLCE1--C10orf35(13640)/AL450311.1(37660) BS_84XCR9GG ARRIBA frameshift 11 0 medium [],inversion PLCE1 NA C10orf35 AL450311.1 TumorSuppressorGene NA NA NA NA +7:137300978 2:197500345 PTN--HSPE1 BS_84XCR9GG ARRIBA other 5 1 medium [INTERCHROMOSOMAL[chr7--chr2]],translocation PTN NA HSPE1 NA Oncogene NA NA NA NA +20:38558453 20:33925028 RALGAPB--TPM3P2(11692)/PIGPP3(40134) BS_84XCR9GG ARRIBA frameshift 8 0 high [],inversion RALGAPB NA TPM3P2 PIGPP3 NA NA NA NA NA +10:97379332 10:89844221 RRP12--LINC00865(3360)/AL138924.1(9685) BS_84XCR9GG ARRIBA frameshift 3 1 medium [],deletion RRP12 NA LINC00865 AL138924.1 NA NA NA NA NA +11:57741646 14:49862827 SELENOH--RN7SL2 BS_84XCR9GG STARFUSION other 24 1 NA [INTERCHROMOSOMAL[chr11--chr14]] SELENOH NA RN7SL2 NA NA NA NA NA NA +10:103993133 10:124484139 SLK--LHPP BS_84XCR9GG ARRIBA frameshift 12 0 high [INTRACHROMOSOMAL[chr10:20.43Mb]],deletion SLK NA LHPP NA Kinase, Kinase NA NA NA NA +10:103993133 10:124496961 SLK--LHPP BS_84XCR9GG ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr10:20.43Mb]],deletion SLK NA LHPP NA Kinase, Kinase NA NA NA NA +7:100114186 7:92939125 TAF6--AC002454.1(21938)/RN7SL7P(31877) BS_84XCR9GG ARRIBA other 13 4 medium [],inversion TAF6 NA AC002454.1 RN7SL7P NA NA NA NA NA +7:100119204 10:132679223 TAF6--INPP5A BS_84XCR9GG ARRIBA other 10 0 high [INTERCHROMOSOMAL[chr7--chr10]],translocation/5'-5' TAF6 NA INPP5A NA NA NA NA NA NA +10:119596434 10:43350233 TIAL1--RNU6ATAC11P(8323)/FXYD4(21409) BS_84XCR9GG ARRIBA frameshift 7 0 medium [],inversion TIAL1 NA RNU6ATAC11P FXYD4 NA NA NA NA NA +10:45988847 10:2098512 TIMM23--RNU6-889P(243)/AL441943.2(67820) BS_84XCR9GG ARRIBA frameshift 3 0 medium [],inversion TIMM23 NA RNU6-889P AL441943.2 NA NA NA NA NA +7:98949841 7:112574130 TRRAP--NPM1P14(52460)/AC002463.1(48248) BS_84XCR9GG ARRIBA frameshift 9 2 high [],deletion TRRAP NA NPM1P14 AC002463.1 Kinase, CosmicCensus, Kinase NA NA NA NA +10:71213064 10:85787513 UNC5B--GRID1 BS_84XCR9GG ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr10:14.30Mb]],deletion/5'-5' UNC5B NA GRID1 NA TumorSuppressorGene NA NA NA NA +1:107748968 20:31249509 VAV3--5S_rRNA(433235)/DEFB115(8155) BS_84XCR9GG ARRIBA frameshift 3 0 high [],translocation VAV3 NA 5S_rRNA DEFB115 Oncogene NA NA NA NA +1:107748968 20:31249509 VAV3--DEFB115 BS_84XCR9GG ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr1--chr20]],translocation VAV3 NA DEFB115 NA Oncogene NA NA NA NA +10:42631929 10:10751360 ZNF33B--AL583859.2(289011)/AL136452.1(24863) BS_84XCR9GG ARRIBA frameshift 1 1 high [],deletion ZNF33B NA AL583859.2 AL136452.1 TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_850BAHH9 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_850BAHH9 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_850BAHH9 STARFUSION other 18 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_850BAHH9 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_86Q14TZG ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_86Q14TZG ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:178680006 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_86Q14TZG ARRIBA other 1 2 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +14:46920012 14:47035304 MDGA2--MDGA2 BS_86Q14TZG ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +14:49862559 6:52995794 RN7SL2--7SK BS_86Q14TZG STARFUSION other 5 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_86Q14TZG ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_86Q14TZG ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +3:141386937 9:18082743 ZBTB38--ADAMTSL1 BS_893A91ZM ARRIBA other 7 0 high [INTERCHROMOSOMAL[chr3--chr9]],translocation/5'-5' ZBTB38 NA ADAMTSL1 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_8D0NYM46 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_8D0NYM46 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:111808397 4:111829050 AC139718.1--AC004704.1 BS_8D0NYM46 ARRIBA other 6 1 medium [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_REARRANGEMENT:-:[17187]],duplication AC139718.1 NA AC004704.1 NA NA NA NA NA NA +3:37416724 3:37380271 C3orf35--GOLGA4(13520)/C3orf35(5998) BS_8D0NYM46 ARRIBA other 1 0 low [],duplication C3orf35 NA GOLGA4 C3orf35 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_8D0NYM46 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +18:51110874 18:51560593 SMAD4(25829)/AC090330.1(47408)--LINC01630 BS_8D0NYM46 ARRIBA other 2 0 medium [],deletion SMAD4 AC090330.1 LINC01630 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_8F9BDWY4 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_8F9BDWY4 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:60726410 1:60733522 AC099792.1--AC099792.1 BS_8F9BDWY4 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing AC099792.1 NA AC099792.1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_8F9BDWY4 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +8:39011716 8:38877026 ADAM9--TACC1(23998)/PLEKHA2(24209) BS_8F9BDWY4 ARRIBA frameshift 2 0 high [],inversion ADAM9 NA TACC1 PLEKHA2 Oncogene Oncogene NA Oncogene NA +6:118813102 6:118856545 AL359634.1(29682)/MCM9(340)--MCM9 BS_8F9BDWY4 ARRIBA other 5 0 medium [],duplication AL359634.1 MCM9 MCM9 NA NA TumorSuppressorGene TumorSuppressorGene NA NA +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_8F9BDWY4 ARRIBA frameshift 1 0 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +9:22127402 9:22046751 CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_8F9BDWY4 ARRIBA other 2 0 medium [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_8F9BDWY4 ARRIBA in-frame 17 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +14:89870643 14:89932627 EFCAB11--EFCAB11 BS_8F9BDWY4 ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_8F9BDWY4 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +8:38413918 8:38836162 FGFR1--TACC1 BS_8F9BDWY4 ARRIBA in-frame 370 54 high [ChimerSeq,ChimerKB,Cosmic,INTRACHROMOSOMAL[chr8:0.26Mb]],inversion FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA +8:38413918 8:38836162 FGFR1--TACC1 BS_8F9BDWY4 STARFUSION in-frame 375 84 NA [ChimerSeq,ChimerKB,Cosmic,INTRACHROMOSOMAL[chr8:0.26Mb]] FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_8F9BDWY4 ARRIBA frameshift 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_8F9BDWY4 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_8F9BDWY4 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +1:149603761 1:149354096 PPIAL4C(19297)/LINC00869(2573)--AC242843.1 BS_8F9BDWY4 ARRIBA other 3 0 medium [],duplication PPIAL4C LINC00869 AC242843.1 NA NA NA NA NA NA +16:519891 16:74380 RAB11FIP3--RHBDF1 BS_8F9BDWY4 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr16:0.35Mb]],duplication/5'-5' RAB11FIP3 NA RHBDF1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_8F9BDWY4 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:141959674 3:142093127 TFDP2--TFDP2 BS_8F9BDWY4 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.21Mb]],duplication/non-canonical_splicing TFDP2 NA TFDP2 NA TranscriptionFactor TranscriptionFactor NA NA NA +4:166065863 4:165989381 TLL1--TLL1 BS_8F9BDWY4 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing TLL1 NA TLL1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_8GW1TMV2 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_8GW1TMV2 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +18:52214508 18:52752054 AC022701.1(368880)/AC016383.1(121853)--DCC BS_8GW1TMV2 ARRIBA other 4 0 high [],deletion AC022701.1 AC016383.1 DCC NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_8GW1TMV2 ARRIBA other 3 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +2:15595660 2:16776954 DDX1--AC008164.1(9399)/AC008069.1(76866) BS_8GW1TMV2 ARRIBA frameshift 3 3 medium [],deletion DDX1 NA AC008164.1 AC008069.1 Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_8GW1TMV2 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +X:49033465 X:48185476 TFE3--AC245047.7(7453)/SSX5(744) BS_8GW1TMV2 ARRIBA frameshift 3 0 medium [],inversion TFE3 NA AC245047.7 SSX5 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +10:21369967 10:21172477 AL158209.1--NEBL BS_8J09S6MZ STARFUSION other 10 2 NA [INTRACHROMOSOMAL[chr10:0.17Mb]] AL158209.1 NA NEBL NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_8J3B6ZB6 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_8J3B6ZB6 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_8J3B6ZB6 ARRIBA other 8 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_8J3B6ZB6 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +21:29642825 21:29694062 GRIK1--GRIK1 BS_8J3B6ZB6 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.40Mb]],duplication/non-canonical_splicing GRIK1 NA GRIK1 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_8J3B6ZB6 ARRIBA other 10 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +7:138844317 7:140783157 KIAA1549--BRAF BS_8J3B6ZB6 ARRIBA in-frame 22 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138844317 7:140783157 KIAA1549--BRAF BS_8J3B6ZB6 STARFUSION in-frame 22 2 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +8:89418044 8:89725641 KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_8J3B6ZB6 ARRIBA other 3 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_8J3B6ZB6 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:179589647 5:179527806 RUFY1--AC136628.3(293)/RUFY1(22752) BS_8J3B6ZB6 ARRIBA frameshift 28 2 high [],duplication RUFY1 NA AC136628.3 RUFY1 NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_8MA5B8Y9 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_8MA5B8Y9 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_8MA5B8Y9 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211107377 AL590132.1--KCNH1 BS_8MA5B8Y9 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_8MA5B8Y9 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_8MA5B8Y9 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_8MA5B8Y9 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211107377 AL590132.1--KCNH1 BS_8MA5B8Y9 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +3:2903005 3:2883145 CNTN4--CNTN4 BS_8MA5B8Y9 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA +10:125160319 10:129536241 CTBP2--MGMT BS_8MA5B8Y9 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr10:4.31Mb]],inversion CTBP2 NA MGMT NA NA CosmicCensus NA NA TCGAFusion +10:125110990 10:129536241 CTBP2--MGMT BS_8MA5B8Y9 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:4.31Mb]],inversion CTBP2 NA MGMT NA NA CosmicCensus NA NA TCGAFusion +10:125160319 10:129707895 CTBP2--MGMT BS_8MA5B8Y9 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:4.31Mb]],inversion CTBP2 NA MGMT NA NA CosmicCensus NA NA TCGAFusion +5:119203436 11:16476388 DMXL1--SOX6 BS_8MA5B8Y9 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr5--chr11]],translocation DMXL1 NA SOX6 NA NA TranscriptionFactor NA NA NA +19:2206570 19:2391279 DOT1L--TMPRSS9 BS_8MA5B8Y9 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr19:0.16Mb]],inversion/3'-3' DOT1L NA TMPRSS9 NA TranscriptionFactor NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_8MA5B8Y9 ARRIBA in-frame 31 5 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +4:46303460 4:46332682 GABRA2--GABRA2 BS_8MA5B8Y9 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing GABRA2 NA GABRA2 NA NA NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_8MA5B8Y9 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_8MA5B8Y9 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_8MA5B8Y9 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_8MA5B8Y9 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_8MA5B8Y9 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211107377 KCNH1--AL590132.1 BS_8MA5B8Y9 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_8MA5B8Y9 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211107377 KCNH1--AL590132.1 BS_8MA5B8Y9 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_8MA5B8Y9 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:67823874 2:67684077 LINC01812--AC007422.2 BS_8MA5B8Y9 STARFUSION other 15 2 NA [INTRACHROMOSOMAL[chr2:0.11Mb]] LINC01812 NA AC007422.2 NA NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_8MA5B8Y9 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +8:74612940 8:74500513 MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_8MA5B8Y9 ARRIBA other 6 1 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_8MA5B8Y9 ARRIBA other 5 5 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_8MA5B8Y9 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_8MA5B8Y9 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +12:117226683 12:117227641 NOS1--NOS1 BS_8MA5B8Y9 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing NOS1 NA NOS1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_8MA5B8Y9 ARRIBA in-frame 12 4 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--METTL12 BS_8MA5B8Y9 STARFUSION other 8 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--SNORA57 BS_8MA5B8Y9 STARFUSION other 8 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +12:112651827 12:112646223 RPH3A--RPH3A BS_8MA5B8Y9 ARRIBA other 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr12:0.33Mb]],duplication RPH3A NA RPH3A NA NA NA NA NA NA +15:84716025 15:97119168 SEC11A--RN7SKP181(276784)/AC020704.1(153009) BS_8MA5B8Y9 ARRIBA frameshift 2 0 medium [],duplication SEC11A NA RN7SKP181 AC020704.1 NA NA NA NA NA +4:103656194 4:103658403 TACR3--TACR3 BS_8MA5B8Y9 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA +15:70094532 15:94030401 TLE3--LINC01579 BS_8MA5B8Y9 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr15:23.62Mb]],duplication TLE3 NA LINC01579 NA NA NA NA NA NA +15:70094532 15:93867044 TLE3--LINC01579 BS_8MA5B8Y9 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:23.62Mb]],duplication TLE3 NA LINC01579 NA NA NA NA NA NA +15:84784895 15:95610011 ZNF592--LINC00924(102164)/AC015574.1(28335) BS_8MA5B8Y9 ARRIBA frameshift 11 0 high [],deletion ZNF592 NA LINC00924 AC015574.1 TranscriptionFactor NA NA NA NA +15:84784895 15:97484126 ZNF592--LINC02254 BS_8MA5B8Y9 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr15:12.56Mb]],deletion/5'-5' ZNF592 NA LINC02254 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_8NY9J9NQ ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_8NY9J9NQ ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:20343075 14:49586587 AL355075.4--AL139099.5 BS_8NY9J9NQ STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA AL139099.5 NA NA NA NA NA NA +14:20343075 14:49586589 AL355075.4--RN7SL1 BS_8NY9J9NQ STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA RN7SL1 NA NA NA NA NA NA +11:104905947 11:104873256 AP002004.1--AP002004.2 BS_8NY9J9NQ ARRIBA other 17 1 medium [INTRACHROMOSOMAL[chr11:0.03Mb],LOCAL_INVERSION:-:+:[28132]],duplication/3'-3' AP002004.1 NA AP002004.2 NA NA NA NA NA NA +12:559421 12:566178 B4GALNT3--NINJ2 BS_8NY9J9NQ ARRIBA frameshift 4 0 high [CCLE,INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[787]],inversion B4GALNT3 NA NINJ2 NA NA NA NA NA NA +12:2688779 7:129574482 CACNA1C--SMKR1(61550)/AC078846.1(30066) BS_8NY9J9NQ ARRIBA frameshift 39 7 high [],translocation CACNA1C NA SMKR1 AC078846.1 NA NA NA NA NA +7:55181478 7:48880028 EGFR--AC004899.1(27130)/GDI2P1(22528) BS_8NY9J9NQ ARRIBA frameshift 244 64 high [],inversion EGFR NA AC004899.1 GDI2P1 Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +2:72559453 2:127569789 EXOC6B--MYO7B BS_8NY9J9NQ ARRIBA frameshift 5 3 high [INTRACHROMOSOMAL[chr2:54.71Mb]],inversion EXOC6B NA MYO7B NA NA NA NA NA NA +2:72575492 2:127573920 EXOC6B--MYO7B BS_8NY9J9NQ ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr2:54.71Mb]],inversion EXOC6B NA MYO7B NA NA NA NA NA NA +6:64590223 6:64593309 EYS--EYS BS_8NY9J9NQ ARRIBA frameshift 83 7 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +16:76635623 16:76535545 LINC02125--CNTNAP4 BS_8NY9J9NQ ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr16:0.08Mb],LOCAL_REARRANGEMENT:+:[75760]],duplication LINC02125 NA CNTNAP4 NA NA NA NA NA NA +16:76635623 16:76521140 LINC02125--CNTNAP4 BS_8NY9J9NQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr16:0.08Mb],LOCAL_REARRANGEMENT:+:[75760]],duplication LINC02125 NA CNTNAP4 NA NA NA NA NA NA +16:76655664 16:76553283 LINC02125--CNTNAP4 BS_8NY9J9NQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr16:0.08Mb],LOCAL_REARRANGEMENT:+:[75760]],duplication LINC02125 NA CNTNAP4 NA NA NA NA NA NA +16:76635623 16:76553283 LINC02125--CNTNAP4 BS_8NY9J9NQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr16:0.08Mb],LOCAL_REARRANGEMENT:+:[75760]],duplication LINC02125 NA CNTNAP4 NA NA NA NA NA NA +11:104421369 11:104873256 MIR7641-1(168718)/LINC02552(24499)--AP002004.2 BS_8NY9J9NQ ARRIBA other 3 1 medium [],deletion MIR7641-1 LINC02552 AP002004.2 NA NA NA NA NA NA +22:29604112 12:121894739 NF2--AC069503.2 BS_8NY9J9NQ ARRIBA in-frame 11 0 high [INTERCHROMOSOMAL[chr22--chr12]],translocation NF2 NA AC069503.2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:29604112 12:121903006 NF2--AC069503.2 BS_8NY9J9NQ ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr22--chr12]],translocation NF2 NA AC069503.2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:29604112 12:121894739 NF2--AC069503.2 BS_8NY9J9NQ STARFUSION in-frame 14 0 NA [INTERCHROMOSOMAL[chr22--chr12]] NF2 NA AC069503.2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:29604112 12:121888451 NF2--AC069503.3(14114)/PSMD9(280) BS_8NY9J9NQ ARRIBA frameshift 1 0 low [],translocation NF2 NA AC069503.3 PSMD9 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:29604112 12:121894739 NF2--PSMD9 BS_8NY9J9NQ ARRIBA in-frame 14 0 high [INTERCHROMOSOMAL[chr22--chr12]],translocation NF2 NA PSMD9 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:29604112 12:121903006 NF2--PSMD9 BS_8NY9J9NQ ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr22--chr12]],translocation NF2 NA PSMD9 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:29604112 12:121894739 NF2--PSMD9 BS_8NY9J9NQ STARFUSION in-frame 14 0 NA [INTERCHROMOSOMAL[chr22--chr12]] NF2 NA PSMD9 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +1:61856239 10:70598888 PATJ--PRF1 BS_8NY9J9NQ ARRIBA in-frame 3 0 high [INTERCHROMOSOMAL[chr1--chr10]],translocation/5'-5' PATJ NA PRF1 NA Oncogene CosmicCensus, Oncogene NA NA NA +10:94032252 10:94017339 PLCE1--PIPSL(55799)/PLCE1(13473) BS_8NY9J9NQ ARRIBA frameshift 1 1 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +7:103312131 7:147903565 PMPCB--CNTNAP2 BS_8NY9J9NQ ARRIBA in-frame 27 7 high [INTRACHROMOSOMAL[chr7:42.79Mb]],deletion PMPCB NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA +7:103312131 7:147903565 PMPCB--CNTNAP2 BS_8NY9J9NQ STARFUSION in-frame 34 9 NA [INTRACHROMOSOMAL[chr7:42.79Mb]] PMPCB NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_8NY9J9NQ ARRIBA frameshift 3 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_8NY9J9NQ ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19759323 13:19835689 PSPC1--ZMYM5 BS_8NY9J9NQ ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +9:35657770 14:20343402 RMRP--AL355075.4 BS_8NY9J9NQ STARFUSION other 4 9 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL355075.4 NA Oncogene NA NA NA NA +9:35657758 14:20343377 RMRP--AL355075.4 BS_8NY9J9NQ STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL355075.4 NA Oncogene NA NA NA NA +14:20343075 14:49586589 RPPH1--AL139099.5 BS_8NY9J9NQ STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA AL139099.5 NA NA NA NA NA NA +14:20343075 14:49586587 RPPH1--RN7SL1 BS_8NY9J9NQ STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_8NY9J9NQ ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:63741304 19:24018217 RTN3--RNA5-8SP4(13710)/ZNF254(15188) BS_8NY9J9NQ ARRIBA frameshift 1 4 medium [],translocation RTN3 NA RNA5-8SP4 ZNF254 NA NA NA TranscriptionFactor NA +10:70816880 10:440996 SGPL1--DIP2C BS_8NY9J9NQ ARRIBA frameshift 14 3 high [INTRACHROMOSOMAL[chr10:70.13Mb]],inversion SGPL1 NA DIP2C NA NA Oncogene NA NA NA +10:70816126 10:440996 SGPL1--DIP2C BS_8NY9J9NQ ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr10:70.13Mb]],inversion SGPL1 NA DIP2C NA NA Oncogene NA NA NA +10:70816880 10:423033 SGPL1--DIP2C BS_8NY9J9NQ ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr10:70.13Mb]],inversion SGPL1 NA DIP2C NA NA Oncogene NA NA NA +10:70816880 10:440996 SGPL1--DIP2C BS_8NY9J9NQ STARFUSION frameshift 15 2 NA [INTRACHROMOSOMAL[chr10:70.13Mb]] SGPL1 NA DIP2C NA NA Oncogene NA NA NA +12:51172301 12:50843842 TFCP2--TMPRSS12 BS_8NY9J9NQ ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr12:0.21Mb]],inversion TFCP2 NA TMPRSS12 NA TranscriptionFactor NA NA NA NA +12:51172301 12:50858785 TFCP2--TMPRSS12 BS_8NY9J9NQ ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:0.21Mb]],inversion TFCP2 NA TMPRSS12 NA TranscriptionFactor NA NA NA NA +10:38054511 1:48128573 ZNF33A--SKINT1L BS_8NY9J9NQ ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr10--chr1]],translocation ZNF33A NA SKINT1L NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_8PNA0V6R ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_8PNA0V6R ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:5978514 19:12954526 AC011444.1--GADD45GIP1 BS_8PNA0V6R ARRIBA other 17 1 high [INTRACHROMOSOMAL[chr19:6.93Mb]],inversion AC011444.1 NA GADD45GIP1 NA NA TumorSuppressorGene, Oncogene NA NA NA +19:5978514 19:12954526 AC011444.1--GADD45GIP1 BS_8PNA0V6R STARFUSION other 17 1 NA [INTRACHROMOSOMAL[chr19:6.93Mb]] AC011444.1 NA GADD45GIP1 NA NA TumorSuppressorGene, Oncogene NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_8PNA0V6R ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +14:36215058 14:36164120 AL162511.1--LINC00609 BS_8PNA0V6R ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +5:140194652 5:140164650 CYSTM1--AC011379.2 BS_8PNA0V6R ARRIBA frameshift 1 2 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:+:[1591]],duplication CYSTM1 NA AC011379.2 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_8PNA0V6R ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_8PNA0V6R ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +10:87288442 X:121048130 NUTM2A-AS1--GLUD2 BS_8PNA0V6R ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr10--chrX]],translocation NUTM2A-AS1 NA GLUD2 NA NA NA NA NA NA +3:52615351 3:52651810 PBRM1--PBRM1 BS_8PNA0V6R ARRIBA frameshift 10 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.14Mb]],duplication/non-canonical_splicing PBRM1 NA PBRM1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +6:165379194 6:165388453 PDE10A--PDE10A BS_8PNA0V6R ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_8PNA0V6R ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +4:16075687 4:16154437 PROM1--PROM1(70059)/TAPT1(6068) BS_8PNA0V6R ARRIBA frameshift 2 0 medium [],duplication PROM1 NA PROM1 TAPT1 NA NA NA NA NA +7:157571440 7:157595315 PTPRN2--PTPRN2 BS_8PNA0V6R ARRIBA frameshift 29 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:1.05Mb]],duplication/non-canonical_splicing PTPRN2 NA PTPRN2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_8PNA0V6R ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:167602127 3:167664448 WDR49--WDR49(10465)/PDCD10(18850) BS_8PNA0V6R ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +X:54248697 X:54259338 WNK3--WNK3 BS_8PNA0V6R ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA +19:9562825 19:628290 ZNF121--POLRMT BS_8PNA0V6R ARRIBA frameshift 17 0 medium [INTRACHROMOSOMAL[chr19:8.93Mb]],inversion/5'-5' ZNF121 NA POLRMT NA TranscriptionFactor NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_8Q77HZ4R ARRIBA other 4 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +3:167140689 3:167282495 AC092965.1(74369)/ZBBX(99598)--ZBBX BS_8Q77HZ4R ARRIBA other 5 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +4:119532958 1:92380809 AC093752.1--RPAP2 BS_8Q77HZ4R ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr4--chr1]],translocation AC093752.1 NA RPAP2 NA NA NA NA NA NA +4:16426440 4:16238771 AC097515.1--TAPT1-AS1 BS_8Q77HZ4R ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_8Q77HZ4R ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +11:103893875 11:104000255 AP002989.1--PDGFD BS_8Q77HZ4R ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11915]],duplication AP002989.1 NA PDGFD NA NA NA NA NA NA +2:61158012 2:61108317 C2orf74--KIAA1841 BS_8Q77HZ4R ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[7034]],duplication C2orf74 NA KIAA1841 NA NA NA NA NA NA +2:61145196 2:61108317 C2orf74--KIAA1841 BS_8Q77HZ4R ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[7034]],duplication C2orf74 NA KIAA1841 NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_8Q77HZ4R ARRIBA frameshift 8 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96920125 12:96764151 NEDD1--CFAP54 BS_8Q77HZ4R ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96920125 12:96860819 NEDD1--CFAP54 BS_8Q77HZ4R ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +1:3176697 2:213607423 PRDM16--SPAG16 BS_8Q77HZ4R ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr1--chr2]],translocation PRDM16 NA SPAG16 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +14:49862562 6:52995634 RN7SL2--7SK BS_8Q77HZ4R STARFUSION other 7 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862575 6:52995705 RN7SL2--7SK BS_8Q77HZ4R STARFUSION other 5 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862570 6:52995793 RN7SL2--7SK BS_8Q77HZ4R STARFUSION other 5 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862564 6:52995787 RN7SL2--7SK BS_8Q77HZ4R STARFUSION other 4 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862576 6:52995643 RN7SL2--7SK BS_8Q77HZ4R STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862568 6:52995635 RN7SL2--7SK BS_8Q77HZ4R STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862670 6:52995628 RN7SL2--7SK BS_8Q77HZ4R STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862574 14:20343380 RN7SL2--AL355075.4 BS_8Q77HZ4R STARFUSION other 4 7 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862574 14:20343380 RN7SL2--RPPH1 BS_8Q77HZ4R STARFUSION other 4 7 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +15:60601057 15:60528580 RORA-AS1--RORA-AS1 BS_8Q77HZ4R ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.15Mb]],duplication/non-canonical_splicing RORA-AS1 NA RORA-AS1 NA NA NA NA NA NA +1:173573182 1:173598032 SLC9C2--SLC9C2 BS_8Q77HZ4R ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.10Mb]],duplication/non-canonical_splicing SLC9C2 NA SLC9C2 NA NA NA NA NA NA +4:16355785 4:16238771 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_8Q77HZ4R ARRIBA other 2 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +9:70681506 9:70784279 TRPM3--TRPM3 BS_8Q77HZ4R ARRIBA in-frame 22 2 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_8RCR7Y4B ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_8RCR7Y4B ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_8RCR7Y4B ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +12:101048401 12:101020034 ANO4--ANO4 BS_8RCR7Y4B ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing ANO4 NA ANO4 NA NA NA NA NA NA +5:61755944 5:61703866 C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_8RCR7Y4B ARRIBA other 2 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_8RCR7Y4B ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_8RCR7Y4B ARRIBA other 8 0 low [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_8RCR7Y4B ARRIBA other 5 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +8:74612940 8:74500513 MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_8RCR7Y4B ARRIBA other 2 0 medium [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_8RCR7Y4B ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +18:42033957 18:41993270 PIK3C3--PIK3C3 BS_8RCR7Y4B ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.13Mb]],duplication/non-canonical_splicing PIK3C3 NA PIK3C3 NA Kinase Kinase NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_8RCR7Y4B ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_8RCR7Y4B ARRIBA other 2 1 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_8RCR7Y4B ARRIBA other 3 3 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +7:93306004 7:93259550 VPS50--VPS50 BS_8RCR7Y4B ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.13Mb]],duplication/non-canonical_splicing VPS50 NA VPS50 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_8RHPJ740 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_8RHPJ740 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167252211 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_8RHPJ740 ARRIBA other 4 0 low [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +4:16426440 4:16238771 AC097515.1--TAPT1-AS1 BS_8RHPJ740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16320065 AC097515.1--TAPT1-AS1 BS_8RHPJ740 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_8RHPJ740 ARRIBA in-frame 25 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +X:36205110 X:36179345 CFAP47--CFAP47 BS_8RHPJ740 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +8:112636817 8:112656341 CSMD3--CSMD3 BS_8RHPJ740 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +15:36804578 15:36868839 CSNK1A1P1--U3(15980)/AC018563.1(7540) BS_8RHPJ740 ARRIBA other 2 1 high [],duplication CSNK1A1P1 NA U3 AC018563.1 NA NA NA NA NA +12:123859268 12:123853206 DNAH10--DNAH10 BS_8RHPJ740 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA +6:138889031 6:138842979 ECT2L--ECT2L BS_8RHPJ740 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_8RHPJ740 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +1:15369502 1:15367463 FHAD1--FHAD1 BS_8RHPJ740 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA +21:29642825 21:29694062 GRIK1--GRIK1 BS_8RHPJ740 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.40Mb]],duplication/non-canonical_splicing GRIK1 NA GRIK1 NA NA NA NA NA NA +X:70387297 X:70341799 KIF4A--KIF4A BS_8RHPJ740 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.13Mb]],duplication/non-canonical_splicing KIF4A NA KIF4A NA NA NA NA NA NA +10:26193311 10:26173663 MYO3A--MYO3A BS_8RHPJ740 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.28Mb]],duplication/non-canonical_splicing MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_8RHPJ740 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +15:88011211 15:88033045 NTRK3--NTRK3 BS_8RHPJ740 ARRIBA other 3 1 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.40Mb]],duplication NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +7:157595238 7:157682937 PTPRN2--PTPRN2 BS_8RHPJ740 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:1.05Mb]],duplication/non-canonical_splicing PTPRN2 NA PTPRN2 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_8RHPJ740 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_8RHPJ740 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_8RHPJ740 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_8RHPJ740 ARRIBA other 4 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_8RHPJ740 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +6:52995902 14:20343401 7SK--AL355075.4 BS_8S86CM61 STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL355075.4 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_8S86CM61 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_8S86CM61 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_8S86CM61 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_8S86CM61 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +6:65490594 6:65495993 EYS--EYS BS_8S86CM61 ARRIBA frameshift 16 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +7:127242695 7:127243515 GRM8--GRM8 BS_8S86CM61 ARRIBA frameshift 18 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +13:75623320 13:75594915 LMO7--UCHL3 BS_8S86CM61 ARRIBA frameshift 1 1 low [Klijn_CellLines,FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr13:0.01Mb],LOCAL_REARRANGEMENT:+:[14414]],duplication LMO7 NA UCHL3 NA Oncogene NA NA NA TCGAFusion +8:99996462 8:100080355 RGS22--RGS22 BS_8S86CM61 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.17Mb]],duplication/non-canonical_splicing RGS22 NA RGS22 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_8S86CM61 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_8S86CM61 ARRIBA frameshift 33 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:216321883 1:216327654 USH2A--USH2A BS_8S86CM61 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_8SKZ7BRN ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_8SKZ7BRN ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:16625775 1:32490501 CROCCP2--ZBTB8B BS_8SKZ7BRN ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr1:15.81Mb]],duplication/5'-5' CROCCP2 NA ZBTB8B NA NA TranscriptionFactor NA NA NA +2:86232625 17:65153422 REEP1--RGS9 BS_8SKZ7BRN ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr2--chr17]],translocation REEP1 NA RGS9 NA NA NA NA NA NA +17:65137597 2:86217110 RGS9--REEP1 BS_8SKZ7BRN ARRIBA frameshift 7 1 high [INTERCHROMOSOMAL[chr17--chr2]],translocation RGS9 NA REEP1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_8SKZ7BRN ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_8SKZ7BRN ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +12:6670760 12:7290181 ZNF384--AC018653.2(49195)/ACSM4(14103) BS_8SKZ7BRN ARRIBA frameshift 17 2 high [],inversion ZNF384 NA AC018653.2 ACSM4 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +21:15014344 21:15043574 AF127577.4--NRIP1 BS_8T7DZV2F ARRIBA other 4 0 low [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA +21:14825522 21:15043573 AF127577.4--NRIP1 BS_8T7DZV2F ARRIBA other 1 0 low [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_8T7DZV2F ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +10:62268551 10:62354647 RTKN2--RN7SL591P(4350)/ZNF365(19545) BS_8T7DZV2F ARRIBA frameshift 6 0 medium [],duplication RTKN2 NA RN7SL591P ZNF365 NA NA NA TranscriptionFactor NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_8VAZSJEN ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_8VAZSJEN ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_8VAZSJEN STARFUSION other 19 17 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_8VAZSJEN ARRIBA frameshift 2 1 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_8VAZSJEN ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +7:138844317 7:140783157 KIAA1549--BRAF BS_8VAZSJEN ARRIBA in-frame 14 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138844317 7:140783157 KIAA1549--BRAF BS_8VAZSJEN STARFUSION in-frame 14 0 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_8VAZSJEN ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_8Z3SCKB5 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_8Z3SCKB5 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_8Z3SCKB5 ARRIBA other 5 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +8:86939754 8:86764793 CNBD1--AC090572.3 BS_8Z3SCKB5 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr8:0.10Mb]],duplication CNBD1 NA AC090572.3 NA CosmicCensus NA NA NA NA +21:40692810 21:40708771 DSCAM--DSCAM BS_8Z3SCKB5 ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA +X:120441730 5:102974116 LAMP2--PAM BS_8Z3SCKB5 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chrX--chr5]],translocation LAMP2 NA PAM NA NA NA NA NA NA +10:87288442 10:50667098 NUTM2A-AS1--BEND3P1(6626)/NUTM2HP(9645) BS_8Z3SCKB5 ARRIBA other 2 0 medium [],deletion NUTM2A-AS1 NA BEND3P1 NUTM2HP NA NA NA NA NA +9:35657837 14:49586591 RMRP--AL139099.5 BS_8Z3SCKB5 STARFUSION other 23 18 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL139099.5 NA Oncogene NA NA NA NA +9:35657837 14:49586591 RMRP--RN7SL1 BS_8Z3SCKB5 STARFUSION other 23 18 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL1 NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_8Z3SCKB5 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_8ZD6J47V STARFUSION other 29 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +1:180397516 1:108849576 ACBD6--AL449266.1 BS_8ZD6J47V ARRIBA in-frame 1 0 low [],deletion ACBD6 NA AL449266.1 NA NA NA NA NA NA +1:180357586 1:108896864 ACBD6--GPSM2 BS_8ZD6J47V ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:71.34Mb]],duplication/3'-3' ACBD6 NA GPSM2 NA NA NA NA NA NA +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_8ZD6J47V ARRIBA frameshift 1 1 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +9:116618324 9:98784876 ASTN2--ANKS6 BS_8ZD6J47V ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:17.63Mb]],deletion ASTN2 NA ANKS6 NA Oncogene NA NA NA NA +18:23144845 18:23834015 CABLES1--LAMA3 BS_8ZD6J47V ARRIBA frameshift 10 0 medium [INTRACHROMOSOMAL[chr18:0.43Mb]],inversion/3'-3' CABLES1 NA LAMA3 NA TumorSuppressorGene NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_8ZD6J47V ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_8ZD6J47V ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:172081 15:27326809 CBWD1--GABRG3 BS_8ZD6J47V ARRIBA frameshift 9 0 high [INTERCHROMOSOMAL[chr9--chr15]],translocation CBWD1 NA GABRG3 NA NA NA NA NA NA +3:113395750 3:113506605 CFAP44--SPICE1 BS_8ZD6J47V ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA +3:113441453 3:113506605 CFAP44--SPICE1 BS_8ZD6J47V ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA +1:23743578 1:24180854 ELOA--IFNLR1 BS_8ZD6J47V ARRIBA frameshift 10 0 high [INTRACHROMOSOMAL[chr1:0.39Mb]],inversion ELOA NA IFNLR1 NA NA NA NA NA NA +1:23743578 1:24169601 ELOA--IFNLR1 BS_8ZD6J47V ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.39Mb]],inversion ELOA NA IFNLR1 NA NA NA NA NA NA +3:134615438 3:134495296 EPHB1--CEP63 BS_8ZD6J47V ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr3:0.02Mb],LOCAL_REARRANGEMENT:+:[22784]],duplication EPHB1 NA CEP63 NA Kinase, Kinase NA NA NA NA +3:134615438 3:134488019 EPHB1--CEP63 BS_8ZD6J47V ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:0.02Mb],LOCAL_REARRANGEMENT:+:[22784]],duplication EPHB1 NA CEP63 NA Kinase, Kinase NA NA NA NA +5:56010802 12:51189748 FLJ31104(7153)/AC008892.1(48248)--POU6F1 BS_8ZD6J47V ARRIBA other 3 1 medium [],translocation FLJ31104 AC008892.1 POU6F1 NA NA TranscriptionFactor NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_8ZD6J47V ARRIBA other 5 0 medium [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +1:108904254 1:180422391 GPSM2--ACBD6 BS_8ZD6J47V ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:71.34Mb]],deletion/5'-5' GPSM2 NA ACBD6 NA NA NA NA NA NA +4:82429248 11:62664972 HNRNPDL--AP001458.2 BS_8ZD6J47V ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr4--chr11]],translocation HNRNPDL NA AP001458.2 NA NA NA NA NA NA +4:82429248 11:62664972 HNRNPDL--C11orf98 BS_8ZD6J47V ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr4--chr11]],translocation HNRNPDL NA C11orf98 NA NA NA NA NA NA +4:82429248 11:62664972 HNRNPDL--LBHD1 BS_8ZD6J47V ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr4--chr11]],translocation HNRNPDL NA LBHD1 NA NA NA NA NA NA +1:145904052 1:145912566 ITGA10--PEX11B BS_8ZD6J47V ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:-:[1161]],duplication ITGA10 NA PEX11B NA NA NA NA NA TCGAFusion +1:145906733 1:145912566 ITGA10--PEX11B BS_8ZD6J47V ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:-:[1161]],duplication ITGA10 NA PEX11B NA NA NA NA NA TCGAFusion +1:145907354 1:145912566 ITGA10--PEX11B BS_8ZD6J47V ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:-:[1161]],duplication ITGA10 NA PEX11B NA NA NA NA NA TCGAFusion +17:46066537 17:46172232 KANSL1--KANSL1 BS_8ZD6J47V ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing KANSL1 NA KANSL1 NA NA NA NA NA NA +5:80679093 5:80656411 MSH3--MSH3 BS_8ZD6J47V ARRIBA frameshift 11 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.22Mb]],duplication/non-canonical_splicing MSH3 NA MSH3 NA Oncogene Oncogene NA NA NA +3:123638071 3:123667187 MYLK--MYLK BS_8ZD6J47V ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr3:0.27Mb]],duplication/non-canonical_splicing MYLK NA MYLK NA Kinase Kinase NA NA NA +12:51189751 5:56011294 POU6F1--FLJ31104(7645)/AC008892.1(47756) BS_8ZD6J47V ARRIBA other 7 1 medium [],translocation POU6F1 NA FLJ31104 AC008892.1 TranscriptionFactor NA NA NA NA +5:116449817 5:116087497 SEMA6A-AS1--COMMD10 BS_8ZD6J47V ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr5:0.03Mb],LOCAL_REARRANGEMENT:+:[34785]],duplication SEMA6A-AS1 NA COMMD10 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_8ZD6J47V ARRIBA other 16 2 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +2:74080591 2:73985980 TET3--AC073046.1 BS_8ZD6J47V ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[61]],duplication TET3 NA AC073046.1 NA TranscriptionFactor NA NA NA NA +2:74090047 2:73985980 TET3--AC073046.1 BS_8ZD6J47V ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[61]],duplication TET3 NA AC073046.1 NA TranscriptionFactor NA NA NA NA +2:74073639 2:73985980 TET3--AC073046.1 BS_8ZD6J47V ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[61]],duplication TET3 NA AC073046.1 NA TranscriptionFactor NA NA NA NA +5:83258677 5:83104910 XRCC4--XRCC4 BS_8ZD6J47V ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.28Mb]],duplication/non-canonical_splicing XRCC4 NA XRCC4 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_8ZP3CBQA ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_8ZP3CBQA ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_8ZP3CBQA STARFUSION other 38 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +15:93592733 15:93557472 AC110023.1--AC091078.1 BS_8ZP3CBQA ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_8ZP3CBQA ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_8ZP3CBQA ARRIBA other 17 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_8ZP3CBQA ARRIBA in-frame 14 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +10:79671133 10:87449476 AL132656.2--MINPP1 BS_8ZP3CBQA ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:7.83Mb]],deletion AL132656.2 NA MINPP1 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_8ZP3CBQA ARRIBA other 9 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +18:61507560 18:61500383 CDH20--CDH20 BS_8ZP3CBQA ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.22Mb]],duplication/non-canonical_splicing CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA +12:123903113 12:123893233 DNAH10--DNAH10 BS_8ZP3CBQA ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA +6:138889031 6:138842979 ECT2L--ECT2L BS_8ZP3CBQA ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA +1:15369502 1:15367463 FHAD1--FHAD1 BS_8ZP3CBQA ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA +22:25112462 6:60488856 KIAA1671--AC244258.1 BS_8ZP3CBQA ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr22--chr6]],translocation/5'-5' KIAA1671 NA AC244258.1 NA NA NA NA NA NA +1:173787962 1:173756976 KLHL20(1260)/RN7SKP160(3586)--KLHL20 BS_8ZP3CBQA ARRIBA other 3 0 medium [],duplication KLHL20 RN7SKP160 KLHL20 NA NA NA NA NA NA +12:25503738 12:25549546 LMNTD1--LMNTD1 BS_8ZP3CBQA ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +10:88132553 10:88602576 MED6P1(82730)/AL353149.1(126576)--LIPJ BS_8ZP3CBQA ARRIBA other 7 0 high [],deletion MED6P1 AL353149.1 LIPJ NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_8ZP3CBQA ARRIBA other 17 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_8ZP3CBQA ARRIBA frameshift 25 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +10:88631228 10:88602576 RPL7P34(12294)/LIPF(33213)--LIPJ BS_8ZP3CBQA ARRIBA other 3 1 high [],duplication RPL7P34 LIPF LIPJ NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_8ZP3CBQA ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +17:35409465 17:35411927 AC060766.7--SLFN12 BS_8ZS9F31R ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr17:0.00Mb],LOCAL_REARRANGEMENT:-:[1292]],duplication AC060766.7 NA SLFN12 NA NA NA NA NA NA +11:116067120 3:185931852 AP000797.1(115629)/LINC02151(429779)--TRA2B BS_8ZS9F31R ARRIBA other 2 0 low [],translocation AP000797.1 LINC02151 TRA2B NA NA NA NA NA NA +1:28246576 1:28605460 ATPIF1--TAF12 BS_8ZS9F31R ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr1:0.34Mb]],duplication/3'-3' ATPIF1 NA TAF12 NA NA NA NA NA NA +22:49559525 22:49567820 C22orf34--C22orf34 BS_8ZS9F31R ARRIBA other 3 1 high [SELFIE,INTRACHROMOSOMAL[chr22:0.24Mb]],inversion/5'-5' C22orf34 NA C22orf34 NA NA NA NA NA NA +19:12928342 19:45370635 FARSA--ERCC2 BS_8ZS9F31R ARRIBA in-frame 5 1 high [INTRACHROMOSOMAL[chr19:32.42Mb]],duplication FARSA NA ERCC2 NA NA CosmicCensus, Oncogene NA NA NA +19:12928342 19:45370635 FARSA--ERCC2 BS_8ZS9F31R STARFUSION other 5 1 NA [INTRACHROMOSOMAL[chr19:32.42Mb]] FARSA NA ERCC2 NA NA CosmicCensus, Oncogene NA NA NA +14:89180701 14:89932627 FOXN3--EFCAB11 BS_8ZS9F31R ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr14:0.18Mb]],duplication FOXN3 NA EFCAB11 NA TranscriptionFactor NA NA NA NA +14:89486569 14:89932627 FOXN3--EFCAB11 BS_8ZS9F31R ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr14:0.18Mb]],duplication FOXN3 NA EFCAB11 NA TranscriptionFactor NA NA NA NA +11:22755953 8:52686967 GAS2--RB1CC1 BS_8ZS9F31R ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr11--chr8]],translocation GAS2 NA RB1CC1 NA NA TumorSuppressorGene, Oncogene NA NA NA +11:22755953 8:52830998 GAS2--RB1CC1(85155)/NPBWR1(107433) BS_8ZS9F31R ARRIBA frameshift 3 0 medium [],translocation GAS2 NA RB1CC1 NPBWR1 NA TumorSuppressorGene, Oncogene NA NA NA +15:41321066 5:40777586 OIP5--PRKAA1 BS_8ZS9F31R ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr15--chr5]],translocation/3'-3' OIP5 NA PRKAA1 NA NA TumorSuppressorGene, Kinase NA NA NA +5:40798063 15:41332156 PRKAA1--OIP5 BS_8ZS9F31R ARRIBA frameshift 8 2 high [INTERCHROMOSOMAL[chr5--chr15]],translocation/5'-5' PRKAA1 NA OIP5 NA TumorSuppressorGene, Kinase NA NA NA NA +18:55403454 6:167359412 TCF4--TCP10 BS_8ZS9F31R ARRIBA in-frame 5 0 medium [INTERCHROMOSOMAL[chr18--chr6]],translocation TCF4 NA TCP10 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA +3:185937825 11:116067205 TRA2B--AP000797.1(115714)/LINC02151(429694) BS_8ZS9F31R ARRIBA frameshift 8 0 high [],translocation TRA2B NA AP000797.1 LINC02151 NA NA NA NA NA +3:185937825 11:115789344 TRA2B--AP002991.1 BS_8ZS9F31R ARRIBA frameshift 14 2 high [INTERCHROMOSOMAL[chr3--chr11]],translocation/5'-5' TRA2B NA AP002991.1 NA NA NA NA NA NA +3:185937825 11:115884363 TRA2B--AP002991.1(41217)/AP000797.3(48411) BS_8ZS9F31R ARRIBA frameshift 2 0 medium [],translocation TRA2B NA AP002991.1 AP000797.3 NA NA NA NA NA +3:196391813 2:10074030 UBXN7--CYS1 BS_8ZS9F31R ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr3--chr2]],translocation/5'-5' UBXN7 NA CYS1 NA NA NA NA NA NA +16:23148638 16:23186567 USP31--SCNN1G BS_8ZS9F31R ARRIBA frameshift 31 5 high [INTRACHROMOSOMAL[chr16:0.03Mb],LOCAL_INVERSION:-:+:[33445]],duplication/5'-5' USP31 NA SCNN1G NA NA NA NA NA NA +19:57780108 1:76679414 ZNF586--AC104458.1(42075)/TPI1P1(20375) BS_8ZS9F31R ARRIBA other 7 4 medium [],translocation ZNF586 NA AC104458.1 TPI1P1 TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_90B22NGP ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_90B22NGP ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_90B22NGP ARRIBA other 23 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +9:38462233 9:38456118 AL390726.6--AL390726.6 BS_90B22NGP ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing AL390726.6 NA AL390726.6 NA NA NA NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_90B22NGP ARRIBA in-frame 38 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_90B22NGP ARRIBA frameshift 28 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_90B22NGP ARRIBA other 27 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_90B22NGP ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_90B22NGP ARRIBA in-frame 25 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_90B22NGP ARRIBA frameshift 24 1 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_90B22NGP ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +18:42454989 18:42453932 LINC00907--LINC00907 BS_90B22NGP ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.53Mb]],duplication/non-canonical_splicing LINC00907 NA LINC00907 NA NA NA NA NA NA +7:79453020 7:79516962 MAGI2--MAGI2-AS3(45754)/NUP35P2(26949) BS_90B22NGP ARRIBA frameshift 3 0 medium [],duplication MAGI2 NA MAGI2-AS3 NUP35P2 NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_90B22NGP ARRIBA frameshift 15 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_90B22NGP ARRIBA other 7 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +8:124555742 8:124558832 MTSS1--MTSS1 BS_90B22NGP ARRIBA frameshift 20 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +4:139349581 4:139342826 NAA15--NAA15 BS_90B22NGP ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing NAA15 NA NAA15 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_90B22NGP ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_90B22NGP ARRIBA other 23 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_90B22NGP ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_90B22NGP ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_90B22NGP ARRIBA other 8 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_912NX4Y0 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_912NX4Y0 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_912NX4Y0 ARRIBA frameshift 9 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_912NX4Y0 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_912NX4Y0 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_912NX4Y0 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_912NX4Y0 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_912NX4Y0 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_912NX4Y0 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_912NX4Y0 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_912NX4Y0 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_912NX4Y0 ARRIBA in-frame 33 9 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +7:127242695 7:127243515 GRM8--GRM8 BS_912NX4Y0 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_912NX4Y0 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_912NX4Y0 ARRIBA frameshift 9 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_912NX4Y0 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_912NX4Y0 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_912NX4Y0 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_912NX4Y0 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_912NX4Y0 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_912NX4Y0 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_912NX4Y0 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_912NX4Y0 ARRIBA frameshift 9 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_912NX4Y0 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +1:196373140 1:196469068 KCNT2--KCNT2 BS_912NX4Y0 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_912NX4Y0 ARRIBA other 6 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +10:45459740 10:45461411 MARCH8--MARCH8 BS_912NX4Y0 ARRIBA frameshift 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr10:0.14Mb]],duplication MARCH8 NA MARCH8 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_912NX4Y0 ARRIBA other 10 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +8:2492872 8:2494091 MYOM2(327320)/AC245519.1(1004)--AC245519.1 BS_912NX4Y0 ARRIBA other 8 1 medium [],duplication MYOM2 AC245519.1 AC245519.1 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_912NX4Y0 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_912NX4Y0 ARRIBA in-frame 19 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_912NX4Y0 ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_91VYM11A ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_91VYM11A ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:49586757 6:52995788 AL139099.5--7SK BS_91VYM11A STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +15:100629732 8:56477901 ASB7--SEPT10P1 BS_91VYM11A ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr15--chr8]],translocation ASB7 NA SEPT10P1 NA NA NA NA NA NA +22:45702847 4:72128585 ATXN10--NPFFR2 BS_91VYM11A ARRIBA in-frame 4 0 medium [INTERCHROMOSOMAL[chr22--chr4]],translocation ATXN10 NA NPFFR2 NA NA NA NA NA NA +12:24948927 1:175066852 BCAT1--TNN BS_91VYM11A ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr12--chr1]],translocation BCAT1 NA TNN NA NA Oncogene NA NA NA +5:88684658 2:135175327 LINC00461--RAB3GAP1 BS_91VYM11A ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr5--chr2]],translocation LINC00461 NA RAB3GAP1 NA NA NA NA NA NA +3:50104308 3:67614108 RBM5--SUCLG2 BS_91VYM11A ARRIBA frameshift 2 0 high [INTRACHROMOSOMAL[chr3:17.24Mb]],deletion/5'-5' RBM5 NA SUCLG2 NA TumorSuppressorGene, Oncogene NA NA NA NA +14:49586757 6:52995788 RN7SL1--7SK BS_91VYM11A STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_91VYM11A ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:18828106 11:124518518 SMG1--OR8B10P(1276)/AP000916.2(13107) BS_91VYM11A ARRIBA frameshift 2 0 low [],translocation SMG1 NA OR8B10P AP000916.2 Kinase, Kinase NA NA NA NA +15:101711880 4:6287093 TARSL2--WFS1 BS_91VYM11A ARRIBA in-frame 45 3 high [INTERCHROMOSOMAL[chr15--chr4]],translocation TARSL2 NA WFS1 NA NA NA NA NA NA +15:101711880 4:6287093 TARSL2--WFS1 BS_91VYM11A STARFUSION frameshift 47 4 NA [INTERCHROMOSOMAL[chr15--chr4]] TARSL2 NA WFS1 NA NA NA NA NA NA +8:93820236 8:93786223 TMEM67(1002)/AC084346.1(14218)--TMEM67 BS_91VYM11A ARRIBA other 1 0 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +4:6270014 8:56171189 WFS1--PLAG1 BS_91VYM11A ARRIBA other 119 4 high [INTERCHROMOSOMAL[chr4--chr8]],translocation WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +4:6270014 8:56179513 WFS1--PLAG1 BS_91VYM11A ARRIBA other 32 7 high [INTERCHROMOSOMAL[chr4--chr8]],translocation WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +4:6270014 8:56171189 WFS1--PLAG1 BS_91VYM11A STARFUSION other 124 7 NA [INTERCHROMOSOMAL[chr4--chr8]] WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +4:6270014 8:56179513 WFS1--PLAG1 BS_91VYM11A STARFUSION other 34 7 NA [INTERCHROMOSOMAL[chr4--chr8]] WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +9:6413643 9:6536236 UHRF2--GLDC BS_92MT680S ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.03Mb],LOCAL_INVERSION:+:-:[25410]],inversion UHRF2 NA GLDC NA TumorSuppressorGene, Oncogene NA NA NA NA +10:11997672 20:24049652 UPF2--POM121L3P(59198)/AL110503.1(92938) BS_92MT680S ARRIBA frameshift 3 0 high [],translocation UPF2 NA POM121L3P AL110503.1 NA NA NA NA NA +11:22838364 11:22674850 AC006299.1--GAS2 BS_92VDQ0NE ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr11:0.02Mb],LOCAL_REARRANGEMENT:+:[16325]],duplication AC006299.1 NA GAS2 NA NA NA NA NA NA +11:22838364 11:22737705 AC006299.1--GAS2 BS_92VDQ0NE ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.02Mb],LOCAL_REARRANGEMENT:+:[16325]],duplication AC006299.1 NA GAS2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_92VDQ0NE ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_92VDQ0NE ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_92VDQ0NE ARRIBA other 12 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +5:137770003 5:137859263 AC106791.2(8067)/NPY6R(31190)--AC106791.1 BS_92VDQ0NE ARRIBA other 1 0 low [],duplication AC106791.2 NPY6R AC106791.1 NA NA NA NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_92VDQ0NE ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_92VDQ0NE ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_92VDQ0NE ARRIBA frameshift 25 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_92VDQ0NE ARRIBA in-frame 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_92VDQ0NE ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211107377 AL590132.1--KCNH1 BS_92VDQ0NE ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_92VDQ0NE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211107377 AL590132.1--KCNH1 BS_92VDQ0NE ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_92VDQ0NE ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_92VDQ0NE ARRIBA frameshift 23 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_92VDQ0NE ARRIBA other 4 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +2:231331897 2:231282059 ARMC9--ARMC9 BS_92VDQ0NE ARRIBA in-frame 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing ARMC9 NA ARMC9 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_92VDQ0NE ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_92VDQ0NE ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +9:23731022 9:23765099 ELAVL2--ELAVL2 BS_92VDQ0NE ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_92VDQ0NE ARRIBA in-frame 103 12 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +15:59516840 15:59514289 FAM81A--FAM81A BS_92VDQ0NE ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.15Mb]],duplication/non-canonical_splicing FAM81A NA FAM81A NA NA NA NA NA NA +1:74492266 1:74439490 FPGT-TNNI3K--FPGT-TNNI3K BS_92VDQ0NE ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_92VDQ0NE ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_92VDQ0NE ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_92VDQ0NE ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_92VDQ0NE ARRIBA frameshift 25 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_92VDQ0NE ARRIBA frameshift 23 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_92VDQ0NE ARRIBA in-frame 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_92VDQ0NE ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_92VDQ0NE ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211107377 KCNH1--AL590132.1 BS_92VDQ0NE ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_92VDQ0NE ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_92VDQ0NE ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:211082898 KCNH1--AL590132.1 BS_92VDQ0NE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:211019256 KCNH1--AL590132.1 BS_92VDQ0NE ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_92VDQ0NE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211107377 KCNH1--AL590132.1 BS_92VDQ0NE ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_92VDQ0NE ARRIBA frameshift 25 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_92VDQ0NE ARRIBA frameshift 16 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_92VDQ0NE ARRIBA other 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_92VDQ0NE ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +14:38745144 14:38334252 LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_92VDQ0NE ARRIBA other 3 0 low [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_92VDQ0NE ARRIBA in-frame 18 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_92VDQ0NE ARRIBA other 2 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_92VDQ0NE ARRIBA other 4 0 medium [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_92VDQ0NE ARRIBA other 13 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +13:35110978 15:20646463 NBEA--AC023310.4(3015)/NBEAP1(11175) BS_92VDQ0NE ARRIBA frameshift 3 0 medium [],translocation NBEA NA AC023310.4 NBEAP1 CosmicCensus NA NA Oncogene NA +11:20960560 11:20937786 NELL1--NELL1 BS_92VDQ0NE ARRIBA in-frame 21 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +Y:5100707 Y:5098215 PCDH11Y--PCDH11Y BS_92VDQ0NE ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chrY:0.74Mb]],duplication/non-canonical_splicing PCDH11Y NA PCDH11Y NA NA NA NA NA NA +7:92492286 7:92457552 PEX1--GATAD1 BS_92VDQ0NE ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:0.03Mb],LOCAL_INVERSION:-:+:[28184]],duplication/3'-3' PEX1 NA GATAD1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_92VDQ0NE ARRIBA in-frame 32 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_92VDQ0NE ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_92VDQ0NE ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:158617205 4:158607972 RXFP1--RXFP1 BS_92VDQ0NE ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA +12:21292164 12:21306988 SLCO1A2--SLCO1A2 BS_92VDQ0NE ARRIBA in-frame 17 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA +6:146911552 6:147119477 STXBP5-AS1--STXBP5-AS1 BS_92VDQ0NE ARRIBA other 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.36Mb]],duplication/non-canonical_splicing STXBP5-AS1 NA STXBP5-AS1 NA NA NA NA NA NA +X:146955175 X:146916390 Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_92VDQ0NE ARRIBA other 14 3 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_94MT16N2 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_94MT16N2 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_94MT16N2 ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_94MT16N2 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_9755PSCS ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_9755PSCS ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:125438297 7:125401344 AC073486.1--AC010099.4(22023)/AC073486.1(30003) BS_9755PSCS ARRIBA other 4 0 high [],duplication AC073486.1 NA AC010099.4 AC073486.1 NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_9755PSCS ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_9755PSCS ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +X:77785982 X:77971621 ATRX--ATP7A BS_9755PSCS ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chrX:0.12Mb]],inversion ATRX NA ATP7A NA CosmicCensus, Oncogene NA NA NA NA +X:77785982 X:77971621 ATRX--ATP7A BS_9755PSCS STARFUSION other 8 0 NA [INTRACHROMOSOMAL[chrX:0.12Mb]] ATRX NA ATP7A NA CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_9755PSCS ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:28386004 8:36092156 ZNF395--AC124290.1 BS_9755PSCS ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:7.60Mb]],inversion/5'-5' ZNF395 NA AC124290.1 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_97M1E2DW ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_97M1E2DW ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:26200572 7:116699071 HNRNPA2B1--MET BS_97M1E2DW ARRIBA frameshift 14 2 medium [INTRACHROMOSOMAL[chr7:90.47Mb]],inversion HNRNPA2B1 NA MET NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:26200572 7:116731668 HNRNPA2B1--MET BS_97M1E2DW ARRIBA in-frame 10 0 medium [INTRACHROMOSOMAL[chr7:90.47Mb]],inversion HNRNPA2B1 NA MET NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:26200572 7:116695750 HNRNPA2B1--MET BS_97M1E2DW ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr7:90.47Mb]],inversion HNRNPA2B1 NA MET NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:26200572 7:116699071 HNRNPA2B1--MET BS_97M1E2DW STARFUSION frameshift 15 3 NA [INTRACHROMOSOMAL[chr7:90.47Mb]] HNRNPA2B1 NA MET NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:26200572 7:116731668 HNRNPA2B1--MET BS_97M1E2DW STARFUSION in-frame 10 3 NA [INTRACHROMOSOMAL[chr7:90.47Mb]] HNRNPA2B1 NA MET NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:104736911 3:43580472 LHFPL3--ANO10 BS_97M1E2DW ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr7--chr3]],translocation LHFPL3 NA ANO10 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_97M1E2DW ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_97M1E2DW ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_983Z6CA6 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_983Z6CA6 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +22:23854725 2:119245489 DERL3(15597)/AP000350.5(1702)--STEAP3 BS_983Z6CA6 ARRIBA other 4 0 medium [],translocation DERL3 AP000350.5 STEAP3 NA NA NA NA NA NA +2:157321487 9:91769346 ERMN--ROR2 BS_983Z6CA6 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr2--chr9]],translocation ERMN NA ROR2 NA NA Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_983Z6CA6 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_983Z6CA6 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_996ZS2A4 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_996ZS2A4 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_996ZS2A4 STARFUSION other 23 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +11:1804217 7:5529665 AC139143.1(122)/SYT8(24090)--ACTB BS_996ZS2A4 ARRIBA other 6 0 medium [],translocation AC139143.1 SYT8 ACTB NA NA Oncogene NA NA NA +10:70675178 10:70667505 ADAMTS14--PRF1(64730)/ADAMTS14(5298) BS_996ZS2A4 ARRIBA frameshift 8 0 medium [],duplication ADAMTS14 NA PRF1 ADAMTS14 NA CosmicCensus, Oncogene NA NA NA +1:240438210 1:240257945 FMN2--FMN2 BS_996ZS2A4 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing FMN2 NA FMN2 NA NA NA NA NA NA +22:36285121 22:36526131 MYH9--EIF3D BS_996ZS2A4 ARRIBA in-frame 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr22:0.12Mb]],duplication MYH9 NA EIF3D NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +4:118251569 4:118298938 NDST3--PRSS12 BS_996ZS2A4 ARRIBA other 9 3 medium [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_INVERSION:+:-:[21390]],duplication/3'-3' NDST3 NA PRSS12 NA NA NA NA NA NA +7:103355793 7:103776627 PSMC2--RELN BS_996ZS2A4 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:0.10Mb]],inversion PSMC2 NA RELN NA NA NA NA NA NA +7:77639324 7:76248188 PTPN12--SRRM3 BS_996ZS2A4 ARRIBA other 1 1 high [CCLE,INTRACHROMOSOMAL[chr7:1.25Mb]],duplication PTPN12 NA SRRM3 NA TumorSuppressorGene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_996ZS2A4 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:7205815 10:6871962 SFMBT2--LINC00707(29056)/AL392086.1(19495) BS_996ZS2A4 ARRIBA frameshift 5 1 high [],inversion SFMBT2 NA LINC00707 AL392086.1 Oncogene NA NA NA NA +2:221455547 4:37844364 EPHA4--PGM2 BS_99B1XRZQ ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr2--chr4]],translocation EPHA4 NA PGM2 NA Kinase, Kinase NA NA NA NA +3:131273574 3:133045902 NEK11--TMEM108 BS_99B1XRZQ ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:1.69Mb]],deletion NEK11 NA TMEM108 NA Kinase, Kinase NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_9BJARSX3 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_9BJARSX3 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_9BJARSX3 ARRIBA other 24 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_9BJARSX3 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +14:49586873 6:52995642 AL139099.5--7SK BS_9BJARSX3 STARFUSION other 5 13 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +14:49586788 6:52995791 AL139099.5--7SK BS_9BJARSX3 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +9:119208719 9:119214155 BRINP1--BRINP1 BS_9BJARSX3 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +7:1493010 7:1609300 INTS1--PSMG3-AS1(19674)/TFAMP1(5290) BS_9BJARSX3 ARRIBA frameshift 8 0 high [],duplication INTS1 NA PSMG3-AS1 TFAMP1 NA NA NA NA NA +X:150471490 X:150469745 MAMLD1--MAMLD1 BS_9BJARSX3 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_9BJARSX3 ARRIBA other 24 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +14:49586872 6:52995644 RN7SL1--7SK BS_9BJARSX3 STARFUSION other 5 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +14:49586785 6:52995791 RN7SL1--7SK BS_9BJARSX3 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_9BJARSX3 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_9CA93S6D ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_9CA93S6D ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:77694738 10:81084290 ALKBH1--WARS2P1(143089)/RPA2P2(52250) BS_9CA93S6D ARRIBA frameshift 4 0 high [],translocation ALKBH1 NA WARS2P1 RPA2P2 NA NA NA NA NA +11:108723462 11:109267185 DDX10--SNORD39(3621)/AP003049.2(87900) BS_9CA93S6D ARRIBA frameshift 4 0 medium [],deletion DDX10 NA SNORD39 AP003049.2 CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_9CA93S6D ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:210035244 2:210015973 AC007038.1--RPE BS_9DFBHHB5 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_9DFBHHB5 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_9DFBHHB5 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_9DFBHHB5 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_9DFBHHB5 ARRIBA other 8 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +8:68468820 8:68439499 C8orf34--C8orf34 BS_9DFBHHB5 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.49Mb]],duplication/non-canonical_splicing C8orf34 NA C8orf34 NA NA NA NA NA NA +9:22127402 9:22029433 CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_9DFBHHB5 ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_9DFBHHB5 ARRIBA other 9 2 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +12:69262562 14:60115719 CPSF6--PCNX4 BS_9DFBHHB5 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr12--chr14]],translocation CPSF6 NA PCNX4 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_9DFBHHB5 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_9DFBHHB5 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_9DFBHHB5 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +12:10493796 12:10522927 KLRC1(39111)/AC068775.1(11806)--AC068775.1 BS_9DFBHHB5 ARRIBA other 3 2 medium [],duplication KLRC1 AC068775.1 AC068775.1 NA NA NA NA NA NA +7:92492286 7:92457552 PEX1--GATAD1 BS_9DFBHHB5 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:0.03Mb],LOCAL_INVERSION:-:+:[28184]],duplication/3'-3' PEX1 NA GATAD1 NA NA NA NA NA NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_9DFBHHB5 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_9DFBHHB5 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +7:157571440 7:157595315 PTPRN2--PTPRN2 BS_9DFBHHB5 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:1.05Mb]],duplication/non-canonical_splicing PTPRN2 NA PTPRN2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_9DFBHHB5 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:110420497 5:110528835 TMEM232--TMEM232 BS_9DFBHHB5 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_9DFBHHB5 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +6:52995906 9:35657995 7SK--RMRP BS_9DZ253JY STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr1--chr9]] 7SK NA RMRP NA NA Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_9DZ253JY ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_9DZ253JY ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_9DZ253JY ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_9DZ253JY ARRIBA other 14 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +1:172038461 1:172032402 DNM3--DNM3 BS_9DZ253JY ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing DNM3 NA DNM3 NA NA NA NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_9DZ253JY ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_9DZ253JY ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146357694 6:146159348 GRM1--GRM1 BS_9DZ253JY ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_9DZ253JY ARRIBA frameshift 35 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_9DZ253JY ARRIBA other 10 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +8:124555742 8:124558832 MTSS1--MTSS1 BS_9DZ253JY ARRIBA frameshift 6 3 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_9DZ253JY ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +1:183286662 1:183293793 NMNAT2--NMNAT2 BS_9DZ253JY ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.17Mb]],duplication/non-canonical_splicing NMNAT2 NA NMNAT2 NA NA NA NA NA NA +15:76009200 15:76052983 NRG4--NRG4 BS_9DZ253JY ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +11:64685646 11:64685947 NRXN2--NRXN2 BS_9DZ253JY ARRIBA frameshift 20 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.12Mb]],duplication/non-canonical_splicing NRXN2 NA NRXN2 NA Oncogene Oncogene NA NA NA +12:62689699 12:62720289 PPM1H--PPM1H BS_9DZ253JY ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.29Mb]],duplication/non-canonical_splicing PPM1H NA PPM1H NA NA NA NA NA NA +14:101877727 19:54103116 PPP2R5C--NDUFA3 BS_9DZ253JY ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr14--chr19]],translocation PPP2R5C NA NDUFA3 NA TumorSuppressorGene NA NA NA NA +12:70656704 12:70662605 PTPRR--PTPRR BS_9DZ253JY ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_9DZ253JY ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_9DZ253JY ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:79671133 10:87449476 AL132656.2--MINPP1 BS_9E7YVFJM ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr10:7.83Mb]],deletion AL132656.2 NA MINPP1 NA NA NA NA NA NA +14:49586854 14:20343397 AL139099.5--AL355075.4 BS_9E7YVFJM STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586872 14:20343402 AL139099.5--AL355075.4 BS_9E7YVFJM STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586856 14:20343394 AL139099.5--RPPH1 BS_9E7YVFJM STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +14:49586872 14:20343402 AL139099.5--RPPH1 BS_9E7YVFJM STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +14:20343257 14:49586593 AL355075.4--AL139099.5 BS_9E7YVFJM STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA AL139099.5 NA NA NA NA NA NA +14:20343257 14:49586589 AL355075.4--RN7SL1 BS_9E7YVFJM STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA RN7SL1 NA NA NA NA NA NA +14:49586856 14:20343394 RN7SL1--AL355075.4 BS_9E7YVFJM STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586872 14:20343402 RN7SL1--AL355075.4 BS_9E7YVFJM STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586854 14:20343397 RN7SL1--RPPH1 BS_9E7YVFJM STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +14:49586872 14:20343402 RN7SL1--RPPH1 BS_9E7YVFJM STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +14:20343257 14:49586590 RPPH1--AL139099.5 BS_9E7YVFJM STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA AL139099.5 NA NA NA NA NA NA +14:20343257 14:49586593 RPPH1--RN7SL1 BS_9E7YVFJM STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_9F09XV62 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_9F09XV62 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +X:149490314 X:149542019 AC244197.3--CXorf40A BS_9F09XV62 ARRIBA frameshift 36 3 high [INTRACHROMOSOMAL[chrX:0.01Mb],LOCAL_INVERSION:-:+:[6420]],inversion AC244197.3 NA CXorf40A NA NA NA NA NA NA +X:149490314 X:149542019 AC244197.3--CXorf40A BS_9F09XV62 STARFUSION other 38 3 NA [INTRACHROMOSOMAL[chrX:0.01Mb],LOCAL_INVERSION:-:+:[6420]] AC244197.3 NA CXorf40A NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_9F09XV62 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_9F09XV62 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_9F09XV62 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_9F09XV62 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_9F09XV62 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_9F09XV62 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_9F09XV62 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +3:57357176 3:57363786 DNAH12--DNAH12 BS_9F09XV62 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +X:149490314 X:149542019 IDS--CXorf40A BS_9F09XV62 ARRIBA frameshift 36 3 high [CCLE,INTRACHROMOSOMAL[chrX:0.02Mb],LOCAL_INVERSION:-:+:[19259]],inversion IDS NA CXorf40A NA NA NA NA NA NA +X:149490314 X:149542019 IDS--CXorf40A BS_9F09XV62 STARFUSION other 38 3 NA [CCLE,INTRACHROMOSOMAL[chrX:0.02Mb],LOCAL_INVERSION:-:+:[19259]] IDS NA CXorf40A NA NA NA NA NA NA +X:149490314 X:149534175 IDS--LINC00893 BS_9F09XV62 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chrX:0.01Mb],LOCAL_REARRANGEMENT:-:[6495]],inversion/5'-5' IDS NA LINC00893 NA NA NA NA NA NA +X:149490314 X:149529593 IDS--LINC00893 BS_9F09XV62 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chrX:0.01Mb],LOCAL_REARRANGEMENT:-:[6495]],duplication IDS NA LINC00893 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_9F09XV62 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_9F09XV62 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_9F09XV62 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_9F09XV62 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_9F09XV62 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_9F09XV62 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +7:30391035 7:30362377 LINC01176--ZNRF2 BS_9F09XV62 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_REARRANGEMENT:+:[23193]],duplication LINC01176 NA ZNRF2 NA NA NA NA NA NA +7:1436742 7:139631725 MICALL2--HIPK2 BS_9F09XV62 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr7:138.10Mb]],duplication MICALL2 NA HIPK2 NA NA Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA +12:44665484 12:44714741 NELL2--NELL2 BS_9F09XV62 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_9F09XV62 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_9F09XV62 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_9F09XV62 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_9FHSNVS0 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_9FHSNVS0 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_9FHSNVS0 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:17706079 17:36350059 AC104451.1--TBC1D3G(15300)/TBC1D3H(27472) BS_9G69F50J ARRIBA other 6 0 low [],translocation AC104451.1 NA TBC1D3G TBC1D3H NA NA NA NA NA +6:52995915 14:49586719 7SK--AL139099.5 BS_9GJ23RHH STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL139099.5 NA NA NA NA NA NA +6:52995910 14:49586720 7SK--RN7SL1 BS_9GJ23RHH STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_9GJ23RHH ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +11:118482495 10:21651673 KMT2A--MLLT10 BS_9GJ23RHH ARRIBA in-frame 17 1 high [Mitelman,Cosmic,HGNC_GENEFAM,ChimerKB,ChimerSeq,INTERCHROMOSOMAL[chr11--chr10]],translocation KMT2A NA MLLT10 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA +10:21617207 11:118527405 MLLT10--AP001267.3 BS_9GJ23RHH ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr10--chr11]],translocation/5'-5' MLLT10 NA AP001267.3 NA CosmicCensus, Oncogene NA NA NA NA +10:21568484 8:74353254 MLLT10--GDAP1 BS_9GJ23RHH ARRIBA other 8 1 medium [INTERCHROMOSOMAL[chr10--chr8]],translocation/5'-5' MLLT10 NA GDAP1 NA CosmicCensus, Oncogene NA NA NA NA +10:21538912 8:74315620 MLLT10--JPH1 BS_9GJ23RHH ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr10--chr8]],translocation MLLT10 NA JPH1 NA CosmicCensus, Oncogene NA NA NA NA +18:62717259 8:74360137 PHLPP1--GDAP1 BS_9GJ23RHH ARRIBA in-frame 16 0 high [INTERCHROMOSOMAL[chr18--chr8]],translocation PHLPP1 NA GDAP1 NA TumorSuppressorGene, Oncogene NA NA NA NA +18:62717259 8:74360137 PHLPP1--GDAP1 BS_9GJ23RHH STARFUSION in-frame 16 0 NA [INTERCHROMOSOMAL[chr18--chr8]] PHLPP1 NA GDAP1 NA TumorSuppressorGene, Oncogene NA NA NA NA +6:75678927 6:75670553 SENP6--SENP6 BS_9GJ23RHH ARRIBA frameshift 27 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.12Mb]],duplication/non-canonical_splicing SENP6 NA SENP6 NA NA NA NA NA NA +11:117098143 10:21586294 SIK3--MLLT10 BS_9GJ23RHH ARRIBA in-frame 4 2 high [INTERCHROMOSOMAL[chr11--chr10]],translocation SIK3 NA MLLT10 NA Oncogene, Kinase CosmicCensus, Oncogene NA NA NA +12:32306122 12:32305697 BICD1--BICD1 BS_9HA238XS ARRIBA in-frame 4 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing BICD1 NA BICD1 NA NA NA NA NA NA +14:49862572 6:52995786 RN7SL2--7SK BS_9HA238XS STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862573 6:52995749 RN7SL2--7SK BS_9HA238XS STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_9HSGV9TJ ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_9HSGV9TJ ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_9HSGV9TJ ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93557472 AC110023.1--AC091078.1 BS_9HSGV9TJ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_9HSGV9TJ ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:125186866 12:103987050 TMEM132B--TDG BS_9HSGV9TJ ARRIBA other 9 0 high [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_9M5XJ10G ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_9M5XJ10G ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_9M5XJ10G ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +20:46485529 20:46504740 AL031686.1--ZNF334 BS_9M5XJ10G ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_9M5XJ10G ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46474501 20:46503097 AL031686.1--ZNF334 BS_9M5XJ10G ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +14:49586855 14:20343399 AL139099.5--RPPH1 BS_9M5XJ10G STARFUSION other 4 8 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_9M5XJ10G ARRIBA other 5 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +2:189689964 2:189665376 ANKAR--ASNSD1 BS_9M5XJ10G ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[3459]],duplication ANKAR NA ASNSD1 NA NA NA NA NA NA +11:95559144 11:95497494 AP001790.1(61591)/AP000820.1(138942)--AP001790.1 BS_9M5XJ10G ARRIBA other 4 0 high [],duplication AP001790.1 AP000820.1 AP001790.1 NA NA NA NA NA NA +6:22400643 6:22349229 CASC15(32315)/HDGFL1(168850)--CASC15 BS_9M5XJ10G ARRIBA other 6 1 medium [],duplication CASC15 HDGFL1 CASC15 NA NA NA NA NA NA +9:100585927 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_9M5XJ10G ARRIBA frameshift 2 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100576516 CAVIN4--TMEFF1 BS_9M5XJ10G ARRIBA frameshift 2 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:14609850 9:14674385 CDCA4P1(15650)/ZDHHC21(1221)--ZDHHC21 BS_9M5XJ10G ARRIBA other 3 0 high [],duplication CDCA4P1 ZDHHC21 ZDHHC21 NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_9M5XJ10G ARRIBA frameshift 88 9 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_9M5XJ10G ARRIBA frameshift 10 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_9M5XJ10G STARFUSION other 12 3 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +14:59456438 14:59551436 GPR135--CCDC175 BS_9M5XJ10G ARRIBA other 3 1 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59565275 GPR135--CCDC175 BS_9M5XJ10G ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59551436 GPR135--CCDC175 BS_9M5XJ10G ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +2:77518318 2:77522069 LRRTM4--LRRTM4 BS_9M5XJ10G ARRIBA frameshift 25 1 high [SELFIE,INTRACHROMOSOMAL[chr2:0.85Mb]],duplication LRRTM4 NA LRRTM4 NA NA NA NA NA NA +1:219218712 1:219210532 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_9M5XJ10G ARRIBA other 2 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +13:19726605 13:19835689 PSPC1--ZMYM5 BS_9M5XJ10G ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_9M5XJ10G ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19782386 13:19835689 PSPC1--ZMYM5 BS_9M5XJ10G ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +14:49586855 14:20343399 RN7SL1--AL355075.4 BS_9M5XJ10G STARFUSION other 4 8 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_9M5XJ10G ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_9M5XJ10G ARRIBA frameshift 10 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:114981512 1:114923449 SYCP1--SYCP1 BS_9M5XJ10G ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +5:136356608 5:136357385 TRPC7--TRPC7 BS_9M5XJ10G ARRIBA frameshift 50 4 low [SELFIE,INTRACHROMOSOMAL[chr5:0.15Mb]],duplication/non-canonical_splicing TRPC7 NA TRPC7 NA NA NA NA NA NA +17:18804266 17:15440285 TVP23B--CDRT4 BS_9M5XJ10G ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA +1:216321883 1:216327654 USH2A--USH2A BS_9M5XJ10G ARRIBA frameshift 32 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +3:167522315 3:167658326 WDR49--WDR49(4343)/PDCD10(24972) BS_9M5XJ10G ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +7:9189560 7:8612991 AC004852.2--NXPH1 BS_9NJHQE9F ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:0.33Mb]],deletion/5'-5' AC004852.2 NA NXPH1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_9NJHQE9F ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_9NJHQE9F ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:16426440 4:16238771 AC097515.1--TAPT1-AS1 BS_9NJHQE9F ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16256257 AC097515.1--TAPT1-AS1 BS_9NJHQE9F ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16320065 AC097515.1--TAPT1-AS1 BS_9NJHQE9F ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_9NJHQE9F ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +14:34916589 14:34934131 AL121603.2(40130)/SRP54-AS1(4269)--SRP54-AS1 BS_9NJHQE9F ARRIBA other 1 0 low [],duplication AL121603.2 SRP54-AS1 SRP54-AS1 NA NA NA NA NA NA +17:6926161 X:121164059 ALOX12-AS1--GLUD2(113979)/HSPA8P1(39123) BS_9NJHQE9F ARRIBA other 3 0 medium [],translocation ALOX12-AS1 NA GLUD2 HSPA8P1 NA NA NA NA NA +18:61507560 18:61500383 CDH20--CDH20 BS_9NJHQE9F ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.22Mb]],duplication/non-canonical_splicing CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA +3:113395750 3:113494142 CFAP44--SPICE1 BS_9NJHQE9F ARRIBA in-frame 2 0 high [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA +21:9373947 21:8864001 CR381653.2--CR381670.1 BS_9NJHQE9F ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr21:0.49Mb]],inversion CR381653.2 NA CR381670.1 NA NA NA NA NA NA +1:57440497 1:57291166 DAB1--DAB1 BS_9NJHQE9F ARRIBA other 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr1:1.55Mb]],inversion/3'-3' DAB1 NA DAB1 NA NA NA NA NA NA +1:58506060 1:58539310 DAB1--OMA1 BS_9NJHQE9F ARRIBA other 12 2 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58253807 1:58539310 DAB1--OMA1 BS_9NJHQE9F ARRIBA other 3 6 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58536741 DAB1--OMA1 BS_9NJHQE9F ARRIBA other 7 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58534331 DAB1--OMA1 BS_9NJHQE9F ARRIBA other 7 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58527261 1:58539310 DAB1--OMA1 BS_9NJHQE9F ARRIBA frameshift 4 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +8:131970643 8:131944745 EFR3A--EFR3A BS_9NJHQE9F ARRIBA frameshift 6 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_9NJHQE9F ARRIBA frameshift 25 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +4:15612266 4:15017881 FBXL5--AC098829.1 BS_9NJHQE9F ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr4:0.18Mb]],deletion FBXL5 NA AC098829.1 NA NA NA NA NA NA +4:15612266 4:15066397 FBXL5--AC098829.1 BS_9NJHQE9F ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.18Mb]],deletion FBXL5 NA AC098829.1 NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_9NJHQE9F ARRIBA frameshift 14 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_9NJHQE9F ARRIBA other 7 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +14:59456438 14:59551436 GPR135--CCDC175 BS_9NJHQE9F ARRIBA other 2 1 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59540746 GPR135--CCDC175 BS_9NJHQE9F ARRIBA other 3 0 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59521676 GPR135--CCDC175 BS_9NJHQE9F ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +16:85463125 16:85751038 GSE1--C16orf74 BS_9NJHQE9F ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr16:0.01Mb],LOCAL_INVERSION:+:-:[13880]],inversion GSE1 NA C16orf74 NA Oncogene NA NA NA NA +2:210098086 2:210220811 KANSL1L--ACADL BS_9NJHQE9F ARRIBA in-frame 1 2 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]],duplication KANSL1L NA ACADL NA NA NA NA NA NA +2:210104104 2:210220802 KANSL1L--ACADL BS_9NJHQE9F ARRIBA frameshift 1 1 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]],duplication KANSL1L NA ACADL NA NA NA NA NA NA +2:210098086 2:210220802 KANSL1L--ACADL BS_9NJHQE9F STARFUSION in-frame 11 2 NA [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]] KANSL1L NA ACADL NA NA NA NA NA NA +5:144207546 5:144206389 KCTD16--KCTD16 BS_9NJHQE9F ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.31Mb]],duplication/non-canonical_splicing KCTD16 NA KCTD16 NA NA NA NA NA NA +14:59475869 14:59565275 L3HYPDH--CCDC175 BS_9NJHQE9F ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59551436 L3HYPDH--CCDC175 BS_9NJHQE9F ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59479182 14:59543454 L3HYPDH--CCDC175 BS_9NJHQE9F ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59525434 L3HYPDH--CCDC175 BS_9NJHQE9F ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +17:6525356 17:6590630 PITPNM3--KIAA0753 BS_9NJHQE9F ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA +17:6525356 17:6590578 PITPNM3--KIAA0753 BS_9NJHQE9F ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA +1:229313760 1:229286486 RAB4A(7866)/AL117350.1(5643)--RAB4A BS_9NJHQE9F ARRIBA other 5 0 medium [],duplication RAB4A AL117350.1 RAB4A NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_9NJHQE9F ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:216046431 1:216207431 USH2A--USH2A BS_9NJHQE9F ARRIBA in-frame 18 5 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_9NZ2D6AD ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_9NZ2D6AD ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_9NZ2D6AD ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +12:122346874 12:122354556 CLIP1--CLIP1 BS_9NZ2D6AD ARRIBA other 9 0 high [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.15Mb]],inversion/3'-3' CLIP1 NA CLIP1 NA CosmicCensus CosmicCensus NA NA NA +12:122330346 12:122327853 CLIP1--CLIP1 BS_9NZ2D6AD ARRIBA other 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.15Mb]],inversion/5'-5' CLIP1 NA CLIP1 NA CosmicCensus CosmicCensus NA NA NA +1:155813634 1:156535247 GON4L--IQGAP3 BS_9NZ2D6AD ARRIBA frameshift 3 0 high [ChimerSeq,INTRACHROMOSOMAL[chr1:0.67Mb]],duplication GON4L NA IQGAP3 NA NA NA NA NA TCGAFusion +12:122573285 12:122355312 KNTC1--CLIP1 BS_9NZ2D6AD ARRIBA in-frame 20 0 high [INTRACHROMOSOMAL[chr12:0.10Mb]],inversion KNTC1 NA CLIP1 NA NA CosmicCensus NA NA NA +2:15942854 2:16392253 MYCN--AC010880.1 BS_9NZ2D6AD ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.41Mb]],deletion MYCN NA AC010880.1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_9NZ2D6AD ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_9NZ2D6AD ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +14:90978306 14:91359711 RPS6KA5--CCDC88C BS_9NZ2D6AD ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr14:0.21Mb]],duplication RPS6KA5 NA CCDC88C NA Kinase NA NA NA NA +14:90978306 14:91379885 RPS6KA5--CCDC88C BS_9NZ2D6AD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.21Mb]],duplication RPS6KA5 NA CCDC88C NA Kinase NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_9NZ2D6AD ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +19:66346 2:242051920 WASH5P--LINC01237 BS_9P9MB8X8 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr19--chr2]],translocation WASH5P NA LINC01237 NA NA NA NA NA NA +19:66346 2:242078460 WASH5P--LINC01237 BS_9P9MB8X8 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr19--chr2]],translocation WASH5P NA LINC01237 NA NA NA NA NA NA +19:66346 2:242051920 WASH5P--LINC01880 BS_9P9MB8X8 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr19--chr2]],translocation/5'-5' WASH5P NA LINC01880 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_9PB3XH5D ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_9PB3XH5D ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:151841903 2:151855375 CACNB4--CACNB4 BS_9PB3XH5D ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication/non-canonical_splicing CACNB4 NA CACNB4 NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_9PB3XH5D ARRIBA frameshift 26 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_9PB3XH5D ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16323036 4:16288884 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_9PB3XH5D ARRIBA other 2 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_9PB3XH5D ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_9Q6Z6VJC ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_9Q6Z6VJC ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_9Q6Z6VJC ARRIBA other 12 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_9Q6Z6VJC ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_9Q6Z6VJC ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_9Q6Z6VJC ARRIBA frameshift 3 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +21:40692810 21:40708771 DSCAM--DSCAM BS_9Q6Z6VJC ARRIBA in-frame 18 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA +11:120905493 11:120861959 GRIK4--GRIK4 BS_9Q6Z6VJC ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.48Mb]],duplication/non-canonical_splicing GRIK4 NA GRIK4 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_9Q6Z6VJC ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_9Q6Z6VJC ARRIBA in-frame 7 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_9Q6Z6VJC ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_9Q6Z6VJC ARRIBA other 5 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +6:52995844 14:49862669 7SK--RN7SL2 BS_9RT63JD9 STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +5:91102340 5:90781430 ADGRV1--ADGRV1 BS_9RT63JD9 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_9RT63JD9 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_9RT63JD9 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_9RT63JD9 ARRIBA in-frame 14 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_9RT63JD9 ARRIBA frameshift 2 1 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_9RT63JD9 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +5:128141981 5:128114212 SLC12A2--SLC12A2 BS_9RT63JD9 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.11Mb]],duplication/non-canonical_splicing SLC12A2 NA SLC12A2 NA NA NA NA NA NA +4:16323036 4:16288884 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_9RT63JD9 ARRIBA other 4 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_9RT63JD9 ARRIBA other 4 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_9SJWWYQ4 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_9SJWWYQ4 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_9SJWWYQ4 ARRIBA other 4 0 low [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_9SJWWYQ4 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +19:7830381 19:7605226 EVI5L--CAMSAP3 BS_9SJWWYQ4 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr19:0.21Mb]],duplication EVI5L NA CAMSAP3 NA NA NA NA NA NA +7:138861139 7:140781693 KIAA1549--BRAF BS_9SJWWYQ4 ARRIBA in-frame 5 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_9SJWWYQ4 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:137032794 7:136619956 AC009264.1--AC009541.1(131639)/AC009264.1(65603) BS_9V633J1X ARRIBA other 1 1 high [],deletion AC009264.1 NA AC009541.1 AC009264.1 NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_9V633J1X ARRIBA other 39 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_9V633J1X ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +20:46474501 20:46496952 AL031686.1--AL031686.1(221)/ZNF334(2678) BS_9V633J1X ARRIBA other 3 2 medium [],duplication AL031686.1 NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_9V633J1X ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +2:201342370 2:201364173 ALS2CR12--ALS2CR12(6775)/TRAK2(13034) BS_9V633J1X ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_9V633J1X ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_9V633J1X ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_9V633J1X ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_9V633J1X ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_9V633J1X ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_9V633J1X ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +X:36085538 X:36065643 CFAP47--CFAP47 BS_9V633J1X ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_9V633J1X ARRIBA frameshift 28 4 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +7:65087825 7:65078624 GTF2IP14--AC073210.1 BS_9V633J1X ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[5323]],duplication GTF2IP14 NA AC073210.1 NA NA NA NA NA NA +7:65103439 7:65078624 GTF2IP14--AC073210.1 BS_9V633J1X ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[5323]],duplication GTF2IP14 NA AC073210.1 NA NA NA NA NA NA +7:65098832 7:65078624 GTF2IP14--AC073210.1 BS_9V633J1X ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[5323]],duplication GTF2IP14 NA AC073210.1 NA NA NA NA NA NA +17:21091179 17:21090268 LINC01563(564)/DHRS7B(32185)--LINC01563 BS_9V633J1X ARRIBA other 5 1 low [],duplication LINC01563 DHRS7B LINC01563 NA NA NA NA NA NA +5:135671747 5:135629237 LINC01959(17812)/AC011431.1(70715)--AC034206.1 BS_9V633J1X ARRIBA other 1 1 low [],duplication LINC01959 AC011431.1 AC034206.1 NA NA NA NA NA NA +20:46474501 20:46496952 MKRN7P--AL031686.1(221)/ZNF334(2678) BS_9V633J1X ARRIBA other 3 0 high [],duplication MKRN7P NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_9V633J1X ARRIBA other 39 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_9V633J1X ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19782386 13:19835689 PSPC1--ZMYM5 BS_9V633J1X ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +12:21292164 12:21306988 SLCO1A2--SLCO1A2 BS_9V633J1X ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA +13:49975875 13:50045232 SPRYD7(39385)/DLEU2(6677)--DLEU2 BS_9V633J1X ARRIBA other 1 0 low [],duplication SPRYD7 DLEU2 DLEU2 NA NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_9V633J1X ARRIBA other 8 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +19:21767548 10:22600103 ZNF100--PIP4K2A BS_9V633J1X ARRIBA other 6 2 medium [INTERCHROMOSOMAL[chr19--chr10]],translocation/3'-3' ZNF100 NA PIP4K2A NA TranscriptionFactor NA NA NA NA +2:55342684 2:29224084 AC012358.3--ALK BS_9XVACXP0 ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr2:25.36Mb]],deletion/3'-3' AC012358.3 NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:55343648 2:29223528 CCDC88A--ALK BS_9XVACXP0 ARRIBA in-frame 57 4 high [INTRACHROMOSOMAL[chr2:25.37Mb]],deletion CCDC88A NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:55343648 2:29223528 CCDC88A--ALK BS_9XVACXP0 STARFUSION in-frame 58 4 NA [INTRACHROMOSOMAL[chr2:25.37Mb]] CCDC88A NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +22:23854725 2:119245489 DERL3(15597)/AP000350.5(1702)--STEAP3 BS_9XVACXP0 ARRIBA other 22 0 high [],translocation DERL3 AP000350.5 STEAP3 NA NA NA NA NA NA +5:14871352 14:75278803 ANKH--FOS BS_9XWJ88Q1 ARRIBA in-frame 41 4 high [INTERCHROMOSOMAL[chr5--chr14]],translocation ANKH NA FOS NA NA Oncogene, TranscriptionFactor NA NA NA +5:14871352 14:75278803 ANKH--FOS BS_9XWJ88Q1 STARFUSION other 49 5 NA [INTERCHROMOSOMAL[chr5--chr14]] ANKH NA FOS NA NA Oncogene, TranscriptionFactor NA NA NA +7:37211386 7:37948840 ELMO1--EPDR1 BS_9XWJ88Q1 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:0.47Mb]],inversion ELMO1 NA EPDR1 NA Oncogene NA NA NA NA +14:75281004 5:14715400 FOS--ANKH BS_9XWJ88Q1 ARRIBA frameshift 152 14 high [INTERCHROMOSOMAL[chr14--chr5]],translocation/5'-5' FOS NA ANKH NA Oncogene, TranscriptionFactor NA NA NA NA +12:4669817 10:36035870 AC005833.3--AL365500.1(136907)/AL355300.1(53216) BS_A0DYVX9J ARRIBA other 3 1 medium [],translocation AC005833.3 NA AL365500.1 AL355300.1 NA NA NA NA NA +12:24368563 12:24997591 AC069208.1--C12orf77 BS_A0DYVX9J ARRIBA other 48 10 high [INTRACHROMOSOMAL[chr12:0.43Mb]],duplication AC069208.1 NA C12orf77 NA NA NA NA NA NA +12:24407485 12:24997591 AC069208.1--C12orf77 BS_A0DYVX9J ARRIBA other 1 5 high [INTRACHROMOSOMAL[chr12:0.43Mb]],duplication AC069208.1 NA C12orf77 NA NA NA NA NA NA +12:24562333 12:24997591 AC069208.1--C12orf77 BS_A0DYVX9J ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr12:0.43Mb]],duplication AC069208.1 NA C12orf77 NA NA NA NA NA NA +12:24368563 12:24996339 AC069208.1--C12orf77 BS_A0DYVX9J ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr12:0.43Mb]],duplication AC069208.1 NA C12orf77 NA NA NA NA NA NA +12:24368563 12:24997591 AC069208.1--C12orf77 BS_A0DYVX9J STARFUSION other 48 10 NA [INTRACHROMOSOMAL[chr12:0.43Mb]] AC069208.1 NA C12orf77 NA NA NA NA NA NA +9:37831730 9:134025334 AL138752.2--LINC00094 BS_A0DYVX9J ARRIBA other 1 3 medium [INTRACHROMOSOMAL[chr9:95.96Mb]],inversion AL138752.2 NA LINC00094 NA NA NA NA NA NA +9:37899829 9:134025845 AL138752.2--LINC00094 BS_A0DYVX9J ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr9:95.96Mb]],inversion AL138752.2 NA LINC00094 NA NA NA NA NA NA +9:37831730 9:134025334 AL138752.2--VAV2(32730)/LINC00094(105) BS_A0DYVX9J ARRIBA other 8 0 low [],inversion AL138752.2 NA VAV2 LINC00094 NA Oncogene NA NA NA +10:3256460 12:4299860 AL451164.1--CCND2 BS_A0DYVX9J ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr10--chr12]],translocation AL451164.1 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA +10:3256460 12:4299860 AL451164.1--CCND2 BS_A0DYVX9J STARFUSION other 9 1 NA [INTERCHROMOSOMAL[chr10--chr12]] AL451164.1 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA +12:56252015 10:51984967 ANKRD52--PRKG1 BS_A0DYVX9J ARRIBA frameshift 20 4 high [INTERCHROMOSOMAL[chr12--chr10]],translocation/5'-5' ANKRD52 NA PRKG1 NA NA Kinase NA NA NA +9:114604966 9:69856555 ATP6V1G1(6593)/TMEM268(6240)--C9orf135 BS_A0DYVX9J ARRIBA other 5 1 high [],inversion ATP6V1G1 TMEM268 C9orf135 NA NA NA NA NA NA +9:69857977 9:69517279 C9orf135--APBA1 BS_A0DYVX9J ARRIBA frameshift 15 1 high [INTRACHROMOSOMAL[chr9:0.15Mb]],inversion C9orf135 NA APBA1 NA NA NA NA NA NA +9:69857977 9:69517279 C9orf135--APBA1 BS_A0DYVX9J STARFUSION other 15 1 NA [INTRACHROMOSOMAL[chr9:0.15Mb]] C9orf135 NA APBA1 NA NA NA NA NA NA +9:69859631 9:7046862 C9orf135--KDM4C BS_A0DYVX9J ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr9:62.65Mb]],duplication C9orf135 NA KDM4C NA NA Oncogene NA NA NA +9:69857977 9:114612282 C9orf135--TMEM268 BS_A0DYVX9J ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:44.70Mb]],inversion/3'-3' C9orf135 NA TMEM268 NA NA NA NA NA NA +9:15553302 9:78364116 CCDC171--PSAT1(34023)/AL592221.1(225042) BS_A0DYVX9J ARRIBA other 6 0 high [],inversion CCDC171 NA PSAT1 AL592221.1 NA NA NA NA NA +12:4278919 10:1379160 CCND2--ADARB2 BS_A0DYVX9J ARRIBA in-frame 6 3 medium [INTERCHROMOSOMAL[chr12--chr10]],translocation CCND2 NA ADARB2 NA CosmicCensus, Oncogene Oncogene NA NA NA +12:4278919 10:1363917 CCND2--ADARB2 BS_A0DYVX9J ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr12--chr10]],translocation CCND2 NA ADARB2 NA CosmicCensus, Oncogene Oncogene NA NA NA +12:4278919 10:1379160 CCND2--ADARB2 BS_A0DYVX9J STARFUSION in-frame 6 3 NA [INTERCHROMOSOMAL[chr12--chr10]] CCND2 NA ADARB2 NA CosmicCensus, Oncogene Oncogene NA NA NA +12:4288990 10:3232582 CCND2--AL451164.2(5175)/AL451164.1(7789) BS_A0DYVX9J ARRIBA frameshift 5 3 medium [],translocation CCND2 NA AL451164.2 AL451164.1 CosmicCensus, Oncogene NA NA NA NA +12:4276059 10:1124218 CCND2-AS1--WDR37 BS_A0DYVX9J ARRIBA other 6 1 medium [INTERCHROMOSOMAL[chr12--chr10]],translocation CCND2-AS1 NA WDR37 NA Oncogene NA NA NA NA +12:4276059 10:1124218 CCND2-AS1--WDR37 BS_A0DYVX9J STARFUSION other 6 1 NA [INTERCHROMOSOMAL[chr12--chr10]] CCND2-AS1 NA WDR37 NA Oncogene NA NA NA NA +9:37831730 9:134025334 DCAF10--LINC00094 BS_A0DYVX9J ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr9:96.16Mb]],inversion/3'-3' DCAF10 NA LINC00094 NA NA NA NA NA NA +9:132642004 9:30589935 DDX31--AL354704.1(14923)/C2orf27AP2(81029) BS_A0DYVX9J ARRIBA frameshift 92 2 high [],inversion DDX31 NA AL354704.1 C2orf27AP2 NA NA NA NA NA +9:19305527 9:27080769 DENND4C--IFT74(17839)/AL355432.1(21861) BS_A0DYVX9J ARRIBA frameshift 32 2 high [],deletion DENND4C NA IFT74 AL355432.1 NA NA NA NA NA +9:19305527 9:27157831 DENND4C--TEK BS_A0DYVX9J ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr9:7.74Mb]],deletion DENND4C NA TEK NA NA Oncogene, Kinase NA NA NA +9:19300331 9:27157831 DENND4C--TEK BS_A0DYVX9J ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr9:7.74Mb]],deletion DENND4C NA TEK NA NA Oncogene, Kinase NA NA NA +9:19276479 9:27157831 DENND4C--TEK BS_A0DYVX9J ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:7.74Mb]],deletion DENND4C NA TEK NA NA Oncogene, Kinase NA NA NA +12:50741539 12:21089908 DIP2B--AC011604.2 BS_A0DYVX9J ARRIBA in-frame 6 0 high [],duplication DIP2B NA AC011604.2 NA NA NA NA NA NA +12:50741539 12:21089908 DIP2B--AC022335.1 BS_A0DYVX9J STARFUSION in-frame 6 0 NA [INTRACHROMOSOMAL[chr12:29.33Mb]] DIP2B NA AC022335.1 NA NA NA NA NA NA +12:50741539 12:21089908 DIP2B--SLCO1B7 BS_A0DYVX9J ARRIBA in-frame 6 0 high [INTRACHROMOSOMAL[chr12:29.41Mb]],duplication DIP2B NA SLCO1B7 NA NA NA NA NA NA +12:50741539 12:21089908 DIP2B--SLCO1B7 BS_A0DYVX9J STARFUSION in-frame 6 0 NA [INTRACHROMOSOMAL[chr12:29.41Mb]] DIP2B NA SLCO1B7 NA NA NA NA NA NA +9:137619049 9:69856555 EHMT1--C9orf135 BS_A0DYVX9J ARRIBA in-frame 9 0 medium [INTRACHROMOSOMAL[chr9:67.71Mb]],duplication EHMT1 NA C9orf135 NA Oncogene NA NA NA NA +9:137619049 9:69856555 EHMT1--C9orf135 BS_A0DYVX9J STARFUSION in-frame 20 0 NA [INTRACHROMOSOMAL[chr9:67.71Mb]] EHMT1 NA C9orf135 NA Oncogene NA NA NA NA +7:36861659 7:36674009 ELMO1--AOAH BS_A0DYVX9J STARFUSION frameshift 5 2 NA [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr7:0.13Mb]] ELMO1 NA AOAH NA Oncogene NA NA NA NA +12:1263165 12:24277312 ERC1--AC069208.1 BS_A0DYVX9J ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr12:22.72Mb]],inversion ERC1 NA AC069208.1 NA CosmicCensus, Oncogene NA NA NA NA +12:1263165 12:24277312 ERC1--AC069208.1 BS_A0DYVX9J STARFUSION other 4 2 NA [INTRACHROMOSOMAL[chr12:22.72Mb]] ERC1 NA AC069208.1 NA CosmicCensus, Oncogene NA NA NA NA +12:4814783 9:135765031 GALNT8--KCNT1 BS_A0DYVX9J ARRIBA other 12 2 high [INTERCHROMOSOMAL[chr12--chr9]],translocation GALNT8 NA KCNT1 NA NA NA NA NA NA +12:4814778 9:135765031 GALNT8--KCNT1 BS_A0DYVX9J ARRIBA other 8 2 high [INTERCHROMOSOMAL[chr12--chr9]],translocation GALNT8 NA KCNT1 NA NA NA NA NA NA +12:4765546 9:135765031 GALNT8--KCNT1 BS_A0DYVX9J ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr12--chr9]],translocation GALNT8 NA KCNT1 NA NA NA NA NA NA +12:4814783 9:135765031 GALNT8--KCNT1 BS_A0DYVX9J STARFUSION other 12 2 NA [INTERCHROMOSOMAL[chr12--chr9]] GALNT8 NA KCNT1 NA NA NA NA NA NA +12:4814778 9:135765031 GALNT8--KCNT1 BS_A0DYVX9J STARFUSION other 9 2 NA [INTERCHROMOSOMAL[chr12--chr9]] GALNT8 NA KCNT1 NA NA NA NA NA NA +9:78031100 9:69499384 GNAQ--APBA1 BS_A0DYVX9J ARRIBA frameshift 21 3 high [INTRACHROMOSOMAL[chr9:8.04Mb]],inversion/5'-5' GNAQ NA APBA1 NA CosmicCensus, Oncogene NA NA NA NA +9:77942196 9:69497908 GNAQ--APBA1 BS_A0DYVX9J ARRIBA other 26 5 medium [INTRACHROMOSOMAL[chr9:8.04Mb]],deletion GNAQ NA APBA1 NA CosmicCensus, Oncogene NA NA NA NA +22:23096418 22:31632947 GNAZ--PISD BS_A0DYVX9J ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr22:8.49Mb]],deletion/5'-5' GNAZ NA PISD NA NA NA NA NA NA +22:23096418 22:31616745 GNAZ--SFI1 BS_A0DYVX9J ARRIBA in-frame 10 3 high [INTRACHROMOSOMAL[chr22:8.36Mb]],deletion GNAZ NA SFI1 NA NA NA NA NA NA +22:23096418 22:31617000 GNAZ--SFI1 BS_A0DYVX9J ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr22:8.36Mb]],deletion GNAZ NA SFI1 NA NA NA NA NA NA +22:23096418 22:31616745 GNAZ--SFI1 BS_A0DYVX9J STARFUSION in-frame 10 2 NA [INTRACHROMOSOMAL[chr22:8.36Mb]] GNAZ NA SFI1 NA NA NA NA NA NA +8:28798641 10:1080011 INTS9-AS1--WDR37 BS_A0DYVX9J STARFUSION other 13 0 NA [INTERCHROMOSOMAL[chr8--chr10]] INTS9-AS1 NA WDR37 NA NA NA NA NA NA +9:7049200 9:134401632 KDM4C--RXRA BS_A0DYVX9J ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:127.14Mb]],deletion KDM4C NA RXRA NA Oncogene TranscriptionFactor NA NA NA +10:911725 12:753962 LARP4B--WNK1 BS_A0DYVX9J ARRIBA other 3 5 medium [INTERCHROMOSOMAL[chr10--chr12]],translocation/3'-3' LARP4B NA WNK1 NA CosmicCensus Kinase, Kinase NA NA NA +12:25015261 12:24297404 LRMP--AC069208.1 BS_A0DYVX9J ARRIBA frameshift 4 2 high [INTRACHROMOSOMAL[chr12:0.44Mb]],duplication/5'-5' LRMP NA AC069208.1 NA TumorSuppressorGene, Oncogene NA NA NA NA +12:57758300 12:57487937 MARCH9--MARS BS_A0DYVX9J ARRIBA frameshift 3 2 medium [INTRACHROMOSOMAL[chr12:0.24Mb]],duplication MARCH9 NA MARS NA NA Oncogene NA NA NA +12:57758300 12:57487937 MARCH9--MARS BS_A0DYVX9J STARFUSION other 3 3 NA [INTRACHROMOSOMAL[chr12:0.24Mb]] MARCH9 NA MARS NA NA Oncogene NA NA NA +12:57758710 10:28368583 MARCH9--ZNF101P1(27641)/U3(39456) BS_A0DYVX9J ARRIBA frameshift 128 5 high [],translocation MARCH9 NA ZNF101P1 U3 NA NA NA NA NA +9:132077442 10:39328089 MED27--AL590623.1(544981)/KSR1P1(2821221) BS_A0DYVX9J ARRIBA frameshift 6 0 medium [],translocation MED27 NA AL590623.1 KSR1P1 NA NA NA NA NA +9:100550160 9:131369505 MSANTD3-TMEFF1--PLPP7(60243)/PRRC2B(24588) BS_A0DYVX9J ARRIBA frameshift 3 1 high [],deletion MSANTD3-TMEFF1 NA PLPP7 PRRC2B NA NA NA NA NA +9:100550160 9:131430090 MSANTD3-TMEFF1--PRRC2B BS_A0DYVX9J ARRIBA frameshift 126 23 high [INTRACHROMOSOMAL[chr9:30.82Mb]],deletion MSANTD3-TMEFF1 NA PRRC2B NA NA NA NA NA NA +9:100550160 9:131432617 MSANTD3-TMEFF1--PRRC2B BS_A0DYVX9J ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr9:30.82Mb]],deletion MSANTD3-TMEFF1 NA PRRC2B NA NA NA NA NA NA +9:100509134 9:131432617 MSANTD3-TMEFF1--PRRC2B BS_A0DYVX9J ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:30.82Mb]],deletion MSANTD3-TMEFF1 NA PRRC2B NA NA NA NA NA NA +9:100550160 9:131430090 MSANTD3-TMEFF1--PRRC2B BS_A0DYVX9J STARFUSION other 147 33 NA [INTRACHROMOSOMAL[chr9:30.82Mb]] MSANTD3-TMEFF1 NA PRRC2B NA NA NA NA NA NA +12:56160320 12:50182037 MYL6--LIMA1 BS_A0DYVX9J ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr12:5.87Mb]],inversion MYL6 NA LIMA1 NA NA TumorSuppressorGene NA NA NA +12:56160320 12:50182037 MYL6--LIMA1 BS_A0DYVX9J STARFUSION frameshift 7 0 NA [INTRACHROMOSOMAL[chr12:5.87Mb]] MYL6 NA LIMA1 NA NA TumorSuppressorGene NA NA NA +12:4669817 10:36035870 NDUFA9--AL365500.1(136907)/AL355300.1(53216) BS_A0DYVX9J ARRIBA frameshift 3 1 medium [],translocation NDUFA9 NA AL365500.1 AL355300.1 NA NA NA NA NA +10:33207572 12:43844624 NRP1--TMEM117 BS_A0DYVX9J ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr10--chr12]],translocation NRP1 NA TMEM117 NA NA NA NA NA NA +10:33206296 12:43795768 NRP1--TWF1 BS_A0DYVX9J ARRIBA frameshift 6 1 medium [INTERCHROMOSOMAL[chr10--chr12]],translocation/5'-5' NRP1 NA TWF1 NA NA NA NA NA NA +9:132198609 9:110875722 NTNG2--LPAR1 BS_A0DYVX9J ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:21.12Mb]],inversion NTNG2 NA LPAR1 NA NA Oncogene NA NA NA +10:3138904 12:23113569 PITRM1--AC084816.1 BS_A0DYVX9J ARRIBA frameshift 18 4 high [INTERCHROMOSOMAL[chr10--chr12]],translocation/5'-5' PITRM1 NA AC084816.1 NA NA NA NA NA NA +10:3138313 12:23124527 PITRM1--AC084816.1 BS_A0DYVX9J ARRIBA other 4 0 low [INTERCHROMOSOMAL[chr10--chr12]],translocation PITRM1 NA AC084816.1 NA NA NA NA NA NA +10:3138904 12:23113569 PITRM1--AC087258.1 BS_A0DYVX9J ARRIBA frameshift 18 3 high [INTERCHROMOSOMAL[chr10--chr12]],translocation/5'-5' PITRM1 NA AC087258.1 NA NA NA NA NA NA +10:3138313 12:23124527 PITRM1--AC087258.1 BS_A0DYVX9J ARRIBA other 4 0 low [INTERCHROMOSOMAL[chr10--chr12]],translocation PITRM1 NA AC087258.1 NA NA NA NA NA NA +12:56221760 12:4906773 RNF41--GALNT8(54846)/AC005906.2(3094) BS_A0DYVX9J ARRIBA other 23 6 high [],deletion RNF41 NA GALNT8 AC005906.2 NA NA NA NA NA +12:56221760 12:4912198 RNF41--KCNA1 BS_A0DYVX9J ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr12:51.28Mb]],deletion/5'-5' RNF41 NA KCNA1 NA NA NA NA NA NA +12:56221760 10:34348115 RNF41--PARD3 BS_A0DYVX9J ARRIBA other 2 1 medium [INTERCHROMOSOMAL[chr12--chr10]],translocation RNF41 NA PARD3 NA NA NA NA NA NA +9:134429240 9:7046862 RXRA--KDM4C BS_A0DYVX9J ARRIBA frameshift 63 18 high [INTRACHROMOSOMAL[chr9:127.14Mb]],duplication RXRA NA KDM4C NA TranscriptionFactor Oncogene NA NA NA +9:134421805 9:7046862 RXRA--KDM4C BS_A0DYVX9J ARRIBA frameshift 7 6 high [INTRACHROMOSOMAL[chr9:127.14Mb]],duplication RXRA NA KDM4C NA TranscriptionFactor Oncogene NA NA NA +9:134429240 9:7103685 RXRA--KDM4C BS_A0DYVX9J ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr9:127.14Mb]],duplication RXRA NA KDM4C NA TranscriptionFactor Oncogene NA NA NA +9:134421805 9:7103685 RXRA--KDM4C BS_A0DYVX9J ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:127.14Mb]],duplication RXRA NA KDM4C NA TranscriptionFactor Oncogene NA NA NA +9:134429240 9:7046862 RXRA--KDM4C BS_A0DYVX9J STARFUSION frameshift 64 19 NA [INTRACHROMOSOMAL[chr9:127.14Mb]] RXRA NA KDM4C NA TranscriptionFactor Oncogene NA NA NA +10:50622489 10:45441375 SGMS1--ALOX5 BS_A0DYVX9J ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:4.86Mb]],deletion/5'-5' SGMS1 NA ALOX5 NA TumorSuppressorGene, Oncogene Oncogene NA NA NA +9:37899829 9:134025845 SLC25A51--LINC00094 BS_A0DYVX9J ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr9:96.12Mb]],inversion SLC25A51 NA LINC00094 NA NA NA NA NA NA +12:40105253 12:47474636 SLC2A13--ADI1P3(11015)/AC003686.1(10053) BS_A0DYVX9J ARRIBA frameshift 4 0 high [],duplication SLC2A13 NA ADI1P3 AC003686.1 NA NA NA NA NA +12:40105253 12:47448296 SLC2A13--LINC02156(28117)/ADI1P3(14791) BS_A0DYVX9J ARRIBA frameshift 2 1 high [],duplication SLC2A13 NA LINC02156 ADI1P3 NA NA NA NA NA +12:4331317 10:3256557 TIGAR--AL451164.1 BS_A0DYVX9J ARRIBA frameshift 17 1 high [INTERCHROMOSOMAL[chr12--chr10]],translocation TIGAR NA AL451164.1 NA NA NA NA NA NA +12:4331317 10:3244659 TIGAR--AL451164.1 BS_A0DYVX9J ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr12--chr10]],translocation TIGAR NA AL451164.1 NA NA NA NA NA NA +12:4331317 10:3240502 TIGAR--AL451164.1 BS_A0DYVX9J ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr10]],translocation TIGAR NA AL451164.1 NA NA NA NA NA NA +12:4331317 10:3256557 TIGAR--AL451164.1 BS_A0DYVX9J STARFUSION other 53 19 NA [INTERCHROMOSOMAL[chr12--chr10]] TIGAR NA AL451164.1 NA NA NA NA NA NA +12:4334846 10:3259570 TIGAR--AL451164.1(2360)/AL139280.1(6433) BS_A0DYVX9J ARRIBA other 46 8 medium [],translocation TIGAR NA AL451164.1 AL139280.1 NA NA NA NA NA +9:100550160 9:131369505 TMEFF1--PLPP7(60243)/PRRC2B(24588) BS_A0DYVX9J ARRIBA frameshift 3 1 high [],deletion TMEFF1 NA PLPP7 PRRC2B TumorSuppressorGene NA NA NA NA +9:100550160 9:131430090 TMEFF1--PRRC2B BS_A0DYVX9J ARRIBA frameshift 126 23 high [INTRACHROMOSOMAL[chr9:30.82Mb]],deletion TMEFF1 NA PRRC2B NA TumorSuppressorGene NA NA NA NA +9:100550160 9:131432617 TMEFF1--PRRC2B BS_A0DYVX9J ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr9:30.82Mb]],deletion TMEFF1 NA PRRC2B NA TumorSuppressorGene NA NA NA NA +9:100509134 9:131432617 TMEFF1--PRRC2B BS_A0DYVX9J ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:30.82Mb]],deletion TMEFF1 NA PRRC2B NA TumorSuppressorGene NA NA NA NA +9:100473740 9:131430090 TMEFF1--PRRC2B BS_A0DYVX9J ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:30.82Mb]],deletion TMEFF1 NA PRRC2B NA TumorSuppressorGene NA NA NA NA +9:100550160 9:131430090 TMEFF1--PRRC2B BS_A0DYVX9J STARFUSION other 147 33 NA [INTRACHROMOSOMAL[chr9:30.82Mb]] TMEFF1 NA PRRC2B NA TumorSuppressorGene NA NA NA NA +9:114637070 9:137678596 TMEM268--AL590627.2 BS_A0DYVX9J ARRIBA frameshift 17 5 high [INTRACHROMOSOMAL[chr9:22.97Mb]],inversion/3'-3' TMEM268 NA AL590627.2 NA NA NA NA NA NA +9:114633899 9:69856555 TMEM268--C9orf135 BS_A0DYVX9J ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr9:44.70Mb]],inversion/3'-3' TMEM268 NA C9orf135 NA NA NA NA NA NA +9:114637070 9:137678596 TMEM268--EHMT1 BS_A0DYVX9J ARRIBA frameshift 17 5 high [INTRACHROMOSOMAL[chr9:22.97Mb]],inversion/3'-3' TMEM268 NA EHMT1 NA NA Oncogene NA NA NA +12:43796976 10:33211268 TWF1--AL121748.2 BS_A0DYVX9J ARRIBA frameshift 3 2 high [INTERCHROMOSOMAL[chr12--chr10]],translocation TWF1 NA AL121748.2 NA NA NA NA NA NA +12:43796976 10:33213238 TWF1--AL121748.2 BS_A0DYVX9J ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr10]],translocation TWF1 NA AL121748.2 NA NA NA NA NA NA +12:830160 10:906371 WNK1--LARP4B BS_A0DYVX9J ARRIBA frameshift 214 26 high [INTERCHROMOSOMAL[chr12--chr10]],translocation/5'-5' WNK1 NA LARP4B NA Kinase, Kinase CosmicCensus NA NA NA +12:827262 10:51907507 WNK1--PRKG1 BS_A0DYVX9J ARRIBA frameshift 3 1 medium [INTERCHROMOSOMAL[chr12--chr10]],translocation WNK1 NA PRKG1 NA Kinase, Kinase Kinase NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_A13BMEF5 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_A13BMEF5 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_A13BMEF5 ARRIBA other 9 2 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_A13BMEF5 ARRIBA in-frame 7 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +6:118813102 6:118856545 MCM9--MCM9 BS_A13BMEF5 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_A13BMEF5 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:19405370 7:19299328 AC007091.1--AC003986.1(153075)/AC007091.1(54206) BS_A14Z8BBK ARRIBA other 2 0 medium [],duplication AC007091.1 NA AC003986.1 AC007091.1 NA NA NA NA NA +7:19609322 7:19576287 AC007091.1(30716)/TWISTNB(86140)--AC007091.1 BS_A14Z8BBK ARRIBA other 8 0 medium [],duplication AC007091.1 TWISTNB AC007091.1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_A14Z8BBK ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_A14Z8BBK ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_A14Z8BBK ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_A14Z8BBK ARRIBA other 10 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +14:59456438 14:59551436 GPR135--CCDC175 BS_A14Z8BBK ARRIBA other 3 0 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59543454 GPR135--CCDC175 BS_A14Z8BBK ARRIBA other 2 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59551436 GPR135--CCDC175 BS_A14Z8BBK ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59540746 GPR135--CCDC175 BS_A14Z8BBK ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59538840 GPR135--CCDC175 BS_A14Z8BBK ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_A14Z8BBK ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_A14Z8BBK ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +1:220232799 1:2430338 RAB3GAP2--PLCH2 BS_A14Z8BBK ARRIBA in-frame 11 0 high [INTRACHROMOSOMAL[chr1:217.64Mb]],inversion RAB3GAP2 NA PLCH2 NA NA Oncogene NA NA NA +1:220232799 1:2430338 RAB3GAP2--PLCH2 BS_A14Z8BBK STARFUSION other 12 0 NA [INTRACHROMOSOMAL[chr1:217.64Mb]] RAB3GAP2 NA PLCH2 NA NA Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_A14Z8BBK ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:104958088 12:105068884 SLC41A2--ALDH1L2 BS_A14Z8BBK ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_REARRANGEMENT:-:[61040]],duplication SLC41A2 NA ALDH1L2 NA NA NA NA NA NA +12:104958190 12:105068884 SLC41A2--ALDH1L2 BS_A14Z8BBK ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_REARRANGEMENT:-:[61040]],duplication SLC41A2 NA ALDH1L2 NA NA NA NA NA NA +11:126264096 7:81974552 SRPRA--CACNA2D1 BS_A14Z8BBK ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr11--chr7]],translocation SRPRA NA CACNA2D1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_A1VEGWTR ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_A1VEGWTR ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_A1VEGWTR ARRIBA other 17 4 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_A1VEGWTR ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:22127563 9:22046751 CDKN2B-AS1(6466)/AL157937.1(76427)--CDKN2B-AS1 BS_A1VEGWTR ARRIBA other 2 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_A1VEGWTR ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:178859489 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_A1VEGWTR ARRIBA other 4 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178859489 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_A1VEGWTR ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_A1VEGWTR ARRIBA in-frame 14 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +8:89596419 8:89629251 KRT8P4(181348)/AF117829.1(12990)--AF117829.1 BS_A1VEGWTR ARRIBA other 1 0 low [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_A1VEGWTR ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +15:92128489 15:92094881 SLCO3A1--SLCO3A1 BS_A1VEGWTR ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.32Mb]],duplication/non-canonical_splicing SLCO3A1 NA SLCO3A1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_A3QZB9Y2 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_A3QZB9Y2 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:49586855 6:52995796 AL139099.5--7SK BS_A3QZB9Y2 STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +14:49586867 6:52995735 AL139099.5--7SK BS_A3QZB9Y2 STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +1:53268014 1:53241847 AL355483.4--AL606760.1 BS_A3QZB9Y2 ARRIBA other 14 1 high [INTRACHROMOSOMAL[chr1:0.03Mb],LOCAL_REARRANGEMENT:+:[25152]],duplication AL355483.4 NA AL606760.1 NA NA NA NA NA NA +18:65862917 18:65843812 CDH7--CDH7 BS_A3QZB9Y2 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA +15:40472470 12:79678820 CHST14--PAWR BS_A3QZB9Y2 ARRIBA frameshift 14 0 medium [INTERCHROMOSOMAL[chr15--chr12]],translocation/5'-5' CHST14 NA PAWR NA NA TumorSuppressorGene, Oncogene NA NA NA +6:64590223 6:64593309 EYS--EYS BS_A3QZB9Y2 ARRIBA frameshift 51 5 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_A3QZB9Y2 ARRIBA frameshift 4 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +22:25192668 1:53238080 KIAA1671--MAGOH BS_A3QZB9Y2 ARRIBA other 25 5 medium [INTERCHROMOSOMAL[chr22--chr1]],translocation/5'-5' KIAA1671 NA MAGOH NA NA NA NA NA NA +13:75761038 13:78274253 LMO7--RNF219-AS1 BS_A3QZB9Y2 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr13:2.06Mb]],deletion LMO7 NA RNF219-AS1 NA Oncogene NA NA NA NA +13:75761038 13:78605301 LMO7--RNF219-AS1 BS_A3QZB9Y2 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr13:2.06Mb]],deletion LMO7 NA RNF219-AS1 NA Oncogene NA NA NA NA +14:46920012 14:47035304 MDGA2--MDGA2 BS_A3QZB9Y2 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +10:94032252 10:94017339 PLCE1--PIPSL(55799)/PLCE1(13473) BS_A3QZB9Y2 ARRIBA frameshift 3 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +14:49586859 6:52995796 RN7SL1--7SK BS_A3QZB9Y2 STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +14:49586866 6:52995736 RN7SL1--7SK BS_A3QZB9Y2 STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_A3QZB9Y2 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +17:9378552 22:32586484 STX8--SYN3 BS_A3QZB9Y2 ARRIBA frameshift 2 2 high [INTERCHROMOSOMAL[chr17--chr22]],translocation/5'-5' STX8 NA SYN3 NA NA NA NA NA NA +1:155688071 1:156623467 YY1AP1--HAPLN2 BS_A3QZB9Y2 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.93Mb]],inversion YY1AP1 NA HAPLN2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_A46RDWGM ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_A46RDWGM ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_A46RDWGM ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_A7MC2KR2 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_A7MC2KR2 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_A7MC2KR2 STARFUSION other 15 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +14:20343149 14:49586590 AL355075.4--AL139099.5 BS_A7MC2KR2 STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA AL139099.5 NA NA NA NA NA NA +14:20343154 14:49586592 AL355075.4--RN7SL1 BS_A7MC2KR2 STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA RN7SL1 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_A7MC2KR2 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +2:77518318 2:77522069 LRRTM4--LRRTM4 BS_A7MC2KR2 ARRIBA frameshift 2 1 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.85Mb]],duplication LRRTM4 NA LRRTM4 NA NA NA NA NA NA +14:49862556 6:52995635 RN7SL2--7SK BS_A7MC2KR2 STARFUSION other 4 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:20343149 14:49586590 RPPH1--AL139099.5 BS_A7MC2KR2 STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA AL139099.5 NA NA NA NA NA NA +14:20343149 14:49586590 RPPH1--RN7SL1 BS_A7MC2KR2 STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_A7MC2KR2 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:50553179 8:50530177 SNTG1--SNTG1 BS_A7MC2KR2 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_A7Q8G0Y1 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_A7Q8G0Y1 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_A7Q8G0Y1 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:52610541 4:54446426 USP46--AC098868.1 BS_A7Q8G0Y1 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr4:1.78Mb]],duplication USP46 NA AC098868.1 NA NA NA NA NA NA +4:52610541 4:54476632 USP46--AC098868.1(29909)/LINC02260(126579) BS_A7Q8G0Y1 ARRIBA frameshift 5 0 medium [],duplication USP46 NA AC098868.1 LINC02260 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_A87NPZAP ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_A87NPZAP ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:63970579 17:19190172 RNU6-45P--SNORD3C BS_A87NPZAP ARRIBA other 8 0 low [INTERCHROMOSOMAL[chr11--chr17]],translocation RNU6-45P NA SNORD3C NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_A87NPZAP ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_A87NPZAP ARRIBA other 5 2 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ABYF92Z9 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ABYF92Z9 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_ABYF92Z9 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +3:178801793 3:178965496 KCNMB2-AS1--KCNMB2-AS1(105091)/ZMAT3(51727) BS_ABYF92Z9 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_ABYF92Z9 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +10:94171496 10:94030683 PLCE1--PIPSL(69143)/PLCE1(129) BS_ABYF92Z9 ARRIBA frameshift 3 0 medium [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +13:37571369 20:23633999 POSTN--CST3 BS_ABYF92Z9 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr13--chr20]],translocation POSTN NA CST3 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ABYF92Z9 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_AD4JPN9Q ARRIBA other 46 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_AD4JPN9Q ARRIBA other 46 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_AD4JPN9Q ARRIBA other 10 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +1:56422678 8:47737462 AC119674.1--CEBPD BS_AD4JPN9Q ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr1--chr8]],translocation AC119674.1 NA CEBPD NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +5:65451475 5:65471142 ADAMTS6--ADAMTS6 BS_AD4JPN9Q ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.33Mb]],duplication/non-canonical_splicing ADAMTS6 NA ADAMTS6 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_AD4JPN9Q ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +5:61755944 5:61686883 C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_AD4JPN9Q ARRIBA other 4 0 medium [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_AD4JPN9Q ARRIBA in-frame 17 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_AD4JPN9Q ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_AD4JPN9Q ARRIBA frameshift 8 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_AD4JPN9Q ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_AD4JPN9Q ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +2:8287338 2:8392968 LINC00299--LINC00299(9347)/AC011747.2(150624) BS_AD4JPN9Q ARRIBA other 2 0 low [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_AD4JPN9Q ARRIBA other 46 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:99743695 9:33700132 AC008837.2(148398)/AC092284.1(204600)--AL356489.2 BS_AG3D3435 ARRIBA other 2 0 medium [],translocation AC008837.2 AC092284.1 AL356489.2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_AG3D3435 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_AG3D3435 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_AG3D3435 ARRIBA other 5 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +15:93657737 15:93530237 AC110023.1--AC091078.1 BS_AG3D3435 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_AG3D3435 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_AG3D3435 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_AG3D3435 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +14:36215058 14:36164120 AL162511.1--LINC00609 BS_AG3D3435 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +10:27907663 10:27971313 ARMC4--ARMC4 BS_AG3D3435 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.19Mb]],duplication/non-canonical_splicing ARMC4 NA ARMC4 NA NA NA NA NA NA +7:137521866 7:137609609 DGKI--DGKI BS_AG3D3435 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +2:84727902 2:84703395 DNAH6--DNAH6 BS_AG3D3435 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.30Mb]],duplication/non-canonical_splicing DNAH6 NA DNAH6 NA NA NA NA NA NA +20:54610523 20:54554933 DOK5--DOK5 BS_AG3D3435 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA +6:138889031 6:138842979 ECT2L--ECT2L BS_AG3D3435 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA +14:89870643 14:89932627 EFCAB11--EFCAB11 BS_AG3D3435 ARRIBA frameshift 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_AG3D3435 STARFUSION other 9 14 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_AG3D3435 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_AG3D3435 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16323036 4:16256257 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_AG3D3435 ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_AG3D3435 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_AG4H9S3J ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_AG4H9S3J ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_AG4H9S3J ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_AG4H9S3J ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_AG4H9S3J ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_AG4H9S3J ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_AG4H9S3J ARRIBA in-frame 13 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +7:43501322 7:43492075 HECW1--HECW1 BS_AG4H9S3J ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_AG4H9S3J ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_AG4H9S3J ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_AG4H9S3J ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_AG4H9S3J ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_AG4H9S3J ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_AG4H9S3J ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_AG4H9S3J ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_AG4H9S3J ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_AG4H9S3J ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:97157818 10:97164890 SLIT1--SLIT1 BS_AG4H9S3J ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.19Mb]],duplication/non-canonical_splicing SLIT1 NA SLIT1 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_AGS1HHGF ARRIBA other 8 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +3:167140689 3:167282495 AC092965.1(74369)/ZBBX(99598)--ZBBX BS_AGS1HHGF ARRIBA other 3 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_AGS1HHGF ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_AGS1HHGF ARRIBA in-frame 12 4 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +17:6892075 17:6855235 ALOX12P2--ALOX12P2 BS_AGS1HHGF ARRIBA other 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr17:0.10Mb]],duplication ALOX12P2 NA ALOX12P2 NA NA NA NA NA NA +3:57357176 3:57363786 DNAH12--DNAH12 BS_AGS1HHGF ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +1:15369502 1:15367463 FHAD1--FHAD1 BS_AGS1HHGF ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_AGS1HHGF ARRIBA frameshift 4 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +3:178801793 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_AGS1HHGF ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:153927261 3:154030379 LINC02006--ARHGEF26-AS1 BS_AGS1HHGF ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr3:0.04Mb],LOCAL_REARRANGEMENT:-:[44215]],duplication LINC02006 NA ARHGEF26-AS1 NA NA NA NA NA NA +3:153927261 3:154030376 LINC02006--ARHGEF26-AS1 BS_AGS1HHGF ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr3:0.04Mb],LOCAL_REARRANGEMENT:-:[44215]],duplication LINC02006 NA ARHGEF26-AS1 NA NA NA NA NA NA +3:154004631 3:154030379 LINC02006(24445)/U8(2736)--ARHGEF26-AS1 BS_AGS1HHGF ARRIBA other 2 0 medium [],duplication LINC02006 U8 ARHGEF26-AS1 NA NA NA NA NA NA +14:60019260 14:59997656 LRRC9--LRRC9 BS_AGS1HHGF ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_AGS1HHGF ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +3:73521643 13:30463694 PDZRN3--HMGB1 BS_AGS1HHGF ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr3--chr13]],translocation/3'-3' PDZRN3 NA HMGB1 NA NA Oncogene NA NA NA +14:49862563 9:35658003 RN7SL2--RMRP BS_AGS1HHGF STARFUSION other 5 9 NA [INTERCHROMOSOMAL[chr14--chr9]] RN7SL2 NA RMRP NA NA Oncogene NA NA NA +5:110387266 5:110424916 TMEM232--TMEM232 BS_AGS1HHGF ARRIBA other 6 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA +9:70827847 9:70864511 TRPM3--TRPM3 BS_AGS1HHGF ARRIBA frameshift 39 3 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA +6:52995909 14:49862761 7SK--RN7SL2 BS_AGTPCRR4 STARFUSION other 5 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_AGTPCRR4 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_AGTPCRR4 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:7804692 5:7784365 ADCY2--ADCY2 BS_AGTPCRR4 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_AGTPCRR4 ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_AGTPCRR4 ARRIBA other 7 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_AGTPCRR4 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_AGTPCRR4 ARRIBA other 7 0 low [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +13:52123838 12:95842555 NEK5--AC090001.1 BS_AGTPCRR4 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr13--chr12]],translocation NEK5 NA AC090001.1 NA Kinase, Kinase NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_AGTPCRR4 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +6:88769774 6:88844521 RNGTT--RNGTT BS_AGTPCRR4 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.35Mb]],duplication/non-canonical_splicing RNGTT NA RNGTT NA NA NA NA NA NA +10:88631232 10:88602576 RPL7P34(12298)/LIPF(33209)--LIPJ BS_AGTPCRR4 ARRIBA other 2 0 low [],duplication RPL7P34 LIPF LIPJ NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_AGTPCRR4 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:110387266 5:110424916 TMEM232--TMEM232 BS_AGTPCRR4 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA +19:37691521 19:37711692 ZNF781--ZNF607 BS_AGTPCRR4 ARRIBA other 1 1 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:-:[4041]],duplication ZNF781 NA ZNF607 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_AHEFXG7W ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_AHEFXG7W ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_AHEFXG7W ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +2:23562481 2:16062885 KLHL29--AC010145.1 BS_AHEFXG7W ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr2:7.32Mb]],inversion KLHL29 NA AC010145.1 NA NA NA NA NA NA +2:33187080 2:15673403 LTBP1--AC008278.1 BS_AHEFXG7W ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr2:17.27Mb]],duplication/5'-5' LTBP1 NA AC008278.1 NA NA NA NA NA NA +2:33187080 2:15641035 LTBP1--DDX1(9924)/AC008278.1(27649) BS_AHEFXG7W ARRIBA frameshift 53 1 high [],duplication LTBP1 NA DDX1 AC008278.1 NA Oncogene NA NA NA +2:33187080 2:15701229 LTBP1--LINC01804 BS_AHEFXG7W ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr2:17.20Mb]],duplication LTBP1 NA LINC01804 NA NA NA NA NA NA +2:33187080 2:15700390 LTBP1--LINC01804 BS_AHEFXG7W ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr2:17.20Mb]],duplication LTBP1 NA LINC01804 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_AHEFXG7W ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_AJ6X83G5 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_AJ6X83G5 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90763305 ADGRV1--ADGRV1 BS_AJ6X83G5 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_AJ6X83G5 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_AJ6X83G5 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_AJ6X83G5 ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211107377 AL590132.1--KCNH1 BS_AJ6X83G5 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_AJ6X83G5 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_AJ6X83G5 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_AJ6X83G5 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +18:79307234 18:79193183 ATP9B--ATP9B BS_AJ6X83G5 ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +1:33646648 1:33652461 CSMD2--CSMD2 BS_AJ6X83G5 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr1:0.65Mb]],duplication/non-canonical_splicing CSMD2 NA CSMD2 NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_AJ6X83G5 ARRIBA frameshift 7 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_AJ6X83G5 ARRIBA in-frame 42 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +5:79313336 5:79335219 JMY--JMY(8004)/HOMER1(37417) BS_AJ6X83G5 ARRIBA other 1 1 medium [],duplication JMY NA JMY HOMER1 NA NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_AJ6X83G5 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_AJ6X83G5 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_AJ6X83G5 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211107377 KCNH1--AL590132.1 BS_AJ6X83G5 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_AJ6X83G5 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_AJ6X83G5 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_AJ6X83G5 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_AJ6X83G5 ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_AJ6X83G5 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210797508 1:211019256 KCNH1--AL590132.1 BS_AJ6X83G5 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_AJ6X83G5 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +1:196373140 1:196479238 KCNT2--KCNT2 BS_AJ6X83G5 ARRIBA frameshift 10 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_AJ6X83G5 ARRIBA other 9 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_AJ6X83G5 ARRIBA other 3 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_AJ6X83G5 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_AJ6X83G5 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_AJ6X83G5 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_AJ6X83G5 ARRIBA other 4 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_AKRHBPNZ ARRIBA other 44 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_AKRHBPNZ ARRIBA other 44 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_AKRHBPNZ ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_AKRHBPNZ ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_AKRHBPNZ ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +10:121483698 10:116948997 FGFR2--SHTN1 BS_AKRHBPNZ ARRIBA in-frame 26 2 high [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr10:4.35Mb]],deletion FGFR2 NA SHTN1 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus NA NA NA +10:121483698 10:116948997 FGFR2--SHTN1 BS_AKRHBPNZ STARFUSION in-frame 32 3 NA [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr10:4.35Mb]] FGFR2 NA SHTN1 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_AKRHBPNZ ARRIBA frameshift 4 0 medium [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_AKRHBPNZ ARRIBA frameshift 3 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +3:178801793 3:178965496 KCNMB2-AS1--KCNMB2-AS1(105091)/ZMAT3(51727) BS_AKRHBPNZ ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178748404 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_AKRHBPNZ ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_AKRHBPNZ ARRIBA other 5 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_AKRHBPNZ ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +11:86823593 11:86788896 PRSS23--AP003059.2(23631)/PRSS23(2163) BS_AKRHBPNZ ARRIBA frameshift 3 0 medium [],duplication PRSS23 NA AP003059.2 PRSS23 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_AKRHBPNZ ARRIBA other 44 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +13:52397232 13:52427219 THSD1--VPS36 BS_AKRHBPNZ ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr13:0.01Mb],LOCAL_REARRANGEMENT:-:[6108]],duplication THSD1 NA VPS36 NA TumorSuppressorGene NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_AKRHBPNZ ARRIBA other 3 1 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_AM70R8RG ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_AM70R8RG ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:23331570 2:23090848 AC012506.1--AC018467.1 BS_AM70R8RG STARFUSION other 20 2 NA [INTRACHROMOSOMAL[chr2:0.13Mb]] AC012506.1 NA AC018467.1 NA NA NA NA NA NA +4:79606956 4:79493152 AC092542.1(9783)/LINC02469(56805)--LINC00989 BS_AM70R8RG ARRIBA other 3 1 high [],duplication AC092542.1 LINC02469 LINC00989 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_AM70R8RG ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:114469299 6:114371592 HDAC2-AS2--HDAC2-AS2 BS_AM70R8RG ARRIBA other 23 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_AM70R8RG ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +16:77191633 16:77172991 MON1B--AC106733.1(67694)/MON1B(17844) BS_AM70R8RG ARRIBA frameshift 8 0 high [],duplication MON1B NA AC106733.1 MON1B NA NA NA NA NA +15:88126271 15:88137561 NTRK3--NTRK3 BS_AM70R8RG ARRIBA frameshift 28 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.40Mb]],duplication/non-canonical_splicing NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_AM70R8RG ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19782386 13:19835689 PSPC1--ZMYM5 BS_AM70R8RG ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_AM70R8RG ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_AMQGM1V9 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_AMQGM1V9 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_AMQGM1V9 ARRIBA other 8 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_AMQGM1V9 ARRIBA other 12 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +21:15511119 21:15513934 AJ009632.2--AJ009632.2 BS_AMQGM1V9 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.26Mb]],duplication/non-canonical_splicing AJ009632.2 NA AJ009632.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_AMQGM1V9 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:38462233 9:38456118 AL390726.6--AL390726.6 BS_AMQGM1V9 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing AL390726.6 NA AL390726.6 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_AMQGM1V9 ARRIBA frameshift 13 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_AMQGM1V9 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_AMQGM1V9 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_AMQGM1V9 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211103496 1:211107377 AL590132.1--KCNH1 BS_AMQGM1V9 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_AMQGM1V9 ARRIBA frameshift 9 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_AMQGM1V9 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_AMQGM1V9 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_AMQGM1V9 ARRIBA other 5 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +3:37399659 3:37379042 C3orf35--GOLGA4(12291)/C3orf35(7227) BS_AMQGM1V9 ARRIBA other 1 0 low [],duplication C3orf35 NA GOLGA4 C3orf35 NA NA NA NA NA +10:12998338 10:13074100 CCDC3--CCDC3 BS_AMQGM1V9 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_AMQGM1V9 ARRIBA in-frame 19 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +1:58506060 1:58539310 DAB1--OMA1 BS_AMQGM1V9 ARRIBA other 8 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58534331 DAB1--OMA1 BS_AMQGM1V9 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:57649592 1:58541609 DAB1--OMA1 BS_AMQGM1V9 ARRIBA other 1 3 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58253807 1:58539310 DAB1--OMA1 BS_AMQGM1V9 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58527261 1:58539310 DAB1--OMA1 BS_AMQGM1V9 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58536741 DAB1--OMA1 BS_AMQGM1V9 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +7:137463489 7:137609609 DGKI--DGKI BS_AMQGM1V9 ARRIBA frameshift 16 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_AMQGM1V9 ARRIBA in-frame 109 12 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_AMQGM1V9 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_AMQGM1V9 ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_AMQGM1V9 ARRIBA frameshift 13 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_AMQGM1V9 ARRIBA frameshift 9 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_AMQGM1V9 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_AMQGM1V9 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_AMQGM1V9 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211103496 1:211107377 KCNH1--AL590132.1 BS_AMQGM1V9 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_AMQGM1V9 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_AMQGM1V9 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_AMQGM1V9 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_AMQGM1V9 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_AMQGM1V9 ARRIBA frameshift 14 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +1:196373140 1:196479238 KCNT2--KCNT2 BS_AMQGM1V9 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_AMQGM1V9 ARRIBA frameshift 6 1 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_AMQGM1V9 ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +6:132134483 6:132090446 LINC01013--AL021408.1 BS_AMQGM1V9 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_AMQGM1V9 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_AMQGM1V9 ARRIBA other 6 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_AMQGM1V9 ARRIBA frameshift 9 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_AMQGM1V9 ARRIBA in-frame 18 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_AMQGM1V9 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +8:32029485 8:31844448 NRG1-IT1--NRG1 BS_AMQGM1V9 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:0.11Mb]],duplication NRG1-IT1 NA NRG1 NA NA CosmicCensus NA NA NA +6:165379194 6:165388453 PDE10A--PDE10A BS_AMQGM1V9 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA +17:6525356 17:6600458 PITPNM3--KIAA0753 BS_AMQGM1V9 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_AMQGM1V9 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_AMQGM1V9 ARRIBA in-frame 46 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +4:2123502 4:2174751 POLN--POLN BS_AMQGM1V9 ARRIBA frameshift 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr4:0.17Mb]],duplication POLN NA POLN NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_AMQGM1V9 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_AMQGM1V9 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:158617205 4:158607972 RXFP1--RXFP1 BS_AMQGM1V9 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_AMQGM1V9 ARRIBA other 7 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +4:16323036 4:16288884 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_AMQGM1V9 ARRIBA other 4 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:134713200 2:134869041 TMEM163--CCNT2-AS1 BS_AMQGM1V9 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA +2:134550570 2:134869041 TMEM163--CCNT2-AS1 BS_AMQGM1V9 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_AMZ70B6F ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_AMZ70B6F ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_AMZ70B6F ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +5:91102340 5:90781430 ADGRV1--ADGRV1 BS_AMZ70B6F ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_AMZ70B6F ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +12:24878530 12:24894475 BCAT1--BCAT1 BS_AMZ70B6F ARRIBA in-frame 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.14Mb]],duplication/non-canonical_splicing BCAT1 NA BCAT1 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_AMZ70B6F ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_AMZ70B6F ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_AMZ70B6F ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_AMZ70B6F ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_AMZ70B6F ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_AMZ70B6F ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_AMZ70B6F ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_AMZ70B6F ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +15:88126271 15:88137561 NTRK3--NTRK3 BS_AMZ70B6F ARRIBA frameshift 17 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.40Mb]],duplication/non-canonical_splicing NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +7:39086031 7:38986246 POU6F2--POU6F2 BS_AMZ70B6F ARRIBA frameshift 19 2 high [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_AMZ70B6F ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_AMZ70B6F ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_AMZ70B6F ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_AMZ70B6F ARRIBA other 26 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +10:131260259 10:131309299 TCERG1L--TCERG1L BS_AMZ70B6F ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA +X:146955175 X:146916390 Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_AMZ70B6F ARRIBA other 14 0 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_AP0SZ364 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_AP0SZ364 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_AP0SZ364 ARRIBA other 7 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_AP0SZ364 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +2:229155818 3:12599808 PID1--RAF1 BS_AP0SZ364 ARRIBA in-frame 12 2 high [INTERCHROMOSOMAL[chr2--chr3]],translocation PID1 NA RAF1 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:229155818 3:12599808 PID1--RAF1 BS_AP0SZ364 STARFUSION in-frame 12 2 NA [INTERCHROMOSOMAL[chr2--chr3]] PID1 NA RAF1 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_AP0SZ364 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:210032924 2:210009657 AC007038.1--RPE BS_ARBQDTT5 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA +2:210035244 2:210015973 AC007038.1--RPE BS_ARBQDTT5 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ARBQDTT5 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ARBQDTT5 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:153376725 11:27378768 AC078788.1(2539)/AC078788.2(106)--LGR4 BS_ARBQDTT5 ARRIBA other 2 0 medium [],translocation AC078788.1 AC078788.2 LGR4 NA NA NA NA NA NA +14:100940450 14:100913432 MEG8--MEG8 BS_ARBQDTT5 ARRIBA other 9 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ARBQDTT5 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ARFQ1WG3 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ARFQ1WG3 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_ARFQ1WG3 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_ARFQ1WG3 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_ARFQ1WG3 ARRIBA other 24 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_ARFQ1WG3 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_ARFQ1WG3 ARRIBA frameshift 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_ARFQ1WG3 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ARFQ1WG3 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:101334504 12:101270065 UTP20--AC079953.1(41189)/UTP20(10044) BS_ARFQ1WG3 ARRIBA frameshift 2 1 high [],duplication UTP20 NA AC079953.1 UTP20 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_AVYNZHSB ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_AVYNZHSB ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:49586759 14:20343398 AL139099.5--AL355075.4 BS_AVYNZHSB STARFUSION other 3 8 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586758 14:20343402 AL139099.5--RPPH1 BS_AVYNZHSB STARFUSION other 3 8 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +13:19751271 13:19835689 PSPC1--ZMYM5 BS_AVYNZHSB ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_AVYNZHSB ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +14:49586754 14:20343400 RN7SL1--AL355075.4 BS_AVYNZHSB STARFUSION other 3 8 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586759 14:20343398 RN7SL1--RPPH1 BS_AVYNZHSB STARFUSION other 3 8 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_AVYNZHSB ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_AWH9757B ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_AWH9757B ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:138078767 8:66602523 AC079015.1--MYBL1 BS_AWH9757B ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:71.45Mb]],inversion AC079015.1 NA MYBL1 NA NA Oncogene, TranscriptionFactor, Oncogene NA NA NA +5:91102340 5:90781430 ADGRV1--ADGRV1 BS_AWH9757B ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_AWH9757B ARRIBA other 2 1 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_AWH9757B ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_AWH9757B ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_AWH9757B ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_AWH9757B ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_AWH9757B ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_AWH9757B ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_AWH9757B ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_AWH9757B ARRIBA frameshift 2 1 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +8:60781430 8:66602523 CHD7--MYBL1 BS_AWH9757B ARRIBA in-frame 41 2 high [INTRACHROMOSOMAL[chr8:5.69Mb]],inversion CHD7 NA MYBL1 NA NA Oncogene, TranscriptionFactor, Oncogene NA NA NA +8:60743097 8:66602523 CHD7--MYBL1 BS_AWH9757B ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr8:5.69Mb]],inversion CHD7 NA MYBL1 NA NA Oncogene, TranscriptionFactor, Oncogene NA NA NA +8:60781050 8:66602523 CHD7--MYBL1 BS_AWH9757B ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:5.69Mb]],inversion CHD7 NA MYBL1 NA NA Oncogene, TranscriptionFactor, Oncogene NA NA NA +8:60781430 8:66602523 CHD7--MYBL1 BS_AWH9757B STARFUSION in-frame 43 2 NA [INTRACHROMOSOMAL[chr8:5.69Mb]] CHD7 NA MYBL1 NA NA Oncogene, TranscriptionFactor, Oncogene NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_AWH9757B ARRIBA in-frame 19 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_AWH9757B ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_AWH9757B ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_AWH9757B ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_AWH9757B ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_AWH9757B ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_AWH9757B ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_AWH9757B ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_AWH9757B ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_AWH9757B ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_AWH9757B ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_AWH9757B ARRIBA other 2 0 medium [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +8:66585983 8:138071555 MYBL1--AC046195.1 BS_AWH9757B ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:71.20Mb]],inversion/5'-5' MYBL1 NA AC046195.1 NA Oncogene, TranscriptionFactor, Oncogene NA NA NA NA +8:66592440 8:138072901 MYBL1--AC079015.1 BS_AWH9757B ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr8:71.45Mb]],inversion MYBL1 NA AC079015.1 NA Oncogene, TranscriptionFactor, Oncogene NA NA NA NA +8:66612819 8:58769544 MYBL1--NSMAF(109700)/TOX(35874) BS_AWH9757B ARRIBA frameshift 4 0 high [],deletion MYBL1 NA NSMAF TOX Oncogene, TranscriptionFactor, Oncogene NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_AWH9757B ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_AWH9757B ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +19:17274185 15:95002318 AC010463.1--AC087633.2 BS_AZN38B7V ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr19--chr15]],translocation/5'-5' AC010463.1 NA AC087633.2 NA NA NA NA NA NA +19:3057679 19:40775644 AES--MIA BS_AZN38B7V ARRIBA frameshift 24 1 high [INTRACHROMOSOMAL[chr19:37.71Mb]],duplication/5'-5' AES NA MIA NA NA TumorSuppressorGene NA NA NA +19:3057679 19:40775644 AES--MIA-RAB4B BS_AZN38B7V ARRIBA frameshift 17 0 high [INTRACHROMOSOMAL[chr19:37.71Mb]],duplication/5'-5' AES NA MIA-RAB4B NA NA NA NA NA NA +19:3057679 19:40771182 AES--SNRPA(5793)/MIA(466)/MIA-RAB4B(466) BS_AZN38B7V ARRIBA frameshift 11 0 medium [],duplication AES NA SNRPA MIA NA NA NA TumorSuppressorGene NA +15:60382342 19:17276495 ANXA2--AC010463.1 BS_AZN38B7V ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr15--chr19]],translocation ANXA2 NA AC010463.1 NA NA NA NA NA NA +15:60382342 19:17276495 ANXA2--BABAM1 BS_AZN38B7V ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr15--chr19]],translocation ANXA2 NA BABAM1 NA NA NA NA NA NA +19:46937408 15:76574284 ARHGAP35--SCAPER BS_AZN38B7V ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr19--chr15]],translocation ARHGAP35 NA SCAPER NA TranscriptionFactor NA NA NA NA +19:17274185 15:95002318 BABAM1--AC087633.2 BS_AZN38B7V ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr19--chr15]],translocation/5'-5' BABAM1 NA AC087633.2 NA NA NA NA NA NA +15:78131165 19:31156417 CIB2--AC020912.1(8436)/LINC01791(11099) BS_AZN38B7V ARRIBA frameshift 2 0 medium [],translocation CIB2 NA AC020912.1 LINC01791 NA NA NA NA NA +15:78109235 19:31176384 CIB2--LINC01791 BS_AZN38B7V ARRIBA frameshift 6 0 medium [INTERCHROMOSOMAL[chr15--chr19]],translocation/5'-5' CIB2 NA LINC01791 NA NA NA NA NA NA +15:78109235 15:79364606 CIB2--TMED3 BS_AZN38B7V ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr15:1.18Mb]],inversion CIB2 NA TMED3 NA NA NA NA NA NA +19:3969674 19:30209636 DAPK3--AC008507.1(171480)/AC005597.1(10030) BS_AZN38B7V ARRIBA frameshift 15 0 high [],inversion DAPK3 NA AC008507.1 AC005597.1 Kinase, TumorSuppressorGene, Kinase NA NA NA NA +15:78264895 15:77458404 DNAJA4--HMG20A BS_AZN38B7V ARRIBA frameshift 29 2 high [INTRACHROMOSOMAL[chr15:0.78Mb]],duplication DNAJA4 NA HMG20A NA NA TranscriptionFactor NA NA NA +15:78264393 15:77458404 DNAJA4--HMG20A BS_AZN38B7V ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr15:0.78Mb]],duplication DNAJA4 NA HMG20A NA NA TranscriptionFactor NA NA NA +15:78264895 15:77458404 DNAJA4--HMG20A BS_AZN38B7V STARFUSION other 29 2 NA [INTRACHROMOSOMAL[chr15:0.78Mb]] DNAJA4 NA HMG20A NA NA TranscriptionFactor NA NA NA +9:137578625 7:100409544 DPH7--ZCWPW1 BS_AZN38B7V ARRIBA in-frame 7 0 high [INTERCHROMOSOMAL[chr9--chr7]],translocation DPH7 NA ZCWPW1 NA NA NA NA NA NA +9:137578625 7:100405093 DPH7--ZCWPW1 BS_AZN38B7V ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr9--chr7]],translocation DPH7 NA ZCWPW1 NA NA NA NA NA NA +19:32453276 15:72140619 DPY19L3--AC020779.2 BS_AZN38B7V ARRIBA frameshift 10 0 high [INTERCHROMOSOMAL[chr19--chr15]],translocation DPY19L3 NA AC020779.2 NA NA NA NA NA NA +19:32453276 15:72140619 DPY19L3--AC020779.2 BS_AZN38B7V STARFUSION other 10 0 NA [INTERCHROMOSOMAL[chr19--chr15]] DPY19L3 NA AC020779.2 NA NA NA NA NA NA +13:41060838 13:40119525 ELF1--LINC00598 BS_AZN38B7V ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr13:0.40Mb]],deletion ELF1 NA LINC00598 NA TranscriptionFactor NA NA NA NA +15:76231333 15:101527860 ETFA--AC090164.4 BS_AZN38B7V ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr15:25.22Mb]],duplication ETFA NA AC090164.4 NA NA NA NA NA NA +15:76231333 15:101513963 ETFA--PCSK6 BS_AZN38B7V ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr15:24.99Mb]],duplication ETFA NA PCSK6 NA NA NA NA NA NA +15:76231333 15:101443660 ETFA--PCSK6 BS_AZN38B7V ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr15:24.99Mb]],duplication ETFA NA PCSK6 NA NA NA NA NA NA +15:57661533 15:93761127 GCOM1--LINC01579 BS_AZN38B7V ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:36.00Mb]],inversion GCOM1 NA LINC01579 NA NA NA NA NA NA +15:57661533 15:93720965 GCOM1--LINC01579 BS_AZN38B7V ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:36.00Mb]],inversion GCOM1 NA LINC01579 NA NA NA NA NA NA +16:74491001 1:21256140 GLG1--ECE1 BS_AZN38B7V ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr16--chr1]],translocation GLG1 NA ECE1 NA NA NA NA NA NA +1:53923904 1:70886328 HSPB11--PTGER3 BS_AZN38B7V ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:16.91Mb]],duplication HSPB11 NA PTGER3 NA NA NA NA NA NA +19:18637137 15:76225929 KLHL26--ETFA BS_AZN38B7V ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr19--chr15]],translocation KLHL26 NA ETFA NA NA NA NA NA NA +19:18659784 15:76225929 KLHL26--ETFA BS_AZN38B7V ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr19--chr15]],translocation KLHL26 NA ETFA NA NA NA NA NA NA +19:2456670 15:87501806 LMNB2--AC020687.1 BS_AZN38B7V ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr19--chr15]],translocation LMNB2 NA AC020687.1 NA NA NA NA NA NA +15:57661533 15:93761127 MYZAP--LINC01579 BS_AZN38B7V ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:36.03Mb]],inversion MYZAP NA LINC01579 NA NA NA NA NA NA +15:57661533 15:93720965 MYZAP--LINC01579 BS_AZN38B7V ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:36.03Mb]],inversion MYZAP NA LINC01579 NA NA NA NA NA NA +19:44846613 15:90201458 NECTIN2--SEMA4B BS_AZN38B7V ARRIBA frameshift 17 0 high [INTERCHROMOSOMAL[chr19--chr15]],translocation NECTIN2 NA SEMA4B NA NA Oncogene NA NA NA +19:44846613 15:90217439 NECTIN2--SEMA4B BS_AZN38B7V ARRIBA in-frame 5 0 high [INTERCHROMOSOMAL[chr19--chr15]],translocation NECTIN2 NA SEMA4B NA NA Oncogene NA NA NA +19:44846613 15:90201458 NECTIN2--SEMA4B BS_AZN38B7V STARFUSION other 21 0 NA [INTERCHROMOSOMAL[chr19--chr15]] NECTIN2 NA SEMA4B NA NA Oncogene NA NA NA +15:90266398 19:9266328 NGRN--OR7E19P BS_AZN38B7V ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr15--chr19]],translocation NGRN NA OR7E19P NA NA NA NA NA NA +19:11359956 19:46235904 PLPPR2--AC006262.1 BS_AZN38B7V ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr19:34.84Mb]],inversion/3'-3' PLPPR2 NA AC006262.1 NA NA NA NA NA NA +19:11359956 19:46235904 PLPPR2--IGFL1(4661)/AC006262.4(13490) BS_AZN38B7V ARRIBA frameshift 9 0 high [],inversion PLPPR2 NA IGFL1 AC006262.4 NA NA NA NA NA +9:95506407 9:87010210 PTCH1--AL513318.2 BS_AZN38B7V ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr9:8.40Mb]],deletion PTCH1 NA AL513318.2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +9:95506407 9:86972354 PTCH1--GAS1RR BS_AZN38B7V ARRIBA frameshift 15 2 high [INTRACHROMOSOMAL[chr9:8.44Mb]],deletion/5'-5' PTCH1 NA GAS1RR NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +9:36037098 22:24567984 RECK--SNRPD3 BS_AZN38B7V ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr9--chr22]],translocation RECK NA SNRPD3 NA TumorSuppressorGene NA NA NA NA +2:224039099 2:222462513 SERPINE2--SGPP2 BS_AZN38B7V ARRIBA other 13 0 high [INTRACHROMOSOMAL[chr2:1.41Mb]],deletion/5'-5' SERPINE2 NA SGPP2 NA NA NA NA NA NA +22:24568176 9:37692638 SNRPD3--FRMPD1 BS_AZN38B7V ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr22--chr9]],translocation SNRPD3 NA FRMPD1 NA NA NA NA NA NA +15:101723093 19:33147645 TARSL2--WDR88 BS_AZN38B7V ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr15--chr19]],translocation TARSL2 NA WDR88 NA NA NA NA NA NA +19:1597438 19:46951688 UQCR11--ARHGAP35 BS_AZN38B7V ARRIBA other 21 0 medium [INTRACHROMOSOMAL[chr19:45.31Mb]],inversion UQCR11 NA ARHGAP35 NA NA TranscriptionFactor NA NA NA +1:35269085 1:46550002 ZMYM4--KNCN BS_AZN38B7V ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:11.12Mb]],inversion ZMYM4 NA KNCN NA NA NA NA NA NA +19:58142557 15:56373441 ZNF329--TEX9 BS_AZN38B7V ARRIBA other 7 0 high [INTERCHROMOSOMAL[chr19--chr15]],translocation ZNF329 NA TEX9 NA TranscriptionFactor NA NA NA NA +15:90001614 15:92005537 ZNF710--SLCO3A1 BS_AZN38B7V ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr15:1.77Mb]],inversion/3'-3' ZNF710 NA SLCO3A1 NA TranscriptionFactor NA NA NA NA +19:52374427 19:4186390 ZNF880--ANKRD24 BS_AZN38B7V ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr19:48.15Mb]],duplication ZNF880 NA ANKRD24 NA TranscriptionFactor NA NA NA NA +19:52374427 19:4186274 ZNF880--ANKRD24 BS_AZN38B7V ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr19:48.15Mb]],duplication ZNF880 NA ANKRD24 NA TranscriptionFactor NA NA NA NA +19:58055212 15:68086306 ZSCAN1(581)/ZNF135(4027)--PIAS1 BS_AZN38B7V ARRIBA other 4 0 high [],translocation ZSCAN1 ZNF135 PIAS1 NA TranscriptionFactor TumorSuppressorGene TranscriptionFactor NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_B0SVFK4P ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_B0SVFK4P ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_B0SVFK4P ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995909 14:20343396 7SK--AL355075.4 BS_B1C6GZ84 STARFUSION other 4 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL355075.4 NA NA NA NA NA NA +6:52995909 14:20343396 7SK--RPPH1 BS_B1C6GZ84 STARFUSION other 4 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RPPH1 NA NA NA NA NA NA +11:17427867 11:13607371 ABCC8--PTH(111190)/HMGN2P36(2992) BS_B1C6GZ84 ARRIBA frameshift 2 1 high [],deletion ABCC8 NA PTH HMGN2P36 NA Oncogene NA NA NA +4:7983264 4:42499335 ABLIM2--ATP8A1 BS_B1C6GZ84 ARRIBA frameshift 6 2 high [INTRACHROMOSOMAL[chr4:34.25Mb]],inversion/5'-5' ABLIM2 NA ATP8A1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_B1C6GZ84 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_B1C6GZ84 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:28741908 11:74037698 AC090833.1--C2CD3 BS_B1C6GZ84 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr11:44.95Mb]],inversion AC090833.1 NA C2CD3 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_B1C6GZ84 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_B1C6GZ84 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93557472 AC110023.1--AC091078.1 BS_B1C6GZ84 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +5:5200269 5:18274427 ADAMTS16--SNORD81(38231)/RN7SL58P(272885) BS_B1C6GZ84 ARRIBA frameshift 1 1 high [],deletion ADAMTS16 NA SNORD81 RN7SL58P NA NA NA NA NA +11:69986166 11:75277448 AP003555.3--ARRB1 BS_B1C6GZ84 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr11:5.25Mb]],inversion AP003555.3 NA ARRB1 NA NA NA NA NA NA +11:926088 11:75490320 AP2A2--GDPD5 BS_B1C6GZ84 ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr11:74.42Mb]],inversion AP2A2 NA GDPD5 NA NA NA NA NA NA +11:926088 11:75490320 AP2A2--GDPD5 BS_B1C6GZ84 STARFUSION other 11 1 NA [INTRACHROMOSOMAL[chr11:74.42Mb]] AP2A2 NA GDPD5 NA NA NA NA NA NA +11:68268054 11:46367291 C11orf24--DGKZ BS_B1C6GZ84 ARRIBA other 9 2 high [INTRACHROMOSOMAL[chr11:21.88Mb]],inversion C11orf24 NA DGKZ NA NA NA NA NA NA +4:54013837 4:54295125 CHIC2--PDGFRA BS_B1C6GZ84 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr4:0.16Mb]],inversion CHIC2 NA PDGFRA NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +4:54048955 4:54295125 CHIC2--PDGFRA BS_B1C6GZ84 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr4:0.16Mb]],inversion CHIC2 NA PDGFRA NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +4:54064182 4:54295125 CHIC2--PDGFRA BS_B1C6GZ84 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr4:0.16Mb]],inversion CHIC2 NA PDGFRA NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +4:54049039 4:54295125 CHIC2--PDGFRA BS_B1C6GZ84 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.16Mb]],inversion CHIC2 NA PDGFRA NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +5:11564944 5:52380905 CTNND2--RPS17P11(98046)/MFSD4BP1(198650) BS_B1C6GZ84 ARRIBA frameshift 2 1 medium [],duplication CTNND2 NA RPS17P11 MFSD4BP1 CosmicCensus, Oncogene NA NA NA NA +11:674536 11:72251543 DEAF1--AP000593.2(255)/AP000593.1(28608) BS_B1C6GZ84 ARRIBA frameshift 7 0 medium [],duplication DEAF1 NA AP000593.2 AP000593.1 TranscriptionFactor NA NA NA NA +11:66497477 11:20654713 DPP3--SLC6A5 BS_B1C6GZ84 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr11:45.82Mb]],duplication DPP3 NA SLC6A5 NA NA NA NA NA NA +11:1556944 11:62536569 DUSP8--AHNAK BS_B1C6GZ84 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr11:60.86Mb]],duplication DUSP8 NA AHNAK NA NA TumorSuppressorGene NA NA NA +11:1558112 11:62536567 DUSP8--AHNAK BS_B1C6GZ84 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:60.86Mb]],duplication DUSP8 NA AHNAK NA NA TumorSuppressorGene NA NA NA +22:29292849 5:53403178 EWSR1--AC026477.1(196002)/AC108114.1(10326) BS_B1C6GZ84 ARRIBA frameshift 4 0 medium [],translocation EWSR1 NA AC026477.1 AC108114.1 CosmicCensus, Oncogene NA NA NA NA +4:53379264 4:53081285 FIP1L1--SCFD2 BS_B1C6GZ84 ARRIBA frameshift 22 4 medium [INTRACHROMOSOMAL[chr4:0.01Mb],LOCAL_INVERSION:+:-:[11568]],duplication/5'-5' FIP1L1 NA SCFD2 NA CosmicCensus, Oncogene NA NA NA NA +11:33257889 11:20672332 HIPK3--NELL1 BS_B1C6GZ84 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr11:11.68Mb]],inversion/3'-3' HIPK3 NA NELL1 NA Kinase, Kinase NA NA NA NA +21:33642713 5:1094248 ITSN1--SLC12A7 BS_B1C6GZ84 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr21--chr5]],translocation ITSN1 NA SLC12A7 NA NA NA NA NA NA +5:36136309 5:31164165 LMBRD2--AC113386.1 BS_B1C6GZ84 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr5:4.83Mb]],deletion LMBRD2 NA AC113386.1 NA NA NA NA NA NA +12:40315798 4:67365616 LRRK2--RNU6-699P(468245)/AC104806.2(51689) BS_B1C6GZ84 ARRIBA other 2 1 medium [],translocation LRRK2 NA RNU6-699P AC104806.2 Kinase, Kinase NA NA NA NA +11:63900110 11:99368473 MARK2--CNTN5 BS_B1C6GZ84 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr11:35.11Mb]],inversion/3'-3' MARK2 NA CNTN5 NA Kinase, Kinase NA NA NA NA +5:53658624 5:4911673 NDUFS4--AC026415.1(36914)/AC010451.3(56091) BS_B1C6GZ84 ARRIBA frameshift 3 0 high [],duplication NDUFS4 NA AC026415.1 AC010451.3 NA NA NA NA NA +5:53658624 5:4935938 NDUFS4--AC026415.1(61179)/AC010451.3(31826) BS_B1C6GZ84 ARRIBA frameshift 2 1 high [],duplication NDUFS4 NA AC026415.1 AC010451.3 NA NA NA NA NA +5:53560760 21:44788095 NDUFS4--UBE2G2 BS_B1C6GZ84 ARRIBA frameshift 12 0 medium [INTERCHROMOSOMAL[chr5--chr21]],translocation NDUFS4 NA UBE2G2 NA NA NA NA NA NA +5:53560760 21:44777417 NDUFS4--UBE2G2 BS_B1C6GZ84 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr5--chr21]],translocation NDUFS4 NA UBE2G2 NA NA NA NA NA NA +10:81876163 12:4299860 NRG3--CCND2 BS_B1C6GZ84 ARRIBA frameshift 6 1 medium [INTERCHROMOSOMAL[chr10--chr12]],translocation NRG3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA +12:57430720 12:57816059 R3HDM2--AVIL BS_B1C6GZ84 ARRIBA other 9 0 high [INTRACHROMOSOMAL[chr12:0.37Mb]],duplication R3HDM2 NA AVIL NA NA NA NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_B1C6GZ84 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:53273826 4:54205723 SCFD2--GSX2(103218)/RPL22P13(15403) BS_B1C6GZ84 ARRIBA frameshift 22 2 high [],inversion SCFD2 NA GSX2 RPL22P13 NA TranscriptionFactor NA NA NA +4:53273826 4:53548875 SCFD2--LNX1-AS1 BS_B1C6GZ84 ARRIBA frameshift 17 4 high [INTRACHROMOSOMAL[chr4:0.13Mb]],inversion SCFD2 NA LNX1-AS1 NA NA NA NA NA NA +4:53273826 4:53524195 SCFD2--LNX1-AS1 BS_B1C6GZ84 ARRIBA frameshift 15 4 high [INTRACHROMOSOMAL[chr4:0.13Mb]],inversion SCFD2 NA LNX1-AS1 NA NA NA NA NA NA +4:53273826 4:53549357 SCFD2--LNX1-AS1 BS_B1C6GZ84 ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr4:0.13Mb]],inversion SCFD2 NA LNX1-AS1 NA NA NA NA NA NA +4:53273826 4:53522990 SCFD2--LNX1-AS1 BS_B1C6GZ84 ARRIBA frameshift 3 4 medium [INTRACHROMOSOMAL[chr4:0.13Mb]],inversion SCFD2 NA LNX1-AS1 NA NA NA NA NA NA +4:53273826 4:53548875 SCFD2--LNX1-AS1 BS_B1C6GZ84 STARFUSION other 26 7 NA [INTRACHROMOSOMAL[chr4:0.13Mb]] SCFD2 NA LNX1-AS1 NA NA NA NA NA NA +4:53273826 4:53549357 SCFD2--LNX1-AS1 BS_B1C6GZ84 STARFUSION other 16 7 NA [INTRACHROMOSOMAL[chr4:0.13Mb]] SCFD2 NA LNX1-AS1 NA NA NA NA NA NA +4:53273826 4:53524195 SCFD2--LNX1-AS1 BS_B1C6GZ84 STARFUSION other 16 7 NA [INTRACHROMOSOMAL[chr4:0.13Mb]] SCFD2 NA LNX1-AS1 NA NA NA NA NA NA +4:53273826 4:54258757 SCFD2--PDGFRA BS_B1C6GZ84 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr4:0.86Mb]],inversion SCFD2 NA PDGFRA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +4:53273826 4:54295125 SCFD2--PDGFRA BS_B1C6GZ84 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.86Mb]],inversion SCFD2 NA PDGFRA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +4:53313636 4:54258757 SCFD2--PDGFRA BS_B1C6GZ84 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.86Mb]],inversion SCFD2 NA PDGFRA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +4:76996539 5:93621129 SEPT11--FAM172A BS_B1C6GZ84 ARRIBA in-frame 22 3 high [INTERCHROMOSOMAL[chr4--chr5]],translocation SEPT11 NA FAM172A NA NA TumorSuppressorGene NA NA NA +4:76996539 5:93621129 SEPT11--FAM172A BS_B1C6GZ84 STARFUSION in-frame 22 3 NA [INTERCHROMOSOMAL[chr4--chr5]] SEPT11 NA FAM172A NA NA TumorSuppressorGene NA NA NA +11:66068216 11:62177107 SF3B2--EEF1DP8(7279)/SCGB1D1(13109) BS_B1C6GZ84 ARRIBA frameshift 4 0 medium [],duplication SF3B2 NA EEF1DP8 SCGB1D1 NA NA NA NA NA +11:66068045 11:62192272 SF3B2--SCGB1D1 BS_B1C6GZ84 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr11:3.86Mb]],duplication SF3B2 NA SCGB1D1 NA NA NA NA NA NA +11:66068045 11:62192056 SF3B2--SCGB1D1 BS_B1C6GZ84 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr11:3.86Mb]],duplication SF3B2 NA SCGB1D1 NA NA NA NA NA NA +5:81750981 5:6023109 SSBP2--AC010266.2(826)/AC010266.1(6926) BS_B1C6GZ84 ARRIBA frameshift 3 0 medium [],deletion SSBP2 NA AC010266.2 AC010266.1 TumorSuppressorGene NA NA NA NA +12:4337160 12:3058266 TIGAR--AC125807.2(13316)/AC125807.1(13266) BS_B1C6GZ84 ARRIBA frameshift 99 8 high [],inversion TIGAR NA AC125807.2 AC125807.1 NA NA NA NA NA +5:14381252 5:27055352 TRIO--CDH9 BS_B1C6GZ84 ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr5:12.35Mb]],deletion/5'-5' TRIO NA CDH9 NA Kinase, Oncogene, Kinase NA NA NA NA +5:14143882 5:95943049 TRIO--ELL2 BS_B1C6GZ84 ARRIBA frameshift 11 2 high [INTRACHROMOSOMAL[chr5:81.35Mb]],inversion TRIO NA ELL2 NA Kinase, Oncogene, Kinase NA NA NA NA +5:14143882 5:95943049 TRIO--ELL2 BS_B1C6GZ84 STARFUSION frameshift 10 2 NA [INTRACHROMOSOMAL[chr5:81.35Mb]] TRIO NA ELL2 NA Kinase, Oncogene, Kinase NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_B1HVNV0T ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_B1HVNV0T ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +18:65844065 18:65809704 CDH7--CDH7 BS_B1HVNV0T ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_B1HVNV0T ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_B1HVNV0T ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_B1HVNV0T ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_B1HVNV0T ARRIBA in-frame 10 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +7:43501322 7:43492075 HECW1--HECW1 BS_B1HVNV0T ARRIBA frameshift 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_B1HVNV0T ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +6:132134483 6:132090446 LINC01013--AL021408.1 BS_B1HVNV0T ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA +6:132134483 6:132098931 LINC01013--AL021408.1 BS_B1HVNV0T ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA +16:76635623 16:76535545 LINC02125--CNTNAP4 BS_B1HVNV0T ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr16:0.08Mb],LOCAL_REARRANGEMENT:+:[75760]],duplication LINC02125 NA CNTNAP4 NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_B1HVNV0T ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_B1HVNV0T ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_B1HVNV0T ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_B1HVNV0T ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:130288227 6:130313093 SAMD3--SAMD3 BS_B1HVNV0T ARRIBA other 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_B24PKKQB ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_B24PKKQB ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29897852 22:36302678 SEZ6L2--MYH9 BS_B24PKKQB ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr16--chr22]],translocation SEZ6L2 NA MYH9 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +6:52995862 10:17229600 7SK--VIM BS_B3M5SGPA STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr10]] 7SK NA VIM NA NA TumorSuppressorGene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_B3M5SGPA ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_B3M5SGPA ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:154053063 7:149891301 DPP6--AC092681.1 BS_B3M5SGPA ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:3.98Mb]],inversion DPP6 NA AC092681.1 NA NA NA NA NA NA +9:20922001 9:14307520 FOCAD--NFIB BS_B3M5SGPA ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr9:6.26Mb]],deletion/3'-3' FOCAD NA NFIB NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +3:168910814 3:168821193 LINC02082--EGFEM1P BS_B3M5SGPA ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr3:0.07Mb],LOCAL_REARRANGEMENT:+:[72767]],duplication LINC02082 NA EGFEM1P NA NA NA NA NA NA +9:14306989 9:20944296 NFIB--FOCAD BS_B3M5SGPA ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:6.26Mb]],duplication/5'-5' NFIB NA FOCAD NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +6:163455421 6:96799881 QKI--GPR63 BS_B3M5SGPA STARFUSION other 30 4 NA [INTRACHROMOSOMAL[chr6:66.58Mb]] QKI NA GPR63 NA TumorSuppressorGene, CosmicCensus NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_B3M5SGPA ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:103893875 11:104000255 AP002989.1--PDGFD BS_B53Z0T1Q ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11915]],duplication AP002989.1 NA PDGFD NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_B61168DE ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_B61168DE ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +22:32273507 22:32268288 AL008723.1--SLC5A4-AS1 BS_B61168DE STARFUSION other 12 4 NA [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]] AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA +20:63286443 20:40688332 ARFGAP1--MAFB BS_B61168DE ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr20:22.58Mb]],duplication/5'-5' ARFGAP1 NA MAFB NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +20:6770472 20:18847578 BMP2--C20orf78(17425)/AL135936.1(153131) BS_B61168DE ARRIBA frameshift 3 0 high [],inversion BMP2 NA C20orf78 AL135936.1 TumorSuppressorGene NA NA NA NA +20:18596241 20:11556959 DTD1--AL109837.2(15312)/AL109837.1(51477) BS_B61168DE ARRIBA frameshift 3 0 high [],inversion DTD1 NA AL109837.2 AL109837.1 NA NA NA NA NA +20:3148309 20:11565594 FASTKD5--AL109837.2(23947)/AL109837.1(42842) BS_B61168DE ARRIBA frameshift 18 1 medium [],inversion FASTKD5 NA AL109837.2 AL109837.1 NA NA NA NA NA +20:6120393 20:1326461 FERMT1--SDCBP2-AS1 BS_B61168DE ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr20:4.70Mb]],deletion/5'-5' FERMT1 NA SDCBP2-AS1 NA NA NA NA NA NA +4:142402938 4:143415477 INPP4B--GAB1 BS_B61168DE ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr4:0.49Mb]],inversion INPP4B NA GAB1 NA TumorSuppressorGene Oncogene NA NA NA +20:62123613 20:61556850 LSM14B--CDH4 BS_B61168DE ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr20:0.18Mb]],duplication LSM14B NA CDH4 NA NA TumorSuppressorGene NA NA NA +20:18493958 20:22672008 RBBP9--LINC01747 BS_B61168DE ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr20:4.17Mb]],duplication RBBP9 NA LINC01747 NA NA NA NA NA NA +20:18493958 20:22669520 RBBP9--LINC01747 BS_B61168DE ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr20:4.17Mb]],duplication RBBP9 NA LINC01747 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_B61168DE ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +20:62960603 20:25576647 SLC17A9--NINL BS_B61168DE ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr20:37.37Mb]],duplication/5'-5' SLC17A9 NA NINL NA NA NA NA NA NA +20:62960603 20:25593793 SLC17A9--NINL(8276)/RNU6ATAC17P(17360) BS_B61168DE ARRIBA frameshift 1 1 high [],duplication SLC17A9 NA NINL RNU6ATAC17P NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_B6M763JS ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +6:130288227 6:130313093 SAMD3--SAMD3 BS_B6M763JS ARRIBA other 8 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA +6:52995911 9:35657985 7SK--RMRP BS_B741RZY9 STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr1--chr9]] 7SK NA RMRP NA NA Oncogene NA NA NA +22:21008779 22:21013184 AC002472.2--AC002472.3 BS_B741RZY9 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[1931]],duplication AC002472.2 NA AC002472.3 NA NA NA NA NA NA +5:131439581 5:131548190 AC008695.1--AC008695.1 BS_B741RZY9 ARRIBA frameshift 3 0 low [SELFIE],duplication/non-canonical_splicing AC008695.1 NA AC008695.1 NA NA NA NA NA NA +5:131472587 5:131521521 AC008695.1--RAPGEF6 BS_B741RZY9 ARRIBA frameshift 1 0 low [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA +5:131504626 5:131548190 AC008695.1--RAPGEF6 BS_B741RZY9 ARRIBA in-frame 1 0 low [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA +5:131439581 5:131548190 AC008695.1--RAPGEF6 BS_B741RZY9 ARRIBA frameshift 3 0 medium [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA +3:107380585 3:107462735 AC063944.1--LINC01990 BS_B741RZY9 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr3:0.01Mb],LOCAL_INVERSION:-:+:[9626]],duplication/5'-5' AC063944.1 NA LINC01990 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_B741RZY9 ARRIBA other 6 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +4:151352900 4:151405608 AC104819.3--AC104819.3(52384)/AC079795.1(1943) BS_B741RZY9 ARRIBA other 4 0 high [],duplication AC104819.3 NA AC104819.3 AC079795.1 NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_B741RZY9 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_B741RZY9 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93557472 AC110023.1--AC091078.1 BS_B741RZY9 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_B741RZY9 ARRIBA in-frame 24 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +1:181511510 1:181483744 CACNA1E--CACNA1E BS_B741RZY9 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_B741RZY9 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +12:123859268 12:123853206 DNAH10--DNAH10 BS_B741RZY9 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA +17:11905809 17:11891777 DNAH9--DNAH9 BS_B741RZY9 ARRIBA frameshift 12 3 low [SELFIE,INTRACHROMOSOMAL[chr17:0.37Mb]],duplication/non-canonical_splicing DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA +6:138889031 6:138842979 ECT2L--ECT2L BS_B741RZY9 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA +14:89870643 14:89932627 EFCAB11--EFCAB11 BS_B741RZY9 ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA +7:102913086 7:103029418 FBXL13--FBXL13 BS_B741RZY9 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.26Mb]],duplication/non-canonical_splicing FBXL13 NA FBXL13 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_B741RZY9 ARRIBA frameshift 1 1 medium [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_B741RZY9 ARRIBA other 2 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +12:25503738 12:25549546 LMNTD1--LMNTD1 BS_B741RZY9 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +13:52123838 12:95842555 NEK5--AC090001.1 BS_B741RZY9 ARRIBA frameshift 7 0 low [INTERCHROMOSOMAL[chr13--chr12]],translocation NEK5 NA AC090001.1 NA Kinase, Kinase NA NA NA NA +5:131439581 5:131548190 RAPGEF6--AC008695.1 BS_B741RZY9 ARRIBA frameshift 3 0 medium [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA +5:131472587 5:131521521 RAPGEF6--AC008695.1 BS_B741RZY9 ARRIBA frameshift 1 0 low [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA +5:131504626 5:131548190 RAPGEF6--AC008695.1 BS_B741RZY9 ARRIBA in-frame 1 0 low [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA +5:131439581 5:131548190 RAPGEF6--RAPGEF6 BS_B741RZY9 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.21Mb]],duplication/non-canonical_splicing RAPGEF6 NA RAPGEF6 NA NA NA NA NA NA +12:106750793 12:106686884 RFX4--RFX4 BS_B741RZY9 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +9:35657771 14:49862791 RMRP--RN7SL2 BS_B741RZY9 STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL2 NA Oncogene NA NA NA NA +14:49862569 6:52995745 RN7SL2--7SK BS_B741RZY9 STARFUSION other 5 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862555 6:52995675 RN7SL2--7SK BS_B741RZY9 STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862560 6:52995633 RN7SL2--7SK BS_B741RZY9 STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862560 6:52995647 RN7SL2--7SK BS_B741RZY9 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862572 6:52995792 RN7SL2--7SK BS_B741RZY9 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862558 6:52995745 RN7SL2--7SK BS_B741RZY9 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862572 6:52995635 RN7SL2--7SK BS_B741RZY9 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862572 6:52995705 RN7SL2--7SK BS_B741RZY9 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +4:16355785 4:16238771 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_B741RZY9 ARRIBA other 3 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +5:110387266 5:110424916 TMEM232--TMEM232 BS_B741RZY9 ARRIBA other 7 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA +15:76137895 15:76112018 TMEM266--TMEM266 BS_B741RZY9 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.17Mb]],duplication/non-canonical_splicing TMEM266 NA TMEM266 NA NA NA NA NA NA +8:93831572 8:93755020 TMEM67(12338)/AC084346.1(2882)--TMEM67 BS_B741RZY9 ARRIBA other 1 1 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +9:70681506 9:70784279 TRPM3--TRPM3 BS_B741RZY9 ARRIBA in-frame 24 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA +14:37968588 14:37874460 TTC6--TTC6 BS_B741RZY9 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_B7GEH89C ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_B7GEH89C ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_B7GEH89C ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_B7QS4DHK ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_B7QS4DHK ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:49586855 14:20343235 AL139099.5--AL355075.4 BS_B7QS4DHK STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586855 14:20343235 AL139099.5--RPPH1 BS_B7QS4DHK STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_B7QS4DHK ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +1:167413114 1:167411959 POU2F1--POU2F1 BS_B7QS4DHK ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing POU2F1 NA POU2F1 NA TranscriptionFactor TranscriptionFactor NA NA NA +14:49586855 14:20343235 RN7SL1--AL355075.4 BS_B7QS4DHK STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586855 14:20343235 RN7SL1--RPPH1 BS_B7QS4DHK STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_B7QS4DHK ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:151664087 19:40623604 SPARC--LTBP4 BS_B7QS4DHK ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr5--chr19]],translocation SPARC NA LTBP4 NA TumorSuppressorGene NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_B7QS4DHK ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_B7X8VXQ3 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_B7X8VXQ3 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_B7X8VXQ3 ARRIBA in-frame 3 0 medium [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_B7X8VXQ3 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_B8T7M0WV ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_B8T7M0WV ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_B8T7M0WV ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +9:38462233 9:38456118 AL390726.6--AL390726.6 BS_B8T7M0WV ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing AL390726.6 NA AL390726.6 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_B8T7M0WV ARRIBA other 2 1 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_B8T7M0WV ARRIBA in-frame 25 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_B8T7M0WV ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +16:76449858 16:76448012 CNTNAP4--CNTNAP4 BS_B8T7M0WV ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.28Mb]],duplication/non-canonical_splicing CNTNAP4 NA CNTNAP4 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_B8T7M0WV ARRIBA other 18 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_B8T7M0WV ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_B8T7M0WV ARRIBA frameshift 11 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +18:42454989 18:42453932 LINC00907--LINC00907 BS_B8T7M0WV ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.53Mb]],duplication/non-canonical_splicing LINC00907 NA LINC00907 NA NA NA NA NA NA +15:75943572 15:76011286 NRG4--NRG4 BS_B8T7M0WV ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_B8T7M0WV ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995908 14:49862647 7SK--RN7SL2 BS_B9V8RGTA STARFUSION other 3 8 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:72025266 19:21298016 DHODH--ZNF708 BS_B9V8RGTA ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr16--chr19]],translocation DHODH NA ZNF708 NA NA TranscriptionFactor NA NA NA +4:99946439 4:100181848 DNAJB14--AC097460.1 BS_B9V8RGTA ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr4:0.00Mb],LOCAL_INVERSION:-:+:[3280]],inversion DNAJB14 NA AC097460.1 NA NA NA NA NA NA +4:99946439 4:100181848 DNAJB14--DDIT4L BS_B9V8RGTA ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr4:0.24Mb]],inversion/5'-5' DNAJB14 NA DDIT4L NA NA NA NA NA NA +3:184155978 13:45805017 DVL3--SIAH3 BS_B9V8RGTA ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr3--chr13]],translocation/5'-5' DVL3 NA SIAH3 NA NA NA NA NA NA +22:29287134 11:128805366 EWSR1--FLI1 BS_B9V8RGTA ARRIBA in-frame 51 3 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +22:29288786 11:128805366 EWSR1--FLI1 BS_B9V8RGTA ARRIBA frameshift 1 3 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +22:29287134 11:128807180 EWSR1--FLI1 BS_B9V8RGTA ARRIBA in-frame 1 1 medium [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +22:29287134 11:128805366 EWSR1--FLI1 BS_B9V8RGTA STARFUSION in-frame 51 3 NA [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]] EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +5:62561257 11:54943832 IPO11--OR4A6P(218016)/TRIM48(318350) BS_B9V8RGTA ARRIBA frameshift 4 0 high [],translocation IPO11 NA OR4A6P TRIM48 NA NA NA NA NA +19:49542752 19:49526010 RCN3--FCGRT BS_B9V8RGTA ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:+:[1285]],duplication RCN3 NA FCGRT NA NA NA NA NA NA +11:74789699 20:9290161 RNF169--PLCB4 BS_B9V8RGTA ARRIBA frameshift 10 0 high [INTERCHROMOSOMAL[chr11--chr20]],translocation/5'-5' RNF169 NA PLCB4 NA NA NA NA NA NA +13:45851495 3:184140955 SIAH3--EIF2B5 BS_B9V8RGTA ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr13--chr3]],translocation/5'-5' SIAH3 NA EIF2B5 NA NA NA NA NA NA +X:123960866 5:2270861 STAG2--AC092266.1(8838)/LSINCT5(441730) BS_B9V8RGTA ARRIBA other 12 1 high [],translocation STAG2 NA AC092266.1 LSINCT5 CosmicCensus, Oncogene NA NA NA NA +2:217990942 2:207309163 TNS1--AC009226.1 BS_B9V8RGTA ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr2:10.27Mb]],inversion/5'-5' TNS1 NA AC009226.1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_BA6AZWB3 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_BA6AZWB3 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_BA6AZWB3 ARRIBA other 23 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_BA6AZWB3 ARRIBA other 6 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_BA6AZWB3 ARRIBA other 23 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_BA6AZWB3 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_BB0YW800 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_BB0YW800 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_BB0YW800 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_BB0YW800 ARRIBA in-frame 4 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +9:35657753 14:49862666 RMRP--RN7SL2 BS_BB0YW800 STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL2 NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_BB0YW800 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_BB0YW800 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_BC936YNZ ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_BC936YNZ ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:140794308 2:229026108 BRAF--PID1 BS_BC936YNZ ARRIBA in-frame 20 0 high [INTERCHROMOSOMAL[chr7--chr2]],translocation BRAF NA PID1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +7:140794308 2:229026108 BRAF--PID1 BS_BC936YNZ STARFUSION in-frame 23 0 NA [INTERCHROMOSOMAL[chr7--chr2]] BRAF NA PID1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +2:229155818 7:140783157 PID1--BRAF BS_BC936YNZ ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr2--chr7]],translocation PID1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:229024707 7:140808995 PID1--BRAF BS_BC936YNZ ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr2--chr7]],translocation PID1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:229155818 7:140787584 PID1--BRAF BS_BC936YNZ ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr2--chr7]],translocation PID1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +10:120521095 10:120503818 PLPP4--PLPP4 BS_BC936YNZ ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/non-canonical_splicing PLPP4 NA PLPP4 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_BC936YNZ ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_BHR08WGW ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_BHR08WGW ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_BHR08WGW ARRIBA other 3 0 low [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_BHR08WGW ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:219218712 1:219210532 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_BHR08WGW ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_BHR08WGW ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_BJDNWMJH ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_BJDNWMJH ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_BJDNWMJH ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:132885103 10:132916682 CFAP46--CFAP46 BS_BJDNWMJH ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/non-canonical_splicing CFAP46 NA CFAP46 NA NA NA NA NA NA +X:36205110 X:36065643 CFAP47--CFAP47 BS_BJDNWMJH ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +2:212538449 2:212563798 ERBB4--ERBB4(24957)/AC093865.1(17559) BS_BJDNWMJH ARRIBA frameshift 2 1 medium [],duplication ERBB4 NA ERBB4 AC093865.1 Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +1:15369502 1:15367463 FHAD1--FHAD1 BS_BJDNWMJH ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA +7:43493180 7:43450828 HECW1--HECW1 BS_BJDNWMJH ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_BJDNWMJH ARRIBA other 8 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_BJDNWMJH ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_BJDNWMJH ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_BJDNWMJH ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_BJDNWMJH ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_BJDNWMJH ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_BJDNWMJH ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_BKQZ550R ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_BKQZ550R ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:18662073 9:99359459 ADAMTSL1--NAMA BS_BKQZ550R ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr9:80.44Mb]],deletion/5'-5' ADAMTSL1 NA NAMA NA NA NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_BKQZ550R ARRIBA other 7 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +9:111631743 9:96398763 DNAJC25--ZNF367 BS_BKQZ550R ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr9:15.21Mb]],duplication/5'-5' DNAJC25 NA ZNF367 NA NA TranscriptionFactor NA NA NA +9:111631743 9:96398763 DNAJC25-GNG10--ZNF367 BS_BKQZ550R ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr9:15.21Mb]],duplication/5'-5' DNAJC25-GNG10 NA ZNF367 NA NA TranscriptionFactor NA NA NA +9:127345477 9:12821386 GARNL3--LURAP1L BS_BKQZ550R ARRIBA in-frame 2 0 high [INTRACHROMOSOMAL[chr9:114.40Mb]],duplication GARNL3 NA LURAP1L NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_BKQZ550R ARRIBA other 6 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +9:713464 9:84741892 KANK1--NTRK2 BS_BKQZ550R ARRIBA in-frame 85 15 high [INTRACHROMOSOMAL[chr9:83.92Mb]],deletion KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA +9:713464 9:84744973 KANK1--NTRK2 BS_BKQZ550R ARRIBA in-frame 7 6 medium [INTRACHROMOSOMAL[chr9:83.92Mb]],deletion KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA +9:677009 9:84744973 KANK1--NTRK2 BS_BKQZ550R ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:83.92Mb]],deletion KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA +9:677009 9:84741892 KANK1--NTRK2 BS_BKQZ550R ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:83.92Mb]],deletion KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA +9:713464 9:84741892 KANK1--NTRK2 BS_BKQZ550R STARFUSION in-frame 87 15 NA [INTRACHROMOSOMAL[chr9:83.92Mb]] KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA +9:13147548 9:24545061 MPDZ--IZUMO3 BS_BKQZ550R ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr9:11.26Mb]],duplication MPDZ NA IZUMO3 NA NA NA NA NA NA +9:101185557 9:19622299 PLPPR1--SLC24A2 BS_BKQZ550R ARRIBA in-frame 22 6 high [INTRACHROMOSOMAL[chr9:81.24Mb]],inversion PLPPR1 NA SLC24A2 NA NA NA NA NA NA +9:101185557 9:19622299 PLPPR1--SLC24A2 BS_BKQZ550R STARFUSION in-frame 21 6 NA [INTRACHROMOSOMAL[chr9:81.24Mb]] PLPPR1 NA SLC24A2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_BKQZ550R ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:100498874 9:88382032 TMEFF1--RPSAP49(56693)/SPIN1(6387) BS_BKQZ550R ARRIBA frameshift 2 0 high [],duplication TMEFF1 NA RPSAP49 SPIN1 TumorSuppressorGene NA NA NA NA +9:132944572 9:93829233 TSC1--MIR4291(9812)/AL442224.1(27850) BS_BKQZ550R ARRIBA other 5 0 low [],deletion TSC1 NA MIR4291 AL442224.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_BKR4E30C ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_BKR4E30C ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:20343074 14:49862665 AL355075.4--RN7SL2 BS_BKR4E30C STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] AL355075.4 NA RN7SL2 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_BKR4E30C ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_BKR4E30C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_BKR4E30C ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_BKR4E30C ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_BKR4E30C ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_BKR4E30C ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211103602 AL590132.1--KCNH1 BS_BKR4E30C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_BKR4E30C ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +3:2903005 3:2883145 CNTN4--CNTN4 BS_BKR4E30C ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_BKR4E30C ARRIBA in-frame 21 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:240355908 1:240206799 FMN2--FMN2 BS_BKR4E30C ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing FMN2 NA FMN2 NA NA NA NA NA NA +5:153770415 5:153764434 GRIA1--GRIA1 BS_BKR4E30C ARRIBA in-frame 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.32Mb]],duplication/non-canonical_splicing GRIA1 NA GRIA1 NA NA NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_BKR4E30C ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_BKR4E30C ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_BKR4E30C ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_BKR4E30C ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_BKR4E30C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_BKR4E30C ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211103602 KCNH1--AL590132.1 BS_BKR4E30C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_BKR4E30C ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_BKR4E30C ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +12:39319906 12:39322882 KIF21A--KIF21A BS_BKR4E30C ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing KIF21A NA KIF21A NA NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_BKR4E30C ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_BKR4E30C ARRIBA frameshift 7 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_BKR4E30C ARRIBA other 6 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +18:34093465 18:34112697 NOL4--NOL4 BS_BKR4E30C ARRIBA frameshift 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr18:0.37Mb]],duplication NOL4 NA NOL4 NA NA NA NA NA NA +14:20343074 14:49862665 RPPH1--RN7SL2 BS_BKR4E30C STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RPPH1 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_BKR4E30C ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_BKR4E30C ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_BKR4E30C ARRIBA other 3 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +X:54248697 X:54259338 WNK3--WNK3 BS_BKR4E30C ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA +X:146955175 X:146916390 Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_BKR4E30C ARRIBA other 9 0 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_BN986DF6 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_BN986DF6 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_BN986DF6 ARRIBA in-frame 4 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_BN986DF6 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_BPSTSCBJ ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_BPSTSCBJ ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_BPSTSCBJ ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_BPSTSCBJ ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_BPSTSCBJ ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_BPSTSCBJ ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_BPSTSCBJ ARRIBA in-frame 6 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_BPSTSCBJ ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_BPSTSCBJ ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_BPSTSCBJ ARRIBA other 13 1 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +6:52995907 14:49862761 7SK--RN7SL2 BS_BPWEFR89 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_BPWEFR89 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_BPWEFR89 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:1386653 5:3372867 AC026748.1--LINC01377(191635)/LINC01019(44285) BS_BPWEFR89 ARRIBA other 1 1 medium [],deletion AC026748.1 NA LINC01377 LINC01019 NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_BPWEFR89 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +4:55968673 3:123951431 CEP135--CCDC14 BS_BPWEFR89 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr4--chr3]],translocation CEP135 NA CCDC14 NA NA NA NA NA NA +15:21617244 15:21595606 LINC02203--LINC02203 BS_BPWEFR89 ARRIBA other 16 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.10Mb]],duplication/non-canonical_splicing LINC02203 NA LINC02203 NA NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_BPWEFR89 ARRIBA frameshift 28 6 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +10:87288442 10:50667098 NUTM2A-AS1--BEND3P1(6626)/NUTM2HP(9645) BS_BPWEFR89 ARRIBA other 2 0 medium [],deletion NUTM2A-AS1 NA BEND3P1 NUTM2HP NA NA NA NA NA +7:39086031 7:38986246 POU6F2--POU6F2 BS_BPWEFR89 ARRIBA frameshift 25 2 medium [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_BPWEFR89 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_BPWEFR89 ARRIBA other 15 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +18:26267623 18:26265170 TAF4B--TAF4B BS_BPWEFR89 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.17Mb]],duplication/non-canonical_splicing TAF4B NA TAF4B NA NA NA NA NA NA +3:113677282 9:94461361 USF3--MFSD14B(319)/AL358232.1(34914) BS_BPWEFR89 ARRIBA other 4 0 medium [],translocation USF3 NA MFSD14B AL358232.1 TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_BSV07M7Z ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_BSV07M7Z ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_BSV07M7Z ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +9:100586185 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_BSV07M7Z ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_BSV07M7Z ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100586185 9:100576516 CAVIN4--TMEFF1 BS_BSV07M7Z ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_BSV07M7Z ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_BSV07M7Z ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +22:31495983 17:27212658 EIF4ENIF1--AC069061.4(128622)/AC129926.1(25201) BS_BSV07M7Z ARRIBA other 3 1 medium [],translocation EIF4ENIF1 NA AC069061.4 AC129926.1 NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_BSV07M7Z ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_BSV07M7Z ARRIBA frameshift 19 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_BSV07M7Z ARRIBA frameshift 16 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_BSV07M7Z ARRIBA in-frame 15 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_BSV07M7Z ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +1:107407708 1:106986174 NTNG1--LINC01661(148007)/PRMT6(70505) BS_BSV07M7Z ARRIBA frameshift 2 0 medium [],duplication NTNG1 NA LINC01661 PRMT6 NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_BSV07M7Z ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +9:35657881 6:52995632 RMRP--7SK BS_BSV07M7Z STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr9--chr1]] RMRP NA 7SK NA Oncogene NA NA NA NA +6:52995861 14:49862668 RN7SK--RN7SL2 BS_BSV07M7Z STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +6:52995908 14:49862726 RN7SK--RN7SL2 BS_BSV07M7Z STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +6:52995911 14:49862646 RN7SK--RN7SL2 BS_BSV07M7Z STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +6:52995807 14:49862667 RN7SK--RN7SL2 BS_BSV07M7Z STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +14:49862570 14:20343378 RN7SL2--AL355075.4 BS_BSV07M7Z STARFUSION other 6 9 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862570 14:20343378 RN7SL2--RPPH1 BS_BSV07M7Z STARFUSION other 6 9 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_BSV07M7Z ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:22401277 10:22359411 SPAG6--SPAG6 BS_BSV07M7Z ARRIBA frameshift 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr10:0.11Mb]],duplication SPAG6 NA SPAG6 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_BSV07M7Z ARRIBA frameshift 39 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:216175252 1:216207431 USH2A--USH2A BS_BSV07M7Z ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +19:52406643 19:52369560 ZNF528--ZNF610(1782)/ZNF880(357) BS_BSV07M7Z ARRIBA frameshift 3 0 medium [],duplication ZNF528 NA ZNF610 ZNF880 TranscriptionFactor TranscriptionFactor NA TranscriptionFactor NA +17:15701240 6:108561086 AC005324.4--FOXO3 BS_BVSW4GTG ARRIBA in-frame 5 0 medium [INTERCHROMOSOMAL[chr17--chr6]],translocation AC005324.4 NA FOXO3 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_BVSW4GTG ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_BVSW4GTG ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:63952483 3:58130741 ATXN7--FLNB BS_BVSW4GTG ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr3:5.69Mb]],duplication ATXN7 NA FLNB NA NA Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_BVSW4GTG ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_BVSW4GTG ARRIBA other 9 1 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +17:15701240 6:108561086 ZNF286A--FOXO3 BS_BVSW4GTG ARRIBA in-frame 5 0 medium [INTERCHROMOSOMAL[chr17--chr6]],translocation ZNF286A NA FOXO3 NA TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +6:52995907 14:49862666 7SK--RN7SL2 BS_BWBDH9GM STARFUSION other 8 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995854 14:49862667 7SK--RN7SL2 BS_BWBDH9GM STARFUSION other 6 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995907 14:49862730 7SK--RN7SL2 BS_BWBDH9GM STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995906 14:49862672 7SK--RN7SL2 BS_BWBDH9GM STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995796 14:49862668 7SK--RN7SL2 BS_BWBDH9GM STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995777 14:49862674 7SK--RN7SL2 BS_BWBDH9GM STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995818 14:49862669 7SK--RN7SL2 BS_BWBDH9GM STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995844 14:49862669 7SK--RN7SL2 BS_BWBDH9GM STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995790 14:49862671 7SK--RN7SL2 BS_BWBDH9GM STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_BWBDH9GM ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_BWBDH9GM ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:79740106 11:77702495 AP001978.1(127806)/AP001541.1(226699)--RSF1 BS_BWBDH9GM ARRIBA other 1 0 low [],inversion AP001978.1 AP001541.1 RSF1 NA NA Oncogene NA NA NA +21:10473729 21:10454134 BAGE2--BAGE2 BS_BWBDH9GM ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.10Mb]],duplication/non-canonical_splicing BAGE2 NA BAGE2 NA NA NA NA NA NA +6:36902434 14:100987150 C6orf89--MEG8 BS_BWBDH9GM ARRIBA frameshift 35 2 high [INTERCHROMOSOMAL[chr6--chr14]],translocation/5'-5' C6orf89 NA MEG8 NA NA NA NA NA NA +9:62806330 9:62818561 LINC01410--LINC01410(5075)/AL512625.2(19187) BS_BWBDH9GM ARRIBA other 2 0 low [],inversion LINC01410 NA LINC01410 AL512625.2 NA NA NA NA NA +8:32029485 8:31844448 NRG1-IT1--NRG1 BS_BWBDH9GM ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr8:0.11Mb]],duplication NRG1-IT1 NA NRG1 NA NA CosmicCensus NA NA NA +2:222294167 2:221750724 PAX3--AC068489.1(108911)/AC009302.1(193499) BS_BWBDH9GM ARRIBA frameshift 6 2 medium [],deletion PAX3 NA AC068489.1 AC009302.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +2:222294167 2:221587487 PAX3--AC079834.2(13033)/AC079834.1(4954) BS_BWBDH9GM ARRIBA frameshift 40 5 high [],deletion PAX3 NA AC079834.2 AC079834.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +6:161785772 6:10215072 PRKN--AL354868.1(710)/RNU6ATAC21P(6964) BS_BWBDH9GM ARRIBA frameshift 2 1 high [],inversion PRKN NA AL354868.1 RNU6ATAC21P NA NA NA NA NA +9:35657874 6:52995627 RMRP--7SK BS_BWBDH9GM STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr9--chr1]] RMRP NA 7SK NA Oncogene NA NA NA NA +14:49862560 14:20343401 RN7SL2--AL355075.4 BS_BWBDH9GM STARFUSION other 8 14 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862571 14:20343396 RN7SL2--AL355075.4 BS_BWBDH9GM STARFUSION other 5 14 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862560 14:20343401 RN7SL2--RPPH1 BS_BWBDH9GM STARFUSION other 8 14 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862569 14:20343403 RN7SL2--RPPH1 BS_BWBDH9GM STARFUSION other 6 14 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_BWBDH9GM ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:77672042 11:79732674 RSF1--AP001978.1(120374)/AP001541.1(234131) BS_BWBDH9GM ARRIBA frameshift 8 1 high [],inversion RSF1 NA AP001978.1 AP001541.1 Oncogene NA NA NA NA +11:77672042 11:79775255 RSF1--AP001978.1(162955)/AP001541.1(191550) BS_BWBDH9GM ARRIBA frameshift 3 0 high [],inversion RSF1 NA AP001978.1 AP001541.1 Oncogene NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_BWBDH9GM ARRIBA other 25 1 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +11:121024291 11:121622162 TBCEL--SORL1 BS_BWBDH9GM ARRIBA other 28 2 high [INTRACHROMOSOMAL[chr11:0.36Mb]],deletion TBCEL NA SORL1 NA NA Oncogene NA NA NA +11:121036612 11:121622162 TBCEL--SORL1 BS_BWBDH9GM ARRIBA other 7 3 high [INTRACHROMOSOMAL[chr11:0.36Mb]],deletion TBCEL NA SORL1 NA NA Oncogene NA NA NA +11:121024291 11:121625085 TBCEL--SORL1 BS_BWBDH9GM ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr11:0.36Mb]],deletion TBCEL NA SORL1 NA NA Oncogene NA NA NA +11:121024154 11:121625085 TBCEL--SORL1 BS_BWBDH9GM ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.36Mb]],deletion TBCEL NA SORL1 NA NA Oncogene NA NA NA +11:121024291 11:121622162 TBCEL--SORL1 BS_BWBDH9GM STARFUSION other 29 3 NA [INTRACHROMOSOMAL[chr11:0.36Mb]] TBCEL NA SORL1 NA NA Oncogene NA NA NA +2:221532770 2:221822576 TMEM256P2--AC068489.1(180763)/AC009302.1(121647) BS_BWBDH9GM ARRIBA other 6 0 medium [],duplication TMEM256P2 NA AC068489.1 AC009302.1 NA NA NA NA NA +15:69684442 15:69563116 PCAT29--DRAIC BS_BXXJ9P8C ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +15:69677640 15:69563116 PCAT29--DRAIC BS_BXXJ9P8C ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +15:69631735 15:69548354 PCAT29--DRAIC BS_BXXJ9P8C ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +10:17229380 14:49586598 VIM-AS1--AL139099.5 BS_BXXJ9P8C STARFUSION other 20 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA AL139099.5 NA NA NA NA NA NA +10:17229380 14:49586598 VIM-AS1--RN7SL1 BS_BXXJ9P8C STARFUSION other 20 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_C05FKR8X ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_C05FKR8X ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_C05FKR8X ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_C05FKR8X ARRIBA in-frame 248 35 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662088 C11orf95--RELA BS_C05FKR8X ARRIBA in-frame 32 13 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_C05FKR8X ARRIBA in-frame 35 0 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_C05FKR8X ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_C05FKR8X STARFUSION in-frame 255 43 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_C05FKR8X STARFUSION in-frame 36 43 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +20:54610523 20:54554933 DOK5--DOK5 BS_C05FKR8X ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_C05FKR8X ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +11:83071691 11:76702972 RAB30--AP001189.4 BS_C05FKR8X ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr11:6.27Mb]],inversion RAB30 NA AP001189.4 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_C05FKR8X ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:65112701 19:47909661 TM7SF2--SULT2A1(23264)/BSPH1(58385) BS_C05FKR8X ARRIBA frameshift 1 2 medium [],translocation TM7SF2 NA SULT2A1 BSPH1 NA NA NA NA NA +11:65112701 19:47925753 TM7SF2--SULT2A1(39356)/BSPH1(42293) BS_C05FKR8X ARRIBA frameshift 9 0 low [],translocation TM7SF2 NA SULT2A1 BSPH1 NA NA NA NA NA +14:90578106 14:90786328 TTC7B--TTC7B BS_C05FKR8X ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.29Mb]],duplication/non-canonical_splicing TTC7B NA TTC7B NA NA NA NA NA NA +8:96785330 17:82163357 CPQ--CCDC57 BS_C0XFDP38 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr8--chr17]],translocation CPQ NA CCDC57 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_C0XFDP38 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_C0XFDP38 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +10:75438494 10:112668218 LRMDA--VTI1A BS_C3P5BC92 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:35.89Mb]],deletion LRMDA NA VTI1A NA NA CosmicCensus, Oncogene NA NA NA +10:112668998 10:76036008 VTI1A--LRMDA BS_C3P5BC92 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr10:35.89Mb]],duplication VTI1A NA LRMDA NA CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_C41DJZ1F ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_C41DJZ1F ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:9393647 3:16337112 ASAP2--OXNAD1 BS_C41DJZ1F ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr2--chr3]],translocation ASAP2 NA OXNAD1 NA NA NA NA NA NA +17:80209071 17:78688706 CARD14--CYTH1 BS_C41DJZ1F ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr17:1.39Mb]],inversion CARD14 NA CYTH1 NA NA NA NA NA NA +16:1729578 16:1912205 MAPK8IP3--HS3ST6 BS_C41DJZ1F ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],inversion MAPK8IP3 NA HS3ST6 NA NA NA NA NA NA +16:1729578 16:1939143 MAPK8IP3--MSRB1 BS_C41DJZ1F ARRIBA frameshift 6 2 high [INTRACHROMOSOMAL[chr16:0.17Mb]],inversion MAPK8IP3 NA MSRB1 NA NA NA NA NA NA +2:8908621 3:13626445 MBOAT2--FBLN2 BS_C41DJZ1F ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr2--chr3]],translocation MBOAT2 NA FBLN2 NA NA CosmicCensus NA NA NA +3:16433851 3:12941865 RFTN1--IQSEC1 BS_C41DJZ1F ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr3:3.24Mb]],deletion RFTN1 NA IQSEC1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_C41DJZ1F ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:150624899 13:51758192 SELENOT--WDFY2 BS_C41DJZ1F ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr3--chr13]],translocation SELENOT NA WDFY2 NA NA NA NA NA NA +1:162518190 1:161493455 UHMK1--AL592295.3(22932)/FCGR2A(11975) BS_C41DJZ1F ARRIBA frameshift 2 0 high [],duplication UHMK1 NA AL592295.3 FCGR2A Kinase NA NA NA NA +13:51758300 1:162467443 WDFY2--SLAMF6P1 BS_C41DJZ1F ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr13--chr1]],translocation/5'-5' WDFY2 NA SLAMF6P1 NA NA NA NA NA NA +X:24179770 X:21300945 ZFX--AL807742.1 BS_C41DJZ1F ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chrX:2.77Mb]],inversion ZFX NA AL807742.1 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_C51RB0YR ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_C51RB0YR ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93593359 15:93557472 AC110023.1--AC091078.1 BS_C51RB0YR ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93557472 AC110023.1--AC091078.1 BS_C51RB0YR ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +16:77293076 16:77335904 ADAMTS18--ADAMTS18 BS_C51RB0YR ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.19Mb]],duplication/non-canonical_splicing ADAMTS18 NA ADAMTS18 NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA +6:97828206 6:97742172 AL589740.1--AL589740.1 BS_C51RB0YR ARRIBA other 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:1.12Mb]],duplication AL589740.1 NA AL589740.1 NA NA NA NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_C51RB0YR ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_C51RB0YR ARRIBA frameshift 6 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_C51RB0YR ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_C51RB0YR ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:76856300 8:76833338 ZFHX4--ZFHX4 BS_C51RB0YR ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.19Mb]],duplication/non-canonical_splicing ZFHX4 NA ZFHX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_C6SKJG3N ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_C6SKJG3N ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:48946405 2:48807660 AC009975.1--ELOBP3(26765)/AC009975.1(1680) BS_C6SKJG3N ARRIBA other 1 3 high [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA +17:7656768 14:49862815 ATP1B2--RN7SL2 BS_C6SKJG3N STARFUSION other 16 4 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_C6SKJG3N ARRIBA other 3 1 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_C6SKJG3N ARRIBA in-frame 5 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +9:62806330 9:62818561 LINC01410--LINC01410(5075)/AL512625.2(19187) BS_C6SKJG3N ARRIBA other 2 0 low [],inversion LINC01410 NA LINC01410 AL512625.2 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_C6SKJG3N ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_C6ZZ3FY5 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_C6ZZ3FY5 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_C6ZZ3FY5 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_C6ZZ3FY5 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93498521 AC110023.1--AC091078.1 BS_C6ZZ3FY5 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93557472 AC110023.1--AC091078.1 BS_C6ZZ3FY5 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +1:180397516 1:180506470 ACBD6--ACBD6(3516)/Y_RNA(12546) BS_C6ZZ3FY5 ARRIBA frameshift 2 1 high [],duplication ACBD6 NA ACBD6 Y_RNA NA NA NA NA NA +1:180314692 1:180521767 ACBD6--Y_RNA(2648)/OVAAL(37209) BS_C6ZZ3FY5 ARRIBA frameshift 4 0 high [],duplication ACBD6 NA Y_RNA OVAAL NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_C6ZZ3FY5 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +9:86632268 9:86589809 AL353613.1--RNU2-36P(166681)/AL353613.1(42338) BS_C6ZZ3FY5 ARRIBA other 10 3 high [],duplication AL353613.1 NA RNU2-36P AL353613.1 NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_C6ZZ3FY5 ARRIBA frameshift 8 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_C6ZZ3FY5 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_C6ZZ3FY5 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +4:113374946 3:161727940 ANK2--OTOL1(223998)/AC131211.1(88969) BS_C6ZZ3FY5 ARRIBA other 9 2 high [],translocation ANK2 NA OTOL1 AC131211.1 NA NA NA NA NA +18:79307234 18:79193183 ATP9B--ATP9B BS_C6ZZ3FY5 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_C6ZZ3FY5 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +4:113509638 4:181739487 CAMK2D--AC093840.1(216486)/TEMN3-AS1(80532) BS_C6ZZ3FY5 ARRIBA frameshift 1 1 medium [],inversion CAMK2D NA AC093840.1 TEMN3-AS1 Kinase, Oncogene, Kinase NA NA NA NA +X:96949039 X:96441955 DIAPH2--RN7SKP194(31173)/AL606530.1(178699) BS_C6ZZ3FY5 ARRIBA frameshift 5 0 high [],duplication DIAPH2 NA RN7SKP194 AL606530.1 NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_C6ZZ3FY5 ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +17:18039902 17:62760006 GID4--MARCH10 BS_C6ZZ3FY5 ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr17:44.63Mb]],inversion GID4 NA MARCH10 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_C6ZZ3FY5 ARRIBA frameshift 8 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_C6ZZ3FY5 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_C6ZZ3FY5 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_C6ZZ3FY5 ARRIBA frameshift 8 4 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +14:36070685 14:36063684 LINC00609--AL133304.3 BS_C6ZZ3FY5 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr14:0.01Mb],LOCAL_REARRANGEMENT:+:[6684]],duplication LINC00609 NA AL133304.3 NA NA NA NA NA NA +14:36070685 14:36063684 LINC00609--AL133304.3 BS_C6ZZ3FY5 STARFUSION other 7 0 NA [INTRACHROMOSOMAL[chr14:0.01Mb],LOCAL_REARRANGEMENT:+:[6684]] LINC00609 NA AL133304.3 NA NA NA NA NA NA +4:185055237 4:182714087 LINC02436--TENM3 BS_C6ZZ3FY5 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:2.25Mb]],duplication LINC02436 NA TENM3 NA NA NA NA NA NA +21:16231115 1:149201090 MIR99AHG--AC245297.1 BS_C6ZZ3FY5 ARRIBA other 23 3 high [INTERCHROMOSOMAL[chr21--chr1]],translocation MIR99AHG NA AC245297.1 NA NA NA NA NA NA +21:16181687 1:149201090 MIR99AHG--AC245297.1 BS_C6ZZ3FY5 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr21--chr1]],translocation MIR99AHG NA AC245297.1 NA NA NA NA NA NA +21:16231115 1:149201090 MIR99AHG--AC245297.1 BS_C6ZZ3FY5 STARFUSION other 29 3 NA [INTERCHROMOSOMAL[chr21--chr1]] MIR99AHG NA AC245297.1 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_C6ZZ3FY5 ARRIBA other 3 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +15:69684442 15:69548354 PCAT29--DRAIC BS_C6ZZ3FY5 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_C6ZZ3FY5 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:182714233 4:185054979 TENM3--LINC02436 BS_C6ZZ3FY5 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr4:2.25Mb]],deletion TENM3 NA LINC02436 NA NA NA NA NA NA +4:182714233 4:185071568 TENM3--LINC02436 BS_C6ZZ3FY5 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr4:2.25Mb]],deletion TENM3 NA LINC02436 NA NA NA NA NA NA +4:182714233 4:185069930 TENM3--LINC02436 BS_C6ZZ3FY5 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr4:2.25Mb]],deletion TENM3 NA LINC02436 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_C7A2TYAC ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_C7A2TYAC ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_C7A2TYAC ARRIBA other 9 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_C7A2TYAC ARRIBA other 6 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_C7A2TYAC ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_C7A2TYAC ARRIBA in-frame 17 6 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138861139 7:140787584 KIAA1549--BRAF BS_C7A2TYAC STARFUSION in-frame 13 7 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_C7A2TYAC ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_C7A2TYAC ARRIBA other 10 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_C7N3J4NW ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_C7N3J4NW ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_C7N3J4NW ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_C7N3J4NW ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_C7N3J4NW ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_C7N3J4NW ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_C7N3J4NW ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_C7N3J4NW ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_C7N3J4NW ARRIBA frameshift 17 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +2:231331897 2:231282059 ARMC9--ARMC9 BS_C7N3J4NW ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing ARMC9 NA ARMC9 NA NA NA NA NA NA +X:111330904 X:111333153 DCX--DCX BS_C7N3J4NW ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.12Mb]],duplication/non-canonical_splicing DCX NA DCX NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_C7N3J4NW ARRIBA frameshift 25 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +X:47649921 X:47652144 ELK1--UXT BS_C7N3J4NW ARRIBA other 2 0 low [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:-:[1194]],duplication ELK1 NA UXT NA Oncogene, TranscriptionFactor NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_C7N3J4NW ARRIBA in-frame 36 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:74492266 1:74439490 FPGT-TNNI3K--FPGT-TNNI3K BS_C7N3J4NW ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_C7N3J4NW ARRIBA frameshift 4 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +7:43501322 7:43492075 HECW1--HECW1 BS_C7N3J4NW ARRIBA frameshift 10 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_C7N3J4NW ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_C7N3J4NW ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_C7N3J4NW ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_C7N3J4NW ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_C7N3J4NW ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_C7N3J4NW ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_C7N3J4NW ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_C7N3J4NW ARRIBA frameshift 17 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_C7N3J4NW ARRIBA frameshift 17 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_C7N3J4NW ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_C7N3J4NW ARRIBA frameshift 11 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +8:74612940 8:74500513 MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_C7N3J4NW ARRIBA other 3 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA +8:88056128 8:88167973 MMP16--MMP16 BS_C7N3J4NW ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.30Mb]],duplication/non-canonical_splicing MMP16 NA MMP16 NA NA NA NA NA NA +11:95924100 13:46720560 MTMR2--LRCH1 BS_C7N3J4NW ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr11--chr13]],translocation/3'-3' MTMR2 NA LRCH1 NA NA NA NA NA NA +6:61606290 6:61661364 MTRNR2L9(31888)/AL049544.1(23943)--AL049544.1 BS_C7N3J4NW ARRIBA other 4 1 high [],duplication MTRNR2L9 AL049544.1 AL049544.1 NA NA NA NA NA NA +Y:5100707 Y:5031906 PCDH11Y--PCDH11Y BS_C7N3J4NW ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrY:0.74Mb]],duplication/non-canonical_splicing PCDH11Y NA PCDH11Y NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_C7N3J4NW ARRIBA in-frame 13 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_C7N3J4NW ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_C7N3J4NW ARRIBA other 6 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +2:134550570 2:134869041 TMEM163--CCNT2-AS1 BS_C7N3J4NW ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA +2:134713200 2:134869041 TMEM163--CCNT2-AS1 BS_C7N3J4NW ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA +1:74492266 1:74439490 TNNI3K--TNNI3K BS_C7N3J4NW ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.31Mb]],duplication/non-canonical_splicing TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_C80S5N37 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_C80S5N37 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_C80S5N37 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_C80S5N37 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_C80S5N37 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +X:36205110 X:36179345 CFAP47--CFAP47 BS_C80S5N37 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_C80S5N37 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_CB6VK7PB ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_CB6VK7PB ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_CB6VK7PB ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +1:171251523 1:170807604 AL445673.1--PRRX1(68185)/MROH9(127867) BS_CB6VK7PB ARRIBA other 2 3 high [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_CB6VK7PB ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_CB6VK7PB ARRIBA in-frame 8 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +2:149486345 2:149449049 LYPD6(12197)/MMADHC(83289)--LYPD6 BS_CB6VK7PB ARRIBA other 2 1 high [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_CB6VK7PB ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:216712469 2:217261660 AC007563.2--RN7SKP43(9785)/DIRC3-AS1(21079) BS_CGB2WS2A ARRIBA other 1 0 low [],deletion AC007563.2 NA RN7SKP43 DIRC3-AS1 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_CGB2WS2A ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_CGB2WS2A ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:48946405 2:48807660 AC009975.1--ELOBP3(26765)/AC009975.1(1680) BS_CGB2WS2A ARRIBA other 2 1 high [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_CGB2WS2A ARRIBA other 9 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_CGB2WS2A ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_CGB2WS2A ARRIBA in-frame 6 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_CGB2WS2A ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_CGB2WS2A ARRIBA frameshift 15 2 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_CGB2WS2A ARRIBA frameshift 19 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_CGB2WS2A ARRIBA other 4 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_CGB2WS2A ARRIBA other 3 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +14:58512627 14:58482513 KIAA0586--KIAA0586 BS_CGB2WS2A ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing KIAA0586 NA KIAA0586 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_CGB2WS2A ARRIBA in-frame 3 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +2:8201947 2:8245140 LINC00299--LINC00299 BS_CGB2WS2A ARRIBA other 4 1 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_CGB2WS2A ARRIBA other 11 0 high [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +12:15504069 12:15483974 PTPRO--PTPRO BS_CGB2WS2A ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRO NA PTPRO NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_CGB2WS2A ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_CGB2WS2A ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:108934195 12:108945166 SVOP--SVOP BS_CGB2WS2A ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.11Mb]],duplication/non-canonical_splicing SVOP NA SVOP NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_CHDGRYHJ STARFUSION other 14 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +9:14596461 9:14680162 CDCA4P1(2261)/ZDHHC21(14610)--ZDHHC21 BS_CHDGRYHJ ARRIBA other 1 2 high [],duplication CDCA4P1 ZDHHC21 ZDHHC21 NA NA NA NA NA NA +22:43667104 22:43711623 EFCAB6--EFCAB6 BS_CHDGRYHJ ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr22:0.28Mb]],duplication/non-canonical_splicing EFCAB6 NA EFCAB6 NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_CHDGRYHJ ARRIBA frameshift 22 14 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +13:32079033 13:31946009 FRY--EEF1DP3 BS_CHDGRYHJ ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr13:0.08Mb],LOCAL_REARRANGEMENT:+:[77828]],duplication FRY NA EEF1DP3 NA NA NA NA NA NA +7:8060248 7:8003908 GLCCI1--AC007161.3 BS_CHDGRYHJ ARRIBA frameshift 7 3 medium [],duplication GLCCI1 NA AC007161.3 NA NA NA NA NA NA +7:8024814 7:8003908 GLCCI1--AC007161.3 BS_CHDGRYHJ ARRIBA in-frame 9 1 medium [],duplication GLCCI1 NA AC007161.3 NA NA NA NA NA NA +7:8071131 7:8003908 GLCCI1--AC007161.3 BS_CHDGRYHJ ARRIBA in-frame 6 3 medium [],duplication GLCCI1 NA AC007161.3 NA NA NA NA NA NA +7:8022569 7:8003908 GLCCI1--AC007161.3 BS_CHDGRYHJ ARRIBA frameshift 6 1 medium [],duplication GLCCI1 NA AC007161.3 NA NA NA NA NA NA +7:8004059 7:7801670 GLCCI1--AC007161.3 BS_CHDGRYHJ ARRIBA frameshift 1 1 medium [],duplication GLCCI1 NA AC007161.3 NA NA NA NA NA NA +5:135671747 5:135629237 LINC01959(17812)/AC011431.1(70715)--AC034206.1 BS_CHDGRYHJ ARRIBA other 3 0 medium [],duplication LINC01959 AC011431.1 AC034206.1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_CHDGRYHJ ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +4:103656194 4:103658403 TACR3--TACR3 BS_CHDGRYHJ ARRIBA frameshift 18 2 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA +4:16323036 4:16288884 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_CHDGRYHJ ARRIBA other 3 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +1:216175252 1:216207431 USH2A--USH2A BS_CHDGRYHJ ARRIBA in-frame 53 12 high [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +10:21369967 10:21172477 AL158209.1--NEBL BS_CQEETJ66 STARFUSION other 16 1 NA [INTRACHROMOSOMAL[chr10:0.17Mb]] AL158209.1 NA NEBL NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_CQSAJ7BF ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_CQSAJ7BF ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +X:33725628 X:33020200 AL050305.1(313455)/AL591501.1(880)--DMD BS_CQSAJ7BF ARRIBA other 3 0 high [],deletion AL050305.1 AL591501.1 DMD NA NA TumorSuppressorGene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_CQSAJ7BF ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_CQSAJ7BF ARRIBA frameshift 10 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_CQSAJ7BF ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_CQSAJ7BF ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_CQSAJ7BF ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_CQSAJ7BF ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_CQSAJ7BF ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_CQSAJ7BF ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_CQSAJ7BF ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_CQSAJ7BF ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_CQSAJ7BF ARRIBA frameshift 19 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_CQSAJ7BF ARRIBA in-frame 46 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_CQSAJ7BF ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_CQSAJ7BF ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_CQSAJ7BF ARRIBA in-frame 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_CQSAJ7BF ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210797508 1:211090690 KCNH1--AL590132.1 BS_CQSAJ7BF ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_CQSAJ7BF ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_CQSAJ7BF ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_CQSAJ7BF ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:211019256 KCNH1--AL590132.1 BS_CQSAJ7BF ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_CQSAJ7BF ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_CQSAJ7BF ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_CQSAJ7BF ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_CQSAJ7BF ARRIBA frameshift 10 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_CQSAJ7BF ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_CQSAJ7BF ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +12:27762965 12:27714780 MANSC4--MRPS35 BS_CQSAJ7BF ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_INVERSION:-:+:[6443]],duplication/3'-3' MANSC4 NA MRPS35 NA NA NA NA NA NA +15:56429086 15:56466288 MNS1--MNS1(1151)/AC090518.1(76664) BS_CQSAJ7BF ARRIBA frameshift 3 0 high [],duplication MNS1 NA MNS1 AC090518.1 NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_CQSAJ7BF ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_CQSAJ7BF ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:167575918 3:167664448 WDR49--WDR49(10465)/PDCD10(18850) BS_CQSAJ7BF ARRIBA frameshift 1 1 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_CREQ97QC ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_CREQ97QC ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_CREQ97QC ARRIBA other 9 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +12:19944544 12:19650396 AC024901.1--AEBP2 BS_CREQ97QC ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr12:0.05Mb],LOCAL_REARRANGEMENT:+:[54650]],duplication AC024901.1 NA AEBP2 NA NA TranscriptionFactor NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_CREQ97QC ARRIBA other 5 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_CREQ97QC ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_CREQ97QC ARRIBA frameshift 12 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_CREQ97QC ARRIBA frameshift 18 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_CREQ97QC ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_CREQ97QC ARRIBA frameshift 6 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_CREQ97QC ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_CREQ97QC ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_CREQ97QC ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_CREQ97QC ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211103602 AL590132.1--KCNH1 BS_CREQ97QC ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_CREQ97QC ARRIBA frameshift 17 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +5:61755944 5:61686883 C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_CREQ97QC ARRIBA other 2 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +3:2903005 3:2883145 CNTN4--CNTN4 BS_CREQ97QC ARRIBA in-frame 6 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_CREQ97QC ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +14:53058477 14:53091932 DDHD1--DDHD1 BS_CREQ97QC ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing DDHD1 NA DDHD1 NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_CREQ97QC ARRIBA frameshift 5 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +7:154053063 7:149891301 DPP6--AC092681.1 BS_CREQ97QC ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:3.98Mb]],inversion DPP6 NA AC092681.1 NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_CREQ97QC ARRIBA in-frame 9 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_CREQ97QC ARRIBA in-frame 92 13 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_CREQ97QC ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +10:121483698 10:103287035 FGFR2--INA BS_CREQ97QC ARRIBA in-frame 116 6 high [INTRACHROMOSOMAL[chr10:18.19Mb]],inversion FGFR2 NA INA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +10:121483698 10:103287035 FGFR2--INA BS_CREQ97QC STARFUSION in-frame 118 7 NA [INTRACHROMOSOMAL[chr10:18.19Mb]] FGFR2 NA INA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +2:31114743 2:31132712 GALNT14--GALNT14 BS_CREQ97QC ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.24Mb]],duplication/non-canonical_splicing GALNT14 NA GALNT14 NA NA NA NA NA NA +9:101670060 9:101687200 GRIN3A--GRIN3A BS_CREQ97QC ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.17Mb]],duplication/non-canonical_splicing GRIN3A NA GRIN3A NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_CREQ97QC ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_CREQ97QC ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_CREQ97QC ARRIBA frameshift 18 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_CREQ97QC ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_CREQ97QC ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_CREQ97QC ARRIBA frameshift 6 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_CREQ97QC ARRIBA frameshift 12 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_CREQ97QC ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:211090690 KCNH1--AL590132.1 BS_CREQ97QC ARRIBA frameshift 1 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_CREQ97QC ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_CREQ97QC ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_CREQ97QC ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211082898 KCNH1--AL590132.1 BS_CREQ97QC ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211103602 KCNH1--AL590132.1 BS_CREQ97QC ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_CREQ97QC ARRIBA frameshift 18 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_CREQ97QC ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +3:178859489 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_CREQ97QC ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_CREQ97QC ARRIBA frameshift 11 3 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +8:89418044 8:89725641 KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_CREQ97QC ARRIBA other 3 0 high [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +2:8054865 2:8392968 LINC00299--LINC00299(9347)/AC011747.2(150624) BS_CREQ97QC ARRIBA other 1 1 medium [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_CREQ97QC ARRIBA other 8 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_CREQ97QC ARRIBA other 4 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_CREQ97QC ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +17:6525356 17:6590630 PITPNM3--KIAA0753 BS_CREQ97QC ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_CREQ97QC ARRIBA in-frame 24 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_CREQ97QC ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_CREQ97QC ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_CREQ97QC ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_CREQ97QC ARRIBA other 6 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +12:21292164 12:21304573 SLCO1A2--SLCO1A2 BS_CREQ97QC ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA +8:50502880 8:50438543 SNTG1--SNTG1 BS_CREQ97QC ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_CREQ97QC ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +10:102744143 10:121313361 WBP1L--LINC01153(127395)/RN7SKP167(97555) BS_CREQ97QC ARRIBA frameshift 3 0 high [],inversion WBP1L NA LINC01153 RN7SKP167 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_CS170P7T ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_CS170P7T ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:178748404 3:178943850 KCNMB2-AS1--KCNMB2-AS1(83445)/ZMAT3(73373) BS_CS170P7T ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_CS170P7T ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:49586869 14:20343403 AL139099.5--AL355075.4 BS_CS66RYDA STARFUSION other 5 14 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586856 14:20343232 AL139099.5--AL355075.4 BS_CS66RYDA STARFUSION other 4 14 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586867 14:20343399 AL139099.5--RPPH1 BS_CS66RYDA STARFUSION other 5 14 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +14:49586856 14:20343232 AL139099.5--RPPH1 BS_CS66RYDA STARFUSION other 4 14 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +14:49586873 14:20343400 RN7SL1--AL355075.4 BS_CS66RYDA STARFUSION other 5 14 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586856 14:20343232 RN7SL1--AL355075.4 BS_CS66RYDA STARFUSION other 4 14 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586869 14:20343403 RN7SL1--RPPH1 BS_CS66RYDA STARFUSION other 5 14 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +14:49586856 14:20343232 RN7SL1--RPPH1 BS_CS66RYDA STARFUSION other 4 14 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +14:49862573 6:52995632 RN7SL2--RN7SK BS_CS66RYDA STARFUSION other 4 9 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL2 NA RN7SK NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_CTR5X93B ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_CTR5X93B ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_CTR5X93B ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_CTR5X93B STARFUSION other 10 20 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_CTR5X93B ARRIBA other 7 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178801793 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_CTR5X93B ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_CTR5X93B ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_CTR5X93B ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:51794641 12:51786542 SCN8A--SCN8A BS_CTR5X93B ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.22Mb]],duplication/non-canonical_splicing SCN8A NA SCN8A NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_CTR5X93B ARRIBA other 9 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +3:9032650 3:12600415 SRGAP3--RAF1 BS_CTR5X93B ARRIBA in-frame 4 1 high [Cosmic,ChimerSeq,ChimerKB,INTRACHROMOSOMAL[chr3:3.33Mb]],duplication SRGAP3 NA RAF1 NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +6:52995907 14:49862790 7SK--RN7SL2 BS_CVGFNCBJ STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995859 14:49862651 7SK--RN7SL2 BS_CVGFNCBJ STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995906 14:49862746 7SK--RN7SL2 BS_CVGFNCBJ STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_CVGFNCBJ ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_CVGFNCBJ ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_CVGFNCBJ ARRIBA frameshift 9 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_CVGFNCBJ ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_CVGFNCBJ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_CVGFNCBJ ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_CVGFNCBJ ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_CVGFNCBJ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_CVGFNCBJ ARRIBA other 5 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_CVGFNCBJ ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_CVGFNCBJ ARRIBA in-frame 24 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_CVGFNCBJ ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_CVGFNCBJ ARRIBA frameshift 3 1 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_CVGFNCBJ ARRIBA frameshift 9 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_CVGFNCBJ ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_CVGFNCBJ ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_CVGFNCBJ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_CVGFNCBJ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_CVGFNCBJ ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_CVGFNCBJ ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_CVGFNCBJ ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_CVGFNCBJ ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +2:8382200 2:8392968 LINC00299--LINC00299(9347)/AC011747.2(150624) BS_CVGFNCBJ ARRIBA other 2 0 low [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_CVGFNCBJ ARRIBA other 3 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +2:1839149 2:1892287 MYT1L--MYT1L BS_CVGFNCBJ ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +17:6525356 17:6590630 PITPNM3--KIAA0753 BS_CVGFNCBJ ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_CVGFNCBJ ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +14:49862563 6:52995635 RN7SL2--RN7SK BS_CVGFNCBJ STARFUSION other 4 9 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL2 NA RN7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_CVGFNCBJ ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_CVGFNCBJ ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +8:50502880 8:50438543 SNTG1--SNTG1 BS_CVGFNCBJ ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_CW9QV8AG ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_CW9QV8AG ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:231331897 2:231282059 ARMC9--ARMC9 BS_CW9QV8AG ARRIBA in-frame 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing ARMC9 NA ARMC9 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_CW9QV8AG ARRIBA in-frame 30 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:74492266 1:74439490 FPGT-TNNI3K--FPGT-TNNI3K BS_CW9QV8AG ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_CW9QV8AG ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_CW9QV8AG ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_CW9QV8AG ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_CW9QV8AG ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_CW9QV8AG ARRIBA other 5 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_CW9QV8AG ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_CW9QV8AG ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:130288227 6:130313093 SAMD3--SAMD3 BS_CW9QV8AG ARRIBA other 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA +4:16323036 4:16256257 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_CW9QV8AG ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_CW9QV8AG ARRIBA other 4 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +10:131260259 10:131309299 TCERG1L--TCERG1L BS_CW9QV8AG ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_CXVGG342 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +1:77068843 1:77061012 AL035409.1--ST6GALNAC5 BS_CXVGG342 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:+:[2209]],duplication AL035409.1 NA ST6GALNAC5 NA NA NA NA NA NA +12:122288489 6:117320030 CLIP1--ROS1 BS_CXVGG342 ARRIBA in-frame 10 0 medium [ChimerKB,Cosmic,INTERCHROMOSOMAL[chr12--chr6]],translocation CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA +12:13753317 12:13753915 GRIN2B--GRIN2B BS_CXVGG342 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.54Mb]],duplication/non-canonical_splicing GRIN2B NA GRIN2B NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_CXVGG342 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +4:129253401 4:129780010 AC105417.1(74307)/AC082650.1(45774)--LINC02465 BS_CXVJK2FY ARRIBA other 13 0 high [],deletion AC105417.1 AC082650.1 LINC02465 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_CXVJK2FY ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +6:167962567 6:167914168 AFDN--AFDN BS_CXVJK2FY ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.15Mb]],duplication/non-canonical_splicing AFDN NA AFDN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +4:99288785 4:99133555 AP002026.1--AP002026.1 BS_CXVJK2FY ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.21Mb]],duplication/non-canonical_splicing AP002026.1 NA AP002026.1 NA NA NA NA NA NA +4:78865720 4:78850924 BMP2K--BMP2K BS_CXVJK2FY ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.14Mb]],duplication/non-canonical_splicing BMP2K NA BMP2K NA Kinase Kinase NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_CXVJK2FY ARRIBA in-frame 82 0 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_CXVJK2FY ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_CXVJK2FY STARFUSION in-frame 83 0 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +5:24491576 5:24505248 CDH10--CDH10 BS_CXVJK2FY ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +15:92974950 15:92955423 CHD2--CHD2 BS_CXVJK2FY ARRIBA in-frame 25 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +13:39689824 13:39687503 COG6--COG6 BS_CXVJK2FY ARRIBA frameshift 11 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.14Mb]],duplication/non-canonical_splicing COG6 NA COG6 NA NA NA NA NA NA +2:195816628 2:195853528 DNAH7--DNAH7 BS_CXVJK2FY ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA +6:24445546 6:24543989 GPLD1--ALDH5A1(6782)/KIAA0319(115) BS_CXVJK2FY ARRIBA frameshift 1 0 low [],duplication GPLD1 NA ALDH5A1 KIAA0319 NA NA NA NA NA +14:58512627 14:58450579 KIAA0586--KIAA0586 BS_CXVJK2FY ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing KIAA0586 NA KIAA0586 NA NA NA NA NA NA +14:50443729 14:50466645 MAP4K5--MAP4K5 BS_CXVJK2FY ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing MAP4K5 NA MAP4K5 NA Kinase Kinase NA NA NA +14:100942838 14:100913432 MEG8--MEG8 BS_CXVJK2FY ARRIBA other 37 5 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA +3:27115940 3:27141582 NEK10--NEK10 BS_CXVJK2FY ARRIBA frameshift 2 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr3:0.26Mb]],duplication/non-canonical_splicing NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_CXVJK2FY ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +1:58527261 1:58539310 OMA1--OMA1 BS_CXVJK2FY ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing OMA1 NA OMA1 NA NA NA NA NA NA +3:146909590 3:146926650 PLSCR5(303374)/AC092957.1(95)--AC092957.1 BS_CXVJK2FY ARRIBA other 2 0 low [],duplication PLSCR5 AC092957.1 AC092957.1 NA NA NA NA NA NA +8:68121049 8:68115753 PREX2--PREX2 BS_CXVJK2FY ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.28Mb]],duplication/non-canonical_splicing PREX2 NA PREX2 NA CosmicCensus CosmicCensus NA NA NA +20:38532859 20:38521497 RALGAPB--RALGAPB BS_CXVJK2FY ARRIBA in-frame 5 2 low [SELFIE,INTRACHROMOSOMAL[chr20:0.11Mb]],duplication/non-canonical_splicing RALGAPB NA RALGAPB NA NA NA NA NA NA +4:106242470 4:106252007 TBCK--TBCK BS_CXVJK2FY ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr4:0.28Mb]],duplication/non-canonical_splicing TBCK NA TBCK NA Kinase, Kinase Kinase, Kinase NA NA NA +15:43024829 15:43048491 UBR1--UBR1 BS_CXVJK2FY ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.16Mb]],duplication/non-canonical_splicing UBR1 NA UBR1 NA NA NA NA NA NA +1:55145998 1:55148570 USP24--USP24 BS_CXVJK2FY ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing USP24 NA USP24 NA Oncogene Oncogene NA NA NA +7:110432811 7:109841570 AC092167.1--AC073387.2(77213)/EIF3IP1(117648) BS_CYEY58NY ARRIBA other 3 0 medium [],deletion AC092167.1 NA AC073387.2 EIF3IP1 NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_CYEY58NY ARRIBA other 14 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +5:91102340 5:90781430 ADGRV1--ADGRV1 BS_CYEY58NY ARRIBA frameshift 23 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +9:82496858 9:82923607 AL162726.3--AL162726.3(143413)/RASEF(55978) BS_CYEY58NY ARRIBA other 14 0 high [],deletion AL162726.3 NA AL162726.3 RASEF NA NA NA NA NA +2:27558009 5:79130933 C2orf16--BHMT BS_CYEY58NY ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr2--chr5]],translocation/3'-3' C2orf16 NA BHMT NA NA NA NA NA NA +8:43180201 5:79130933 HGSNAT--BHMT BS_CYEY58NY ARRIBA other 50 5 high [INTERCHROMOSOMAL[chr8--chr5]],translocation/3'-3' HGSNAT NA BHMT NA NA NA NA NA NA +14:59475869 14:59565275 L3HYPDH--CCDC175 BS_CYEY58NY ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59568380 L3HYPDH--CCDC175 BS_CYEY58NY ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59551436 L3HYPDH--CCDC175 BS_CYEY58NY ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59538840 L3HYPDH--CCDC175 BS_CYEY58NY ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_CYEY58NY ARRIBA other 14 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +17:30980468 5:79130933 RNF135--BHMT BS_CYEY58NY ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr17--chr5]],translocation/3'-3' RNF135 NA BHMT NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_CYEY58NY ARRIBA other 12 1 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_CYEY58NY ARRIBA other 5 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +12:27958606 12:28133252 AC008011.2--CCDC91 BS_CZ3ER8DY STARFUSION other 9 1 NA [INTRACHROMOSOMAL[chr12:0.16Mb]] AC008011.2 NA CCDC91 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_CZ3ER8DY ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_CZ3ER8DY ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_CZ3ER8DY ARRIBA other 5 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_CZ3ER8DY STARFUSION other 18 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_CZ3ER8DY ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_CZ3ER8DY ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46492682 20:46504740 AL031686.1--ZNF334 BS_CZ3ER8DY ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +1:155063936 11:65665421 AL691442.1--RELA(2327)/RN7SL309P(30131) BS_CZ3ER8DY ARRIBA frameshift 3 2 high [],translocation AL691442.1 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_CZ3ER8DY ARRIBA in-frame 88 1 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_CZ3ER8DY ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_CZ3ER8DY STARFUSION in-frame 90 1 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +15:92974950 15:92955423 CHD2--CHD2 BS_CZ3ER8DY ARRIBA in-frame 10 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +2:195816628 2:195853528 DNAH7--DNAH7 BS_CZ3ER8DY ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA +1:155063936 11:65665421 EFNA4--RELA(2327)/RN7SL309P(30131) BS_CZ3ER8DY ARRIBA frameshift 3 2 high [],translocation EFNA4 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA +11:67231960 11:98532540 KDM2A--AP001317.1(401342)/AP003038.1(32534) BS_CZ3ER8DY ARRIBA frameshift 8 1 high [],deletion KDM2A NA AP001317.1 AP003038.1 TranscriptionFactor NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_CZ3ER8DY ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96937393 12:96784717 NEDD1--CFAP54 BS_CZ3ER8DY ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96920125 12:96817775 NEDD1--CFAP54 BS_CZ3ER8DY ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +3:27115940 3:27141582 NEK10--NEK10 BS_CZ3ER8DY ARRIBA frameshift 5 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr3:0.26Mb]],duplication/non-canonical_splicing NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA +14:26472320 14:26480143 NOVA1--NOVA1 BS_CZ3ER8DY ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing NOVA1 NA NOVA1 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_CZ3ER8DY ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +10:94032252 10:94005450 PLCE1--PIPSL(43910)/PLCE1(25362) BS_CZ3ER8DY ARRIBA frameshift 2 3 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +1:229313760 1:229286486 RAB4A(7866)/AL117350.1(5643)--RAB4A BS_CZ3ER8DY ARRIBA other 4 0 medium [],duplication RAB4A AL117350.1 RAB4A NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_CZ3ER8DY ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +19:893592 11:62665431 RNU6-9--METTL12 BS_CZ3ER8DY STARFUSION other 19 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--SNORA57 BS_CZ3ER8DY STARFUSION other 19 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_CZ3ER8DY ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_CZ3ER8DY ARRIBA frameshift 6 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +11:77842628 11:45141997 AAMDC--PRDM11 BS_CZ3NA7KV ARRIBA frameshift 8 1 high [INTRACHROMOSOMAL[chr11:32.59Mb]],inversion/3'-3' AAMDC NA PRDM11 NA NA TumorSuppressorGene NA NA NA +3:167088127 3:167282495 AC092965.1(21807)/ZBBX(152160)--ZBBX BS_CZ3NA7KV ARRIBA other 2 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +1:77068843 1:77044204 AL035409.1--ST6GALNAC5 BS_CZ3NA7KV STARFUSION other 8 1 NA [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:+:[2209]] AL035409.1 NA ST6GALNAC5 NA NA NA NA NA NA +11:46700551 11:64800826 ARHGAP1--MAP4K2 BS_CZ3NA7KV ARRIBA other 18 0 medium [INTRACHROMOSOMAL[chr11:18.08Mb]],duplication ARHGAP1 NA MAP4K2 NA NA Oncogene, Kinase NA NA NA +11:46700551 11:64800826 ARHGAP1--MAP4K2 BS_CZ3NA7KV STARFUSION other 18 0 NA [INTRACHROMOSOMAL[chr11:18.08Mb]] ARHGAP1 NA MAP4K2 NA NA Oncogene, Kinase NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_CZ3NA7KV ARRIBA in-frame 47 0 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_CZ3NA7KV ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_CZ3NA7KV STARFUSION in-frame 50 0 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +12:75282251 12:75323222 CAPS2--CAPS2 BS_CZ3NA7KV ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.11Mb]],duplication/non-canonical_splicing CAPS2 NA CAPS2 NA NA NA NA NA NA +15:92974950 15:92955423 CHD2--CHD2 BS_CZ3NA7KV ARRIBA in-frame 21 4 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +11:68081404 11:18616989 CHKA--SPTY2D1 BS_CZ3NA7KV ARRIBA in-frame 6 3 high [INTRACHROMOSOMAL[chr11:49.42Mb]],deletion CHKA NA SPTY2D1 NA Oncogene, Kinase NA NA NA NA +11:68097019 11:18616989 CHKA--SPTY2D1 BS_CZ3NA7KV ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:49.42Mb]],deletion CHKA NA SPTY2D1 NA Oncogene, Kinase NA NA NA NA +11:68081404 11:18616989 CHKA--SPTY2D1 BS_CZ3NA7KV STARFUSION in-frame 6 3 NA [INTRACHROMOSOMAL[chr11:49.42Mb]] CHKA NA SPTY2D1 NA Oncogene, Kinase NA NA NA NA +3:33570727 3:33592496 CLASP2--CLASP2 BS_CZ3NA7KV ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.22Mb]],duplication/non-canonical_splicing CLASP2 NA CLASP2 NA NA NA NA NA NA +15:51463379 15:51476719 DMXL2--DMXL2 BS_CZ3NA7KV ARRIBA frameshift 5 2 low [SELFIE,INTRACHROMOSOMAL[chr15:0.18Mb]],duplication/non-canonical_splicing DMXL2 NA DMXL2 NA NA NA NA NA NA +7:21588636 7:21570069 DNAH11--DNAH11 BS_CZ3NA7KV ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.36Mb]],duplication/non-canonical_splicing DNAH11 NA DNAH11 NA NA NA NA NA NA +2:195881795 2:195907009 DNAH7--DNAH7 BS_CZ3NA7KV ARRIBA in-frame 9 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA +11:103134419 11:103117631 DYNC2H1--DYNC2H1 BS_CZ3NA7KV ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.37Mb]],duplication/non-canonical_splicing DYNC2H1 NA DYNC2H1 NA NA NA NA NA NA +16:71184865 16:71211998 HYDIN--HYDIN BS_CZ3NA7KV ARRIBA frameshift 6 0 medium [SELFIE,INTRACHROMOSOMAL[chr16:0.42Mb]],duplication HYDIN NA HYDIN NA NA NA NA NA NA +21:45293522 21:45289351 LINC00205--BX322557.1 BS_CZ3NA7KV STARFUSION other 10 0 NA [INTRACHROMOSOMAL[chr21:0.00Mb],LOCAL_REARRANGEMENT:+:[1547]] LINC00205 NA BX322557.1 NA NA NA NA NA NA +10:88132553 10:88602576 MED6P1(82730)/AL353149.1(126576)--LIPJ BS_CZ3NA7KV ARRIBA other 5 1 high [],deletion MED6P1 AL353149.1 LIPJ NA NA NA NA NA NA +11:64807715 11:24434475 MEN1--AC015771.1(172257)/Y_RNA(21436) BS_CZ3NA7KV ARRIBA frameshift 13 2 medium [],deletion MEN1 NA AC015771.1 Y_RNA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +1:11121246 1:11130777 MTOR--MTOR BS_CZ3NA7KV ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.16Mb]],duplication/non-canonical_splicing MTOR NA MTOR NA CosmicCensus, Oncogene, Kinase CosmicCensus, Oncogene, Kinase NA NA NA +11:19351027 11:126562912 NAV2--KIRREL3 BS_CZ3NA7KV ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr11:106.30Mb]],inversion NAV2 NA KIRREL3 NA NA NA NA NA NA +18:46820933 18:46844839 PIAS2--PIAS2 BS_CZ3NA7KV ARRIBA frameshift 4 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.12Mb]],duplication/non-canonical_splicing PIAS2 NA PIAS2 NA NA NA NA NA NA +18:62072673 18:62102902 PIGN--PIGN BS_CZ3NA7KV ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.28Mb]],duplication/non-canonical_splicing PIGN NA PIGN NA NA NA NA NA NA +19:893593 11:62665431 RNU6-9--METTL12 BS_CZ3NA7KV STARFUSION other 8 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893593 11:62665431 RNU6-9--SNORA57 BS_CZ3NA7KV STARFUSION other 8 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +11:63681778 11:108227595 RTN3--ATM BS_CZ3NA7KV ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr11:44.46Mb]],deletion RTN3 NA ATM NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +11:35418950 11:7986898 SLC1A2--EIF3F BS_CZ3NA7KV ARRIBA frameshift 8 1 high [INTRACHROMOSOMAL[chr11:27.25Mb]],inversion SLC1A2 NA EIF3F NA NA TumorSuppressorGene, Oncogene NA NA NA +11:35418950 11:7987353 SLC1A2--EIF3F BS_CZ3NA7KV ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr11:27.25Mb]],inversion SLC1A2 NA EIF3F NA NA TumorSuppressorGene, Oncogene NA NA NA +11:35418950 11:7986898 SLC1A2--EIF3F BS_CZ3NA7KV STARFUSION other 15 2 NA [INTRACHROMOSOMAL[chr11:27.25Mb]] SLC1A2 NA EIF3F NA NA TumorSuppressorGene, Oncogene NA NA NA +11:35418950 11:7987353 SLC1A2--EIF3F BS_CZ3NA7KV STARFUSION frameshift 6 2 NA [INTRACHROMOSOMAL[chr11:27.25Mb]] SLC1A2 NA EIF3F NA NA TumorSuppressorGene, Oncogene NA NA NA +1:118039292 1:118087008 SPAG17--SPAG17 BS_CZ3NA7KV ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing SPAG17 NA SPAG17 NA NA NA NA NA NA +11:85707429 11:68070857 SYTL2--CHKA BS_CZ3NA7KV ARRIBA in-frame 5 2 high [INTRACHROMOSOMAL[chr11:17.57Mb]],deletion SYTL2 NA CHKA NA NA Oncogene, Kinase NA NA NA +11:85707429 11:68070857 SYTL2--CHKA BS_CZ3NA7KV STARFUSION in-frame 5 2 NA [INTRACHROMOSOMAL[chr11:17.57Mb]] SYTL2 NA CHKA NA NA Oncogene, Kinase NA NA NA +4:106242470 4:106252007 TBCK--TBCK BS_CZ3NA7KV ARRIBA frameshift 5 2 low [SELFIE,INTRACHROMOSOMAL[chr4:0.28Mb]],duplication/non-canonical_splicing TBCK NA TBCK NA Kinase, Kinase Kinase, Kinase NA NA NA +15:50589592 15:50609961 TRPM7--TRPM7 BS_CZ3NA7KV ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing TRPM7 NA TRPM7 NA Kinase Kinase NA NA NA +1:55145998 1:55148570 USP24--USP24 BS_CZ3NA7KV ARRIBA frameshift 9 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing USP24 NA USP24 NA Oncogene Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_CZ82ANWP ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_CZ82ANWP ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_CZ82ANWP ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_CZ82ANWP ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_CZ82ANWP ARRIBA frameshift 12 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_CZ82ANWP ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_CZ82ANWP ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_CZ82ANWP ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_CZ82ANWP ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_CZ82ANWP ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +5:61755944 5:61686883 C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_CZ82ANWP ARRIBA other 5 0 medium [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_CZ82ANWP ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_CZ82ANWP ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +2:195972242 2:196069137 DNAH7--DNAH7(325)/STK17B(64429) BS_CZ82ANWP ARRIBA frameshift 1 1 medium [],duplication DNAH7 NA DNAH7 STK17B NA NA NA Kinase NA +3:55683794 3:55992250 ERC2--ERC2 BS_CZ82ANWP ARRIBA in-frame 12 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_CZ82ANWP ARRIBA other 16 2 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_CZ82ANWP ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_CZ82ANWP ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_CZ82ANWP ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_CZ82ANWP ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_CZ82ANWP ARRIBA frameshift 12 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_CZ82ANWP ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_CZ82ANWP ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_CZ82ANWP ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_CZ82ANWP ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +22:39230084 12:57138459 PDGFB--LRP1 BS_CZ82ANWP ARRIBA in-frame 137 17 high [INTERCHROMOSOMAL[chr22--chr12]],translocation PDGFB NA LRP1 NA CosmicCensus, Oncogene NA NA NA NA +22:39230084 12:57138459 PDGFB--LRP1 BS_CZ82ANWP STARFUSION in-frame 140 17 NA [INTERCHROMOSOMAL[chr22--chr12]] PDGFB NA LRP1 NA CosmicCensus, Oncogene NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_CZ82ANWP ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_CZ82ANWP ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:66690316 1:66677004 SGIP1--SGIP1 BS_CZ82ANWP ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SGIP1 NA SGIP1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_D0BGESQF ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_D0BGESQF ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:103893875 11:104000255 AP002989.1--PDGFD BS_D0BGESQF ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11915]],duplication AP002989.1 NA PDGFD NA NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_D0BGESQF ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +14:49862575 14:20343398 RN7SL2--AL355075.4 BS_D0BGESQF STARFUSION other 8 12 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862557 14:20343377 RN7SL2--AL355075.4 BS_D0BGESQF STARFUSION other 7 12 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862562 14:20343341 RN7SL2--AL355075.4 BS_D0BGESQF STARFUSION other 7 12 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862559 14:20343398 RN7SL2--AL355075.4 BS_D0BGESQF STARFUSION other 5 12 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862573 14:20343272 RN7SL2--AL355075.4 BS_D0BGESQF STARFUSION other 4 12 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862574 14:20343397 RN7SL2--RPPH1 BS_D0BGESQF STARFUSION other 7 12 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862562 14:20343341 RN7SL2--RPPH1 BS_D0BGESQF STARFUSION other 7 12 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862562 14:20343378 RN7SL2--RPPH1 BS_D0BGESQF STARFUSION other 7 12 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862559 14:20343398 RN7SL2--RPPH1 BS_D0BGESQF STARFUSION other 5 12 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862574 14:20343272 RN7SL2--RPPH1 BS_D0BGESQF STARFUSION other 4 12 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862574 14:20343302 RN7SL2--RPPH1 BS_D0BGESQF STARFUSION other 4 12 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862563 14:20343227 RN7SL2--RPPH1 BS_D0BGESQF STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +3:77098340 13:32078834 ROBO2--FRY BS_D0BGESQF ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr3--chr13]],translocation ROBO2 NA FRY NA CosmicCensus NA NA NA NA +11:14364391 11:14498985 RRAS2--AC018523.2 BS_D0BGESQF ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr11:0.13Mb]],duplication RRAS2 NA AC018523.2 NA Oncogene NA NA NA NA +11:14364391 11:14498985 RRAS2--COPB1 BS_D0BGESQF ARRIBA frameshift 2 0 low [Klijn_CellLines,INTRACHROMOSOMAL[chr11:0.08Mb],LOCAL_REARRANGEMENT:-:[78934]],duplication RRAS2 NA COPB1 NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_D0BGESQF ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_D0RDN4K5 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_D0RDN4K5 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_D0RDN4K5 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:210035244 2:210009657 AC007038.1--RPE BS_D144EJRQ ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_D144EJRQ ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_D144EJRQ ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_D144EJRQ ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +2:86526566 9:27941031 CHMP3--AL353746.1 BS_D144EJRQ ARRIBA other 4 0 low [INTERCHROMOSOMAL[chr2--chr9]],translocation CHMP3 NA AL353746.1 NA NA NA NA NA NA +12:68824650 19:48211762 MDM2--CARD8 BS_D144EJRQ ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr12--chr19]],translocation MDM2 NA CARD8 NA CosmicCensus, Oncogene Oncogene NA NA NA +8:84185014 8:128119421 RALYL--PVT1(18168)/MIR1208(30695) BS_D144EJRQ ARRIBA frameshift 2 0 medium [],inversion RALYL NA PVT1 MIR1208 NA Oncogene NA NA NA +8:84184424 8:128149371 RALYL--PVT1(48118)/MIR1208(745) BS_D144EJRQ ARRIBA other 21 0 high [],inversion RALYL NA PVT1 MIR1208 NA Oncogene NA NA NA +2:86526566 9:27941031 RNF103-CHMP3--AL353746.1 BS_D144EJRQ ARRIBA other 4 0 low [INTERCHROMOSOMAL[chr2--chr9]],translocation RNF103-CHMP3 NA AL353746.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_D144EJRQ ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_D29RPBSZ ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_D29RPBSZ ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:222294167 2:221587487 PAX3--AC079834.2(13033)/AC079834.1(4954) BS_D29RPBSZ ARRIBA frameshift 5 0 high [],deletion PAX3 NA AC079834.2 AC079834.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_D29RPBSZ ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +17:63200957 16:83670790 TANC2--CDH13 BS_D29RPBSZ ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr17--chr16]],translocation TANC2 NA CDH13 NA NA TumorSuppressorGene, Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_D2K9C7XR ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_D2K9C7XR ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:60762796 1:60826585 AC099792.1--AC099792.1 BS_D2K9C7XR ARRIBA other 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication AC099792.1 NA AC099792.1 NA NA NA NA NA NA +14:77704369 1:245235423 ALKBH1--KIF26B BS_D2K9C7XR ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr14--chr1]],translocation/5'-5' ALKBH1 NA KIF26B NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_D2K9C7XR ARRIBA other 8 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_D2K9C7XR ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +5:24535112 5:24537674 CDH10--CDH10 BS_D2K9C7XR ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +18:61507560 18:61500383 CDH20--CDH20 BS_D2K9C7XR ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.22Mb]],duplication/non-canonical_splicing CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA +7:51136158 3:44458364 COBL--ZNF445 BS_D2K9C7XR ARRIBA frameshift 1 1 high [INTERCHROMOSOMAL[chr7--chr3]],translocation COBL NA ZNF445 NA NA TranscriptionFactor NA NA NA +7:51136158 3:44455696 COBL--ZNF445 BS_D2K9C7XR ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr7--chr3]],translocation COBL NA ZNF445 NA NA TranscriptionFactor NA NA NA +7:51136158 3:44500637 COBL--ZNF852 BS_D2K9C7XR ARRIBA in-frame 2 1 medium [INTERCHROMOSOMAL[chr7--chr3]],translocation COBL NA ZNF852 NA NA TranscriptionFactor NA NA NA +13:20512443 13:20560249 CRYL1--CRYL1(34392)/AL590096.1(4459) BS_D2K9C7XR ARRIBA frameshift 9 0 high [],duplication CRYL1 NA CRYL1 AL590096.1 NA NA NA NA NA +13:20512443 13:20584152 CRYL1--IFT88 BS_D2K9C7XR ARRIBA frameshift 19 0 high [INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_INVERSION:-:+:[41212]],duplication/5'-5' CRYL1 NA IFT88 NA NA TumorSuppressorGene NA NA NA +4:139176967 4:134103517 ELF2--AC079380.1 BS_D2K9C7XR ARRIBA other 9 0 medium [INTRACHROMOSOMAL[chr4:5.02Mb]],deletion ELF2 NA AC079380.1 NA TranscriptionFactor NA NA NA NA +4:139176967 4:134103517 ELF2--AC079380.1(92827)/PABPC4L(92816) BS_D2K9C7XR ARRIBA other 13 0 high [],deletion ELF2 NA AC079380.1 PABPC4L TranscriptionFactor NA NA NA NA +1:245156683 14:77710838 KIF26B--SLIRP BS_D2K9C7XR ARRIBA frameshift 3 1 medium [INTERCHROMOSOMAL[chr1--chr14]],translocation KIF26B NA SLIRP NA NA NA NA NA NA +14:78403878 1:245366834 NRXN3--KIF26B BS_D2K9C7XR ARRIBA other 22 3 high [INTERCHROMOSOMAL[chr14--chr1]],translocation NRXN3 NA KIF26B NA NA NA NA NA NA +14:78243802 1:245366834 NRXN3--KIF26B BS_D2K9C7XR ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr14--chr1]],translocation NRXN3 NA KIF26B NA NA NA NA NA NA +14:78297860 1:245366834 NRXN3--KIF26B BS_D2K9C7XR ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr14--chr1]],translocation NRXN3 NA KIF26B NA NA NA NA NA NA +14:78403878 1:245366834 NRXN3--KIF26B BS_D2K9C7XR STARFUSION other 23 2 NA [INTERCHROMOSOMAL[chr14--chr1]] NRXN3 NA KIF26B NA NA NA NA NA NA +19:33391295 18:13774157 PEPD--RNMT(9599)/MC5R(49992) BS_D2K9C7XR ARRIBA frameshift 11 3 high [],translocation PEPD NA RNMT MC5R NA NA NA NA NA +18:70531787 18:70490055 RN7SL795P(18779)/GTSCR1(98747)--AC091305.2 BS_D2K9C7XR ARRIBA other 5 0 medium [],duplication RN7SL795P GTSCR1 AC091305.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_D2K9C7XR ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_D3YBV7KB ARRIBA other 54 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_D3YBV7KB ARRIBA other 54 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:49586759 6:52995790 AL139099.5--7SK BS_D3YBV7KB STARFUSION other 5 13 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_D3YBV7KB ARRIBA other 7 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +20:47074335 20:47072185 EYA2--EYA2 BS_D3YBV7KB ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.29Mb]],duplication/non-canonical_splicing EYA2 NA EYA2 NA NA NA NA NA NA +6:117566854 6:117321394 GOPC--ROS1 BS_D3YBV7KB ARRIBA in-frame 19 0 high [chimerdb_pubmed,ChimerKB,ChimerPub,Cosmic,Mitelman,INTRACHROMOSOMAL[chr6:0.13Mb]],deletion/read-through GOPC NA ROS1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA +3:178859489 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_D3YBV7KB ARRIBA other 1 1 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_D3YBV7KB ARRIBA other 6 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +5:3531753 5:3566558 LINC01019--LINC01019(30464)/IRX1(29496) BS_D3YBV7KB ARRIBA other 3 0 high [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA +14:49586757 6:52995793 RN7SL1--7SK BS_D3YBV7KB STARFUSION other 5 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +14:49586872 6:52995634 RN7SL1--7SK BS_D3YBV7KB STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_D3YBV7KB ARRIBA other 54 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16328660 4:16238771 TAPT1-AS1(8520)/ZEB2P1(32026)--TAPT1-AS1 BS_D3YBV7KB ARRIBA other 1 1 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_D3YBV7KB ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +6:52995911 14:49586763 7SK--RN7SL1 BS_D5NQV7N5 STARFUSION other 11 7 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL1 NA NA NA NA NA NA +6:52995910 14:49586765 RN7SK--AL139099.5 BS_D5NQV7N5 STARFUSION other 10 7 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA AL139099.5 NA NA NA NA NA NA +14:49862560 6:52995633 RN7SL2--7SK BS_D5NQV7N5 STARFUSION other 10 14 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862573 6:52995630 RN7SL2--7SK BS_D5NQV7N5 STARFUSION other 6 14 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862559 6:52995743 RN7SL2--7SK BS_D5NQV7N5 STARFUSION other 4 14 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862562 14:20343403 RN7SL2--AL355075.4 BS_D5NQV7N5 STARFUSION other 7 11 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862578 14:20343399 RN7SL2--AL355075.4 BS_D5NQV7N5 STARFUSION other 6 11 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862569 14:20343231 RN7SL2--AL355075.4 BS_D5NQV7N5 STARFUSION other 4 11 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862565 14:20343289 RN7SL2--AL355075.4 BS_D5NQV7N5 STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862561 14:20343396 RN7SL2--AL355075.4 BS_D5NQV7N5 STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862574 14:20343400 RN7SL2--RPPH1 BS_D5NQV7N5 STARFUSION other 8 11 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862562 14:20343403 RN7SL2--RPPH1 BS_D5NQV7N5 STARFUSION other 7 11 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862569 14:20343231 RN7SL2--RPPH1 BS_D5NQV7N5 STARFUSION other 4 11 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862563 14:20343379 RN7SL2--RPPH1 BS_D5NQV7N5 STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862561 14:20343396 RN7SL2--RPPH1 BS_D5NQV7N5 STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_D8N31T39 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_D8N31T39 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_D8N31T39 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93557472 AC110023.1--AC091078.1 BS_D8N31T39 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93557472 AC110023.1--AC091078.1 BS_D8N31T39 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_D8N31T39 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +1:77068843 1:77044204 AL035409.1--ST6GALNAC5 BS_D8N31T39 STARFUSION other 19 0 NA [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:+:[2209]] AL035409.1 NA ST6GALNAC5 NA NA NA NA NA NA +12:122288489 6:117320030 CLIP1--ROS1 BS_D8N31T39 ARRIBA in-frame 19 1 high [ChimerKB,Cosmic,INTERCHROMOSOMAL[chr12--chr6]],translocation CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA +12:122288489 6:117320030 CLIP1--ROS1 BS_D8N31T39 STARFUSION in-frame 19 1 NA [ChimerKB,Cosmic,INTERCHROMOSOMAL[chr12--chr6]] CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_D8N31T39 ARRIBA other 6 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_D8N31T39 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_D8N31T39 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995882 14:49862665 7SK--RN7SL2 BS_D9GEXXHX STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +1:84620757 1:117946086 CTBS(46277)/LINC01555(7473)--WDR3 BS_D9GEXXHX ARRIBA other 4 2 high [],inversion CTBS LINC01555 WDR3 NA NA NA NA NA NA +14:58641747 14:32433460 DACT1--AKAP6 BS_D9GEXXHX ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr14:25.80Mb]],duplication DACT1 NA AKAP6 NA TumorSuppressorGene NA NA NA NA +11:126229293 11:102263828 FAM118B--YAP1(30405)/AP000942.1(31232) BS_D9GEXXHX ARRIBA other 2 0 medium [],duplication FAM118B NA YAP1 AP000942.1 NA TumorSuppressorGene, Oncogene NA NA NA +5:15616072 20:61743563 FBXL7--CDH4 BS_D9GEXXHX ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr5--chr20]],translocation FBXL7 NA CDH4 NA Oncogene TumorSuppressorGene NA NA NA +11:125235115 11:78443648 PKNOX2--AP003086.2 BS_D9GEXXHX ARRIBA other 10 0 medium [INTRACHROMOSOMAL[chr11:46.72Mb]],duplication PKNOX2 NA AP003086.2 NA TranscriptionFactor NA NA NA NA +1:116910252 1:83860437 PTGFRN--LINC01725 BS_D9GEXXHX ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:33.05Mb]],duplication/5'-5' PTGFRN NA LINC01725 NA NA NA NA NA NA +11:75912039 11:109382270 UVRAG--AP003049.2 BS_D9GEXXHX ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr11:33.21Mb]],inversion UVRAG NA AP003049.2 NA TumorSuppressorGene NA NA NA NA +11:75912039 11:109365068 UVRAG--AP003049.2 BS_D9GEXXHX ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:33.21Mb]],inversion UVRAG NA AP003049.2 NA TumorSuppressorGene NA NA NA NA +1:117936887 1:83883136 WDR3--TTLL7 BS_D9GEXXHX ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:33.93Mb]],inversion WDR3 NA TTLL7 NA NA NA NA NA NA +1:117934682 1:83870082 WDR3--TTLL7 BS_D9GEXXHX ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:33.93Mb]],inversion WDR3 NA TTLL7 NA NA NA NA NA NA +1:117934682 1:83883136 WDR3--TTLL7 BS_D9GEXXHX ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:33.93Mb]],inversion WDR3 NA TTLL7 NA NA NA NA NA NA +11:102223752 11:126234995 YAP1--FAM118B BS_D9GEXXHX ARRIBA in-frame 44 4 high [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA +11:102223752 11:126240792 YAP1--FAM118B BS_D9GEXXHX ARRIBA in-frame 1 1 medium [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA +11:102223752 11:126234995 YAP1--FAM118B BS_D9GEXXHX STARFUSION other 44 4 NA [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]] YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_DBDXCXT5 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_DBDXCXT5 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_DBDXCXT5 ARRIBA other 5 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +16:4405491 16:2672859 CORO7--ERVK13-1 BS_DBDXCXT5 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr16:1.68Mb]],deletion CORO7 NA ERVK13-1 NA NA NA NA NA NA +9:128886121 9:123792630 LRRC8A--DENND1A BS_DBDXCXT5 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr9:4.95Mb]],inversion LRRC8A NA DENND1A NA NA NA NA NA NA +9:124733308 9:123820381 NR6A1--DENND1A BS_DBDXCXT5 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr9:0.59Mb]],inversion/5'-5' NR6A1 NA DENND1A NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_DBDXCXT5 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:105299309 12:49752464 SLC44A1--TMBIM6 BS_DBDXCXT5 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr9--chr12]],translocation SLC44A1 NA TMBIM6 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_DBDXCXT5 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +16:4307457 9:129022423 TFAP4(34382)/GLIS2(7304)--SH3GLB2 BS_DBDXCXT5 ARRIBA other 4 0 medium [],translocation TFAP4 GLIS2 SH3GLB2 NA Oncogene, TranscriptionFactor NA TranscriptionFactor NA NA +3:167554650 3:167560228 WDR49--WDR49 BS_DBDXCXT5 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.18Mb]],duplication/non-canonical_splicing WDR49 NA WDR49 NA NA NA NA NA NA +19:2841575 19:2832303 ZNF555--ZNF554 BS_DBDXCXT5 ARRIBA frameshift 2 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.01Mb],LOCAL_REARRANGEMENT:+:[5662]],duplication ZNF555 NA ZNF554 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_DEHJF4C7 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_DEHJF4C7 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_DEHJF4C7 ARRIBA other 4 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +14:59475869 14:59565275 L3HYPDH--CCDC175 BS_DEHJF4C7 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_DEHJF4C7 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:200761098 10:54568565 CAMSAP2--AL353784.1 BS_DFGS950G ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr1--chr10]],translocation CAMSAP2 NA AL353784.1 NA NA NA NA NA NA +1:200767915 1:200799519 CAMSAP2--CAMSAP2 BS_DFGS950G ARRIBA frameshift 2 1 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.12Mb]],inversion/3'-3' CAMSAP2 NA CAMSAP2 NA NA NA NA NA NA +5:173086626 5:175525007 CREBRF--SFXN1 BS_DFGS950G ARRIBA frameshift 11 4 high [INTRACHROMOSOMAL[chr5:2.34Mb]],inversion/3'-3' CREBRF NA SFXN1 NA NA NA NA NA NA +7:36861659 7:36674009 ELMO1--AOAH BS_DFGS950G STARFUSION frameshift 6 1 NA [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr7:0.13Mb]] ELMO1 NA AOAH NA Oncogene NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_DFGS950G ARRIBA in-frame 20 4 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +7:43501322 7:43492075 HECW1--HECW1 BS_DFGS950G ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_DFGS950G ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +13:101345301 13:101399165 NALCN--NALCN BS_DFGS950G ARRIBA frameshift 8 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.36Mb]],duplication/non-canonical_splicing NALCN NA NALCN NA NA NA NA NA NA +13:19677724 13:19570288 PSPC1--MRPS31P2 BS_DFGS950G STARFUSION other 6 1 NA [FA_CancerSupp,INTRACHROMOSOMAL[chr13:0.10Mb]] PSPC1 NA MRPS31P2 NA NA NA NA NA NA +5:175522422 5:173048733 SFXN1--ATP6V0E1(13288)/Y_RNA(3719) BS_DFGS950G ARRIBA frameshift 1 2 high [],inversion SFXN1 NA ATP6V0E1 Y_RNA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_DFWFBYSN ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_DFWFBYSN ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_DFWFBYSN ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_DFWFBYSN ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_DFWFBYSN ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_DFWFBYSN ARRIBA frameshift 19 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_DGTPWJ59 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_DGTPWJ59 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_DGTPWJ59 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +5:63973045 5:64139001 AC122707.1--AC122707.1(157958)/RNF180(26843) BS_DGTPWJ59 ARRIBA other 4 0 medium [],duplication AC122707.1 NA AC122707.1 RNF180 NA NA NA TumorSuppressorGene NA +11:108148858 11:108131907 ACAT1(1082)/NPAT(8357)--ACAT1 BS_DGTPWJ59 ARRIBA other 1 0 low [],duplication ACAT1 NPAT ACAT1 NA NA NA NA NA NA +20:46492682 20:46506458 AL031686.1--ZNF334 BS_DGTPWJ59 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46492682 20:46503097 AL031686.1--ZNF334 BS_DGTPWJ59 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46474501 20:46509751 AL031686.1--ZNF334 BS_DGTPWJ59 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_DGTPWJ59 ARRIBA other 4 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +1:186425297 1:186390711 C1orf27(3919)/AL596220.1(9864)--C1orf27 BS_DGTPWJ59 ARRIBA other 5 0 medium [],duplication C1orf27 AL596220.1 C1orf27 NA NA NA NA NA NA +4:173039860 4:173073050 GALNTL6--GALNTL6(31491)/AC105285.1(58878) BS_DGTPWJ59 ARRIBA other 5 2 medium [],duplication GALNTL6 NA GALNTL6 AC105285.1 NA NA NA NA NA +13:101345301 13:101399165 NALCN--NALCN BS_DGTPWJ59 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.36Mb]],duplication/non-canonical_splicing NALCN NA NALCN NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_DGTPWJ59 ARRIBA in-frame 34 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +1:26817973 3:184245811 RN7SL165P(2861)/ZDHHC18(8737)--ALG3 BS_DGTPWJ59 ARRIBA other 4 0 medium [],translocation RN7SL165P ZDHHC18 ALG3 NA NA NA Oncogene NA NA +8:89331998 8:89725641 RPSAP74(88205)/KRT8P4(80623)--AF117829.1 BS_DGTPWJ59 ARRIBA other 2 0 medium [],duplication RPSAP74 KRT8P4 AF117829.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_DGTPWJ59 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +13:36201879 13:36256167 SOHLH2--CCDC169 BS_DGTPWJ59 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr13:0.01Mb],LOCAL_REARRANGEMENT:-:[7393]],duplication SOHLH2 NA CCDC169 NA TranscriptionFactor NA NA NA NA +4:16323036 4:16288884 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_DGTPWJ59 ARRIBA other 2 1 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +19:7917859 19:7911250 TGFBR3L--MAP2K7 BS_DGTPWJ59 ARRIBA frameshift 16 0 high [INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:+:[1667]],duplication TGFBR3L NA MAP2K7 NA NA Kinase, Kinase NA NA NA +19:7917859 19:7911250 TGFBR3L--MAP2K7 BS_DGTPWJ59 STARFUSION frameshift 17 1 NA [INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:+:[1667]] TGFBR3L NA MAP2K7 NA NA Kinase, Kinase NA NA NA +3:106685809 3:106838212 Y_RNA(169811)/Y_RNA(2869)--LINC00882 BS_DGTPWJ59 ARRIBA other 4 0 medium [],duplication Y_RNA Y_RNA LINC00882 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_DHA5FMVW ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_DHA5FMVW ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_DHA5FMVW STARFUSION other 18 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +19:10271226 19:10701950 ICAM1--QTRT1 BS_DHA5FMVW ARRIBA frameshift 19 0 medium [INTRACHROMOSOMAL[chr19:0.41Mb]],deletion ICAM1 NA QTRT1 NA Oncogene NA NA NA NA +19:10271226 19:10707302 ICAM1--QTRT1 BS_DHA5FMVW ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr19:0.41Mb]],deletion ICAM1 NA QTRT1 NA Oncogene NA NA NA NA +19:10271226 19:10702116 ICAM1--QTRT1 BS_DHA5FMVW ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr19:0.41Mb]],deletion ICAM1 NA QTRT1 NA Oncogene NA NA NA NA +19:10271226 19:10701950 ICAM1--QTRT1 BS_DHA5FMVW STARFUSION frameshift 21 0 NA [INTRACHROMOSOMAL[chr19:0.41Mb]] ICAM1 NA QTRT1 NA Oncogene NA NA NA NA +11:68519651 22:24164400 PPP6R3--CABIN1 BS_DHA5FMVW ARRIBA other 32 1 high [INTERCHROMOSOMAL[chr11--chr22]],translocation PPP6R3 NA CABIN1 NA NA NA NA NA NA +11:68522689 22:24164400 PPP6R3--CABIN1 BS_DHA5FMVW ARRIBA other 2 1 high [INTERCHROMOSOMAL[chr11--chr22]],translocation PPP6R3 NA CABIN1 NA NA NA NA NA NA +11:68519651 22:24160330 PPP6R3--CABIN1 BS_DHA5FMVW ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr11--chr22]],translocation PPP6R3 NA CABIN1 NA NA NA NA NA NA +11:68460827 22:24164400 PPP6R3--CABIN1 BS_DHA5FMVW ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr11--chr22]],translocation PPP6R3 NA CABIN1 NA NA NA NA NA NA +11:68519651 22:24164400 PPP6R3--CABIN1 BS_DHA5FMVW STARFUSION other 35 1 NA [INTERCHROMOSOMAL[chr11--chr22]] PPP6R3 NA CABIN1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_DHA5FMVW ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +18:51110874 18:51560593 SMAD4(25829)/AC090330.1(47408)--LINC01630 BS_DHA5FMVW ARRIBA other 2 0 medium [],deletion SMAD4 AC090330.1 LINC01630 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_DMZP9G1H ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_DMZP9G1H ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:38974155 15:39594233 AC013652.1--THBS1 BS_DMZP9G1H ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr15:0.15Mb]],duplication/5'-5' AC013652.1 NA THBS1 NA NA TumorSuppressorGene, Oncogene NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_DMZP9G1H ARRIBA other 7 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_DMZP9G1H ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_DMZP9G1H ARRIBA frameshift 23 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211082898 AL590132.1--KCNH1 BS_DMZP9G1H ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211103602 AL590132.1--KCNH1 BS_DMZP9G1H ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_DMZP9G1H ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_DMZP9G1H ARRIBA frameshift 24 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_DMZP9G1H ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_DMZP9G1H ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_DMZP9G1H ARRIBA frameshift 5 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_DMZP9G1H ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_DMZP9G1H ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_DMZP9G1H ARRIBA frameshift 17 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_DMZP9G1H ARRIBA in-frame 70 8 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_DMZP9G1H STARFUSION other 9 10 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_DMZP9G1H ARRIBA frameshift 14 4 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_DMZP9G1H ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:127242695 7:127243515 GRM8--GRM8 BS_DMZP9G1H ARRIBA frameshift 5 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_DMZP9G1H ARRIBA frameshift 23 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_DMZP9G1H ARRIBA frameshift 24 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_DMZP9G1H ARRIBA frameshift 5 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_DMZP9G1H ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_DMZP9G1H ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_DMZP9G1H ARRIBA frameshift 2 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_DMZP9G1H ARRIBA in-frame 7 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_DMZP9G1H ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_DMZP9G1H ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_DMZP9G1H ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211107377 KCNH1--AL590132.1 BS_DMZP9G1H ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211082898 KCNH1--AL590132.1 BS_DMZP9G1H ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211103602 KCNH1--AL590132.1 BS_DMZP9G1H ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_DMZP9G1H ARRIBA frameshift 24 4 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_DMZP9G1H ARRIBA frameshift 14 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_DMZP9G1H ARRIBA other 4 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +6:61606290 6:61661364 MTRNR2L9(31888)/AL049544.1(23943)--AL049544.1 BS_DMZP9G1H ARRIBA other 4 0 medium [],duplication MTRNR2L9 AL049544.1 AL049544.1 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_DMZP9G1H ARRIBA other 4 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +15:27844959 15:27926254 OCA2--OCA2 BS_DMZP9G1H ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.34Mb]],duplication/non-canonical_splicing OCA2 NA OCA2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_DMZP9G1H ARRIBA in-frame 25 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_DMZP9G1H ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +6:88769774 6:88844521 RNGTT--RNGTT BS_DMZP9G1H ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.35Mb]],duplication/non-canonical_splicing RNGTT NA RNGTT NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_DMZP9G1H ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_DMZP9G1H ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +2:43397971 2:43527988 THADA--THADA BS_DMZP9G1H ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.37Mb]],duplication/non-canonical_splicing THADA NA THADA NA Oncogene Oncogene NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_DMZP9G1H ARRIBA other 3 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +X:155509901 X:155419562 TMLHE-AS1--F8A2(36332)/F8A3(37352) BS_DMZP9G1H ARRIBA other 3 0 low [],inversion TMLHE-AS1 NA F8A2 F8A3 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_DPF1CX0G ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_DPF1CX0G ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_DPF1CX0G ARRIBA other 4 2 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_DPF1CX0G ARRIBA other 3 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +6:56503997 1:55165950 DST--USP24 BS_DPF1CX0G ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr6--chr1]],translocation DST NA USP24 NA Oncogene Oncogene NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_DPF1CX0G ARRIBA in-frame 8 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_DPF1CX0G ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +15:24992169 15:44715615 SNHG14--B2M BS_DPF1CX0G ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr15:19.29Mb]],deletion SNHG14 NA B2M NA NA CosmicCensus, Oncogene NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_DRD9QXR5 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +11:31064469 11:31065153 DCDC1--DCDC1 BS_DRD9QXR5 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.54Mb]],duplication/non-canonical_splicing DCDC1 NA DCDC1 NA NA NA NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_DRD9QXR5 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +21:40621255 21:40850170 DSCAM-IT1--DSCAM(3031)/YRDCP3(13824) BS_DRD9QXR5 ARRIBA other 3 0 medium [],duplication DSCAM-IT1 NA DSCAM YRDCP3 NA NA NA NA NA +1:236205250 1:236880755 GPR137B--MTR BS_DRD9QXR5 ARRIBA in-frame 6 4 high [INTRACHROMOSOMAL[chr1:0.57Mb]],deletion GPR137B NA MTR NA NA NA NA NA NA +1:236183906 1:236880755 GPR137B--MTR BS_DRD9QXR5 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.57Mb]],deletion GPR137B NA MTR NA NA NA NA NA NA +2:1839149 2:1892287 MYT1L--MYT1L BS_DRD9QXR5 ARRIBA frameshift 8 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +12:106750793 12:106686884 RFX4--RFX4 BS_DRD9QXR5 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_DRD9QXR5 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_DRD9QXR5 ARRIBA other 5 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +19:42294903 19:48127031 CIC--AC011466.3 BS_DRY58DTF ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr19:5.82Mb]],deletion CIC NA AC011466.3 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +19:42232057 19:42309579 GSK3A--PRR19 BS_DRY58DTF ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr19:0.06Mb],LOCAL_INVERSION:-:+:[59473]],inversion GSK3A NA PRR19 NA Kinase, Kinase NA NA NA NA +13:97276409 12:18225659 MBNL2--RERGL BS_DRY58DTF ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr13--chr12]],translocation/5'-5' MBNL2 NA RERGL NA TranscriptionFactor NA NA NA NA +19:42371482 20:62450743 MEGF8--AL121832.1(3122)/GATA5(12754) BS_DRY58DTF ARRIBA frameshift 2 0 medium [],translocation MEGF8 NA AL121832.1 GATA5 NA NA NA TumorSuppressorGene, TranscriptionFactor NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_DS438CXE ARRIBA other 29 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_DS438CXE ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_DS438CXE ARRIBA frameshift 18 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_DS438CXE ARRIBA other 15 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_DSS3S5XD ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_DSS3S5XD ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:56111118 5:56116782 ANKRD55--ANKRD55 BS_DSS3S5XD ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.13Mb]],duplication/non-canonical_splicing ANKRD55 NA ANKRD55 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_DSS3S5XD ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +16:58387434 16:58382569 GINS3--GINS3 BS_DSS3S5XD ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.11Mb]],duplication GINS3 NA GINS3 NA NA NA NA NA NA +7:138844317 7:140783157 KIAA1549--BRAF BS_DSS3S5XD ARRIBA in-frame 47 7 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138844317 7:140783157 KIAA1549--BRAF BS_DSS3S5XD STARFUSION in-frame 48 7 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +5:3531753 5:3566558 LINC01019--LINC01019(30464)/IRX1(29496) BS_DSS3S5XD ARRIBA other 3 0 high [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA +14:49862575 6:52995791 RN7SL2--7SK BS_DSS3S5XD STARFUSION other 6 8 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_DSS3S5XD ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_DV86M0Y7 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_DV86M0Y7 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_DV86M0Y7 ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_DV86M0Y7 ARRIBA other 32 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_DV86M0Y7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_DV86M0Y7 ARRIBA other 18 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +21:9373947 21:8864001 CR381653.2--CR381670.1 BS_DV86M0Y7 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr21:0.49Mb]],inversion CR381653.2 NA CR381670.1 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_DV86M0Y7 ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_DV86M0Y7 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_DV86M0Y7 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_DV86M0Y7 ARRIBA in-frame 3 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +4:109664394 4:123256016 MCUB--SPATA5 BS_DV86M0Y7 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr4:13.23Mb]],deletion MCUB NA SPATA5 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_DV86M0Y7 ARRIBA other 3 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_DV86M0Y7 ARRIBA other 32 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_DV86M0Y7 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_DV86M0Y7 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_DV86M0Y7 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_DV86M0Y7 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +6:28234131 6:28227012 ZSCAN9(649)/ZKSCAN4(10492)--ZSCAN9 BS_DV86M0Y7 ARRIBA other 3 0 medium [],duplication ZSCAN9 ZKSCAN4 ZSCAN9 NA TranscriptionFactor TranscriptionFactor TranscriptionFactor NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_DVCQ8XDZ ARRIBA other 52 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_DVCQ8XDZ ARRIBA other 52 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_DVCQ8XDZ ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +21:15511119 21:15513934 AJ009632.2--AJ009632.2 BS_DVCQ8XDZ ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.26Mb]],duplication/non-canonical_splicing AJ009632.2 NA AJ009632.2 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_DVCQ8XDZ ARRIBA frameshift 18 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_DVCQ8XDZ ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_DVCQ8XDZ ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_DVCQ8XDZ ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_DVCQ8XDZ ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_DVCQ8XDZ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_DVCQ8XDZ ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_DVCQ8XDZ ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_DVCQ8XDZ ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_DVCQ8XDZ ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_DVCQ8XDZ ARRIBA in-frame 46 9 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_DVCQ8XDZ ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_DVCQ8XDZ ARRIBA frameshift 18 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_DVCQ8XDZ ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_DVCQ8XDZ ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_DVCQ8XDZ ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_DVCQ8XDZ ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_DVCQ8XDZ ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_DVCQ8XDZ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_DVCQ8XDZ ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_DVCQ8XDZ ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_DVCQ8XDZ ARRIBA frameshift 18 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +1:196373140 1:196479238 KCNT2--KCNT2 BS_DVCQ8XDZ ARRIBA frameshift 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_DVCQ8XDZ ARRIBA other 3 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_DVCQ8XDZ ARRIBA other 7 1 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_DVCQ8XDZ ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_DVCQ8XDZ ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +7:39086031 7:38986246 POU6F2--POU6F2 BS_DVCQ8XDZ ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_DVCQ8XDZ ARRIBA other 52 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:158648717 4:158607972 RXFP1--RXFP1 BS_DVCQ8XDZ ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA +10:131260259 10:131309299 TCERG1L--TCERG1L BS_DVCQ8XDZ ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA +14:93497286 14:93466698 UNC79--UNC79 BS_DVCQ8XDZ ARRIBA frameshift 7 1 medium [SELFIE,INTRACHROMOSOMAL[chr14:0.37Mb]],duplication UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_DY88N5ZT ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_DY88N5ZT ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_DY88N5ZT ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +X:20839997 12:130506769 AL807742.1--RIMBP2 BS_DY88N5ZT ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chrX--chr12]],translocation AL807742.1 NA RIMBP2 NA NA NA NA NA NA +17:46576175 1:51309017 ARL17A--TTC39A BS_DY88N5ZT ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr17--chr1]],translocation/5'-5' ARL17A NA TTC39A NA NA NA NA NA NA +2:15551493 2:15997609 NBAS--AC010145.1 BS_DY88N5ZT ARRIBA frameshift 12 2 medium [INTRACHROMOSOMAL[chr2:0.44Mb]],duplication NBAS NA AC010145.1 NA NA NA NA NA NA +2:15551493 2:15997412 NBAS--AC010145.1 BS_DY88N5ZT ARRIBA frameshift 6 2 medium [INTRACHROMOSOMAL[chr2:0.44Mb]],duplication NBAS NA AC010145.1 NA NA NA NA NA NA +2:15366580 2:15997412 NBAS--AC010145.1 BS_DY88N5ZT ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr2:0.44Mb]],duplication NBAS NA AC010145.1 NA NA NA NA NA NA +2:15461201 2:15941097 NBAS--MYCNOS BS_DY88N5ZT ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr2:0.36Mb]],duplication NBAS NA MYCNOS NA NA NA NA NA NA +2:15366580 2:15941097 NBAS--MYCNOS BS_DY88N5ZT ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr2:0.36Mb]],duplication NBAS NA MYCNOS NA NA NA NA NA NA +2:15551493 2:15941097 NBAS--MYCNOS BS_DY88N5ZT ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.36Mb]],duplication NBAS NA MYCNOS NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_DY88N5ZT ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_DY88N5ZT ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_DY9NTFQR ARRIBA other 14 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_DY9NTFQR ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +19:11451920 19:42300287 ELAVL3--PAFAH1B3 BS_DY9NTFQR ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr19:30.82Mb]],inversion/3'-3' ELAVL3 NA PAFAH1B3 NA NA NA NA NA NA +21:14825522 21:15043573 LINC02246--NRIP1 BS_DY9NTFQR ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr21:0.04Mb],LOCAL_REARRANGEMENT:-:[42683]],duplication LINC02246 NA NRIP1 NA NA Oncogene NA NA NA +15:70936822 15:70900922 LRRC49--LRRC49 BS_DY9NTFQR ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.20Mb]],duplication/non-canonical_splicing LRRC49 NA LRRC49 NA NA NA NA NA NA +2:77518318 2:77522069 LRRTM4--LRRTM4 BS_DY9NTFQR ARRIBA frameshift 16 1 high [SELFIE,INTRACHROMOSOMAL[chr2:0.85Mb]],duplication LRRTM4 NA LRRTM4 NA NA NA NA NA NA +14:100949596 14:100913432 MEG8--MEG8 BS_DY9NTFQR ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_DY9NTFQR ARRIBA other 14 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +14:20343074 14:49862668 AL355075.4--RN7SL2 BS_E054DFJN STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] AL355075.4 NA RN7SL2 NA NA NA NA NA NA +4:118251569 4:118331866 NDST3--PRSS12 BS_E054DFJN ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_INVERSION:+:-:[21390]],duplication/3'-3' NDST3 NA PRSS12 NA NA NA NA NA NA +14:20343074 14:49862668 RPPH1--RN7SL2 BS_E054DFJN STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RPPH1 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_E0N3PTPN ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_E0N3PTPN ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +13:19751271 13:19835689 PSPC1--ZMYM5 BS_E0N3PTPN ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19759323 13:19835689 PSPC1--ZMYM5 BS_E0N3PTPN ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_E0N3PTPN ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_E1CGF3KV ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_E1CGF3KV ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_E1CGF3KV ARRIBA other 2 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +6:44429910 6:135217864 CDC5L--MYB BS_E1CGF3KV ARRIBA in-frame 8 0 high [INTRACHROMOSOMAL[chr6:90.73Mb]],deletion CDC5L NA MYB NA TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +6:135203324 6:163561982 MYB--QKI BS_E1CGF3KV ARRIBA in-frame 107 5 high [ChimerPub,INTRACHROMOSOMAL[chr6:28.19Mb]],deletion MYB NA QKI NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA +6:135203324 6:163561982 MYB--QKI BS_E1CGF3KV STARFUSION in-frame 122 5 NA [ChimerPub,INTRACHROMOSOMAL[chr6:28.19Mb]] MYB NA QKI NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA +6:163535125 6:44445655 QKI--CDC5L BS_E1CGF3KV ARRIBA in-frame 189 5 high [INTRACHROMOSOMAL[chr6:118.96Mb]],duplication QKI NA CDC5L NA TumorSuppressorGene, CosmicCensus TranscriptionFactor NA NA NA +6:163535125 6:44445655 QKI--CDC5L BS_E1CGF3KV STARFUSION in-frame 209 6 NA [INTRACHROMOSOMAL[chr6:118.96Mb]] QKI NA CDC5L NA TumorSuppressorGene, CosmicCensus TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_E1CGF3KV ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_E2Z940S4 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_E2Z940S4 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_E2Z940S4 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995864 14:49862665 7SK--RN7SL2 BS_E3BAT4C1 STARFUSION other 5 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_E3BAT4C1 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_E3BAT4C1 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_E3BAT4C1 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +5:91102340 5:90781430 ADGRV1--ADGRV1 BS_E3BAT4C1 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_E3BAT4C1 ARRIBA other 3 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +6:22400643 6:22349229 CASC15(32315)/HDGFL1(168850)--CASC15 BS_E3BAT4C1 ARRIBA other 7 0 medium [],duplication CASC15 HDGFL1 CASC15 NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_E3BAT4C1 ARRIBA frameshift 47 8 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +14:93182792 10:103882372 MOAP1--AL133355.1(2611)/STN1(170) BS_E3BAT4C1 ARRIBA frameshift 18 3 medium [],translocation MOAP1 NA AL133355.1 STN1 NA NA NA NA NA +6:61606290 6:61661364 MTRNR2L9(31888)/AL049544.1(23943)--AL049544.1 BS_E3BAT4C1 ARRIBA other 6 0 medium [],duplication MTRNR2L9 AL049544.1 AL049544.1 NA NA NA NA NA NA +2:45652448 8:8381834 PRKCE--PRAG1 BS_E3BAT4C1 ARRIBA frameshift 8 0 high [INTERCHROMOSOMAL[chr2--chr8]],translocation PRKCE NA PRAG1 NA TumorSuppressorGene, Kinase Kinase NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_E3BAT4C1 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +X:7334107 X:7803301 STS--AC120338.1(312102)/VCX(38961) BS_E3BAT4C1 ARRIBA frameshift 1 1 high [],deletion STS NA AC120338.1 VCX NA NA NA NA NA +1:114947320 1:114923449 SYCP1--SYCP1 BS_E3BAT4C1 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_E3BAT4C1 ARRIBA other 6 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +3:127590410 2:12558206 TPRA1--MIR3681HG BS_E3BAT4C1 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr3--chr2]],translocation TPRA1 NA MIR3681HG NA NA NA NA NA NA +3:127590410 2:12340218 TPRA1--MIR3681HG BS_E3BAT4C1 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr3--chr2]],translocation TPRA1 NA MIR3681HG NA NA NA NA NA NA +3:127590410 2:12308688 TPRA1--MIR3681HG BS_E3BAT4C1 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr3--chr2]],translocation TPRA1 NA MIR3681HG NA NA NA NA NA NA +4:16426440 4:16256257 AC097515.1--TAPT1-AS1 BS_E4F1D721 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16238771 AC097515.1--TAPT1-AS1 BS_E4F1D721 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16320065 AC097515.1--TAPT1-AS1 BS_E4F1D721 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +8:71527549 8:71535848 AC099805.1--AC099805.1 BS_E4F1D721 ARRIBA other 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr8:0.19Mb]],duplication AC099805.1 NA AC099805.1 NA NA NA NA NA NA +4:184825916 4:187019821 ACSL1--AC110772.1 BS_E4F1D721 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr4:2.15Mb]],inversion/5'-5' ACSL1 NA AC110772.1 NA NA NA NA NA NA +10:47542167 10:46940623 AL591684.2--PTPN20 BS_E4F1D721 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr10:0.52Mb]],inversion AL591684.2 NA PTPN20 NA NA NA NA NA NA +10:47542167 10:46964986 AL591684.2--PTPN20 BS_E4F1D721 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.52Mb]],inversion AL591684.2 NA PTPN20 NA NA NA NA NA NA +9:32966676 9:32989895 ASS1P12(19454)/APTX(5930)--APTX BS_E4F1D721 ARRIBA other 4 0 medium [],duplication ASS1P12 APTX APTX NA NA NA NA NA NA +10:47542167 10:46940623 BMS1P2--PTPN20 BS_E4F1D721 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr10:0.54Mb]],inversion BMS1P2 NA PTPN20 NA NA NA NA NA NA +10:47542167 10:46964986 BMS1P2--PTPN20 BS_E4F1D721 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.54Mb]],inversion BMS1P2 NA PTPN20 NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_E4F1D721 ARRIBA frameshift 10 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_E4F1D721 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_E4F1D721 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_E4F1D721 ARRIBA frameshift 26 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +4:16355785 4:16238771 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_E4F1D721 ARRIBA other 2 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +6:169663563 6:169689308 WDR27--WDR27 BS_E4F1D721 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.24Mb]],duplication/non-canonical_splicing WDR27 NA WDR27 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_E4GC9EXR ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_E4GC9EXR ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_E4GC9EXR ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_E4GC9EXR ARRIBA other 7 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_E4GC9EXR ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_E4GC9EXR STARFUSION other 14 24 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_E4GC9EXR ARRIBA other 7 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_E4GC9EXR ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_E4GC9EXR ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_E4GC9EXR ARRIBA other 2 2 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_E4QK839R ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_E4QK839R ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_E4QK839R ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +5:88498673 5:88507691 AC091826.2--LINC00461 BS_E4QK839R ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_E4QK839R ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_E4QK839R ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +5:61755944 5:61686883 C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_E4QK839R ARRIBA other 2 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_E4QK839R ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_E4QK839R ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_E4QK839R ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +2:24183645 2:24164198 FAM228A--FAM228B BS_E4QK839R ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[5429]],duplication FAM228A NA FAM228B NA NA NA NA NA NA +2:24183645 2:24135119 FAM228A--FAM228B BS_E4QK839R ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[5429]],duplication FAM228A NA FAM228B NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_E4QK839R ARRIBA frameshift 9 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_E4QK839R ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +17:32142729 17:30222081 RHOT1--SLC6A4 BS_E4QK839R ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr17:1.91Mb]],inversion RHOT1 NA SLC6A4 NA NA NA NA NA NA +14:49862574 6:52995634 RN7SL2--RN7SK BS_E4QK839R STARFUSION other 5 11 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL2 NA RN7SK NA NA NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_E4QK839R ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_E4QK839R ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_E60JZ9Z3 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_E60JZ9Z3 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:130941413 7:116699071 AC058791.1(1752)/LINC-PINT(347)--MET BS_E60JZ9Z3 ARRIBA other 24 4 high [],inversion AC058791.1 LINC-PINT MET NA NA Kinase, CosmicCensus, Oncogene, Kinase TumorSuppressorGene NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_E60JZ9Z3 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +7:43112937 2:12702097 HECW1--AC096559.1(96952)/AC009486.1(13318) BS_E60JZ9Z3 ARRIBA other 4 0 high [],translocation HECW1 NA AC096559.1 AC009486.1 NA NA NA NA NA +9:31973112 9:32405485 HMGB3P23(327952)/RNA5SP281(320446)--ACO1 BS_E60JZ9Z3 ARRIBA other 7 0 medium [],deletion HMGB3P23 RNA5SP281 ACO1 NA NA NA NA NA NA +7:130945720 7:116699071 LINC-PINT--MET BS_E60JZ9Z3 ARRIBA other 10 2 high [INTRACHROMOSOMAL[chr7:14.14Mb]],inversion LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:130945720 7:116731668 LINC-PINT--MET BS_E60JZ9Z3 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr7:14.14Mb]],inversion LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:130945720 7:116695750 LINC-PINT--MET BS_E60JZ9Z3 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr7:14.14Mb]],inversion LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +13:97276409 12:18225659 MBNL2--RERGL BS_E60JZ9Z3 ARRIBA frameshift 13 0 high [INTERCHROMOSOMAL[chr13--chr12]],translocation/5'-5' MBNL2 NA RERGL NA TranscriptionFactor NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_E60JZ9Z3 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +9:110016039 9:109780488 PALM2-AKAP2--PALM2 BS_E60JZ9Z3 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr9:0.17Mb]],duplication PALM2-AKAP2 NA PALM2 NA NA NA NA NA NA +9:109932028 9:109780488 PALM2-AKAP2--PALM2 BS_E60JZ9Z3 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.17Mb]],duplication PALM2-AKAP2 NA PALM2 NA NA NA NA NA NA +9:109943381 9:109931927 PALM2-AKAP2--PALM2 BS_E60JZ9Z3 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.17Mb]],duplication PALM2-AKAP2 NA PALM2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_E60JZ9Z3 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:117130606 7:30234246 ST7--AC007036.1(55232)/ZNRF2(50061) BS_E60JZ9Z3 ARRIBA frameshift 20 6 high [],inversion ST7 NA AC007036.1 ZNRF2 TumorSuppressorGene NA NA NA NA +13:60494575 15:57523489 TDRD3--CGNL1 BS_E60JZ9Z3 ARRIBA in-frame 41 1 high [INTERCHROMOSOMAL[chr13--chr15]],translocation TDRD3 NA CGNL1 NA NA NA NA NA NA +13:60494575 15:57523489 TDRD3--CGNL1 BS_E60JZ9Z3 STARFUSION in-frame 42 1 NA [INTERCHROMOSOMAL[chr13--chr15]] TDRD3 NA CGNL1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_E94QRJDW ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_E94QRJDW ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:140776912 5:180013311 BRAF--RNF130 BS_E94QRJDW ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation BRAF NA RNF130 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +7:140739812 5:180013311 BRAF--RNF130 BS_E94QRJDW ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation BRAF NA RNF130 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +7:140776912 5:180040647 BRAF--RNF130 BS_E94QRJDW ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation BRAF NA RNF130 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +5:180013061 7:140781693 RNF130--BRAF BS_E94QRJDW ARRIBA in-frame 25 4 high [ChimerKB,Cosmic,INTERCHROMOSOMAL[chr5--chr7]],translocation RNF130 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +5:180013061 7:140781693 RNF130--BRAF BS_E94QRJDW STARFUSION in-frame 25 4 NA [ChimerKB,Cosmic,INTERCHROMOSOMAL[chr5--chr7]] RNF130 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_E94QRJDW ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_E94QRJDW ARRIBA other 9 2 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +11:133725367 11:133297188 AP001979.2--OPCML BS_EBMCTR80 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr11:0.25Mb]],deletion AP001979.2 NA OPCML NA NA TumorSuppressorGene, Oncogene NA NA NA +X:96965207 9:84867243 DIAPH2--NTRK2 BS_EBMCTR80 ARRIBA in-frame 13 0 high [INTERCHROMOSOMAL[chrX--chr9]],translocation DIAPH2 NA NTRK2 NA NA Oncogene, Kinase NA NA NA +X:96965207 9:84861040 DIAPH2--NTRK2 BS_EBMCTR80 ARRIBA in-frame 6 0 medium [INTERCHROMOSOMAL[chrX--chr9]],translocation DIAPH2 NA NTRK2 NA NA Oncogene, Kinase NA NA NA +X:96965207 9:84867243 DIAPH2--NTRK2 BS_EBMCTR80 STARFUSION in-frame 14 0 NA [INTERCHROMOSOMAL[chrX--chr9]] DIAPH2 NA NTRK2 NA NA Oncogene, Kinase NA NA NA +9:84752085 X:97072941 NTRK2--DIAPH2 BS_EBMCTR80 ARRIBA in-frame 28 5 high [INTERCHROMOSOMAL[chr9--chrX]],translocation NTRK2 NA DIAPH2 NA Oncogene, Kinase NA NA NA NA +9:84752085 X:97072941 NTRK2--DIAPH2 BS_EBMCTR80 STARFUSION in-frame 30 7 NA [INTERCHROMOSOMAL[chr9--chrX]] NTRK2 NA DIAPH2 NA Oncogene, Kinase NA NA NA NA +15:76932466 12:13196810 RCN2--EMP1 BS_EBMCTR80 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr15--chr12]],translocation RCN2 NA EMP1 NA NA TumorSuppressorGene, Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_EF775B3K ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_EF775B3K ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_EF775B3K ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_EF775B3K ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_EF775B3K ARRIBA in-frame 18 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +4:143466225 9:90867131 GAB1--SYK BS_EF775B3K ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr4--chr9]],translocation GAB1 NA SYK NA Oncogene Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +4:143466225 9:90874204 GAB1--SYK BS_EF775B3K ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr4--chr9]],translocation GAB1 NA SYK NA Oncogene Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_EF775B3K ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_EF775B3K ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_EF775B3K ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:109447067 12:109460805 AC007570.1--KCTD10 BS_EFE4YEK3 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[1159]],duplication AC007570.1 NA KCTD10 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_EFE4YEK3 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_EFE4YEK3 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:117997182 3:117508051 AC092691.1--LSAMP(368662)/RNU6-1200P(36154) BS_EFE4YEK3 ARRIBA other 1 0 low [],deletion AC092691.1 NA LSAMP RNU6-1200P NA TumorSuppressorGene NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_EFE4YEK3 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +10:79671133 10:87449476 AL132656.2--MINPP1 BS_EFE4YEK3 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:7.83Mb]],deletion AL132656.2 NA MINPP1 NA NA NA NA NA NA +9:2904777 9:3014177 ATP5HP2(3973)/CARM1P1(2296)--CARM1P1 BS_EFE4YEK3 ARRIBA other 1 0 low [],duplication ATP5HP2 CARM1P1 CARM1P1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_EFE4YEK3 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_EFE4YEK3 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_EFE4YEK3 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_EFE4YEK3 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100585927 9:100572518 CAVIN4--TMEFF1 BS_EFE4YEK3 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100561397 CAVIN4--TMEFF1 BS_EFE4YEK3 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_EFE4YEK3 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_EFE4YEK3 ARRIBA frameshift 44 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_EFE4YEK3 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +11:33646036 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_EFE4YEK3 ARRIBA frameshift 1 2 medium [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +1:219218712 1:219210532 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_EFE4YEK3 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_EFE4YEK3 ARRIBA other 8 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_EFE4YEK3 ARRIBA frameshift 14 4 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +6:165379194 6:165388453 PDE10A--PDE10A BS_EFE4YEK3 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_EFE4YEK3 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_EFE4YEK3 ARRIBA frameshift 17 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +7:1233695 7:1010143 UNCX--C7orf50 BS_EFE4YEK3 ARRIBA in-frame 2 1 low [INTRACHROMOSOMAL[chr7:0.09Mb],LOCAL_INVERSION:+:-:[94647]],inversion UNCX NA C7orf50 NA TranscriptionFactor NA NA NA NA +1:216321883 1:216327654 USH2A--USH2A BS_EFE4YEK3 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_EFEZB0ZH ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_EFEZB0ZH ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:4419953 3:47928350 CSMD1--MAP4 BS_EFEZB0ZH ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr8--chr3]],translocation CSMD1 NA MAP4 NA TumorSuppressorGene Oncogene NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_EFEZB0ZH ARRIBA in-frame 6 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +20:19960811 20:19799622 RIN2--AL121761.1 BS_EFEZB0ZH ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr20:0.08Mb],LOCAL_REARRANGEMENT:+:[76846]],duplication RIN2 NA AL121761.1 NA NA NA NA NA NA +20:19935199 20:19799622 RIN2--AL121761.1 BS_EFEZB0ZH ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr20:0.08Mb],LOCAL_REARRANGEMENT:+:[76846]],duplication RIN2 NA AL121761.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_EFEZB0ZH ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_EHVYJAVA ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_EHVYJAVA ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_EHVYJAVA ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +10:4929717 10:4830675 AKR1C6P--AKR1E2 BS_EHVYJAVA ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_EHVYJAVA ARRIBA other 10 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +7:33642356 7:33533954 BBS9(36288)/AC008080.1(83625)--BBS9 BS_EHVYJAVA ARRIBA other 1 0 low [],duplication BBS9 AC008080.1 BBS9 NA NA NA NA NA NA +5:61755944 5:61748602 C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_EHVYJAVA ARRIBA other 3 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_EHVYJAVA ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_EHVYJAVA ARRIBA other 7 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_EHVYJAVA ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_EHVYJAVA ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_EHVYJAVA ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_EHVYJAVA ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:43501322 7:43468920 HECW1--HECW1 BS_EHVYJAVA ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_EHVYJAVA ARRIBA other 14 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +6:118813102 6:118856545 MCM9--MCM9 BS_EHVYJAVA ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_EHVYJAVA ARRIBA other 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_EHVYJAVA ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_EHVYJAVA ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +14:20343075 14:49862667 RPPH1--RN7SL2 BS_EHVYJAVA STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RPPH1 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_EHVYJAVA ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_EHVYJAVA ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +15:76137895 15:76112018 TMEM266--TMEM266 BS_EHVYJAVA ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.17Mb]],duplication/non-canonical_splicing TMEM266 NA TMEM266 NA NA NA NA NA NA +9:70681506 9:70784279 TRPM3--TRPM3 BS_EHVYJAVA ARRIBA in-frame 15 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_EHVYJAVA ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_EJ9JKM1C ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_EJ9JKM1C ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:4113750 X:15782485 ADCY9--CA5B BS_EJ9JKM1C ARRIBA frameshift 32 1 high [INTERCHROMOSOMAL[chr16--chrX]],translocation ADCY9 NA CA5B NA NA NA NA NA NA +16:4113750 X:15782485 ADCY9--CA5B BS_EJ9JKM1C STARFUSION frameshift 33 1 NA [INTERCHROMOSOMAL[chr16--chrX]] ADCY9 NA CA5B NA NA NA NA NA NA +13:87810484 13:87615755 AL445647.1--MIR4500HG BS_EJ9JKM1C STARFUSION other 24 3 NA [INTRACHROMOSOMAL[chr13:0.14Mb]] AL445647.1 NA MIR4500HG NA NA NA NA NA NA +2:28244862 10:91687289 BABAM2--GAPDHP28(19507)/FAF2P1(78610) BS_EJ9JKM1C ARRIBA frameshift 3 0 high [],translocation BABAM2 NA GAPDHP28 FAF2P1 NA NA NA NA NA +9:123878951 16:4262701 DENND1A--TFAP4 BS_EJ9JKM1C ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr9--chr16]],translocation DENND1A NA TFAP4 NA NA Oncogene, TranscriptionFactor NA NA NA +9:128886121 9:123792630 LRRC8A--DENND1A BS_EJ9JKM1C ARRIBA other 12 1 high [INTRACHROMOSOMAL[chr9:4.95Mb]],inversion LRRC8A NA DENND1A NA NA NA NA NA NA +9:128886121 9:123792630 LRRC8A--DENND1A BS_EJ9JKM1C STARFUSION other 12 1 NA [INTRACHROMOSOMAL[chr9:4.95Mb]] LRRC8A NA DENND1A NA NA NA NA NA NA +X:14897238 22:24054873 MOSPD2--CABIN1 BS_EJ9JKM1C ARRIBA frameshift 6 1 high [INTERCHROMOSOMAL[chrX--chr22]],translocation MOSPD2 NA CABIN1 NA NA NA NA NA NA +9:124733308 9:123820381 NR6A1--DENND1A BS_EJ9JKM1C ARRIBA frameshift 22 5 high [INTRACHROMOSOMAL[chr9:0.59Mb]],inversion/5'-5' NR6A1 NA DENND1A NA TranscriptionFactor NA NA NA NA +14:63539529 14:38385361 PPP2R5E--AL161751.1(73431)/AL357094.1(219894) BS_EJ9JKM1C ARRIBA frameshift 2 0 medium [],inversion PPP2R5E NA AL161751.1 AL357094.1 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_EJ9JKM1C ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:4303311 9:129022423 TFAP4(30236)/GLIS2(11450)--SH3GLB2 BS_EJ9JKM1C ARRIBA other 1 1 high [],translocation TFAP4 GLIS2 SH3GLB2 NA Oncogene, TranscriptionFactor NA TranscriptionFactor NA NA +9:132406790 9:129006239 TTF1--NUP188 BS_EJ9JKM1C ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr9:3.37Mb]],inversion TTF1 NA NUP188 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA +2:233493425 17:7415938 USP40--NLGN2 BS_EJ9JKM1C ARRIBA frameshift 1 1 high [INTERCHROMOSOMAL[chr2--chr17]],translocation USP40 NA NLGN2 NA NA NA NA NA NA +10:112668998 10:124144752 VTI1A--CHST15(51145)/OAT(252551) BS_EJ9JKM1C ARRIBA frameshift 3 0 high [],deletion VTI1A NA CHST15 OAT CosmicCensus, Oncogene NA NA NA NA +19:2841575 19:2832303 ZNF555--ZNF554 BS_EJ9JKM1C ARRIBA frameshift 3 0 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.01Mb],LOCAL_REARRANGEMENT:+:[5662]],duplication ZNF555 NA ZNF554 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_EK5PCKY0 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_EK5PCKY0 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_EK5PCKY0 ARRIBA other 5 2 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +3:167099408 3:167282495 AC092965.1(33088)/ZBBX(140879)--ZBBX BS_EK5PCKY0 ARRIBA other 2 0 low [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +10:27034796 10:27044190 ANKRD26--ANKRD26 BS_EK5PCKY0 ARRIBA frameshift 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr10:0.11Mb]],duplication/non-canonical_splicing ANKRD26 NA ANKRD26 NA NA NA NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_EK5PCKY0 ARRIBA in-frame 35 1 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_EK5PCKY0 STARFUSION in-frame 35 1 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +12:75282251 12:75316434 CAPS2--CAPS2 BS_EK5PCKY0 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.11Mb]],duplication/non-canonical_splicing CAPS2 NA CAPS2 NA NA NA NA NA NA +15:92974950 15:92955423 CHD2--CHD2 BS_EK5PCKY0 ARRIBA in-frame 34 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +13:39694725 13:39687503 COG6--COG6 BS_EK5PCKY0 ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.14Mb]],duplication/non-canonical_splicing COG6 NA COG6 NA NA NA NA NA NA +7:21582021 7:21570069 DNAH11--DNAH11 BS_EK5PCKY0 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.36Mb]],duplication/non-canonical_splicing DNAH11 NA DNAH11 NA NA NA NA NA NA +2:84781653 2:84706896 DNAH6--DNAH6 BS_EK5PCKY0 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.30Mb]],duplication/non-canonical_splicing DNAH6 NA DNAH6 NA NA NA NA NA NA +2:195897667 2:195907009 DNAH7--DNAH7 BS_EK5PCKY0 ARRIBA in-frame 32 6 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA +17:11640384 17:11608129 DNAH9--DNAH9 BS_EK5PCKY0 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.37Mb]],duplication/non-canonical_splicing DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA +6:56485312 6:56501693 DST--DST BS_EK5PCKY0 ARRIBA in-frame 7 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing DST NA DST NA Oncogene Oncogene NA NA NA +9:14756374 9:14770806 FREM1--FREM1 BS_EK5PCKY0 ARRIBA frameshift 9 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.18Mb]],duplication/non-canonical_splicing FREM1 NA FREM1 NA NA NA NA NA NA +13:20656430 13:20574380 IFT88--IFT88 BS_EK5PCKY0 ARRIBA in-frame 9 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr13:0.12Mb]],duplication/non-canonical_splicing IFT88 NA IFT88 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +7:105102194 7:105066727 KMT2E--KMT2E BS_EK5PCKY0 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing KMT2E NA KMT2E NA NA NA NA NA NA +14:100942838 14:100913432 MEG8--MEG8 BS_EK5PCKY0 ARRIBA other 67 15 high [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA +3:27115940 3:27141582 NEK10--NEK10 BS_EK5PCKY0 ARRIBA frameshift 10 2 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr3:0.26Mb]],duplication/non-canonical_splicing NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_EK5PCKY0 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +14:35634574 14:35723264 RALGAPA1--RALGAPA1 BS_EK5PCKY0 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.27Mb]],duplication/non-canonical_splicing RALGAPA1 NA RALGAPA1 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_EK5PCKY0 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +19:1021630 9:35657955 RNU6-2--RMRP BS_EK5PCKY0 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr19--chr9]],translocation RNU6-2 NA RMRP NA NA Oncogene NA NA NA +19:1021630 9:35657955 RNU6-2--RMRP BS_EK5PCKY0 STARFUSION other 8 0 NA [INTERCHROMOSOMAL[chr19--chr9]] RNU6-2 NA RMRP NA NA Oncogene NA NA NA +3:181231845 6:159780370 RNU6-4P--SNORA20 BS_EK5PCKY0 STARFUSION other 7 0 NA [INTERCHROMOSOMAL[chr3--chrY]] RNU6-4P NA SNORA20 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--METTL12 BS_EK5PCKY0 STARFUSION other 6 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--SNORA57 BS_EK5PCKY0 STARFUSION other 6 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_EK5PCKY0 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:145888020 6:145927277 SHPRH--SHPRH BS_EK5PCKY0 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing SHPRH NA SHPRH NA TumorSuppressorGene TumorSuppressorGene NA NA NA +1:117990861 1:118087008 SPAG17--SPAG17 BS_EK5PCKY0 ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing SPAG17 NA SPAG17 NA NA NA NA NA NA +5:35709121 5:35646667 SPEF2--SPEF2 BS_EK5PCKY0 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.20Mb]],duplication/non-canonical_splicing SPEF2 NA SPEF2 NA NA NA NA NA NA +11:65128929 11:63765288 SYVN1--C11orf95 BS_EK5PCKY0 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr11:1.35Mb]],deletion SYVN1 NA C11orf95 NA NA NA NA NA NA +17:29477706 17:29451455 TAOK1--TAOK1 BS_EK5PCKY0 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.16Mb]],duplication/non-canonical_splicing TAOK1 NA TAOK1 NA Kinase Kinase NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_EK5PCKY0 ARRIBA other 1 1 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +4:106212750 4:106237538 TBCK--TBCK BS_EK5PCKY0 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.28Mb]],duplication/non-canonical_splicing TBCK NA TBCK NA Kinase, Kinase Kinase, Kinase NA NA NA +14:56616027 14:56585001 TMEM260--TMEM260 BS_EK5PCKY0 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.16Mb]],duplication/non-canonical_splicing TMEM260 NA TMEM260 NA NA NA NA NA NA +15:43407943 15:43416416 TP53BP1--TP53BP1 BS_EK5PCKY0 ARRIBA in-frame 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.11Mb]],duplication/non-canonical_splicing TP53BP1 NA TP53BP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +1:55145998 1:55148570 USP24--USP24 BS_EK5PCKY0 ARRIBA frameshift 6 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing USP24 NA USP24 NA Oncogene Oncogene NA NA NA +15:61880609 15:61910305 VPS13C--VPS13C BS_EK5PCKY0 ARRIBA in-frame 12 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.21Mb]],duplication/non-canonical_splicing VPS13C NA VPS13C NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_EK5PCKY0 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +3:142380082 3:142405076 XRN1--XRN1 BS_EK5PCKY0 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.14Mb]],duplication/non-canonical_splicing XRN1 NA XRN1 NA NA NA NA NA NA +4:48710519 4:55452239 FRYL--TMEM165 BS_EMMF4PZX ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:6.62Mb]],inversion FRYL NA TMEM165 NA Oncogene NA NA NA NA +4:55396396 4:48710698 TMEM165--FRYL BS_EMMF4PZX ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:6.62Mb]],inversion TMEM165 NA FRYL NA NA Oncogene NA NA NA +2:217831455 2:217812022 TNS1--TNS1 BS_EMMF4PZX ARRIBA frameshift 35 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.20Mb]],inversion/5'-5' TNS1 NA TNS1 NA NA NA NA NA NA +2:217812149 2:217804601 TNS1--TNS1 BS_EMMF4PZX ARRIBA other 23 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.20Mb]],inversion/3'-3' TNS1 NA TNS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_EMYET8F4 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_EMYET8F4 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +6:132134483 6:132098931 LINC01013--AL021408.1 BS_EMYET8F4 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_EMYET8F4 ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:246564346 1:246568130 TFB2M--CNST BS_EMYET8F4 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_INVERSION:-:+:[120]],duplication/5'-5' TFB2M NA CNST NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_EN2VK7NY ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_EN2VK7NY ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:127242695 7:127243515 GRM8--GRM8 BS_EN2VK7NY ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_EN2VK7NY ARRIBA in-frame 6 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_EN2VK7NY ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_EN2VK7NY ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_ENKG5GF3 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +8:71244603 8:71334174 EYA1--EYA1 BS_ENKG5GF3 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.16Mb]],duplication/non-canonical_splicing EYA1 NA EYA1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ERJAJ0KA ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ERJAJ0KA ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93592733 15:93557603 AC110023.1--AC091078.1 BS_ERJAJ0KA ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_ERJAJ0KA ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_ERJAJ0KA ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_ERJAJ0KA ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_ERJAJ0KA ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_ERJAJ0KA ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_ERJAJ0KA ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_ERJAJ0KA ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_ERJAJ0KA ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_ERJAJ0KA ARRIBA other 6 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_ERJAJ0KA ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +5:61761022 5:61686883 C5orf64(9259)/AC026434.2(70925)--C5orf64 BS_ERJAJ0KA ARRIBA other 2 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_ERJAJ0KA ARRIBA in-frame 18 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:138242942 8:138256759 FAM135B--FAM135B BS_ERJAJ0KA ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_ERJAJ0KA ARRIBA other 12 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_ERJAJ0KA ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_ERJAJ0KA ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_ERJAJ0KA ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_ERJAJ0KA ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_ERJAJ0KA ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_ERJAJ0KA ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_ERJAJ0KA ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_ERJAJ0KA ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211082898 KCNH1--AL590132.1 BS_ERJAJ0KA ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_ERJAJ0KA ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_ERJAJ0KA ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_ERJAJ0KA ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_ERJAJ0KA ARRIBA in-frame 10 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +6:135203324 8:88168894 MYB--MMP16 BS_ERJAJ0KA ARRIBA frameshift 127 5 high [INTERCHROMOSOMAL[chr6--chr8]],translocation/5'-5' MYB NA MMP16 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +12:44665484 12:44714741 NELL2--NELL2 BS_ERJAJ0KA ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +15:69677640 15:69563116 PCAT29--DRAIC BS_ERJAJ0KA ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +15:69684442 15:69548354 PCAT29--DRAIC BS_ERJAJ0KA ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_ERJAJ0KA ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_ERJAJ0KA ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_ERJAJ0KA ARRIBA other 12 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ERJAJ0KA ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_ERJAJ0KA ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ERWT0ZWE ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ERWT0ZWE ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:65508067 5:65552549 AC025176.1(21019)/CENPK(9699)--CENPK BS_ERWT0ZWE ARRIBA other 3 0 medium [],duplication AC025176.1 CENPK CENPK NA NA NA NA NA NA +6:133456534 6:133507321 AL024497.2--TARID BS_ERWT0ZWE ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr6:0.05Mb],LOCAL_REARRANGEMENT:-:[45647]],duplication AL024497.2 NA TARID NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_ERWT0ZWE ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +1:247640429 1:247860617 AL390860.1--TRIM58 BS_ERWT0ZWE STARFUSION other 11 3 NA [INTRACHROMOSOMAL[chr1:0.11Mb]] AL390860.1 NA TRIM58 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_ERWT0ZWE ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:100585927 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_ERWT0ZWE ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_ERWT0ZWE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_ERWT0ZWE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100576516 CAVIN4--TMEFF1 BS_ERWT0ZWE ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_ERWT0ZWE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_ERWT0ZWE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_ERWT0ZWE ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +19:18521921 19:56547508 ELL--ZFP28 BS_ERWT0ZWE ARRIBA in-frame 12 0 high [INTRACHROMOSOMAL[chr19:38.02Mb]],inversion ELL NA ZFP28 NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA +19:18521921 19:56547807 ELL--ZFP28 BS_ERWT0ZWE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr19:38.02Mb]],inversion ELL NA ZFP28 NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA +6:65490594 6:65495993 EYS--EYS BS_ERWT0ZWE ARRIBA frameshift 66 2 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +3:62374298 3:62397223 FEZF2--FEZF2(22899)/CADPS(1123) BS_ERWT0ZWE ARRIBA other 5 0 high [],duplication FEZF2 NA FEZF2 CADPS TranscriptionFactor TranscriptionFactor NA NA NA +14:59456438 14:59568380 GPR135--CCDC175 BS_ERWT0ZWE ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59565275 GPR135--CCDC175 BS_ERWT0ZWE ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59551436 GPR135--CCDC175 BS_ERWT0ZWE ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59538840 GPR135--CCDC175 BS_ERWT0ZWE ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_ERWT0ZWE ARRIBA frameshift 16 4 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_ERWT0ZWE ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +1:219218712 1:219210532 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_ERWT0ZWE ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +6:61606290 6:61661364 MTRNR2L9(31888)/AL049544.1(23943)--AL049544.1 BS_ERWT0ZWE ARRIBA other 4 0 medium [],duplication MTRNR2L9 AL049544.1 AL049544.1 NA NA NA NA NA NA +6:61606290 6:62047994 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_ERWT0ZWE ARRIBA other 2 1 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +4:114839378 4:114870950 NDST4--NDST4 BS_ERWT0ZWE ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.29Mb]],duplication/non-canonical_splicing NDST4 NA NDST4 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +3:27115940 3:27141582 NEK10--NEK10 BS_ERWT0ZWE ARRIBA frameshift 3 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr3:0.26Mb]],duplication/non-canonical_splicing NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_ERWT0ZWE ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ERWT0ZWE ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:18763791 3:18463480 SATB1-AS1--SATB1-AS1 BS_ERWT0ZWE ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.48Mb]],duplication/non-canonical_splicing SATB1-AS1 NA SATB1-AS1 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_ERWT0ZWE ARRIBA frameshift 15 5 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_ERWT0ZWE ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +1:216231953 1:216496180 USH2A--USH2A(72784)/ESRRG(7066) BS_ERWT0ZWE ARRIBA frameshift 1 1 high [],duplication USH2A NA USH2A ESRRG NA NA NA Oncogene, TranscriptionFactor NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ET8CJXSF ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ET8CJXSF ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_ET8CJXSF ARRIBA other 2 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +5:61755944 5:61703866 C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_ET8CJXSF ARRIBA other 1 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_ET8CJXSF ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_ET8CJXSF ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_ET8CJXSF ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100547744 CAVIN4--TMEFF1 BS_ET8CJXSF ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_ET8CJXSF ARRIBA other 11 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_ET8CJXSF ARRIBA frameshift 27 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_ET8CJXSF ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_ET8CJXSF ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_ET8CJXSF ARRIBA other 2 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +6:24568781 6:24583702 KIAA0319--KIAA0319 BS_ET8CJXSF ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing KIAA0319 NA KIAA0319 NA NA NA NA NA NA +7:138844317 7:140783157 KIAA1549--BRAF BS_ET8CJXSF ARRIBA in-frame 14 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138844317 7:140783157 KIAA1549--BRAF BS_ET8CJXSF STARFUSION in-frame 14 1 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_ET8CJXSF ARRIBA other 3 0 medium [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +15:76009200 15:76035991 NRG4--NRG4 BS_ET8CJXSF ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_ET8CJXSF ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_ET8CJXSF ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +14:49862557 6:52995644 RN7SL2--7SK BS_ET8CJXSF STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ET8CJXSF ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52142930 8:52166986 ST18--ST18 BS_ET8CJXSF ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_ET8CJXSF ARRIBA other 6 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +12:72378121 12:72370764 TRHDE--TRHDE BS_ET8CJXSF ARRIBA frameshift 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr12:0.40Mb]],duplication TRHDE NA TRHDE NA NA NA NA NA NA +10:102344182 10:102258929 GBF1--GBF1 BS_EVCAC3NH ARRIBA frameshift 10 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr10:0.14Mb]],duplication/non-canonical_splicing GBF1 NA GBF1 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_EVCAC3NH ARRIBA other 15 1 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +8:93831572 8:93755020 TMEM67(12338)/AC084346.1(2882)--TMEM67 BS_EVCAC3NH ARRIBA other 1 2 high [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_EXGBH3TD ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_EXGBH3TD ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:171251523 1:170807604 AL445673.1--PRRX1(68185)/MROH9(127867) BS_EXGBH3TD ARRIBA other 1 2 high [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +9:22127563 9:22096372 CDKN2B-AS1(6466)/AL157937.1(76427)--CDKN2B-AS1 BS_EXGBH3TD ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_EXGBH3TD STARFUSION other 23 2 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_EXGBH3TD ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_EYSS0ZDS ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_EYSS0ZDS ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_EYSS0ZDS ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_EYSS0ZDS ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_EYYMKWB7 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_EYYMKWB7 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:129846804 8:130112322 FAM49B--ASAP1 BS_EYYMKWB7 ARRIBA frameshift 2 0 low [ChimerSeq,CCLE,FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.03Mb],LOCAL_REARRANGEMENT:-:[34975]],duplication FAM49B NA ASAP1 NA NA NA NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_EYYMKWB7 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_F4E8R9VY ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_F4E8R9VY ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:121483698 10:116948997 FGFR2--SHTN1 BS_F4E8R9VY ARRIBA in-frame 22 1 high [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr10:4.35Mb]],deletion FGFR2 NA SHTN1 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus NA NA NA +10:121483698 10:116948997 FGFR2--SHTN1 BS_F4E8R9VY STARFUSION in-frame 27 1 NA [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr10:4.35Mb]] FGFR2 NA SHTN1 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_F4E8R9VY ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19759323 13:19835689 PSPC1--ZMYM5 BS_F4E8R9VY ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_F4E8R9VY ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161710751 2:161620915 SLC4A10--SLC4A10 BS_F4E8R9VY ARRIBA other 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +1:62618706 1:62625401 DOCK7--DOCK7 BS_F5BZSF3Q ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing DOCK7 NA DOCK7 NA NA NA NA NA NA +12:110488909 12:110493231 FAM216A--VPS29 BS_F5BZSF3Q ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[712]],duplication/3'-3' FAM216A NA VPS29 NA NA NA NA NA NA +8:17341363 8:17373240 MTMR7--MTMR7 BS_F5BZSF3Q ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA +2:202311497 2:202297379 NOP58(7831)/RN7SL753P(21942)--NOP58 BS_F5BZSF3Q ARRIBA other 1 0 low [],duplication NOP58 RN7SL753P NOP58 NA NA NA NA NA NA +4:26764737 4:26637211 TBC1D19(9386)/STIM2(92941)--TBC1D19 BS_F5BZSF3Q ARRIBA other 1 0 low [],duplication TBC1D19 STIM2 TBC1D19 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_F6V1Y4QS ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_F6V1Y4QS ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +6:117566854 6:117321394 GOPC--ROS1 BS_F6V1Y4QS ARRIBA in-frame 61 0 high [chimerdb_pubmed,ChimerKB,ChimerPub,Cosmic,Mitelman,INTRACHROMOSOMAL[chr6:0.13Mb]],deletion/read-through GOPC NA ROS1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_F6V1Y4QS ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:148540556 3:161443601 SASH1--LINC02067 BS_F6V1Y4QS ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr6--chr3]],translocation SASH1 NA LINC02067 NA TumorSuppressorGene NA NA NA NA +6:52995916 14:20343396 7SK--AL355075.4 BS_F6Z5HFWH STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL355075.4 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_F6Z5HFWH ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_F6Z5HFWH ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_F6Z5HFWH STARFUSION other 16 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_F6Z5HFWH ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_F6Z5HFWH ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_F6Z5HFWH ARRIBA other 7 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +14:59369976 10:12172867 DAAM1--NUDT5 BS_F6Z5HFWH ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr14--chr10]],translocation DAAM1 NA NUDT5 NA NA NA NA NA NA +3:57357176 3:57363786 DNAH12--DNAH12 BS_F6Z5HFWH ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +6:24568781 6:24583702 KIAA0319--KIAA0319 BS_F6Z5HFWH ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing KIAA0319 NA KIAA0319 NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_F6Z5HFWH ARRIBA frameshift 10 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_F6Z5HFWH ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_F6Z5HFWH ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_F6Z5HFWH ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16323036 4:16288884 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_F6Z5HFWH ARRIBA other 3 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +5:110387266 5:110424916 TMEM232--TMEM232 BS_F6Z5HFWH ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA +9:70681506 9:70784279 TRPM3--TRPM3 BS_F6Z5HFWH ARRIBA in-frame 35 2 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_F8N6CFQE ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_F8N6CFQE ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +21:14825522 21:15043573 AF127577.4--NRIP1 BS_F8N6CFQE ARRIBA other 1 2 medium [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA +21:15014344 21:15043574 AF127577.4--NRIP1 BS_F8N6CFQE ARRIBA other 2 0 low [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_F8N6CFQE ARRIBA in-frame 7 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +1:58506060 1:58539310 DAB1--OMA1 BS_F8N6CFQE ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58536741 DAB1--OMA1 BS_F8N6CFQE ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58253807 1:58539310 DAB1--OMA1 BS_F8N6CFQE ARRIBA other 2 2 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58534331 DAB1--OMA1 BS_F8N6CFQE ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +17:44906802 14:49862779 GFAP--RN7SL2 BS_F8N6CFQE STARFUSION other 6 7 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_F8N6CFQE ARRIBA in-frame 7 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +21:14825522 21:15043573 LINC02246--NRIP1 BS_F8N6CFQE ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr21:0.04Mb],LOCAL_REARRANGEMENT:-:[42683]],duplication LINC02246 NA NRIP1 NA NA Oncogene NA NA NA +1:98054503 1:98684885 MIR137HG(4640)/NFU1P2(22497)--SNX7 BS_F8N6CFQE ARRIBA other 1 1 medium [],deletion MIR137HG NFU1P2 SNX7 NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_F8N6CFQE ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_F8N6CFQE ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_F8N6CFQE ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_F8N6CFQE ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +6:52995790 14:49862671 7SK--RN7SL2 BS_F9WKPDFG STARFUSION other 4 4 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_F9WKPDFG STARFUSION other 11 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +X:36014912 X:35966565 CFAP47--CFAP47 BS_F9WKPDFG ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +3:57382262 3:57385429 DNAH12--DNAH12 BS_F9WKPDFG ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +4:83448783 4:83469151 HELQ--ABRAXAS1 BS_F9WKPDFG ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr4:0.00Mb],LOCAL_REARRANGEMENT:-:[3661]],duplication HELQ NA ABRAXAS1 NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_F9WKPDFG ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +14:49862560 6:52995632 RN7SL2--7SK BS_F9WKPDFG STARFUSION other 6 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862560 6:52995743 RN7SL2--7SK BS_F9WKPDFG STARFUSION other 5 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862569 6:52995745 RN7SL2--7SK BS_F9WKPDFG STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862566 6:52995633 RN7SL2--7SK BS_F9WKPDFG STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862572 6:52995737 RN7SL2--7SK BS_F9WKPDFG STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +3:184014264 3:85323893 ABCC5--CADM2 BS_FAQQ0GCQ ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr3:97.85Mb]],deletion/5'-5' ABCC5 NA CADM2 NA NA TumorSuppressorGene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_FAQQ0GCQ ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_FAQQ0GCQ ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:195958926 3:195960086 AC124944.3(4441)/SDHAP1(822)--SDHAP1 BS_FAQQ0GCQ ARRIBA other 1 1 low [],duplication AC124944.3 SDHAP1 SDHAP1 NA NA NA NA NA NA +3:197619740 3:24337371 AC132008.2--THRB BS_FAQQ0GCQ ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr3:173.08Mb]],deletion AC132008.2 NA THRB NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +3:132659603 3:122341439 ACAD11--CSTA BS_FAQQ0GCQ ARRIBA frameshift 7 2 high [INTRACHROMOSOMAL[chr3:10.22Mb]],inversion ACAD11 NA CSTA NA NA Oncogene NA NA NA +3:148698127 3:118683772 AGTR1--AC068633.1(126104)/IGSF11(216785) BS_FAQQ0GCQ ARRIBA other 2 0 medium [],inversion AGTR1 NA AC068633.1 IGSF11 TumorSuppressorGene NA NA NA NA +3:105367481 3:49001438 ALCAM--P4HTM BS_FAQQ0GCQ ARRIBA in-frame 10 0 high [INTRACHROMOSOMAL[chr3:56.36Mb]],duplication ALCAM NA P4HTM NA NA NA NA NA NA +3:43565653 3:15630187 ANO10--BTD BS_FAQQ0GCQ ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr3:27.71Mb]],deletion/5'-5' ANO10 NA BTD NA NA NA NA NA NA +3:56958823 3:17042913 ARHGEF3--PLCL2-AS1 BS_FAQQ0GCQ ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr3:39.68Mb]],deletion ARHGEF3 NA PLCL2-AS1 NA NA NA NA NA NA +3:69085223 3:48985389 ARL6IP5--AC137630.1 BS_FAQQ0GCQ ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr3:20.09Mb]],inversion ARL6IP5 NA AC137630.1 NA TumorSuppressorGene NA NA NA NA +3:69085223 3:48985701 ARL6IP5--AC137630.4 BS_FAQQ0GCQ ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr3:20.10Mb]],inversion ARL6IP5 NA AC137630.4 NA TumorSuppressorGene NA NA NA NA +3:69085223 3:48985701 ARL6IP5--ARIH2 BS_FAQQ0GCQ ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr3:20.10Mb]],inversion/3'-3' ARL6IP5 NA ARIH2 NA TumorSuppressorGene NA NA NA NA +3:11380052 3:115302568 ATG7--AC046136.1 BS_FAQQ0GCQ ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:103.69Mb]],inversion/3'-3' ATG7 NA AC046136.1 NA NA NA NA NA NA +3:138915856 3:123740001 ATP5G1P3(25899)/LINC01391(19333)--MYLK BS_FAQQ0GCQ ARRIBA other 3 0 high [],deletion ATP5G1P3 LINC01391 MYLK NA NA Kinase NA NA NA +3:63913225 3:54627787 ATXN7--CACNA2D3 BS_FAQQ0GCQ ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr3:8.79Mb]],duplication ATXN7 NA CACNA2D3 NA NA TumorSuppressorGene NA NA NA +3:63912923 3:54627787 ATXN7--CACNA2D3 BS_FAQQ0GCQ ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:8.79Mb]],duplication ATXN7 NA CACNA2D3 NA NA TumorSuppressorGene NA NA NA +3:54764351 3:81920810 CACNA2D3--AC129807.1 BS_FAQQ0GCQ ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr3:26.77Mb]],inversion/3'-3' CACNA2D3 NA AC129807.1 NA TumorSuppressorGene NA NA NA NA +3:54764351 3:197593159 CACNA2D3--AC132008.2 BS_FAQQ0GCQ ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr3:142.50Mb]],inversion CACNA2D3 NA AC132008.2 NA TumorSuppressorGene NA NA NA NA +3:54642241 3:63898399 CACNA2D3--ATXN7 BS_FAQQ0GCQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:8.79Mb]],deletion CACNA2D3 NA ATXN7 NA TumorSuppressorGene NA NA NA NA +3:54764351 3:63898399 CACNA2D3--ATXN7 BS_FAQQ0GCQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:8.79Mb]],deletion CACNA2D3 NA ATXN7 NA TumorSuppressorGene NA NA NA NA +3:54764351 3:82022788 CACNA2D3--LINC02008 BS_FAQQ0GCQ ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr3:26.91Mb]],inversion/3'-3' CACNA2D3 NA LINC02008 NA TumorSuppressorGene NA NA NA NA +3:49869758 3:141147142 CAMKV--SPSB4 BS_FAQQ0GCQ ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr3:91.18Mb]],inversion CAMKV NA SPSB4 NA Kinase NA NA NA NA +3:56594028 3:41625422 CCDC66--ULK4 BS_FAQQ0GCQ ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:14.59Mb]],duplication/5'-5' CCDC66 NA ULK4 NA NA Kinase, Kinase NA NA NA +9:22127402 9:22046751 CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_FAQQ0GCQ ARRIBA other 3 0 medium [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +3:149748160 3:105796643 COMMD2--CBLB BS_FAQQ0GCQ ARRIBA frameshift 24 3 medium [INTRACHROMOSOMAL[chr3:43.87Mb]],inversion/5'-5' COMMD2 NA CBLB NA NA CosmicCensus, Oncogene NA NA NA +3:139379047 3:129671264 COPB2--TMCC1 BS_FAQQ0GCQ ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr3:9.46Mb]],deletion COPB2 NA TMCC1 NA NA NA NA NA NA +3:139379380 3:129671264 COPB2--TMCC1 BS_FAQQ0GCQ ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr3:9.46Mb]],deletion COPB2 NA TMCC1 NA NA NA NA NA NA +3:122872597 3:26709513 DIRC2--LRRC3B BS_FAQQ0GCQ ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr3:96.08Mb]],duplication DIRC2 NA LRRC3B NA Oncogene TumorSuppressorGene NA NA NA +3:122872597 3:26701225 DIRC2--LRRC3B BS_FAQQ0GCQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:96.08Mb]],duplication DIRC2 NA LRRC3B NA Oncogene TumorSuppressorGene NA NA NA +3:56007181 3:141921977 ERC2--ATP1B3 BS_FAQQ0GCQ ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr3:85.41Mb]],inversion ERC2 NA ATP1B3 NA Oncogene NA NA NA NA +3:42979645 3:170038915 FAM198A--GPR160 BS_FAQQ0GCQ ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr3:126.98Mb]],deletion FAM198A NA GPR160 NA NA NA NA NA NA +3:192727181 3:155060817 FGF12--MME BS_FAQQ0GCQ ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:36.96Mb]],deletion/5'-5' FGF12 NA MME NA Oncogene TumorSuppressorGene, Oncogene NA NA NA +3:172307501 3:184044456 FNDC3B--EEF1A1P8 BS_FAQQ0GCQ ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr3:11.62Mb]],inversion FNDC3B NA EEF1A1P8 NA NA NA NA NA NA +3:71493426 3:153386016 FOXP1--LINC02006 BS_FAQQ0GCQ ARRIBA other 2 2 high [INTRACHROMOSOMAL[chr3:81.80Mb]],duplication FOXP1 NA LINC02006 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +3:149063431 3:195840117 HLTF--LINC01983 BS_FAQQ0GCQ ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:46.75Mb]],duplication HLTF NA LINC01983 NA TumorSuppressorGene, Oncogene NA NA NA NA +3:108213931 3:63633607 IFT57--SYNPR(16686)/SNTN(19061) BS_FAQQ0GCQ ARRIBA frameshift 7 0 high [],deletion IFT57 NA SYNPR SNTN NA NA NA NA NA +3:48695249 3:64180458 IP6K2--PRICKLE2 BS_FAQQ0GCQ ARRIBA frameshift 4 0 low [INTRACHROMOSOMAL[chr3:15.35Mb]],inversion/5'-5' IP6K2 NA PRICKLE2 NA NA NA NA NA NA +3:121826051 3:56673725 IQCB1--FAM208A BS_FAQQ0GCQ ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr3:65.09Mb]],deletion IQCB1 NA FAM208A NA NA NA NA NA NA +3:12967387 3:110893830 IQSEC1--NECTIN3-AS1 BS_FAQQ0GCQ ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr3:97.82Mb]],duplication IQSEC1 NA NECTIN3-AS1 NA NA NA NA NA NA +3:13072992 3:110893830 IQSEC1--NECTIN3-AS1 BS_FAQQ0GCQ ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr3:97.82Mb]],duplication IQSEC1 NA NECTIN3-AS1 NA NA NA NA NA NA +3:20072459 3:82297040 KAT2B--LINC02008 BS_FAQQ0GCQ ARRIBA frameshift 13 2 high [INTRACHROMOSOMAL[chr3:61.83Mb]],inversion/3'-3' KAT2B NA LINC02008 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_FAQQ0GCQ ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:197791540 3:10039279 LRCH3--FANCD2 BS_FAQQ0GCQ ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr3:187.69Mb]],duplication LRCH3 NA FANCD2 NA NA CosmicCensus, Oncogene NA NA NA +3:197791540 3:10039721 LRCH3--FANCD2 BS_FAQQ0GCQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:187.69Mb]],duplication LRCH3 NA FANCD2 NA NA CosmicCensus, Oncogene NA NA NA +3:66500190 3:197773403 LRIG1--FYTTD1 BS_FAQQ0GCQ ARRIBA in-frame 4 3 high [INTRACHROMOSOMAL[chr3:131.24Mb]],inversion LRIG1 NA FYTTD1 NA TumorSuppressorGene, Oncogene NA NA NA NA +3:127821694 3:55511276 MGLL--ERC2 BS_FAQQ0GCQ ARRIBA frameshift 6 2 medium [INTRACHROMOSOMAL[chr3:71.22Mb]],deletion MGLL NA ERC2 NA NA Oncogene NA NA NA +3:113721545 3:57494508 NAA50--DNAH12 BS_FAQQ0GCQ ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr3:56.17Mb]],inversion/5'-5' NAA50 NA DNAH12 NA NA NA NA NA NA +3:173605091 3:160622759 NLGN1--RPL6P8(36972)/ARL14(54400) BS_FAQQ0GCQ ARRIBA frameshift 3 0 high [],duplication NLGN1 NA RPL6P8 ARL14 NA NA NA NA NA +3:33828969 3:141287314 PDCD6IP--PXYLP1 BS_FAQQ0GCQ ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr3:107.36Mb]],deletion PDCD6IP NA PXYLP1 NA NA NA NA NA NA +3:129557346 3:52474930 PLXND1--NISCH BS_FAQQ0GCQ ARRIBA other 6 1 medium [INTRACHROMOSOMAL[chr3:77.06Mb]],deletion/5'-5' PLXND1 NA NISCH NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_FAQQ0GCQ ARRIBA frameshift 2 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_FAQQ0GCQ ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +3:61562372 3:193442556 PTPRG--ATP13A4 BS_FAQQ0GCQ ARRIBA in-frame 4 3 high [INTRACHROMOSOMAL[chr3:131.10Mb]],inversion PTPRG NA ATP13A4 NA Oncogene NA NA NA NA +3:61562372 3:31733411 PTPRG--OSBPL10 BS_FAQQ0GCQ ARRIBA in-frame 8 0 high [INTRACHROMOSOMAL[chr3:29.48Mb]],inversion PTPRG NA OSBPL10 NA Oncogene NA NA NA NA +3:61562372 3:31702508 PTPRG--OSBPL10 BS_FAQQ0GCQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:29.48Mb]],inversion PTPRG NA OSBPL10 NA Oncogene NA NA NA NA +3:58333090 3:64198967 PXK--PRICKLE2 BS_FAQQ0GCQ ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr3:5.67Mb]],inversion PXK NA PRICKLE2 NA NA NA NA NA NA +3:141231911 3:142355496 PXYLP1--XRN1 BS_FAQQ0GCQ ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr3:0.94Mb]],inversion PXYLP1 NA XRN1 NA NA NA NA NA NA +3:141232435 3:142355496 PXYLP1--XRN1 BS_FAQQ0GCQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:0.94Mb]],inversion PXYLP1 NA XRN1 NA NA NA NA NA NA +3:12663813 3:176241709 RAF1--AC117434.1(127172)/MIR7977(273394) BS_FAQQ0GCQ ARRIBA other 27 1 high [],inversion RAF1 NA AC117434.1 MIR7977 Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +3:29936196 3:118683772 RBMS3--AC068633.1(126104)/IGSF11(216785) BS_FAQQ0GCQ ARRIBA frameshift 3 0 high [],inversion RBMS3 NA AC068633.1 IGSF11 TumorSuppressorGene NA NA NA NA +3:149872154 3:2812990 RNF13--CNTN4 BS_FAQQ0GCQ ARRIBA frameshift 4 2 high [INTRACHROMOSOMAL[chr3:146.75Mb]],inversion/3'-3' RNF13 NA CNTN4 NA NA Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_FAQQ0GCQ ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:47113876 3:79022388 SETD2--ROBO1 BS_FAQQ0GCQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:31.43Mb]],duplication SETD2 NA ROBO1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA NA +3:15330504 3:197546486 SH3BP5--BDH1 BS_FAQQ0GCQ ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr3:182.17Mb]],duplication SH3BP5 NA BDH1 NA NA NA NA NA NA +3:15330504 3:197533561 SH3BP5--BDH1 BS_FAQQ0GCQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:182.17Mb]],duplication SH3BP5 NA BDH1 NA NA NA NA NA NA +3:27411642 3:187042771 SLC4A7--ST6GAL1 BS_FAQQ0GCQ ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr3:159.45Mb]],duplication/5'-5' SLC4A7 NA ST6GAL1 NA NA Oncogene NA NA NA +3:57757849 3:124395135 SLMAP--KALRN BS_FAQQ0GCQ ARRIBA in-frame 6 1 high [INTRACHROMOSOMAL[chr3:66.15Mb]],deletion SLMAP NA KALRN NA NA Kinase NA NA NA +3:9248885 3:149333399 SRGAP3--TM4SF18 BS_FAQQ0GCQ ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr3:140.07Mb]],duplication SRGAP3 NA TM4SF18 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +3:9248885 3:149333609 SRGAP3--TM4SF18 BS_FAQQ0GCQ ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr3:140.07Mb]],duplication SRGAP3 NA TM4SF18 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +3:4410865 3:133466828 SUMF1--BFSP2 BS_FAQQ0GCQ ARRIBA in-frame 49 2 high [INTRACHROMOSOMAL[chr3:128.93Mb]],inversion SUMF1 NA BFSP2 NA NA Oncogene NA NA NA +3:4410865 3:133466828 SUMF1--BFSP2 BS_FAQQ0GCQ STARFUSION in-frame 49 2 NA [INTRACHROMOSOMAL[chr3:128.93Mb]] SUMF1 NA BFSP2 NA NA Oncogene NA NA NA +3:177197121 3:113980793 TBL1XR1--CCDC191 BS_FAQQ0GCQ ARRIBA other 12 0 high [INTRACHROMOSOMAL[chr3:62.96Mb]],deletion TBL1XR1 NA CCDC191 NA CosmicCensus NA NA NA NA +3:177131363 3:113980793 TBL1XR1--CCDC191 BS_FAQQ0GCQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:62.96Mb]],deletion TBL1XR1 NA CCDC191 NA CosmicCensus NA NA NA NA +3:177196340 3:113980793 TBL1XR1--CCDC191 BS_FAQQ0GCQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:62.96Mb]],deletion TBL1XR1 NA CCDC191 NA CosmicCensus NA NA NA NA +3:177197121 3:113980793 TBL1XR1--CCDC191 BS_FAQQ0GCQ STARFUSION other 16 1 NA [INTRACHROMOSOMAL[chr3:62.96Mb]] TBL1XR1 NA CCDC191 NA CosmicCensus NA NA NA NA +3:133046020 3:97016037 TMEM108--EPHA6 BS_FAQQ0GCQ ARRIBA other 8 0 high [INTRACHROMOSOMAL[chr3:35.29Mb]],inversion/3'-3' TMEM108 NA EPHA6 NA NA Kinase, Kinase NA NA NA +3:52842811 3:126852647 TMEM110--CHCHD6 BS_FAQQ0GCQ ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr3:73.81Mb]],inversion TMEM110 NA CHCHD6 NA NA NA NA NA NA +3:52842811 3:126852647 TMEM110-MUSTN1--CHCHD6 BS_FAQQ0GCQ ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr3:73.81Mb]],inversion TMEM110-MUSTN1 NA CHCHD6 NA NA NA NA NA NA +3:42189124 3:3601235 TRAK1--AC034195.1 BS_FAQQ0GCQ ARRIBA frameshift 10 6 high [INTRACHROMOSOMAL[chr3:38.39Mb]],inversion TRAK1 NA AC034195.1 NA NA NA NA NA NA +3:69062982 3:77477414 UBA3--ROBO2 BS_FAQQ0GCQ ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:6.83Mb]],inversion UBA3 NA ROBO2 NA NA CosmicCensus NA NA NA +3:23217312 3:120367801 UBE2E2--AC063952.1 BS_FAQQ0GCQ ARRIBA frameshift 2 2 high [INTRACHROMOSOMAL[chr3:96.76Mb]],deletion UBE2E2 NA AC063952.1 NA NA NA NA NA NA +3:125313308 3:101870083 ZNF148--NFKBIZ(9061)/LINC02085(70776) BS_FAQQ0GCQ ARRIBA frameshift 3 0 high [],deletion ZNF148 NA NFKBIZ LINC02085 TranscriptionFactor NA NA NA NA +3:107380585 3:107462735 AC063944.1--LINC01990 BS_FAVRBEW7 ARRIBA other 11 0 high [INTRACHROMOSOMAL[chr3:0.01Mb],LOCAL_INVERSION:-:+:[9626]],duplication/5'-5' AC063944.1 NA LINC01990 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_FAVRBEW7 ARRIBA other 23 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +3:167140689 3:167282495 AC092965.1(74369)/ZBBX(99598)--ZBBX BS_FAVRBEW7 ARRIBA other 7 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +3:167140689 3:167282495 AC092965.1(74369)/ZBBX(99598)--ZBBX BS_FAVRBEW7 ARRIBA other 2 1 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +4:16434138 4:16238771 AC097515.1--TAPT1-AS1 BS_FAVRBEW7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16238771 AC097515.1--TAPT1-AS1 BS_FAVRBEW7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16421133 4:16238771 AC097515.1--TAPT1-AS1 BS_FAVRBEW7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16256257 AC097515.1--TAPT1-AS1 BS_FAVRBEW7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16288884 AC097515.1--TAPT1-AS1 BS_FAVRBEW7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_FAVRBEW7 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +6:19306237 6:19325798 AL357052.1--AL022068.1 BS_FAVRBEW7 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr6:0.00Mb],LOCAL_REARRANGEMENT:-:[3967]],duplication AL357052.1 NA AL022068.1 NA NA NA NA NA NA +1:15369502 1:15367463 FHAD1--FHAD1 BS_FAVRBEW7 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA +1:210387581 1:210321630 HHAT--AL035414.1(17090)/HHAT(6622) BS_FAVRBEW7 ARRIBA frameshift 3 1 high [],duplication HHAT NA AL035414.1 HHAT NA NA NA NA NA +2:24246129 2:24303862 ITSN2--ITSN2 BS_FAVRBEW7 ARRIBA in-frame 7 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.16Mb]],duplication/non-canonical_splicing ITSN2 NA ITSN2 NA NA NA NA NA NA +6:97085341 6:97041492 KLHL32--KLHL32 BS_FAVRBEW7 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing KLHL32 NA KLHL32 NA NA NA NA NA NA +17:77776329 11:72094948 LINC01987(47770)/LINC01973(102698)--LRTOMT BS_FAVRBEW7 ARRIBA other 8 0 medium [],translocation LINC01987 LINC01973 LRTOMT NA NA NA NA NA NA +14:60019260 14:59997656 LRRC9--LRRC9 BS_FAVRBEW7 ARRIBA frameshift 45 3 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +13:52123838 12:95842555 NEK5--AC090001.1 BS_FAVRBEW7 ARRIBA frameshift 6 1 medium [INTERCHROMOSOMAL[chr13--chr12]],translocation NEK5 NA AC090001.1 NA Kinase, Kinase NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_FAVRBEW7 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +8:32029485 8:31865615 NRG1-IT1--NRG1 BS_FAVRBEW7 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr8:0.11Mb]],duplication NRG1-IT1 NA NRG1 NA NA CosmicCensus NA NA NA +15:76009200 15:76052983 NRG4--NRG4 BS_FAVRBEW7 ARRIBA frameshift 7 3 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_FAVRBEW7 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +20:49823141 7:20669998 SLC9A8--ABCB5 BS_FAVRBEW7 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr20--chr7]],translocation/5'-5' SLC9A8 NA ABCB5 NA NA Oncogene NA NA NA +1:118039292 1:118087008 SPAG17--SPAG17 BS_FAVRBEW7 ARRIBA frameshift 16 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing SPAG17 NA SPAG17 NA NA NA NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_FAVRBEW7 ARRIBA other 3 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +4:16328660 4:16238771 TAPT1-AS1(8520)/ZEB2P1(32026)--TAPT1-AS1 BS_FAVRBEW7 ARRIBA other 2 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:119685754 2:119604672 TMEM177--CFAP221 BS_FAVRBEW7 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:+:[16916]],duplication TMEM177 NA CFAP221 NA NA NA NA NA NA +8:93831572 8:93786223 TMEM67(12338)/AC084346.1(2882)--TMEM67 BS_FAVRBEW7 ARRIBA other 1 5 medium [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +13:52223239 13:52233144 TPTE2P2--TPTE2P2 BS_FAVRBEW7 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.11Mb]],duplication/non-canonical_splicing TPTE2P2 NA TPTE2P2 NA NA NA NA NA NA +9:70827847 9:70864511 TRPM3--TRPM3 BS_FAVRBEW7 ARRIBA frameshift 30 7 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_FBJ5Q54N ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_FBJ5Q54N ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:49586857 14:20343258 AL139099.5--AL355075.4 BS_FBJ5Q54N STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586857 14:20343258 AL139099.5--RPPH1 BS_FBJ5Q54N STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +10:22329448 10:22826755 BMI1--RNU6-413P(39256)/ARMC3(101269) BS_FBJ5Q54N ARRIBA frameshift 144 24 high [],deletion BMI1 NA RNU6-413P ARMC3 Oncogene NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_FBJ5Q54N ARRIBA frameshift 34 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +10:22329448 10:22826755 COMMD3-BMI1--RNU6-413P(39256)/ARMC3(101269) BS_FBJ5Q54N ARRIBA frameshift 144 24 high [],deletion COMMD3-BMI1 NA RNU6-413P ARMC3 NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_FBJ5Q54N ARRIBA other 2 0 low [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +14:49586857 14:20343258 RN7SL1--AL355075.4 BS_FBJ5Q54N STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586856 14:20343255 RN7SL1--RPPH1 BS_FBJ5Q54N STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_FBJ5Q54N ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +17:72185454 17:72186404 SOX9-AS1--SOX9-AS1 BS_FBJ5Q54N ARRIBA other 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication SOX9-AS1 NA SOX9-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_FCAKKZ20 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_FCAKKZ20 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:85585823 2:43578607 AKAP13--THADA BS_FCAKKZ20 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr15--chr2]],translocation AKAP13 NA THADA NA Oncogene Oncogene NA NA NA +X:47604978 X:48926050 AL009172.2--OTUD5 BS_FCAKKZ20 STARFUSION other 20 2 NA [INTRACHROMOSOMAL[chrX:1.30Mb]] AL009172.2 NA OTUD5 NA NA NA NA NA NA +17:30857112 17:9525996 ATAD5--STX8 BS_FCAKKZ20 ARRIBA frameshift 10 1 high [INTRACHROMOSOMAL[chr17:21.26Mb]],duplication/5'-5' ATAD5 NA STX8 NA NA NA NA NA NA +X:21374961 X:2794535 CNKSR2--XG BS_FCAKKZ20 ARRIBA in-frame 154 14 high [INTRACHROMOSOMAL[chrX:18.56Mb]],duplication CNKSR2 NA XG NA NA NA NA NA NA +X:21374961 X:2811336 CNKSR2--XG BS_FCAKKZ20 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chrX:18.56Mb]],duplication CNKSR2 NA XG NA NA NA NA NA NA +X:21374961 X:2814364 CNKSR2--XG BS_FCAKKZ20 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chrX:18.56Mb]],duplication CNKSR2 NA XG NA NA NA NA NA NA +X:21374961 X:2794535 CNKSR2--XG BS_FCAKKZ20 STARFUSION in-frame 169 15 NA [INTRACHROMOSOMAL[chrX:18.56Mb]] CNKSR2 NA XG NA NA NA NA NA NA +17:28766586 17:28381203 FAM222B--AC002094.1 BS_FCAKKZ20 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr17:0.37Mb]],inversion FAM222B NA AC002094.1 NA NA NA NA NA NA +17:28766586 17:28381203 FAM222B--SARM1 BS_FCAKKZ20 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr17:0.35Mb]],inversion FAM222B NA SARM1 NA NA NA NA NA NA +X:14532372 X:11984756 GLRA2--MSL3(209003)/Y_RNA(70068) BS_FCAKKZ20 ARRIBA frameshift 4 1 high [],inversion GLRA2 NA MSL3 Y_RNA NA NA NA NA NA +X:14532372 X:12030507 GLRA2--MSL3(254754)/Y_RNA(24317) BS_FCAKKZ20 ARRIBA frameshift 14 2 high [],inversion GLRA2 NA MSL3 Y_RNA NA NA NA NA NA +X:14796160 X:14869043 GLRA2(64348)/NPM1P9(38316)--FANCB BS_FCAKKZ20 ARRIBA other 1 2 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +X:13938507 X:38172057 GPM6B--SRPX BS_FCAKKZ20 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chrX:24.21Mb]],duplication GPM6B NA SRPX NA NA TumorSuppressorGene NA NA NA +X:13938507 X:38164895 GPM6B--SRPX BS_FCAKKZ20 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chrX:24.21Mb]],duplication GPM6B NA SRPX NA NA TumorSuppressorGene NA NA NA +X:48997250 X:51357027 GRIPAP1--AC233976.1 BS_FCAKKZ20 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chrX:2.35Mb]],duplication GRIPAP1 NA AC233976.1 NA NA NA NA NA NA +X:48999238 X:51357027 GRIPAP1--AC233976.1 BS_FCAKKZ20 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chrX:2.35Mb]],duplication GRIPAP1 NA AC233976.1 NA NA NA NA NA NA +15:70984257 15:70900922 LRRC49--LRRC49 BS_FCAKKZ20 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.20Mb]],duplication/non-canonical_splicing LRRC49 NA LRRC49 NA NA NA NA NA NA +9:94446936 20:56513315 MFSD14B--RTFDC1 BS_FCAKKZ20 ARRIBA in-frame 14 3 high [INTERCHROMOSOMAL[chr9--chr20]],translocation MFSD14B NA RTFDC1 NA NA NA NA NA NA +9:94441099 20:56513315 MFSD14B--RTFDC1 BS_FCAKKZ20 ARRIBA in-frame 6 1 high [INTERCHROMOSOMAL[chr9--chr20]],translocation MFSD14B NA RTFDC1 NA NA NA NA NA NA +9:94446936 20:56513315 MFSD14B--RTFDC1 BS_FCAKKZ20 STARFUSION in-frame 16 3 NA [INTERCHROMOSOMAL[chr9--chr20]] MFSD14B NA RTFDC1 NA NA NA NA NA NA +17:17075787 17:19745134 MPRIP--ALDH3A1 BS_FCAKKZ20 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr17:2.52Mb]],inversion MPRIP NA ALDH3A1 NA NA NA NA NA NA +11:20078104 4:55766706 NAV2--NMU(130008)/RNU6-276P(31930) BS_FCAKKZ20 ARRIBA frameshift 2 0 medium [],translocation NAV2 NA NMU RNU6-276P NA NA NA NA NA +4:55754766 11:20077552 NMU(118068)/RNU6-276P(43870)--NAV2 BS_FCAKKZ20 ARRIBA other 2 0 low [],translocation NMU RNU6-276P NAV2 NA NA NA NA NA NA +15:88032857 7:10982372 NTRK3--PHF14 BS_FCAKKZ20 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr15--chr7]],translocation NTRK3 NA PHF14 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA +17:28950065 17:9946983 PHF12--GAS7 BS_FCAKKZ20 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr17:18.71Mb]],deletion PHF12 NA GAS7 NA NA CosmicCensus, Oncogene NA NA NA +X:7077220 X:23762582 PUDP--ACOT9 BS_FCAKKZ20 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chrX:16.55Mb]],duplication PUDP NA ACOT9 NA NA NA NA NA NA +X:7077220 X:23736016 PUDP--ACOT9 BS_FCAKKZ20 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chrX:16.55Mb]],duplication PUDP NA ACOT9 NA NA NA NA NA NA +17:17724159 17:12980058 RAI1--ARHGAP44 BS_FCAKKZ20 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr17:4.69Mb]],duplication RAI1 NA ARHGAP44 NA NA NA NA NA NA +17:17724159 17:19328711 RAI1--EPN2 BS_FCAKKZ20 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr17:1.40Mb]],deletion RAI1 NA EPN2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_FCAKKZ20 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +20:56484189 9:94451456 RTFDC1--MFSD14B BS_FCAKKZ20 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr20--chr9]],translocation RTFDC1 NA MFSD14B NA NA NA NA NA NA +X:18354592 X:23942401 SCML2--CXorf58(2894)/KLHL15(41319) BS_FCAKKZ20 ARRIBA other 4 0 medium [],inversion SCML2 NA CXorf58 KLHL15 NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_FCAKKZ20 ARRIBA other 11 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +17:9545172 17:30804108 STX8--CRLF3 BS_FCAKKZ20 ARRIBA frameshift 12 0 high [INTRACHROMOSOMAL[chr17:21.19Mb]],duplication STX8 NA CRLF3 NA NA NA NA NA NA +17:9545172 17:30797398 STX8--CRLF3 BS_FCAKKZ20 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:21.19Mb]],duplication STX8 NA CRLF3 NA NA NA NA NA NA +X:47604978 X:48926050 SYN1--OTUD5 BS_FCAKKZ20 ARRIBA in-frame 24 2 high [INTRACHROMOSOMAL[chrX:1.30Mb]],duplication SYN1 NA OTUD5 NA NA NA NA NA NA +X:47605223 X:48926050 SYN1--OTUD5 BS_FCAKKZ20 ARRIBA in-frame 1 2 medium [INTRACHROMOSOMAL[chrX:1.30Mb]],duplication SYN1 NA OTUD5 NA NA NA NA NA NA +X:47604978 X:48926050 SYN1--OTUD5 BS_FCAKKZ20 STARFUSION in-frame 27 2 NA [INTRACHROMOSOMAL[chrX:1.30Mb]] SYN1 NA OTUD5 NA NA NA NA NA NA +2:43581741 1:199957245 THADA--AL445687.2(47597)/RNU6-716P(51260) BS_FCAKKZ20 ARRIBA frameshift 4 0 medium [],translocation THADA NA AL445687.2 RNU6-716P Oncogene NA NA NA NA +7:135165596 7:110331817 TMEM140--AC073114.1(115437)/AC092167.1(100422) BS_FCAKKZ20 ARRIBA other 13 1 medium [],deletion TMEM140 NA AC073114.1 AC092167.1 NA NA NA NA NA +17:18299324 17:12367389 TOP3A--AC005244.2(152122)/LINC00670(182393) BS_FCAKKZ20 ARRIBA frameshift 2 1 medium [],inversion TOP3A NA AC005244.2 LINC00670 NA NA NA NA NA +X:38561627 X:7198671 TSPAN7--PUDP(50481)/STS(20785) BS_FCAKKZ20 ARRIBA frameshift 8 0 medium [],inversion TSPAN7 NA PUDP STS NA NA NA NA NA +X:16786589 X:48829081 TXLNG--ERAS BS_FCAKKZ20 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chrX:31.98Mb]],deletion TXLNG NA ERAS NA NA Oncogene NA NA NA +7:159142446 7:159175971 VIPR2--VIPR2(31014)/PIP5K1P2(55464) BS_FCAKKZ20 ARRIBA frameshift 3 0 high [],inversion VIPR2 NA VIPR2 PIP5K1P2 NA NA NA NA NA +X:47846321 X:39461487 ZNF81--AC091808.1(26663)/MIR3937(199729) BS_FCAKKZ20 ARRIBA frameshift 6 1 high [],duplication ZNF81 NA AC091808.1 MIR3937 TranscriptionFactor NA NA NA NA +14:72594327 14:72619984 AC004828.1--DPF3 BS_FEPRNEXX ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA +2:210035244 2:210015973 AC007038.1--RPE BS_FEPRNEXX ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA +2:210035244 2:210009657 AC007038.1--RPE BS_FEPRNEXX ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_FEPRNEXX ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_FEPRNEXX ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:155503021 7:155509097 AC009403.2--AC009403.2 BS_FEPRNEXX ARRIBA other 10 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA +5:176137278 5:176119545 AC139491.5--FAM153B BS_FEPRNEXX ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:+:[4899]],duplication AC139491.5 NA FAM153B NA NA NA NA NA NA +9:5719432 9:5914062 AL136980.1--KIAA2026 BS_FEPRNEXX ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr9:0.16Mb]],duplication AL136980.1 NA KIAA2026 NA NA NA NA NA NA +9:5720180 9:5914062 AL136980.1--KIAA2026 BS_FEPRNEXX ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr9:0.16Mb]],duplication AL136980.1 NA KIAA2026 NA NA NA NA NA NA +7:33650755 7:33604865 BBS9(44687)/AC008080.1(75226)--BBS9 BS_FEPRNEXX ARRIBA other 1 0 low [],duplication BBS9 AC008080.1 BBS9 NA NA NA NA NA NA +1:169806088 1:169798857 C1orf112--C1orf112 BS_FEPRNEXX ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.19Mb]],duplication/non-canonical_splicing C1orf112 NA C1orf112 NA NA NA NA NA NA +3:37386370 3:37378202 C3orf35--GOLGA4(11451)/C3orf35(8067) BS_FEPRNEXX ARRIBA other 1 0 low [],duplication C3orf35 NA GOLGA4 C3orf35 NA NA NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_FEPRNEXX ARRIBA in-frame 46 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_FEPRNEXX ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:15784694 9:15695235 CCDC171--CCDC171 BS_FEPRNEXX ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.51Mb]],duplication/non-canonical_splicing CCDC171 NA CCDC171 NA NA NA NA NA NA +18:65824831 18:65809704 CDH7--CDH7 BS_FEPRNEXX ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_FEPRNEXX ARRIBA other 83 12 high [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +21:26552127 21:26550319 CYYR1-AS1--CYYR1-AS1 BS_FEPRNEXX ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.18Mb]],duplication/non-canonical_splicing CYYR1-AS1 NA CYYR1-AS1 NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_FEPRNEXX ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_FEPRNEXX ARRIBA frameshift 9 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_FEPRNEXX ARRIBA in-frame 36 6 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +4:161759411 4:161776074 FSTL5--FSTL5 BS_FEPRNEXX ARRIBA in-frame 37 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +14:65751068 14:65721775 FUT8(6947)/AL391261.1(128524)--FUT8 BS_FEPRNEXX ARRIBA other 9 0 medium [],duplication FUT8 AL391261.1 FUT8 NA Oncogene Oncogene NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_FEPRNEXX ARRIBA frameshift 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_FEPRNEXX ARRIBA frameshift 52 5 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_FEPRNEXX ARRIBA frameshift 44 8 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_FEPRNEXX ARRIBA frameshift 58 4 high [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:43501322 7:43468920 HECW1--HECW1 BS_FEPRNEXX ARRIBA frameshift 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +6:12135892 6:12089184 HIVEP1--HIVEP1 BS_FEPRNEXX ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.16Mb]],duplication/non-canonical_splicing HIVEP1 NA HIVEP1 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_FEPRNEXX ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_FEPRNEXX ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_FEPRNEXX ARRIBA other 14 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +3:178748404 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_FEPRNEXX ARRIBA other 1 2 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_FEPRNEXX ARRIBA frameshift 4 2 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_FEPRNEXX ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +14:59475869 14:59565275 L3HYPDH--CCDC175 BS_FEPRNEXX ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59551436 L3HYPDH--CCDC175 BS_FEPRNEXX ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59479182 14:59565275 L3HYPDH--CCDC175 BS_FEPRNEXX ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59479182 14:59543454 L3HYPDH--CCDC175 BS_FEPRNEXX ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59521676 L3HYPDH--CCDC175 BS_FEPRNEXX ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +8:10477898 8:10445365 LINCR-0001--AC104964.2(7053)/LINCR-0001(29200) BS_FEPRNEXX ARRIBA other 2 0 low [],duplication LINCR-0001 NA AC104964.2 LINCR-0001 NA NA NA NA NA +17:45996664 17:45987040 MAPT--MAPT BS_FEPRNEXX ARRIBA frameshift 15 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_FEPRNEXX ARRIBA other 3 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +8:124555742 8:124558832 MTSS1--MTSS1 BS_FEPRNEXX ARRIBA frameshift 11 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_FEPRNEXX ARRIBA in-frame 16 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_FEPRNEXX ARRIBA frameshift 19 3 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_FEPRNEXX ARRIBA other 27 2 high [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +7:77951712 7:77920279 PHTF2--PHTF2 BS_FEPRNEXX ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_FEPRNEXX ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +12:70656704 12:70662605 PTPRR--PTPRR BS_FEPRNEXX ARRIBA frameshift 20 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_FEPRNEXX ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52142930 8:52166986 ST18--ST18 BS_FEPRNEXX ARRIBA frameshift 16 3 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_FEPRNEXX ARRIBA other 25 2 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +2:209881094 2:209877954 UNC80--UNC80 BS_FEPRNEXX ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +2:218509979 2:218546298 USP37--USP37 BS_FEPRNEXX ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.12Mb]],duplication/non-canonical_splicing USP37 NA USP37 NA NA NA NA NA NA +3:167500153 3:167664448 WDR49--WDR49(10465)/PDCD10(18850) BS_FEPRNEXX ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_FEV5A0HN ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_FEV5A0HN ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_FEV5A0HN ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +6:132134483 6:132098931 LINC01013--AL021408.1 BS_FEV5A0HN ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_FEV5A0HN ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:185288082 4:185258848 SNX25--SNX25 BS_FEV5A0HN ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.17Mb]],duplication/non-canonical_splicing SNX25 NA SNX25 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_FJWZ3M7V ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_FJWZ3M7V ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:60726410 1:60733522 AC099792.1--AC099792.1 BS_FJWZ3M7V ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing AC099792.1 NA AC099792.1 NA NA NA NA NA NA +5:65260600 5:65473952 ADAMTS6--ADAMTS6 BS_FJWZ3M7V ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.33Mb]],duplication/non-canonical_splicing ADAMTS6 NA ADAMTS6 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_FJWZ3M7V ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +17:7656768 14:49862815 ATP1B2--RN7SL2 BS_FJWZ3M7V STARFUSION other 15 3 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +9:22127402 9:22120200 CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_FJWZ3M7V ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_FJWZ3M7V STARFUSION other 17 14 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +3:178801793 3:178982465 KCNMB2-AS1--KCNMB2-AS1(122060)/ZMAT3(34758) BS_FJWZ3M7V ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_FJWZ3M7V ARRIBA in-frame 16 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138867975 7:140787584 KIAA1549--BRAF BS_FJWZ3M7V STARFUSION in-frame 13 2 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +1:149607554 1:143974544 LINC00869--FAM72C(2579)/SRGAP2D(543) BS_FJWZ3M7V ARRIBA other 3 0 medium [],duplication LINC00869 NA FAM72C SRGAP2D NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_FJWZ3M7V ARRIBA other 29 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:51794641 12:51786542 SCN8A--SCN8A BS_FJWZ3M7V ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.22Mb]],duplication/non-canonical_splicing SCN8A NA SCN8A NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_FJZPQZ2C ARRIBA other 52 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_FJZPQZ2C ARRIBA other 52 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93656437 15:93557472 AC110023.1--AC091078.1 BS_FJZPQZ2C ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_FJZPQZ2C ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93557472 AC110023.1--AC091078.1 BS_FJZPQZ2C ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +2:157760880 2:157774187 ACVR1--ACVR1 BS_FJZPQZ2C ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.14Mb]],duplication/non-canonical_splicing ACVR1 NA ACVR1 NA CosmicCensus, Kinase CosmicCensus, Kinase NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_FJZPQZ2C ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_FJZPQZ2C ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_FJZPQZ2C ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_FJZPQZ2C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_FJZPQZ2C ARRIBA frameshift 7 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_FJZPQZ2C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_FJZPQZ2C ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_FJZPQZ2C ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +2:232263440 2:232198527 DIS3L2--DIS3L2 BS_FJZPQZ2C ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication/non-canonical_splicing DIS3L2 NA DIS3L2 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_FJZPQZ2C ARRIBA in-frame 19 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:138242942 8:138256759 FAM135B--FAM135B BS_FJZPQZ2C ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +7:43501322 7:43468920 HECW1--HECW1 BS_FJZPQZ2C ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +2:89085180 2:88861561 IGKV3-15--AC244205.1 BS_FJZPQZ2C STARFUSION other 25 2 NA [INTRACHROMOSOMAL[chr2:0.22Mb]] IGKV3-15 NA AC244205.1 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_FJZPQZ2C ARRIBA frameshift 7 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_FJZPQZ2C ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_FJZPQZ2C ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_FJZPQZ2C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_FJZPQZ2C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_FJZPQZ2C ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_FJZPQZ2C ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_FJZPQZ2C ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_FJZPQZ2C ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +3:178801793 3:178965496 KCNMB2-AS1--KCNMB2-AS1(105091)/ZMAT3(51727) BS_FJZPQZ2C ARRIBA other 2 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178801793 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_FJZPQZ2C ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_FJZPQZ2C ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_FJZPQZ2C ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_FJZPQZ2C ARRIBA other 4 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +7:77922778 7:77840221 PHTF2--PHTF2 BS_FJZPQZ2C ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_FJZPQZ2C ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_FJZPQZ2C ARRIBA other 52 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_FJZPQZ2C ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +14:93487755 14:93466698 UNC79--UNC79 BS_FJZPQZ2C ARRIBA frameshift 6 0 medium [SELFIE,INTRACHROMOSOMAL[chr14:0.37Mb]],duplication UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA +8:127736623 8:127420963 MYC--CASC8 BS_FKDQJJB5 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.25Mb]],inversion MYC NA CASC8 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +16:70010751 16:14905379 PDXDC2P-NPIPB14P--AC136443.3(3205)/MIR3670-1(2338) BS_FKDQJJB5 ARRIBA other 2 0 medium [],deletion PDXDC2P-NPIPB14P NA AC136443.3 MIR3670-1 NA NA NA NA NA +8:127794734 8:127420963 PVT1_1--CASC8 BS_FKDQJJB5 ARRIBA other 15 1 medium [INTRACHROMOSOMAL[chr8:0.31Mb]],inversion PVT1_1 NA CASC8 NA NA NA NA NA NA +8:127794734 8:127290060 PVT1_1--CASC8 BS_FKDQJJB5 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr8:0.31Mb]],inversion PVT1_1 NA CASC8 NA NA NA NA NA NA +8:127794734 8:127323154 PVT1_1--CASC8 BS_FKDQJJB5 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr8:0.31Mb]],inversion PVT1_1 NA CASC8 NA NA NA NA NA NA +8:127794734 8:127420963 PVT1_1--CASC8 BS_FKDQJJB5 STARFUSION other 15 2 NA [INTRACHROMOSOMAL[chr8:0.31Mb]] PVT1_1 NA CASC8 NA NA NA NA NA NA +8:127794734 8:126877672 PVT1_1--PCAT1 BS_FKDQJJB5 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.77Mb]],duplication PVT1_1 NA PCAT1 NA NA NA NA NA NA +8:127794734 8:127006555 PVT1_1--PCAT1 BS_FKDQJJB5 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.77Mb]],duplication PVT1_1 NA PCAT1 NA NA NA NA NA NA +8:127794734 8:127420963 PVT1--CASC8 BS_FKDQJJB5 ARRIBA other 15 1 medium [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr8:0.31Mb]],inversion PVT1 NA CASC8 NA Oncogene NA NA NA NA +8:127794734 8:127290060 PVT1--CASC8 BS_FKDQJJB5 ARRIBA other 7 1 medium [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr8:0.31Mb]],inversion PVT1 NA CASC8 NA Oncogene NA NA NA NA +8:127794734 8:127323154 PVT1--CASC8 BS_FKDQJJB5 ARRIBA other 3 1 medium [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr8:0.31Mb]],inversion PVT1 NA CASC8 NA Oncogene NA NA NA NA +8:127890998 8:127290060 PVT1--CASC8 BS_FKDQJJB5 ARRIBA other 1 1 medium [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr8:0.31Mb]],inversion PVT1 NA CASC8 NA Oncogene NA NA NA NA +8:127794734 8:127420963 PVT1--CASC8 BS_FKDQJJB5 STARFUSION other 15 2 NA [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr8:0.31Mb]] PVT1 NA CASC8 NA Oncogene NA NA NA NA +8:127794734 8:126877864 PVT1--PCAT1 BS_FKDQJJB5 ARRIBA other 3 0 low [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.77Mb]],inversion/3'-3' PVT1 NA PCAT1 NA Oncogene NA NA NA NA +8:127989291 8:126877672 PVT1--PCAT1 BS_FKDQJJB5 ARRIBA other 2 0 low [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.77Mb]],duplication PVT1 NA PCAT1 NA Oncogene NA NA NA NA +8:127794734 8:126877672 PVT1--PCAT1 BS_FKDQJJB5 ARRIBA other 1 0 low [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.77Mb]],duplication PVT1 NA PCAT1 NA Oncogene NA NA NA NA +8:127794734 8:127006555 PVT1--PCAT1 BS_FKDQJJB5 ARRIBA other 1 0 low [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.77Mb]],duplication PVT1 NA PCAT1 NA Oncogene NA NA NA NA +8:127989291 8:127006555 PVT1--PCAT1 BS_FKDQJJB5 ARRIBA other 1 0 low [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.77Mb]],duplication PVT1 NA PCAT1 NA Oncogene NA NA NA NA +1:63774508 1:65364635 ROR1--DNAJC6 BS_FKDQJJB5 ARRIBA in-frame 1 0 low [ChimerPub,INTRACHROMOSOMAL[chr1:1.07Mb]],deletion ROR1 NA DNAJC6 NA Kinase, Kinase Oncogene NA NA NA +17:42345559 17:82108954 STAT3--CCDC57 BS_FKDQJJB5 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:39.71Mb]],duplication STAT3 NA CCDC57 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +17:42345559 17:82101866 STAT3--CCDC57 BS_FKDQJJB5 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:39.71Mb]],duplication STAT3 NA CCDC57 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +17:42345559 7:80646088 STAT3--CD36 BS_FKDQJJB5 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr17--chr7]],translocation STAT3 NA CD36 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +6:52995909 14:49862650 7SK--RN7SL2 BS_FQX1PRAJ STARFUSION other 4 9 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_FQX1PRAJ ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_FQX1PRAJ ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +12:32306122 12:32305697 BICD1--BICD1 BS_FQX1PRAJ ARRIBA in-frame 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing BICD1 NA BICD1 NA NA NA NA NA NA +5:128464724 5:128530693 FBN2--FBN2 BS_FQX1PRAJ ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.40Mb]],duplication/non-canonical_splicing FBN2 NA FBN2 NA NA NA NA NA NA +14:49862571 6:52995629 RN7SL2--7SK BS_FQX1PRAJ STARFUSION other 5 14 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_FQX1PRAJ ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_FQX1PRAJ ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +12:125186866 12:103987050 TMEM132B--TDG BS_FQX1PRAJ ARRIBA other 2 0 high [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA +6:52995916 14:49862665 7SK--RN7SL2 BS_FRM9TG02 STARFUSION other 8 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995821 14:49862667 7SK--RN7SL2 BS_FRM9TG02 STARFUSION other 4 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +12:32306122 12:32305697 BICD1--BICD1 BS_FRM9TG02 ARRIBA in-frame 12 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing BICD1 NA BICD1 NA NA NA NA NA NA +11:16655255 11:16645989 C11orf58--C11orf58 BS_FRM9TG02 ARRIBA other 2 1 medium [SELFIE,INTRACHROMOSOMAL[chr11:0.14Mb]],duplication C11orf58 NA C11orf58 NA NA NA NA NA NA +4:161455004 4:161500134 FSTL5--FSTL5 BS_FRM9TG02 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +12:124483596 12:124778586 NCOR2--SCARB1 BS_FRM9TG02 ARRIBA in-frame 66 8 high [YOSHIHARA_TCGA,FA_CancerSupp,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr12:0.21Mb]],duplication NCOR2 NA SCARB1 NA CosmicCensus, Oncogene Oncogene NA NA TCGAFusion +12:124483596 12:124778586 NCOR2--SCARB1 BS_FRM9TG02 STARFUSION in-frame 71 8 NA [YOSHIHARA_TCGA,FA_CancerSupp,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr12:0.21Mb]] NCOR2 NA SCARB1 NA CosmicCensus, Oncogene Oncogene NA NA TCGAFusion +9:35657768 14:49862664 RMRP--RN7SL2 BS_FRM9TG02 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL2 NA Oncogene NA NA NA NA +14:49862560 14:20343397 RN7SL2--AL355075.4 BS_FRM9TG02 STARFUSION other 4 11 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862557 14:20343380 RN7SL2--AL355075.4 BS_FRM9TG02 STARFUSION other 4 11 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862557 14:20343380 RN7SL2--RPPH1 BS_FRM9TG02 STARFUSION other 4 11 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_FRZ76GEG ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_FRZ76GEG ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_FRZ76GEG ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_FTKPQ5FZ ARRIBA in-frame 124 17 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662088 C11orf95--RELA BS_FTKPQ5FZ ARRIBA in-frame 9 11 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_FTKPQ5FZ ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_FTKPQ5FZ STARFUSION in-frame 138 21 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:65572748 11:63764531 FAM89B--C11orf95 BS_FTKPQ5FZ ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr11:1.80Mb]],inversion FAM89B NA C11orf95 NA NA NA NA NA NA +11:65572748 11:63764531 FAM89B--C11orf95 BS_FTKPQ5FZ STARFUSION frameshift 6 0 NA [INTRACHROMOSOMAL[chr11:1.80Mb]] FAM89B NA C11orf95 NA NA NA NA NA NA +11:65572748 11:63764531 SSSCA1--C11orf95 BS_FTKPQ5FZ ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr11:1.80Mb]],inversion SSSCA1 NA C11orf95 NA NA NA NA NA NA +11:65572748 11:63764531 SSSCA1--C11orf95 BS_FTKPQ5FZ STARFUSION other 6 1 NA [INTRACHROMOSOMAL[chr11:1.80Mb]] SSSCA1 NA C11orf95 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_FW5ECXXK ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_FW5ECXXK ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_FW5ECXXK ARRIBA frameshift 13 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_FW5ECXXK ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_FW5ECXXK ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_FW5ECXXK ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_FW5ECXXK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +12:132735092 11:110204158 ANKLE2--RDX BS_FW5ECXXK ARRIBA other 8 2 medium [INTERCHROMOSOMAL[chr12--chr11]],translocation/5'-5' ANKLE2 NA RDX NA NA NA NA NA NA +11:65034962 11:64077016 ARL2-SNX15--MACROD1 BS_FW5ECXXK ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr11:0.85Mb]],inversion ARL2-SNX15 NA MACROD1 NA NA Oncogene NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_FW5ECXXK ARRIBA in-frame 81 20 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_FW5ECXXK ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_FW5ECXXK STARFUSION in-frame 81 21 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +1:231818517 1:231795242 DISC1--TSNAX-DISC1 BS_FW5ECXXK ARRIBA frameshift 5 2 medium [INTRACHROMOSOMAL[chr1:0.19Mb]],duplication DISC1 NA TSNAX-DISC1 NA NA NA NA NA NA +1:231818517 1:231818329 DISC1--TSNAX-DISC1 BS_FW5ECXXK ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.19Mb]],duplication DISC1 NA TSNAX-DISC1 NA NA NA NA NA NA +1:231771070 1:231701955 DISC1--TSNAX-DISC1 BS_FW5ECXXK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.19Mb]],duplication DISC1 NA TSNAX-DISC1 NA NA NA NA NA NA +11:86277991 6:69233290 EED--ADGRB3 BS_FW5ECXXK ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr11--chr6]],translocation EED NA ADGRB3 NA TumorSuppressorGene, CosmicCensus NA NA NA NA +11:31650221 11:110199678 ELP4--RDX BS_FW5ECXXK ARRIBA frameshift 1 3 high [INTRACHROMOSOMAL[chr11:78.38Mb]],inversion ELP4 NA RDX NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_FW5ECXXK ARRIBA in-frame 32 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +11:126241044 11:64081692 FAM118B--AP006333.2 BS_FW5ECXXK ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr11:62.12Mb]],duplication FAM118B NA AP006333.2 NA NA NA NA NA NA +11:126241044 11:64081692 FAM118B--AP006333.2 BS_FW5ECXXK STARFUSION other 9 0 NA [INTRACHROMOSOMAL[chr11:62.12Mb]] FAM118B NA AP006333.2 NA NA NA NA NA NA +11:72900257 11:64448268 FCHSD2--AP003774.2(15598)/AP003774.1(806) BS_FW5ECXXK ARRIBA frameshift 1 1 medium [],deletion FCHSD2 NA AP003774.2 AP003774.1 NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_FW5ECXXK ARRIBA frameshift 13 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:211082898 KCNH1--AL590132.1 BS_FW5ECXXK ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_FW5ECXXK ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_FW5ECXXK ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_FW5ECXXK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_FW5ECXXK ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_FW5ECXXK ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:210920069 KCNH1--AL590132.1 BS_FW5ECXXK ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_FW5ECXXK ARRIBA frameshift 13 4 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_FW5ECXXK ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_FW5ECXXK ARRIBA other 6 2 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--METTL12 BS_FW5ECXXK STARFUSION other 6 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--SNORA57 BS_FW5ECXXK STARFUSION other 6 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_FW5ECXXK ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:96336717 6:69476223 SLC35D2--ADGRB3(86712)/LMBRD1(199579) BS_FW5ECXXK ARRIBA frameshift 4 0 medium [],translocation SLC35D2 NA ADGRB3 LMBRD1 NA NA NA NA NA +11:65034962 11:64077016 SNX15--AP000721.2 BS_FW5ECXXK ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr11:0.92Mb]],inversion/3'-3' SNX15 NA AP000721.2 NA NA NA NA NA NA +11:65034962 11:64077016 SNX15--MACROD1 BS_FW5ECXXK ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr11:0.86Mb]],inversion SNX15 NA MACROD1 NA NA Oncogene NA NA NA +11:7313941 11:36432860 SYT9--PRR5L BS_FW5ECXXK ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr11:28.83Mb]],inversion/3'-3' SYT9 NA PRR5L NA NA NA NA NA NA +5:99743695 9:33700132 AC008837.2(148398)/AC092284.1(204600)--AL356489.2 BS_FWMJPKCV ARRIBA other 3 0 medium [],translocation AC008837.2 AC092284.1 AL356489.2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_FWMJPKCV ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_FWMJPKCV ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_FWMJPKCV ARRIBA other 55 6 high [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +2:139368484 2:139339254 AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_FWMJPKCV ARRIBA other 11 0 high [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA +11:108148858 11:108133820 ACAT1(1082)/NPAT(8357)--ACAT1 BS_FWMJPKCV ARRIBA other 1 0 low [],duplication ACAT1 NPAT ACAT1 NA NA NA NA NA NA +5:90779097 5:90720048 ADGRV1--ADGRV1 BS_FWMJPKCV ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +22:32273507 22:32269357 AL008723.1--SLC5A4-AS1 BS_FWMJPKCV ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]],duplication AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA +22:32273507 22:32265431 AL008723.1--SLC5A4-AS1 BS_FWMJPKCV ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]],duplication AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_FWMJPKCV ARRIBA other 8 2 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_FWMJPKCV ARRIBA frameshift 3 4 medium [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +5:61761022 5:61703866 C5orf64(9259)/AC026434.2(70925)--C5orf64 BS_FWMJPKCV ARRIBA other 4 0 high [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_FWMJPKCV ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_FWMJPKCV ARRIBA in-frame 14 5 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_FWMJPKCV ARRIBA in-frame 7 4 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_FWMJPKCV ARRIBA other 40 3 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_FWMJPKCV ARRIBA other 4 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_FWMJPKCV ARRIBA frameshift 4 0 medium [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +6:132134483 6:132090446 LINC01013--AL021408.1 BS_FWMJPKCV ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA +14:46920012 14:47035304 MDGA2--MDGA2 BS_FWMJPKCV ARRIBA frameshift 21 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +14:100940450 14:100913432 MEG8--MEG8 BS_FWMJPKCV ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_FWMJPKCV ARRIBA in-frame 18 4 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +10:53816239 10:53827548 PCDH15--PCDH15 BS_FWMJPKCV ARRIBA frameshift 17 3 low [SELFIE,INTRACHROMOSOMAL[chr10:1.83Mb]],duplication/non-canonical_splicing PCDH15 NA PCDH15 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_FWMJPKCV ARRIBA in-frame 32 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_FWMJPKCV ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_FWMJPKCV ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_FWMJPKCV ARRIBA other 22 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_FWMJPKCV ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +4:16323036 4:16256257 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_FWMJPKCV ARRIBA other 1 1 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:134713200 2:134869041 TMEM163--CCNT2-AS1 BS_FWMJPKCV ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA +2:89027168 2:88861564 IGKV3-11--AC244205.1 BS_FX2P2WEG STARFUSION other 79 2 NA [INTRACHROMOSOMAL[chr2:0.17Mb]] IGKV3-11 NA AC244205.1 NA NA NA NA NA NA +9:37651094 9:22213769 FRMPD1--AL157937.1 BS_FYRDYBMZ ARRIBA other 71 2 high [INTRACHROMOSOMAL[chr9:15.44Mb]],inversion FRMPD1 NA AL157937.1 NA NA NA NA NA NA +9:37651094 9:22213769 FRMPD1--AL157937.1 BS_FYRDYBMZ STARFUSION other 73 3 NA [INTRACHROMOSOMAL[chr9:15.44Mb]] FRMPD1 NA AL157937.1 NA NA NA NA NA NA +9:37651094 9:22238914 FRMPD1--AL157937.1(24242)/DMRTA1(207927) BS_FYRDYBMZ ARRIBA other 14 0 medium [],inversion FRMPD1 NA AL157937.1 DMRTA1 NA NA NA TranscriptionFactor NA +9:37651094 9:22215287 FRMPD1--AL157937.1(615)/DMRTA1(231554) BS_FYRDYBMZ ARRIBA other 3 0 medium [],inversion FRMPD1 NA AL157937.1 DMRTA1 NA NA NA TranscriptionFactor NA +17:46152904 17:46172232 KANSL1--KANSL1 BS_FYRDYBMZ ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing KANSL1 NA KANSL1 NA NA NA NA NA NA +9:21818202 9:107191776 MTAP--AL445487.1(20628)/RAD23B(91361) BS_FYRDYBMZ ARRIBA frameshift 2 0 medium [],inversion MTAP NA AL445487.1 RAD23B TumorSuppressorGene NA NA TumorSuppressorGene, Oncogene NA +20:48681235 4:82680912 PREX1--SCD5 BS_FYRDYBMZ ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr20--chr4]],translocation PREX1 NA SCD5 NA Oncogene NA NA NA NA +9:107283695 9:22243595 RAD23B--AL157937.1(28923)/DMRTA1(203246) BS_FYRDYBMZ ARRIBA frameshift 2 0 medium [],inversion RAD23B NA AL157937.1 DMRTA1 TumorSuppressorGene, Oncogene NA NA TranscriptionFactor NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_G00FHF3Q ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_G00FHF3Q ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_G00FHF3Q ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_G00FHF3Q ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +14:89870643 14:89932627 EFCAB11--EFCAB11 BS_G00FHF3Q ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_G00FHF3Q ARRIBA other 3 0 medium [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +1:166917792 1:167440767 ILDR2--CD247 BS_G00FHF3Q ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr1:0.46Mb]],duplication ILDR2 NA CD247 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_G00FHF3Q ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +4:160591224 4:160539739 LINC02477(4407)/RPS14P7(227198)--LINC02477 BS_G00FHF3Q ARRIBA other 12 1 medium [],duplication LINC02477 RPS14P7 LINC02477 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_G00FHF3Q ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_G00FHF3Q ARRIBA other 10 2 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +12:125186866 12:103987050 TMEM132B--TDG BS_G00FHF3Q ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA +6:52995864 14:49862666 7SK--RN7SL2 BS_G1Y281HX STARFUSION other 9 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995915 14:49862665 7SK--RN7SL2 BS_G1Y281HX STARFUSION other 5 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995911 14:49862674 7SK--RN7SL2 BS_G1Y281HX STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995909 14:49862666 7SK--RN7SL2 BS_G1Y281HX STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995807 14:49862667 7SK--RN7SL2 BS_G1Y281HX STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +14:49586872 14:20343397 AL139099.5--AL355075.4 BS_G1Y281HX STARFUSION other 6 15 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586872 14:20343397 AL139099.5--RPPH1 BS_G1Y281HX STARFUSION other 6 15 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +2:218403417 2:201138993 CTDSP1--CFLAR BS_G1Y281HX ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr2:17.22Mb]],inversion/3'-3' CTDSP1 NA CFLAR NA NA Oncogene NA NA NA +2:218403417 2:201138993 CTDSP1--IMPDH1P10 BS_G1Y281HX ARRIBA frameshift 2 1 medium [GTEx,CCLE,INTRACHROMOSOMAL[chr2:17.26Mb]],inversion CTDSP1 NA IMPDH1P10 NA NA NA NA NA NA +14:49586872 14:20343397 RN7SL1--AL355075.4 BS_G1Y281HX STARFUSION other 6 15 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586872 14:20343397 RN7SL1--RPPH1 BS_G1Y281HX STARFUSION other 6 15 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +2:144424796 2:143624133 ZEB2--ARHGAP15 BS_G1Y281HX ARRIBA in-frame 1 1 low [GTEx,INTRACHROMOSOMAL[chr2:0.60Mb]],inversion ZEB2 NA ARHGAP15 NA Oncogene, TranscriptionFactor NA NA NA NA +11:34159296 11:91548192 ABTB2--AP002791.1(164903)/AP003028.1(246170) BS_G23JJAZY ARRIBA frameshift 9 0 high [],duplication ABTB2 NA AP002791.1 AP003028.1 Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_G23JJAZY ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_G23JJAZY ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:63764868 11:65662441 C11orf95--RELA BS_G23JJAZY ARRIBA in-frame 89 33 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_G23JJAZY ARRIBA in-frame 95 18 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662088 C11orf95--RELA BS_G23JJAZY ARRIBA in-frame 2 12 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_G23JJAZY ARRIBA in-frame 7 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_G23JJAZY STARFUSION in-frame 103 37 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662441 C11orf95--RELA BS_G23JJAZY STARFUSION other 95 37 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:108178423 11:77851523 NPAT--AP002812.3 BS_G23JJAZY ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr11:30.31Mb]],deletion/5'-5' NPAT NA AP002812.3 NA NA NA NA NA NA +11:67629718 11:65568136 NUDT8--AP001362.1(6529)/SSSCA1-AS1(346) BS_G23JJAZY ARRIBA frameshift 3 0 medium [],inversion NUDT8 NA AP001362.1 SSSCA1-AS1 NA NA NA NA NA +11:67629428 11:65558334 NUDT8--LTBP3 BS_G23JJAZY ARRIBA other 17 0 medium [INTRACHROMOSOMAL[chr11:2.07Mb]],inversion/5'-5' NUDT8 NA LTBP3 NA NA Oncogene NA NA NA +11:67629718 11:65570604 NUDT8--SSSCA1 BS_G23JJAZY ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr11:2.05Mb]],inversion NUDT8 NA SSSCA1 NA NA NA NA NA NA +11:67629718 11:65570886 NUDT8--SSSCA1 BS_G23JJAZY ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr11:2.05Mb]],inversion NUDT8 NA SSSCA1 NA NA NA NA NA NA +13:19751271 13:19835689 PSPC1--ZMYM5 BS_G23JJAZY ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19838985 PSPC1--ZMYM5 BS_G23JJAZY ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_G23JJAZY ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_G23JJAZY ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_G3RJTBZD ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_G3RJTBZD ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:176916624 3:177026474 AC092920.1(48786)/MTND5P15(94095)--TBL1XR1 BS_G3RJTBZD ARRIBA other 3 0 medium [],duplication AC092920.1 MTND5P15 TBL1XR1 NA NA CosmicCensus NA NA NA +6:157200798 4:16637202 ARID1B--LDB2 BS_G3RJTBZD ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr6--chr4]],translocation ARID1B NA LDB2 NA CosmicCensus, Oncogene NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_G3RJTBZD ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_G3RJTBZD ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_G5QBBHDV ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_G5QBBHDV ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_G5QBBHDV ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:19609322 7:19576287 AC007091.1(30716)/TWISTNB(86140)--AC007091.1 BS_G63HYD6N ARRIBA other 3 0 low [],duplication AC007091.1 TWISTNB AC007091.1 NA NA NA NA NA NA +5:7804692 5:7784365 ADCY2--ADCY2 BS_G63HYD6N ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA +6:167962567 6:167914168 AFDN--AFDN BS_G63HYD6N ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.15Mb]],duplication/non-canonical_splicing AFDN NA AFDN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +20:46474501 20:46496952 AL031686.1--AL031686.1(221)/ZNF334(2678) BS_G63HYD6N ARRIBA other 3 2 high [],duplication AL031686.1 NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_G63HYD6N ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46474501 20:46506458 AL031686.1--ZNF334 BS_G63HYD6N ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46496711 20:46504740 AL031686.1--ZNF334 BS_G63HYD6N ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46492682 20:46504740 AL031686.1--ZNF334 BS_G63HYD6N ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46485529 20:46504740 AL031686.1--ZNF334 BS_G63HYD6N ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +11:64036159 11:65711874 AP000721.2--KAT5 BS_G63HYD6N ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr11:1.61Mb]],deletion AP000721.2 NA KAT5 NA NA TumorSuppressorGene, Oncogene NA NA NA +11:64036159 11:65663427 AP000721.2--RELA(333)/RN7SL309P(32125) BS_G63HYD6N ARRIBA other 2 0 medium [],deletion AP000721.2 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA +11:67368534 11:65662351 AP003419.2--RELA BS_G63HYD6N ARRIBA other 10 0 medium [INTRACHROMOSOMAL[chr11:1.69Mb]],deletion AP003419.2 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +8:1894572 8:1876571 ARHGEF10--ARHGEF10 BS_G63HYD6N ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.13Mb]],duplication/non-canonical_splicing ARHGEF10 NA ARHGEF10 NA CosmicCensus CosmicCensus NA NA NA +8:1894572 8:1882635 ARHGEF10--KBTBD11-OT1 BS_G63HYD6N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication ARHGEF10 NA KBTBD11-OT1 NA CosmicCensus NA NA NA NA +8:1894572 8:1876571 ARHGEF10--KBTBD11-OT1 BS_G63HYD6N ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication ARHGEF10 NA KBTBD11-OT1 NA CosmicCensus NA NA NA NA +8:1909470 8:1876571 ARHGEF10--KBTBD11-OT1 BS_G63HYD6N ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication ARHGEF10 NA KBTBD11-OT1 NA CosmicCensus NA NA NA NA +8:1864436 8:1843353 ARHGEF10--KBTBD11-OT1 BS_G63HYD6N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication ARHGEF10 NA KBTBD11-OT1 NA CosmicCensus NA NA NA NA +8:1898525 8:1880048 ARHGEF10--KBTBD11-OT1 BS_G63HYD6N ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication ARHGEF10 NA KBTBD11-OT1 NA CosmicCensus NA NA NA NA +8:1903451 8:1843353 ARHGEF10--KBTBD11-OT1 BS_G63HYD6N ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication ARHGEF10 NA KBTBD11-OT1 NA CosmicCensus NA NA NA NA +3:182913994 3:182885951 ATP11B--ATP11B BS_G63HYD6N ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.13Mb]],duplication/non-canonical_splicing ATP11B NA ATP11B NA NA NA NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_G63HYD6N ARRIBA in-frame 584 190 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_G63HYD6N ARRIBA in-frame 63 1 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_G63HYD6N STARFUSION in-frame 601 229 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +2:119630901 2:119604672 CFAP221--CFAP221 BS_G63HYD6N ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.12Mb]],duplication/non-canonical_splicing CFAP221 NA CFAP221 NA NA NA NA NA NA +15:92974950 15:92955423 CHD2--CHD2 BS_G63HYD6N ARRIBA in-frame 26 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +11:67368534 11:65662351 CLCF1--RELA BS_G63HYD6N ARRIBA other 10 0 medium [INTRACHROMOSOMAL[chr11:1.70Mb]],deletion CLCF1 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +8:61376779 8:61299677 CLVS1--CLVS1 BS_G63HYD6N ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.44Mb]],duplication/non-canonical_splicing CLVS1 NA CLVS1 NA NA NA NA NA NA +9:121168321 9:121158855 CNTRL--CNTRL BS_G63HYD6N ARRIBA frameshift 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.10Mb]],duplication/non-canonical_splicing CNTRL NA CNTRL NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +13:39694725 13:39687503 COG6--COG6 BS_G63HYD6N ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.14Mb]],duplication/non-canonical_splicing COG6 NA COG6 NA NA NA NA NA NA +14:39348977 14:39308449 CTAGE5--CTAGE5 BS_G63HYD6N ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.16Mb]],duplication/non-canonical_splicing CTAGE5 NA CTAGE5 NA NA NA NA NA NA +9:19357154 9:19350702 DENND4C--DENND4C BS_G63HYD6N ARRIBA frameshift 5 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing DENND4C NA DENND4C NA NA NA NA NA NA +2:195886141 2:195907009 DNAH7--DNAH7 BS_G63HYD6N ARRIBA in-frame 12 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA +6:56485312 6:56501693 DST--DST BS_G63HYD6N ARRIBA in-frame 7 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing DST NA DST NA Oncogene Oncogene NA NA NA +22:43576297 22:43608600 EFCAB6--EFCAB6 BS_G63HYD6N ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr22:0.28Mb]],duplication/non-canonical_splicing EFCAB6 NA EFCAB6 NA NA NA NA NA NA +9:14756374 9:14846091 FREM1--FREM1 BS_G63HYD6N ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.18Mb]],duplication/non-canonical_splicing FREM1 NA FREM1 NA NA NA NA NA NA +11:771333 11:56613519 GATD1--OR5M1 BS_G63HYD6N ARRIBA in-frame 11 2 high [INTRACHROMOSOMAL[chr11:55.83Mb]],duplication GATD1 NA OR5M1 NA NA NA NA NA NA +11:770993 11:56613519 GATD1--OR5M1 BS_G63HYD6N ARRIBA frameshift 2 2 high [INTRACHROMOSOMAL[chr11:55.83Mb]],duplication GATD1 NA OR5M1 NA NA NA NA NA NA +11:770314 11:56613519 GATD1--OR5M1 BS_G63HYD6N ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr11:55.83Mb]],duplication GATD1 NA OR5M1 NA NA NA NA NA NA +2:37056440 2:37060733 HEATR5B--HEATR5B BS_G63HYD6N ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.12Mb]],duplication/non-canonical_splicing HEATR5B NA HEATR5B NA NA NA NA NA NA +8:1894572 8:1882635 KBTBD11-OT1--ARHGEF10 BS_G63HYD6N ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA +8:1864436 8:1843353 KBTBD11-OT1--ARHGEF10 BS_G63HYD6N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA +8:1894572 8:1876571 KBTBD11-OT1--ARHGEF10 BS_G63HYD6N ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA +8:1909470 8:1876571 KBTBD11-OT1--ARHGEF10 BS_G63HYD6N ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA +8:1898525 8:1880048 KBTBD11-OT1--ARHGEF10 BS_G63HYD6N ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA +8:1903451 8:1843353 KBTBD11-OT1--ARHGEF10 BS_G63HYD6N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:0.13Mb]],duplication KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA +14:58512627 14:58474607 KIAA0586--KIAA0586 BS_G63HYD6N ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing KIAA0586 NA KIAA0586 NA NA NA NA NA NA +7:86925528 7:86942104 KIAA1324L--KIAA1324L BS_G63HYD6N ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.18Mb]],duplication/non-canonical_splicing KIAA1324L NA KIAA1324L NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_G63HYD6N ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +18:7049078 18:7080457 LAMA1--LAMA1 BS_G63HYD6N ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA +14:60019260 14:59997656 LRRC9--LRRC9 BS_G63HYD6N ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +12:85047470 12:85040490 LRRIQ1--LRRIQ1 BS_G63HYD6N ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.23Mb]],duplication/non-canonical_splicing LRRIQ1 NA LRRIQ1 NA NA NA NA NA NA +14:100958343 14:100913432 MEG8--MEG8 BS_G63HYD6N ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA +20:46474501 20:46496952 MKRN7P--AL031686.1(221)/ZNF334(2678) BS_G63HYD6N ARRIBA other 3 1 high [],duplication MKRN7P NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA +20:46474501 20:46504740 MKRN7P--ZNF334 BS_G63HYD6N ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46474501 20:46506458 MKRN7P--ZNF334 BS_G63HYD6N ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA +11:112961664 11:67367626 NCAM1--CLCF1 BS_G63HYD6N ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr11:45.59Mb]],inversion NCAM1 NA CLCF1 NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_G63HYD6N ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96920125 12:96535515 NEDD1--CFAP54 BS_G63HYD6N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96943762 12:96589427 NEDD1--CFAP54 BS_G63HYD6N ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +9:131164144 9:131144280 NUP214--NUP214 BS_G63HYD6N ARRIBA in-frame 9 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing NUP214 NA NUP214 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +11:67368534 11:65662351 RAD9A--RELA BS_G63HYD6N ARRIBA other 10 0 medium [INTRACHROMOSOMAL[chr11:1.65Mb]],deletion/3'-3' RAD9A NA RELA NA Oncogene Oncogene, TranscriptionFactor NA NA NA +20:38532859 20:38521497 RALGAPB--RALGAPB BS_G63HYD6N ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.11Mb]],duplication/non-canonical_splicing RALGAPB NA RALGAPB NA NA NA NA NA NA +11:65662826 11:64015281 RELA--MACROD1 BS_G63HYD6N ARRIBA in-frame 46 0 medium [INTRACHROMOSOMAL[chr11:1.49Mb]],deletion RELA NA MACROD1 NA Oncogene, TranscriptionFactor Oncogene NA NA NA +11:65662826 11:64015281 RELA--MACROD1 BS_G63HYD6N STARFUSION in-frame 35 0 NA [INTRACHROMOSOMAL[chr11:1.49Mb]] RELA NA MACROD1 NA Oncogene, TranscriptionFactor Oncogene NA NA NA +6:145888020 6:145927277 SHPRH--SHPRH BS_G63HYD6N ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing SHPRH NA SHPRH NA TumorSuppressorGene TumorSuppressorGene NA NA NA +17:72081921 17:72085045 SOX9-AS1--SOX9-AS1 BS_G63HYD6N ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing SOX9-AS1 NA SOX9-AS1 NA NA NA NA NA NA +1:118081101 1:118087008 SPAG17--SPAG17 BS_G63HYD6N ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing SPAG17 NA SPAG17 NA NA NA NA NA NA +9:4600653 9:4629168 SPATA6L--SPATA6L BS_G63HYD6N ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing SPATA6L NA SPATA6L NA NA NA NA NA NA +13:111316257 13:111283139 TEX29--ARHGEF7 BS_G63HYD6N ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr13:0.01Mb],LOCAL_REARRANGEMENT:+:[10447]],duplication TEX29 NA ARHGEF7 NA NA NA NA NA NA +8:93822563 8:93799618 TMEM67(3329)/AC084346.1(11891)--TMEM67 BS_G63HYD6N ARRIBA other 2 0 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +15:61880609 15:61910305 VPS13C--VPS13C BS_G63HYD6N ARRIBA in-frame 11 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.21Mb]],duplication/non-canonical_splicing VPS13C NA VPS13C NA NA NA NA NA NA +3:184863067 3:184824545 VPS8--VPS8 BS_G63HYD6N ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.24Mb]],duplication/non-canonical_splicing VPS8 NA VPS8 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_G7AGNB5G ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_G7AGNB5G ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_G7AGNB5G ARRIBA other 22 0 low [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +8:89436506 8:89725641 KRT8P4(21435)/AF117829.1(172903)--AF117829.1 BS_G7AGNB5G ARRIBA other 3 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +6:118813102 6:118856545 MCM9--MCM9 BS_G7AGNB5G ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +7:153749008 7:149891301 PAXBP1P1(299133)/DPP6(138089)--AC092681.1 BS_G7AGNB5G ARRIBA other 3 0 medium [],inversion PAXBP1P1 DPP6 AC092681.1 NA NA NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_G7AGNB5G ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_G7AGNB5G ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +17:18804266 17:15440285 TVP23B--CDRT4 BS_G7AGNB5G ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_G9XE3N9T ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_G9XE3N9T ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_G9XE3N9T ARRIBA other 13 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_G9XE3N9T ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +18:65844065 18:65809704 CDH7--CDH7 BS_G9XE3N9T ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_G9XE3N9T ARRIBA other 17 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_G9XE3N9T ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +16:405825 12:41222 DECR2--FAM138D(3089)/IQSEC3(25543) BS_G9XE3N9T ARRIBA frameshift 2 0 low [],translocation DECR2 NA FAM138D IQSEC3 NA NA NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_G9XE3N9T ARRIBA frameshift 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_G9XE3N9T ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_G9XE3N9T ARRIBA frameshift 17 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_G9XE3N9T ARRIBA frameshift 20 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_G9XE3N9T ARRIBA frameshift 47 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +2:8201947 2:8245140 LINC00299--LINC00299 BS_G9XE3N9T ARRIBA other 6 0 high [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_G9XE3N9T ARRIBA other 2 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +18:34093465 18:34112697 NOL4--NOL4 BS_G9XE3N9T ARRIBA frameshift 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr18:0.37Mb]],duplication NOL4 NA NOL4 NA NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_G9XE3N9T ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_G9XE3N9T ARRIBA other 8 1 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +5:131489546 5:131521521 RAPGEF6--RAPGEF6 BS_G9XE3N9T ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.21Mb]],duplication/non-canonical_splicing RAPGEF6 NA RAPGEF6 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_G9XE3N9T ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_G9XE3N9T ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_G9XE3N9T ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_G9XE3N9T ARRIBA other 3 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_G9XE3N9T ARRIBA other 8 1 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +X:75417087 X:75431520 ZDHHC15--ZDHHC15 BS_G9XE3N9T ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.16Mb]],duplication/non-canonical_splicing ZDHHC15 NA ZDHHC15 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_GC3CH9TY ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +1:219218712 1:219210532 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_GC3CH9TY ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +2:202321927 2:202290323 NOP58(18261)/RN7SL753P(11512)--NOP58 BS_GC3CH9TY ARRIBA other 1 0 low [],duplication NOP58 RN7SL753P NOP58 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_GC3CH9TY ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GCA4GET3 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GCA4GET3 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_GCA4GET3 ARRIBA other 22 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_GCA4GET3 ARRIBA frameshift 17 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +7:138869538 7:140794467 KIAA1549--BRAF BS_GCA4GET3 ARRIBA in-frame 8 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138869538 7:140794467 KIAA1549--BRAF BS_GCA4GET3 STARFUSION in-frame 9 3 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +8:17341363 8:17373240 MTMR7--MTMR7 BS_GCA4GET3 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA +15:76009200 15:76052983 NRG4--NRG4 BS_GCA4GET3 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GCA4GET3 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_GCA4GET3 ARRIBA other 3 1 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GCQFGDTX ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GCQFGDTX ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:137032794 7:136619956 AC009264.1--AC009541.1(131639)/AC009264.1(65603) BS_GCQFGDTX ARRIBA other 2 1 high [],deletion AC009264.1 NA AC009541.1 AC009264.1 NA NA NA NA NA +2:183236127 2:183157444 AC021851.1(20727)/LIN28AP1(24515)--NUP35 BS_GCQFGDTX ARRIBA other 1 0 low [],duplication AC021851.1 LIN28AP1 NUP35 NA NA NA NA NA NA +15:21262567 15:22360628 AC068446.3(2420)/AC068446.1(31086)--AC100757.2 BS_GCQFGDTX ARRIBA other 1 2 medium [],inversion AC068446.3 AC068446.1 AC100757.2 NA NA NA NA NA NA +4:138281739 4:138337154 AC093903.1--LINC00499 BS_GCQFGDTX ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr4:0.03Mb],LOCAL_INVERSION:-:+:[27927]],duplication/5'-5' AC093903.1 NA LINC00499 NA NA NA NA NA NA +15:22360989 13:35109290 AC100757.2--NBEA BS_GCQFGDTX ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr15--chr13]],translocation AC100757.2 NA NBEA NA NA CosmicCensus NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_GCQFGDTX ARRIBA other 15 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +14:28724268 14:28738844 AL121766.1(50541)/FOXG1-AS1(4815)--FOXG1-AS1 BS_GCQFGDTX ARRIBA other 3 0 low [],duplication AL121766.1 FOXG1-AS1 FOXG1-AS1 NA NA NA NA NA NA +2:201307519 2:201364176 ALS2CR12--ALS2CR12(6778)/TRAK2(13031) BS_GCQFGDTX ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA +22:16669462 22:16679493 ANKRD62P1-PARP4P3--AC005301.1 BS_GCQFGDTX ARRIBA other 4 1 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[476]],duplication ANKRD62P1-PARP4P3 NA AC005301.1 NA NA NA NA NA NA +1:92784836 3:147688977 EVI5--NPM1P28(97142)/AC092925.1(155146) BS_GCQFGDTX ARRIBA other 6 1 high [],translocation EVI5 NA NPM1P28 AC092925.1 NA NA NA NA NA +1:92784836 3:147688977 EVI5--NPM1P28(97142)/AC092925.1(155146) BS_GCQFGDTX ARRIBA other 2 1 high [],translocation EVI5 NA NPM1P28 AC092925.1 NA NA NA NA NA +1:92784836 3:147507941 EVI5--ZIC1 BS_GCQFGDTX ARRIBA other 19 2 high [INTERCHROMOSOMAL[chr1--chr3]],translocation EVI5 NA ZIC1 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +1:92784836 3:147507941 EVI5--ZIC1 BS_GCQFGDTX STARFUSION other 19 3 NA [INTERCHROMOSOMAL[chr1--chr3]] EVI5 NA ZIC1 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +6:65490594 6:65495993 EYS--EYS BS_GCQFGDTX ARRIBA frameshift 57 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_GCQFGDTX ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_GCQFGDTX ARRIBA other 4 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +17:69933849 17:69827945 LINC01483(30849)/LINC01497(27858)--LINC01483 BS_GCQFGDTX ARRIBA other 1 2 medium [],duplication LINC01483 LINC01497 LINC01483 NA NA NA NA NA NA +2:77518318 2:77522069 LRRTM4--LRRTM4 BS_GCQFGDTX ARRIBA frameshift 7 1 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.85Mb]],duplication LRRTM4 NA LRRTM4 NA NA NA NA NA NA +15:20669468 15:20065748 NBEAP1--AC127381.2(17754)/BCAR1P1(7951) BS_GCQFGDTX ARRIBA other 3 0 medium [],deletion NBEAP1 NA AC127381.2 BCAR1P1 Oncogene NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_GCQFGDTX ARRIBA other 15 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GCQFGDTX ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:103656194 4:103658403 TACR3--TACR3 BS_GCQFGDTX ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA +3:147421559 1:92736627 ZIC1--EVI5 BS_GCQFGDTX ARRIBA other 13 3 high [INTERCHROMOSOMAL[chr3--chr1]],translocation ZIC1 NA EVI5 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_GDHH6T5A ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GE2RVZE6 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GE2RVZE6 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_GE2RVZE6 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_GE2RVZE6 ARRIBA other 4 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +8:102978955 8:102904224 AP003354.2--AZIN1-AS1 BS_GE2RVZE6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.00Mb],LOCAL_REARRANGEMENT:+:[909]],duplication AP003354.2 NA AZIN1-AS1 NA NA NA NA NA NA +17:61776401 17:61799299 BRIP1--BRIP1 BS_GE2RVZE6 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.18Mb]],duplication/non-canonical_splicing BRIP1 NA BRIP1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +1:166917792 1:167440767 ILDR2--CD247 BS_GE2RVZE6 ARRIBA other 5 2 high [INTRACHROMOSOMAL[chr1:0.46Mb]],duplication ILDR2 NA CD247 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_GE2RVZE6 ARRIBA frameshift 15 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_GE2RVZE6 ARRIBA frameshift 4 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +15:88252198 20:1377816 NTRK3--SDCBP2-AS1 BS_GE2RVZE6 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr15--chr20]],translocation NTRK3 NA SDCBP2-AS1 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GE2RVZE6 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_GE2RVZE6 ARRIBA other 6 3 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +12:125186866 12:103987050 TMEM132B--TDG BS_GE2RVZE6 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA +4:95548734 4:157221667 UNC5C--GRIA2 BS_GE2RVZE6 ARRIBA in-frame 33 8 high [INTRACHROMOSOMAL[chr4:61.65Mb]],inversion UNC5C NA GRIA2 NA TumorSuppressorGene NA NA NA NA +4:95548734 4:157303552 UNC5C--GRIA2 BS_GE2RVZE6 ARRIBA in-frame 1 2 high [INTRACHROMOSOMAL[chr4:61.65Mb]],inversion UNC5C NA GRIA2 NA TumorSuppressorGene NA NA NA NA +4:95548734 4:157221667 UNC5C--GRIA2 BS_GE2RVZE6 STARFUSION in-frame 34 8 NA [INTRACHROMOSOMAL[chr4:61.65Mb]] UNC5C NA GRIA2 NA TumorSuppressorGene NA NA NA NA +16:4113750 X:15782485 ADCY9--CA5B BS_GFM6EA61 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr16--chrX]],translocation ADCY9 NA CA5B NA NA NA NA NA NA +9:128886121 9:123792630 LRRC8A--DENND1A BS_GFM6EA61 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr9:4.95Mb]],inversion LRRC8A NA DENND1A NA NA NA NA NA NA +9:124733308 9:123820381 NR6A1--DENND1A BS_GFM6EA61 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr9:0.59Mb]],inversion/5'-5' NR6A1 NA DENND1A NA TranscriptionFactor NA NA NA NA +19:2841575 19:2832303 ZNF555--ZNF554 BS_GFM6EA61 ARRIBA frameshift 2 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.01Mb],LOCAL_REARRANGEMENT:+:[5662]],duplication ZNF555 NA ZNF554 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GG9W3J9Y ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GG9W3J9Y ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:60726410 1:60733522 AC099792.1--AC099792.1 BS_GG9W3J9Y ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing AC099792.1 NA AC099792.1 NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_GG9W3J9Y STARFUSION other 14 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_GG9W3J9Y ARRIBA other 2 1 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +9:86632268 9:86589809 AL353613.1--RNU2-36P(166681)/AL353613.1(42338) BS_GG9W3J9Y ARRIBA other 18 0 high [],duplication AL353613.1 NA RNU2-36P AL353613.1 NA NA NA NA NA +1:57062884 1:57072414 DAB1--DAB1 BS_GG9W3J9Y ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:1.55Mb]],duplication/non-canonical_splicing DAB1 NA DAB1 NA NA NA NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_GG9W3J9Y ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_GG9W3J9Y ARRIBA frameshift 15 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +15:88126271 15:88137561 NTRK3--NTRK3 BS_GG9W3J9Y ARRIBA frameshift 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.40Mb]],duplication/non-canonical_splicing NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GG9W3J9Y ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:66690316 1:66677004 SGIP1--SGIP1 BS_GG9W3J9Y ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SGIP1 NA SGIP1 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_GG9W3J9Y ARRIBA other 3 1 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GHNJ4CYC ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GHNJ4CYC ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_GHNJ4CYC ARRIBA other 7 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_GHNJ4CYC ARRIBA in-frame 7 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_GHNJ4CYC ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GJNCYABP ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GJNCYABP ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +6:35347150 6:35286128 PPARD--ZNF76 BS_GJNCYABP ARRIBA in-frame 4 0 high [INTRACHROMOSOMAL[chr6:0.05Mb],LOCAL_REARRANGEMENT:+:[46573]],duplication PPARD NA ZNF76 NA Oncogene, TranscriptionFactor TranscriptionFactor NA NA NA +12:15569498 12:14052166 PTPRO--GRIN2B(70209)/AC092470.1(117580) BS_GJNCYABP ARRIBA frameshift 2 0 medium [],inversion PTPRO NA GRIN2B AC092470.1 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GJNCYABP ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:7804692 5:7784365 ADCY2--ADCY2 BS_GM9Y3AZ5 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GMDQK06Q ARRIBA other 69 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GMDQK06Q ARRIBA other 69 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_GMDQK06Q ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +2:195906659 2:195926566 DNAH7--DNAH7 BS_GMDQK06Q ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA +12:13753317 12:13753915 GRIN2B--GRIN2B BS_GMDQK06Q ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.54Mb]],duplication/non-canonical_splicing GRIN2B NA GRIN2B NA NA NA NA NA NA +14:60008214 14:59981848 LRRC9--LRRC9 BS_GMDQK06Q ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_GMDQK06Q ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_GMDQK06Q ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_GMDQK06Q ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GMDQK06Q ARRIBA other 69 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:55858190 7:56011222 SEPT14--PSPH BS_GMDQK06Q ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr7:0.15Mb]],inversion/3'-3' SEPT14 NA PSPH NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GMJBGBWB ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GMJBGBWB ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GMJBGBWB ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GNV89A5P ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GNV89A5P ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_GNV89A5P ARRIBA other 3 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_GNV89A5P ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_GNV89A5P ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_GNV89A5P ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100561397 CAVIN4--TMEFF1 BS_GNV89A5P ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +6:65490594 6:65495993 EYS--EYS BS_GNV89A5P ARRIBA frameshift 18 2 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +17:46152904 17:46237324 KANSL1--KANSL1(11935)/MAPK8IP1P1(6282) BS_GNV89A5P ARRIBA other 1 0 low [],inversion KANSL1 NA KANSL1 MAPK8IP1P1 NA NA NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_GNV89A5P ARRIBA frameshift 23 6 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +17:46248159 17:46152966 MAPK8IP1P1(3115)/AC005829.2(11392)--KANSL1 BS_GNV89A5P ARRIBA other 1 0 low [],inversion MAPK8IP1P1 AC005829.2 KANSL1 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_GNV89A5P ARRIBA frameshift 12 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GNV89A5P ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161624566 2:161620915 SLC4A10--SLC4A10 BS_GNV89A5P ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +17:21000942 14:49862817 USP22--RN7SL2 BS_GNV89A5P STARFUSION other 16 0 NA [FA_CancerSupp,INTERCHROMOSOMAL[chr17--chr14]] USP22 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GPEGRCCT ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GPEGRCCT ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:160039605 10:100276343 KCNJ10--BLOC1S2 BS_GPEGRCCT ARRIBA other 6 1 medium [INTERCHROMOSOMAL[chr1--chr10]],translocation/5'-5' KCNJ10 NA BLOC1S2 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_GPEGRCCT ARRIBA other 4 1 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GPEGRCCT ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GR46VD0Q ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GR46VD0Q ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:26189330 11:26309645 AC099687.1--ANO3 BS_GR46VD0Q STARFUSION other 29 4 NA [INTRACHROMOSOMAL[chr11:0.10Mb]] AC099687.1 NA ANO3 NA NA NA NA NA NA +15:93634194 15:93557472 AC110023.1--AC091078.1 BS_GR46VD0Q ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_GR46VD0Q ARRIBA other 3 0 low [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +15:21617244 15:21595606 LINC02203--LINC02203 BS_GR46VD0Q ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.10Mb]],duplication/non-canonical_splicing LINC02203 NA LINC02203 NA NA NA NA NA NA +15:21679693 15:21595606 LINC02203(26417)/AC135068.4(3345)--LINC02203 BS_GR46VD0Q ARRIBA other 3 0 medium [],duplication LINC02203 AC135068.4 LINC02203 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GR46VD0Q ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_GR46VD0Q ARRIBA other 2 0 medium [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +14:72594327 14:72619984 AC004828.1--DPF3 BS_GS1KR5PK ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GS1KR5PK ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GS1KR5PK ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_GS1KR5PK ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_GS1KR5PK ARRIBA other 57 10 high [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +7:137463489 7:137469619 DGKI--DGKI BS_GS1KR5PK ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_GS1KR5PK ARRIBA frameshift 10 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_GS1KR5PK ARRIBA frameshift 13 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_GS1KR5PK ARRIBA frameshift 20 1 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_GS1KR5PK ARRIBA frameshift 16 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_GS1KR5PK ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_GS1KR5PK ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +12:27762965 12:27714780 MANSC4--MRPS35 BS_GS1KR5PK ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_INVERSION:-:+:[6443]],duplication/3'-3' MANSC4 NA MRPS35 NA NA NA NA NA NA +15:76009200 15:76052983 NRG4--NRG4 BS_GS1KR5PK ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +1:101825026 1:101837025 OLFM3--OLFM3 BS_GS1KR5PK ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.19Mb]],duplication/non-canonical_splicing OLFM3 NA OLFM3 NA NA NA NA NA NA +12:70656704 12:70662605 PTPRR--PTPRR BS_GS1KR5PK ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GS1KR5PK ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:75164740 2:74966749 SAMD8--POLE4 BS_GS1KR5PK ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr10--chr2]],translocation/5'-5' SAMD8 NA POLE4 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_GS1KR5PK ARRIBA other 14 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GSVCN2XC ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GSVCN2XC ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:232697392 2:220853682 GIGYF2--AC093843.1(55789)/AC011233.1(309089) BS_GSVCN2XC ARRIBA other 8 0 medium [],inversion GIGYF2 NA AC093843.1 AC011233.1 NA NA NA NA NA +3:195214895 9:35658016 RNU6-25P--RMRP BS_GSVCN2XC ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr3--chr9]],translocation RNU6-25P NA RMRP NA NA Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GSVCN2XC ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GTZCFGRZ ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GTZCFGRZ ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:69599962 1:226648771 AUTS2--ITPKB BS_GTZCFGRZ ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr7--chr1]],translocation AUTS2 NA ITPKB NA NA NA NA NA NA +1:240123345 1:239827252 FMN2--CHRM3 BS_GTZCFGRZ ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr1:0.10Mb],LOCAL_REARRANGEMENT:+:[98896]],duplication FMN2 NA CHRM3 NA NA NA NA NA NA +1:240123345 1:239907433 FMN2--CHRM3 BS_GTZCFGRZ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.10Mb],LOCAL_REARRANGEMENT:+:[98896]],duplication FMN2 NA CHRM3 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GTZCFGRZ ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GV3NZ9QD ARRIBA other 59 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GV3NZ9QD ARRIBA other 59 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:125438297 7:125347125 AC073486.1--AC010099.4 BS_GV3NZ9QD ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr7:0.05Mb],LOCAL_REARRANGEMENT:+:[52026]],duplication AC073486.1 NA AC010099.4 NA NA NA NA NA NA +7:125461650 7:125347125 AC073486.1--AC010099.4 BS_GV3NZ9QD ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.05Mb],LOCAL_REARRANGEMENT:+:[52026]],duplication AC073486.1 NA AC010099.4 NA NA NA NA NA NA +7:125438297 7:125329682 AC073486.1--AC010099.4 BS_GV3NZ9QD ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.05Mb],LOCAL_REARRANGEMENT:+:[52026]],duplication AC073486.1 NA AC010099.4 NA NA NA NA NA NA +7:125438297 7:125401344 AC073486.1--AC010099.4(22023)/AC073486.1(30003) BS_GV3NZ9QD ARRIBA other 2 0 low [],duplication AC073486.1 NA AC010099.4 AC073486.1 NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_GV3NZ9QD ARRIBA other 7 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_GV3NZ9QD ARRIBA other 9 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +1:149607554 1:143974544 LINC00869--FAM72C(2579)/SRGAP2D(543) BS_GV3NZ9QD ARRIBA other 2 0 medium [],duplication LINC00869 NA FAM72C SRGAP2D NA NA NA NA NA +6:132134483 6:132090446 LINC01013--AL021408.1 BS_GV3NZ9QD ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA +6:132134483 6:132098931 LINC01013--AL021408.1 BS_GV3NZ9QD ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_GV3NZ9QD ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +13:19751271 13:19835689 PSPC1--ZMYM5 BS_GV3NZ9QD ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_GV3NZ9QD ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +20:19889658 20:19799622 RIN2--AL121761.1 BS_GV3NZ9QD ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr20:0.08Mb],LOCAL_REARRANGEMENT:+:[76846]],duplication RIN2 NA AL121761.1 NA NA NA NA NA NA +8:89331998 8:89725641 RPSAP74(88205)/KRT8P4(80623)--AF117829.1 BS_GV3NZ9QD ARRIBA other 2 1 high [],duplication RPSAP74 KRT8P4 AF117829.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GV3NZ9QD ARRIBA other 59 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16256257 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_GV3NZ9QD ARRIBA other 2 1 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GW0GKWMS ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GW0GKWMS ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_GW0GKWMS ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_GW0GKWMS ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +4:36107565 4:30903372 ARAP2--PCDH7 BS_GW0GKWMS ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr4:4.80Mb]],deletion/5'-5' ARAP2 NA PCDH7 NA Oncogene NA NA NA NA +6:31540322 6:40433131 ATP6V1G2-DDX39B--LRFN2 BS_GW0GKWMS ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr6:8.84Mb]],duplication ATP6V1G2-DDX39B NA LRFN2 NA NA NA NA NA NA +18:28147673 18:66960895 CDH2--RNU6-1037P(14673)/MIR5011(120689) BS_GW0GKWMS ARRIBA frameshift 4 0 high [],inversion CDH2 NA RNU6-1037P MIR5011 NA NA NA NA NA +6:31540322 6:40433131 DDX39B--LRFN2 BS_GW0GKWMS ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr6:8.85Mb]],duplication DDX39B NA LRFN2 NA NA NA NA NA NA +4:83306203 12:28583751 HPSE--CCDC91(2240)/AC022081.1(238224) BS_GW0GKWMS ARRIBA frameshift 2 0 medium [],translocation HPSE NA CCDC91 AC022081.1 Oncogene NA NA NA NA +3:8501980 3:8963593 LMCD1--RAD18 BS_GW0GKWMS ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr3:0.20Mb]],inversion LMCD1 NA RAD18 NA NA NA NA NA NA +1:230425598 1:203165261 PGBD5--ADORA1 BS_GW0GKWMS ARRIBA frameshift 24 5 high [INTRACHROMOSOMAL[chr1:27.15Mb]],inversion PGBD5 NA ADORA1 NA NA NA NA NA NA +1:230425598 1:203165261 PGBD5--ADORA1 BS_GW0GKWMS STARFUSION frameshift 24 6 NA [INTRACHROMOSOMAL[chr1:27.15Mb]] PGBD5 NA ADORA1 NA NA NA NA NA NA +7:121972692 4:36107693 PTPRZ1--ARAP2 BS_GW0GKWMS ARRIBA frameshift 3 1 medium [INTERCHROMOSOMAL[chr7--chr4]],translocation PTPRZ1 NA ARAP2 NA NA Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GW0GKWMS ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GWCRMKE6 ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GWCRMKE6 ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_GWCRMKE6 ARRIBA other 4 0 low [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +5:160783841 5:160785803 ATP10B--ATP10B BS_GWCRMKE6 ARRIBA other 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr5:0.29Mb]],duplication ATP10B NA ATP10B NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_GWCRMKE6 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +3:178801793 3:178921876 KCNMB2-AS1--KCNMB2-AS1(61471)/ZMAT3(95347) BS_GWCRMKE6 ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GWCRMKE6 ARRIBA other 47 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_GWCRMKE6 ARRIBA other 3 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +22:41469182 22:40594735 ACO2--MKL1 BS_GXTFW99H ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion ACO2 NA MKL1 NA NA Oncogene NA NA NA +14:49586762 14:20343396 AL139099.5--RPPH1 BS_GXTFW99H STARFUSION other 5 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +22:17655832 22:22195970 BCL2L13--IGL-@ BS_GXTFW99H STARFUSION other 36 2 NA [INTRACHROMOSOMAL[chr22:4.30Mb]] BCL2L13 NA IGL-@ NA NA Oncogene NA NA NA +22:17655832 22:22195970 BCL2L13--IGL@ BS_GXTFW99H STARFUSION other 36 2 NA [INTRACHROMOSOMAL[chr22:4.30Mb]] BCL2L13 NA IGL@ NA NA Oncogene NA NA NA +22:17655832 22:22195970 BCL2L13--IGLV6-57 BS_GXTFW99H ARRIBA in-frame 35 1 high [INTRACHROMOSOMAL[chr22:4.46Mb]],deletion BCL2L13 NA IGLV6-57 NA NA NA NA NA NA +22:17638886 22:22195970 BCL2L13--IGLV6-57 BS_GXTFW99H ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr22:4.46Mb]],deletion BCL2L13 NA IGLV6-57 NA NA NA NA NA NA +22:17655832 22:22195970 BCL2L13--IGLV6-57 BS_GXTFW99H STARFUSION in-frame 36 2 NA [INTRACHROMOSOMAL[chr22:4.46Mb]] BCL2L13 NA IGLV6-57 NA NA NA NA NA NA +22:29145346 22:46357430 KREMEN1--TRMU(90)/CELSR1(3404) BS_GXTFW99H ARRIBA other 3 0 medium [],deletion KREMEN1 NA TRMU CELSR1 NA NA NA NA NA +22:33919995 22:38380990 LARGE1--Z98749.2 BS_GXTFW99H ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr22:4.41Mb]],duplication LARGE1 NA Z98749.2 NA NA NA NA NA NA +22:33919995 22:38380990 LARGE1--Z98749.3 BS_GXTFW99H ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:4.37Mb]],duplication LARGE1 NA Z98749.3 NA NA NA NA NA NA +22:40463221 22:41499726 MKL1--ACO2 BS_GXTFW99H ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion MKL1 NA ACO2 NA Oncogene NA NA NA NA +22:40463221 22:41507791 MKL1--ACO2 BS_GXTFW99H ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr22:0.83Mb]],inversion MKL1 NA ACO2 NA Oncogene NA NA NA NA +22:36335506 22:50083173 MYH9--MLC1 BS_GXTFW99H ARRIBA other 13 0 high [INTRACHROMOSOMAL[chr22:13.67Mb]],inversion/3'-3' MYH9 NA MLC1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +6:144008090 6:143712016 PLAGL1--PHACTR2 BS_GXTFW99H ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr6:0.11Mb]],inversion PLAGL1 NA PHACTR2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA +14:49586763 14:20343396 RN7SL1--AL355075.4 BS_GXTFW99H STARFUSION other 5 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +9:35707072 11:75566316 TLN1--SERPINH1 BS_GXTFW99H ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr9--chr11]],translocation TLN1 NA SERPINH1 NA NA NA NA NA NA +22:46357155 22:23136749 TRMU--RSPH14 BS_GXTFW99H ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr22:23.19Mb]],duplication/5'-5' TRMU NA RSPH14 NA NA NA NA NA NA +22:43812833 22:37650152 Z97055.2--SH3BP1 BS_GXTFW99H ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr22:6.15Mb]],duplication Z97055.2 NA SH3BP1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GYA4V1RD ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GYA4V1RD ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:139368484 2:139339254 AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_GYA4V1RD ARRIBA other 3 0 low [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA +7:128533730 7:129880971 AC090114.3--UBE2H BS_GYA4V1RD ARRIBA other 11 0 high [INTRACHROMOSOMAL[chr7:1.21Mb]],inversion AC090114.3 NA UBE2H NA NA NA NA NA NA +7:128533730 7:129879642 AC090114.3--UBE2H BS_GYA4V1RD ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:1.21Mb]],inversion AC090114.3 NA UBE2H NA NA NA NA NA NA +1:171247581 1:170807604 AL445673.1--PRRX1(68185)/MROH9(127867) BS_GYA4V1RD ARRIBA other 1 3 medium [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_GYA4V1RD ARRIBA other 11 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +19:46922356 19:46872444 ARHGAP35--AP2S1(21452)/ARHGAP35(46232) BS_GYA4V1RD ARRIBA frameshift 1 0 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +7:140924566 7:139717015 BRAF--HIPK2 BS_GYA4V1RD ARRIBA frameshift 13 4 medium [INTRACHROMOSOMAL[chr7:0.94Mb]],deletion BRAF NA HIPK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA +7:140924566 7:139717015 BRAF--HIPK2 BS_GYA4V1RD STARFUSION frameshift 13 5 NA [INTRACHROMOSOMAL[chr7:0.94Mb]] BRAF NA HIPK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_GYA4V1RD ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +7:132885662 7:123070115 CHCHD3--AC073311.1 BS_GYA4V1RD ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:9.68Mb]],deletion CHCHD3 NA AC073311.1 NA TranscriptionFactor NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_GYA4V1RD ARRIBA other 14 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_GYA4V1RD ARRIBA in-frame 9 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137687743 7:143330772 DGKI--CLCN1 BS_GYA4V1RD ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr7:5.47Mb]],inversion DGKI NA CLCN1 NA NA NA NA NA NA +7:137846462 7:143330772 DGKI--CLCN1 BS_GYA4V1RD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:5.47Mb]],inversion DGKI NA CLCN1 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_GYA4V1RD ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_GYA4V1RD ARRIBA frameshift 18 3 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_GYA4V1RD ARRIBA frameshift 18 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_GYA4V1RD ARRIBA frameshift 22 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_GYA4V1RD ARRIBA frameshift 3 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +9:136434037 9:136457584 INPP5E--SEC16A BS_GYA4V1RD ARRIBA frameshift 8 0 high [ChimerSeq,INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:-:[273]],duplication INPP5E NA SEC16A NA NA NA NA NA TCGAFusion +7:138861139 7:140787584 KIAA1549--BRAF BS_GYA4V1RD ARRIBA in-frame 7 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +13:69940040 13:69975802 KLHL1--KLHL1 BS_GYA4V1RD ARRIBA frameshift 5 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +7:131107720 7:129880971 LINC-PINT--UBE2H BS_GYA4V1RD ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr7:0.99Mb]],deletion LINC-PINT NA UBE2H NA TumorSuppressorGene NA NA NA NA +7:131107720 7:129879642 LINC-PINT--UBE2H BS_GYA4V1RD ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.99Mb]],deletion LINC-PINT NA UBE2H NA TumorSuppressorGene NA NA NA NA +2:8201947 2:8245140 LINC00299--LINC00299 BS_GYA4V1RD ARRIBA other 4 2 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA +14:38835231 14:38168399 LINC00639--AL392023.2 BS_GYA4V1RD ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr14:0.56Mb]],deletion LINC00639 NA AL392023.2 NA NA NA NA NA NA +1:149607554 1:143974544 LINC00869--FAM72C(2579)/SRGAP2D(543) BS_GYA4V1RD ARRIBA other 2 0 medium [],duplication LINC00869 NA FAM72C SRGAP2D NA NA NA NA NA +7:152464212 7:119358036 LINC01003--AC079791.1(178887)/LINC02476(346520) BS_GYA4V1RD ARRIBA other 2 2 medium [],deletion LINC01003 NA AC079791.1 LINC02476 NA NA NA NA NA +11:25055087 11:25061990 LUZP2--LUZP2 BS_GYA4V1RD ARRIBA frameshift 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr11:0.59Mb]],inversion/3'-3' LUZP2 NA LUZP2 NA NA NA NA NA NA +7:108312665 7:137599905 NRCAM--DGKI BS_GYA4V1RD ARRIBA other 13 2 medium [INTRACHROMOSOMAL[chr7:28.92Mb]],duplication NRCAM NA DGKI NA TumorSuppressorGene, Oncogene NA NA NA NA +7:108248383 7:137608998 NRCAM--DGKI BS_GYA4V1RD ARRIBA other 13 2 medium [INTRACHROMOSOMAL[chr7:28.92Mb]],duplication NRCAM NA DGKI NA TumorSuppressorGene, Oncogene NA NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_GYA4V1RD ARRIBA other 5 1 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +12:70656704 12:70662605 PTPRR--PTPRR BS_GYA4V1RD ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +3:77098340 3:77098014 ROBO2--ROBO2 BS_GYA4V1RD ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_GYA4V1RD ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:140382438 7:139453092 SLC37A3--KLRG2 BS_GYA4V1RD ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:0.81Mb]],inversion/5'-5' SLC37A3 NA KLRG2 NA NA NA NA NA NA +7:127721400 7:137254974 SND1--PTN BS_GYA4V1RD ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:9.13Mb]],inversion SND1 NA PTN NA CosmicCensus Oncogene NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_GYA4V1RD ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_GYA4V1RD ARRIBA other 5 2 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_GYXSDZ56 ARRIBA other 57 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_GYXSDZ56 ARRIBA other 57 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +18:61507560 18:61500383 CDH20--CDH20 BS_GYXSDZ56 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.22Mb]],duplication/non-canonical_splicing CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_GYXSDZ56 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +4:172931500 4:173054927 GALNTL6--GALNTL6(13368)/AC105285.1(77001) BS_GYXSDZ56 ARRIBA other 1 1 medium [],duplication GALNTL6 NA GALNTL6 AC105285.1 NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_GYXSDZ56 ARRIBA other 5 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_GYXSDZ56 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +3:178859489 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_GYXSDZ56 ARRIBA other 2 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_GYXSDZ56 ARRIBA other 4 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_GYXSDZ56 ARRIBA in-frame 6 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_GYXSDZ56 ARRIBA other 57 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_H0QWRJE2 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_H0QWRJE2 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:19893347 2:227912256 AC015726.2(24658)/AC015726.1(3243)--DAW1 BS_H0QWRJE2 ARRIBA other 4 0 medium [],translocation AC015726.2 AC015726.1 DAW1 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_H0QWRJE2 ARRIBA other 3 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_H0QWRJE2 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +14:20343089 14:49862666 AL355075.4--RN7SL2 BS_H0QWRJE2 STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] AL355075.4 NA RN7SL2 NA NA NA NA NA NA +15:100905687 15:101666749 ALDH1A3--TARSL2 BS_H0QWRJE2 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr15:0.74Mb]],deletion/5'-5' ALDH1A3 NA TARSL2 NA NA NA NA NA NA +15:100629732 8:56477901 ASB7--SEPT10P1 BS_H0QWRJE2 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr15--chr8]],translocation ASB7 NA SEPT10P1 NA NA NA NA NA NA +2:227912469 15:64516838 DAW1--ZNF609 BS_H0QWRJE2 ARRIBA frameshift 24 0 high [INTERCHROMOSOMAL[chr2--chr15]],translocation DAW1 NA ZNF609 NA NA TranscriptionFactor NA NA NA +3:57357176 3:57363786 DNAH12--DNAH12 BS_H0QWRJE2 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +1:15397449 1:15380701 FHAD1--FHAD1 BS_H0QWRJE2 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA +13:101345300 13:101378652 NALCN--NALCN BS_H0QWRJE2 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.36Mb]],duplication/non-canonical_splicing NALCN NA NALCN NA NA NA NA NA NA +12:106750793 12:106686884 RFX4--RFX4 BS_H0QWRJE2 ARRIBA frameshift 26 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +2:226914351 2:225729230 RHBDD1--AC016717.2(25576)/AC016717.3(32329) BS_H0QWRJE2 ARRIBA frameshift 3 0 medium [],duplication RHBDD1 NA AC016717.2 AC016717.3 NA NA NA NA NA +2:226914351 5:26627764 RHBDD1--AC025475.1(227945)/AC113347.1(41582) BS_H0QWRJE2 ARRIBA frameshift 3 0 high [],translocation RHBDD1 NA AC025475.1 AC113347.1 NA NA NA NA NA +14:20343090 14:49862667 RPPH1--RN7SL2 BS_H0QWRJE2 STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RPPH1 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_H0QWRJE2 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +15:101711880 4:6287093 TARSL2--WFS1 BS_H0QWRJE2 ARRIBA in-frame 161 10 high [INTERCHROMOSOMAL[chr15--chr4]],translocation TARSL2 NA WFS1 NA NA NA NA NA NA +15:101721126 4:6287093 TARSL2--WFS1 BS_H0QWRJE2 ARRIBA frameshift 1 2 medium [INTERCHROMOSOMAL[chr15--chr4]],translocation TARSL2 NA WFS1 NA NA NA NA NA NA +15:101711880 4:6287093 TARSL2--WFS1 BS_H0QWRJE2 STARFUSION frameshift 165 10 NA [INTERCHROMOSOMAL[chr15--chr4]] TARSL2 NA WFS1 NA NA NA NA NA NA +15:101710818 15:64562145 TARSL2--ZNF609 BS_H0QWRJE2 ARRIBA other 35 5 medium [INTRACHROMOSOMAL[chr15:36.97Mb]],inversion TARSL2 NA ZNF609 NA NA TranscriptionFactor NA NA NA +16:18996579 2:227911826 TMC7--DAW1 BS_H0QWRJE2 ARRIBA other 14 2 medium [INTERCHROMOSOMAL[chr16--chr2]],translocation/3'-3' TMC7 NA DAW1 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_H0QWRJE2 ARRIBA frameshift 5 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +4:6270014 8:56171189 WFS1--PLAG1 BS_H0QWRJE2 ARRIBA other 153 10 high [INTERCHROMOSOMAL[chr4--chr8]],translocation WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +4:6270014 8:56179513 WFS1--PLAG1 BS_H0QWRJE2 ARRIBA other 51 13 high [INTERCHROMOSOMAL[chr4--chr8]],translocation WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +4:6270014 8:56171189 WFS1--PLAG1 BS_H0QWRJE2 STARFUSION other 158 13 NA [INTERCHROMOSOMAL[chr4--chr8]] WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +4:6270014 8:56179513 WFS1--PLAG1 BS_H0QWRJE2 STARFUSION other 52 13 NA [INTERCHROMOSOMAL[chr4--chr8]] WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +4:6289131 15:101714963 WFS1--TARSL2 BS_H0QWRJE2 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr4--chr15]],translocation WFS1 NA TARSL2 NA NA NA NA NA NA +6:13411599 16:399681 GFOD1--NME4 BS_H1XPVS9A ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr6--chr16]],translocation GFOD1 NA NME4 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_H1XPVS9A ARRIBA other 4 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +12:89451641 12:89424706 POC1B--POC1B BS_H1XPVS9A ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.11Mb]],duplication POC1B NA POC1B NA NA NA NA NA NA +4:16323036 4:16288884 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_H1XPVS9A ARRIBA other 2 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_H1ZS5FMZ ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_H1ZS5FMZ ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:22420886 1:96806419 ADGRA3--PTBP2 BS_H1ZS5FMZ ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr4--chr1]],translocation ADGRA3 NA PTBP2 NA NA NA NA NA NA +12:57729639 12:60205826 AGAP2--AC080011.1(109755)/AC087883.1(10168) BS_H1ZS5FMZ ARRIBA frameshift 215 28 high [],duplication AGAP2 NA AC080011.1 AC087883.1 Oncogene NA NA NA NA +14:27077300 14:26480143 AL110292.1--NOVA1 BS_H1ZS5FMZ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.24Mb]],inversion AL110292.1 NA NOVA1 NA NA NA NA NA NA +9:15920422 9:14024166 CCDC171--PES1P2(36257)/AL360089.1(1805) BS_H1ZS5FMZ ARRIBA frameshift 3 1 high [],duplication CCDC171 NA PES1P2 AL360089.1 NA NA NA NA NA +18:48670744 18:68240142 CTIF--AC068112.1(125765)/LINC01912(18197) BS_H1ZS5FMZ ARRIBA frameshift 4 0 medium [],inversion CTIF NA AC068112.1 LINC01912 Oncogene NA NA NA NA +1:51361171 X:31348634 EPS15--DMD BS_H1ZS5FMZ ARRIBA in-frame 3 0 high [INTERCHROMOSOMAL[chr1--chrX]],translocation EPS15 NA DMD NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA +6:160090033 4:23043581 IGF2R--AC097512.1 BS_H1ZS5FMZ ARRIBA frameshift 14 0 medium [INTERCHROMOSOMAL[chr6--chr4]],translocation/5'-5' IGF2R NA AC097512.1 NA TumorSuppressorGene, Oncogene NA NA NA NA +6:160090049 4:23073568 IGF2R--AC097512.1(16706)/AC114912.1(31934) BS_H1ZS5FMZ ARRIBA frameshift 4 0 medium [],translocation IGF2R NA AC097512.1 AC114912.1 TumorSuppressorGene, Oncogene NA NA NA NA +4:53557874 4:29065852 LNX1--AC068944.1(17087)/AC109349.1(52456) BS_H1ZS5FMZ ARRIBA frameshift 132 2 high [],deletion LNX1 NA AC068944.1 AC109349.1 NA NA NA NA NA +4:53557874 4:29127154 LNX1--AC109349.1 BS_H1ZS5FMZ ARRIBA frameshift 10 2 medium [INTRACHROMOSOMAL[chr4:24.26Mb]],deletion/5'-5' LNX1 NA AC109349.1 NA NA NA NA NA NA +3:127781789 10:65481713 MGLL--AL592466.1(166743)/LINC01515(88625) BS_H1ZS5FMZ ARRIBA frameshift 2 0 medium [],translocation MGLL NA AL592466.1 LINC01515 NA NA NA NA NA +14:26595410 14:27077238 NOVA1--AL110292.1 BS_H1ZS5FMZ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.24Mb]],inversion NOVA1 NA AL110292.1 NA NA NA NA NA NA +9:15510117 9:14776256 PSIP1--FREM1 BS_H1ZS5FMZ ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.55Mb]],deletion PSIP1 NA FREM1 NA CosmicCensus, Oncogene NA NA NA NA +9:15510117 9:14776203 PSIP1--FREM1 BS_H1ZS5FMZ ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.55Mb]],deletion PSIP1 NA FREM1 NA CosmicCensus, Oncogene NA NA NA NA +9:15510817 9:14776203 PSIP1--FREM1 BS_H1ZS5FMZ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr9:0.55Mb]],deletion PSIP1 NA FREM1 NA CosmicCensus, Oncogene NA NA NA NA +8:86506995 4:163545743 RMDN1--MARCH1 BS_H1ZS5FMZ ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr8--chr4]],translocation RMDN1 NA MARCH1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_H1ZS5FMZ ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:78432752 16:80685129 WWOX--CDYL2 BS_H1ZS5FMZ ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr16:1.39Mb]],inversion WWOX NA CDYL2 NA TumorSuppressorGene, Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_H3FE3TH9 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_H3FE3TH9 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:138945519 4:139139497 AC109927.1--ELF2 BS_H3FE3TH9 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_REARRANGEMENT:-:[15466]],duplication AC109927.1 NA ELF2 NA NA TranscriptionFactor NA NA NA +4:139012595 4:139059607 AC109927.1--ELF2 BS_H3FE3TH9 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_REARRANGEMENT:-:[15466]],duplication AC109927.1 NA ELF2 NA NA TranscriptionFactor NA NA NA +5:7804692 5:7784365 ADCY2--ADCY2 BS_H3FE3TH9 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_H3FE3TH9 ARRIBA other 9 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +14:89870643 14:89932627 EFCAB11--EFCAB11 BS_H3FE3TH9 ARRIBA other 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_H3FE3TH9 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_H3FE3TH9 ARRIBA in-frame 7 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_H3FE3TH9 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_H3FE3TH9 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_H3FE3TH9 ARRIBA other 22 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_H3FE3TH9 ARRIBA other 4 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_H3Y8FWHV ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +18:79253541 18:79176813 ATP9B--ATP9B BS_H3Y8FWHV ARRIBA frameshift 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +11:15178447 11:15175741 INSC--INSC BS_H3Y8FWHV ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.13Mb]],duplication/non-canonical_splicing INSC NA INSC NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_H3Y8FWHV ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +10:17229391 14:49586588 VIM-AS1--AL139099.5 BS_H3Y8FWHV STARFUSION other 18 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA AL139099.5 NA NA NA NA NA NA +10:17229391 14:49586588 VIM-AS1--RN7SL1 BS_H3Y8FWHV STARFUSION other 18 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA RN7SL1 NA NA NA NA NA NA +12:3366254 12:15578853 AC005865.2(132)/LINC02417(1579)--PTPRO BS_H4B5Y6S0 ARRIBA other 4 1 high [],inversion AC005865.2 LINC02417 PTPRO NA NA NA NA NA NA +12:4910472 12:18088956 AC005906.2--RERGL BS_H4B5Y6S0 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr12:13.05Mb]],inversion AC005906.2 NA RERGL NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_H4B5Y6S0 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_H4B5Y6S0 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_H4B5Y6S0 ARRIBA other 10 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +2:189689964 2:189665376 ANKAR--ASNSD1 BS_H4B5Y6S0 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_REARRANGEMENT:+:[3459]],duplication ANKAR NA ASNSD1 NA NA NA NA NA NA +5:140464776 5:66351228 ANKHD1--AC113378.1(28284)/LINC02229(156316) BS_H4B5Y6S0 ARRIBA frameshift 3 1 high [],inversion ANKHD1 NA AC113378.1 LINC02229 NA NA NA NA NA +5:140464776 5:66351228 ANKHD1-EIF4EBP3--AC113378.1(28284)/LINC02229(156316) BS_H4B5Y6S0 ARRIBA frameshift 3 1 high [],inversion ANKHD1-EIF4EBP3 NA AC113378.1 LINC02229 NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_H4B5Y6S0 ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_H4B5Y6S0 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_H4B5Y6S0 ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_H4B5Y6S0 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +1:243255040 1:243512426 CEP170--AKT3 BS_H4B5Y6S0 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr1:0.23Mb]],duplication CEP170 NA AKT3 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +1:243253102 1:243512426 CEP170--AKT3 BS_H4B5Y6S0 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr1:0.23Mb]],duplication CEP170 NA AKT3 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +1:243255047 1:243512426 CEP170--AKT3 BS_H4B5Y6S0 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr1:0.23Mb]],duplication CEP170 NA AKT3 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +2:15607313 2:2422715 DDX1--MYT1L(91455)/AC018685.2(219274) BS_H4B5Y6S0 ARRIBA frameshift 3 0 high [],duplication DDX1 NA MYT1L AC018685.2 Oncogene TranscriptionFactor NA NA NA +12:112257912 12:4912594 HECTD4--KCNA1 BS_H4B5Y6S0 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:107.24Mb]],inversion HECTD4 NA KCNA1 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_H4B5Y6S0 ARRIBA frameshift 24 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:210104104 2:210220802 KANSL1L--ACADL BS_H4B5Y6S0 ARRIBA frameshift 2 2 high [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]],duplication KANSL1L NA ACADL NA NA NA NA NA NA +12:4911540 12:18417466 KCNA1--PIK3C2G BS_H4B5Y6S0 ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr12:13.33Mb]],inversion/3'-3' KCNA1 NA PIK3C2G NA NA Kinase NA NA NA +12:4910472 12:18088956 KCNA1--RERGL BS_H4B5Y6S0 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr12:13.16Mb]],inversion KCNA1 NA RERGL NA NA NA NA NA NA +5:94384368 5:132340673 KIAA0825--SLC22A4 BS_H4B5Y6S0 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr5:37.68Mb]],duplication/5'-5' KIAA0825 NA SLC22A4 NA NA NA NA NA NA +2:237708630 2:2284503 LRRFIP1--MYT1L BS_H4B5Y6S0 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr2:235.30Mb]],inversion LRRFIP1 NA MYT1L NA Oncogene TranscriptionFactor NA NA NA +2:10684567 2:15402301 NOL10--NBAS BS_H4B5Y6S0 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr2:4.48Mb]],duplication NOL10 NA NBAS NA NA NA NA NA NA +7:100354012 7:92031512 PILRB--AKAP9 BS_H4B5Y6S0 ARRIBA other 2 2 high [INTRACHROMOSOMAL[chr7:8.24Mb]],duplication PILRB NA AKAP9 NA NA CosmicCensus, Oncogene NA NA NA +7:100353270 7:92029924 PILRB--AKAP9 BS_H4B5Y6S0 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr7:8.24Mb]],duplication PILRB NA AKAP9 NA NA CosmicCensus, Oncogene NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_H4B5Y6S0 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +7:100353270 7:92029924 PVRIG2P--AKAP9 BS_H4B5Y6S0 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr7:8.24Mb]],duplication PVRIG2P NA AKAP9 NA NA CosmicCensus, Oncogene NA NA NA +3:181231845 6:159780370 RNU6-4P--SNORA20 BS_H4B5Y6S0 STARFUSION other 8 0 NA [INTERCHROMOSOMAL[chr3--chrY]] RNU6-4P NA SNORA20 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_H4B5Y6S0 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:100354012 7:92031512 STAG3L5P-PVRIG2P-PILRB--AKAP9 BS_H4B5Y6S0 ARRIBA other 2 2 high [INTRACHROMOSOMAL[chr7:8.23Mb]],duplication STAG3L5P-PVRIG2P-PILRB NA AKAP9 NA NA CosmicCensus, Oncogene NA NA NA +7:100353270 7:92029924 STAG3L5P-PVRIG2P-PILRB--AKAP9 BS_H4B5Y6S0 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr7:8.23Mb]],duplication STAG3L5P-PVRIG2P-PILRB NA AKAP9 NA NA CosmicCensus, Oncogene NA NA NA +11:63763687 11:62667747 C11orf95--LBHD1 BS_H4NXBD2D ARRIBA other 2 2 high [INTRACHROMOSOMAL[chr11:1.09Mb]],inversion/3'-3' C11orf95 NA LBHD1 NA NA NA NA NA NA +11:63765368 11:62667774 C11orf95--METTL12 BS_H4NXBD2D ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr11:1.09Mb]],inversion C11orf95 NA METTL12 NA NA NA NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_H4NXBD2D ARRIBA in-frame 36 0 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_H4NXBD2D ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_H4NXBD2D STARFUSION in-frame 37 0 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:62665946 11:63763869 METTL12--C11orf95 BS_H4NXBD2D ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.09Mb]],inversion METTL12 NA C11orf95 NA NA NA NA NA NA +11:31814316 11:64773505 PAX6--SF1 BS_H4NXBD2D ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr11:32.95Mb]],inversion/3'-3' PAX6 NA SF1 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA +11:31814316 11:64773505 RCN1--SF1 BS_H4NXBD2D ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr11:32.66Mb]],inversion RCN1 NA SF1 NA NA NA NA NA NA +11:64776498 11:62597868 SF1--MTA2 BS_H4NXBD2D ARRIBA frameshift 10 1 high [INTRACHROMOSOMAL[chr11:2.16Mb]],inversion/5'-5' SF1 NA MTA2 NA NA NA NA NA NA +11:64775050 11:62591756 SF1--TUT1 BS_H4NXBD2D ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr11:2.17Mb]],inversion/5'-5' SF1 NA TUT1 NA NA NA NA NA NA +3:196053418 3:195708134 TFRC--LINC00969 BS_H4NXBD2D ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr3:0.29Mb]],inversion TFRC NA LINC00969 NA CosmicCensus, Oncogene NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_H4NXBD2D ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_H8A9PSYA ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_H8A9PSYA ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_H8A9PSYA ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_H8A9PSYA ARRIBA other 8 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +4:161759411 4:161776074 FSTL5--FSTL5 BS_H8A9PSYA ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +6:146357694 6:146159348 GRM1--GRM1 BS_H8A9PSYA ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_H8A9PSYA ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_H8A9PSYA ARRIBA in-frame 7 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +6:111482750 6:111674630 REV3L--FYN BS_H8A9PSYA ARRIBA in-frame 2 0 low [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_H8A9PSYA ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52142930 8:52166986 ST18--ST18 BS_H8A9PSYA ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_HA20Y4XY ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_HA20Y4XY ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_HA20Y4XY ARRIBA other 10 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +2:139368484 2:139339254 AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_HA20Y4XY ARRIBA other 4 1 high [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA +5:61755944 5:61703866 C5orf64--C5orf64 BS_HA20Y4XY ARRIBA other 7 1 medium [SELFIE,INTRACHROMOSOMAL[chr5:0.11Mb]],duplication C5orf64 NA C5orf64 NA NA NA NA NA NA +5:61755944 5:61748602 C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_HA20Y4XY ARRIBA other 2 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_HA20Y4XY ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_HA20Y4XY ARRIBA other 10 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_HA20Y4XY ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +13:108898133 13:108883059 MYO16--MYO16 BS_HA20Y4XY ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +17:31265339 17:31786971 NF1--AC007923.1(17923)/AC004253.2(43760) BS_HA20Y4XY ARRIBA frameshift 2 0 low [],deletion NF1 NA AC007923.1 AC004253.2 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +Y:5100707 Y:5098215 PCDH11Y--PCDH11Y BS_HA20Y4XY ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chrY:0.74Mb]],duplication/non-canonical_splicing PCDH11Y NA PCDH11Y NA NA NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_HA20Y4XY ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_HA20Y4XY ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:65601157 5:79130933 AC007389.3--BHMT BS_HB03GSHF ARRIBA other 4 0 medium [FA_CancerSupp,INTERCHROMOSOMAL[chr2--chr5]],translocation AC007389.3 NA BHMT NA NA NA NA NA NA +18:12433000 18:12427041 AP001029.1--PRELID3A BS_HB03GSHF ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr18:0.00Mb],LOCAL_REARRANGEMENT:+:[659]],duplication AP001029.1 NA PRELID3A NA NA NA NA NA NA +8:43180201 5:79130933 HGSNAT--BHMT BS_HB03GSHF ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr8--chr5]],translocation/3'-3' HGSNAT NA BHMT NA NA NA NA NA NA +7:66394350 5:79130933 LINC00174--BHMT BS_HB03GSHF ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation LINC00174 NA BHMT NA NA NA NA NA NA +1:187443726 1:187303466 LINC01037--LINC01036 BS_HB03GSHF ARRIBA other 2 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr1:0.08Mb],LOCAL_REARRANGEMENT:+:[83283]],duplication LINC01037 NA LINC01036 NA NA NA NA NA NA +7:66394350 5:79130933 TPST1--BHMT BS_HB03GSHF ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation/3'-3' TPST1 NA BHMT NA NA NA NA NA NA +8:27604924 5:150412737 CLU--CD74 BS_HBJZR69P ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr8--chr5]],translocation CLU NA CD74 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_HC44ZA0V ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_HC44ZA0V ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:199070153 2:198579708 AC020718.1--AC019330.1 BS_HC44ZA0V ARRIBA other 7 1 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +2:199071420 2:198579708 AC020718.1--AC019330.1 BS_HC44ZA0V ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +2:199071746 2:198579708 AC020718.1--AC019330.1 BS_HC44ZA0V ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +10:17139072 10:17174660 AC067747.1(1487)/TRDMT1(3182)--TRDMT1 BS_HC44ZA0V ARRIBA other 4 0 medium [],duplication AC067747.1 TRDMT1 TRDMT1 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_HC44ZA0V ARRIBA other 8 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_HC44ZA0V STARFUSION other 19 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_HC44ZA0V ARRIBA in-frame 31 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +6:44376473 6:44352726 AL353588.1--AL353588.1 BS_HC44ZA0V ARRIBA other 23 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing AL353588.1 NA AL353588.1 NA NA NA NA NA NA +6:164525073 6:135185903 AL358972.1(176429)/AL450345.1(302677)--MYB BS_HC44ZA0V ARRIBA other 2 0 medium [],duplication AL358972.1 AL450345.1 MYB NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +6:157148951 6:143942663 ARID1B--PLAGL1 BS_HC44ZA0V ARRIBA in-frame 19 1 high [INTRACHROMOSOMAL[chr6:12.71Mb]],inversion ARID1B NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +6:157148981 6:143942663 ARID1B--PLAGL1 BS_HC44ZA0V ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr6:12.71Mb]],inversion ARID1B NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +6:157148951 6:143942663 ARID1B--PLAGL1 BS_HC44ZA0V STARFUSION in-frame 20 1 NA [INTRACHROMOSOMAL[chr6:12.71Mb]] ARID1B NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +6:156935576 6:163455279 ARID1B--QKI BS_HC44ZA0V ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr6:6.20Mb]],deletion ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA +6:156829421 6:163455279 ARID1B--QKI BS_HC44ZA0V ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr6:6.20Mb]],deletion ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA +6:157084905 6:163455279 ARID1B--QKI BS_HC44ZA0V ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr6:6.20Mb]],deletion ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA +6:156901525 6:163455279 ARID1B--QKI BS_HC44ZA0V ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:6.20Mb]],deletion ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA +6:157110561 6:163455279 ARID1B--QKI BS_HC44ZA0V ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr6:6.20Mb]],deletion ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA +6:157036876 6:163455279 ARID1B--QKI BS_HC44ZA0V ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:6.20Mb]],deletion ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA +6:34696446 6:112731935 C6orf106--AL358942.1(114055)/AL360085.1(94004) BS_HC44ZA0V ARRIBA frameshift 4 0 high [],duplication C6orf106 NA AL358942.1 AL360085.1 NA NA NA NA NA +6:34696446 6:112769584 C6orf106--AL358942.1(151704)/AL360085.1(56355) BS_HC44ZA0V ARRIBA frameshift 8 1 high [],duplication C6orf106 NA AL358942.1 AL360085.1 NA NA NA NA NA +X:36205110 X:36179345 CFAP47--CFAP47 BS_HC44ZA0V ARRIBA frameshift 24 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +6:116399666 6:141323925 DSE--AL357080.1(303899)/AL355596.1(123086) BS_HC44ZA0V ARRIBA frameshift 5 0 high [],deletion DSE NA AL357080.1 AL355596.1 NA NA NA NA NA +6:116399662 6:141446009 DSE--AL357080.1(425983)/AL355596.1(1002) BS_HC44ZA0V ARRIBA frameshift 7 0 low [],deletion DSE NA AL357080.1 AL355596.1 NA NA NA NA NA +6:131063155 6:134085795 EPB41L2--SLC2A12(33159)/HMGA1P7(29440) BS_HC44ZA0V ARRIBA other 6 0 medium [],inversion EPB41L2 NA SLC2A12 HMGA1P7 NA NA NA NA NA +6:111780566 6:34654779 FYN--C6orf106 BS_HC44ZA0V ARRIBA other 14 1 high [INTRACHROMOSOMAL[chr6:76.96Mb]],deletion FYN NA C6orf106 NA Kinase, Oncogene, Kinase NA NA NA NA +6:111780566 6:34654779 FYN--C6orf106 BS_HC44ZA0V STARFUSION other 15 1 NA [INTRACHROMOSOMAL[chr6:76.96Mb]] FYN NA C6orf106 NA Kinase, Oncogene, Kinase NA NA NA NA +6:39540003 6:116463283 KIF6--FAM26F BS_HC44ZA0V ARRIBA frameshift 14 3 high [INTRACHROMOSOMAL[chr6:76.74Mb]],inversion KIF6 NA FAM26F NA NA NA NA NA NA +6:39540003 6:116463283 KIF6--FAM26F BS_HC44ZA0V STARFUSION frameshift 14 3 NA [INTRACHROMOSOMAL[chr6:76.74Mb]] KIF6 NA FAM26F NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_HC44ZA0V ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96920125 12:96589427 NEDD1--CFAP54 BS_HC44ZA0V ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +6:138571710 6:132883938 NHSL1--HMGB1P13(15079)/AL137783.1(7986) BS_HC44ZA0V ARRIBA frameshift 7 0 high [],inversion NHSL1 NA HMGB1P13 AL137783.1 NA NA NA NA NA +12:95682707 12:95833084 NTN4--AC090001.1 BS_HC44ZA0V ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:95665810 12:95833084 NTN4--AC090001.1 BS_HC44ZA0V ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:95710441 12:95833084 NTN4--AC090001.1 BS_HC44ZA0V ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:95786939 12:95833084 NTN4--AC090001.1 BS_HC44ZA0V ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +6:163455421 6:156776862 QKI--AL355297.4 BS_HC44ZA0V ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr6:6.64Mb]],duplication/5'-5' QKI NA AL355297.4 NA TumorSuppressorGene, CosmicCensus NA NA NA NA +6:163455421 6:156829227 QKI--ARID1B BS_HC44ZA0V ARRIBA in-frame 30 4 high [INTRACHROMOSOMAL[chr6:6.20Mb]],duplication QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA +6:163457551 6:156829227 QKI--ARID1B BS_HC44ZA0V ARRIBA in-frame 14 4 high [INTRACHROMOSOMAL[chr6:6.20Mb]],duplication QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA +6:163455421 6:156829227 QKI--ARID1B BS_HC44ZA0V STARFUSION in-frame 33 5 NA [INTRACHROMOSOMAL[chr6:6.20Mb]] QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA +6:163457551 6:156829227 QKI--ARID1B BS_HC44ZA0V STARFUSION other 17 5 NA [INTRACHROMOSOMAL[chr6:6.20Mb]] QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_HC44ZA0V ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:134052378 6:130977437 SLC2A12--EPB41L2 BS_HC44ZA0V ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr6:2.93Mb]],inversion/5'-5' SLC2A12 NA EPB41L2 NA NA NA NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_HC44ZA0V ARRIBA other 1 1 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +14:93487755 14:93466698 UNC79--UNC79 BS_HC44ZA0V ARRIBA frameshift 2 1 medium [SELFIE,INTRACHROMOSOMAL[chr14:0.37Mb]],duplication UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_HC5M8JTC ARRIBA other 50 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_HC5M8JTC ARRIBA other 50 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:33561027 5:33624351 ADAMTS12--ADAMTS12 BS_HC5M8JTC ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.37Mb]],duplication/non-canonical_splicing ADAMTS12 NA ADAMTS12 NA NA NA NA NA NA +14:49586866 6:52995797 AL139099.5--7SK BS_HC5M8JTC STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +14:49586856 6:52995798 AL139099.5--7SK BS_HC5M8JTC STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_HC5M8JTC ARRIBA other 6 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178859489 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_HC5M8JTC ARRIBA other 4 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178748404 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_HC5M8JTC ARRIBA other 2 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +14:49586866 6:52995797 RN7SL1--7SK BS_HC5M8JTC STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +14:49586856 6:52995798 RN7SL1--7SK BS_HC5M8JTC STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_HC5M8JTC ARRIBA other 50 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_HCP5C912 ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_HCP5C912 ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_HCP5C912 ARRIBA other 12 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +7:130884317 7:130984109 AC016831.1--LINC-PINT BS_HCP5C912 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.03Mb],LOCAL_REARRANGEMENT:-:[28450]],duplication AC016831.1 NA LINC-PINT NA NA TumorSuppressorGene NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_HCP5C912 ARRIBA other 16 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_HCP5C912 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_HCP5C912 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_HCP5C912 ARRIBA other 4 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_HCP5C912 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_HCP5C912 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_HCP5C912 ARRIBA frameshift 29 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211103496 1:211107377 AL590132.1--KCNH1 BS_HCP5C912 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_HCP5C912 ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_HCP5C912 ARRIBA frameshift 28 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_HCP5C912 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_HCP5C912 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_HCP5C912 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211107377 AL590132.1--KCNH1 BS_HCP5C912 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +18:79307234 18:79193183 ATP9B--ATP9B BS_HCP5C912 ARRIBA in-frame 24 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_HCP5C912 ARRIBA frameshift 18 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_HCP5C912 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_HCP5C912 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +10:12998338 10:13074100 CCDC3--CCDC3 BS_HCP5C912 ARRIBA frameshift 13 2 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA +16:61817479 16:61825179 CDH8--CDH8 BS_HCP5C912 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.39Mb]],duplication/non-canonical_splicing CDH8 NA CDH8 NA NA NA NA NA NA +12:119752050 12:119761055 CIT--CIT BS_HCP5C912 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.19Mb]],duplication/non-canonical_splicing CIT NA CIT NA Kinase Kinase NA NA NA +10:103076270 10:103049707 CNNM2--CNNM2 BS_HCP5C912 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.17Mb]],duplication/non-canonical_splicing CNNM2 NA CNNM2 NA NA NA NA NA NA +3:2903005 3:2883145 CNTN4--CNTN4 BS_HCP5C912 ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA +8:3018477 8:3029513 CSMD1--CSMD1 BS_HCP5C912 ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr8:2.06Mb]],duplication/non-canonical_splicing CSMD1 NA CSMD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_HCP5C912 ARRIBA in-frame 23 4 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +4:150239875 4:150203795 DCLK2--DCLK2 BS_HCP5C912 ARRIBA frameshift 21 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.18Mb]],duplication/non-canonical_splicing DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_HCP5C912 ARRIBA frameshift 33 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +9:23762006 9:23765099 ELAVL2--ELAVL2 BS_HCP5C912 ARRIBA frameshift 17 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_HCP5C912 ARRIBA in-frame 168 23 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_HCP5C912 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +1:74492266 1:74439490 FPGT-TNNI3K--FPGT-TNNI3K BS_HCP5C912 ARRIBA frameshift 5 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA +9:98385640 9:98406141 GABBR2--GABBR2 BS_HCP5C912 ARRIBA in-frame 10 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.42Mb]],duplication/non-canonical_splicing GABBR2 NA GABBR2 NA NA NA NA NA NA +X:152189730 X:152208144 GABRA3--GABRA3 BS_HCP5C912 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.29Mb]],duplication/non-canonical_splicing GABRA3 NA GABRA3 NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_HCP5C912 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +2:31114743 2:31132712 GALNT14--GALNT14 BS_HCP5C912 ARRIBA frameshift 9 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.24Mb]],duplication/non-canonical_splicing GALNT14 NA GALNT14 NA NA NA NA NA NA +5:153770415 5:153764434 GRIA1--GRIA1 BS_HCP5C912 ARRIBA in-frame 14 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.32Mb]],duplication/non-canonical_splicing GRIA1 NA GRIA1 NA NA NA NA NA NA +6:101686353 6:101620093 GRIK2--GRIK2 BS_HCP5C912 ARRIBA frameshift 15 1 high [SELFIE,INTRACHROMOSOMAL[chr6:0.67Mb]],duplication GRIK2 NA GRIK2 NA NA NA NA NA NA +11:120836844 11:120815378 GRIK4--GRIK4 BS_HCP5C912 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.48Mb]],duplication/non-canonical_splicing GRIK4 NA GRIK4 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_HCP5C912 ARRIBA frameshift 15 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +16:27807487 16:27828956 GSG1L--GSG1L BS_HCP5C912 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.28Mb]],duplication/non-canonical_splicing GSG1L NA GSG1L NA NA NA NA NA NA +7:43501322 7:43492075 HECW1--HECW1 BS_HCP5C912 ARRIBA frameshift 16 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +3:119105144 3:119173718 IGSF11--UPK1B BS_HCP5C912 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:0.03Mb],LOCAL_INVERSION:-:+:[27449]],duplication/5'-5' IGSF11 NA UPK1B NA NA NA NA NA TCGAFusion +12:67436 6:184140 IQSEC3--AL035696.3 BS_HCP5C912 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_HCP5C912 ARRIBA frameshift 29 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_HCP5C912 ARRIBA frameshift 28 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_HCP5C912 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:211019256 KCNH1--AL590132.1 BS_HCP5C912 ARRIBA in-frame 1 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_HCP5C912 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211082898 KCNH1--AL590132.1 BS_HCP5C912 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_HCP5C912 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_HCP5C912 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_HCP5C912 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_HCP5C912 ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_HCP5C912 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211107377 KCNH1--AL590132.1 BS_HCP5C912 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211103496 1:211107377 KCNH1--AL590132.1 BS_HCP5C912 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_HCP5C912 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_HCP5C912 ARRIBA frameshift 29 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_HCP5C912 ARRIBA frameshift 16 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_HCP5C912 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_HCP5C912 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_HCP5C912 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +1:196373140 1:196479238 KCNT2--KCNT2 BS_HCP5C912 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_HCP5C912 ARRIBA frameshift 22 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +8:89596419 8:89628299 KRT8P4(181348)/AF117829.1(12990)--AF117829.1 BS_HCP5C912 ARRIBA other 1 0 low [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +2:8201947 2:8245140 LINC00299--LINC00298 BS_HCP5C912 ARRIBA other 5 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00299 NA LINC00298 NA NA NA NA NA NA +2:8201947 2:8245140 LINC00299--LINC00299 BS_HCP5C912 ARRIBA other 6 0 high [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA +7:30391035 7:30350761 LINC01176--ZNRF2 BS_HCP5C912 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_REARRANGEMENT:+:[23193]],duplication LINC01176 NA ZNRF2 NA NA NA NA NA NA +7:30391035 7:30362377 LINC01176--ZNRF2 BS_HCP5C912 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_REARRANGEMENT:+:[23193]],duplication LINC01176 NA ZNRF2 NA NA NA NA NA NA +12:66123568 12:66153448 LLPH--TMBIM4 BS_HCP5C912 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_REARRANGEMENT:-:[5078]],duplication LLPH NA TMBIM4 NA NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_HCP5C912 ARRIBA in-frame 35 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_HCP5C912 ARRIBA other 13 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +X:20042502 X:20052988 MAP7D2--MAP7D2 BS_HCP5C912 ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chrX:0.11Mb]],duplication/non-canonical_splicing MAP7D2 NA MAP7D2 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_HCP5C912 ARRIBA frameshift 16 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +14:46920012 14:47035304 MDGA2--MDGA2 BS_HCP5C912 ARRIBA frameshift 26 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +8:74612940 8:74500513 MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_HCP5C912 ARRIBA other 4 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA +8:88056128 8:88167973 MMP16--MMP16 BS_HCP5C912 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.30Mb]],duplication/non-canonical_splicing MMP16 NA MMP16 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_HCP5C912 ARRIBA other 7 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +8:17331150 8:17361274 MTMR7--MTMR7 BS_HCP5C912 ARRIBA in-frame 6 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_HCP5C912 ARRIBA other 27 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_HCP5C912 ARRIBA frameshift 13 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_HCP5C912 ARRIBA in-frame 8 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_HCP5C912 ARRIBA in-frame 19 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +12:44665484 12:44714741 NELL2--NELL2 BS_HCP5C912 ARRIBA in-frame 19 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_HCP5C912 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +15:27844959 15:27926254 OCA2--OCA2 BS_HCP5C912 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.34Mb]],duplication/non-canonical_splicing OCA2 NA OCA2 NA NA NA NA NA NA +7:77951712 7:77920279 PHTF2--PHTF2 BS_HCP5C912 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA +13:72932698 13:72908531 PIBF1--PIBF1 BS_HCP5C912 ARRIBA in-frame 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr13:0.23Mb]],duplication PIBF1 NA PIBF1 NA NA NA NA NA NA +17:6525356 17:6600458 PITPNM3--KIAA0753 BS_HCP5C912 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA +17:6525356 17:6590630 PITPNM3--KIAA0753 BS_HCP5C912 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA +17:6525356 17:6590578 PITPNM3--KIAA0753 BS_HCP5C912 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_HCP5C912 ARRIBA in-frame 60 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:62689699 12:62720289 PPM1H--PPM1H BS_HCP5C912 ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.29Mb]],duplication/non-canonical_splicing PPM1H NA PPM1H NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_HCP5C912 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_HCP5C912 ARRIBA other 30 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:158617205 4:158607972 RXFP1--RXFP1 BS_HCP5C912 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA +6:130288227 6:130313093 SAMD3--SAMD3 BS_HCP5C912 ARRIBA other 6 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA +4:118797683 4:118817412 SEC24D--SEC24D BS_HCP5C912 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing SEC24D NA SEC24D NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_HCP5C912 ARRIBA other 14 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +2:171868681 2:171893258 SLC25A12--SLC25A12 BS_HCP5C912 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.22Mb]],duplication/non-canonical_splicing SLC25A12 NA SLC25A12 NA NA NA NA NA NA +12:21292164 12:21306988 SLCO1A2--SLCO1A2 BS_HCP5C912 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA +8:50553179 8:50502778 SNTG1--SNTG1 BS_HCP5C912 ARRIBA in-frame 15 3 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +10:105147796 10:105105397 SORCS3--SORCS3 BS_HCP5C912 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.62Mb]],duplication/non-canonical_splicing SORCS3 NA SORCS3 NA NA NA NA NA NA +12:49500205 12:49484590 SPATS2--SPATS2 BS_HCP5C912 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.16Mb]],duplication/non-canonical_splicing SPATS2 NA SPATS2 NA NA NA NA NA NA +6:147052586 6:147119477 STXBP5-AS1--STXBP5-AS1 BS_HCP5C912 ARRIBA other 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.36Mb]],duplication STXBP5-AS1 NA STXBP5-AS1 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_HCP5C912 ARRIBA in-frame 13 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_HCP5C912 ARRIBA other 6 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:134713200 2:134869041 TMEM163--CCNT2-AS1 BS_HCP5C912 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA +2:134502901 2:134869041 TMEM163--CCNT2-AS1 BS_HCP5C912 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_HD4EJYE3 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_HD4EJYE3 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:9707976 7:9760063 AC096553.1(72273)/AC060834.1(18265)--AC060834.2 BS_HD4EJYE3 ARRIBA other 8 1 medium [],duplication AC096553.1 AC060834.1 AC060834.2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_HD4EJYE3 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_HD4EJYE3 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_HD4EJYE3 ARRIBA other 4 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +17:67945890 9:128566737 BPTF--SPTAN1 BS_HD4EJYE3 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr17--chr9]],translocation BPTF NA SPTAN1 NA TranscriptionFactor Oncogene NA NA NA +7:154053063 7:149891301 DPP6--AC092681.1 BS_HD4EJYE3 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:3.98Mb]],inversion DPP6 NA AC092681.1 NA NA NA NA NA NA +12:120446829 12:120438379 GATC--COX6A1 BS_HD4EJYE3 ARRIBA frameshift 70 1 high [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_REARRANGEMENT:+:[5696]],duplication GATC NA COX6A1 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_HD4EJYE3 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_HD4EJYE3 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +6:52995907 14:49862652 RN7SK--RN7SL2 BS_HD4EJYE3 STARFUSION other 5 10 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +14:49862572 6:52995793 RN7SL2--7SK BS_HD4EJYE3 STARFUSION other 8 12 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862560 6:52995723 RN7SL2--7SK BS_HD4EJYE3 STARFUSION other 4 12 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862563 6:52995776 RN7SL2--7SK BS_HD4EJYE3 STARFUSION other 4 12 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862568 6:52995787 RN7SL2--7SK BS_HD4EJYE3 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862563 6:52995796 RN7SL2--7SK BS_HD4EJYE3 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_HD4EJYE3 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:159142446 7:159166924 VIPR2--VIPR2(21967)/PIP5K1P2(64511) BS_HD4EJYE3 ARRIBA frameshift 3 0 medium [],inversion VIPR2 NA VIPR2 PIP5K1P2 NA NA NA NA NA +8:140560374 20:15802608 AGO2--MACROD2 BS_HE57E1RP ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr8--chr20]],translocation AGO2 NA MACROD2 NA NA NA NA NA NA +8:140560374 20:15862745 AGO2--MACROD2 BS_HE57E1RP ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr8--chr20]],translocation AGO2 NA MACROD2 NA NA NA NA NA NA +8:127168898 8:144223108 CASC19--MROH1 BS_HE57E1RP ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr8:16.92Mb]],inversion CASC19 NA MROH1 NA NA NA NA NA NA +8:96835180 8:88873693 CPQ--AC090578.1(64785)/RPSAP74(369708) BS_HE57E1RP ARRIBA frameshift 2 0 medium [],duplication CPQ NA AC090578.1 RPSAP74 NA NA NA NA NA +8:144250366 8:96433225 MROH1--RNU6-1172P(2065)/SDC2(60126) BS_HE57E1RP ARRIBA frameshift 3 0 medium [],duplication MROH1 NA RNU6-1172P SDC2 NA NA NA NA NA +1:171485735 1:183806375 PRRC2C--RGL1 BS_HE57E1RP ARRIBA other 7 2 high [INTRACHROMOSOMAL[chr1:12.04Mb]],deletion PRRC2C NA RGL1 NA NA Oncogene NA NA NA +1:171485735 1:183847566 PRRC2C--RGL1 BS_HE57E1RP ARRIBA other 7 1 high [INTRACHROMOSOMAL[chr1:12.04Mb]],deletion PRRC2C NA RGL1 NA NA Oncogene NA NA NA +8:127794734 8:130236994 PVT1_1--ASAP1 BS_HE57E1RP ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr8:2.26Mb]],inversion PVT1_1 NA ASAP1 NA NA NA NA NA NA +8:127794734 8:91189522 PVT1_1--LRRC69 BS_HE57E1RP ARRIBA other 47 4 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1_1 NA LRRC69 NA NA NA NA NA NA +8:127794734 8:91200613 PVT1_1--LRRC69 BS_HE57E1RP ARRIBA other 34 2 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1_1 NA LRRC69 NA NA NA NA NA NA +8:127794734 8:91218890 PVT1_1--LRRC69 BS_HE57E1RP ARRIBA other 30 1 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1_1 NA LRRC69 NA NA NA NA NA NA +8:127794734 8:91133110 PVT1_1--LRRC69 BS_HE57E1RP ARRIBA other 24 4 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1_1 NA LRRC69 NA NA NA NA NA NA +8:127794732 8:91200611 PVT1_1--LRRC69 BS_HE57E1RP ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1_1 NA LRRC69 NA NA NA NA NA NA +8:127794734 8:91218890 PVT1_1--SLC26A7 BS_HE57E1RP ARRIBA other 60 1 high [INTRACHROMOSOMAL[chr8:36.40Mb]],duplication PVT1_1 NA SLC26A7 NA NA NA NA NA NA +8:127794734 8:91249539 PVT1_1--SLC26A7 BS_HE57E1RP ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr8:36.40Mb]],duplication PVT1_1 NA SLC26A7 NA NA NA NA NA NA +8:127794734 8:91249619 PVT1_1--SLC26A7 BS_HE57E1RP ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:36.40Mb]],duplication PVT1_1 NA SLC26A7 NA NA NA NA NA NA +8:127794734 8:130236994 PVT1--ASAP1 BS_HE57E1RP ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr8:1.95Mb]],inversion PVT1 NA ASAP1 NA Oncogene NA NA NA NA +8:127794734 8:91189522 PVT1--LRRC69 BS_HE57E1RP ARRIBA other 47 4 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA +8:127794734 8:91200613 PVT1--LRRC69 BS_HE57E1RP ARRIBA other 35 2 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA +8:127794734 8:91218890 PVT1--LRRC69 BS_HE57E1RP ARRIBA other 34 1 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA +8:127794734 8:91133110 PVT1--LRRC69 BS_HE57E1RP ARRIBA other 25 4 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA +8:127796071 8:91133110 PVT1--LRRC69 BS_HE57E1RP ARRIBA other 6 5 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA +8:127796008 8:91133110 PVT1--LRRC69 BS_HE57E1RP ARRIBA other 1 5 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA +8:127796071 8:91189522 PVT1--LRRC69 BS_HE57E1RP ARRIBA other 2 4 high [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA +8:127796008 8:91218890 PVT1--LRRC69 BS_HE57E1RP ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA +8:127796008 8:91200613 PVT1--LRRC69 BS_HE57E1RP ARRIBA other 2 2 medium [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA +8:127794732 8:91200611 PVT1--LRRC69 BS_HE57E1RP ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA +8:127796071 8:91218890 PVT1--LRRC69 BS_HE57E1RP ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr8:36.58Mb]],duplication PVT1 NA LRRC69 NA Oncogene NA NA NA NA +8:127794734 8:127738248 PVT1--MYC BS_HE57E1RP ARRIBA other 2 0 low [GTEx,ChimerPub,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr8:0.05Mb],LOCAL_REARRANGEMENT:+:[53099]],duplication PVT1 NA MYC NA Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +8:127794734 8:91218890 PVT1--SLC26A7 BS_HE57E1RP ARRIBA other 64 1 high [INTRACHROMOSOMAL[chr8:36.40Mb]],duplication PVT1 NA SLC26A7 NA Oncogene NA NA NA NA +8:127796008 8:91218890 PVT1--SLC26A7 BS_HE57E1RP ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr8:36.40Mb]],duplication PVT1 NA SLC26A7 NA Oncogene NA NA NA NA +8:127794734 8:91249539 PVT1--SLC26A7 BS_HE57E1RP ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr8:36.40Mb]],duplication PVT1 NA SLC26A7 NA Oncogene NA NA NA NA +8:127794734 8:91249619 PVT1--SLC26A7 BS_HE57E1RP ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:36.40Mb]],duplication PVT1 NA SLC26A7 NA Oncogene NA NA NA NA +8:127796008 8:91249539 PVT1--SLC26A7 BS_HE57E1RP ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:36.40Mb]],duplication PVT1 NA SLC26A7 NA Oncogene NA NA NA NA +8:103501062 8:88919817 RIMS2--AC090578.1(110909)/RPSAP74(323584) BS_HE57E1RP ARRIBA frameshift 1 0 low [],inversion RIMS2 NA AC090578.1 RPSAP74 NA NA NA NA NA +8:103501062 8:88882061 RIMS2--AC090578.1(73153)/RPSAP74(361340) BS_HE57E1RP ARRIBA frameshift 7 0 high [],inversion RIMS2 NA AC090578.1 RPSAP74 NA NA NA NA NA +8:100225339 8:127169117 SPAG1--CASC19 BS_HE57E1RP ARRIBA frameshift 10 0 high [INTRACHROMOSOMAL[chr8:26.81Mb]],inversion SPAG1 NA CASC19 NA NA NA NA NA NA +8:100225339 8:127169117 SPAG1--CASC19 BS_HE57E1RP STARFUSION other 12 0 NA [INTRACHROMOSOMAL[chr8:26.81Mb]] SPAG1 NA CASC19 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_HF3RNN2T ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_HF3RNN2T ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:58586214 19:58525479 AC016629.2--ZBTB45 BS_HF3RNN2T ARRIBA other 9 0 medium [INTRACHROMOSOMAL[chr19:0.05Mb],LOCAL_INVERSION:+:-:[47247]],duplication/5'-5' AC016629.2 NA ZBTB45 NA NA TranscriptionFactor NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_HF3RNN2T ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +9:2904777 9:3014177 ATP5HP2(3973)/CARM1P1(2296)--CARM1P1 BS_HF3RNN2T ARRIBA other 4 0 high [],duplication ATP5HP2 CARM1P1 CARM1P1 NA NA NA NA NA NA +9:100585927 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_HF3RNN2T ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_HF3RNN2T ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_HF3RNN2T ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100572518 CAVIN4--TMEFF1 BS_HF3RNN2T ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_HF3RNN2T ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100561397 CAVIN4--TMEFF1 BS_HF3RNN2T ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +19:58575588 19:58345931 CENPBD1P1--A1BG BS_HF3RNN2T ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr19:0.22Mb]],duplication/5'-5' CENPBD1P1 NA A1BG NA NA NA NA NA NA +19:58575588 19:58306088 CENPBD1P1--AC020915.1 BS_HF3RNN2T ARRIBA other 7 0 high [INTRACHROMOSOMAL[chr19:0.26Mb]],duplication CENPBD1P1 NA AC020915.1 NA NA NA NA NA NA +19:58575588 19:58306088 CENPBD1P1--AC020915.2 BS_HF3RNN2T ARRIBA other 7 0 high [INTRACHROMOSOMAL[chr19:0.26Mb]],duplication CENPBD1P1 NA AC020915.2 NA NA NA NA NA NA +19:58575588 19:58306088 CENPBD1P1--AC020915.6 BS_HF3RNN2T ARRIBA other 7 0 high [INTRACHROMOSOMAL[chr19:0.26Mb]],duplication CENPBD1P1 NA AC020915.6 NA NA NA NA NA NA +19:58586214 19:58525479 CENPBD1P1--ZBTB45 BS_HF3RNN2T ARRIBA other 9 0 medium [INTRACHROMOSOMAL[chr19:0.03Mb],LOCAL_INVERSION:+:-:[34592]],duplication/5'-5' CENPBD1P1 NA ZBTB45 NA NA TranscriptionFactor NA NA NA +6:65490594 6:65495993 EYS--EYS BS_HF3RNN2T ARRIBA frameshift 12 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_HF3RNN2T ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_HF3RNN2T ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_HF3RNN2T ARRIBA frameshift 20 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:114981512 1:114923449 SYCP1--SYCP1 BS_HF3RNN2T ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_HHPA8NJ2 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_HHPA8NJ2 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_HHPA8NJ2 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +5:91102340 5:90781430 ADGRV1--ADGRV1 BS_HHPA8NJ2 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_HHPA8NJ2 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_HHPA8NJ2 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_HHPA8NJ2 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_HHPA8NJ2 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_HHPA8NJ2 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_HHPA8NJ2 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_HHPA8NJ2 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_HHPA8NJ2 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100561397 CAVIN4--TMEFF1 BS_HHPA8NJ2 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +2:218403417 2:201138993 CTDSP1--CFLAR BS_HHPA8NJ2 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr2:17.22Mb]],inversion/3'-3' CTDSP1 NA CFLAR NA NA Oncogene NA NA NA +2:218403417 2:201138993 CTDSP1--IMPDH1P10 BS_HHPA8NJ2 ARRIBA frameshift 3 0 high [GTEx,CCLE,INTRACHROMOSOMAL[chr2:17.26Mb]],inversion CTDSP1 NA IMPDH1P10 NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_HHPA8NJ2 ARRIBA frameshift 24 2 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_HHPA8NJ2 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_HHPA8NJ2 ARRIBA other 3 0 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_HHPA8NJ2 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_HHPA8NJ2 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161710751 2:161620915 SLC4A10--SLC4A10 BS_HHPA8NJ2 ARRIBA other 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_HHPA8NJ2 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:114947320 1:114923449 SYCP1--SYCP1 BS_HHPA8NJ2 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +1:216321883 1:216327654 USH2A--USH2A BS_HHPA8NJ2 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +12:39822629 12:40048210 C12orf40--SLC2A13 BS_HJRTC9JQ ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/3'-3' C12orf40 NA SLC2A13 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_HKZENFDA ARRIBA other 16 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +9:100585927 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_HKZENFDA ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_HKZENFDA ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_HKZENFDA ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100561397 CAVIN4--TMEFF1 BS_HKZENFDA ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_HKZENFDA ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_HKZENFDA ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +2:164771944 2:165162828 COBLL1--SCN3A BS_HKZENFDA ARRIBA other 11 1 high [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.24Mb]],duplication COBLL1 NA SCN3A NA NA NA NA NA TCGAFusion +2:164771944 2:165162828 COBLL1--SCN3A BS_HKZENFDA STARFUSION other 11 1 NA [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.24Mb]] COBLL1 NA SCN3A NA NA NA NA NA TCGAFusion +6:65490594 6:65495993 EYS--EYS BS_HKZENFDA ARRIBA frameshift 22 9 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +17:28766586 17:29197799 FAM222B--AC005412.3 BS_HKZENFDA ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr17:0.34Mb]],duplication FAM222B NA AC005412.3 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_HKZENFDA ARRIBA frameshift 14 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +19:1021629 18:49814292 RNU6-2--SNHG22 BS_HKZENFDA ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr19--chr18]],translocation RNU6-2 NA SNHG22 NA NA NA NA NA NA +12:97721822 3:186787310 RNU6-36P--EIF4A2 BS_HKZENFDA STARFUSION other 7 0 NA [FA_CancerSupp,INTERCHROMOSOMAL[chr12--chr3]] RNU6-36P NA EIF4A2 NA NA CosmicCensus, Oncogene NA NA NA +X:141118027 17:38852911 RNU6-3P--RPL23 BS_HKZENFDA STARFUSION other 7 0 NA [FA_CancerSupp,INTERCHROMOSOMAL[chrX--chr17]] RNU6-3P NA RPL23 NA NA NA NA NA NA +X:141118028 9:133350861 RNU6-3P--RPL7A BS_HKZENFDA STARFUSION other 7 0 NA [FA_CancerSupp,INTERCHROMOSOMAL[chrX--chr9]] RNU6-3P NA RPL7A NA NA NA NA NA NA +X:141118027 17:38852911 RNU6-3P--SNORA21 BS_HKZENFDA STARFUSION other 7 0 NA [INTERCHROMOSOMAL[chrX--chr17]] RNU6-3P NA SNORA21 NA NA NA NA NA NA +X:141118025 2:231455922 RNU6-3P--SNORA75 BS_HKZENFDA STARFUSION other 6 0 NA [INTERCHROMOSOMAL[chrX--chr12]] RNU6-3P NA SNORA75 NA NA NA NA NA NA +X:141118028 9:133350861 RNU6-3P--SNORD36C BS_HKZENFDA STARFUSION other 7 0 NA [INTERCHROMOSOMAL[chrX--chr9]] RNU6-3P NA SNORD36C NA NA NA NA NA NA +3:181231846 1:235127925 RNU6-4P--SNORA14B BS_HKZENFDA STARFUSION other 17 0 NA [INTERCHROMOSOMAL[chr3--chr1]] RNU6-4P NA SNORA14B NA NA NA NA NA NA +3:181231845 6:159780370 RNU6-4P--SNORA20 BS_HKZENFDA STARFUSION other 27 0 NA [INTERCHROMOSOMAL[chr3--chrY]] RNU6-4P NA SNORA20 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--METTL12 BS_HKZENFDA STARFUSION other 43 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893590 12:6581597 RNU6-9--SCARNA11 BS_HKZENFDA STARFUSION other 10 0 NA [INTERCHROMOSOMAL[chr19--chr12]] RNU6-9 NA SCARNA11 NA NA NA NA NA NA +19:893590 17:64146346 RNU6-9--SNHG25 BS_HKZENFDA STARFUSION other 13 0 NA [INTERCHROMOSOMAL[chr19--chr17]] RNU6-9 NA SNHG25 NA NA NA NA NA NA +19:893590 17:64146346 RNU6-9--SNORA50 BS_HKZENFDA STARFUSION other 13 0 NA [INTERCHROMOSOMAL[chr19--chr17]] RNU6-9 NA SNORA50 NA NA NA NA NA NA +19:893590 17:64146346 RNU6-9--SNORA50C BS_HKZENFDA STARFUSION other 13 0 NA [INTERCHROMOSOMAL[chr19--chr17]] RNU6-9 NA SNORA50C NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--SNORA57 BS_HKZENFDA STARFUSION other 43 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +1:114947320 1:114923449 SYCP1--SYCP1 BS_HKZENFDA ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +4:103656194 4:103658403 TACR3--TACR3 BS_HKZENFDA ARRIBA frameshift 15 2 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_HQ5BJ6MW ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_HQ5BJ6MW ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:89757045 8:88894060 AF117829.1--AC090578.1(85152)/RPSAP74(349341) BS_HQ5BJ6MW ARRIBA other 2 0 medium [],deletion AF117829.1 NA AC090578.1 RPSAP74 NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_HQ5BJ6MW ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_HQ5BJ6MW ARRIBA other 4 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138853891 7:140792944 KIAA1549--BRAF BS_HQ5BJ6MW ARRIBA other 1 1 medium [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138861139 7:140787584 KIAA1549--BRAF BS_HQ5BJ6MW ARRIBA in-frame 1 1 medium [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_HQ5BJ6MW ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_HSHN8PBB ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_HSHN8PBB ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_HSHN8PBB ARRIBA other 7 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_HSHN8PBB ARRIBA in-frame 3 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_HSHN8PBB ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_HTEPAKCM ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_HTEPAKCM ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_HV8PFRBR ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_HV8PFRBR ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_HV8PFRBR ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_HV8PFRBR STARFUSION other 4 9 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +3:178748404 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_HV8PFRBR ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +17:45996664 17:45987040 MAPT--MAPT BS_HV8PFRBR ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_HV8PFRBR ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_HV8PFRBR ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_HV8PFRBR ARRIBA other 3 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_HX0S30NE ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_HX0S30NE ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:140794308 7:138519189 BRAF--TRIM24 BS_HX0S30NE ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:2.13Mb]],inversion BRAF NA TRIM24 NA Kinase, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene NA NA TCGAFusion +7:116862650 7:140800481 CAPZA2--BRAF BS_HX0S30NE ARRIBA frameshift 22 0 medium [INTRACHROMOSOMAL[chr7:23.80Mb]],inversion CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:116862650 7:140794467 CAPZA2--BRAF BS_HX0S30NE ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr7:23.80Mb]],inversion CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:116862650 7:140787584 CAPZA2--BRAF BS_HX0S30NE ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:23.80Mb]],inversion CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:116862650 7:140800481 CAPZA2--BRAF BS_HX0S30NE STARFUSION frameshift 22 0 NA [INTRACHROMOSOMAL[chr7:23.80Mb]] CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:28180463 7:29742147 JAZF1--DPY19L2P3 BS_HX0S30NE ARRIBA frameshift 24 3 high [INTRACHROMOSOMAL[chr7:1.47Mb]],inversion JAZF1 NA DPY19L2P3 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:28180463 7:29742147 JAZF1--DPY19L2P3 BS_HX0S30NE STARFUSION other 24 3 NA [INTRACHROMOSOMAL[chr7:1.47Mb]] JAZF1 NA DPY19L2P3 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_HX0S30NE ARRIBA other 4 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:130070809 7:130508659 KLHDC10--COPG2 BS_HX0S30NE ARRIBA in-frame 16 2 high [INTRACHROMOSOMAL[chr7:0.37Mb]],inversion KLHDC10 NA COPG2 NA NA NA NA NA NA +7:130097007 7:130508659 KLHDC10--COPG2 BS_HX0S30NE ARRIBA in-frame 4 2 high [INTRACHROMOSOMAL[chr7:0.37Mb]],inversion KLHDC10 NA COPG2 NA NA NA NA NA NA +7:130070809 7:130508659 KLHDC10--COPG2 BS_HX0S30NE STARFUSION in-frame 16 2 NA [INTRACHROMOSOMAL[chr7:0.37Mb]] KLHDC10 NA COPG2 NA NA NA NA NA NA +7:105038199 7:96405074 KMT2E--RNU7-188P(27154)/SEM1(76552) BS_HX0S30NE ARRIBA other 6 1 high [],duplication KMT2E NA RNU7-188P SEM1 NA NA NA NA NA +7:105014535 7:96497558 KMT2E--SEM1 BS_HX0S30NE ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:8.30Mb]],duplication/5'-5' KMT2E NA SEM1 NA NA NA NA NA NA +7:98107280 7:96296951 LMTK2--SLC25A13 BS_HX0S30NE ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr7:1.78Mb]],inversion LMTK2 NA SLC25A13 NA Kinase NA NA NA NA +7:96450329 7:105038126 RNU7-188P(72409)/SEM1(31297)--KMT2E BS_HX0S30NE ARRIBA other 1 0 low [],deletion RNU7-188P SEM1 KMT2E NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_HX0S30NE ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:66690316 1:66677004 SGIP1--SGIP1 BS_HX0S30NE ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SGIP1 NA SGIP1 NA NA NA NA NA NA +7:127904819 7:104353468 SND1--LHFPL3 BS_HX0S30NE ARRIBA frameshift 14 1 high [INTRACHROMOSOMAL[chr7:22.74Mb]],inversion/3'-3' SND1 NA LHFPL3 NA CosmicCensus NA NA NA NA +7:27769834 7:140787584 TAX1BP1--BRAF BS_HX0S30NE ARRIBA in-frame 13 1 high [INTRACHROMOSOMAL[chr7:112.87Mb]],inversion TAX1BP1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138514473 7:140801883 TRIM24--BRAF BS_HX0S30NE ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr7:2.13Mb]],deletion/5'-5' TRIM24 NA BRAF NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138538803 7:140801560 TRIM24--BRAF BS_HX0S30NE ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:2.13Mb]],inversion TRIM24 NA BRAF NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138504408 7:140927071 TRIM24--BRAF(2307)/AC006006.1(7796) BS_HX0S30NE ARRIBA frameshift 5 1 medium [],deletion TRIM24 NA BRAF AC006006.1 TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:16754030 7:21477079 TSPAN13--SP4 BS_HX0S30NE ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr7:4.64Mb]],deletion TSPAN13 NA SP4 NA TumorSuppressorGene TranscriptionFactor NA NA NA +6:52995910 14:49862664 7SK--RN7SL2 BS_HZ707C55 STARFUSION other 4 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_HZ707C55 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_HZ707C55 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +12:45476675 12:45519153 AC063924.1(31237)/AC079950.1(5196)--AC079950.1 BS_HZ707C55 ARRIBA other 4 3 high [],duplication AC063924.1 AC079950.1 AC079950.1 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_HZ707C55 ARRIBA other 8 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_HZ707C55 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +21:15006624 11:62728163 AF127577.4--TTC9C BS_HZ707C55 ARRIBA other 2 0 low [],translocation/5'-5' AF127577.4 NA TTC9C NA NA NA NA NA NA +1:111353565 10:100276457 CHIAP3--BLOC1S2 BS_HZ707C55 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr1--chr10]],translocation CHIAP3 NA BLOC1S2 NA NA NA NA NA NA +15:36817177 15:36862121 CSNK1A1P1--U3(9262)/AC018563.1(14258) BS_HZ707C55 ARRIBA other 2 0 low [],duplication CSNK1A1P1 NA U3 AC018563.1 NA NA NA NA NA +20:54610523 20:54554933 DOK5--DOK5 BS_HZ707C55 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA +10:5685175 12:45519153 FAM208B--AC079950.1 BS_HZ707C55 ARRIBA other 20 1 high [INTERCHROMOSOMAL[chr10--chr12]],translocation FAM208B NA AC079950.1 NA NA NA NA NA NA +10:5692918 12:45519153 FAM208B--AC079950.1 BS_HZ707C55 ARRIBA other 2 1 high [INTERCHROMOSOMAL[chr10--chr12]],translocation FAM208B NA AC079950.1 NA NA NA NA NA NA +10:5685175 12:45519153 FAM208B--AC079950.1 BS_HZ707C55 STARFUSION other 20 2 NA [INTERCHROMOSOMAL[chr10--chr12]] FAM208B NA AC079950.1 NA NA NA NA NA NA +10:125896655 10:12666736 FANK1--CAMK1D BS_HZ707C55 ARRIBA frameshift 17 0 high [INTRACHROMOSOMAL[chr10:113.06Mb]],duplication FANK1 NA CAMK1D NA NA Kinase, Kinase NA NA NA +10:125896655 10:12666736 FANK1--CAMK1D BS_HZ707C55 STARFUSION frameshift 17 0 NA [INTRACHROMOSOMAL[chr10:113.06Mb]] FANK1 NA CAMK1D NA NA Kinase, Kinase NA NA NA +4:161455004 4:161500134 FSTL5--FSTL5 BS_HZ707C55 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_HZ707C55 STARFUSION other 4 10 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +4:93238490 4:93207404 GRID2--GRID2 BS_HZ707C55 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +4:93626438 3:41932007 GRID2--ULK4 BS_HZ707C55 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr4--chr3]],translocation GRID2 NA ULK4 NA NA Kinase, Kinase NA NA NA +4:93515411 3:41919818 GRID2--ULK4 BS_HZ707C55 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr4--chr3]],translocation GRID2 NA ULK4 NA NA Kinase, Kinase NA NA NA +5:3531753 5:3566558 LINC01019--LINC01019(30464)/IRX1(29496) BS_HZ707C55 ARRIBA other 3 0 medium [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA +3:153927261 3:154030379 LINC02006--ARHGEF26-AS1 BS_HZ707C55 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr3:0.04Mb],LOCAL_REARRANGEMENT:-:[44215]],duplication LINC02006 NA ARHGEF26-AS1 NA NA NA NA NA NA +3:154004631 3:154030379 LINC02006(24445)/U8(2736)--ARHGEF26-AS1 BS_HZ707C55 ARRIBA other 2 0 medium [],duplication LINC02006 U8 ARHGEF26-AS1 NA NA NA NA NA NA +12:25503738 12:25549546 LMNTD1--LMNTD1 BS_HZ707C55 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +6:54202233 6:54832548 MLIP--RNU6-1023P(46056)/AL512363.1(7570) BS_HZ707C55 ARRIBA frameshift 2 0 medium [],deletion MLIP NA RNU6-1023P AL512363.1 NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_HZ707C55 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +21:15006624 11:62728163 NRIP1--TTC9C BS_HZ707C55 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr21--chr11]],translocation/5'-5' NRIP1 NA TTC9C NA Oncogene NA NA NA NA +12:80472251 12:80420753 PTPRQ--PTPRQ BS_HZ707C55 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRQ NA PTPRQ NA NA NA NA NA NA +12:106750793 12:106686884 RFX4--RFX4 BS_HZ707C55 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_HZ707C55 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:41907845 4:93084995 ULK4--GRID2 BS_HZ707C55 ARRIBA frameshift 6 1 high [INTERCHROMOSOMAL[chr3--chr4]],translocation ULK4 NA GRID2 NA Kinase, Kinase NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_HZ707C55 ARRIBA frameshift 17 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_HZE3KYZ1 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_HZE3KYZ1 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_HZE3KYZ1 ARRIBA other 2 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +8:144605535 8:143840229 ARHGAP39--NRBP2 BS_HZE3KYZ1 ARRIBA frameshift 20 0 high [INTRACHROMOSOMAL[chr8:0.69Mb]],deletion ARHGAP39 NA NRBP2 NA NA Kinase, Kinase NA NA NA +8:144605535 8:143840229 ARHGAP39--NRBP2 BS_HZE3KYZ1 STARFUSION frameshift 21 0 NA [INTRACHROMOSOMAL[chr8:0.69Mb]] ARHGAP39 NA NRBP2 NA NA Kinase, Kinase NA NA NA +8:84529577 8:118439961 RALYL--SAMD12 BS_HZE3KYZ1 ARRIBA frameshift 32 0 high [INTRACHROMOSOMAL[chr8:33.27Mb]],inversion RALYL NA SAMD12 NA NA NA NA NA NA +8:84529577 8:118379700 RALYL--SAMD12 BS_HZE3KYZ1 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr8:33.27Mb]],inversion RALYL NA SAMD12 NA NA NA NA NA NA +8:84529577 8:118439961 RALYL--SAMD12 BS_HZE3KYZ1 STARFUSION frameshift 34 0 NA [INTRACHROMOSOMAL[chr8:33.27Mb]] RALYL NA SAMD12 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_HZE3KYZ1 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:118379560 8:122707655 SAMD12--AC100872.1(4232)/CDK5P1(61619) BS_HZE3KYZ1 ARRIBA frameshift 5 0 high [],inversion SAMD12 NA AC100872.1 CDK5P1 NA NA NA NA NA +8:118375618 8:122652570 SAMD12--AC108136.1(162755)/LINC01151(17815) BS_HZE3KYZ1 ARRIBA other 9 0 medium [],inversion SAMD12 NA AC108136.1 LINC01151 NA NA NA NA NA +8:143475398 8:111617229 ZC3H3--LINC02237(74256)/AC022360.1(4229) BS_HZE3KYZ1 ARRIBA frameshift 3 0 medium [],inversion ZC3H3 NA LINC02237 AC022360.1 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_HZRM07TW ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_HZRM07TW ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:73738284 8:101262382 AC022826.2--AP001330.2 BS_HZRM07TW STARFUSION other 31 6 NA [INTRACHROMOSOMAL[chr8:27.38Mb]] AC022826.2 NA AP001330.2 NA NA NA NA NA NA +8:73738284 8:101240290 AC022826.2--AP001330.3(15717)/AP001330.2(21251) BS_HZRM07TW ARRIBA other 3 0 medium [],duplication AC022826.2 NA AP001330.3 AP001330.2 NA NA NA NA NA +8:72973054 8:140925749 AC022893.2(22609)/TERF1(35810)--PTK2 BS_HZRM07TW ARRIBA other 1 0 low [],duplication AC022893.2 TERF1 PTK2 NA NA Kinase TranscriptionFactor NA NA +8:140572812 8:143840229 AGO2--NRBP2 BS_HZRM07TW ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr8:3.20Mb]],duplication AGO2 NA NRBP2 NA NA Kinase, Kinase NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_HZRM07TW ARRIBA other 6 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +8:130358017 8:46906407 ASAP1--AC091163.3(34362)/AC091163.1(16154) BS_HZRM07TW ARRIBA frameshift 112 8 high [],inversion ASAP1 NA AC091163.3 AC091163.1 NA NA NA NA NA +8:130443460 8:141254629 ASAP1--SLC45A4 BS_HZRM07TW ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr8:10.76Mb]],duplication ASAP1 NA SLC45A4 NA NA NA NA NA NA +8:130443460 8:141221765 ASAP1--SLC45A4 BS_HZRM07TW ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:10.76Mb]],duplication ASAP1 NA SLC45A4 NA NA NA NA NA NA +8:130443460 8:141219829 ASAP1--SLC45A4 BS_HZRM07TW ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:10.76Mb]],duplication ASAP1 NA SLC45A4 NA NA NA NA NA NA +8:22201928 8:3187829 BMP1--CSMD1 BS_HZRM07TW ARRIBA frameshift 4 2 high [INTRACHROMOSOMAL[chr8:17.17Mb]],duplication/5'-5' BMP1 NA CSMD1 NA NA TumorSuppressorGene NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_HZRM07TW ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_HZRM07TW ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_HZRM07TW ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_HZRM07TW ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +8:67118821 8:125399697 CSPP1--NSMCE2(32577)/TRIB1(30624) BS_HZRM07TW ARRIBA frameshift 6 0 high [],deletion CSPP1 NA NSMCE2 TRIB1 NA NA NA Kinase NA +8:119929938 8:125622824 DEPTOR--AC091114.1(81451)/AC016074.1(126231) BS_HZRM07TW ARRIBA frameshift 2 0 high [],deletion DEPTOR NA AC091114.1 AC016074.1 NA NA NA NA NA +8:13132944 8:109296569 DLC1--NUDCD1 BS_HZRM07TW ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr8:95.64Mb]],duplication DLC1 NA NUDCD1 NA TumorSuppressorGene, Oncogene NA NA NA NA +6:64902113 6:64912743 EYS--EYS BS_HZRM07TW ARRIBA in-frame 10 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +8:58075623 8:4282282 FAM110B--CSMD1 BS_HZRM07TW ARRIBA other 18 0 high [INTRACHROMOSOMAL[chr8:53.00Mb]],duplication/5'-5' FAM110B NA CSMD1 NA NA TumorSuppressorGene NA NA NA +8:75490208 8:81070170 HNF4G--PAG1 BS_HZRM07TW ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr8:5.40Mb]],inversion HNF4G NA PAG1 NA TranscriptionFactor NA NA NA NA +8:75407964 8:81030089 HNF4G--PAG1 BS_HZRM07TW ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:5.40Mb]],inversion HNF4G NA PAG1 NA TranscriptionFactor NA NA NA NA +8:42930172 8:140514369 HOOK3--CHRAC1 BS_HZRM07TW ARRIBA in-frame 3 2 high [INTRACHROMOSOMAL[chr8:97.48Mb]],deletion HOOK3 NA CHRAC1 NA CosmicCensus, Oncogene NA NA NA NA +8:42925629 8:140514369 HOOK3--CHRAC1 BS_HZRM07TW ARRIBA in-frame 1 1 high [INTRACHROMOSOMAL[chr8:97.48Mb]],deletion HOOK3 NA CHRAC1 NA CosmicCensus, Oncogene NA NA NA NA +8:54100908 8:49822745 LYPLA1--AC113145.1(1801)/AC023762.1(84118) BS_HZRM07TW ARRIBA frameshift 4 0 high [],inversion LYPLA1 NA AC113145.1 AC023762.1 NA NA NA NA NA +8:54100908 8:49812375 LYPLA1--PSAT1P1(71054)/AC113145.1(5211) BS_HZRM07TW ARRIBA frameshift 17 1 high [],inversion LYPLA1 NA PSAT1P1 AC113145.1 NA NA NA NA NA +8:88197158 8:13922767 MMP16--AC022690.1(12987)/AC023538.1(99920) BS_HZRM07TW ARRIBA frameshift 3 0 medium [],deletion MMP16 NA AC022690.1 AC023538.1 NA NA NA NA NA +8:88197158 8:13892949 MMP16--AC022690.2(43840)/AC022690.1(16282) BS_HZRM07TW ARRIBA frameshift 3 0 medium [],deletion MMP16 NA AC022690.2 AC022690.1 NA NA NA NA NA +8:88197158 8:13834464 MMP16--AC022880.1(91683)/AC022690.2(9637) BS_HZRM07TW ARRIBA frameshift 9 1 high [],deletion MMP16 NA AC022880.1 AC022690.2 NA NA NA NA NA +8:88197158 8:47244291 MMP16--IGLV8OR8-1(41394)/SPIDR(16284) BS_HZRM07TW ARRIBA frameshift 7 0 high [],deletion MMP16 NA IGLV8OR8-1 SPIDR NA NA NA NA NA +8:10245223 8:86398342 MSRA--WWP1 BS_HZRM07TW ARRIBA in-frame 6 3 high [INTRACHROMOSOMAL[chr8:75.91Mb]],deletion MSRA NA WWP1 NA NA Oncogene NA NA NA +8:10245223 8:86402019 MSRA--WWP1 BS_HZRM07TW ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr8:75.91Mb]],deletion MSRA NA WWP1 NA NA Oncogene NA NA NA +8:125399948 8:67105905 NSMCE2(32828)/TRIB1(30373)--CSPP1 BS_HZRM07TW ARRIBA other 3 0 high [],duplication NSMCE2 TRIB1 CSPP1 NA NA NA Kinase NA NA +8:81111591 8:21448506 PAG1--AC021355.1(139057)/GFRA2(241897) BS_HZRM07TW ARRIBA other 6 0 high [],deletion PAG1 NA AC021355.1 GFRA2 NA NA NA NA NA +8:81111591 8:21059935 PAG1--AC103719.1(30877)/AC021613.1(70055) BS_HZRM07TW ARRIBA other 2 0 medium [],deletion PAG1 NA AC103719.1 AC021613.1 NA NA NA NA NA +8:81029996 8:75416464 PAG1--HNF4G BS_HZRM07TW ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:5.40Mb]],inversion PAG1 NA HNF4G NA NA TranscriptionFactor NA NA NA +8:140735251 8:72976575 PTK2--AC022893.2(26130)/TERF1(32289) BS_HZRM07TW ARRIBA frameshift 14 3 high [],deletion PTK2 NA AC022893.2 TERF1 Kinase NA NA TranscriptionFactor NA +19:5340664 19:5047476 PTPRS--KDM4B BS_HZRM07TW ARRIBA other 2 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_INVERSION:-:+:[4900]],inversion PTPRS NA KDM4B NA NA NA NA NA NA +19:5340664 19:5110622 PTPRS--KDM4B BS_HZRM07TW ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_INVERSION:-:+:[4900]],inversion PTPRS NA KDM4B NA NA NA NA NA NA +8:127890998 8:83530086 PVT1--LINC01419(121186)/AC015522.1(382627) BS_HZRM07TW ARRIBA other 33 3 high [],inversion PVT1 NA LINC01419 AC015522.1 Oncogene NA NA NA NA +8:103697296 8:53400299 RIMS2--AC131902.1(4353)/AC022034.4(114871) BS_HZRM07TW ARRIBA frameshift 3 0 high [],duplication RIMS2 NA AC131902.1 AC022034.4 NA NA NA NA NA +9:35657774 14:49586588 RMRP--AL139099.5 BS_HZRM07TW STARFUSION other 5 15 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL139099.5 NA Oncogene NA NA NA NA +9:35657773 14:49586591 RMRP--RN7SL1 BS_HZRM07TW STARFUSION other 5 15 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL1 NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_HZRM07TW ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:118580715 8:93864370 SAMD12--MYL12AP1 BS_HZRM07TW ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr8:24.34Mb]],deletion/5'-5' SAMD12 NA MYL12AP1 NA NA NA NA NA NA +8:118580715 8:93864370 SAMD12--PDP1 BS_HZRM07TW ARRIBA frameshift 14 0 high [INTRACHROMOSOMAL[chr8:24.26Mb]],deletion/5'-5' SAMD12 NA PDP1 NA NA NA NA NA NA +8:73738284 8:101262382 STAU2--AP001330.2 BS_HZRM07TW STARFUSION other 31 6 NA [INTRACHROMOSOMAL[chr8:27.51Mb]] STAU2 NA AP001330.2 NA NA NA NA NA NA +8:73738284 8:101268905 STAU2--AP001330.2(6002)/AP001330.1(18540) BS_HZRM07TW ARRIBA frameshift 2 0 high [],duplication STAU2 NA AP001330.2 AP001330.1 NA NA NA NA NA +8:73738284 8:101240290 STAU2--AP001330.3(15717)/AP001330.2(21251) BS_HZRM07TW ARRIBA frameshift 3 0 medium [],duplication STAU2 NA AP001330.3 AP001330.2 NA NA NA NA NA +19:39471730 12:115363011 SUPT5H--AC078880.2 BS_HZRM07TW ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr19--chr12]],translocation SUPT5H NA AC078880.2 NA NA NA NA NA NA +19:39471730 12:115344577 SUPT5H--AC078880.5(12011)/AC078880.2(18435) BS_HZRM07TW ARRIBA frameshift 22 2 high [],translocation SUPT5H NA AC078880.5 AC078880.2 NA NA NA NA NA +19:39471730 12:115360126 SUPT5H--AC078880.5(27560)/AC078880.2(2886) BS_HZRM07TW ARRIBA frameshift 2 0 medium [],translocation SUPT5H NA AC078880.5 AC078880.2 NA NA NA NA NA +8:23043138 8:111999066 TNFRSF10B--AC022360.2(242240)/RNU4-37P(149676) BS_HZRM07TW ARRIBA frameshift 1 1 high [],duplication TNFRSF10B NA AC022360.2 RNU4-37P TumorSuppressorGene NA NA NA NA +8:23043138 8:112065794 TNFRSF10B--AC022360.2(308968)/RNU4-37P(82948) BS_HZRM07TW ARRIBA frameshift 14 2 high [],duplication TNFRSF10B NA AC022360.2 RNU4-37P TumorSuppressorGene NA NA NA NA +8:9733444 8:101692896 TNKS--NCALD BS_HZRM07TW ARRIBA in-frame 41 2 high [INTRACHROMOSOMAL[chr8:91.90Mb]],inversion TNKS NA NCALD NA NA NA NA NA NA +8:9726720 8:101692896 TNKS--NCALD BS_HZRM07TW ARRIBA in-frame 11 0 high [INTRACHROMOSOMAL[chr8:91.90Mb]],inversion TNKS NA NCALD NA NA NA NA NA NA +8:9731035 8:101692896 TNKS--NCALD BS_HZRM07TW ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr8:91.90Mb]],inversion TNKS NA NCALD NA NA NA NA NA NA +8:9733444 8:101692896 TNKS--NCALD BS_HZRM07TW STARFUSION in-frame 41 3 NA [INTRACHROMOSOMAL[chr8:91.90Mb]] TNKS NA NCALD NA NA NA NA NA NA +8:59118886 8:83842213 TOX--LINC01419(433313)/AC015522.1(70500) BS_HZRM07TW ARRIBA frameshift 7 1 high [],inversion TOX NA LINC01419 AC015522.1 NA NA NA NA NA +8:92916929 8:5181008 TRIQK--RN7SL318P(38301)/AC007718.1(182363) BS_HZRM07TW ARRIBA frameshift 1 0 low [],inversion TRIQK NA RN7SL318P AC007718.1 NA NA NA NA NA +8:92916929 8:5196137 TRIQK--RN7SL318P(53430)/AC007718.1(167234) BS_HZRM07TW ARRIBA frameshift 2 0 medium [],inversion TRIQK NA RN7SL318P AC007718.1 NA NA NA NA NA +8:99577633 8:30065958 VPS13B--SARAF BS_HZRM07TW ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr8:68.93Mb]],duplication/5'-5' VPS13B NA SARAF NA NA NA NA NA NA +8:86381629 8:27765251 WWP1--CCDC25 BS_HZRM07TW ARRIBA in-frame 2 0 high [INTRACHROMOSOMAL[chr8:58.57Mb]],inversion WWP1 NA CCDC25 NA Oncogene NA NA NA NA +8:122781946 8:89609285 ZHX2--AF117829.1 BS_HZRM07TW ARRIBA other 5 3 high [INTRACHROMOSOMAL[chr8:33.02Mb]],duplication/5'-5' ZHX2 NA AF117829.1 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA +8:122781946 8:89609285 ZHX2--KRT8P4(194214)/AF117829.1(124) BS_HZRM07TW ARRIBA other 2 0 medium [],duplication ZHX2 NA KRT8P4 AF117829.1 TumorSuppressorGene, TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_J1AB8PMA ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_J1AB8PMA ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_J1AB8PMA ARRIBA other 4 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +3:37481607 3:37298833 ITGA9--GOLGA4 BS_J1AB8PMA ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr3:0.09Mb],LOCAL_REARRANGEMENT:+:[85364]],duplication ITGA9 NA GOLGA4 NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_J1AB8PMA ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995913 14:49862667 7SK--RN7SL2 BS_J483EMFP STARFUSION other 9 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995864 14:49862666 7SK--RN7SL2 BS_J483EMFP STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995923 14:49862666 7SK--RN7SL2 BS_J483EMFP STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_J483EMFP ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_J483EMFP ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_J483EMFP STARFUSION other 15 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +14:49586868 6:52995634 AL139099.5--7SK BS_J483EMFP STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +4:40900224 12:71663344 APBB2--ZFC3H1 BS_J483EMFP ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr4--chr12]],translocation APBB2 NA ZFC3H1 NA NA NA NA NA NA +12:13753317 12:13753915 GRIN2B--GRIN2B BS_J483EMFP ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.54Mb]],duplication/non-canonical_splicing GRIN2B NA GRIN2B NA NA NA NA NA NA +2:1839149 2:1892287 MYT1L--MYT1L BS_J483EMFP ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +15:69677640 15:69548354 PCAT29--DRAIC BS_J483EMFP ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +14:49586868 6:52995634 RN7SL1--7SK BS_J483EMFP STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_J483EMFP ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_J483EMFP ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +3:41514940 3:41935940 ULK4--ULK4 BS_J483EMFP ARRIBA other 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr3:0.72Mb]],duplication ULK4 NA ULK4 NA Kinase, Kinase Kinase, Kinase NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_J60G8DMK ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_J60G8DMK ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_J60G8DMK ARRIBA other 17 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +1:48055196 1:48011530 AL356289.1--TRABD2B(14635)/AL356289.1(39129) BS_J60G8DMK ARRIBA other 5 0 high [],duplication AL356289.1 NA TRABD2B AL356289.1 NA NA NA NA NA +9:136977692 17:3685580 AL807752.7--P2RX5 BS_J60G8DMK ARRIBA frameshift 3 0 low [INTERCHROMOSOMAL[chr9--chr17]],translocation AL807752.7 NA P2RX5 NA NA NA NA NA NA +6:64590223 6:64593309 EYS--EYS BS_J60G8DMK ARRIBA frameshift 49 4 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_J60G8DMK ARRIBA other 17 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +10:94171496 10:94030683 PLCE1--PIPSL(69143)/PLCE1(129) BS_J60G8DMK ARRIBA frameshift 3 0 medium [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +9:136977692 17:3685580 PTGDS--P2RX5 BS_J60G8DMK ARRIBA frameshift 3 0 low [INTERCHROMOSOMAL[chr9--chr17]],translocation PTGDS NA P2RX5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_J60G8DMK ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_J6VKB1VE ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_J6VKB1VE ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:131945459 10:131451347 PPP2R2D--TCERG1L(139626)/LINC01164(321051) BS_J6VKB1VE ARRIBA frameshift 8 2 high [],duplication PPP2R2D NA TCERG1L LINC01164 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_J6VKB1VE ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:63763524 11:34775164 C11orf95--AL359999.1(31965)/APIP(77930) BS_J70GK8SM ARRIBA frameshift 11 2 medium [],deletion C11orf95 NA AL359999.1 APIP NA NA NA NA NA +11:63763520 11:96093517 C11orf95--MAML2 BS_J70GK8SM ARRIBA in-frame 24 7 high [INTRACHROMOSOMAL[chr11:32.21Mb]],duplication C11orf95 NA MAML2 NA NA CosmicCensus, Oncogene NA NA NA +11:63763520 11:96093517 C11orf95--MAML2 BS_J70GK8SM STARFUSION in-frame 24 7 NA [INTRACHROMOSOMAL[chr11:32.21Mb]] C11orf95 NA MAML2 NA NA CosmicCensus, Oncogene NA NA NA +11:130236793 22:28030366 ZBTB44--TTC28 BS_J70GK8SM ARRIBA in-frame 4 1 high [INTERCHROMOSOMAL[chr11--chr22]],translocation ZBTB44 NA TTC28 NA TranscriptionFactor NA NA NA NA +11:130237010 22:28030366 ZBTB44--TTC28 BS_J70GK8SM ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr11--chr22]],translocation ZBTB44 NA TTC28 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_J71N7D09 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_J71N7D09 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_J71N7D09 ARRIBA in-frame 37 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_J71N7D09 ARRIBA other 15 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_J71N7D09 ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +9:23762006 9:23765099 ELAVL2--ELAVL2 BS_J71N7D09 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_J71N7D09 ARRIBA frameshift 23 2 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_J71N7D09 ARRIBA in-frame 72 8 high [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_J71N7D09 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +6:24568781 6:24583702 KIAA0319--KIAA0319 BS_J71N7D09 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing KIAA0319 NA KIAA0319 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_J71N7D09 ARRIBA frameshift 10 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_J71N7D09 ARRIBA other 6 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +8:124555742 8:124558832 MTSS1--MTSS1 BS_J71N7D09 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +9:14306989 9:14307520 NFIB--NFIB BS_J71N7D09 ARRIBA frameshift 28 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.32Mb]],duplication/non-canonical_splicing NFIB NA NFIB NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +18:34093465 18:34112697 NOL4--NOL4 BS_J71N7D09 ARRIBA frameshift 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr18:0.37Mb]],duplication NOL4 NA NOL4 NA NA NA NA NA NA +15:76009200 15:76052983 NRG4--NRG4 BS_J71N7D09 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +7:82902651 7:82916873 PCLO--PCLO BS_J71N7D09 ARRIBA frameshift 15 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.41Mb]],duplication/non-canonical_splicing PCLO NA PCLO NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_J71N7D09 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +14:102677304 9:111574842 RCOR1--PTGR1 BS_J71N7D09 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr14--chr9]],translocation/3'-3' RCOR1 NA PTGR1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_J71N7D09 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_J8G4SH4Z ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_J8G4SH4Z ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_J8G4SH4Z ARRIBA other 28 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_J8G4SH4Z ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +5:134846212 5:134738699 C5orf24--CAMLG BS_J8G4SH4Z ARRIBA other 27 3 high [INTRACHROMOSOMAL[chr5:0.09Mb],LOCAL_REARRANGEMENT:+:[93520]],duplication C5orf24 NA CAMLG NA NA NA NA NA NA +5:134846212 5:134741063 C5orf24--CAMLG BS_J8G4SH4Z ARRIBA other 17 2 high [INTRACHROMOSOMAL[chr5:0.09Mb],LOCAL_REARRANGEMENT:+:[93520]],duplication C5orf24 NA CAMLG NA NA NA NA NA NA +5:134846212 5:134750759 C5orf24--CAMLG BS_J8G4SH4Z ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.09Mb],LOCAL_REARRANGEMENT:+:[93520]],duplication C5orf24 NA CAMLG NA NA NA NA NA NA +5:134846212 5:134738699 C5orf24--CAMLG BS_J8G4SH4Z STARFUSION other 27 3 NA [INTRACHROMOSOMAL[chr5:0.09Mb],LOCAL_REARRANGEMENT:+:[93520]] C5orf24 NA CAMLG NA NA NA NA NA NA +5:134846212 5:134741063 C5orf24--CAMLG BS_J8G4SH4Z STARFUSION other 17 3 NA [INTRACHROMOSOMAL[chr5:0.09Mb],LOCAL_REARRANGEMENT:+:[93520]] C5orf24 NA CAMLG NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_J8G4SH4Z ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_J8G4SH4Z ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_J8G4SH4Z ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +6:65490594 6:65495993 EYS--EYS BS_J8G4SH4Z ARRIBA frameshift 19 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_J8G4SH4Z ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +X:70333689 X:70329405 KIF4A--KIF4A BS_J8G4SH4Z ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.13Mb]],duplication/non-canonical_splicing KIF4A NA KIF4A NA NA NA NA NA NA +5:135671747 5:135629237 LINC01959(17812)/AC011431.1(70715)--AC034206.1 BS_J8G4SH4Z ARRIBA other 5 0 medium [],duplication LINC01959 AC011431.1 AC034206.1 NA NA NA NA NA NA +15:21617244 15:21595606 LINC02203--LINC02203 BS_J8G4SH4Z ARRIBA other 3 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.10Mb]],duplication/non-canonical_splicing LINC02203 NA LINC02203 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_J8G4SH4Z ARRIBA other 28 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_J8G4SH4Z ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:1593113 5:1599827 SDHAP3--AC026412.1 BS_J8G4SH4Z ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[4300]],duplication SDHAP3 NA AC026412.1 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_J8G4SH4Z ARRIBA frameshift 34 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:114981512 1:114923449 SYCP1--SYCP1 BS_J8G4SH4Z ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_J8G4SH4Z ARRIBA other 9 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_J8VX4D17 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_J8VX4D17 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_J8VX4D17 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +3:57357176 3:57363786 DNAH12--DNAH12 BS_J8VX4D17 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +4:161455004 4:161500134 FSTL5--FSTL5 BS_J8VX4D17 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_J8VX4D17 ARRIBA other 11 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +11:65499357 6:56896144 MALAT1--DST BS_J8VX4D17 ARRIBA other 6 0 low [INTERCHROMOSOMAL[chr11--chr6]],translocation MALAT1 NA DST NA CosmicCensus, Oncogene Oncogene NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_J8VX4D17 ARRIBA frameshift 8 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +14:49862572 14:20343400 RN7SL2--AL355075.4 BS_J8VX4D17 STARFUSION other 7 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862561 14:20343401 RN7SL2--AL355075.4 BS_J8VX4D17 STARFUSION other 7 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862572 14:20343239 RN7SL2--AL355075.4 BS_J8VX4D17 STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862573 14:20343314 RN7SL2--AL355075.4 BS_J8VX4D17 STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862573 14:20343401 RN7SL2--RPPH1 BS_J8VX4D17 STARFUSION other 9 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862561 14:20343401 RN7SL2--RPPH1 BS_J8VX4D17 STARFUSION other 7 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862575 14:20343238 RN7SL2--RPPH1 BS_J8VX4D17 STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862572 14:20343314 RN7SL2--RPPH1 BS_J8VX4D17 STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862573 10:17229305 RN7SL2--VIM BS_J8VX4D17 STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr14--chr10]] RN7SL2 NA VIM NA NA TumorSuppressorGene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_J8VX4D17 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:127048116 2:198929482 BIN1--AC020718.1 BS_JAEM78XS ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr2:71.78Mb]],inversion/5'-5' BIN1 NA AC020718.1 NA TumorSuppressorGene, Oncogene NA NA NA NA +10:101479457 10:125544983 BTRC--RPS27P18(71051)/TEX36-AS1(29388) BS_JAEM78XS ARRIBA frameshift 2 0 medium [],inversion BTRC NA RPS27P18 TEX36-AS1 Oncogene NA NA NA NA +10:101479457 10:125576874 BTRC--TEX36 BS_JAEM78XS ARRIBA in-frame 14 0 high [INTRACHROMOSOMAL[chr10:24.02Mb]],inversion BTRC NA TEX36 NA Oncogene NA NA NA NA +10:101479457 10:125576874 BTRC--TEX36 BS_JAEM78XS STARFUSION in-frame 16 1 NA [INTRACHROMOSOMAL[chr10:24.02Mb]] BTRC NA TEX36 NA Oncogene NA NA NA NA +6:64590223 6:64593309 EYS--EYS BS_JAEM78XS ARRIBA frameshift 21 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +2:85549722 6:88685954 GGCX--RNGTT BS_JAEM78XS ARRIBA other 5 1 medium [INTERCHROMOSOMAL[chr2--chr6]],translocation/5'-5' GGCX NA RNGTT NA NA NA NA NA NA +19:15186878 17:19572780 NOTCH3--SLC47A1 BS_JAEM78XS ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr19--chr17]],translocation NOTCH3 NA SLC47A1 NA TumorSuppressorGene, Oncogene NA NA NA NA +5:102755348 21:44851627 PAM--PTTG1IP BS_JAEM78XS ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr5--chr21]],translocation PAM NA PTTG1IP NA NA Oncogene NA NA NA +4:94640450 4:109648484 PDLIM5--MCUB BS_JAEM78XS ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:14.89Mb]],deletion PDLIM5 NA MCUB NA NA NA NA NA NA +9:35657770 6:52995745 RMRP--RN7SK BS_JAEM78XS STARFUSION other 4 6 NA [INTERCHROMOSOMAL[chr9--chr6]] RMRP NA RN7SK NA Oncogene NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_JAEM78XS ARRIBA other 9 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +4:95182897 4:105938301 UNC5C--NPNT BS_JAEM78XS ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr4:10.35Mb]],inversion UNC5C NA NPNT NA TumorSuppressorGene NA NA NA NA +14:49586795 6:158438004 AL139099.5--RN7SL173P BS_JBGZ7HHZ STARFUSION other 14 0 NA [INTERCHROMOSOMAL[chr14--chr6]] AL139099.5 NA RN7SL173P NA NA NA NA NA NA +6:52995908 14:49862668 RN7SK--RN7SL2 BS_JBGZ7HHZ STARFUSION other 5 8 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +15:64155883 12:42362009 SNX22--PPHLN1 BS_JBGZ7HHZ ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr15--chr12]],translocation SNX22 NA PPHLN1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JCPKYHKY ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JCPKYHKY ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_JCPKYHKY ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_JCPKYHKY STARFUSION other 14 18 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_JCPKYHKY ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:65260600 5:65554946 ADAMTS6--CENPK BS_JFB984RG ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[35846]],duplication ADAMTS6 NA CENPK NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_JFB984RG ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_JFB984RG ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100586185 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_JFB984RG ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_JFB984RG ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100586185 9:100561397 CAVIN4--TMEFF1 BS_JFB984RG ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +3:1352451 3:1278413 CNTN6--CNTN6 BS_JFB984RG ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.31Mb]],duplication/non-canonical_splicing CNTN6 NA CNTN6 NA Oncogene Oncogene NA NA NA +6:65490594 6:65495993 EYS--EYS BS_JFB984RG ARRIBA frameshift 26 2 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +4:103656194 4:103658403 TACR3--TACR3 BS_JFB984RG ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA +5:126595007 3:47675588 ALDH7A1--SMARCC1 BS_JFEZA9KE ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr5--chr3]],translocation ALDH7A1 NA SMARCC1 NA NA TumorSuppressorGene NA NA NA +22:29292169 11:128809157 EWSR1--FLI1 BS_JFEZA9KE ARRIBA in-frame 6 2 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +20:28620725 10:27257950 FRG1CP(18061)/FRG1DP(459665)--LRRC37A6P BS_JFEZA9KE ARRIBA other 2 0 medium [],translocation FRG1CP FRG1DP LRRC37A6P NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JFR750KD ARRIBA other 44 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JFR750KD ARRIBA other 44 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:139368484 2:139339254 AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_JFR750KD ARRIBA other 3 1 medium [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA +4:7778762 9:84741892 AFAP1--NTRK2 BS_JFR750KD ARRIBA in-frame 121 28 high [ChimerSeq,INTERCHROMOSOMAL[chr4--chr9]],translocation AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion +4:7778762 9:84744973 AFAP1--NTRK2 BS_JFR750KD ARRIBA in-frame 7 11 medium [ChimerSeq,INTERCHROMOSOMAL[chr4--chr9]],translocation AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion +4:7778762 9:84741892 AFAP1--NTRK2 BS_JFR750KD STARFUSION in-frame 124 28 NA [ChimerSeq,INTERCHROMOSOMAL[chr4--chr9]] AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion +3:178748404 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_JFR750KD ARRIBA other 1 1 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +10:94171496 10:94030683 PLCE1--PIPSL(69143)/PLCE1(129) BS_JFR750KD ARRIBA frameshift 2 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_JFR750KD ARRIBA other 44 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16325965 4:16320065 TAPT1-AS1(5825)/ZEB2P1(34721)--TAPT1-AS1 BS_JFR750KD ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +3:68417420 3:67840022 FAM19A1--SUCLG2-AS1 BS_JG9JZTA9 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:0.06Mb],LOCAL_REARRANGEMENT:+:[56503]],duplication FAM19A1 NA SUCLG2-AS1 NA NA NA NA NA NA +22:20974816 19:46235904 AIFM3--IGFL1(4661)/AC006262.4(13490) BS_JGPR9SR2 ARRIBA frameshift 4 0 high [],translocation AIFM3 NA IGFL1 AC006262.4 NA NA NA NA NA +1:24833178 12:31661841 CLIC4--ETFBKMT BS_JGPR9SR2 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr1--chr12]],translocation/3'-3' CLIC4 NA ETFBKMT NA Oncogene NA NA NA NA +1:23854360 1:23875662 FUCA1--CNR2 BS_JGPR9SR2 ARRIBA frameshift 9 1 high [CCLE,INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:-:[2232]],duplication FUCA1 NA CNR2 NA NA Oncogene NA NA NA +1:23854360 1:23875662 FUCA1--CNR2 BS_JGPR9SR2 STARFUSION other 9 1 NA [CCLE,INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:-:[2232]] FUCA1 NA CNR2 NA NA Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JH29M4KG ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JH29M4KG ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:24535112 5:24537674 CDH10--CDH10 BS_JH29M4KG ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_JH29M4KG ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +3:178801793 3:178966958 KCNMB2-AS1--KCNMB2-AS1(106553)/ZMAT3(50265) BS_JH29M4KG ARRIBA other 1 1 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_JH29M4KG ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_JH29M4KG ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_JH29M4KG ARRIBA other 6 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JHGW42S6 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JHGW42S6 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_JHGW42S6 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +10:26193311 10:26173663 MYO3A--MYO3A BS_JHGW42S6 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.28Mb]],duplication/non-canonical_splicing MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_JHGW42S6 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:103893875 11:104000237 AP002989.1--PDGFD BS_JK0VPG1T ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11915]],duplication AP002989.1 NA PDGFD NA NA NA NA NA NA +11:103893875 11:103927126 AP002989.1--PDGFD BS_JK0VPG1T ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11915]],duplication AP002989.1 NA PDGFD NA NA NA NA NA NA +11:57815500 1:32038552 CTNND1--KHDRBS1 BS_JK0VPG1T ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr11--chr1]],translocation CTNND1 NA KHDRBS1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JKXA3FQC ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JKXA3FQC ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +6:132106916 6:132009857 AL021408.1(7637)/MIR548AJ1(8276)--AL021408.1 BS_JKXA3FQC ARRIBA other 2 1 medium [],duplication AL021408.1 MIR548AJ1 AL021408.1 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_JKXA3FQC ARRIBA other 15 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +7:140834609 7:144601595 BRAF--TPK1 BS_JKXA3FQC ARRIBA frameshift 16 3 high [INTRACHROMOSOMAL[chr7:3.53Mb]],inversion/5'-5' BRAF NA TPK1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA +7:143360040 7:140787584 FAM131B--BRAF BS_JKXA3FQC ARRIBA in-frame 10 1 high [ChimerPub,Cosmic,ChimerKB,INTRACHROMOSOMAL[chr7:2.43Mb]],deletion FAM131B NA BRAF NA CosmicCensus Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_JKXA3FQC ARRIBA other 10 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_JKXA3FQC ARRIBA other 3 1 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +4:53476753 4:53481854 LNX1--LNX1 BS_JKXA3FQC ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.24Mb]],duplication/non-canonical_splicing LNX1 NA LNX1 NA NA NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_JKXA3FQC ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_JKXA3FQC ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:141750384 7:144453663 SSBP1--TPK1 BS_JKXA3FQC ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr7:2.66Mb]],inversion SSBP1 NA TPK1 NA NA Oncogene NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_JKXA3FQC ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JMHG7GCN ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JMHG7GCN ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_JMHG7GCN ARRIBA in-frame 5 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_JMHG7GCN ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:45181082 10:45194254 AL358394.1--AL512324.3 BS_JR5ATB7G ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr10:0.01Mb],LOCAL_REARRANGEMENT:-:[5865]],duplication AL358394.1 NA AL512324.3 NA NA NA NA NA NA +6:34696446 15:22278818 C6orf106--AC025884.1 BS_JR5ATB7G ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr6--chr15]],translocation C6orf106 NA AC025884.1 NA NA NA NA NA NA +6:34696446 15:22282799 C6orf106--AC025884.1 BS_JR5ATB7G ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr6--chr15]],translocation C6orf106 NA AC025884.1 NA NA NA NA NA NA +6:34696446 15:22278818 C6orf106--AC025884.2(19970)/AC025884.1(153) BS_JR5ATB7G ARRIBA frameshift 6 1 high [],translocation C6orf106 NA AC025884.2 AC025884.1 NA NA NA NA NA +4:165379528 4:165294359 CPE--KLHL2 BS_JR5ATB7G ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chr4:0.04Mb],LOCAL_REARRANGEMENT:+:[38038]],duplication CPE NA KLHL2 NA NA NA NA NA NA +11:18407167 2:7040603 LDHA--RNF144A BS_JR5ATB7G ARRIBA other 23 4 medium [INTERCHROMOSOMAL[chr11--chr2]],translocation/3'-3' LDHA NA RNF144A NA NA TumorSuppressorGene NA NA NA +1:39231243 5:1243555 MACF1--SLC6A18 BS_JR5ATB7G ARRIBA in-frame 72 6 high [INTERCHROMOSOMAL[chr1--chr5]],translocation MACF1 NA SLC6A18 NA Oncogene NA NA NA NA +1:39231243 5:1245848 MACF1--SLC6A18 BS_JR5ATB7G ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr1--chr5]],translocation MACF1 NA SLC6A18 NA Oncogene NA NA NA NA +1:39231243 5:1243555 MACF1--SLC6A18 BS_JR5ATB7G STARFUSION in-frame 77 8 NA [INTERCHROMOSOMAL[chr1--chr5]] MACF1 NA SLC6A18 NA Oncogene NA NA NA NA +5:59988488 16:75451839 PDE4D--AC009163.4 BS_JR5ATB7G ARRIBA frameshift 16 1 high [INTERCHROMOSOMAL[chr5--chr16]],translocation PDE4D NA AC009163.4 NA Oncogene NA NA NA NA +5:59988488 16:75451839 PDE4D--AC009163.4 BS_JR5ATB7G STARFUSION frameshift 18 2 NA [INTERCHROMOSOMAL[chr5--chr16]] PDE4D NA AC009163.4 NA Oncogene NA NA NA NA +5:59988488 16:75451839 PDE4D--TMEM170A BS_JR5ATB7G ARRIBA frameshift 18 3 high [INTERCHROMOSOMAL[chr5--chr16]],translocation PDE4D NA TMEM170A NA Oncogene NA NA NA NA +5:59988488 16:75451839 PDE4D--TMEM170A BS_JR5ATB7G STARFUSION frameshift 18 3 NA [INTERCHROMOSOMAL[chr5--chr16]] PDE4D NA TMEM170A NA Oncogene NA NA NA NA +11:46048287 11:94434072 PHF21A--MRE11 BS_JR5ATB7G ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr11:48.29Mb]],inversion/5'-5' PHF21A NA MRE11 NA TranscriptionFactor Oncogene NA NA NA +14:49862571 14:20343401 RN7SL2--AL355075.4 BS_JR5ATB7G STARFUSION other 24 32 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862571 14:20343401 RN7SL2--RPPH1 BS_JR5ATB7G STARFUSION other 24 32 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +9:37903531 9:20071644 SLC25A51--AL591222.3(103650)/AL512635.1(259802) BS_JR5ATB7G ARRIBA other 9 1 high [],inversion SLC25A51 NA AL591222.3 AL512635.1 NA NA NA NA NA +2:84906115 20:58909352 TMSB10--GNAS BS_JR5ATB7G ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr2--chr20]],translocation TMSB10 NA GNAS NA Oncogene CosmicCensus, Oncogene NA NA NA +1:1721596 2:15230622 CDK11A--NBAS BS_JRYJGYC4 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr1--chr2]],translocation/5'-5' CDK11A NA NBAS NA Oncogene, Kinase NA NA NA NA +2:15218773 1:1728238 NBAS--AL031282.1 BS_JRYJGYC4 ARRIBA frameshift 7 0 high [INTERCHROMOSOMAL[chr2--chr1]],translocation NBAS NA AL031282.1 NA NA NA NA NA NA +2:15218773 1:1735817 NBAS--AL031282.1 BS_JRYJGYC4 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr2--chr1]],translocation NBAS NA AL031282.1 NA NA NA NA NA NA +2:15218773 1:1730246 NBAS--AL031282.1 BS_JRYJGYC4 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr2--chr1]],translocation NBAS NA AL031282.1 NA NA NA NA NA NA +2:15218773 1:1728238 NBAS--AL031282.2 BS_JRYJGYC4 ARRIBA frameshift 7 0 high [INTERCHROMOSOMAL[chr2--chr1]],translocation/5'-5' NBAS NA AL031282.2 NA NA NA NA NA NA +2:15218773 1:1728238 NBAS--SLC35E2 BS_JRYJGYC4 ARRIBA frameshift 7 0 high [INTERCHROMOSOMAL[chr2--chr1]],translocation/5'-5' NBAS NA SLC35E2 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_JRYJGYC4 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +19:49331076 19:45155916 SLC6A16(5851)/AC011450.1(541)--NKPD1 BS_JRYJGYC4 ARRIBA other 2 0 high [],deletion SLC6A16 AC011450.1 NKPD1 NA NA NA NA NA NA +1:114510551 1:114840776 TRIM33--NR1H5P BS_JRYJGYC4 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.33Mb]],duplication/5'-5' TRIM33 NA NR1H5P NA CosmicCensus, Oncogene NA NA NA NA +1:114510551 1:114779284 TRIM33--SIKE1 BS_JRYJGYC4 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr1:0.26Mb]],duplication TRIM33 NA SIKE1 NA CosmicCensus, Oncogene NA NA NA NA +1:114510551 1:114899924 TRIM33--SYCP1 BS_JRYJGYC4 ARRIBA frameshift 15 1 high [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.34Mb]],duplication/5'-5' TRIM33 NA SYCP1 NA CosmicCensus, Oncogene NA NA NA NA +18:35344370 18:37253938 ZNF24--CELF4 BS_JRYJGYC4 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr18:1.90Mb]],duplication ZNF24 NA CELF4 NA TranscriptionFactor NA NA NA NA +18:35344370 18:37273163 ZNF24--CELF4 BS_JRYJGYC4 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr18:1.90Mb]],duplication ZNF24 NA CELF4 NA TranscriptionFactor NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_JS95PE0J ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +1:155395459 11:36604911 ASH1L--C11orf74 BS_JS95PE0J ARRIBA frameshift 11 1 high [INTERCHROMOSOMAL[chr1--chr11]],translocation/5'-5' ASH1L NA C11orf74 NA TranscriptionFactor NA NA NA NA +1:155709824 11:36462342 DAP3--PRR5L BS_JS95PE0J ARRIBA frameshift 14 2 high [INTERCHROMOSOMAL[chr1--chr11]],translocation DAP3 NA PRR5L NA NA NA NA NA NA +1:155709824 11:36462342 DAP3--PRR5L BS_JS95PE0J STARFUSION in-frame 14 2 NA [INTERCHROMOSOMAL[chr1--chr11]] DAP3 NA PRR5L NA NA NA NA NA NA +6:52995864 14:49862666 7SK--RN7SL2 BS_JSPR854S STARFUSION other 4 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995852 14:49862691 7SK--RN7SL2 BS_JSPR854S STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995907 14:49862666 7SK--RN7SL2 BS_JSPR854S STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JSPR854S ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JSPR854S ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:20343074 14:49862664 AL355075.4--RN7SL2 BS_JSPR854S STARFUSION other 4 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] AL355075.4 NA RN7SL2 NA NA NA NA NA NA +6:73766154 6:73756643 CD109--CD109 BS_JSPR854S ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.13Mb]],duplication/non-canonical_splicing CD109 NA CD109 NA Oncogene Oncogene NA NA NA +10:73443906 10:11999631 PPP3CB--UPF2 BS_JSPR854S ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:61.39Mb]],inversion/5'-5' PPP3CB NA UPF2 NA NA NA NA NA NA +14:49862557 6:52995629 RN7SL2--RN7SK BS_JSPR854S STARFUSION other 4 14 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL2 NA RN7SK NA NA NA NA NA NA +14:20343074 14:49862664 RPPH1--RN7SL2 BS_JSPR854S STARFUSION other 4 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RPPH1 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_JSPR854S ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:69203043 10:73438420 SUPV3L1--PPP3CB BS_JSPR854S ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr10:4.23Mb]],inversion SUPV3L1 NA PPP3CB NA NA NA NA NA NA +10:69203043 10:73439901 SUPV3L1--PPP3CB BS_JSPR854S ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:4.23Mb]],inversion SUPV3L1 NA PPP3CB NA NA NA NA NA NA +6:52995910 14:49862664 7SK--RN7SL2 BS_JT82QGXF STARFUSION other 4 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995787 14:49862679 7SK--RN7SL2 BS_JT82QGXF STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JT82QGXF ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JT82QGXF ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_JT82QGXF ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +X:148662768 7:127844324 AFF2--SND1 BS_JT82QGXF ARRIBA in-frame 10 1 high [INTERCHROMOSOMAL[chrX--chr7]],translocation AFF2 NA SND1 NA NA CosmicCensus NA NA NA +12:178248 1:24857879 IQSEC3--CLIC4(13555)/RUNX3(41632) BS_JT82QGXF ARRIBA other 2 0 low [],translocation IQSEC3 NA CLIC4 RUNX3 NA Oncogene NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA +9:5072626 9:5021963 JAK2--JAK2 BS_JT82QGXF ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_JT82QGXF ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +14:49862562 6:52995631 RN7SL2--7SK BS_JT82QGXF STARFUSION other 5 11 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_JT82QGXF ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:127904819 X:148809876 SND1--AFF2 BS_JT82QGXF ARRIBA in-frame 3 1 high [INTERCHROMOSOMAL[chr7--chrX]],translocation SND1 NA AFF2 NA CosmicCensus NA NA NA NA +2:66133944 2:66072504 AC007389.1(49305)/AC118345.1(101433)--AC007389.1 BS_JTMXAMB7 ARRIBA other 3 10 high [],duplication AC007389.1 AC118345.1 AC007389.1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JTMXAMB7 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JTMXAMB7 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:34203308 3:34669211 AC123023.1--LINC01811(106334)/FECHP1(203430) BS_JTMXAMB7 ARRIBA other 2 0 medium [],deletion AC123023.1 NA LINC01811 FECHP1 NA NA NA NA NA +5:77043643 5:79130935 AGGF1--BHMT BS_JTMXAMB7 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr5:2.05Mb]],inversion/3'-3' AGGF1 NA BHMT NA NA NA NA NA NA +15:89871475 15:89910819 AP3S2--ARPIN BS_JTMXAMB7 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_REARRANGEMENT:-:[368]],duplication AP3S2 NA ARPIN NA NA NA NA NA NA +17:43090944 17:43094860 BRCA1--BRCA1 BS_JTMXAMB7 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing BRCA1 NA BRCA1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_JTMXAMB7 ARRIBA in-frame 20 2 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +3:113395750 3:113494142 CFAP44--SPICE1 BS_JTMXAMB7 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA +8:43179382 5:79130935 HGSNAT--BHMT BS_JTMXAMB7 ARRIBA other 1 2 high [INTERCHROMOSOMAL[chr8--chr5]],translocation/3'-3' HGSNAT NA BHMT NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_JTMXAMB7 ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +14:59475869 14:59565275 L3HYPDH--CCDC175 BS_JTMXAMB7 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +5:152270360 5:151946639 LINC01933--GLRA1(21797)/LINC01933(2932) BS_JTMXAMB7 ARRIBA other 1 3 medium [],duplication LINC01933 NA GLRA1 LINC01933 NA NA NA NA NA +15:23979211 15:23941697 PWRN4--AC021439.1 BS_JTMXAMB7 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr15:0.03Mb],LOCAL_REARRANGEMENT:+:[33456]],duplication PWRN4 NA AC021439.1 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--METTL12 BS_JTMXAMB7 STARFUSION other 10 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--SNORA57 BS_JTMXAMB7 STARFUSION other 10 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_JTMXAMB7 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +X:141730219 X:141648799 SPANXD(31480)/MAGEC3(108097)--SPANXA2-OT1 BS_JTMXAMB7 ARRIBA other 2 1 high [],duplication SPANXD MAGEC3 SPANXA2-OT1 NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_JTMXAMB7 ARRIBA other 17 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JVA2NQFF ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JVA2NQFF ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:60726410 1:60733522 AC099792.1--AC099792.1 BS_JVA2NQFF ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing AC099792.1 NA AC099792.1 NA NA NA NA NA NA +10:126039294 10:126046132 ADAM12--ADAM12 BS_JVA2NQFF ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr10:0.38Mb]],duplication/non-canonical_splicing ADAM12 NA ADAM12 NA Oncogene Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_JVA2NQFF ARRIBA in-frame 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_JVA2NQFF ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_JVA2NQFF ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_JVA2NQFF ARRIBA in-frame 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_JVA2NQFF ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_JVA2NQFF ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_JVA2NQFF ARRIBA other 7 3 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_JVA2NQFF ARRIBA in-frame 9 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_JVA2NQFF ARRIBA other 8 4 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_JVA2NQFF ARRIBA in-frame 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_JVA2NQFF ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_JVA2NQFF ARRIBA in-frame 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_JVA2NQFF ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_JVA2NQFF ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_JVA2NQFF ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_JVA2NQFF ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_JVA2NQFF ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_JVA2NQFF ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_JVA2NQFF ARRIBA in-frame 17 14 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138861139 7:140787584 KIAA1549--BRAF BS_JVA2NQFF STARFUSION in-frame 12 14 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138861139 7:140787584 KIAA1549--BRAF BS_JVA2NQFF STARFUSION in-frame 5 14 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +12:69910930 12:69855280 MYRFL--MYRFL BS_JVA2NQFF ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing MYRFL NA MYRFL NA TranscriptionFactor TranscriptionFactor NA NA NA +2:1839149 2:1892287 MYT1L--MYT1L BS_JVA2NQFF ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +2:50539095 2:50538783 NRXN1--NRXN1 BS_JVA2NQFF ARRIBA other 3 0 high [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:1.31Mb]],inversion/3'-3' NRXN1 NA NRXN1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_JVA2NQFF ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_JVA2NQFF ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_JVA2NQFF ARRIBA other 14 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +4:16323036 4:16288884 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_JVA2NQFF ARRIBA other 2 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:134713200 2:134869041 TMEM163--CCNT2-AS1 BS_JVA2NQFF ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA +6:144782123 6:144700087 UTRN--UTRN BS_JVA2NQFF ARRIBA in-frame 62 6 high [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.57Mb]],duplication/non-canonical_splicing UTRN NA UTRN NA NA NA NA NA NA +X:70387297 X:70341799 KIF4A--KIF4A BS_JVW2JJ39 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.13Mb]],duplication/non-canonical_splicing KIF4A NA KIF4A NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_JVW2JJ39 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_JVW2JJ39 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JWSR581E ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JWSR581E ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_JWSR581E ARRIBA in-frame 11 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_JWSR581E ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JX449BF5 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JX449BF5 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_JX449BF5 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_JX449BF5 ARRIBA other 4 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +3:57357176 3:57363786 DNAH12--DNAH12 BS_JX449BF5 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +14:60019260 14:59997656 LRRC9--LRRC9 BS_JX449BF5 ARRIBA frameshift 20 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_JX449BF5 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_JX449BF5 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16238771 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_JX449BF5 ARRIBA other 1 2 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JX7S9MY7 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JX7S9MY7 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_JX7S9MY7 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_JX7S9MY7 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:108971001 13:37783360 AC004014.1(18335)/BUB3P1(23030)--TRPC4 BS_JXF8A2A6 ARRIBA other 4 0 medium [],translocation AC004014.1 BUB3P1 TRPC4 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JXF8A2A6 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JXF8A2A6 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_JXF8A2A6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +8:656672 8:674047 ERICH1--ERICH1 BS_JXF8A2A6 ARRIBA other 2 1 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.12Mb]],duplication ERICH1 NA ERICH1 NA Oncogene Oncogene NA NA NA +22:29287134 11:128805366 EWSR1--FLI1 BS_JXF8A2A6 ARRIBA in-frame 20 2 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +22:29287134 11:128805366 EWSR1--FLI1 BS_JXF8A2A6 STARFUSION in-frame 21 2 NA [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]] EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +20:38554605 20:37324576 RALGAPB--MANBAL(7316)/SRC(20109) BS_JXF8A2A6 ARRIBA other 3 0 medium [],inversion RALGAPB NA MANBAL SRC NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_JXF8A2A6 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JXNZYGCR ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JXNZYGCR ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_JXNZYGCR ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_JXNZYGCR ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211107377 AL590132.1--KCNH1 BS_JXNZYGCR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_JXNZYGCR ARRIBA frameshift 12 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_JXNZYGCR ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_JXNZYGCR ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_JXNZYGCR ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_JXNZYGCR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +15:50038768 15:50165536 ATP8B4--ATP8B4 BS_JXNZYGCR ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.32Mb]],duplication ATP8B4 NA ATP8B4 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_JXNZYGCR ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +3:62445765 3:62481869 CADPS--CADPS BS_JXNZYGCR ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.48Mb]],duplication/non-canonical_splicing CADPS NA CADPS NA NA NA NA NA NA +10:12998338 10:13074100 CCDC3--CCDC3 BS_JXNZYGCR ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA +12:69262562 12:26963342 CPSF6--FGFR1OP2 BS_JXNZYGCR ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr12:42.27Mb]],duplication CPSF6 NA FGFR1OP2 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_JXNZYGCR ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_JXNZYGCR ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +9:23762006 9:23765099 ELAVL2--ELAVL2 BS_JXNZYGCR ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_JXNZYGCR ARRIBA in-frame 36 8 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +7:127242695 7:127243515 GRM8--GRM8 BS_JXNZYGCR ARRIBA frameshift 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_JXNZYGCR ARRIBA frameshift 12 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_JXNZYGCR ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_JXNZYGCR ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_JXNZYGCR ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_JXNZYGCR ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_JXNZYGCR ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211107377 KCNH1--AL590132.1 BS_JXNZYGCR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_JXNZYGCR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_JXNZYGCR ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_JXNZYGCR ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +12:117761011 12:117761524 KSR2--KSR2 BS_JXNZYGCR ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.52Mb]],duplication/non-canonical_splicing KSR2 NA KSR2 NA Kinase, Kinase Kinase, Kinase NA NA NA +14:38762924 14:38334252 LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_JXNZYGCR ARRIBA other 4 0 high [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_JXNZYGCR ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +8:74612940 8:74500513 MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_JXNZYGCR ARRIBA other 4 0 medium [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_JXNZYGCR ARRIBA other 5 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +13:108898133 13:108883059 MYO16--MYO16 BS_JXNZYGCR ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_JXNZYGCR ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +12:44665484 12:44714741 NELL2--NELL2 BS_JXNZYGCR ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_JXNZYGCR ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:70745818 12:70761626 PTPRR--PTPRR BS_JXNZYGCR ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +6:52995905 14:49862666 RN7SK--RN7SL2 BS_JXNZYGCR STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +14:49862572 6:52995635 RN7SL2--7SK BS_JXNZYGCR STARFUSION other 7 14 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862574 6:52995791 RN7SL2--7SK BS_JXNZYGCR STARFUSION other 4 14 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +3:77602491 3:77564954 ROBO2--ROBO2 BS_JXNZYGCR ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_JXNZYGCR ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_JXNZYGCR ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +12:21292164 12:21306988 SLCO1A2--SLCO1A2 BS_JXNZYGCR ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA +12:108977398 12:108983761 SVOP--SVOP BS_JXNZYGCR ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.11Mb]],duplication/non-canonical_splicing SVOP NA SVOP NA NA NA NA NA NA +3:184863067 3:184853857 VPS8--VPS8 BS_JXNZYGCR ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.24Mb]],duplication/non-canonical_splicing VPS8 NA VPS8 NA NA NA NA NA NA +19:9305072 19:9314744 ZNF699--ZNF699(4906)/ZNF559(9028) BS_JXNZYGCR ARRIBA frameshift 16 1 high [],duplication ZNF699 NA ZNF699 ZNF559 TranscriptionFactor TranscriptionFactor NA TranscriptionFactor NA +2:65601157 5:79130933 AC007389.3--BHMT BS_JZRM1S3T ARRIBA other 25 0 medium [FA_CancerSupp,INTERCHROMOSOMAL[chr2--chr5]],translocation AC007389.3 NA BHMT NA NA NA NA NA NA +2:65601157 5:79130933 AC007389.3--BHMT BS_JZRM1S3T STARFUSION other 29 0 NA [FA_CancerSupp,INTERCHROMOSOMAL[chr2--chr5]] AC007389.3 NA BHMT NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JZRM1S3T ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JZRM1S3T ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:43180201 5:79130933 HGSNAT--BHMT BS_JZRM1S3T ARRIBA other 17 3 high [INTERCHROMOSOMAL[chr8--chr5]],translocation/3'-3' HGSNAT NA BHMT NA NA NA NA NA NA +14:59475869 14:59565275 L3HYPDH--CCDC175 BS_JZRM1S3T ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_JZRM1S3T ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_JZRM1S3T ARRIBA other 5 0 medium [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_K17VQECG ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_K17VQECG ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:42932118 7:87566976 AC010132.3--ABCB1 BS_K17VQECG ARRIBA in-frame 9 0 medium [INTRACHROMOSOMAL[chr7:44.57Mb]],duplication AC010132.3 NA ABCB1 NA NA Oncogene NA NA NA +7:42932118 7:87566241 AC010132.3--ABCB1 BS_K17VQECG ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:44.57Mb]],duplication AC010132.3 NA ABCB1 NA NA Oncogene NA NA NA +7:42932118 7:41776841 AC010132.3--INHBA-AS1 BS_K17VQECG ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:1.13Mb]],inversion AC010132.3 NA INHBA-AS1 NA NA NA NA NA NA +14:55397372 14:58910263 ATG14--LINC01500 BS_K17VQECG ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr14:3.42Mb]],inversion ATG14 NA LINC01500 NA NA NA NA NA NA +19:10544325 19:12234713 ATG4D--AC012618.3 BS_K17VQECG ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr19:1.64Mb]],deletion ATG4D NA AC012618.3 NA NA NA NA NA NA +19:10545130 19:12234713 ATG4D--AC012618.3 BS_K17VQECG ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr19:1.64Mb]],deletion ATG4D NA AC012618.3 NA NA NA NA NA NA +19:10544325 19:12237090 ATG4D--AC012618.3 BS_K17VQECG ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr19:1.64Mb]],deletion ATG4D NA AC012618.3 NA NA NA NA NA NA +19:10547115 19:12234713 ATG4D--AC012618.3 BS_K17VQECG ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr19:1.64Mb]],deletion ATG4D NA AC012618.3 NA NA NA NA NA NA +9:22127402 9:22046751 CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_K17VQECG ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +19:4405962 19:28475555 CHAF1A--AC005381.1 BS_K17VQECG ARRIBA frameshift 72 7 high [INTRACHROMOSOMAL[chr19:23.99Mb]],deletion/5'-5' CHAF1A NA AC005381.1 NA NA NA NA NA NA +19:4405962 19:28475555 CHAF1A--AC005394.2 BS_K17VQECG ARRIBA frameshift 72 7 high [],deletion/5'-5' CHAF1A NA AC005394.2 NA NA NA NA NA NA +14:39387881 14:30369506 CTAGE5--AL133372.2(72463)/AL079305.1(602) BS_K17VQECG ARRIBA other 6 0 low [],inversion CTAGE5 NA AL133372.2 AL079305.1 NA NA NA NA NA +14:59263660 14:65561337 DAAM1--FUT8 BS_K17VQECG ARRIBA frameshift 10 1 high [INTRACHROMOSOMAL[chr14:6.04Mb]],deletion DAAM1 NA FUT8 NA NA Oncogene NA NA NA +19:12881290 22:19788960 DNASE2--GNB1L BS_K17VQECG ARRIBA frameshift 13 0 high [INTERCHROMOSOMAL[chr19--chr22]],translocation DNASE2 NA GNB1L NA NA NA NA NA NA +19:12881290 22:19788960 DNASE2--GNB1L BS_K17VQECG STARFUSION frameshift 13 0 NA [INTERCHROMOSOMAL[chr19--chr22]] DNASE2 NA GNB1L NA NA NA NA NA NA +19:10136121 19:15059461 DNMT1--CASP14(1168)/OR1I1(22750) BS_K17VQECG ARRIBA frameshift 3 0 medium [],duplication DNMT1 NA CASP14 OR1I1 TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA +14:64213144 14:39388115 ESR2--CTAGE5 BS_K17VQECG ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr14:24.70Mb]],inversion ESR2 NA CTAGE5 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA +12:22644022 6:3324002 ETNK1--SLC22A23 BS_K17VQECG ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr12--chr6]],translocation ETNK1 NA SLC22A23 NA CosmicCensus, Kinase Oncogene NA NA NA +12:22659154 6:3324002 ETNK1--SLC22A23 BS_K17VQECG ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation ETNK1 NA SLC22A23 NA CosmicCensus, Kinase Oncogene NA NA NA +12:22625586 6:3324002 ETNK1--SLC22A23 BS_K17VQECG ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr6]],translocation ETNK1 NA SLC22A23 NA CosmicCensus, Kinase Oncogene NA NA NA +14:52919123 14:60156152 FERMT2--DHRS7 BS_K17VQECG ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr14:7.19Mb]],duplication FERMT2 NA DHRS7 NA NA NA NA NA NA +3:71112536 3:74757559 FOXP1--CNTN3(236419)/NIPA2P2(326596) BS_K17VQECG ARRIBA frameshift 3 0 medium [],duplication FOXP1 NA CNTN3 NIPA2P2 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +22:19854443 19:28466780 GNB1L--AC005381.1 BS_K17VQECG ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr22--chr19]],translocation GNB1L NA AC005381.1 NA NA NA NA NA NA +22:19854443 19:28466780 GNB1L--AC005394.2 BS_K17VQECG ARRIBA other 5 0 medium [],translocation GNB1L NA AC005394.2 NA NA NA NA NA NA +7:41777605 7:87566976 INHBA-AS1--ABCB1 BS_K17VQECG ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:45.72Mb]],inversion INHBA-AS1 NA ABCB1 NA NA Oncogene NA NA NA +19:6422340 19:4366994 KHSRP--SH3GL1 BS_K17VQECG ARRIBA frameshift 10 0 high [INTRACHROMOSOMAL[chr19:2.01Mb]],deletion KHSRP NA SH3GL1 NA NA CosmicCensus, Oncogene NA NA NA +19:6424453 19:4366994 KHSRP--SH3GL1 BS_K17VQECG ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr19:2.01Mb]],deletion KHSRP NA SH3GL1 NA NA CosmicCensus, Oncogene NA NA NA +7:98204186 7:92844897 LMTK2--AC002454.1 BS_K17VQECG ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr7:5.19Mb]],inversion/3'-3' LMTK2 NA AC002454.1 NA Kinase NA NA NA NA +7:98204186 7:92833690 LMTK2--CDK6 BS_K17VQECG ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr7:5.27Mb]],inversion LMTK2 NA CDK6 NA Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +3:66451559 7:152273867 LRIG1--KMT2C BS_K17VQECG ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr3--chr7]],translocation LRIG1 NA KMT2C NA TumorSuppressorGene, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +19:4117419 22:20243110 MAP2K2--RTN4R BS_K17VQECG ARRIBA frameshift 10 1 high [INTERCHROMOSOMAL[chr19--chr22]],translocation MAP2K2 NA RTN4R NA Kinase, CosmicCensus, Kinase NA NA NA NA +19:4117419 22:20243110 MAP2K2--RTN4R BS_K17VQECG STARFUSION frameshift 11 1 NA [INTERCHROMOSOMAL[chr19--chr22]] MAP2K2 NA RTN4R NA Kinase, CosmicCensus, Kinase NA NA NA NA +19:12848057 4:42962892 MAST1--GRXCR1 BS_K17VQECG ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr19--chr4]],translocation MAST1 NA GRXCR1 NA Kinase, Kinase NA NA NA NA +14:50763826 14:29381264 NIN--AL133166.1 BS_K17VQECG ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr14:21.34Mb]],deletion NIN NA AL133166.1 NA CosmicCensus, Oncogene NA NA NA NA +14:50763826 14:66257461 NIN--AL359232.1 BS_K17VQECG ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr14:15.38Mb]],duplication NIN NA AL359232.1 NA CosmicCensus, Oncogene NA NA NA NA +13:113190872 7:72023769 PCID2--CALN1 BS_K17VQECG ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr13--chr7]],translocation PCID2 NA CALN1 NA NA NA NA NA NA +13:113185485 7:72023769 PCID2--CALN1 BS_K17VQECG ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr13--chr7]],translocation PCID2 NA CALN1 NA NA NA NA NA NA +13:113195071 7:72023769 PCID2--CALN1 BS_K17VQECG ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr13--chr7]],translocation PCID2 NA CALN1 NA NA NA NA NA NA +4:39976440 22:21946108 PDS5A--PPM1F BS_K17VQECG ARRIBA in-frame 12 1 high [INTERCHROMOSOMAL[chr4--chr22]],translocation PDS5A NA PPM1F NA NA NA NA NA NA +4:39976440 22:21934226 PDS5A--PPM1F BS_K17VQECG ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr4--chr22]],translocation PDS5A NA PPM1F NA NA NA NA NA NA +4:39976440 22:21939680 PDS5A--PPM1F BS_K17VQECG ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr4--chr22]],translocation PDS5A NA PPM1F NA NA NA NA NA NA +7:42932118 7:87566976 PSMA2--ABCB1 BS_K17VQECG ARRIBA in-frame 9 0 medium [INTRACHROMOSOMAL[chr7:44.57Mb]],duplication PSMA2 NA ABCB1 NA NA Oncogene NA NA NA +7:42932118 7:87566241 PSMA2--ABCB1 BS_K17VQECG ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:44.57Mb]],duplication PSMA2 NA ABCB1 NA NA Oncogene NA NA NA +7:42932118 7:41776841 PSMA2--INHBA-AS1 BS_K17VQECG ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:1.14Mb]],inversion PSMA2 NA INHBA-AS1 NA NA NA NA NA NA +6:63572719 13:54791422 PTP4A1--RPL13AP25(350107)/AL390964.1(149421) BS_K17VQECG ARRIBA other 2 0 medium [],translocation PTP4A1 NA RPL13AP25 AL390964.1 NA NA NA NA NA +13:48381443 13:56647835 RB1--SPATA2P1(430893)/RN7SKP6(237449) BS_K17VQECG ARRIBA frameshift 1 0 low [],deletion RB1 NA SPATA2P1 RN7SKP6 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_K17VQECG ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +22:19854443 19:28466780 RTL10--AC005381.1 BS_K17VQECG ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr22--chr19]],translocation RTL10 NA AC005381.1 NA NA NA NA NA NA +22:19854443 19:28466780 RTL10--AC005394.2 BS_K17VQECG ARRIBA other 5 0 medium [],translocation RTL10 NA AC005394.2 NA NA NA NA NA NA +19:5626489 19:28722780 SAFB--AC005394.2 BS_K17VQECG ARRIBA frameshift 1 1 low [],inversion SAFB NA AC005394.2 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA +19:5626489 19:28722780 SAFB--AC005524.1 BS_K17VQECG ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr19:23.01Mb]],inversion SAFB NA AC005524.1 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA +19:5626489 19:28735852 SAFB--AC005524.1(8075)/MAN1A2P1(54960) BS_K17VQECG ARRIBA frameshift 26 3 high [],inversion SAFB NA AC005524.1 MAN1A2P1 TumorSuppressorGene, TranscriptionFactor NA NA NA NA +19:5609995 19:12843994 SAFB2--HOOK2 BS_K17VQECG ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr19:7.14Mb]],duplication SAFB2 NA HOOK2 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA +19:5609995 19:12843994 SAFB2--MAST1 BS_K17VQECG ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr19:7.21Mb]],duplication/5'-5' SAFB2 NA MAST1 NA TumorSuppressorGene, TranscriptionFactor Kinase, Kinase NA NA NA +14:30708065 14:81771151 SCFD1--AL355838.1 BS_K17VQECG ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr14:51.01Mb]],deletion SCFD1 NA AL355838.1 NA NA NA NA NA NA +14:30708065 14:51362153 SCFD1--AL358332.1 BS_K17VQECG ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr14:20.61Mb]],inversion SCFD1 NA AL358332.1 NA NA NA NA NA NA +14:30708065 14:51345075 SCFD1--AL358332.1 BS_K17VQECG ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:20.61Mb]],inversion SCFD1 NA AL358332.1 NA NA NA NA NA NA +19:10985405 19:15427533 SMARCA4--WIZ BS_K17VQECG ARRIBA in-frame 16 3 high [INTRACHROMOSOMAL[chr19:4.35Mb]],inversion SMARCA4 NA WIZ NA TumorSuppressorGene, CosmicCensus, Oncogene TranscriptionFactor NA NA NA +19:10985405 19:15428508 SMARCA4--WIZ BS_K17VQECG ARRIBA in-frame 2 3 high [INTRACHROMOSOMAL[chr19:4.35Mb]],inversion SMARCA4 NA WIZ NA TumorSuppressorGene, CosmicCensus, Oncogene TranscriptionFactor NA NA NA +19:10985405 19:15427533 SMARCA4--WIZ BS_K17VQECG STARFUSION in-frame 16 3 NA [INTRACHROMOSOMAL[chr19:4.35Mb]] SMARCA4 NA WIZ NA TumorSuppressorGene, CosmicCensus, Oncogene TranscriptionFactor NA NA NA +14:34999649 14:61255529 SRP54--PRKCH BS_K17VQECG ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr14:26.16Mb]],inversion/3'-3' SRP54 NA PRKCH NA NA Kinase NA NA NA +14:64213144 14:39388115 SYNE2--CTAGE5 BS_K17VQECG ARRIBA frameshift 29 0 medium [INTRACHROMOSOMAL[chr14:24.46Mb]],inversion/3'-3' SYNE2 NA CTAGE5 NA Oncogene NA NA NA NA +14:63853143 14:34059132 SYNE2--EGLN3-AS1 BS_K17VQECG ARRIBA other 12 0 medium [INTRACHROMOSOMAL[chr14:29.79Mb]],duplication SYNE2 NA EGLN3-AS1 NA Oncogene NA NA NA NA +14:63853143 14:34059132 SYNE2--EGLN3-AS1 BS_K17VQECG STARFUSION other 13 0 NA [INTRACHROMOSOMAL[chr14:29.79Mb]] SYNE2 NA EGLN3-AS1 NA Oncogene NA NA NA NA +14:64213005 14:59607492 SYNE2--RTN1 BS_K17VQECG ARRIBA frameshift 2 0 low [ChimerSeq,INTRACHROMOSOMAL[chr14:3.98Mb]],inversion SYNE2 NA RTN1 NA Oncogene NA NA NA TCGAFusion +22:16638740 19:5908824 TPTEP1--VMAC BS_K17VQECG ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr22--chr19]],translocation TPTEP1 NA VMAC NA NA NA NA NA NA +4:39244552 4:38704159 WDR19--KLF3(3117)/RNA5SP158(54632) BS_K17VQECG ARRIBA frameshift 5 0 medium [],inversion WDR19 NA KLF3 RNA5SP158 NA Oncogene, TranscriptionFactor NA NA NA +19:7629477 7:37013435 XAB2--ELMO1 BS_K17VQECG ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr19--chr7]],translocation XAB2 NA ELMO1 NA NA Oncogene NA NA NA +19:4066682 4:42744434 ZBTB7A--AC096734.1(37099)/RN7SKP82(147962) BS_K17VQECG ARRIBA other 8 0 high [],translocation ZBTB7A NA AC096734.1 RN7SKP82 TranscriptionFactor NA NA NA NA +6:52995909 14:20343397 7SK--AL355075.4 BS_K2FHZGTK STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL355075.4 NA NA NA NA NA NA +6:52995907 14:20343396 7SK--RPPH1 BS_K2FHZGTK STARFUSION other 3 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_K2FHZGTK ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_K2FHZGTK ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:18343617 14:98387102 AC126755.1--RN7SL714P(35438)/AL132719.1(110030) BS_K2FHZGTK ARRIBA other 2 1 medium [],translocation AC126755.1 NA RN7SL714P AL132719.1 NA NA NA NA NA +12:111084853 12:116237705 CUX2--MED13L BS_K2FHZGTK ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:4.60Mb]],duplication/3'-3' CUX2 NA MED13L NA TranscriptionFactor NA NA NA NA +22:31495983 17:27212658 EIF4ENIF1--AC069061.4(128622)/AC129926.1(25201) BS_K2FHZGTK ARRIBA other 2 0 low [],translocation EIF4ENIF1 NA AC069061.4 AC129926.1 NA NA NA NA NA +12:116096669 12:111085070 MED13L--CUX2 BS_K2FHZGTK ARRIBA frameshift 45 3 high [INTRACHROMOSOMAL[chr12:4.60Mb]],deletion/5'-5' MED13L NA CUX2 NA NA TranscriptionFactor NA NA NA +16:67277594 3:129171771 PLEKHG4--CNBP BS_K2FHZGTK ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr3]],translocation/3'-3' PLEKHG4 NA CNBP NA NA CosmicCensus, Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_K2FHZGTK ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:71187401 9:5988545 SLC4A4--KIAA2026 BS_K2FHZGTK ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr4--chr9]],translocation SLC4A4 NA KIAA2026 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_K2VYFVKZ ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_K2VYFVKZ ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:7804692 5:7784365 ADCY2--ADCY2 BS_K2VYFVKZ ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_K2VYFVKZ ARRIBA other 6 3 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_K2VYFVKZ ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:195732 8:140405698 FAM20C--TRAPPC9 BS_K2VYFVKZ ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr7--chr8]],translocation FAM20C NA TRAPPC9 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_K2VYFVKZ ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_K2VYFVKZ ARRIBA in-frame 7 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_K2VYFVKZ ARRIBA other 33 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +22:21008779 22:21013184 AC002472.2--AC002472.3 BS_K3ER45RV ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[1931]],duplication AC002472.2 NA AC002472.3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_K3ER45RV ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_K3ER45RV ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +18:65824831 18:65809704 CDH7--CDH7 BS_K3ER45RV ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_K3ER45RV ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_K3ER45RV ARRIBA other 6 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +9:70827847 9:70864511 TRPM3--TRPM3 BS_K3ER45RV ARRIBA frameshift 30 3 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_K3ER45RV ARRIBA other 10 1 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_K5802F84 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_K5802F84 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_K5802F84 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_K5802F84 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_K5802F84 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_K5802F84 ARRIBA frameshift 10 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_K5802F84 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_K5802F84 ARRIBA frameshift 15 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_K5802F84 ARRIBA frameshift 46 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_K5802F84 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_K5802F84 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_K5802F84 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211103496 1:211107377 AL590132.1--KCNH1 BS_K5802F84 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +18:79307234 18:79193183 ATP9B--ATP9B BS_K5802F84 ARRIBA frameshift 22 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +4:6007996 4:6011968 C4orf50--C4orf50 BS_K5802F84 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing C4orf50 NA C4orf50 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_K5802F84 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_K5802F84 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +1:58506060 1:58539310 DAB1--OMA1 BS_K5802F84 ARRIBA other 9 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58534331 DAB1--OMA1 BS_K5802F84 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58253807 1:58539310 DAB1--OMA1 BS_K5802F84 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58536741 DAB1--OMA1 BS_K5802F84 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58527261 1:58536741 DAB1--OMA1 BS_K5802F84 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58527261 1:58539310 DAB1--OMA1 BS_K5802F84 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +4:150239875 4:150203795 DCLK2--DCLK2 BS_K5802F84 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.18Mb]],duplication/non-canonical_splicing DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_K5802F84 ARRIBA frameshift 28 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +9:23762006 9:23765099 ELAVL2--ELAVL2 BS_K5802F84 ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA +X:47649921 X:47652144 ELK1--UXT BS_K5802F84 ARRIBA other 3 1 low [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:-:[1194]],duplication ELK1 NA UXT NA Oncogene, TranscriptionFactor NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_K5802F84 ARRIBA in-frame 121 16 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_K5802F84 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +2:24183645 2:24135119 FAM228A--FAM228B BS_K5802F84 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[5429]],duplication FAM228A NA FAM228B NA NA NA NA NA NA +2:24190553 2:24135119 FAM228A--FAM228B BS_K5802F84 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[5429]],duplication FAM228A NA FAM228B NA NA NA NA NA NA +5:151556058 5:151458788 FAT2--SLC36A1 BS_K5802F84 ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_INVERSION:-:+:[11712]],duplication/3'-3' FAT2 NA SLC36A1 NA Oncogene NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_K5802F84 ARRIBA other 3 0 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +9:101670060 9:101687200 GRIN3A--GRIN3A BS_K5802F84 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.17Mb]],duplication/non-canonical_splicing GRIN3A NA GRIN3A NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_K5802F84 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_K5802F84 ARRIBA in-frame 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +7:43501322 7:43468920 HECW1--HECW1 BS_K5802F84 ARRIBA frameshift 10 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_K5802F84 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_K5802F84 ARRIBA frameshift 15 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_K5802F84 ARRIBA frameshift 46 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_K5802F84 ARRIBA in-frame 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_K5802F84 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_K5802F84 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_K5802F84 ARRIBA frameshift 6 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_K5802F84 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_K5802F84 ARRIBA frameshift 10 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_K5802F84 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_K5802F84 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211103496 1:211107377 KCNH1--AL590132.1 BS_K5802F84 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_K5802F84 ARRIBA frameshift 46 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_K5802F84 ARRIBA frameshift 10 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_K5802F84 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +1:196373140 1:196479238 KCNT2--KCNT2 BS_K5802F84 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_K5802F84 ARRIBA other 9 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_K5802F84 ARRIBA frameshift 15 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +X:139589835 X:139605779 MCF2--MCF2 BS_K5802F84 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.13Mb]],duplication/non-canonical_splicing MCF2 NA MCF2 NA Oncogene Oncogene NA NA NA +8:74612940 8:74500513 MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_K5802F84 ARRIBA other 3 0 medium [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_K5802F84 ARRIBA other 5 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +6:61606290 6:61661364 MTRNR2L9(31888)/AL049544.1(23943)--AL049544.1 BS_K5802F84 ARRIBA other 4 0 medium [],duplication MTRNR2L9 AL049544.1 AL049544.1 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_K5802F84 ARRIBA other 16 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_K5802F84 ARRIBA in-frame 14 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_K5802F84 ARRIBA in-frame 15 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +7:77951712 7:77920279 PHTF2--PHTF2 BS_K5802F84 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_K5802F84 ARRIBA in-frame 24 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_K5802F84 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_K5802F84 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_K5802F84 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_K5802F84 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:158617205 4:158607972 RXFP1--RXFP1 BS_K5802F84 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA +2:165100302 2:165115575 SCN3A--SCN3A BS_K5802F84 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.12Mb]],duplication/non-canonical_splicing SCN3A NA SCN3A NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_K5802F84 ARRIBA other 7 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +1:66690316 1:66677004 SGIP1--SGIP1 BS_K5802F84 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SGIP1 NA SGIP1 NA NA NA NA NA NA +20:10185808 20:10209765 SNAP25-AS1--SNAP25-AS1 BS_K5802F84 ARRIBA other 4 1 high [SELFIE,INTRACHROMOSOMAL[chr20:0.35Mb]],duplication SNAP25-AS1 NA SNAP25-AS1 NA NA NA NA NA NA +8:50502880 8:50438543 SNTG1--SNTG1 BS_K5802F84 ARRIBA frameshift 18 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_K5802F84 ARRIBA in-frame 7 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_K5802F84 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +X:146955175 X:146916390 Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_K5802F84 ARRIBA other 20 1 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA +15:21261127 15:20671268 AC068446.3(980)/AC068446.1(32526)--NBEAP1 BS_K74PZET7 ARRIBA other 4 2 high [],deletion AC068446.3 AC068446.1 NBEAP1 NA NA Oncogene NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_K74PZET7 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +20:46474501 20:46496952 MKRN7P--AL031686.1(221)/ZNF334(2678) BS_K74PZET7 ARRIBA other 3 0 medium [],duplication MKRN7P NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA +8:54739029 8:54648985 RP1--RP1 BS_K74PZET7 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.32Mb]],duplication/non-canonical_splicing RP1 NA RP1 NA NA NA NA NA NA +1:114947320 1:114923449 SYCP1--SYCP1 BS_K74PZET7 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_K7MVS0Z7 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_K7MVS0Z7 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_K7MVS0Z7 ARRIBA other 7 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_K7MVS0Z7 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_K7MVS0Z7 ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +10:58267422 10:59234304 IPMK--PHYHIPL BS_K7MVS0Z7 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr10:0.91Mb]],inversion IPMK NA PHYHIPL NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_K7MVS0Z7 ARRIBA in-frame 9 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_K7MVS0Z7 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:114978143 10:114970368 TRUB1(467)/AL355340.1(16514)--TRUB1 BS_K7MVS0Z7 ARRIBA other 5 0 medium [],duplication TRUB1 AL355340.1 TRUB1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_K81DR8XG ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_K81DR8XG ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_K81DR8XG ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +4:139125164 4:134545286 ELF2--LINC02462(87434)/AC093722.1(214113) BS_K81DR8XG ARRIBA frameshift 1 2 high [],inversion ELF2 NA LINC02462 AC093722.1 TranscriptionFactor NA NA NA NA +5:177089940 3:48413169 FGFR4--PLXNB1 BS_K81DR8XG ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr5--chr3]],translocation FGFR4 NA PLXNB1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA +8:70155971 2:222202190 NCOA2--PAX3 BS_K81DR8XG ARRIBA in-frame 6 1 high [INTERCHROMOSOMAL[chr8--chr2]],translocation NCOA2 NA PAX3 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +8:70138203 2:222232283 NCOA2--PAX3 BS_K81DR8XG ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr8--chr2]],translocation NCOA2 NA PAX3 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_K81DR8XG ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +2:222220140 8:70148483 PAX3--NCOA2 BS_K81DR8XG ARRIBA in-frame 26 2 high [ChimerKB,Cosmic,ChimerPub,INTERCHROMOSOMAL[chr2--chr8]],translocation PAX3 NA NCOA2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +2:222294167 8:70144848 PAX3--NCOA2 BS_K81DR8XG ARRIBA in-frame 1 0 low [ChimerKB,Cosmic,ChimerPub,INTERCHROMOSOMAL[chr2--chr8]],translocation PAX3 NA NCOA2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +2:222220140 8:70148483 PAX3--NCOA2 BS_K81DR8XG STARFUSION in-frame 26 2 NA [ChimerKB,Cosmic,ChimerPub,INTERCHROMOSOMAL[chr2--chr8]] PAX3 NA NCOA2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_K81DR8XG ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:3206418 12:3058977 TSPAN9--AC125807.2(14027)/AC125807.1(12555) BS_K81DR8XG ARRIBA frameshift 1 2 high [],duplication TSPAN9 NA AC125807.2 AC125807.1 NA NA NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_KBT7MQ6H ARRIBA in-frame 125 5 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_KBT7MQ6H ARRIBA in-frame 15 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662347 C11orf95--RELA BS_KBT7MQ6H ARRIBA frameshift 1 7 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662088 C11orf95--RELA BS_KBT7MQ6H ARRIBA in-frame 1 3 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_KBT7MQ6H ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_KBT7MQ6H STARFUSION in-frame 133 8 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_KBT7MQ6H STARFUSION in-frame 15 8 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:115504271 11:104999028 CADM1--CASP5 BS_KBT7MQ6H ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:10.15Mb]],deletion CADM1 NA CASP5 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +11:3038050 11:117175906 CARS--PAFAH1B2 BS_KBT7MQ6H ARRIBA in-frame 20 0 high [INTRACHROMOSOMAL[chr11:114.09Mb]],inversion CARS NA PAFAH1B2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +11:67506888 11:65584605 CDK2AP2--EHBP1L1 BS_KBT7MQ6H ARRIBA frameshift 5 0 low [INTRACHROMOSOMAL[chr11:1.91Mb]],deletion/5'-5' CDK2AP2 NA EHBP1L1 NA NA NA NA NA NA +X:36085538 X:36065643 CFAP47--CFAP47 BS_KBT7MQ6H ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +11:11998696 11:33141986 DKK3--CSTF3 BS_KBT7MQ6H ARRIBA in-frame 31 0 high [INTRACHROMOSOMAL[chr11:21.07Mb]],duplication DKK3 NA CSTF3 NA TumorSuppressorGene NA NA NA NA +11:11998696 11:33141986 DKK3--CSTF3 BS_KBT7MQ6H STARFUSION in-frame 35 0 NA [INTRACHROMOSOMAL[chr11:21.07Mb]] DKK3 NA CSTF3 NA TumorSuppressorGene NA NA NA NA +11:11998696 11:33182808 DKK3--CSTF3-AS1 BS_KBT7MQ6H ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr11:21.15Mb]],duplication/5'-5' DKK3 NA CSTF3-AS1 NA TumorSuppressorGene NA NA NA NA +11:92355404 11:122418165 FAT3--MIR100HG BS_KBT7MQ6H ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr11:29.13Mb]],deletion/5'-5' FAT3 NA MIR100HG NA CosmicCensus NA NA NA NA +11:65400867 11:86559823 FRMD8--ME3 BS_KBT7MQ6H ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:21.03Mb]],inversion FRMD8 NA ME3 NA Oncogene Oncogene NA NA NA +11:65543105 11:65479210 LTBP3--AP000769.1(12490)/AP000769.3(8031) BS_KBT7MQ6H ARRIBA frameshift 9 3 high [],inversion LTBP3 NA AP000769.1 AP000769.3 Oncogene NA NA NA NA +11:65543105 11:65496506 LTBP3--AP000769.3(8370)/MALAT1(1256) BS_KBT7MQ6H ARRIBA frameshift 4 0 medium [],inversion LTBP3 NA AP000769.3 MALAT1 Oncogene NA NA CosmicCensus, Oncogene NA +11:73292920 11:65584959 P2RY6--EHBP1L1 BS_KBT7MQ6H ARRIBA other 10 0 high [INTRACHROMOSOMAL[chr11:7.67Mb]],duplication P2RY6 NA EHBP1L1 NA NA NA NA NA NA +11:74204445 11:115240420 PPME1--CADM1 BS_KBT7MQ6H ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:40.91Mb]],inversion PPME1 NA CADM1 NA NA TumorSuppressorGene NA NA NA +11:10294015 11:30630059 SBF2--AL136088.1 BS_KBT7MQ6H ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:20.29Mb]],inversion SBF2 NA AL136088.1 NA NA NA NA NA NA +11:10294015 11:30592436 SBF2--AL136088.1 BS_KBT7MQ6H ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:20.29Mb]],inversion SBF2 NA AL136088.1 NA NA NA NA NA NA +11:62824166 11:20364237 STX5--HTATIP2 BS_KBT7MQ6H ARRIBA in-frame 7 0 high [INTRACHROMOSOMAL[chr11:42.42Mb]],inversion STX5 NA HTATIP2 NA NA TumorSuppressorGene, Oncogene NA NA NA +11:62824166 11:20367174 STX5--HTATIP2 BS_KBT7MQ6H ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:42.42Mb]],inversion STX5 NA HTATIP2 NA NA TumorSuppressorGene, Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KDSTG5YY ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KDSTG5YY ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:171251523 1:170807604 AL445673.1--PRRX1(68185)/MROH9(127867) BS_KDSTG5YY ARRIBA other 1 2 high [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +10:47542167 10:46940582 AL591684.2--PTPN20 BS_KDSTG5YY ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr10:0.52Mb]],inversion AL591684.2 NA PTPN20 NA NA NA NA NA NA +10:47542167 10:46940582 BMS1P2--PTPN20 BS_KDSTG5YY ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr10:0.54Mb]],inversion BMS1P2 NA PTPN20 NA NA NA NA NA NA +10:129536377 10:129177603 MGMT--AL355537.2(217541)/AL391869.1(100648) BS_KDSTG5YY ARRIBA frameshift 2 0 medium [],duplication MGMT NA AL355537.2 AL391869.1 CosmicCensus NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KDSTG5YY ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +17:1083520 17:31305630 ABR--AC134669.2 BS_KE56MMY0 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr17:30.08Mb]],duplication ABR NA AC134669.2 NA Oncogene NA NA NA NA +17:1083520 17:31305630 ABR--EVI2B BS_KE56MMY0 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr17:30.07Mb]],duplication ABR NA EVI2B NA Oncogene NA NA NA NA +10:124806921 17:32127460 ABRAXAS2--AC116407.2 BS_KE56MMY0 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr10--chr17]],translocation ABRAXAS2 NA AC116407.2 NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_KE56MMY0 STARFUSION other 10 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +1:144245686 1:174506941 AC245595.1--RABGAP1L BS_KE56MMY0 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:29.91Mb]],duplication/5'-5' AC245595.1 NA RABGAP1L NA NA Oncogene NA NA NA +11:47243239 3:51248775 ACP2--DOCK3 BS_KE56MMY0 ARRIBA frameshift 11 1 high [INTERCHROMOSOMAL[chr11--chr3]],translocation/5'-5' ACP2 NA DOCK3 NA NA NA NA NA NA +1:154596800 1:156528890 ADAR--IQGAP3 BS_KE56MMY0 ARRIBA frameshift 12 1 medium [INTRACHROMOSOMAL[chr1:1.90Mb]],duplication ADAR NA IQGAP3 NA NA NA NA NA NA +1:154596805 1:156528610 ADAR--IQGAP3 BS_KE56MMY0 ARRIBA in-frame 8 1 medium [INTRACHROMOSOMAL[chr1:1.90Mb]],duplication ADAR NA IQGAP3 NA NA NA NA NA NA +1:154596805 1:156528060 ADAR--IQGAP3 BS_KE56MMY0 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:1.90Mb]],duplication ADAR NA IQGAP3 NA NA NA NA NA NA +16:4113750 16:2519218 ADCY9--AC093525.2 BS_KE56MMY0 ARRIBA frameshift 6 4 medium [INTRACHROMOSOMAL[chr16:1.43Mb]],inversion ADCY9 NA AC093525.2 NA NA NA NA NA NA +16:4113750 16:2519541 ADCY9--AC093525.2 BS_KE56MMY0 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr16:1.43Mb]],inversion ADCY9 NA AC093525.2 NA NA NA NA NA NA +16:4113750 16:2519218 ADCY9--AC093525.2 BS_KE56MMY0 STARFUSION frameshift 6 4 NA [INTRACHROMOSOMAL[chr16:1.43Mb]] ADCY9 NA AC093525.2 NA NA NA NA NA NA +16:4113750 16:2519218 ADCY9--ATP6V0C BS_KE56MMY0 ARRIBA in-frame 6 4 medium [INTRACHROMOSOMAL[chr16:1.43Mb]],inversion ADCY9 NA ATP6V0C NA NA NA NA NA NA +16:4113750 16:2519541 ADCY9--ATP6V0C BS_KE56MMY0 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr16:1.43Mb]],inversion ADCY9 NA ATP6V0C NA NA NA NA NA NA +16:4113750 16:2519218 ADCY9--ATP6V0C BS_KE56MMY0 STARFUSION in-frame 6 4 NA [INTRACHROMOSOMAL[chr16:1.43Mb]] ADCY9 NA ATP6V0C NA NA NA NA NA NA +6:37818578 6:46906786 AL121574.1--ADGRF5 BS_KE56MMY0 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:9.03Mb]],duplication AL121574.1 NA ADGRF5 NA NA NA NA NA NA +1:161513708 1:156647113 AL590385.2--BCAN BS_KE56MMY0 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr1:4.85Mb]],duplication AL590385.2 NA BCAN NA NA NA NA NA NA +11:10478730 11:3166289 AMPD3--OSBPL5 BS_KE56MMY0 ARRIBA frameshift 10 0 medium [INTRACHROMOSOMAL[chr11:7.14Mb]],duplication/5'-5' AMPD3 NA OSBPL5 NA NA NA NA NA NA +11:43312196 16:3588587 API5--SLX4 BS_KE56MMY0 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr11--chr16]],translocation/5'-5' API5 NA SLX4 NA NA TumorSuppressorGene NA NA NA +1:155950299 1:156874571 ARHGEF2--NTRK1 BS_KE56MMY0 ARRIBA frameshift 7 3 medium [INTRACHROMOSOMAL[chr1:0.81Mb]],inversion ARHGEF2 NA NTRK1 NA Oncogene CosmicCensus, Oncogene, Kinase NA NA NA +1:155950269 1:156874571 ARHGEF2--NTRK1 BS_KE56MMY0 ARRIBA frameshift 2 4 medium [INTRACHROMOSOMAL[chr1:0.81Mb]],inversion ARHGEF2 NA NTRK1 NA Oncogene CosmicCensus, Oncogene, Kinase NA NA NA +1:155950299 1:156874571 ARHGEF2--NTRK1 BS_KE56MMY0 STARFUSION in-frame 7 4 NA [INTRACHROMOSOMAL[chr1:0.81Mb]] ARHGEF2 NA NTRK1 NA Oncogene CosmicCensus, Oncogene, Kinase NA NA NA +6:36207444 11:38013629 BRPF3--AC103798.2 BS_KE56MMY0 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr6--chr11]],translocation/5'-5' BRPF3 NA AC103798.2 NA NA NA NA NA NA +19:55289620 5:19402218 BRSK1--HSPD1P15(167731)/CDH18(70733) BS_KE56MMY0 ARRIBA frameshift 16 2 high [],translocation BRSK1 NA HSPD1P15 CDH18 Kinase, TumorSuppressorGene, Kinase NA NA NA NA +3:49244733 5:78564871 CCDC36--LHFPL2 BS_KE56MMY0 ARRIBA frameshift 21 0 high [INTERCHROMOSOMAL[chr3--chr5]],translocation CCDC36 NA LHFPL2 NA NA NA NA NA NA +3:49241389 5:78564871 CCDC36--LHFPL2 BS_KE56MMY0 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr3--chr5]],translocation CCDC36 NA LHFPL2 NA NA NA NA NA NA +3:49244733 5:78564871 CCDC36--LHFPL2 BS_KE56MMY0 STARFUSION other 25 0 NA [INTERCHROMOSOMAL[chr3--chr5]] CCDC36 NA LHFPL2 NA NA NA NA NA NA +6:42048501 11:10461515 CCND3--AMPD3 BS_KE56MMY0 ARRIBA other 8 1 high [INTERCHROMOSOMAL[chr6--chr11]],translocation CCND3 NA AMPD3 NA CosmicCensus, Oncogene NA NA NA NA +6:42048501 6:42924229 CCND3--PTCRA BS_KE56MMY0 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:0.87Mb]],inversion CCND3 NA PTCRA NA CosmicCensus, Oncogene Oncogene NA NA NA +6:42048501 6:42923027 CCND3--PTCRA BS_KE56MMY0 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr6:0.87Mb]],inversion CCND3 NA PTCRA NA CosmicCensus, Oncogene Oncogene NA NA NA +11:35208206 6:9845593 CD44--OFCC1 BS_KE56MMY0 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr11--chr6]],translocation CD44 NA OFCC1 NA TumorSuppressorGene, Oncogene NA NA NA NA +11:35190065 6:9845593 CD44--OFCC1 BS_KE56MMY0 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr11--chr6]],translocation CD44 NA OFCC1 NA TumorSuppressorGene, Oncogene NA NA NA NA +6:44424583 6:50587685 CDC5L--AL135908.1 BS_KE56MMY0 ARRIBA frameshift 17 0 medium [INTRACHROMOSOMAL[chr6:6.14Mb]],inversion CDC5L NA AL135908.1 NA TranscriptionFactor NA NA NA NA +6:44424583 6:50587685 CDC5L--AL135908.1 BS_KE56MMY0 STARFUSION other 31 2 NA [INTRACHROMOSOMAL[chr6:6.14Mb]] CDC5L NA AL135908.1 NA TranscriptionFactor NA NA NA NA +11:47552992 6:36354687 CELF1--ETV7 BS_KE56MMY0 STARFUSION other 22 0 NA [INTERCHROMOSOMAL[chr11--chr6]] CELF1 NA ETV7 NA NA TranscriptionFactor NA NA NA +6:36740939 6:50587685 CPNE5--AL135908.1 BS_KE56MMY0 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:13.75Mb]],inversion/3'-3' CPNE5 NA AL135908.1 NA NA NA NA NA NA +1:162655374 1:161943984 DDR2--ATF6 BS_KE56MMY0 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr1:0.67Mb]],inversion/3'-3' DDR2 NA ATF6 NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase TranscriptionFactor NA NA NA +22:36523209 22:38784255 EIF3D--DNAL4 BS_KE56MMY0 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr22:2.25Mb]],duplication EIF3D NA DNAL4 NA NA Oncogene NA NA NA +22:36523209 22:38785997 EIF3D--DNAL4 BS_KE56MMY0 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr22:2.25Mb]],duplication EIF3D NA DNAL4 NA NA Oncogene NA NA NA +22:36523209 22:38784255 EIF3D--SUN2 BS_KE56MMY0 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr22:2.21Mb]],duplication EIF3D NA SUN2 NA NA NA NA NA NA +11:32596047 14:42727611 EIF3M--AL442163.1(23956)/AL356800.1(79767) BS_KE56MMY0 ARRIBA frameshift 4 0 medium [],translocation EIF3M NA AL442163.1 AL356800.1 NA NA NA NA NA +3:9986507 5:16183723 EMC3--AC092335.1 BS_KE56MMY0 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr3--chr5]],translocation EMC3 NA AC092335.1 NA NA NA NA NA NA +1:161513708 1:156647113 FCGR2A--BCAN BS_KE56MMY0 ARRIBA other 7 0 medium [INTRACHROMOSOMAL[chr1:4.85Mb]],duplication FCGR2A NA BCAN NA NA NA NA NA NA +1:153922733 1:165871652 GATAD2B--UCK2 BS_KE56MMY0 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr1:11.90Mb]],duplication/5'-5' GATAD2B NA UCK2 NA TranscriptionFactor NA NA NA NA +7:18162349 7:23152067 HDAC9--KLHL7 BS_KE56MMY0 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:4.10Mb]],deletion HDAC9 NA KLHL7 NA NA NA NA NA NA +7:18162349 7:23140769 HDAC9--KLHL7 BS_KE56MMY0 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:4.10Mb]],deletion HDAC9 NA KLHL7 NA NA NA NA NA NA +14:31156840 11:36888912 HECTD1--AC104042.1(191045)/SNORA31(813213) BS_KE56MMY0 ARRIBA frameshift 3 1 high [],translocation HECTD1 NA AC104042.1 SNORA31 NA NA NA NA NA +6:17987054 3:83273102 KIF13A--CYP51A1P1(465081)/SRRM1P2(663943) BS_KE56MMY0 ARRIBA frameshift 3 0 medium [],translocation KIF13A NA CYP51A1P1 SRRM1P2 NA NA NA NA NA +7:23165938 7:18162229 KLHL7--HDAC9 BS_KE56MMY0 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr7:4.10Mb]],duplication KLHL7 NA HDAC9 NA NA NA NA NA NA +6:33782564 6:39792493 LEMD2--DAAM2 BS_KE56MMY0 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr6:6.00Mb]],duplication/5'-5' LEMD2 NA DAAM2 NA NA NA NA NA NA +5:78510088 5:1295994 LHFPL2--TERT(925)/MIR4457(13316) BS_KE56MMY0 ARRIBA frameshift 19 0 medium [],deletion LHFPL2 NA TERT MIR4457 NA CosmicCensus, Oncogene, Oncogene NA NA NA +5:12595778 3:167282495 LINC01194--ZBBX BS_KE56MMY0 ARRIBA other 7 0 high [INTERCHROMOSOMAL[chr5--chr3]],translocation LINC01194 NA ZBBX NA NA NA NA NA NA +5:12595778 3:167298458 LINC01194--ZBBX BS_KE56MMY0 ARRIBA other 6 0 high [INTERCHROMOSOMAL[chr5--chr3]],translocation LINC01194 NA ZBBX NA NA NA NA NA NA +5:12575052 3:167282495 LINC01194--ZBBX BS_KE56MMY0 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr5--chr3]],translocation LINC01194 NA ZBBX NA NA NA NA NA NA +3:27824748 1:167365467 LINC01980--POU2F1 BS_KE56MMY0 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr3--chr1]],translocation LINC01980 NA POU2F1 NA NA TranscriptionFactor NA NA NA +1:156083184 1:244218787 LMNA--AL590483.2(109776)/C1orf100(133848) BS_KE56MMY0 ARRIBA other 6 0 high [],inversion LMNA NA AL590483.2 C1orf100 CosmicCensus NA NA NA NA +1:156500486 1:178869223 MEF2D--ANGPTL1 BS_KE56MMY0 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr1:22.35Mb]],duplication MEF2D NA ANGPTL1 NA Oncogene, TranscriptionFactor NA NA NA NA +1:156500486 1:178870874 MEF2D--ANGPTL1 BS_KE56MMY0 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr1:22.35Mb]],duplication MEF2D NA ANGPTL1 NA Oncogene, TranscriptionFactor NA NA NA NA +3:158809287 3:162204737 MFSD1--AC131211.1(382829)/TOMM22P6(281804) BS_KE56MMY0 ARRIBA frameshift 2 1 high [],deletion MFSD1 NA AC131211.1 TOMM22P6 NA NA NA NA NA +14:37247907 11:40714009 MIPOL1--LRRC4C BS_KE56MMY0 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr14--chr11]],translocation/5'-5' MIPOL1 NA LRRC4C NA NA NA NA NA NA +1:167935733 1:150535968 MPC2--FALEC(17936)/AL356356.1(12594) BS_KE56MMY0 ARRIBA frameshift 3 0 medium [],deletion MPC2 NA FALEC AL356356.1 NA NA NA NA NA +5:16248166 5:16183723 NACAP6(55457)/LINC02150(125195)--AC092335.1 BS_KE56MMY0 ARRIBA other 5 0 medium [],duplication NACAP6 LINC02150 AC092335.1 NA NA NA NA NA NA +6:44258977 3:120200166 NFKBIE--GPR156 BS_KE56MMY0 ARRIBA frameshift 5 0 low [INTERCHROMOSOMAL[chr6--chr3]],translocation NFKBIE NA GPR156 NA CosmicCensus, Oncogene NA NA NA NA +14:31565048 14:43995843 NUBPL--LINC02307 BS_KE56MMY0 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr14:12.13Mb]],inversion NUBPL NA LINC02307 NA NA NA NA NA NA +11:47847848 11:89113533 NUP160--GRM5 BS_KE56MMY0 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr11:40.66Mb]],duplication NUP160 NA GRM5 NA NA NA NA NA NA +11:47847848 11:89113533 NUP160--GRM5(47588)/TYR(63919) BS_KE56MMY0 ARRIBA frameshift 3 0 medium [],duplication NUP160 NA GRM5 TYR NA NA NA NA NA +11:3797400 6:44262662 NUP98--NFKBIE BS_KE56MMY0 ARRIBA other 5 1 high [INTERCHROMOSOMAL[chr11--chr6]],translocation NUP98 NA NFKBIE NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +11:3797400 6:44260539 NUP98--NFKBIE BS_KE56MMY0 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr11--chr6]],translocation NUP98 NA NFKBIE NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +6:9842516 11:35219316 OFCC1--CD44 BS_KE56MMY0 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr6--chr11]],translocation OFCC1 NA CD44 NA NA TumorSuppressorGene, Oncogene NA NA NA +11:12377783 11:17052032 PARVA--OR7E14P BS_KE56MMY0 ARRIBA frameshift 12 0 high [INTRACHROMOSOMAL[chr11:4.48Mb]],deletion PARVA NA OR7E14P NA NA NA NA NA NA +11:12377783 11:17052032 PARVA--OR7E14P BS_KE56MMY0 STARFUSION other 12 0 NA [INTRACHROMOSOMAL[chr11:4.48Mb]] PARVA NA OR7E14P NA NA NA NA NA NA +1:151326172 1:155439068 PI4KB--ASH1L BS_KE56MMY0 ARRIBA frameshift 7 2 high [INTRACHROMOSOMAL[chr1:4.01Mb]],duplication PI4KB NA ASH1L NA Kinase TranscriptionFactor NA NA NA +1:151327271 1:155439068 PI4KB--ASH1L BS_KE56MMY0 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr1:4.01Mb]],duplication PI4KB NA ASH1L NA Kinase TranscriptionFactor NA NA NA +19:55186231 5:24651625 PTPRH--CDH10(6647)/AC091893.1(97749) BS_KE56MMY0 ARRIBA frameshift 7 2 medium [],translocation PTPRH NA CDH10 AC091893.1 Oncogene CosmicCensus, Oncogene NA NA NA +3:49033230 3:52398331 QRICH1--DNAH1 BS_KE56MMY0 ARRIBA other 16 1 medium [INTRACHROMOSOMAL[chr3:3.22Mb]],duplication/5'-5' QRICH1 NA DNAH1 NA NA NA NA NA NA +17:5308822 10:26533439 RABEP1--APBB1IP BS_KE56MMY0 ARRIBA frameshift 34 2 high [INTERCHROMOSOMAL[chr17--chr10]],translocation RABEP1 NA APBB1IP NA CosmicCensus, Oncogene NA NA NA NA +17:5308822 10:26533439 RABEP1--APBB1IP BS_KE56MMY0 STARFUSION frameshift 36 2 NA [INTERCHROMOSOMAL[chr17--chr10]] RABEP1 NA APBB1IP NA CosmicCensus, Oncogene NA NA NA NA +3:12663813 5:9337812 RAF1--SEMA5A BS_KE56MMY0 ARRIBA other 7 0 high [INTERCHROMOSOMAL[chr3--chr5]],translocation RAF1 NA SEMA5A NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +1:178725419 1:170719726 RALGPS2--PRRX1 BS_KE56MMY0 ARRIBA other 16 0 medium [INTRACHROMOSOMAL[chr1:7.99Mb]],duplication RALGPS2 NA PRRX1 NA Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +1:178725419 1:170719726 RALGPS2--PRRX1 BS_KE56MMY0 STARFUSION other 16 0 NA [INTRACHROMOSOMAL[chr1:7.99Mb]] RALGPS2 NA PRRX1 NA Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +3:49411820 3:112965091 RHOA--CD200R1 BS_KE56MMY0 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr3:63.51Mb]],inversion/5'-5' RHOA NA CD200R1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +5:39074111 11:30287524 RICTOR--FSHB(52263)/ARL14EP(35527) BS_KE56MMY0 ARRIBA frameshift 2 0 medium [],translocation RICTOR NA FSHB ARL14EP NA NA NA NA NA +5:39074111 5:28761600 RICTOR--RNU6-909P(136837)/AC008825.1(21078) BS_KE56MMY0 ARRIBA frameshift 2 0 medium [],inversion RICTOR NA RNU6-909P AC008825.1 NA NA NA NA NA +6:43670918 6:36572072 RSPH9--STK38(24602)/SRSF3(22281) BS_KE56MMY0 ARRIBA other 21 0 low [],inversion RSPH9 NA STK38 SRSF3 NA Kinase NA CosmicCensus, Oncogene NA +5:9197168 1:156154550 SEMA5A--SEMA4A BS_KE56MMY0 ARRIBA frameshift 6 0 high [HGNC_GENEFAM,INTERCHROMOSOMAL[chr5--chr1]],translocation SEMA5A NA SEMA4A NA NA NA NA NA NA +16:3588760 16:24219961 SLX4--PRKCB BS_KE56MMY0 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr16:20.22Mb]],deletion/3'-3' SLX4 NA PRKCB NA TumorSuppressorGene TumorSuppressorGene, CosmicCensus, Kinase NA NA NA +1:156272320 1:162755756 SMG5--DDR2 BS_KE56MMY0 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:6.35Mb]],duplication/5'-5' SMG5 NA DDR2 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA +1:245988394 1:150912242 SMYD3--AL355860.1 BS_KE56MMY0 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr1:94.84Mb]],inversion SMYD3 NA AL355860.1 NA Oncogene, TranscriptionFactor NA NA NA NA +6:43178812 16:18559571 SRF--NOMO2 BS_KE56MMY0 ARRIBA frameshift 3 1 medium [INTERCHROMOSOMAL[chr6--chr16]],translocation/5'-5' SRF NA NOMO2 NA TranscriptionFactor NA NA NA NA +11:8726073 11:1160612 ST5--MUC5AC BS_KE56MMY0 ARRIBA in-frame 11 0 high [INTRACHROMOSOMAL[chr11:7.49Mb]],inversion ST5 NA MUC5AC NA TumorSuppressorGene, Oncogene Oncogene NA NA NA +11:8726073 11:1160612 ST5--MUC5AC BS_KE56MMY0 STARFUSION in-frame 11 0 NA [INTRACHROMOSOMAL[chr11:7.49Mb]] ST5 NA MUC5AC NA TumorSuppressorGene, Oncogene Oncogene NA NA NA +17:601795 10:122021937 VPS53--TACC2 BS_KE56MMY0 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr17--chr10]],translocation VPS53 NA TACC2 NA TumorSuppressorGene NA NA NA NA +5:113691154 5:34950170 YTHDC2(95869)/AC106789.1(364852)--DNAJC21 BS_KE56MMY0 ARRIBA other 4 0 medium [],duplication YTHDC2 AC106789.1 DNAJC21 NA NA NA NA NA NA +3:115023025 3:113165206 ZBTB20--LINC02044 BS_KE56MMY0 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr3:1.15Mb]],inversion/3'-3' ZBTB20 NA LINC02044 NA TranscriptionFactor NA NA NA NA +6:37820016 6:43936364 ZFAND3--AL157371.1(84031)/AL109615.3(59359) BS_KE56MMY0 ARRIBA frameshift 14 1 high [],deletion ZFAND3 NA AL157371.1 AL109615.3 NA NA NA NA NA +16:3126178 7:99558358 ZNF213-AS1--FAM200A BS_KE56MMY0 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr16--chr7]],translocation ZNF213-AS1 NA FAM200A NA NA NA NA NA NA +6:52995911 14:49862666 7SK--RN7SL2 BS_KEA474HN STARFUSION other 5 9 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KEA474HN ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KEA474HN ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_KEA474HN ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +8:61376779 8:61299677 CLVS1--CLVS1 BS_KEA474HN ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.44Mb]],duplication/non-canonical_splicing CLVS1 NA CLVS1 NA NA NA NA NA NA +7:138844317 7:140783157 KIAA1549--BRAF BS_KEA474HN ARRIBA in-frame 21 7 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138844317 7:140783157 KIAA1549--BRAF BS_KEA474HN STARFUSION in-frame 21 7 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +18:6973057 18:6980637 LAMA1--LAMA1 BS_KEA474HN ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA +2:1839149 2:1892287 MYT1L--MYT1L BS_KEA474HN ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_KEA474HN ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KEA474HN ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:64590223 6:64593309 EYS--EYS BS_KF0ZXDER ARRIBA frameshift 13 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +11:104421369 11:104873256 MIR7641-1(168718)/LINC02552(24499)--AP002004.2 BS_KF0ZXDER ARRIBA other 2 1 medium [],deletion MIR7641-1 LINC02552 AP002004.2 NA NA NA NA NA NA +10:94032252 10:94005450 PLCE1--PIPSL(43910)/PLCE1(25362) BS_KF0ZXDER ARRIBA frameshift 1 1 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +8:27987504 3:54503492 SCARA5--CACNA2D3 BS_KF0ZXDER ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr8--chr3]],translocation SCARA5 NA CACNA2D3 NA NA TumorSuppressorGene NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_KF0ZXDER ARRIBA other 3 2 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +6:52995831 14:49586762 7SK--AL139099.5 BS_KK5C8VCK STARFUSION other 5 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL139099.5 NA NA NA NA NA NA +6:52995911 14:49586763 7SK--AL139099.5 BS_KK5C8VCK STARFUSION other 5 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL139099.5 NA NA NA NA NA NA +6:52995859 14:49586762 7SK--AL139099.5 BS_KK5C8VCK STARFUSION other 4 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL139099.5 NA NA NA NA NA NA +6:52995826 14:49586759 7SK--RN7SL1 BS_KK5C8VCK STARFUSION other 6 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL1 NA NA NA NA NA NA +6:52995911 14:49586763 7SK--RN7SL1 BS_KK5C8VCK STARFUSION other 5 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL1 NA NA NA NA NA NA +6:52995907 14:49586590 7SK--RN7SL1 BS_KK5C8VCK STARFUSION other 4 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL1 NA NA NA NA NA NA +6:52995858 14:49586764 7SK--RN7SL1 BS_KK5C8VCK STARFUSION other 4 10 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KK5C8VCK ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KK5C8VCK ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:9189586 8:9167773 AC022784.1--AC022784.3 BS_KK5C8VCK ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:0.02Mb],LOCAL_REARRANGEMENT:+:[20875]],duplication AC022784.1 NA AC022784.3 NA NA NA NA NA NA +6:146802011 6:146782020 ADGB--ADGB BS_KK5C8VCK ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +X:35956196 X:35941283 CFAP47--CFAP47 BS_KK5C8VCK ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +20:32931336 20:32917301 EFCAB8--EFCAB8 BS_KK5C8VCK ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr20:0.10Mb]],duplication/non-canonical_splicing EFCAB8 NA EFCAB8 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_KK5C8VCK ARRIBA other 2 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +14:60019260 14:59997656 LRRC9--LRRC9 BS_KK5C8VCK ARRIBA frameshift 21 5 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +2:131613103 2:131575035 POTEKP--MED15P4(38047)/POTEKP(16717) BS_KK5C8VCK ARRIBA other 3 0 medium [],duplication POTEKP NA MED15P4 POTEKP NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KK5C8VCK ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:64766726 14:64779931 SPTB--SPTB BS_KK5C8VCK ARRIBA in-frame 41 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing SPTB NA SPTB NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KM2EX0K6 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KM2EX0K6 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:60726410 1:60733522 AC099792.1--AC099792.1 BS_KM2EX0K6 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing AC099792.1 NA AC099792.1 NA NA NA NA NA NA +18:79253541 18:79193183 ATP9B--ATP9B BS_KM2EX0K6 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_KM2EX0K6 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_KM2EX0K6 ARRIBA in-frame 15 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +6:132134483 6:132090446 LINC01013--AL021408.1 BS_KM2EX0K6 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KM2EX0K6 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KN92S7YQ ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KN92S7YQ ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:20343086 14:49862664 AL355075.4--RN7SL2 BS_KN92S7YQ STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] AL355075.4 NA RN7SL2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_KN92S7YQ ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +5:34108948 5:34169153 C1QTNF3-AMACR--AC138409.2 BS_KN92S7YQ ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[40170]],duplication C1QTNF3-AMACR NA AC138409.2 NA NA NA NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_KN92S7YQ ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_KN92S7YQ ARRIBA frameshift 12 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +18:42454989 18:42453932 LINC00907--LINC00907 BS_KN92S7YQ ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.53Mb]],duplication/non-canonical_splicing LINC00907 NA LINC00907 NA NA NA NA NA NA +10:94171496 10:94030683 PLCE1--PIPSL(69143)/PLCE1(129) BS_KN92S7YQ ARRIBA frameshift 2 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_KN92S7YQ ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +14:20343089 14:49862668 RPPH1--RN7SL2 BS_KN92S7YQ STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RPPH1 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KN92S7YQ ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_KN92S7YQ ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +19:20167212 17:16153476 ZNF486--NCOR1 BS_KN92S7YQ ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr19--chr17]],translocation/3'-3' ZNF486 NA NCOR1 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA +1:244432545 1:89205784 ADSS--AC099063.4 BS_KND4B5CW ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:155.20Mb]],inversion ADSS NA AC099063.4 NA NA NA NA NA NA +7:149875645 7:116633762 ATP6V0E2--LINC01510(18942)/MET(38628) BS_KND4B5CW ARRIBA frameshift 2 0 high [],inversion ATP6V0E2 NA LINC01510 MET NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA +14:28724268 14:28738844 AL121766.1(50541)/FOXG1-AS1(4815)--FOXG1-AS1 BS_KP735TJ6 ARRIBA other 4 0 high [],duplication AL121766.1 FOXG1-AS1 FOXG1-AS1 NA NA NA NA NA NA +1:154158957 1:156875192 TPM3--NTRK1 BS_KP735TJ6 ARRIBA frameshift 5 1 medium [HaasMedCancer,Klijn_CellLines,chimerdb_pubmed,CCLE,FA_CancerSupp,ChimerKB,ChimerSeq,ChimerPub,Cosmic,INTRACHROMOSOMAL[chr1:2.62Mb]],inversion TPM3 NA NTRK1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +1:154169305 1:156875520 TPM3--NTRK1 BS_KP735TJ6 ARRIBA frameshift 3 0 medium [HaasMedCancer,Klijn_CellLines,chimerdb_pubmed,CCLE,FA_CancerSupp,ChimerKB,ChimerSeq,ChimerPub,Cosmic,INTRACHROMOSOMAL[chr1:2.62Mb]],inversion TPM3 NA NTRK1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +1:154552735 5:154840651 UBE2Q1--FAXDC2 BS_KP735TJ6 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr1--chr5]],translocation UBE2Q1 NA FAXDC2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KPT2WPHW ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KPT2WPHW ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_KPT2WPHW ARRIBA other 6 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_KPT2WPHW ARRIBA frameshift 13 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_KPT2WPHW ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_KPT2WPHW ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_KPT2WPHW ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_KPT2WPHW ARRIBA frameshift 27 5 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211082898 AL590132.1--KCNH1 BS_KPT2WPHW ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_KPT2WPHW ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_KPT2WPHW ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_KPT2WPHW ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_KPT2WPHW ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +18:79307234 18:79193183 ATP9B--ATP9B BS_KPT2WPHW ARRIBA frameshift 13 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +4:6007996 4:6011968 C4orf50--C4orf50 BS_KPT2WPHW ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing C4orf50 NA C4orf50 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_KPT2WPHW ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +16:61817479 16:61825179 CDH8--CDH8 BS_KPT2WPHW ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.39Mb]],duplication/non-canonical_splicing CDH8 NA CDH8 NA NA NA NA NA NA +3:2903005 3:2883145 CNTN4--CNTN4 BS_KPT2WPHW ARRIBA in-frame 6 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_KPT2WPHW ARRIBA in-frame 18 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +4:150239875 4:150203795 DCLK2--DCLK2 BS_KPT2WPHW ARRIBA frameshift 15 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.18Mb]],duplication/non-canonical_splicing DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_KPT2WPHW ARRIBA frameshift 13 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_KPT2WPHW ARRIBA in-frame 157 18 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:74492266 1:74439490 FPGT-TNNI3K--FPGT-TNNI3K BS_KPT2WPHW ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_KPT2WPHW ARRIBA frameshift 19 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_KPT2WPHW ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +16:71162531 1:148206633 HYDIN--AC239809.3 BS_KPT2WPHW ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr16--chr1]],translocation HYDIN NA AC239809.3 NA NA NA NA NA NA +16:71018129 1:148217130 HYDIN--AC239809.3 BS_KPT2WPHW ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr16--chr1]],translocation HYDIN NA AC239809.3 NA NA NA NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_KPT2WPHW ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_KPT2WPHW ARRIBA frameshift 13 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_KPT2WPHW ARRIBA frameshift 27 5 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_KPT2WPHW ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_KPT2WPHW ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_KPT2WPHW ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_KPT2WPHW ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_KPT2WPHW ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_KPT2WPHW ARRIBA in-frame 3 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211082898 KCNH1--AL590132.1 BS_KPT2WPHW ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_KPT2WPHW ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_KPT2WPHW ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_KPT2WPHW ARRIBA frameshift 27 5 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_KPT2WPHW ARRIBA frameshift 19 5 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_KPT2WPHW ARRIBA frameshift 17 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +1:149607554 1:120556551 LINC00869--AC241952.1 BS_KPT2WPHW ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr1:28.91Mb]],duplication/5'-5' LINC00869 NA AC241952.1 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_KPT2WPHW ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_KPT2WPHW ARRIBA frameshift 17 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +14:46920012 14:47035304 MDGA2--MDGA2 BS_KPT2WPHW ARRIBA frameshift 16 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +8:74612940 8:74500513 MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_KPT2WPHW ARRIBA other 3 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_KPT2WPHW ARRIBA other 3 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +6:61606290 6:61661364 MTRNR2L9(31888)/AL049544.1(23943)--AL049544.1 BS_KPT2WPHW ARRIBA other 3 1 medium [],duplication MTRNR2L9 AL049544.1 AL049544.1 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_KPT2WPHW ARRIBA other 9 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_KPT2WPHW ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_KPT2WPHW ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +12:44665484 12:44714741 NELL2--NELL2 BS_KPT2WPHW ARRIBA in-frame 12 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +6:165379194 6:165388453 PDE10A--PDE10A BS_KPT2WPHW ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA +7:92492286 7:92457552 PEX1--GATAD1 BS_KPT2WPHW ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:0.03Mb],LOCAL_INVERSION:-:+:[28184]],duplication/3'-3' PEX1 NA GATAD1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_KPT2WPHW ARRIBA in-frame 36 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +7:39340015 7:39318215 POU6F2--POU6F2 BS_KPT2WPHW ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_KPT2WPHW ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KPT2WPHW ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_KPT2WPHW ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_KPT2WPHW ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +1:74492266 1:74439490 TNNI3K--TNNI3K BS_KPT2WPHW ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.31Mb]],duplication/non-canonical_splicing TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_KPT2WPHW ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KQ6ZW085 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KQ6ZW085 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_KQ6ZW085 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_KQ6ZW085 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_KQ6ZW085 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_KQ6ZW085 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_KQ6ZW085 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_KQ6ZW085 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_KQ6ZW085 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_KQ6ZW085 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_KQ6ZW085 ARRIBA in-frame 34 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_KQ6ZW085 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_KQ6ZW085 STARFUSION other 5 14 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_KQ6ZW085 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_KQ6ZW085 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_KQ6ZW085 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_KQ6ZW085 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_KQ6ZW085 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_KQ6ZW085 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_KQ6ZW085 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_KQ6ZW085 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_KQ6ZW085 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_KQ6ZW085 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KQ6ZW085 ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995909 14:20343396 7SK--AL355075.4 BS_KR4MP5ET STARFUSION other 5 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL355075.4 NA NA NA NA NA NA +6:52995911 14:20343396 7SK--RPPH1 BS_KR4MP5ET STARFUSION other 5 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RPPH1 NA NA NA NA NA NA +1:84620757 1:117946086 CTBS(46277)/LINC01555(7473)--WDR3 BS_KR4MP5ET ARRIBA other 3 0 medium [],inversion CTBS LINC01555 WDR3 NA NA NA NA NA NA +11:126229293 11:102263828 FAM118B--YAP1(30405)/AP000942.1(31232) BS_KR4MP5ET ARRIBA other 4 0 medium [],duplication FAM118B NA YAP1 AP000942.1 NA TumorSuppressorGene, Oncogene NA NA NA +11:125235115 11:78443648 PKNOX2--AP003086.2 BS_KR4MP5ET ARRIBA other 14 0 medium [INTRACHROMOSOMAL[chr11:46.72Mb]],duplication PKNOX2 NA AP003086.2 NA TranscriptionFactor NA NA NA NA +11:125235115 11:78443648 PKNOX2--AP003086.2 BS_KR4MP5ET STARFUSION other 14 0 NA [INTRACHROMOSOMAL[chr11:46.72Mb]] PKNOX2 NA AP003086.2 NA TranscriptionFactor NA NA NA NA +11:75912039 11:109365068 UVRAG--AP003049.2 BS_KR4MP5ET ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr11:33.21Mb]],inversion UVRAG NA AP003049.2 NA TumorSuppressorGene NA NA NA NA +11:75912039 11:109416171 UVRAG--AP003049.2 BS_KR4MP5ET ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr11:33.21Mb]],inversion UVRAG NA AP003049.2 NA TumorSuppressorGene NA NA NA NA +1:117936887 1:83883136 WDR3--TTLL7 BS_KR4MP5ET ARRIBA in-frame 2 0 high [INTRACHROMOSOMAL[chr1:33.93Mb]],inversion WDR3 NA TTLL7 NA NA NA NA NA NA +1:117934682 1:83870082 WDR3--TTLL7 BS_KR4MP5ET ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:33.93Mb]],inversion WDR3 NA TTLL7 NA NA NA NA NA NA +11:102223752 11:126234995 YAP1--FAM118B BS_KR4MP5ET ARRIBA in-frame 68 6 high [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA +11:102223752 11:126240792 YAP1--FAM118B BS_KR4MP5ET ARRIBA in-frame 1 1 medium [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA +11:102206074 11:126234995 YAP1--FAM118B BS_KR4MP5ET ARRIBA frameshift 1 0 low [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA +11:102223752 11:126234995 YAP1--FAM118B BS_KR4MP5ET STARFUSION other 69 6 NA [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]] YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KSKZ9J7J ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KSKZ9J7J ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:139648845 22:27751096 CXXC5--MN1 BS_KSKZ9J7J ARRIBA other 9 0 high [INTERCHROMOSOMAL[chr5--chr22]],translocation CXXC5 NA MN1 NA TumorSuppressorGene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA +5:139648845 22:27751096 CXXC5--MN1 BS_KSKZ9J7J STARFUSION other 9 0 NA [INTERCHROMOSOMAL[chr5--chr22]] CXXC5 NA MN1 NA TumorSuppressorGene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA +22:27796763 5:139721903 MN1--AC008667.1 BS_KSKZ9J7J ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr22--chr5]],translocation MN1 NA AC008667.1 NA CosmicCensus, Oncogene NA NA NA NA +22:27796763 5:139681203 MN1--CXXC5 BS_KSKZ9J7J ARRIBA in-frame 78 15 high [INTERCHROMOSOMAL[chr22--chr5]],translocation MN1 NA CXXC5 NA CosmicCensus, Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA +22:27796763 5:139682863 MN1--CXXC5 BS_KSKZ9J7J ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr22--chr5]],translocation MN1 NA CXXC5 NA CosmicCensus, Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA +22:27796763 5:139681203 MN1--CXXC5 BS_KSKZ9J7J STARFUSION in-frame 80 15 NA [INTERCHROMOSOMAL[chr22--chr5]] MN1 NA CXXC5 NA CosmicCensus, Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA +22:27796763 5:139809391 MN1--PSD2 BS_KSKZ9J7J ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr22--chr5]],translocation MN1 NA PSD2 NA CosmicCensus, Oncogene NA NA NA NA +19:893592 11:62665431 RNU6-9--METTL12 BS_KSKZ9J7J STARFUSION other 15 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--SNORA57 BS_KSKZ9J7J STARFUSION other 15 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KSKZ9J7J ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KVAJYZ6F ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KVAJYZ6F ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:66689047 9:105438281 PRKCA--SLC44A1 BS_KVAJYZ6F ARRIBA in-frame 33 5 high [INTERCHROMOSOMAL[chr17--chr9]],translocation PRKCA NA SLC44A1 NA Kinase NA NA NA NA +17:66688436 9:105438281 PRKCA--SLC44A1 BS_KVAJYZ6F ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr17--chr9]],translocation PRKCA NA SLC44A1 NA Kinase NA NA NA NA +17:66689047 9:105438281 PRKCA--SLC44A1 BS_KVAJYZ6F STARFUSION in-frame 34 6 NA [INTERCHROMOSOMAL[chr17--chr9]] PRKCA NA SLC44A1 NA Kinase NA NA NA NA +3:181231845 6:159780370 RNU6-4P--SNORA20 BS_KVAJYZ6F STARFUSION other 12 0 NA [INTERCHROMOSOMAL[chr3--chrY]] RNU6-4P NA SNORA20 NA NA NA NA NA NA +19:893593 11:62665431 RNU6-9--METTL12 BS_KVAJYZ6F STARFUSION other 13 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--SNORA57 BS_KVAJYZ6F STARFUSION other 13 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KVAJYZ6F ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:105385502 17:66732688 SLC44A1--PRKCA BS_KVAJYZ6F ARRIBA in-frame 158 31 high [ChimerPub,Mitelman,INTERCHROMOSOMAL[chr9--chr17]],translocation SLC44A1 NA PRKCA NA NA Kinase NA NA NA +9:105385502 17:66732688 SLC44A1--PRKCA BS_KVAJYZ6F STARFUSION in-frame 159 31 NA [ChimerPub,Mitelman,INTERCHROMOSOMAL[chr9--chr17]] SLC44A1 NA PRKCA NA NA Kinase NA NA NA +3:117997182 3:117465493 AC092691.1--LSAMP(326104)/RNU6-1200P(78712) BS_KVNGNETA ARRIBA other 2 0 medium [],deletion AC092691.1 NA LSAMP RNU6-1200P NA TumorSuppressorGene NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_KVNGNETA STARFUSION other 15 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_KVNGNETA ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +20:46474501 20:46506458 AL031686.1--ZNF334 BS_KVNGNETA ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46485529 20:46506458 AL031686.1--ZNF334 BS_KVNGNETA ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46485529 20:46504740 AL031686.1--ZNF334 BS_KVNGNETA ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +14:34909043 14:34921713 AL121603.2(32584)/SRP54-AS1(11815)--SRP54-AS1 BS_KVNGNETA ARRIBA other 1 0 low [],duplication AL121603.2 SRP54-AS1 SRP54-AS1 NA NA NA NA NA NA +5:82543454 5:83104910 ATP6AP1L(156477)/AC026782.1(2408)--XRCC4 BS_KVNGNETA ARRIBA other 2 1 high [],deletion ATP6AP1L AC026782.1 XRCC4 NA NA NA NA NA NA +13:25564031 13:25529999 ATP8A2--ATP8A2 BS_KVNGNETA ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +3:37416724 3:37379042 C3orf35--GOLGA4(12291)/C3orf35(7227) BS_KVNGNETA ARRIBA other 1 1 high [],duplication C3orf35 NA GOLGA4 C3orf35 NA NA NA NA NA +6:22110920 6:21909470 CASC15--CASC15 BS_KVNGNETA ARRIBA other 13 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.70Mb]],duplication/non-canonical_splicing CASC15 NA CASC15 NA NA NA NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_KVNGNETA ARRIBA frameshift 14 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_KVNGNETA ARRIBA frameshift 164 16 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +X:152345581 X:152458262 GABRA3--GABRA3(6904)/KRT8P8(21315) BS_KVNGNETA ARRIBA frameshift 2 0 medium [],duplication GABRA3 NA GABRA3 KRT8P8 NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_KVNGNETA ARRIBA frameshift 12 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +10:25594397 10:25466651 GPR158--GPR158 BS_KVNGNETA ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.43Mb]],duplication/non-canonical_splicing GPR158 NA GPR158 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_KVNGNETA ARRIBA frameshift 12 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +18:41516420 18:41525526 KC6--KC6 BS_KVNGNETA ARRIBA other 17 2 low [SELFIE,INTRACHROMOSOMAL[chr18:0.17Mb]],duplication/non-canonical_splicing KC6 NA KC6 NA NA NA NA NA NA +8:132170333 8:132186180 KCNQ3--KCNQ3 BS_KVNGNETA ARRIBA in-frame 15 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.36Mb]],duplication/non-canonical_splicing KCNQ3 NA KCNQ3 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_KVNGNETA ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +17:21091179 17:21090268 LINC01563(564)/DHRS7B(32185)--LINC01563 BS_KVNGNETA ARRIBA other 3 0 low [],duplication LINC01563 DHRS7B LINC01563 NA NA NA NA NA NA +5:6337150 5:6372601 LINC02145--MED10 BS_KVNGNETA ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr5:0.03Mb],LOCAL_REARRANGEMENT:-:[31997]],duplication LINC02145 NA MED10 NA NA NA NA NA NA +3:183276872 3:183318217 MCF2L2--MCF2L2 BS_KVNGNETA ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing MCF2L2 NA MCF2L2 NA NA NA NA NA NA +12:132148895 X:153673078 NOC4L--PNCK BS_KVNGNETA ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr12--chrX]],translocation NOC4L NA PNCK NA NA Kinase NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_KVNGNETA ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +15:75943572 15:76011286 NRG4--NRG4 BS_KVNGNETA ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +2:50465442 2:50620183 NRXN1--NRXN1 BS_KVNGNETA ARRIBA frameshift 39 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:1.31Mb]],duplication/non-canonical_splicing NRXN1 NA NRXN1 NA NA NA NA NA NA +10:53938815 10:54023197 PCDH15--PCDH15 BS_KVNGNETA ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr10:1.83Mb]],duplication/non-canonical_splicing PCDH15 NA PCDH15 NA NA NA NA NA NA +5:103485744 5:103530408 PDZPH1P--LINC02115 BS_KVNGNETA ARRIBA other 5 2 high [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[1816]],duplication PDZPH1P NA LINC02115 NA NA NA NA NA NA +5:103526115 5:103530408 PDZPH1P--LINC02115 BS_KVNGNETA ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[1816]],duplication PDZPH1P NA LINC02115 NA NA NA NA NA NA +7:77951712 7:77920279 PHTF2--PHTF2 BS_KVNGNETA ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_KVNGNETA ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +7:39086031 7:38986246 POU6F2--POU6F2 BS_KVNGNETA ARRIBA frameshift 22 0 high [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +12:62689699 12:62720289 PPM1H--PPM1H BS_KVNGNETA ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.29Mb]],duplication/non-canonical_splicing PPM1H NA PPM1H NA NA NA NA NA NA +2:119946574 2:119926598 PTPN4--PTPN4 BS_KVNGNETA ARRIBA frameshift 9 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.22Mb]],duplication/non-canonical_splicing PTPN4 NA PTPN4 NA NA NA NA NA NA +18:41408369 18:41501276 RPL17P45(1263865)/KC6(57414)--KC6 BS_KVNGNETA ARRIBA other 4 0 high [],duplication RPL17P45 KC6 KC6 NA NA NA NA NA NA +4:25776277 4:25822128 SEL1L3--SEL1L3 BS_KVNGNETA ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing SEL1L3 NA SEL1L3 NA NA NA NA NA NA +12:21250478 12:21275424 SLCO1B1(11232)/SLCO1A2(14122)--SLCO1A2 BS_KVNGNETA ARRIBA other 4 0 high [],duplication SLCO1B1 SLCO1A2 SLCO1A2 NA NA NA NA NA NA +2:951068 2:155417416 SNTG2--RNU6-546P(86889)/LINC01876(594114) BS_KVNGNETA ARRIBA frameshift 8 0 high [],inversion SNTG2 NA RNU6-546P LINC01876 NA NA NA NA NA +10:22401277 10:22359411 SPAG6--SPAG6 BS_KVNGNETA ARRIBA frameshift 8 1 medium [SELFIE,INTRACHROMOSOMAL[chr10:0.11Mb]],duplication SPAG6 NA SPAG6 NA NA NA NA NA NA +17:49607250 16:60179868 SPOP--LINC02141(125895)/AC018554.2(177346) BS_KVNGNETA ARRIBA frameshift 9 1 high [],translocation SPOP NA LINC02141 AC018554.2 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +14:21360677 14:21324618 SUPT16H--RPGRIP1 BS_KVNGNETA ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr14:0.00Mb],LOCAL_INVERSION:-:+:[171]],duplication/3'-3' SUPT16H NA RPGRIP1 NA NA NA NA NA NA +4:103656194 4:103658403 TACR3--TACR3 BS_KVNGNETA ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA +4:16355785 4:16238771 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_KVNGNETA ARRIBA other 2 2 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:209904965 2:209877954 UNC80--UNC80 BS_KVNGNETA ARRIBA in-frame 32 8 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +19:30020219 19:29985223 URI1(3611)/AC008507.2(8522)--URI1 BS_KVNGNETA ARRIBA other 1 0 low [],duplication URI1 AC008507.2 URI1 NA NA NA NA NA NA +1:216321883 1:216327654 USH2A--USH2A BS_KVNGNETA ARRIBA frameshift 159 10 high [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KVV7001W ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KVV7001W ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_KVV7001W ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +3:178801793 3:178921943 KCNMB2-AS1--KCNMB2-AS1(61538)/ZMAT3(95280) BS_KVV7001W ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KVV7001W ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KX6J8TRK ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KX6J8TRK ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_KX6J8TRK ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_KX6J8TRK ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_KX6J8TRK ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_KX6J8TRK ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_KX6J8TRK ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_KX6J8TRK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_KX6J8TRK ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +10:132892333 10:132916682 CFAP46--CFAP46 BS_KX6J8TRK ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/non-canonical_splicing CFAP46 NA CFAP46 NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_KX6J8TRK ARRIBA frameshift 35 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +12:123859268 12:123853206 DNAH10--DNAH10 BS_KX6J8TRK ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA +17:11905809 17:11891777 DNAH9--DNAH9 BS_KX6J8TRK ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.37Mb]],duplication/non-canonical_splicing DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_KX6J8TRK ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_KX6J8TRK STARFUSION other 6 16 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_KX6J8TRK ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +7:43501322 7:43492075 HECW1--HECW1 BS_KX6J8TRK ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_KX6J8TRK ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_KX6J8TRK ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_KX6J8TRK ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_KX6J8TRK ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_KX6J8TRK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_KX6J8TRK ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_KX6J8TRK ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_KX6J8TRK ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +8:89418044 8:89725641 KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_KX6J8TRK ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +2:59022982 2:58985438 LINC01122--LINC01122 BS_KX6J8TRK ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.64Mb]],duplication LINC01122 NA LINC01122 NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_KX6J8TRK ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96920125 12:96875118 NEDD1--CFAP54 BS_KX6J8TRK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_KX6J8TRK ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +6:165379194 6:165388453 PDE10A--PDE10A BS_KX6J8TRK ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_KX6J8TRK ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +3:77602491 3:77564954 ROBO2--ROBO2 BS_KX6J8TRK ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KX6J8TRK ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +X:38054422 X:38033534 SYTL5--SYTL5 BS_KX6J8TRK ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.12Mb]],duplication/non-canonical_splicing SYTL5 NA SYTL5 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KXCY5BN5 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KXCY5BN5 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:70585875 15:70096261 LINC02204--TLE3 BS_KXCY5BN5 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:0.47Mb]],deletion LINC02204 NA TLE3 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KXCY5BN5 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_KXCY5BN5 ARRIBA other 3 0 medium [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KXH37MPN ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KXH37MPN ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_KXH37MPN ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +9:32966676 9:32989895 ASS1P12(19454)/APTX(5930)--APTX BS_KXH37MPN ARRIBA other 3 0 medium [],duplication ASS1P12 APTX APTX NA NA NA NA NA NA +5:61761022 5:61686883 C5orf64(9259)/AC026434.2(70925)--C5orf64 BS_KXH37MPN ARRIBA other 1 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_KXH37MPN ARRIBA other 13 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_KXH37MPN ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_KXH37MPN ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KXH37MPN ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KXMYBQ6N ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KXMYBQ6N ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +18:27581971 18:27142905 AC090403.1--CHST9 BS_KXMYBQ6N ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr18:0.15Mb]],deletion AC090403.1 NA CHST9 NA NA NA NA NA NA +12:106750793 12:106686884 RFX4--RFX4 BS_KXMYBQ6N ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KXMYBQ6N ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:7267442 7:7234303 AC005532.1--C1GALT1 BS_KYF0Q0E7 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KYF0Q0E7 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KYF0Q0E7 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:52392788 19:52373111 AC010332.1--ZNF880 BS_KYF0Q0E7 STARFUSION other 5 4 NA [INTRACHROMOSOMAL[chr19:0.01Mb],LOCAL_REARRANGEMENT:+:[6864]] AC010332.1 NA ZNF880 NA NA TranscriptionFactor NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_KYF0Q0E7 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +14:34916089 14:34972064 AL121603.2(39630)/SRP54-AS1(4769)--SRP54-AS1 BS_KYF0Q0E7 ARRIBA other 1 1 medium [],duplication AL121603.2 SRP54-AS1 SRP54-AS1 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_KYF0Q0E7 ARRIBA other 4 3 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +17:60689761 4:25869769 BCAS3--SEL1L3 BS_KYF0Q0E7 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr17--chr4]],translocation BCAS3 NA SEL1L3 NA Oncogene NA NA NA NA +17:60689761 4:25847864 BCAS3--SEL1L3 BS_KYF0Q0E7 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr17--chr4]],translocation BCAS3 NA SEL1L3 NA Oncogene NA NA NA NA +17:60689761 4:25835323 BCAS3--SEL1L3 BS_KYF0Q0E7 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr17--chr4]],translocation BCAS3 NA SEL1L3 NA Oncogene NA NA NA NA +17:60689761 4:25906834 BCAS3--SMIM20 BS_KYF0Q0E7 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr17--chr4]],translocation/5'-5' BCAS3 NA SMIM20 NA Oncogene NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_KYF0Q0E7 ARRIBA frameshift 30 13 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +8:10096318 21:37087247 MSRA--TTC3 BS_KYF0Q0E7 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr8--chr21]],translocation MSRA NA TTC3 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KYF0Q0E7 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KZPR01BD ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KZPR01BD ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:18195019 3:47880169 ALKBH5--MAP4 BS_KZPR01BD ARRIBA frameshift 10 1 medium [INTERCHROMOSOMAL[chr17--chr3]],translocation ALKBH5 NA MAP4 NA NA Oncogene NA NA NA +17:18195019 3:47880169 ALKBH5--MAP4 BS_KZPR01BD STARFUSION other 11 1 NA [INTERCHROMOSOMAL[chr17--chr3]] ALKBH5 NA MAP4 NA NA Oncogene NA NA NA +17:6899985 17:6892003 ALOX12P2--ALOX12P2 BS_KZPR01BD ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.10Mb]],duplication/non-canonical_splicing ALOX12P2 NA ALOX12P2 NA NA NA NA NA NA +19:584451 10:35640192 BSG(958)/HCN2(5442)--FZD8 BS_KZPR01BD ARRIBA other 2 0 medium [],translocation BSG HCN2 FZD8 NA NA NA NA NA NA +1:6825210 5:172373815 CAMTA1--SH3PXD2B BS_KZPR01BD ARRIBA frameshift 6 1 high [INTERCHROMOSOMAL[chr1--chr5]],translocation CAMTA1 NA SH3PXD2B NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +1:6825210 5:172358877 CAMTA1--SH3PXD2B BS_KZPR01BD ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr1--chr5]],translocation CAMTA1 NA SH3PXD2B NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +5:19838759 5:19660346 CDH18--CDH18 BS_KZPR01BD ARRIBA frameshift 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr5:1.10Mb]],inversion/5'-5' CDH18 NA CDH18 NA NA NA NA NA NA +20:63931022 20:63281291 DNAJC5--ARFGAP1 BS_KZPR01BD ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr20:0.61Mb]],duplication DNAJC5 NA ARFGAP1 NA NA NA NA NA NA +20:63931022 20:63282819 DNAJC5--ARFGAP1 BS_KZPR01BD ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr20:0.61Mb]],duplication DNAJC5 NA ARFGAP1 NA NA NA NA NA NA +22:29288786 6:143942663 EWSR1--PLAGL1 BS_KZPR01BD ARRIBA in-frame 7 0 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +22:29287134 6:143942663 EWSR1--PLAGL1 BS_KZPR01BD ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +22:29291006 6:143943027 EWSR1--PLAGL1 BS_KZPR01BD ARRIBA other 3 0 low [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +3:49786354 3:50519888 IP6K1--CACNA2D2 BS_KZPR01BD ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr3:0.58Mb]],duplication IP6K1 NA CACNA2D2 NA NA NA NA NA NA +3:49786354 3:50519888 IP6K1--CACNA2D2(15644)/C3orf18(38137) BS_KZPR01BD ARRIBA other 13 0 high [],duplication IP6K1 NA CACNA2D2 C3orf18 NA NA NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_KZPR01BD ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_KZPR01BD ARRIBA other 3 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_KZPR01BD ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_KZPR01BD ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +12:106750793 12:106686884 RFX4--RFX4 BS_KZPR01BD ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +14:49862578 11:2133146 RN7SL2--IGF2 BS_KZPR01BD STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr11]] RN7SL2 NA IGF2 NA NA Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KZPR01BD ARRIBA other 45 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:27109527 5:139680364 SLC9A1--CXXC5 BS_KZPR01BD ARRIBA frameshift 7 2 high [INTERCHROMOSOMAL[chr1--chr5]],translocation SLC9A1 NA CXXC5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +1:27113826 5:139680364 SLC9A1--CXXC5 BS_KZPR01BD ARRIBA frameshift 3 1 medium [INTERCHROMOSOMAL[chr1--chr5]],translocation SLC9A1 NA CXXC5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +1:27153983 5:139680364 SLC9A1--CXXC5 BS_KZPR01BD ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr1--chr5]],translocation SLC9A1 NA CXXC5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +9:112817815 9:112645650 SNX30--KIAA1958 BS_KZPR01BD ARRIBA frameshift 2 0 low [YOSHIHARA_TCGA,GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr9:0.08Mb],LOCAL_REARRANGEMENT:+:[81441]],duplication SNX30 NA KIAA1958 NA NA NA NA NA TCGAFusion +8:100231288 8:100213090 SPAG1--SPAG1 BS_KZPR01BD ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing SPAG1 NA SPAG1 NA NA NA NA NA NA +22:28296198 10:34850439 TTC28--PARD3-AS1(34053)/SS18L2P1(24771) BS_KZPR01BD ARRIBA frameshift 14 0 high [],translocation TTC28 NA PARD3-AS1 SS18L2P1 NA NA NA NA NA +17:586270 22:39029363 VPS53--AL022318.4 BS_KZPR01BD ARRIBA in-frame 12 0 high [INTERCHROMOSOMAL[chr17--chr22]],translocation VPS53 NA AL022318.4 NA TumorSuppressorGene NA NA NA NA +17:586270 22:39029363 VPS53--AL022318.4 BS_KZPR01BD STARFUSION in-frame 14 0 NA [INTERCHROMOSOMAL[chr17--chr22]] VPS53 NA AL022318.4 NA TumorSuppressorGene NA NA NA NA +17:586270 22:39029363 VPS53--APOBEC3D BS_KZPR01BD ARRIBA in-frame 12 0 high [INTERCHROMOSOMAL[chr17--chr22]],translocation VPS53 NA APOBEC3D NA TumorSuppressorGene NA NA NA NA +17:586270 22:39029363 VPS53--APOBEC3D BS_KZPR01BD STARFUSION in-frame 14 0 NA [INTERCHROMOSOMAL[chr17--chr22]] VPS53 NA APOBEC3D NA TumorSuppressorGene NA NA NA NA +X:12065575 X:12498680 Y_RNA(10649)/FRMPD4(72891)--FRMPD4 BS_KZPR01BD ARRIBA other 9 0 medium [],deletion Y_RNA FRMPD4 FRMPD4 NA NA NA NA NA NA +19:2901048 19:2247594 ZNF57--SF3A2 BS_KZPR01BD ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr19:0.65Mb]],duplication ZNF57 NA SF3A2 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_M026T44Q ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_M026T44Q ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +6:64590223 6:64593309 EYS--EYS BS_M026T44Q ARRIBA frameshift 21 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +5:177334284 X:44670220 LMAN2--RPL19P20(20501)/RPSAP61(70867) BS_M026T44Q ARRIBA frameshift 5 0 high [],translocation LMAN2 NA RPL19P20 RPSAP61 NA NA NA NA NA +17:39729559 3:197021246 MIEN1--MELTF BS_M026T44Q ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr17--chr3]],translocation MIEN1 NA MELTF NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_M026T44Q ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_M026T44Q ARRIBA other 5 1 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +17:1050050 17:4124051 ABR--ZZEF1 BS_M0QYNVK8 ARRIBA in-frame 32 2 high [INTRACHROMOSOMAL[chr17:2.78Mb]],duplication ABR NA ZZEF1 NA Oncogene NA NA NA NA +17:5730652 17:15987368 AC006236.1--ZSWIM7 BS_M0QYNVK8 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr17:10.25Mb]],duplication/3'-3' AC006236.1 NA ZSWIM7 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_M0QYNVK8 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_M0QYNVK8 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:5192163 17:12894940 AC087500.1--ARHGAP44 BS_M0QYNVK8 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr17:7.54Mb]],deletion AC087500.1 NA ARHGAP44 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_M0QYNVK8 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_M0QYNVK8 ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +X:77574250 X:84973237 ATRX--Z83820.1 BS_M0QYNVK8 ARRIBA frameshift 8 1 high [INTRACHROMOSOMAL[chrX:7.19Mb]],inversion ATRX NA Z83820.1 NA CosmicCensus, Oncogene NA NA NA NA +1:64658873 18:57580199 CACHD1--FECH BS_M0QYNVK8 ARRIBA in-frame 5 0 high [INTERCHROMOSOMAL[chr1--chr18]],translocation CACHD1 NA FECH NA NA NA NA NA NA +3:84959668 3:85383346 CADM2--CADM2 BS_M0QYNVK8 ARRIBA frameshift 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr3:1.12Mb]],inversion/3'-3' CADM2 NA CADM2 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +17:1436790 17:3763960 CRK--ITGAE BS_M0QYNVK8 ARRIBA frameshift 12 0 high [INTRACHROMOSOMAL[chr17:2.25Mb]],duplication CRK NA ITGAE NA Oncogene NA NA NA NA +17:1436620 17:3763960 CRK--ITGAE BS_M0QYNVK8 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr17:2.25Mb]],duplication CRK NA ITGAE NA Oncogene NA NA NA NA +17:1436790 17:3761520 CRK--ITGAE BS_M0QYNVK8 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr17:2.25Mb]],duplication CRK NA ITGAE NA Oncogene NA NA NA NA +17:1455877 17:3761520 CRK--ITGAE BS_M0QYNVK8 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:2.25Mb]],duplication CRK NA ITGAE NA Oncogene NA NA NA NA +17:1436790 17:3761982 CRK--ITGAE BS_M0QYNVK8 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr17:2.25Mb]],duplication CRK NA ITGAE NA Oncogene NA NA NA NA +11:9178132 3:197194589 DENND5A--DLG1 BS_M0QYNVK8 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr11--chr3]],translocation DENND5A NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA +X:154535562 X:135065747 G6PD--SMIM10L2B-AS1 BS_M0QYNVK8 ARRIBA other 5 2 medium [INTRACHROMOSOMAL[chrX:19.41Mb]],inversion G6PD NA SMIM10L2B-AS1 NA NA NA NA NA NA +17:752133 17:13362362 GEMIN4--LINC02093(55602)/HS3ST3A1(133327) BS_M0QYNVK8 ARRIBA frameshift 6 0 medium [],inversion GEMIN4 NA LINC02093 HS3ST3A1 NA NA NA NA NA +17:752133 17:13403429 GEMIN4--LINC02093(96669)/HS3ST3A1(92260) BS_M0QYNVK8 ARRIBA frameshift 2 0 medium [],inversion GEMIN4 NA LINC02093 HS3ST3A1 NA NA NA NA NA +X:13938507 10:32305931 GPM6B--EPC1 BS_M0QYNVK8 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chrX--chr10]],translocation GPM6B NA EPC1 NA NA NA NA NA NA +X:105267541 X:124963817 IL1RAPL2--TENM1 BS_M0QYNVK8 ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chrX:18.61Mb]],inversion IL1RAPL2 NA TENM1 NA NA NA NA NA NA +2:206007284 2:206095791 INO80D--AC007383.2(9227)/NDUFS1(19026) BS_M0QYNVK8 ARRIBA frameshift 3 0 high [],duplication INO80D NA AC007383.2 NDUFS1 NA NA NA NA NA +4:54658081 4:129780010 KIT--LINC02465 BS_M0QYNVK8 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr4:75.03Mb]],deletion KIT NA LINC02465 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +18:50932360 18:47716738 ME2--AC026898.1(12993)/SMAD2(92219) BS_M0QYNVK8 ARRIBA frameshift 2 0 medium [],duplication ME2 NA AC026898.1 SMAD2 NA NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA +2:133129978 2:136313820 NCKAP5--AC112255.1(80575)/UBBP1(15621) BS_M0QYNVK8 ARRIBA frameshift 4 0 high [],inversion NCKAP5 NA AC112255.1 UBBP1 NA NA NA NA NA +2:133517458 2:136489596 NCKAP5--RN7SKP141(98927)/SMC4P1(55116) BS_M0QYNVK8 ARRIBA frameshift 6 0 medium [],inversion NCKAP5 NA RN7SKP141 SMC4P1 NA NA NA NA NA +17:16215814 17:5730681 NCOR1--AC006236.1 BS_M0QYNVK8 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr17:10.30Mb]],inversion NCOR1 NA AC006236.1 NA CosmicCensus, Oncogene NA NA NA NA +17:16072145 17:1365058 NCOR1--YWHAE BS_M0QYNVK8 ARRIBA in-frame 10 0 medium [INTRACHROMOSOMAL[chr17:14.63Mb]],deletion NCOR1 NA YWHAE NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +17:16073429 17:1365058 NCOR1--YWHAE BS_M0QYNVK8 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr17:14.63Mb]],deletion NCOR1 NA YWHAE NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +17:16075534 17:1365058 NCOR1--YWHAE BS_M0QYNVK8 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr17:14.63Mb]],deletion NCOR1 NA YWHAE NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +17:5553386 17:3669098 NLRP1--EMC6 BS_M0QYNVK8 ARRIBA in-frame 21 2 high [INTRACHROMOSOMAL[chr17:1.83Mb]],inversion NLRP1 NA EMC6 NA NA NA NA NA NA +17:5553386 17:3669098 NLRP1--EMC6 BS_M0QYNVK8 STARFUSION other 21 2 NA [INTRACHROMOSOMAL[chr17:1.83Mb]] NLRP1 NA EMC6 NA NA NA NA NA NA +17:5553386 17:3678647 NLRP1--P2RX5 BS_M0QYNVK8 ARRIBA frameshift 8 3 high [INTRACHROMOSOMAL[chr17:1.80Mb]],inversion/5'-5' NLRP1 NA P2RX5 NA NA NA NA NA NA +17:5553386 17:3678647 NLRP1--P2RX5-TAX1BP3 BS_M0QYNVK8 ARRIBA frameshift 8 3 high [INTRACHROMOSOMAL[chr17:1.80Mb]],inversion/5'-5' NLRP1 NA P2RX5-TAX1BP3 NA NA NA NA NA NA +17:5543707 17:3662962 NLRP1--TAX1BP3 BS_M0QYNVK8 ARRIBA other 18 0 medium [INTRACHROMOSOMAL[chr17:1.83Mb]],inversion/5'-5' NLRP1 NA TAX1BP3 NA NA NA NA NA NA +7:129710571 7:100633556 NRF1--TFR2 BS_M0QYNVK8 ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chr7:28.97Mb]],inversion NRF1 NA TFR2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA +2:136489683 2:133559117 RN7SKP141(99014)/SMC4P1(55029)--NCKAP5 BS_M0QYNVK8 ARRIBA other 17 0 high [],inversion RN7SKP141 SMC4P1 NCKAP5 NA NA NA NA NA NA +17:1844686 17:4607361 RPA1--SMTNL2 BS_M0QYNVK8 ARRIBA in-frame 13 1 high [INTRACHROMOSOMAL[chr17:2.68Mb]],deletion RPA1 NA SMTNL2 NA TumorSuppressorGene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_M0QYNVK8 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +X:19746318 8:99832369 SH3KBP1--VPS13B BS_M0QYNVK8 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chrX--chr8]],translocation SH3KBP1 NA VPS13B NA NA NA NA NA NA +X:9944913 3:23968 SHROOM2--LINC01986 BS_M0QYNVK8 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chrX--chr3]],translocation SHROOM2 NA LINC01986 NA NA NA NA NA NA +X:153694889 10:56860582 SLC6A8--SNORD2(264551)/MIR3924(443897) BS_M0QYNVK8 ARRIBA frameshift 8 0 medium [],translocation SLC6A8 NA SNORD2 MIR3924 NA NA NA NA NA +18:47930361 18:50809404 SMAD2--MRO BS_M0QYNVK8 ARRIBA other 50 1 high [INTRACHROMOSOMAL[chr18:2.86Mb]],duplication SMAD2 NA MRO NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +18:47930800 18:50809404 SMAD2--MRO BS_M0QYNVK8 ARRIBA other 22 0 high [INTRACHROMOSOMAL[chr18:2.86Mb]],duplication SMAD2 NA MRO NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +18:47930361 18:50806850 SMAD2--MRO BS_M0QYNVK8 ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr18:2.86Mb]],duplication SMAD2 NA MRO NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +18:47930361 18:50809404 SMAD2--MRO BS_M0QYNVK8 STARFUSION other 51 1 NA [INTRACHROMOSOMAL[chr18:2.86Mb]] SMAD2 NA MRO NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +18:47930800 18:50809404 SMAD2--MRO BS_M0QYNVK8 STARFUSION other 22 1 NA [INTRACHROMOSOMAL[chr18:2.86Mb]] SMAD2 NA MRO NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +17:4608379 17:13557702 SMTNL2--HS3ST3A1 BS_M0QYNVK8 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr17:8.89Mb]],deletion/5'-5' SMTNL2 NA HS3ST3A1 NA NA NA NA NA NA +9:15433636 11:34505753 SNAPC3--ELF5 BS_M0QYNVK8 ARRIBA frameshift 13 0 high [INTERCHROMOSOMAL[chr9--chr11]],translocation SNAPC3 NA ELF5 NA Oncogene TranscriptionFactor NA NA NA +X:9501849 X:9760826 TBL1X--GPR143 BS_M0QYNVK8 ARRIBA other 2 1 high [ChimerSeq,INTRACHROMOSOMAL[chrX:0.01Mb],LOCAL_INVERSION:+:-:[5603]],inversion TBL1X NA GPR143 NA NA NA NA NA TCGAFusion +2:217978765 2:209820417 TNS1--UNC80 BS_M0QYNVK8 ARRIBA frameshift 13 1 high [INTRACHROMOSOMAL[chr2:7.80Mb]],deletion/5'-5' TNS1 NA UNC80 NA NA NA NA NA NA +X:101041317 X:130656695 TRMT2B--ENOX2 BS_M0QYNVK8 ARRIBA in-frame 7 1 high [INTRACHROMOSOMAL[chrX:29.57Mb]],duplication TRMT2B NA ENOX2 NA NA NA NA NA NA +X:101051644 X:130656695 TRMT2B--ENOX2 BS_M0QYNVK8 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chrX:29.57Mb]],duplication TRMT2B NA ENOX2 NA NA NA NA NA NA +X:101051251 X:130656695 TRMT2B--ENOX2 BS_M0QYNVK8 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chrX:29.57Mb]],duplication TRMT2B NA ENOX2 NA NA NA NA NA NA +X:10067490 X:7912093 WWC3--PNPLA4 BS_M0QYNVK8 ARRIBA frameshift 13 3 high [INTRACHROMOSOMAL[chrX:2.09Mb]],inversion WWC3 NA PNPLA4 NA NA NA NA NA NA +17:1400047 17:5584500 YWHAE--NLRP1 BS_M0QYNVK8 ARRIBA frameshift 55 4 high [INTRACHROMOSOMAL[chr17:4.10Mb]],duplication YWHAE NA NLRP1 NA CosmicCensus, Oncogene NA NA NA NA +17:1400047 17:5584500 YWHAE--NLRP1 BS_M0QYNVK8 STARFUSION other 56 5 NA [INTRACHROMOSOMAL[chr17:4.10Mb]] YWHAE NA NLRP1 NA CosmicCensus, Oncogene NA NA NA NA +X:75450802 X:104658895 ZDHHC15--IL1RAPL2 BS_M0QYNVK8 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chrX:29.04Mb]],inversion ZDHHC15 NA IL1RAPL2 NA NA NA NA NA NA +14:77139349 14:20584498 ZDHHC22--AL163195.3 BS_M0QYNVK8 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr14:56.52Mb]],deletion ZDHHC22 NA AL163195.3 NA NA NA NA NA NA +14:77139349 14:20584498 ZDHHC22--RNASE11 BS_M0QYNVK8 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr14:56.52Mb]],deletion ZDHHC22 NA RNASE11 NA NA NA NA NA NA +17:4142542 17:5172805 ZZEF1--USP6 BS_M0QYNVK8 ARRIBA in-frame 7 0 high [INTRACHROMOSOMAL[chr17:0.97Mb]],inversion ZZEF1 NA USP6 NA NA CosmicCensus, Oncogene NA NA NA +6:52995906 14:49862837 7SK--RN7SL2 BS_M15PW2N0 STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995911 14:49862726 7SK--RN7SL2 BS_M15PW2N0 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995913 14:49862745 7SK--RN7SL2 BS_M15PW2N0 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995922 14:49862666 7SK--RN7SL2 BS_M15PW2N0 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_M15PW2N0 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_M15PW2N0 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +6:114540730 6:114371592 AL138830.1(4855)/RNU6-475P(326143)--HDAC2-AS2 BS_M15PW2N0 ARRIBA other 6 0 high [],duplication AL138830.1 RNU6-475P HDAC2-AS2 NA NA NA NA NA NA +14:49586757 6:52995788 AL139099.5--7SK BS_M15PW2N0 STARFUSION other 4 12 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_M15PW2N0 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_M15PW2N0 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +16:76467523 16:76448012 CNTNAP4--CNTNAP4 BS_M15PW2N0 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.28Mb]],duplication/non-canonical_splicing CNTNAP4 NA CNTNAP4 NA NA NA NA NA NA +21:8400391 8:80873859 FP236383.1--ZNF704 BS_M15PW2N0 ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr21--chr8]],translocation FP236383.1 NA ZNF704 NA NA TranscriptionFactor NA NA NA +6:114469299 6:114371592 HDAC2-AS2--HDAC2-AS2 BS_M15PW2N0 ARRIBA other 32 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA +8:2492872 8:2494091 MYOM2(327320)/AC245519.1(1004)--AC245519.1 BS_M15PW2N0 ARRIBA other 26 3 high [],duplication MYOM2 AC245519.1 AC245519.1 NA NA NA NA NA NA +X:103517374 X:103530897 RAB40A--RAB40A(11408)/TCEAL4(45334) BS_M15PW2N0 ARRIBA other 2 1 medium [],duplication RAB40A NA RAB40A TCEAL4 NA NA NA NA NA +14:49586758 6:52995785 RN7SL1--7SK BS_M15PW2N0 STARFUSION other 5 12 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_M15PW2N0 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:21292164 12:21306988 SLCO1A2--SLCO1A2 BS_M15PW2N0 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA +18:51110874 18:51560593 SMAD4(25829)/AC090330.1(47408)--LINC01630 BS_M15PW2N0 ARRIBA other 4 0 high [],deletion SMAD4 AC090330.1 LINC01630 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +8:93831572 8:93755020 TMEM67(12338)/AC084346.1(2882)--TMEM67 BS_M15PW2N0 ARRIBA other 2 0 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_M1PVEHCM ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_M1PVEHCM ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_M1PVEHCM ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_M1PVEHCM ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_M1PVEHCM ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_M1PVEHCM ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_M1PVEHCM ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_M1PVEHCM ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_M1PVEHCM ARRIBA frameshift 33 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_M1PVEHCM ARRIBA in-frame 45 4 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +5:151556058 5:151458788 FAT2--SLC36A1 BS_M1PVEHCM ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_INVERSION:-:+:[11712]],duplication/3'-3' FAT2 NA SLC36A1 NA Oncogene NA NA NA NA +1:74492266 1:74439490 FPGT-TNNI3K--FPGT-TNNI3K BS_M1PVEHCM ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_M1PVEHCM ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_M1PVEHCM ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_M1PVEHCM ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_M1PVEHCM ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_M1PVEHCM ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_M1PVEHCM ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_M1PVEHCM ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:211019256 KCNH1--AL590132.1 BS_M1PVEHCM ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_M1PVEHCM ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_M1PVEHCM ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_M1PVEHCM ARRIBA in-frame 13 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_M1PVEHCM ARRIBA other 3 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_M1PVEHCM ARRIBA other 7 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_M1PVEHCM ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_M1PVEHCM ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_M1PVEHCM ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_M1PVEHCM ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:131260259 10:131309299 TCERG1L--TCERG1L BS_M1PVEHCM ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA +1:74492266 1:74439490 TNNI3K--TNNI3K BS_M1PVEHCM ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.31Mb]],duplication/non-canonical_splicing TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_M1T1K5WV ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_M1T1K5WV ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:199070153 2:198579708 AC020718.1--AC019330.1 BS_M1T1K5WV ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +2:199071420 2:198579708 AC020718.1--AC019330.1 BS_M1T1K5WV ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +12:41909729 12:41945148 AC090630.1--AC090630.1(12556)/AC023513.1(124787) BS_M1T1K5WV ARRIBA other 9 3 medium [],duplication AC090630.1 NA AC090630.1 AC023513.1 NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_M1T1K5WV ARRIBA other 6 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_M1T1K5WV ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_M1T1K5WV ARRIBA other 13 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_M1T1K5WV ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--AL590132.1 BS_M1T1K5WV ARRIBA frameshift 18 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.28Mb]],duplication/non-canonical_splicing AL590132.1 NA AL590132.1 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_M1T1K5WV ARRIBA frameshift 18 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_M1T1K5WV ARRIBA in-frame 14 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_M1T1K5WV ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_M1T1K5WV ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211107377 AL590132.1--KCNH1 BS_M1T1K5WV ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_M1T1K5WV ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_M1T1K5WV ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_M1T1K5WV ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_M1T1K5WV ARRIBA other 12 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_M1T1K5WV ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_M1T1K5WV ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +5:22212498 5:70617450 CDH12--AC146944.1(62184)/AC139272.1(133734) BS_M1T1K5WV ARRIBA other 2 0 medium [],duplication CDH12 NA AC146944.1 AC139272.1 NA NA NA NA NA +11:31241450 11:31305777 DCDC1--DCDC1 BS_M1T1K5WV ARRIBA in-frame 23 3 low [SELFIE,INTRACHROMOSOMAL[chr11:0.54Mb]],duplication/non-canonical_splicing DCDC1 NA DCDC1 NA NA NA NA NA NA +12:92891629 12:92976410 EEA1--RNU6-1329P(23665)/LINC02413(22808) BS_M1T1K5WV ARRIBA frameshift 3 0 medium [],duplication EEA1 NA RNU6-1329P LINC02413 TranscriptionFactor NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_M1T1K5WV ARRIBA frameshift 18 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_M1T1K5WV ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:211019256 KCNH1--AL590132.1 BS_M1T1K5WV ARRIBA in-frame 1 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:210920069 KCNH1--AL590132.1 BS_M1T1K5WV ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_M1T1K5WV ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_M1T1K5WV ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_M1T1K5WV ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_M1T1K5WV ARRIBA in-frame 14 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_M1T1K5WV ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_M1T1K5WV ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211107377 KCNH1--AL590132.1 BS_M1T1K5WV ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_M1T1K5WV ARRIBA frameshift 18 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +3:195729739 3:195628399 LINC00969--MUC20P1(8166)/AC233280.19(6789) BS_M1T1K5WV ARRIBA other 3 0 medium [],duplication LINC00969 NA MUC20P1 AC233280.19 NA NA NA NA NA +6:132134483 6:132098931 LINC01013--AL021408.1 BS_M1T1K5WV ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA +2:186039500 2:186086370 LINC01473--LINC01473(3137)/AC104058.1(76579) BS_M1T1K5WV ARRIBA other 4 0 medium [],duplication LINC01473 NA LINC01473 AC104058.1 NA NA NA NA NA +14:60008214 14:59981848 LRRC9--LRRC9 BS_M1T1K5WV ARRIBA in-frame 15 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +3:195729739 3:195628399 MUC20--MUC20P1(8166)/AC233280.19(6789) BS_M1T1K5WV ARRIBA frameshift 3 0 medium [],duplication MUC20 NA MUC20P1 AC233280.19 NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_M1T1K5WV ARRIBA frameshift 19 3 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_M1T1K5WV ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_M1T1K5WV ARRIBA other 13 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +14:31884812 14:31846471 NUBPL(23588)/AL355112.1(40989)--NUBPL BS_M1T1K5WV ARRIBA other 3 0 medium [],duplication NUBPL AL355112.1 NUBPL NA NA NA NA NA NA +8:6001437 8:6059817 RN7SKP159(90201)/AC079054.1(34996)--AC009435.1 BS_M1T1K5WV ARRIBA other 8 4 low [],duplication RN7SKP159 AC079054.1 AC009435.1 NA NA NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_M1T1K5WV ARRIBA other 22 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +10:88631230 10:88587267 RPL7P34(12296)/LIPF(33211)--LIPJ BS_M1T1K5WV ARRIBA other 1 5 high [],duplication RPL7P34 LIPF LIPJ NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_M1T1K5WV ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:102906536 4:102949427 SLC9B1--SLC9B1 BS_M1T1K5WV ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing SLC9B1 NA SLC9B1 NA NA NA NA NA NA +4:16355785 4:16287711 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_M1T1K5WV ARRIBA other 3 2 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +14:37701526 14:37680151 TTC6--TTC6 BS_M1T1K5WV ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_M1T1K5WV ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +5:166125663 5:167284764 RPL7P20(96352)/AC114321.1(2835)--TENM2 BS_M4923M40 ARRIBA other 1 2 medium [],deletion RPL7P20 AC114321.1 TENM2 NA NA NA NA NA NA +22:26590053 22:22321695 TPST2--IGLV5-52(2469)/IGLV1-51(777) BS_M4923M40 ARRIBA other 3 0 medium [],deletion TPST2 NA IGLV5-52 IGLV1-51 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_M4NVX721 ARRIBA other 37 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_M4NVX721 ARRIBA other 37 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:130912110 7:131025167 AC016831.1--LINC-PINT BS_M4NVX721 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.03Mb],LOCAL_REARRANGEMENT:-:[28450]],duplication AC016831.1 NA LINC-PINT NA NA TumorSuppressorGene NA NA NA +12:27185424 12:27046158 AC092747.1(24031)/STK38L(58544)--MED21 BS_M4NVX721 ARRIBA other 2 1 medium [],duplication AC092747.1 STK38L MED21 NA NA NA Oncogene, Kinase NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_M4NVX721 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +6:114540730 6:114371592 AL138830.1(4855)/RNU6-475P(326143)--HDAC2-AS2 BS_M4NVX721 ARRIBA other 2 1 high [],duplication AL138830.1 RNU6-475P HDAC2-AS2 NA NA NA NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_M4NVX721 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_M4NVX721 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_M4NVX721 ARRIBA frameshift 12 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_M4NVX721 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_M4NVX721 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_M4NVX721 ARRIBA other 4 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_M4NVX721 ARRIBA frameshift 4 0 medium [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +9:15729798 9:15695235 CCDC171--CCDC171 BS_M4NVX721 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.51Mb]],duplication/non-canonical_splicing CCDC171 NA CCDC171 NA NA NA NA NA NA +9:22127402 9:22046751 CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_M4NVX721 ARRIBA other 4 0 medium [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_M4NVX721 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_M4NVX721 ARRIBA in-frame 20 5 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_M4NVX721 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +21:40692810 21:40708771 DSCAM--DSCAM BS_M4NVX721 ARRIBA in-frame 6 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA +14:89870643 14:89932627 EFCAB11--EFCAB11 BS_M4NVX721 ARRIBA frameshift 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA +4:65331973 4:65377063 EPHA5--EPHA5 BS_M4NVX721 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.35Mb]],duplication/non-canonical_splicing EPHA5 NA EPHA5 NA Kinase, Kinase Kinase, Kinase NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_M4NVX721 ARRIBA in-frame 39 10 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_M4NVX721 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34091883 6:34133859 GRM4--GRM4 BS_M4NVX721 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_M4NVX721 ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_M4NVX721 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_M4NVX721 ARRIBA frameshift 12 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_M4NVX721 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_M4NVX721 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_M4NVX721 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_M4NVX721 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:210920069 KCNH1--AL590132.1 BS_M4NVX721 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_M4NVX721 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_M4NVX721 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_M4NVX721 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_M4NVX721 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_M4NVX721 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +14:59475869 14:59565275 L3HYPDH--CCDC175 BS_M4NVX721 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +3:45458886 3:45417482 LARS2--LARS2 BS_M4NVX721 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.16Mb]],duplication/non-canonical_splicing LARS2 NA LARS2 NA NA NA NA NA NA +2:7968145 2:8312849 LINC00298--LINC00299 BS_M4NVX721 ARRIBA other 1 2 high [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00298 NA LINC00299 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_M4NVX721 ARRIBA other 7 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +14:46920012 14:47035304 MDGA2--MDGA2 BS_M4NVX721 ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +8:74612940 8:74500513 MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_M4NVX721 ARRIBA other 3 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA +15:56429086 15:56466288 MNS1--MNS1(1151)/AC090518.1(76664) BS_M4NVX721 ARRIBA frameshift 3 0 high [],duplication MNS1 NA MNS1 AC090518.1 NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_M4NVX721 ARRIBA other 8 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +8:17331150 8:17373240 MTMR7--MTMR7 BS_M4NVX721 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_M4NVX721 ARRIBA other 3 1 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_M4NVX721 ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_M4NVX721 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +18:34093465 18:34112697 NOL4--NOL4 BS_M4NVX721 ARRIBA frameshift 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr18:0.37Mb]],duplication NOL4 NA NOL4 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_M4NVX721 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +1:13782831 1:13769039 PRDM2--PRDM2 BS_M4NVX721 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +12:15504069 12:15483974 PTPRO--PTPRO BS_M4NVX721 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRO NA PTPRO NA NA NA NA NA NA +3:77602491 3:77564954 ROBO2--ROBO2 BS_M4NVX721 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_M4NVX721 ARRIBA other 37 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:130288227 6:130313093 SAMD3--SAMD3 BS_M4NVX721 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_M4NVX721 ARRIBA in-frame 6 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_M4NVX721 ARRIBA other 4 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +1:235401587 1:235335242 TBCE--GGPS1 BS_M4NVX721 ARRIBA frameshift 3 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.02Mb],LOCAL_REARRANGEMENT:+:[22828]],duplication TBCE NA GGPS1 NA NA NA NA NA TCGAFusion +1:235380149 1:235335242 TBCE--GGPS1 BS_M4NVX721 ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.02Mb],LOCAL_REARRANGEMENT:+:[22828]],duplication TBCE NA GGPS1 NA NA NA NA NA TCGAFusion +1:235380149 1:235341708 TBCE--GGPS1 BS_M4NVX721 ARRIBA in-frame 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.02Mb],LOCAL_REARRANGEMENT:+:[22828]],duplication TBCE NA GGPS1 NA NA NA NA NA TCGAFusion +10:131260259 10:131309299 TCERG1L--TCERG1L BS_M4NVX721 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA +1:246564346 1:246568130 TFB2M--CNST BS_M4NVX721 ARRIBA frameshift 12 1 high [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_INVERSION:-:+:[120]],duplication/5'-5' TFB2M NA CNST NA NA NA NA NA NA +3:167554683 3:167658326 WDR49--WDR49(4343)/PDCD10(24972) BS_M4NVX721 ARRIBA frameshift 2 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +3:21510861 3:21665028 ZNF385D--ZNF385D BS_M4NVX721 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ZNF385D NA ZNF385D NA TranscriptionFactor TranscriptionFactor NA NA NA +5:99743695 9:33700132 AC008837.2(148398)/AC092284.1(204600)--AL356489.2 BS_M4TTKPNR ARRIBA other 4 0 medium [],translocation AC008837.2 AC092284.1 AL356489.2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_M4TTKPNR ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_M4TTKPNR ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_M4TTKPNR ARRIBA other 8 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +5:37122430 5:37239869 C5orf42--C5orf42 BS_M4TTKPNR ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.14Mb]],duplication/non-canonical_splicing C5orf42 NA C5orf42 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_M4TTKPNR ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:138861139 7:140781693 KIAA1549--BRAF BS_M4TTKPNR ARRIBA in-frame 11 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_M4TTKPNR ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:1316375 2:1247327 SNTG2--SNTG2 BS_M4TTKPNR ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.42Mb]],duplication/non-canonical_splicing SNTG2 NA SNTG2 NA NA NA NA NA NA +12:122288489 6:117320030 CLIP1--ROS1 BS_M7HCF7DW ARRIBA in-frame 17 1 high [ChimerKB,Cosmic,INTERCHROMOSOMAL[chr12--chr6]],translocation CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA +12:122288489 6:117320030 CLIP1--ROS1 BS_M7HCF7DW STARFUSION in-frame 17 1 NA [ChimerKB,Cosmic,INTERCHROMOSOMAL[chr12--chr6]] CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA +6:114469299 6:114371592 HDAC2-AS2--HDAC2-AS2 BS_M7HCF7DW ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_M7HCF7DW ARRIBA other 3 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_M7QJ8VF0 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_M7QJ8VF0 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:137917431 9:137913180 CACNA1B--CACNA1B BS_M7QJ8VF0 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.25Mb]],duplication/non-canonical_splicing CACNA1B NA CACNA1B NA NA NA NA NA NA +7:154053063 7:152801621 DPP6--ACTR3B BS_M7QJ8VF0 ARRIBA in-frame 3 0 medium [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr7:1.03Mb]],duplication DPP6 NA ACTR3B NA NA NA NA NA NA +7:154053063 7:152783187 DPP6--ACTR3B BS_M7QJ8VF0 ARRIBA frameshift 1 0 low [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr7:1.03Mb]],duplication DPP6 NA ACTR3B NA NA NA NA NA NA +13:91448922 13:91397069 GPC5--MIR17HG(42490)/GPC5(1538) BS_M7QJ8VF0 ARRIBA frameshift 5 0 low [],duplication GPC5 NA MIR17HG GPC5 TumorSuppressorGene, CosmicCensus, Oncogene NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA +6:34091883 6:34133859 GRM4--GRM4 BS_M7QJ8VF0 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_M7QJ8VF0 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +19:1174172 12:132150981 SBNO2--NOC4L BS_M7QJ8VF0 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr19--chr12]],translocation SBNO2 NA NOC4L NA NA NA NA NA NA +8:30756887 6:80725936 UBXN8--AL590824.1(168747)/FAM46A(765503) BS_M7QJ8VF0 ARRIBA frameshift 2 0 high [],translocation UBXN8 NA AL590824.1 FAM46A NA NA NA NA NA +22:34884141 22:35002862 Z82196.2(159222)/ISX-AS1(113578)--ISX-AS1 BS_M7QJ8VF0 ARRIBA other 5 2 medium [],duplication Z82196.2 ISX-AS1 ISX-AS1 NA NA NA NA NA NA +2:66134839 2:66072504 AC007389.1(50200)/AC118345.1(100538)--AC007389.1 BS_M84H3KXA ARRIBA other 2 0 low [],duplication AC007389.1 AC118345.1 AC007389.1 NA NA NA NA NA NA +2:65601157 5:79130933 AC007389.3--BHMT BS_M84H3KXA ARRIBA other 23 0 medium [FA_CancerSupp,INTERCHROMOSOMAL[chr2--chr5]],translocation AC007389.3 NA BHMT NA NA NA NA NA NA +2:65601157 5:79130933 AC007389.3--BHMT BS_M84H3KXA STARFUSION other 23 0 NA [FA_CancerSupp,INTERCHROMOSOMAL[chr2--chr5]] AC007389.3 NA BHMT NA NA NA NA NA NA +3:34203308 3:34669211 AC123023.1--LINC01811(106334)/FECHP1(203430) BS_M84H3KXA ARRIBA other 3 0 medium [],deletion AC123023.1 NA LINC01811 FECHP1 NA NA NA NA NA +5:77043643 5:79130935 AGGF1--BHMT BS_M84H3KXA ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr5:2.05Mb]],inversion/3'-3' AGGF1 NA BHMT NA NA NA NA NA NA +5:82543454 5:83104910 ATP6AP1L(156477)/AC026782.1(2408)--XRCC4 BS_M84H3KXA ARRIBA other 1 1 medium [],deletion ATP6AP1L AC026782.1 XRCC4 NA NA NA NA NA NA +X:141520519 X:140733470 SPANXA2-OT1--AL844175.1 BS_M84H3KXA ARRIBA other 1 0 low [INTRACHROMOSOMAL[chrX:0.82Mb]],inversion SPANXA2-OT1 NA AL844175.1 NA NA NA NA NA NA +X:141520519 X:140681303 SPANXA2-OT1--AL844175.1 BS_M84H3KXA ARRIBA other 1 0 low [INTRACHROMOSOMAL[chrX:0.82Mb]],inversion SPANXA2-OT1 NA AL844175.1 NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_M84H3KXA ARRIBA other 4 1 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_M85CXHDV ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_M85CXHDV ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_M85CXHDV ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_M85CXHDV ARRIBA other 4 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +19:33373895 19:33044364 CEBPG--RHPN2 BS_M85CXHDV ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr19:0.31Mb]],inversion CEBPG NA RHPN2 NA TranscriptionFactor NA NA NA NA +12:50112301 12:113920542 COX14--RBM19 BS_M85CXHDV ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:63.70Mb]],deletion/5'-5' COX14 NA RBM19 NA NA NA NA NA NA +3:89210520 11:76795609 EPHA3--TSKU BS_M85CXHDV ARRIBA in-frame 7 1 high [INTERCHROMOSOMAL[chr3--chr11]],translocation EPHA3 NA TSKU NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA +5:78632264 5:77311994 LHFPL2--PDE8B BS_M85CXHDV ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr5:1.06Mb]],inversion LHFPL2 NA PDE8B NA NA NA NA NA NA +5:78509784 17:78063419 LHFPL2--TNRC6C BS_M85CXHDV ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr5--chr17]],translocation/5'-5' LHFPL2 NA TNRC6C NA NA NA NA NA NA +10:93374869 10:93639265 MYOF--PDE6C BS_M85CXHDV ARRIBA frameshift 4 0 low [INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/5'-5' MYOF NA PDE6C NA NA NA NA NA NA +12:42398994 16:61273384 PPHLN1--RPS27AP16(217420)/CDH8(373858) BS_M85CXHDV ARRIBA frameshift 2 0 medium [],translocation PPHLN1 NA RPS27AP16 CDH8 NA NA NA NA NA +1:202349142 17:4780789 PPP1R12B--TM4SF5 BS_M85CXHDV ARRIBA in-frame 7 0 high [INTERCHROMOSOMAL[chr1--chr17]],translocation PPP1R12B NA TM4SF5 NA NA NA NA NA NA +3:77098340 14:84369793 ROBO2--MTCYBP27(192705)/RNU6-976P(370149) BS_M85CXHDV ARRIBA frameshift 4 0 medium [],translocation ROBO2 NA MTCYBP27 RNU6-976P CosmicCensus NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_M85CXHDV ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:118815028 2:203767828 SEC24D--KRT18P39(2235)/NPM1P33(4803) BS_M85CXHDV ARRIBA frameshift 5 0 high [],translocation SEC24D NA KRT18P39 NPM1P33 NA NA NA NA NA +7:138588275 17:50491657 TRIM24--RSAD1(5682)/AC021491.1(11755) BS_M85CXHDV ARRIBA other 8 1 medium [],translocation TRIM24 NA RSAD1 AC021491.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +5:77180486 5:78564871 ZBED3-AS1(13577)/PDE8B(29963)--LHFPL2 BS_M85CXHDV ARRIBA other 4 1 high [],inversion ZBED3-AS1 PDE8B LHFPL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_M86ECPHK ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_M86ECPHK ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +22:16669462 22:16679493 ANKRD62P1-PARP4P3--AC005301.1 BS_M86ECPHK ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[476]],duplication ANKRD62P1-PARP4P3 NA AC005301.1 NA NA NA NA NA NA +1:205211271 22:41926415 DSTYK--TNFRSF13C BS_M86ECPHK ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr1--chr22]],translocation DSTYK NA TNFRSF13C NA Kinase NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_M86ECPHK ARRIBA frameshift 72 4 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_M86ECPHK ARRIBA frameshift 4 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_M86ECPHK ARRIBA other 2 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_M86ECPHK ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +2:210098086 2:210220811 KANSL1L--ACADL BS_M86ECPHK ARRIBA in-frame 1 8 high [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]],duplication KANSL1L NA ACADL NA NA NA NA NA NA +2:210104104 2:210220802 KANSL1L--ACADL BS_M86ECPHK ARRIBA frameshift 2 4 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]],duplication KANSL1L NA ACADL NA NA NA NA NA NA +2:210153495 2:210205796 KANSL1L--ACADL BS_M86ECPHK ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]],duplication KANSL1L NA ACADL NA NA NA NA NA NA +2:210098086 2:210220802 KANSL1L--ACADL BS_M86ECPHK STARFUSION in-frame 13 9 NA [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]] KANSL1L NA ACADL NA NA NA NA NA NA +2:210153495 2:210220802 KANSL1L--ACADL BS_M86ECPHK STARFUSION in-frame 12 9 NA [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]] KANSL1L NA ACADL NA NA NA NA NA NA +11:1599051 11:71526517 KRTAP5-AS1--NADSYN1(2410)/KRTAP5-7(750) BS_M86ECPHK ARRIBA other 3 0 low [],inversion KRTAP5-AS1 NA NADSYN1 KRTAP5-7 NA NA NA NA NA +6:129410813 6:129558166 LAMA2--AL356124.1 BS_M86ECPHK ARRIBA other 2 2 medium [INTRACHROMOSOMAL[chr6:0.01Mb],LOCAL_INVERSION:+:-:[10057]],duplication/3'-3' LAMA2 NA AL356124.1 NA NA NA NA NA NA +3:27916774 3:28028603 LINC01980(25473)/LINC01967(80436)--LINC01967 BS_M86ECPHK ARRIBA other 1 3 medium [],duplication LINC01980 LINC01967 LINC01967 NA NA NA NA NA NA +5:17926959 5:17920227 LINC02223--LINC02223 BS_M86ECPHK ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.27Mb]],duplication/non-canonical_splicing LINC02223 NA LINC02223 NA NA NA NA NA NA +2:77518318 2:77522069 LRRTM4--LRRTM4 BS_M86ECPHK ARRIBA frameshift 9 4 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.85Mb]],duplication LRRTM4 NA LRRTM4 NA NA NA NA NA NA +1:219218712 1:219210532 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_M86ECPHK ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_M86ECPHK ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_M86ECPHK ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:216175252 1:216207431 USH2A--USH2A BS_M86ECPHK ARRIBA in-frame 37 5 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_M8EA6R2A STARFUSION other 19 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +18:23144845 18:23834015 CABLES1--LAMA3 BS_M8EA6R2A ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr18:0.43Mb]],inversion/3'-3' CABLES1 NA LAMA3 NA TumorSuppressorGene NA NA NA NA +9:172081 15:27326809 CBWD1--GABRG3 BS_M8EA6R2A ARRIBA frameshift 7 0 high [INTERCHROMOSOMAL[chr9--chr15]],translocation CBWD1 NA GABRG3 NA NA NA NA NA NA +1:23743578 1:24180854 ELOA--IFNLR1 BS_M8EA6R2A ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.39Mb]],inversion ELOA NA IFNLR1 NA NA NA NA NA NA +1:23743578 1:24169601 ELOA--IFNLR1 BS_M8EA6R2A ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.39Mb]],inversion ELOA NA IFNLR1 NA NA NA NA NA NA +5:56010802 12:51189748 FLJ31104(7153)/AC008892.1(48248)--POU6F1 BS_M8EA6R2A ARRIBA other 6 1 medium [],translocation FLJ31104 AC008892.1 POU6F1 NA NA TranscriptionFactor NA NA NA +12:51189751 5:56011294 POU6F1--FLJ31104(7645)/AC008892.1(47756) BS_M8EA6R2A ARRIBA other 11 0 medium [],translocation POU6F1 NA FLJ31104 AC008892.1 TranscriptionFactor NA NA NA NA +6:52995911 14:49862842 7SK--RN7SL2 BS_M8M56Z4Y STARFUSION other 9 19 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995908 14:49862665 7SK--RN7SL2 BS_M8M56Z4Y STARFUSION other 9 19 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_M8M56Z4Y ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_M8M56Z4Y ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_M8M56Z4Y ARRIBA other 6 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +1:156407081 5:141476533 C1orf61--PCDHGC3 BS_M8M56Z4Y ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr1--chr5]],translocation C1orf61 NA PCDHGC3 NA NA TumorSuppressorGene NA NA NA +7:137521866 7:137609609 DGKI--DGKI BS_M8M56Z4Y ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_M8M56Z4Y ARRIBA in-frame 5 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_M8M56Z4Y ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_M8M56Z4Y ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +12:125186866 12:103987050 TMEM132B--TDG BS_M8M56Z4Y ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_M8WP5T16 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_M8WP5T16 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +21:40692810 21:40708771 DSCAM--DSCAM BS_M8WP5T16 ARRIBA in-frame 17 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_M8WP5T16 STARFUSION other 5 9 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +12:101770406 12:101864286 GNPTAB--RNA5SP369(27359)/RNU6-1183P(7456) BS_M8WP5T16 ARRIBA frameshift 1 1 low [],duplication GNPTAB NA RNA5SP369 RNU6-1183P NA NA NA NA NA +X:150471490 X:150469745 MAMLD1--MAMLD1 BS_M8WP5T16 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_M8WP5T16 ARRIBA other 7 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_M8WP5T16 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +6:11187412 15:77999191 NEDD9--TBC1D2B BS_M9C4RY4P ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr6--chr15]],translocation NEDD9 NA TBC1D2B NA NA NA NA NA NA +10:103693028 10:122488902 SH3PXD2A--HTRA1 BS_M9C4RY4P ARRIBA in-frame 24 0 high [ChimerSeq,INTRACHROMOSOMAL[chr10:18.61Mb]],inversion SH3PXD2A NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA +10:103668608 10:122488902 SH3PXD2A--HTRA1 BS_M9C4RY4P ARRIBA frameshift 2 1 medium [ChimerSeq,INTRACHROMOSOMAL[chr10:18.61Mb]],inversion SH3PXD2A NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA +10:103693028 10:122488902 SH3PXD2A--HTRA1 BS_M9C4RY4P STARFUSION in-frame 28 2 NA [ChimerSeq,INTRACHROMOSOMAL[chr10:18.61Mb]] SH3PXD2A NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA +9:95086286 7:5315004 C9orf3--TNRC18 BS_MA1A3GY0 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr9--chr7]],translocation C9orf3 NA TNRC18 NA NA NA NA NA NA +1:85496166 8:88197306 DDAH1--MMP16 BS_MA1A3GY0 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr1--chr8]],translocation DDAH1 NA MMP16 NA NA NA NA NA NA +2:199433338 X:124086725 SATB2--STAG2 BS_MA1A3GY0 ARRIBA in-frame 31 2 high [INTERCHROMOSOMAL[chr2--chrX]],translocation/5'-5' SATB2 NA STAG2 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA +X:124063935 2:199460532 STAG2--SATB2 BS_MA1A3GY0 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chrX--chr2]],translocation/3'-3' STAG2 NA SATB2 NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_MA2T7ET1 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_MA2T7ET1 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:55888389 3:56080984 ERC2--ERC2 BS_MA2T7ET1 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_MA2T7ET1 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_MB7WN0ZB ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_MB7WN0ZB ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_MB7WN0ZB ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_MB7WN0ZB ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:144429926 2:144431416 ZEB2--ZEB2 BS_MB7WN0ZB ARRIBA frameshift 46 4 high [SELFIE,INTRACHROMOSOMAL[chr2:0.16Mb]],inversion/5'-5' ZEB2 NA ZEB2 NA Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA +2:144431678 2:144429875 ZEB2--ZEB2 BS_MB7WN0ZB ARRIBA other 41 5 high [SELFIE,INTRACHROMOSOMAL[chr2:0.16Mb]],inversion/3'-3' ZEB2 NA ZEB2 NA Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_MBSTWZA6 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_MBSTWZA6 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_MBSTWZA6 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_MBSTWZA6 ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_MBSTWZA6 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_MBSTWZA6 ARRIBA other 7 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_MBSTWZA6 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_MBSTWZA6 ARRIBA in-frame 12 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_MBSTWZA6 ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +19:33017649 19:17935144 RHPN2--CCDC124 BS_MBSTWZA6 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr19:15.03Mb]],inversion RHPN2 NA CCDC124 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_MBSTWZA6 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_MD3DT41J ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_MD3DT41J ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:2595565 8:2705286 AC245123.1--AC246817.2 BS_MD3DT41J ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:-:[42697]],duplication AC245123.1 NA AC246817.2 NA NA NA NA NA NA +8:2595565 8:2678939 AC245123.1--AC246817.2 BS_MD3DT41J ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:-:[42697]],duplication AC245123.1 NA AC246817.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_MD3DT41J ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_MDBT7S5Z ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_MDBT7S5Z ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:20343074 14:49862664 AL355075.4--RN7SL2 BS_MDBT7S5Z STARFUSION other 3 9 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] AL355075.4 NA RN7SL2 NA NA NA NA NA NA +14:20343078 14:49862667 RPPH1--RN7SL2 BS_MDBT7S5Z STARFUSION other 3 9 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RPPH1 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_MDBT7S5Z ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:210035244 2:210015973 AC007038.1--RPE BS_ME3HKN2C ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA +2:210035244 2:210009657 AC007038.1--RPE BS_ME3HKN2C ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ME3HKN2C ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ME3HKN2C ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:219241308 1:219211492 AL360093.1(15811)/AC096642.1(29466)--LYPLAL1 BS_ME3HKN2C ARRIBA other 1 0 low [],duplication AL360093.1 AC096642.1 LYPLAL1 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_ME3HKN2C ARRIBA other 3 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_ME3HKN2C ARRIBA other 10 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +18:65862917 18:65857816 CDH7--CDH7 BS_ME3HKN2C ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_ME3HKN2C ARRIBA other 11 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_ME3HKN2C ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_ME3HKN2C STARFUSION other 10 18 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_ME3HKN2C ARRIBA other 2 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +14:59456438 14:59551436 GPR135--CCDC175 BS_ME3HKN2C ARRIBA other 2 0 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59565275 GPR135--CCDC175 BS_ME3HKN2C ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59543454 GPR135--CCDC175 BS_ME3HKN2C ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_ME3HKN2C ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_ME3HKN2C ARRIBA frameshift 33 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +X:2881224 Y:2814333 GYG2--RNASEH2CP1(24005)/TOMM22P2(13649) BS_ME3HKN2C ARRIBA frameshift 4 0 medium [],translocation GYG2 NA RNASEH2CP1 TOMM22P2 NA NA NA NA NA +X:2881224 Y:2789749 GYG2--SRY(2050)/RNASEH2CP1(78) BS_ME3HKN2C ARRIBA frameshift 3 0 low [],translocation GYG2 NA SRY RNASEH2CP1 NA TranscriptionFactor NA NA NA +1:149607554 1:120556551 LINC00869--AC241952.1 BS_ME3HKN2C ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:28.91Mb]],duplication/5'-5' LINC00869 NA AC241952.1 NA NA NA NA NA NA +8:10480192 8:10436262 LINCR-0001--AC104964.2 BS_ME3HKN2C ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:+:[36253]],duplication LINCR-0001 NA AC104964.2 NA NA NA NA NA NA +7:77951712 7:77920279 PHTF2--PHTF2 BS_ME3HKN2C ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_ME3HKN2C ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_ME3HKN2C ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ME3HKN2C ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:21292164 12:21306988 SLCO1A2--SLCO1A2 BS_ME3HKN2C ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA +4:16323036 4:16256257 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_ME3HKN2C ARRIBA other 1 1 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_ME3HKN2C ARRIBA other 6 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_MF47B9ZW ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_MF47B9ZW ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:176137278 5:176119545 AC139491.5--FAM153B BS_MF47B9ZW ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:+:[4899]],duplication AC139491.5 NA FAM153B NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_MF47B9ZW ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_MF47B9ZW ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_MF47B9ZW ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_MF47B9ZW ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_MF47B9ZW ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +21:40124195 21:40144731 DSCAM--DSCAM BS_MF47B9ZW ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_MF47B9ZW ARRIBA in-frame 34 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_MF47B9ZW ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_MF47B9ZW ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_MF47B9ZW ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_MF47B9ZW ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:210920069 KCNH1--AL590132.1 BS_MF47B9ZW ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_MF47B9ZW ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_MF47B9ZW ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_MF47B9ZW ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +14:46920012 14:47035304 MDGA2--MDGA2 BS_MF47B9ZW ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_MF47B9ZW ARRIBA other 2 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_MF47B9ZW ARRIBA other 5 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_MF47B9ZW ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_MF47B9ZW ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161882444 2:161872293 SLC4A10--SLC4A10 BS_MF47B9ZW ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +2:134550570 2:134869041 TMEM163--CCNT2-AS1 BS_MF47B9ZW ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_MF9X3PKH ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_MF9X3PKH ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:48809642 2:48799306 AC009975.1--ELOBP3(18411)/AC009975.1(10034) BS_MF9X3PKH ARRIBA other 1 2 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_MF9X3PKH ARRIBA in-frame 9 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +9:62806330 9:62818561 LINC01410--LINC01410(5075)/AL512625.2(19187) BS_MF9X3PKH ARRIBA other 1 1 medium [],inversion LINC01410 NA LINC01410 AL512625.2 NA NA NA NA NA +10:73250923 10:73256415 MRPS16--CFAP70 BS_MF9X3PKH ARRIBA in-frame 20 0 high [FA_CancerSupp,INTRACHROMOSOMAL[chr10:0.00Mb],LOCAL_REARRANGEMENT:-:[1066]],duplication MRPS16 NA CFAP70 NA NA NA NA NA NA +10:73251763 10:73256416 MRPS16--CFAP70 BS_MF9X3PKH ARRIBA frameshift 16 0 high [FA_CancerSupp,INTRACHROMOSOMAL[chr10:0.00Mb],LOCAL_REARRANGEMENT:-:[1066]],duplication MRPS16 NA CFAP70 NA NA NA NA NA NA +10:73251763 10:73254055 MRPS16--CFAP70 BS_MF9X3PKH ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr10:0.00Mb],LOCAL_REARRANGEMENT:-:[1066]],duplication MRPS16 NA CFAP70 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_MF9X3PKH ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_MF9X3PKH ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:11460964 22:35332981 AC099489.1--TOM1 BS_MGAMKKBD ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr16--chr22]],translocation AC099489.1 NA TOM1 NA NA NA NA NA NA +15:51622459 1:185301563 DMXL2--IVNS1ABP BS_MGAMKKBD ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr15--chr1]],translocation DMXL2 NA IVNS1ABP NA NA NA NA NA NA +6:36127955 4:168456152 MAPK13--DDX60L BS_MGAMKKBD ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr6--chr4]],translocation MAPK13 NA DDX60L NA Oncogene, Kinase NA NA NA NA +4:82878787 5:157303347 SEC31A--CYFIP2 BS_MGAMKKBD ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr4--chr5]],translocation SEC31A NA CYFIP2 NA NA NA NA NA NA +16:381701 4:1216205 TMEM8A--CTBP1 BS_MGAMKKBD ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation TMEM8A NA CTBP1 NA NA NA NA NA NA +6:137867494 1:183567345 TNFAIP3--NCF2 BS_MGAMKKBD ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr6--chr1]],translocation TNFAIP3 NA NCF2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_MKM0EEN1 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_MKM0EEN1 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:60726410 1:60733522 AC099792.1--AC099792.1 BS_MKM0EEN1 ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing AC099792.1 NA AC099792.1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_MKM0EEN1 ARRIBA other 7 1 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_MKM0EEN1 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +21:10570549 21:10567670 AF254983.1--AF254983.1 BS_MKM0EEN1 ARRIBA other 10 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.12Mb]],duplication/non-canonical_splicing AF254983.1 NA AF254983.1 NA NA NA NA NA NA +9:4718419 9:893912 AK3--DMRT1 BS_MKM0EEN1 ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr9:3.74Mb]],inversion AK3 NA DMRT1 NA NA TranscriptionFactor NA NA NA +22:32273507 22:32268288 AL008723.1--SLC5A4-AS1 BS_MKM0EEN1 STARFUSION other 12 1 NA [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]] AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA +4:15599706 4:15586157 CC2D2A--CC2D2A BS_MKM0EEN1 ARRIBA in-frame 42 6 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing CC2D2A NA CC2D2A NA NA NA NA NA NA +5:19838759 5:19839242 CDH18--CDH18 BS_MKM0EEN1 ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr5:1.10Mb]],duplication/non-canonical_splicing CDH18 NA CDH18 NA NA NA NA NA NA +15:100469378 15:100565265 CERS3--LINS1 BS_MKM0EEN1 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:-:[14374]],duplication CERS3 NA LINS1 NA NA NA NA NA NA +15:100490817 15:100565265 CERS3--LINS1 BS_MKM0EEN1 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:-:[14374]],duplication CERS3 NA LINS1 NA NA NA NA NA NA +15:100544903 15:100565265 CERS3--LINS1 BS_MKM0EEN1 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:-:[14374]],duplication CERS3 NA LINS1 NA NA NA NA NA NA +18:27123887 18:27142905 CHST9--CHST9 BS_MKM0EEN1 ARRIBA frameshift 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr18:0.28Mb]],duplication CHST9 NA CHST9 NA NA NA NA NA NA +11:31241450 11:31307908 DCDC1--DCDC1 BS_MKM0EEN1 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.54Mb]],duplication/non-canonical_splicing DCDC1 NA DCDC1 NA NA NA NA NA NA +2:84816083 2:84796306 DNAH6--DNAH6 BS_MKM0EEN1 ARRIBA in-frame 9 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.30Mb]],duplication/non-canonical_splicing DNAH6 NA DNAH6 NA NA NA NA NA NA +21:40312081 21:40339415 DSCAM--DSCAM BS_MKM0EEN1 ARRIBA in-frame 15 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA +9:95107066 9:95117390 FANCC--FANCC BS_MKM0EEN1 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.33Mb]],duplication/non-canonical_splicing FANCC NA FANCC NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:128840936 7:127516274 FLNC--AC000124.1(30470)/GCC1(64344) BS_MKM0EEN1 ARRIBA frameshift 6 0 medium [],duplication FLNC NA AC000124.1 GCC1 NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_MKM0EEN1 ARRIBA other 13 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:159765099 3:174821748 IQCJ-SCHIP1--NAALADL2 BS_MKM0EEN1 ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr3:14.54Mb]],inversion/3'-3' IQCJ-SCHIP1 NA NAALADL2 NA NA NA NA NA NA +3:37542585 3:33696933 ITGA9--CLASP2 BS_MKM0EEN1 ARRIBA in-frame 25 2 high [INTRACHROMOSOMAL[chr3:3.73Mb]],inversion ITGA9 NA CLASP2 NA Oncogene NA NA NA NA +3:37542585 3:33696933 ITGA9--CLASP2 BS_MKM0EEN1 STARFUSION in-frame 25 2 NA [INTRACHROMOSOMAL[chr3:3.73Mb]] ITGA9 NA CLASP2 NA Oncogene NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_MKM0EEN1 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +18:6973057 18:6980637 LAMA1--LAMA1 BS_MKM0EEN1 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA +1:149607554 1:143974544 LINC00869--FAM72C(2579)/SRGAP2D(543) BS_MKM0EEN1 ARRIBA other 2 0 medium [],duplication LINC00869 NA FAM72C SRGAP2D NA NA NA NA NA +1:219218712 1:219210532 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_MKM0EEN1 ARRIBA other 2 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +2:209696748 2:209692625 MAP2--MAP2 BS_MKM0EEN1 ARRIBA in-frame 22 9 low [SELFIE,INTRACHROMOSOMAL[chr2:0.31Mb]],duplication/non-canonical_splicing MAP2 NA MAP2 NA Oncogene Oncogene NA NA NA +1:230332844 1:230357321 PGBD5--PGBD5 BS_MKM0EEN1 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PGBD5 NA PGBD5 NA NA NA NA NA NA +6:12749790 11:63553065 PHACTR1--HRASLS2 BS_MKM0EEN1 ARRIBA frameshift 11 3 high [INTERCHROMOSOMAL[chr6--chr11]],translocation PHACTR1 NA HRASLS2 NA NA TumorSuppressorGene NA NA NA +6:12749790 11:63558660 PHACTR1--HRASLS2 BS_MKM0EEN1 ARRIBA in-frame 2 5 high [INTERCHROMOSOMAL[chr6--chr11]],translocation PHACTR1 NA HRASLS2 NA NA TumorSuppressorGene NA NA NA +6:12749790 11:63553065 PHACTR1--HRASLS2 BS_MKM0EEN1 STARFUSION frameshift 14 5 NA [INTERCHROMOSOMAL[chr6--chr11]] PHACTR1 NA HRASLS2 NA NA TumorSuppressorGene NA NA NA +6:12749790 11:63466372 PHACTR1--HRASLS5 BS_MKM0EEN1 ARRIBA in-frame 5 1 high [INTERCHROMOSOMAL[chr6--chr11]],translocation PHACTR1 NA HRASLS5 NA NA NA NA NA NA +6:12749790 11:63468465 PHACTR1--HRASLS5 BS_MKM0EEN1 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr6--chr11]],translocation PHACTR1 NA HRASLS5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_MKM0EEN1 ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:159840214 3:174821748 SCHIP1--NAALADL2 BS_MKM0EEN1 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr3:14.54Mb]],inversion/3'-3' SCHIP1 NA NAALADL2 NA NA NA NA NA NA +5:128114681 5:128112814 SLC12A2--SLC12A2 BS_MKM0EEN1 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.11Mb]],duplication/non-canonical_splicing SLC12A2 NA SLC12A2 NA NA NA NA NA NA +20:13093577 20:13072256 SPTLC3--SPTLC3 BS_MKM0EEN1 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.16Mb]],duplication/non-canonical_splicing SPTLC3 NA SPTLC3 NA NA NA NA NA NA +8:93822563 8:93755020 TMEM67(3329)/AC084346.1(11891)--TMEM67 BS_MKM0EEN1 ARRIBA other 1 1 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +21:10527412 21:10514122 TPTE--BAGE2 BS_MKM0EEN1 ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA +21:10524688 21:10514122 TPTE--BAGE2 BS_MKM0EEN1 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA +21:10527412 21:10499475 TPTE--BAGE2 BS_MKM0EEN1 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA +3:167575918 3:167664448 WDR49--WDR49(10465)/PDCD10(18850) BS_MKM0EEN1 ARRIBA frameshift 2 1 medium [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +3:106685809 3:106838212 Y_RNA(169811)/Y_RNA(2869)--LINC00882 BS_MKM0EEN1 ARRIBA other 2 0 medium [],duplication Y_RNA Y_RNA LINC00882 NA NA NA NA NA NA +16:49855735 16:56453263 ZNF423--OGFOD1 BS_MKM0EEN1 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr16:6.59Mb]],inversion ZNF423 NA OGFOD1 NA Oncogene, TranscriptionFactor NA NA NA NA +7:64079328 7:64068891 ZNF727(779)/TRIM60P17(6232)--ZNF727 BS_MKM0EEN1 ARRIBA other 7 0 medium [],duplication ZNF727 TRIM60P17 ZNF727 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_MKP2Y41Z ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_MKP2Y41Z ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_MKP2Y41Z ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +14:49586867 6:52995786 AL139099.5--7SK BS_MKP2Y41Z STARFUSION other 4 8 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +14:49586754 6:52995797 AL139099.5--7SK BS_MKP2Y41Z STARFUSION other 3 8 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +14:20343075 14:49586587 AL355075.4--AL139099.5 BS_MKP2Y41Z STARFUSION other 4 14 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA AL139099.5 NA NA NA NA NA NA +14:20343075 14:49586587 AL355075.4--RN7SL1 BS_MKP2Y41Z STARFUSION other 4 14 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA RN7SL1 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_MKP2Y41Z ARRIBA other 5 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +X:36073364 X:35989319 CFAP47--CFAP47 BS_MKP2Y41Z ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_MKP2Y41Z ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_MKP2Y41Z ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +12:106750793 12:106686884 RFX4--RFX4 BS_MKP2Y41Z ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +14:49586867 6:52995786 RN7SL1--7SK BS_MKP2Y41Z STARFUSION other 4 8 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +14:49586754 6:52995797 RN7SL1--7SK BS_MKP2Y41Z STARFUSION other 3 8 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +14:20343075 14:49586587 RPPH1--AL139099.5 BS_MKP2Y41Z STARFUSION other 4 14 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA AL139099.5 NA NA NA NA NA NA +14:20343075 14:49586587 RPPH1--RN7SL1 BS_MKP2Y41Z STARFUSION other 4 14 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_MKP2Y41Z ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_MM20BVW9 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_MM20BVW9 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:90295226 8:97066009 AC091167.7--CPQ BS_MM20BVW9 ARRIBA other 38 1 high [INTERCHROMOSOMAL[chr15--chr8]],translocation AC091167.7 NA CPQ NA NA NA NA NA NA +15:90266398 8:97066009 AC091167.7--CPQ BS_MM20BVW9 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr15--chr8]],translocation AC091167.7 NA CPQ NA NA NA NA NA NA +15:90295226 8:97066009 AC091167.7--CPQ BS_MM20BVW9 STARFUSION other 39 1 NA [INTERCHROMOSOMAL[chr15--chr8]] AC091167.7 NA CPQ NA NA NA NA NA NA +8:97029494 15:90314298 CPQ--AC091167.7 BS_MM20BVW9 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr8--chr15]],translocation CPQ NA AC091167.7 NA NA NA NA NA NA +8:97029494 15:90354642 CPQ--ZNF774 BS_MM20BVW9 ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr8--chr15]],translocation CPQ NA ZNF774 NA NA TranscriptionFactor NA NA NA +8:97029494 15:90358851 CPQ--ZNF774 BS_MM20BVW9 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr8--chr15]],translocation CPQ NA ZNF774 NA NA TranscriptionFactor NA NA NA +6:64590223 6:64593309 EYS--EYS BS_MM20BVW9 ARRIBA frameshift 13 2 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +15:90295226 8:97066009 GOLGA2P8--CPQ BS_MM20BVW9 ARRIBA other 38 1 high [INTERCHROMOSOMAL[chr15--chr8]],translocation GOLGA2P8 NA CPQ NA NA NA NA NA NA +15:90295226 8:97066009 GOLGA2P8--CPQ BS_MM20BVW9 STARFUSION other 39 1 NA [INTERCHROMOSOMAL[chr15--chr8]] GOLGA2P8 NA CPQ NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_MM20BVW9 ARRIBA other 2 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:114979781 1:239062269 MDFIC--AL590135.1(9366)/AC093426.1(185539) BS_MM20BVW9 ARRIBA frameshift 3 0 high [],translocation MDFIC NA AL590135.1 AC093426.1 NA NA NA NA NA +7:114979781 1:239042641 MDFIC--MIPEPP2(263441)/AL590135.1(10107) BS_MM20BVW9 ARRIBA frameshift 5 3 high [],translocation MDFIC NA MIPEPP2 AL590135.1 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_MM20BVW9 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:26957726 16:68372387 STIM2--SMPD3 BS_MM20BVW9 ARRIBA frameshift 40 6 high [INTERCHROMOSOMAL[chr4--chr16]],translocation STIM2 NA SMPD3 NA NA NA NA NA NA +4:26957726 16:68372387 STIM2--SMPD3 BS_MM20BVW9 STARFUSION other 41 6 NA [INTERCHROMOSOMAL[chr4--chr16]] STIM2 NA SMPD3 NA NA NA NA NA NA +19:44101225 7:49103363 ZNF224--CDC14C(177350)/AC091730.1(126774) BS_MM20BVW9 ARRIBA frameshift 2 1 high [],translocation ZNF224 NA CDC14C AC091730.1 TranscriptionFactor NA NA NA NA +6:52995911 14:49586763 7SK--AL139099.5 BS_MMNRZ1EQ STARFUSION other 6 7 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL139099.5 NA NA NA NA NA NA +6:52995786 14:49586762 7SK--AL139099.5 BS_MMNRZ1EQ STARFUSION other 5 7 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL139099.5 NA NA NA NA NA NA +6:52995911 14:49586763 7SK--RN7SL1 BS_MMNRZ1EQ STARFUSION other 6 7 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL1 NA NA NA NA NA NA +6:52995786 14:49586762 7SK--RN7SL1 BS_MMNRZ1EQ STARFUSION other 5 7 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_MMNRZ1EQ ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_MMNRZ1EQ ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:20343161 6:52995633 AL355075.4--7SK BS_MMNRZ1EQ STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr14--chr1]] AL355075.4 NA 7SK NA NA NA NA NA NA +6:52995909 9:35657865 RN7SK--RMRP BS_MMNRZ1EQ STARFUSION other 4 9 NA [INTERCHROMOSOMAL[chr6--chr9]] RN7SK NA RMRP NA NA Oncogene NA NA NA +14:20343161 6:52995633 RPPH1--7SK BS_MMNRZ1EQ STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr14--chr1]] RPPH1 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_MMNRZ1EQ ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_MN5XVP5A ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_MN5XVP5A ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:44958062 17:47650386 AC015936.1(9123)/C1QL1(1631)--KPNB1 BS_MN5XVP5A ARRIBA other 13 0 high [],deletion AC015936.1 C1QL1 KPNB1 NA NA NA NA NA NA +11:22301280 11:23103355 AC104009.1--AC006299.1(157962)/AC090092.1(61545) BS_MN5XVP5A ARRIBA other 7 1 medium [],inversion AC104009.1 NA AC006299.1 AC090092.1 NA NA NA NA NA +6:132070840 6:134933032 AL133346.1--ALDH8A1 BS_MN5XVP5A ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr6:2.84Mb]],duplication/3'-3' AL133346.1 NA ALDH8A1 NA NA NA NA NA NA +9:22217449 9:22674443 AL157937.1(2777)/DMRTA1(229392)--LINC01239 BS_MN5XVP5A ARRIBA other 8 0 medium [],deletion AL157937.1 DMRTA1 LINC01239 NA NA NA TranscriptionFactor NA NA +11:46493608 11:36709514 AMBRA1--AC104042.1(11647)/SNORA31(992611) BS_MN5XVP5A ARRIBA frameshift 3 0 high [],inversion AMBRA1 NA AC104042.1 SNORA31 NA NA NA NA NA +11:46593828 17:787965 AMBRA1--MRM3 BS_MN5XVP5A ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr11--chr17]],translocation AMBRA1 NA MRM3 NA NA NA NA NA NA +11:46593828 17:791534 AMBRA1--MRM3 BS_MN5XVP5A ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr11--chr17]],translocation AMBRA1 NA MRM3 NA NA NA NA NA NA +11:34888752 11:34642628 APIP--EHF BS_MN5XVP5A ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr11:0.19Mb]],inversion APIP NA EHF NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +1:23484005 1:23210869 ASAP3--HTR1D(16140)/AL109936.1(33896) BS_MN5XVP5A ARRIBA frameshift 2 0 medium [],inversion ASAP3 NA HTR1D AL109936.1 NA NA NA NA NA +12:14481185 4:34610957 ATF7IP--LINC02484(341210)/AC093689.1(46649) BS_MN5XVP5A ARRIBA frameshift 9 0 high [],translocation ATF7IP NA LINC02484 AC093689.1 Oncogene NA NA NA NA +11:46650317 11:46548500 ATG13--AMBRA1 BS_MN5XVP5A ARRIBA frameshift 4 0 high [CCLE,ChimerSeq,INTRACHROMOSOMAL[chr11:0.02Mb],LOCAL_INVERSION:+:-:[23402]],inversion ATG13 NA AMBRA1 NA NA NA NA NA NA +17:42501304 17:47880847 ATP6V0A1--AC018521.7 BS_MN5XVP5A ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr17:5.36Mb]],deletion/5'-5' ATP6V0A1 NA AC018521.7 NA NA NA NA NA NA +12:32107544 6:163314827 BICD1--PACRG BS_MN5XVP5A ARRIBA frameshift 11 0 high [INTERCHROMOSOMAL[chr12--chr6]],translocation BICD1 NA PACRG NA NA TumorSuppressorGene NA NA NA +12:32107544 6:163312779 BICD1--PACRG BS_MN5XVP5A ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr6]],translocation BICD1 NA PACRG NA NA TumorSuppressorGene NA NA NA +11:46809400 11:24181445 CKAP5--AC099842.1(287888)/AC015771.1(54032) BS_MN5XVP5A ARRIBA frameshift 3 0 medium [],inversion CKAP5 NA AC099842.1 AC015771.1 NA NA NA NA NA +22:11068154 22:10752913 CU104787.1--U2(16630)/CU459211.1(186475) BS_MN5XVP5A ARRIBA other 3 0 medium [],inversion CU104787.1 NA U2 CU459211.1 NA NA NA NA NA +11:6625597 11:34204690 DCHS1--ABTB2 BS_MN5XVP5A ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr11:27.50Mb]],duplication DCHS1 NA ABTB2 NA NA Oncogene NA NA NA +21:46509376 11:6280546 DIP2A--CCKBR(8419)/AC068733.2(16643) BS_MN5XVP5A ARRIBA frameshift 2 1 high [],translocation DIP2A NA CCKBR AC068733.2 NA NA NA NA NA +3:197059889 3:196631645 DLG1--LINC01063 BS_MN5XVP5A ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr3:0.41Mb]],deletion DLG1 NA LINC01063 NA TumorSuppressorGene, Oncogene NA NA NA NA +11:6234543 11:47892561 FAM160A2--NUP160(44006)/AC023232.1(12762) BS_MN5XVP5A ARRIBA other 4 0 medium [],inversion FAM160A2 NA NUP160 AC023232.1 NA NA NA NA NA +12:26938710 4:29503989 FGFR1OP2--AC092593.1(36139)/U6(6646) BS_MN5XVP5A ARRIBA other 10 1 high [],translocation FGFR1OP2 NA AC092593.1 U6 NA NA NA NA NA +22:46577290 6:132070941 GRAMD4--AL133346.1 BS_MN5XVP5A ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation/5'-5' GRAMD4 NA AL133346.1 NA NA NA NA NA NA +22:46577290 6:134933032 GRAMD4--ALDH8A1 BS_MN5XVP5A ARRIBA other 3 1 high [INTERCHROMOSOMAL[chr22--chr6]],translocation GRAMD4 NA ALDH8A1 NA NA NA NA NA NA +1:41918413 1:23195001 HIVEP3--HTR1D(272)/AL109936.1(49764) BS_MN5XVP5A ARRIBA other 7 0 high [],deletion HIVEP3 NA HTR1D AL109936.1 TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA +12:26832690 4:29246182 ITPR2--LINC02472(25020)/AC092593.2(160918) BS_MN5XVP5A ARRIBA frameshift 2 1 high [],translocation ITPR2 NA LINC02472 AC092593.2 NA NA NA NA NA +22:29883359 6:135936707 MTMR3--PDE7B BS_MN5XVP5A ARRIBA other 4 0 high [INTERCHROMOSOMAL[chr22--chr6]],translocation/5'-5' MTMR3 NA PDE7B NA Oncogene NA NA NA NA +22:29979052 6:126008392 MTMR3--TRMT11 BS_MN5XVP5A ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr22--chr6]],translocation MTMR3 NA TRMT11 NA Oncogene NA NA NA NA +1:11209311 1:10594602 MTOR--PEX14 BS_MN5XVP5A ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr1:0.48Mb]],deletion/5'-5' MTOR NA PEX14 NA CosmicCensus, Oncogene, Kinase NA NA NA NA +11:21370948 11:45727498 NELL1--AC044839.1 BS_MN5XVP5A ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr11:24.15Mb]],inversion/3'-3' NELL1 NA AC044839.1 NA NA NA NA NA NA +11:21370948 11:45751208 NELL1--AC044839.2 BS_MN5XVP5A ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr11:24.18Mb]],inversion NELL1 NA AC044839.2 NA NA NA NA NA NA +4:30724596 4:48025068 PCDH7--NIPAL1 BS_MN5XVP5A ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr4:16.77Mb]],deletion PCDH7 NA NIPAL1 NA NA NA NA NA NA +1:10536297 1:11285644 PEX14--UBIAD1 BS_MN5XVP5A ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.64Mb]],deletion PEX14 NA UBIAD1 NA NA TumorSuppressorGene NA NA NA +22:31648101 22:32239090 PISD--SLC5A4 BS_MN5XVP5A ARRIBA in-frame 6 0 high [INTRACHROMOSOMAL[chr22:0.56Mb]],duplication PISD NA SLC5A4 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_MN5XVP5A ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:3967682 3:197149796 STIM1--DLG1 BS_MN5XVP5A ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr11--chr3]],translocation STIM1 NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA +11:3967682 3:197142768 STIM1--DLG1 BS_MN5XVP5A ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr11--chr3]],translocation STIM1 NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA +17:41949349 17:48634551 TTC25--HOXB-AS4 BS_MN5XVP5A ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr17:6.66Mb]],deletion TTC25 NA HOXB-AS4 NA NA NA NA NA NA +17:41955317 17:48634551 TTC25--HOXB-AS4 BS_MN5XVP5A ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:6.66Mb]],deletion TTC25 NA HOXB-AS4 NA NA NA NA NA NA +16:383429 16:314683 Z97634.1--AXIN1 BS_MN5XVP5A ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr16:0.03Mb],LOCAL_INVERSION:+:-:[29424]],inversion Z97634.1 NA AXIN1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +19:23136043 12:14423909 ZNF730--ATF7IP BS_MN5XVP5A ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr19--chr12]],translocation ZNF730 NA ATF7IP NA TranscriptionFactor Oncogene NA NA NA +2:25799385 2:25758511 ASXL2--ASXL2 BS_MQCKXD60 ARRIBA frameshift 2 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.14Mb]],inversion/5'-5' ASXL2 NA ASXL2 NA CosmicCensus CosmicCensus NA NA NA +2:175080660 2:172332634 ATF2--AC104088.1(8897)/AC078883.4(91173) BS_MQCKXD60 ARRIBA frameshift 3 0 high [],deletion ATF2 NA AC104088.1 AC078883.4 Oncogene, TranscriptionFactor NA NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_MQCKXD60 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +2:25243962 2:141209199 DNMT3A--LRP1B BS_MQCKXD60 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:114.89Mb]],inversion/5'-5' DNMT3A NA LRP1B NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA +14:100955949 14:100913432 MEG8--MEG8 BS_MQCKXD60 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA +2:2284404 2:806249 MYT1L--LINC01115 BS_MQCKXD60 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr2:0.92Mb]],deletion MYT1L NA LINC01115 NA TranscriptionFactor NA NA NA NA +2:229795179 2:229805883 TRIP12--TRIP12 BS_MQCKXD60 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.16Mb]],duplication/non-canonical_splicing TRIP12 NA TRIP12 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_MT15SGJN ARRIBA other 2 2 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +1:77068843 1:77044204 AL035409.1--ST6GALNAC5 BS_MT15SGJN STARFUSION other 2 4 NA [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:+:[2209]] AL035409.1 NA ST6GALNAC5 NA NA NA NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_MT15SGJN ARRIBA in-frame 144 25 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_MT15SGJN STARFUSION in-frame 152 25 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +15:92974950 15:92955423 CHD2--CHD2 BS_MT15SGJN ARRIBA in-frame 18 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +2:195816628 2:195853528 DNAH7--DNAH7 BS_MT15SGJN ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA +11:47765270 11:62356325 FNBP4--ASRGL1 BS_MT15SGJN ARRIBA in-frame 7 0 high [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA +11:47765270 11:62337967 FNBP4--ASRGL1 BS_MT15SGJN ARRIBA in-frame 4 0 high [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA +11:47765270 11:62356987 FNBP4--ASRGL1 BS_MT15SGJN ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA +11:47765270 11:62356325 FNBP4--ASRGL1 BS_MT15SGJN STARFUSION in-frame 7 0 NA [INTRACHROMOSOMAL[chr11:14.57Mb]] FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_MT15SGJN ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +11:67321333 11:40782463 RAD9A--LRRC4C BS_MT15SGJN ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr11:25.86Mb]],duplication/5'-5' RAD9A NA LRRC4C NA Oncogene NA NA NA NA +3:181231846 1:235127925 RNU6-4P--SNORA14B BS_MT15SGJN STARFUSION other 8 0 NA [INTERCHROMOSOMAL[chr3--chr1]] RNU6-4P NA SNORA14B NA NA NA NA NA NA +3:181231845 6:159780370 RNU6-4P--SNORA20 BS_MT15SGJN STARFUSION other 9 0 NA [INTERCHROMOSOMAL[chr3--chrY]] RNU6-4P NA SNORA20 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--METTL12 BS_MT15SGJN STARFUSION other 16 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--SNORA57 BS_MT15SGJN STARFUSION other 16 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_MT15SGJN ARRIBA other 10 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_MV6ASWV9 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_MV6ASWV9 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_MV6ASWV9 STARFUSION other 13 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +7:69599962 12:96223565 AUTS2--ELK3 BS_MV6ASWV9 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr7--chr12]],translocation AUTS2 NA ELK3 NA NA Oncogene, TranscriptionFactor NA NA NA +3:45146206 12:63983947 CDCP1--SRGAP1 BS_MV6ASWV9 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr3--chr12]],translocation CDCP1 NA SRGAP1 NA TumorSuppressorGene NA NA NA NA +21:37420384 2:62590577 DYRK1A--AC092155.1 BS_MV6ASWV9 ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr21--chr2]],translocation DYRK1A NA AC092155.1 NA Kinase, Oncogene, Kinase NA NA NA NA +21:37420384 2:62631565 DYRK1A--AC092155.1 BS_MV6ASWV9 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr21--chr2]],translocation DYRK1A NA AC092155.1 NA Kinase, Oncogene, Kinase NA NA NA NA +21:37367628 2:62590577 DYRK1A--AC092155.1 BS_MV6ASWV9 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr21--chr2]],translocation DYRK1A NA AC092155.1 NA Kinase, Oncogene, Kinase NA NA NA NA +18:11495474 9:78300602 LINC01255--PSAT1 BS_MV6ASWV9 ARRIBA other 10 0 high [INTERCHROMOSOMAL[chr18--chr9]],translocation/3'-3' LINC01255 NA PSAT1 NA NA NA NA NA NA +15:69677640 15:69563116 PCAT29--DRAIC BS_MV6ASWV9 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +9:78297270 18:11495640 PSAT1--LINC01255 BS_MV6ASWV9 ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr9--chr18]],translocation/5'-5' PSAT1 NA LINC01255 NA NA NA NA NA NA +13:49555515 8:68458440 RCBTB1--C8orf34 BS_MV6ASWV9 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr13--chr8]],translocation/5'-5' RCBTB1 NA C8orf34 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_MV6ASWV9 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:63844883 3:45118621 SRGAP1--CDCP1 BS_MV6ASWV9 ARRIBA in-frame 19 0 high [INTERCHROMOSOMAL[chr12--chr3]],translocation SRGAP1 NA CDCP1 NA NA TumorSuppressorGene NA NA NA +12:63844883 3:45112445 SRGAP1--CDCP1 BS_MV6ASWV9 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr12--chr3]],translocation SRGAP1 NA CDCP1 NA NA TumorSuppressorGene NA NA NA +12:63844883 3:45118621 SRGAP1--CDCP1 BS_MV6ASWV9 STARFUSION in-frame 19 1 NA [INTERCHROMOSOMAL[chr12--chr3]] SRGAP1 NA CDCP1 NA NA TumorSuppressorGene NA NA NA +13:113611062 X:134804101 TFDP1--FAM122C BS_MV6ASWV9 ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr13--chrX]],translocation TFDP1 NA FAM122C NA TranscriptionFactor NA NA NA NA +13:113611062 X:134696457 TFDP1--PLAC1 BS_MV6ASWV9 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr13--chrX]],translocation/5'-5' TFDP1 NA PLAC1 NA TranscriptionFactor NA NA NA NA +19:43607986 X:106720784 ZNF428--RNF128 BS_MV6ASWV9 ARRIBA frameshift 6 3 medium [INTERCHROMOSOMAL[chr19--chrX]],translocation/5'-5' ZNF428 NA RNF128 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_MVW01FPB ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_MVW01FPB ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:96342998 15:96334076 AC103746.1--NR2F2 BS_MVW01FPB ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_REARRANGEMENT:+:[2690]],duplication AC103746.1 NA NR2F2 NA NA TranscriptionFactor NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_MVW01FPB ARRIBA other 28 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_MVW01FPB ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_MVW01FPB ARRIBA other 18 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +22:23854725 2:119245489 DERL3(15597)/AP000350.5(1702)--STEAP3 BS_MVW01FPB ARRIBA other 5 0 medium [],translocation DERL3 AP000350.5 STEAP3 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_MVW01FPB ARRIBA other 28 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_MVW01FPB ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_MVW01FPB ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_MWWZBQ60 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_MWWZBQ60 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_MWWZBQ60 ARRIBA other 10 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_MWWZBQ60 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93557472 AC110023.1--AC091078.1 BS_MWWZBQ60 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +3:195958926 3:195960086 AC124944.3(4441)/SDHAP1(822)--SDHAP1 BS_MWWZBQ60 ARRIBA other 2 0 low [],duplication AC124944.3 SDHAP1 SDHAP1 NA NA NA NA NA NA +5:91102340 5:90781430 ADGRV1--ADGRV1 BS_MWWZBQ60 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_MWWZBQ60 ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +5:61761022 5:61703866 C5orf64(9259)/AC026434.2(70925)--C5orf64 BS_MWWZBQ60 ARRIBA other 1 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_MWWZBQ60 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +14:89870643 14:89932627 EFCAB11--EFCAB11 BS_MWWZBQ60 ARRIBA other 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_MWWZBQ60 ARRIBA other 18 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_MWWZBQ60 ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:89580558 4:34858290 AC006453.2--AC093913.1(143692)/snoU13(107951) BS_MX23ZY0Y ARRIBA other 5 0 medium [],translocation AC006453.2 NA AC093913.1 snoU13 NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_MX23ZY0Y ARRIBA other 27 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +4:61676935 4:47903323 ADGRL3--NFXL1 BS_MX23ZY0Y ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr4:13.29Mb]],inversion ADGRL3 NA NFXL1 NA NA TranscriptionFactor NA NA NA +4:61676935 4:47894302 ADGRL3--NFXL1 BS_MX23ZY0Y ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:13.29Mb]],inversion ADGRL3 NA NFXL1 NA NA TranscriptionFactor NA NA NA +11:22193532 4:136813731 ANO5--LINC02511 BS_MX23ZY0Y ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr11--chr4]],translocation ANO5 NA LINC02511 NA NA NA NA NA NA +10:72196811 10:68761007 ASCC1--CCAR1 BS_MX23ZY0Y ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr10:3.30Mb]],inversion ASCC1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA +10:72203427 10:68761007 ASCC1--CCAR1 BS_MX23ZY0Y ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:3.30Mb]],inversion ASCC1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA +10:72128082 10:66595835 ASCC1--CTNNA3 BS_MX23ZY0Y ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr10:4.40Mb]],inversion/5'-5' ASCC1 NA CTNNA3 NA NA TumorSuppressorGene NA NA NA +5:173616200 17:21775839 BOD1--AC243725.1 BS_MX23ZY0Y ARRIBA frameshift 9 0 high [INTERCHROMOSOMAL[chr5--chr17]],translocation BOD1 NA AC243725.1 NA NA NA NA NA NA +5:173616200 17:21782880 BOD1--AC243725.1 BS_MX23ZY0Y ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr5--chr17]],translocation BOD1 NA AC243725.1 NA NA NA NA NA NA +10:68761192 10:86206648 CCAR1--GRID1 BS_MX23ZY0Y ARRIBA frameshift 38 2 high [INTRACHROMOSOMAL[chr10:16.81Mb]],inversion CCAR1 NA GRID1 NA TumorSuppressorGene NA NA NA NA +10:68761192 10:86206648 CCAR1--GRID1 BS_MX23ZY0Y STARFUSION frameshift 39 2 NA [INTRACHROMOSOMAL[chr10:16.81Mb]] CCAR1 NA GRID1 NA TumorSuppressorGene NA NA NA NA +10:125110990 10:68736876 CTBP2--CCAR1 BS_MX23ZY0Y ARRIBA other 16 0 high [INTRACHROMOSOMAL[chr10:56.19Mb]],inversion CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA +10:125160319 10:68736876 CTBP2--CCAR1 BS_MX23ZY0Y ARRIBA other 9 0 high [INTRACHROMOSOMAL[chr10:56.19Mb]],inversion CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA +10:125088191 10:68736876 CTBP2--CCAR1 BS_MX23ZY0Y ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr10:56.19Mb]],inversion CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA +10:125110990 10:68736876 CTBP2--CCAR1 BS_MX23ZY0Y STARFUSION other 16 1 NA [INTRACHROMOSOMAL[chr10:56.19Mb]] CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA +13:107865682 13:80337756 FAM155A--SPRY2 BS_MX23ZY0Y ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr13:26.82Mb]],deletion FAM155A NA SPRY2 NA NA TumorSuppressorGene NA NA NA +10:86138819 10:72216934 GRID1--ASCC1 BS_MX23ZY0Y ARRIBA frameshift 30 3 high [INTRACHROMOSOMAL[chr10:13.38Mb]],deletion GRID1 NA ASCC1 NA NA NA NA NA NA +10:86138819 10:72216934 GRID1--ASCC1 BS_MX23ZY0Y STARFUSION other 32 4 NA [INTRACHROMOSOMAL[chr10:13.38Mb]] GRID1 NA ASCC1 NA NA NA NA NA NA +10:100536661 10:132025294 HIF1AN--AL162274.3(25448)/JAKMIP3(79377) BS_MX23ZY0Y ARRIBA frameshift 6 0 high [],inversion HIF1AN NA AL162274.3 JAKMIP3 NA NA NA NA NA +10:65615761 10:103348944 LINC01515--PCGF6 BS_MX23ZY0Y ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:37.53Mb]],inversion LINC01515 NA PCGF6 NA NA TranscriptionFactor NA NA NA +11:1256609 11:1054239 MIR6744--AC139749.1 BS_MX23ZY0Y ARRIBA other 2 2 medium [INTRACHROMOSOMAL[chr11:0.20Mb]],inversion/3'-3' MIR6744 NA AC139749.1 NA NA NA NA NA NA +11:1546174 11:3735324 MOB2(44927)/DUSP8(7870)--NUP98 BS_MX23ZY0Y ARRIBA other 3 0 high [],inversion MOB2 DUSP8 NUP98 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +10:133402773 10:80233664 MTG1--AL513174.1 BS_MX23ZY0Y ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr10:53.15Mb]],duplication MTG1 NA AL513174.1 NA NA NA NA NA NA +11:1256609 11:1054239 MUC5B--AC139749.1 BS_MX23ZY0Y ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr11:0.17Mb]],inversion/3'-3' MUC5B NA AC139749.1 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_MX23ZY0Y ARRIBA other 27 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +11:3713818 11:20560941 NUP98--PRMT3(51647)/HMGB1P40(13245) BS_MX23ZY0Y ARRIBA frameshift 3 0 high [],duplication NUP98 NA PRMT3 HMGB1P40 TumorSuppressorGene, CosmicCensus, Oncogene TranscriptionFactor NA NA NA +10:70479059 10:125039155 PALD1--CTBP2 BS_MX23ZY0Y ARRIBA other 7 0 high [INTRACHROMOSOMAL[chr10:54.42Mb]],inversion PALD1 NA CTBP2 NA NA NA NA NA NA +10:103345024 10:65572935 PCGF6--LINC01515 BS_MX23ZY0Y ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr10:37.53Mb]],inversion PCGF6 NA LINC01515 NA TranscriptionFactor NA NA NA NA +10:103345024 10:65585485 PCGF6--LINC01515 BS_MX23ZY0Y ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr10:37.53Mb]],inversion PCGF6 NA LINC01515 NA TranscriptionFactor NA NA NA NA +10:103333925 10:65585485 PCGF6--LINC01515 BS_MX23ZY0Y ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:37.53Mb]],inversion PCGF6 NA LINC01515 NA TranscriptionFactor NA NA NA NA +11:479152 11:10042981 PTDSS2--SBF2 BS_MX23ZY0Y ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:9.29Mb]],inversion PTDSS2 NA SBF2 NA NA NA NA NA NA +11:48112983 11:11839557 PTPRJ--MIR8070(56335)/USP47(1866) BS_MX23ZY0Y ARRIBA frameshift 4 2 high [],inversion PTPRJ NA MIR8070 USP47 TumorSuppressorGene, Oncogene NA NA NA NA +4:42018170 4:63474138 SLC30A9--AC093730.1 BS_MX23ZY0Y ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr4:21.38Mb]],inversion SLC30A9 NA AC093730.1 NA NA NA NA NA NA +4:42001780 4:63474138 SLC30A9--AC093730.1 BS_MX23ZY0Y ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr4:21.38Mb]],inversion SLC30A9 NA AC093730.1 NA NA NA NA NA NA +4:42018170 4:63620822 SLC30A9--AC093730.1(126544)/TECRL(654435) BS_MX23ZY0Y ARRIBA frameshift 3 0 high [],inversion SLC30A9 NA AC093730.1 TECRL NA NA NA NA NA +4:42001780 4:63494332 SLC30A9--AC093730.1(54)/TECRL(780925) BS_MX23ZY0Y ARRIBA frameshift 1 0 low [],inversion SLC30A9 NA AC093730.1 TECRL NA NA NA NA NA +7:47396800 7:43648652 TNS3--COA1 BS_MX23ZY0Y ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr7:3.55Mb]],deletion TNS3 NA COA1 NA NA NA NA NA NA +7:47396800 7:43665722 TNS3--COA1 BS_MX23ZY0Y ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:3.55Mb]],deletion TNS3 NA COA1 NA NA NA NA NA NA +9:33912098 7:47104016 UBE2R2--AC004870.3(24888)/TNS3(171138) BS_MX23ZY0Y ARRIBA frameshift 8 0 high [],translocation UBE2R2 NA AC004870.3 TNS3 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_MY9D8XZ1 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_MY9D8XZ1 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:126039294 10:126046132 ADAM12--ADAM12 BS_MY9D8XZ1 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr10:0.38Mb]],duplication/non-canonical_splicing ADAM12 NA ADAM12 NA Oncogene Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_MY9D8XZ1 ARRIBA other 4 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +7:33650755 7:33357855 BBS9(44687)/AC008080.1(75226)--BBS9 BS_MY9D8XZ1 ARRIBA other 1 1 high [],duplication BBS9 AC008080.1 BBS9 NA NA NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_MY9D8XZ1 ARRIBA other 6 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_MY9D8XZ1 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:56080817 3:12600415 ERC2--RAF1 BS_MY9D8XZ1 ARRIBA in-frame 1 1 high [INTRACHROMOSOMAL[chr3:42.84Mb]],deletion ERC2 NA RAF1 NA Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_MY9D8XZ1 STARFUSION other 84 40 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_MY9D8XZ1 ARRIBA other 5 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_MY9D8XZ1 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_MY9D8XZ1 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_N0877CX1 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_N0877CX1 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +22:23182239 22:25032609 BCR--KIAA1671 BS_N0877CX1 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr22:1.63Mb]],deletion BCR NA KIAA1671 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_N0877CX1 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995780 14:49862669 7SK--RN7SL2 BS_N1E0H8YQ STARFUSION other 5 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995808 14:49862666 7SK--RN7SL2 BS_N1E0H8YQ STARFUSION other 5 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995913 14:49862667 7SK--RN7SL2 BS_N1E0H8YQ STARFUSION other 4 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995789 14:49862666 7SK--RN7SL2 BS_N1E0H8YQ STARFUSION other 4 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995864 14:49862665 7SK--RN7SL2 BS_N1E0H8YQ STARFUSION other 4 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_N1E0H8YQ ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_N1E0H8YQ ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_N1E0H8YQ ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_N1E0H8YQ ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_N1E0H8YQ ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +5:95961586 5:96675539 ELL2--CAST BS_N1E0H8YQ ARRIBA other 2 1 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr5:0.56Mb]],deletion/3'-3' ELL2 NA CAST NA NA NA NA NA TCGAFusion +4:93238490 4:93084995 GRID2--GRID2 BS_N1E0H8YQ ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_N1E0H8YQ ARRIBA other 4 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_N1E0H8YQ ARRIBA in-frame 5 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +12:69910930 12:69855280 MYRFL--MYRFL BS_N1E0H8YQ ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing MYRFL NA MYRFL NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_N1E0H8YQ ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_N1E0H8YQ ARRIBA other 5 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +17:72141685 17:72186404 SOX9-AS1--SOX9-AS1 BS_N1E0H8YQ ARRIBA other 2 1 medium [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication SOX9-AS1 NA SOX9-AS1 NA NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_N1E0H8YQ ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +7:137521866 7:137609609 DGKI--DGKI BS_N210XMKR ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_N210XMKR ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_N4B1SZZH ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_N4B1SZZH ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +15:23979211 15:23941697 PWRN4--AC021439.1 BS_N4B1SZZH ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.03Mb],LOCAL_REARRANGEMENT:+:[33456]],duplication PWRN4 NA AC021439.1 NA NA NA NA NA NA +7:27769834 7:68001057 TAX1BP1--AC092648.1(230589)/AC092637.1(19196) BS_N4B1SZZH ARRIBA frameshift 3 0 medium [],inversion TAX1BP1 NA AC092648.1 AC092637.1 NA NA NA NA NA +9:70827847 9:70864511 TRPM3--TRPM3 BS_N4B1SZZH ARRIBA frameshift 33 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_N4B1SZZH ARRIBA other 6 2 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_N5B2CZMH ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_N5B2CZMH ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:21369967 10:21172477 AL158209.1--NEBL BS_N5B2CZMH STARFUSION other 15 4 NA [INTRACHROMOSOMAL[chr10:0.17Mb]] AL158209.1 NA NEBL NA NA NA NA NA NA +16:5078016 6:39882235 ALG1--AL590999.1 BS_N5B2CZMH ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr16--chr6]],translocation/5'-5' ALG1 NA AL590999.1 NA NA NA NA NA NA +8:60743097 3:86978802 CHD7--VGLL3 BS_N5B2CZMH ARRIBA in-frame 25 7 high [INTERCHROMOSOMAL[chr8--chr3]],translocation CHD7 NA VGLL3 NA NA NA NA NA NA +8:60743097 3:86978643 CHD7--VGLL3 BS_N5B2CZMH ARRIBA in-frame 6 3 medium [INTERCHROMOSOMAL[chr8--chr3]],translocation CHD7 NA VGLL3 NA NA NA NA NA NA +8:60743097 3:86978802 CHD7--VGLL3 BS_N5B2CZMH STARFUSION in-frame 25 7 NA [INTERCHROMOSOMAL[chr8--chr3]] CHD7 NA VGLL3 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_N5B2CZMH ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:159681176 15:40034242 SOD2--EIF2AK4 BS_N5B2CZMH ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr6--chr15]],translocation SOD2 NA EIF2AK4 NA TumorSuppressorGene Kinase NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_N5DVEJXT ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_N5DVEJXT ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_N5DVEJXT ARRIBA in-frame 410 77 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_N5DVEJXT ARRIBA in-frame 24 0 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_N5DVEJXT ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_N5DVEJXT STARFUSION in-frame 422 103 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_N5DVEJXT ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +11:65553447 11:47401142 LTBP3--AC090559.1 BS_N5DVEJXT ARRIBA frameshift 14 11 medium [INTRACHROMOSOMAL[chr11:18.13Mb]],inversion/5'-5' LTBP3 NA AC090559.1 NA Oncogene NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_N5DVEJXT ARRIBA frameshift 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_N5DVEJXT ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +13:19751271 13:19835689 PSPC1--ZMYM5 BS_N5DVEJXT ARRIBA frameshift 2 2 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_N5DVEJXT ARRIBA frameshift 3 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_N5DVEJXT ARRIBA frameshift 1 2 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_N5DVEJXT ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_N5DVEJXT ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +17:64561500 17:64578576 SMURF2--SMURF2 BS_N5DVEJXT ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.12Mb]],duplication/non-canonical_splicing SMURF2 NA SMURF2 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_N5DVEJXT ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_N6N147BY ARRIBA other 1 2 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:83207331 15:82347629 HDGFL3--GOLGA6L10 BS_N6N147BY ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr15:0.76Mb]],deletion HDGFL3 NA GOLGA6L10 NA NA NA NA NA NA +8:42048378 8:41459009 KAT6A--AC016868.1(18590)/GOLGA7(31387) BS_N6N147BY ARRIBA frameshift 26 11 high [],deletion KAT6A NA AC016868.1 GOLGA7 CosmicCensus, Oncogene NA NA NA NA +19:54448165 16:27791467 LENG8-AS1--GSG1L BS_N6N147BY ARRIBA other 8 1 high [INTERCHROMOSOMAL[chr19--chr16]],translocation LENG8-AS1 NA GSG1L NA NA NA NA NA NA +19:54448165 16:27791467 LENG8-AS1--GSG1L BS_N6N147BY STARFUSION other 8 1 NA [INTERCHROMOSOMAL[chr19--chr16]] LENG8-AS1 NA GSG1L NA NA NA NA NA NA +19:54106011 19:54042369 NDUFA3--VSTM1 BS_N6N147BY ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr19:0.04Mb],LOCAL_INVERSION:+:-:[38775]],inversion NDUFA3 NA VSTM1 NA NA NA NA NA NA +19:54103188 19:54042369 NDUFA3--VSTM1 BS_N6N147BY ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr19:0.04Mb],LOCAL_INVERSION:+:-:[38775]],inversion NDUFA3 NA VSTM1 NA NA NA NA NA NA +19:54102888 19:54042369 NDUFA3--VSTM1 BS_N6N147BY ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr19:0.04Mb],LOCAL_INVERSION:+:-:[38775]],inversion NDUFA3 NA VSTM1 NA NA NA NA NA NA +19:54436158 19:53650224 TTYH1--DPRX(13215)/RNU6-698P(3461) BS_N6N147BY ARRIBA frameshift 63 22 high [],duplication TTYH1 NA DPRX RNU6-698P Oncogene TranscriptionFactor NA NA NA +X:24546477 X:24494742 AC004656.1--PDK3 BS_N6NE6B3W ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chrX:0.01Mb],LOCAL_REARRANGEMENT:+:[5679]],duplication AC004656.1 NA PDK3 NA NA NA NA NA NA +14:72594327 14:72619984 AC004828.1--DPF3 BS_N6NE6B3W ARRIBA other 15 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA +14:72594327 14:72629736 AC004828.1--DPF3 BS_N6NE6B3W ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_N6NE6B3W ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_N6NE6B3W ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:155503021 7:155509097 AC009403.2--AC009403.2 BS_N6NE6B3W ARRIBA other 20 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA +17:10880720 17:10847892 AC015908.2--PIRT(9447)/AC015908.2(1649) BS_N6NE6B3W ARRIBA other 6 0 medium [],duplication AC015908.2 NA PIRT AC015908.2 NA NA NA NA NA +5:32106124 5:32143880 AC025178.1--GOLPH3 BS_N6NE6B3W ARRIBA other 1 3 medium [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[2763]],duplication AC025178.1 NA GOLPH3 NA NA NA NA NA NA +5:32121495 5:32135686 AC025178.1--GOLPH3 BS_N6NE6B3W ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[2763]],duplication AC025178.1 NA GOLPH3 NA NA NA NA NA NA +5:32121860 5:32143880 AC025178.1--GOLPH3 BS_N6NE6B3W ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:-:[2763]],duplication AC025178.1 NA GOLPH3 NA NA NA NA NA NA +8:79916222 8:79919148 AC036214.1(44463)/MRPS28(2495)--AC036214.3 BS_N6NE6B3W ARRIBA other 1 0 low [],duplication AC036214.1 MRPS28 AC036214.3 NA NA NA NA NA NA +8:79916222 8:79919148 AC036214.1(44463)/MRPS28(2495)--MRPS28 BS_N6NE6B3W ARRIBA other 1 0 low [],duplication AC036214.1 MRPS28 MRPS28 NA NA NA NA NA NA +3:158742481 3:158652096 AC080013.1--GFM1 BS_N6NE6B3W ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr3:0.04Mb],LOCAL_REARRANGEMENT:+:[39688]],duplication AC080013.1 NA GFM1 NA NA NA NA NA NA +3:158742144 3:158645629 AC080013.1--GFM1 BS_N6NE6B3W ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr3:0.04Mb],LOCAL_REARRANGEMENT:+:[39688]],duplication AC080013.1 NA GFM1 NA NA NA NA NA NA +3:158742144 3:158649041 AC080013.1--GFM1 BS_N6NE6B3W ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr3:0.04Mb],LOCAL_REARRANGEMENT:+:[39688]],duplication AC080013.1 NA GFM1 NA NA NA NA NA NA +4:173477931 4:173384651 AC093849.1(7890)/HAND2(47038)--SCRG1 BS_N6NE6B3W ARRIBA other 2 0 low [],duplication AC093849.1 HAND2 SCRG1 NA NA NA TranscriptionFactor NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_N6NE6B3W ARRIBA other 16 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +11:108148858 11:108133820 ACAT1(1082)/NPAT(8357)--ACAT1 BS_N6NE6B3W ARRIBA other 1 1 low [],duplication ACAT1 NPAT ACAT1 NA NA NA NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_N6NE6B3W ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +14:34916589 14:34926527 AL121603.2(40130)/SRP54-AS1(4269)--SRP54-AS1 BS_N6NE6B3W ARRIBA other 1 0 low [],duplication AL121603.2 SRP54-AS1 SRP54-AS1 NA NA NA NA NA NA +6:118813102 6:118856545 AL359634.1(29682)/MCM9(340)--MCM9 BS_N6NE6B3W ARRIBA other 3 0 high [],duplication AL359634.1 MCM9 MCM9 NA NA TumorSuppressorGene TumorSuppressorGene NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_N6NE6B3W ARRIBA other 4 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +10:47542167 10:46940623 AL591684.2--PTPN20 BS_N6NE6B3W ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr10:0.52Mb]],inversion AL591684.2 NA PTPN20 NA NA NA NA NA NA +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_N6NE6B3W ARRIBA frameshift 1 3 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +11:13384499 11:13421838 ARNTL--BTBD10 BS_N6NE6B3W ARRIBA other 2 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_INVERSION:+:-:[735]],duplication/3'-3' ARNTL NA BTBD10 NA TumorSuppressorGene, TranscriptionFactor NA NA NA TCGAFusion +11:13310059 11:13445181 ARNTL--BTBD10 BS_N6NE6B3W ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_INVERSION:+:-:[735]],inversion ARNTL NA BTBD10 NA TumorSuppressorGene, TranscriptionFactor NA NA NA TCGAFusion +1:62866598 1:62816575 ATG4C(1085)/AC099794.1(29411)--ATG4C BS_N6NE6B3W ARRIBA other 1 0 low [],duplication ATG4C AC099794.1 ATG4C NA NA NA NA NA NA +13:25589699 13:25537988 ATP8A2--ATP8A2 BS_N6NE6B3W ARRIBA in-frame 34 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +7:33642918 7:33533954 BBS9(36850)/AC008080.1(83063)--BBS9 BS_N6NE6B3W ARRIBA other 1 0 low [],duplication BBS9 AC008080.1 BBS9 NA NA NA NA NA NA +10:47542167 10:46940623 BMS1P2--PTPN20 BS_N6NE6B3W ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr10:0.54Mb]],inversion BMS1P2 NA PTPN20 NA NA NA NA NA NA +11:47615963 11:47622776 C1QTNF4(21304)/MTCH2(1352)--MTCH2 BS_N6NE6B3W ARRIBA other 1 0 low [],duplication C1QTNF4 MTCH2 MTCH2 NA NA NA NA NA NA +12:120680495 12:120659878 CABP1(13171)/MLEC(6374)--CABP1 BS_N6NE6B3W ARRIBA other 5 0 high [],duplication CABP1 MLEC CABP1 NA NA NA NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_N6NE6B3W ARRIBA in-frame 77 0 high [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +9:137917431 9:137913180 CACNA1B--CACNA1B BS_N6NE6B3W ARRIBA frameshift 19 3 low [SELFIE,INTRACHROMOSOMAL[chr9:0.25Mb]],duplication/non-canonical_splicing CACNA1B NA CACNA1B NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_N6NE6B3W ARRIBA frameshift 25 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:2984382 9:3053412 CARM1P1--CARM1P1 BS_N6NE6B3W ARRIBA other 12 0 medium [SELFIE,INTRACHROMOSOMAL[chr9:0.15Mb]],duplication CARM1P1 NA CARM1P1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_N6NE6B3W ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_N6NE6B3W ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_N6NE6B3W ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_N6NE6B3W ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_N6NE6B3W ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_N6NE6B3W ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_N6NE6B3W ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_N6NE6B3W ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +10:12998338 10:13007105 CCDC3--CCDC3 BS_N6NE6B3W ARRIBA frameshift 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication CCDC3 NA CCDC3 NA NA NA NA NA NA +5:24535112 5:24537674 CDH10--CDH10 BS_N6NE6B3W ARRIBA frameshift 21 2 low [SELFIE,INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +5:19721347 5:19839242 CDH18--CDH18 BS_N6NE6B3W ARRIBA frameshift 45 4 low [SELFIE,INTRACHROMOSOMAL[chr5:1.10Mb]],duplication/non-canonical_splicing CDH18 NA CDH18 NA NA NA NA NA NA +18:65862917 18:65809704 CDH7--CDH7 BS_N6NE6B3W ARRIBA frameshift 7 3 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA +16:11189445 16:11020193 CLEC16A(7256)/AC007220.1(6732)--CLEC16A BS_N6NE6B3W ARRIBA other 4 0 medium [],duplication CLEC16A AC007220.1 CLEC16A NA NA NA NA NA NA +2:124798320 2:124772799 CNTNAP5--CNTNAP5 BS_N6NE6B3W ARRIBA in-frame 19 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.89Mb]],duplication/non-canonical_splicing CNTNAP5 NA CNTNAP5 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_N6NE6B3W ARRIBA other 177 14 high [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +8:3214497 8:3219442 CSMD1--CSMD1 BS_N6NE6B3W ARRIBA frameshift 17 1 low [SELFIE,INTRACHROMOSOMAL[chr8:2.06Mb]],duplication/non-canonical_splicing CSMD1 NA CSMD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +1:33788600 1:33810864 CSMD2--CSMD2 BS_N6NE6B3W ARRIBA in-frame 4 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr1:0.65Mb]],duplication/non-canonical_splicing CSMD2 NA CSMD2 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_N6NE6B3W ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_N6NE6B3W ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_N6NE6B3W ARRIBA in-frame 17 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_N6NE6B3W ARRIBA frameshift 25 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_N6NE6B3W ARRIBA in-frame 62 7 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +10:14604240 10:14622174 FAM107B--FAM107B BS_N6NE6B3W ARRIBA other 29 2 high [SELFIE,INTRACHROMOSOMAL[chr10:0.26Mb]],duplication FAM107B NA FAM107B NA NA NA NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_N6NE6B3W ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +15:30914091 15:30899483 FAN1--AC087481.2 BS_N6NE6B3W ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_REARRANGEMENT:+:[3525]],duplication FAN1 NA AC087481.2 NA NA NA NA NA NA +14:65751068 14:65721775 FUT8(6947)/AL391261.1(128524)--FUT8 BS_N6NE6B3W ARRIBA other 28 1 high [],duplication FUT8 AL391261.1 FUT8 NA Oncogene Oncogene NA NA NA +6:111694375 6:111720062 FYN--FYN BS_N6NE6B3W ARRIBA frameshift 24 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.21Mb]],duplication/non-canonical_splicing FYN NA FYN NA Kinase, Oncogene, Kinase Kinase, Oncogene, Kinase NA NA NA +12:132247910 12:132262625 GALNT9--GALNT9 BS_N6NE6B3W ARRIBA frameshift 20 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing GALNT9 NA GALNT9 NA NA NA NA NA NA +9:76516713 9:76500916 GCNT1(9297)/AL161626.1(32569)--GCNT1 BS_N6NE6B3W ARRIBA other 1 2 low [],duplication GCNT1 AL161626.1 GCNT1 NA NA NA NA NA NA +14:59456438 14:59551436 GPR135--CCDC175 BS_N6NE6B3W ARRIBA other 9 0 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59551436 GPR135--CCDC175 BS_N6NE6B3W ARRIBA other 4 0 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59565275 GPR135--CCDC175 BS_N6NE6B3W ARRIBA other 2 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59455684 14:59543454 GPR135--CCDC175 BS_N6NE6B3W ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59540746 GPR135--CCDC175 BS_N6NE6B3W ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59511803 GPR135--CCDC175 BS_N6NE6B3W ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_N6NE6B3W ARRIBA frameshift 94 5 high [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +21:29642825 21:29694062 GRIK1--GRIK1 BS_N6NE6B3W ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.40Mb]],duplication/non-canonical_splicing GRIK1 NA GRIK1 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_N6NE6B3W ARRIBA frameshift 184 22 high [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_N6NE6B3W ARRIBA frameshift 252 17 high [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_N6NE6B3W ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +15:20383291 15:20505493 HERC2P3--HERC2P3 BS_N6NE6B3W ARRIBA other 2 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing HERC2P3 NA HERC2P3 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_N6NE6B3W ARRIBA other 7 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +17:46170855 17:46247426 KANSL1--MAPK8IP1P1(2382)/AC005829.2(12125) BS_N6NE6B3W ARRIBA frameshift 1 0 low [],inversion KANSL1 NA MAPK8IP1P1 AC005829.2 NA NA NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_N6NE6B3W ARRIBA frameshift 13 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_N6NE6B3W ARRIBA in-frame 20 2 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_N6NE6B3W ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_N6NE6B3W ARRIBA other 27 5 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_N6NE6B3W ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +8:13032847 8:13031114 KIAA1456(1344)/RNU6-842P(11503)--KIAA1456 BS_N6NE6B3W ARRIBA other 25 3 medium [],duplication KIAA1456 RNU6-842P KIAA1456 NA NA NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_N6NE6B3W ARRIBA frameshift 9 1 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_N6NE6B3W ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +2:23731379 2:23783028 KLHL29(22768)/ATAD2B(17285)--ATAD2B BS_N6NE6B3W ARRIBA other 1 2 high [],duplication KLHL29 ATAD2B ATAD2B NA NA NA NA NA NA +14:59475869 14:59565275 L3HYPDH--CCDC175 BS_N6NE6B3W ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59551436 L3HYPDH--CCDC175 BS_N6NE6B3W ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59540746 L3HYPDH--CCDC175 BS_N6NE6B3W ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59538840 L3HYPDH--CCDC175 BS_N6NE6B3W ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +2:8382200 2:8392085 LINC00299--LINC00299(8464)/AC011747.2(151507) BS_N6NE6B3W ARRIBA other 2 0 low [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA +18:42454989 18:42453932 LINC00907--LINC00907 BS_N6NE6B3W ARRIBA other 14 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.53Mb]],duplication/non-canonical_splicing LINC00907 NA LINC00907 NA NA NA NA NA NA +7:30391035 7:30350761 LINC01176--ZNRF2 BS_N6NE6B3W ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_REARRANGEMENT:+:[23193]],duplication LINC01176 NA ZNRF2 NA NA NA NA NA NA +7:30391035 7:30366035 LINC01176--ZNRF2 BS_N6NE6B3W ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_REARRANGEMENT:+:[23193]],duplication LINC01176 NA ZNRF2 NA NA NA NA NA NA +5:6337150 5:6369749 LINC02145--LINC02145(29865)/MED10(2132) BS_N6NE6B3W ARRIBA other 1 2 high [],duplication LINC02145 NA LINC02145 MED10 NA NA NA NA NA +11:104544699 11:104545149 LINC02552--LINC02552 BS_N6NE6B3W ARRIBA other 30 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.16Mb]],duplication/non-canonical_splicing LINC02552 NA LINC02552 NA NA NA NA NA NA +8:10480192 8:10434886 LINCR-0001--AC104964.2 BS_N6NE6B3W ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:+:[36253]],duplication LINCR-0001 NA AC104964.2 NA NA NA NA NA NA +8:10480192 8:10446339 LINCR-0001--AC104964.2(8027)/LINCR-0001(28226) BS_N6NE6B3W ARRIBA other 10 1 high [],duplication LINCR-0001 NA AC104964.2 LINCR-0001 NA NA NA NA NA +X:20042502 X:20052988 MAP7D2--MAP7D2 BS_N6NE6B3W ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.11Mb]],duplication/non-canonical_splicing MAP7D2 NA MAP7D2 NA NA NA NA NA NA +17:46248159 17:46152966 MAPK8IP1P1(3115)/AC005829.2(11392)--KANSL1 BS_N6NE6B3W ARRIBA other 1 0 low [],inversion MAPK8IP1P1 AC005829.2 KANSL1 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_N6NE6B3W ARRIBA frameshift 30 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +6:118813102 6:118856545 MCM9--MCM9 BS_N6NE6B3W ARRIBA in-frame 2 2 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +14:46920012 14:47035304 MDGA2--MDGA2 BS_N6NE6B3W ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +13:48090352 13:48108550 MED4--MED4(13419)/POLR2KP2(25808) BS_N6NE6B3W ARRIBA frameshift 3 0 low [],duplication MED4 NA MED4 POLR2KP2 NA NA NA NA NA +14:100955949 14:100913432 MEG8--MEG8 BS_N6NE6B3W ARRIBA other 11 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_N6NE6B3W ARRIBA other 18 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +8:17341363 8:17373240 MTMR7--MTMR7 BS_N6NE6B3W ARRIBA in-frame 10 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA +8:124555742 8:124558832 MTSS1--MTSS1 BS_N6NE6B3W ARRIBA frameshift 44 13 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +11:17379665 11:17356651 NCR3LG1(2324)/AC124798.1(984)--NCR3LG1 BS_N6NE6B3W ARRIBA other 4 0 medium [],duplication NCR3LG1 AC124798.1 NCR3LG1 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_N6NE6B3W ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_N6NE6B3W ARRIBA other 16 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +15:76009200 15:76052983 NRG4--NRG4 BS_N6NE6B3W ARRIBA frameshift 34 4 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +1:224268034 1:224303857 NVL--NVL BS_N6NE6B3W ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.10Mb]],duplication/non-canonical_splicing NVL NA NVL NA NA NA NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_N6NE6B3W ARRIBA other 59 6 high [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +7:77951712 7:77920279 PHTF2--PHTF2 BS_N6NE6B3W ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_N6NE6B3W ARRIBA in-frame 17 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +9:109404448 9:109438234 PTPN3--PTPN3 BS_N6NE6B3W ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.12Mb]],duplication/non-canonical_splicing PTPN3 NA PTPN3 NA NA NA NA NA NA +12:15504069 12:15483974 PTPRO--PTPRO BS_N6NE6B3W ARRIBA frameshift 14 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRO NA PTPRO NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_N6NE6B3W ARRIBA frameshift 34 5 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +13:80657039 13:80361601 PWWP2AP1--SPRY2(20650)/RNU6-61P(7825) BS_N6NE6B3W ARRIBA other 7 0 medium [],duplication PWWP2AP1 NA SPRY2 RNU6-61P NA TumorSuppressorGene NA NA NA +12:106689364 12:106686884 RFX4--RFX4 BS_N6NE6B3W ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +18:46439195 18:46433190 RNF165--RNF165 BS_N6NE6B3W ARRIBA frameshift 6 1 medium [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication RNF165 NA RNF165 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_N6NE6B3W ARRIBA other 60 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:12149961 10:12081472 SEC61A2--DHTKD1 BS_N6NE6B3W ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:0.01Mb],LOCAL_REARRANGEMENT:+:[6412]],duplication SEC61A2 NA DHTKD1 NA NA NA NA NA NA +10:12162289 10:12118749 SEC61A2--DHTKD1 BS_N6NE6B3W ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr10:0.01Mb],LOCAL_REARRANGEMENT:+:[6412]],duplication SEC61A2 NA DHTKD1 NA NA NA NA NA NA +10:12133308 10:12112900 SEC61A2--DHTKD1 BS_N6NE6B3W ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr10:0.01Mb],LOCAL_REARRANGEMENT:+:[6412]],duplication SEC61A2 NA DHTKD1 NA NA NA NA NA NA +8:50502880 8:50438543 SNTG1--SNTG1 BS_N6NE6B3W ARRIBA frameshift 19 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +1:144905091 1:144955601 SRGAP2B--SRGAP2B BS_N6NE6B3W ARRIBA frameshift 26 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SRGAP2B NA SRGAP2B NA NA NA NA NA NA +8:52142930 8:52166986 ST18--ST18 BS_N6NE6B3W ARRIBA frameshift 38 6 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +20:59881078 20:59851568 SYCP2--PHACTR3(3857)/RNU7-141P(1099) BS_N6NE6B3W ARRIBA other 6 0 medium [],duplication SYCP2 NA PHACTR3 RNU7-141P NA NA NA NA NA +18:26267623 18:26265170 TAF4B--TAF4B BS_N6NE6B3W ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.17Mb]],duplication/non-canonical_splicing TAF4B NA TAF4B NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_N6NE6B3W ARRIBA other 45 3 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +15:76137895 15:76112018 TMEM266--TMEM266 BS_N6NE6B3W ARRIBA frameshift 21 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.17Mb]],duplication/non-canonical_splicing TMEM266 NA TMEM266 NA NA NA NA NA NA +X:111834921 X:111854106 TRPC5--TRPC5 BS_N6NE6B3W ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.31Mb]],duplication/non-canonical_splicing TRPC5 NA TRPC5 NA NA NA NA NA NA +9:70681506 9:70784279 TRPM3--TRPM3 BS_N6NE6B3W ARRIBA in-frame 23 2 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA +4:114693144 4:114619423 UGT8(14920)/CIR1P2(20435)--UGT8 BS_N6NE6B3W ARRIBA other 3 0 medium [],duplication UGT8 CIR1P2 UGT8 NA NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_N6NE6B3W ARRIBA in-frame 26 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +19:30018656 19:29985223 URI1(2048)/AC008507.2(10085)--URI1 BS_N6NE6B3W ARRIBA other 2 0 low [],duplication URI1 AC008507.2 URI1 NA NA NA NA NA NA +12:122920188 12:122935431 VPS37B(23744)/ABCB9(763)--ABCB9 BS_N6NE6B3W ARRIBA other 1 1 low [],duplication VPS37B ABCB9 ABCB9 NA NA NA NA NA NA +3:167653261 3:167664448 WDR49--WDR49(10465)/PDCD10(18850) BS_N6NE6B3W ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +19:51949235 19:51948593 ZNF350-AS1--ZNF613 BS_N6NE6B3W STARFUSION other 22 4 NA [INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:+:[375]] ZNF350-AS1 NA ZNF613 NA NA TranscriptionFactor NA NA NA +6:28234131 6:28227012 ZSCAN9(649)/ZKSCAN4(10492)--ZSCAN9 BS_N6NE6B3W ARRIBA other 5 1 high [],duplication ZSCAN9 ZKSCAN4 ZSCAN9 NA TranscriptionFactor TranscriptionFactor TranscriptionFactor NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_N8J1DP02 ARRIBA other 21 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_N8J1DP02 ARRIBA other 21 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:125403664 7:125347125 AC010099.4(24343)/AC073486.1(27683)--AC010099.4 BS_N8J1DP02 ARRIBA other 3 0 medium [],duplication AC010099.4 AC073486.1 AC010099.4 NA NA NA NA NA NA +7:125431593 7:125347125 AC073486.1--AC010099.4 BS_N8J1DP02 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:0.05Mb],LOCAL_REARRANGEMENT:+:[52026]],duplication AC073486.1 NA AC010099.4 NA NA NA NA NA NA +7:125438297 7:125194948 AC073486.1--AC010099.4 BS_N8J1DP02 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.05Mb],LOCAL_REARRANGEMENT:+:[52026]],duplication AC073486.1 NA AC010099.4 NA NA NA NA NA NA +7:125438297 7:125329682 AC073486.1--AC010099.4 BS_N8J1DP02 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.05Mb],LOCAL_REARRANGEMENT:+:[52026]],duplication AC073486.1 NA AC010099.4 NA NA NA NA NA NA +7:125438297 7:125401344 AC073486.1--AC010099.4(22023)/AC073486.1(30003) BS_N8J1DP02 ARRIBA other 7 0 high [],duplication AC073486.1 NA AC010099.4 AC073486.1 NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_N8J1DP02 ARRIBA other 2 1 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_N8J1DP02 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46481050 20:46504740 AL031686.1--ZNF334 BS_N8J1DP02 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46496711 20:46509751 AL031686.1--ZNF334 BS_N8J1DP02 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_N8J1DP02 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_N8J1DP02 ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +8:61376779 8:61299677 CLVS1--CLVS1 BS_N8J1DP02 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.44Mb]],duplication/non-canonical_splicing CLVS1 NA CLVS1 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_N8J1DP02 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +20:54610523 20:54554933 DOK5--DOK5 BS_N8J1DP02 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA +9:14746353 9:14770806 FREM1--FREM1 BS_N8J1DP02 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.18Mb]],duplication/non-canonical_splicing FREM1 NA FREM1 NA NA NA NA NA NA +1:173160178 1:173207185 GOT2P2(17828)/AL022310.1(14122)--TNFSF4 BS_N8J1DP02 ARRIBA other 3 0 medium [],duplication GOT2P2 AL022310.1 TNFSF4 NA NA NA NA NA NA +21:29642825 21:29694062 GRIK1--GRIK1 BS_N8J1DP02 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr21:0.40Mb]],duplication/non-canonical_splicing GRIK1 NA GRIK1 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_N8J1DP02 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_N8J1DP02 ARRIBA other 14 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +8:89418044 8:89725641 KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_N8J1DP02 ARRIBA other 3 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +2:8201947 2:8245140 LINC00298--LINC00299 BS_N8J1DP02 ARRIBA other 9 2 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00298 NA LINC00299 NA NA NA NA NA NA +2:8201947 2:8245140 LINC00299--LINC00299 BS_N8J1DP02 ARRIBA other 12 2 high [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_N8J1DP02 ARRIBA in-frame 12 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +10:26193311 10:26173663 MYO3A--MYO3A BS_N8J1DP02 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.28Mb]],duplication/non-canonical_splicing MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_N8J1DP02 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96920125 12:96792329 NEDD1--CFAP54 BS_N8J1DP02 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_N8J1DP02 ARRIBA in-frame 24 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_N8J1DP02 ARRIBA other 7 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_N8J1DP02 ARRIBA other 21 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_N8J1DP02 ARRIBA other 7 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +1:173346518 1:173442097 TNFSF4(139205)/AL645568.3(5171)--AL645568.1 BS_N8J1DP02 ARRIBA other 2 1 medium [],duplication TNFSF4 AL645568.3 AL645568.1 NA NA NA NA NA NA +6:42830172 6:42952121 BICRAL--AL035587.1(3761)/RPL24P4(4224) BS_NB42PWZN ARRIBA frameshift 4 1 high [],inversion BICRAL NA AL035587.1 RPL24P4 NA NA NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_NB42PWZN ARRIBA in-frame 282 16 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662088 C11orf95--RELA BS_NB42PWZN ARRIBA in-frame 2 10 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_NB42PWZN STARFUSION in-frame 298 21 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:47765270 11:62356987 FNBP4--ASRGL1 BS_NB42PWZN ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA +11:47765270 11:62356325 FNBP4--ASRGL1 BS_NB42PWZN ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA +11:47765270 11:62337967 FNBP4--ASRGL1 BS_NB42PWZN ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA +2:202811746 2:203135677 ICA1L--NBEAL1 BS_NB42PWZN ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr2:0.14Mb]],inversion ICA1L NA NBEAL1 NA NA NA NA NA NA +2:202819701 2:203135677 ICA1L--NBEAL1 BS_NB42PWZN ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr2:0.14Mb]],inversion ICA1L NA NBEAL1 NA NA NA NA NA NA +2:203183388 2:202819899 NBEAL1--ICA1L BS_NB42PWZN ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.14Mb]],inversion NBEAL1 NA ICA1L NA NA NA NA NA NA +22:36028240 11:132943010 RBFOX2--OPCML BS_NB42PWZN ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr22--chr11]],translocation RBFOX2 NA OPCML NA NA TumorSuppressorGene, Oncogene NA NA NA +12:23604387 12:12554659 SOX5--DUSP16 BS_NB42PWZN ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr12:10.97Mb]],deletion SOX5 NA DUSP16 NA Oncogene, TranscriptionFactor NA NA NA NA +14:77557041 4:185143851 SPTLC2--SLC25A4 BS_NB42PWZN ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr14--chr4]],translocation/5'-5' SPTLC2 NA SLC25A4 NA NA NA NA NA NA +6:52995856 14:49862653 7SK--RN7SL2 BS_NB5XWMJT STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995908 14:49862722 7SK--RN7SL2 BS_NB5XWMJT STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NB5XWMJT ARRIBA other 87 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NB5XWMJT ARRIBA other 87 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_NB5XWMJT ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +9:119208719 9:119214155 BRINP1--BRINP1 BS_NB5XWMJT ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_NB5XWMJT ARRIBA other 8 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_NB5XWMJT ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +10:95876518 10:95921597 ENTPD1-AS1--ENTPD1-AS1 BS_NB5XWMJT ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.34Mb]],duplication/non-canonical_splicing ENTPD1-AS1 NA ENTPD1-AS1 NA NA NA NA NA NA +3:178859489 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_NB5XWMJT ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_NB5XWMJT ARRIBA in-frame 10 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +12:106654351 12:106608797 RFX4--RFX4 BS_NB5XWMJT ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +14:49862556 6:52995635 RN7SL2--7SK BS_NB5XWMJT STARFUSION other 6 9 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NB5XWMJT ARRIBA other 87 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:66690316 1:66677004 SGIP1--SGIP1 BS_NB5XWMJT ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SGIP1 NA SGIP1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NDC69214 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NDC69214 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:65838569 12:124378384 HMGA2--NCOR2 BS_NDFDQBCZ ARRIBA in-frame 10 0 high [INTRACHROMOSOMAL[chr12:58.36Mb]],inversion HMGA2 NA NCOR2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA +1:211391976 1:211365376 LINC00467--TRAF5 BS_NDFDQBCZ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.01Mb],LOCAL_REARRANGEMENT:+:[7857]],duplication LINC00467 NA TRAF5 NA NA NA NA NA NA +12:124385745 12:65951383 NCOR2--HMGA2 BS_NDFDQBCZ ARRIBA in-frame 9 0 high [INTRACHROMOSOMAL[chr12:58.36Mb]],inversion NCOR2 NA HMGA2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +12:22354179 12:22392396 ST8SIA1--ST8SIA1 BS_NDFDQBCZ ARRIBA other 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.37Mb]],duplication ST8SIA1 NA ST8SIA1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NDN62H0S ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NDN62H0S ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +12:34522142 4:9052052 AK6P1(272184)/ZNF970P(3053445)--SNRPCP16 BS_NDN62H0S ARRIBA other 4 0 medium [],translocation AK6P1 ZNF970P SNRPCP16 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_NDN62H0S ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_NDN62H0S ARRIBA other 2 0 low [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +13:25589699 13:25570767 ATP8A2--ATP8A2 BS_NDN62H0S ARRIBA in-frame 39 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_NDN62H0S ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +11:43798427 11:43640952 HSD17B12--AC068205.1 BS_NDN62H0S ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:+:[7165]],duplication HSD17B12 NA AC068205.1 NA NA NA NA NA NA +11:43754121 11:43672991 HSD17B12--AC068205.1 BS_NDN62H0S ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:+:[7165]],duplication HSD17B12 NA AC068205.1 NA NA NA NA NA NA +1:196373140 1:196479238 KCNT2--KCNT2 BS_NDN62H0S ARRIBA frameshift 18 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA +9:62806330 9:62818561 LINC01410--LINC01410(5075)/AL512625.2(19187) BS_NDN62H0S ARRIBA other 2 2 medium [],inversion LINC01410 NA LINC01410 AL512625.2 NA NA NA NA NA +X:150471490 X:150462772 MAMLD1--MAMLD1 BS_NDN62H0S ARRIBA in-frame 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA +2:1839149 2:1892287 MYT1L--MYT1L BS_NDN62H0S ARRIBA frameshift 25 4 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +8:32029485 8:31898762 NRG1-IT1--NRG1 BS_NDN62H0S ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr8:0.11Mb]],duplication NRG1-IT1 NA NRG1 NA NA CosmicCensus NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_NDN62H0S ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_NDN62H0S ARRIBA frameshift 3 2 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +7:157595238 7:157682937 PTPRN2--PTPRN2 BS_NDN62H0S ARRIBA in-frame 34 5 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:1.05Mb]],duplication/non-canonical_splicing PTPRN2 NA PTPRN2 NA NA NA NA NA NA +9:35657771 14:49586590 RMRP--AL139099.5 BS_NDN62H0S STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL139099.5 NA Oncogene NA NA NA NA +9:35657881 14:49586590 RMRP--AL139099.5 BS_NDN62H0S STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL139099.5 NA Oncogene NA NA NA NA +9:35657837 14:49586591 RMRP--AL139099.5 BS_NDN62H0S STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL139099.5 NA Oncogene NA NA NA NA +9:35657774 14:49586588 RMRP--RN7SL1 BS_NDN62H0S STARFUSION other 5 13 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL1 NA Oncogene NA NA NA NA +9:35657881 14:49586590 RMRP--RN7SL1 BS_NDN62H0S STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL1 NA Oncogene NA NA NA NA +9:35657837 14:49586591 RMRP--RN7SL1 BS_NDN62H0S STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL1 NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NDN62H0S ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16238771 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_NDN62H0S ARRIBA other 1 1 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +X:102911035 X:102839801 Z68871.1(4877)/RAB40AL(26237)--LINC00630 BS_NDN62H0S ARRIBA other 2 0 medium [],duplication Z68871.1 RAB40AL LINC00630 NA NA NA NA NA NA +12:32306122 12:32305697 BICD1--BICD1 BS_NDRDM2A9 ARRIBA in-frame 9 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing BICD1 NA BICD1 NA NA NA NA NA NA +X:44961392 X:44956425 KDM6A--KDM6A BS_NDRDM2A9 ARRIBA frameshift 4 0 medium [SELFIE,INTRACHROMOSOMAL[chrX:0.24Mb]],duplication KDM6A NA KDM6A NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +14:49862573 6:52995789 RN7SL2--7SK BS_NDRDM2A9 STARFUSION other 4 8 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862561 6:52995745 RN7SL2--7SK BS_NDRDM2A9 STARFUSION other 3 8 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862574 6:52995641 RN7SL2--7SK BS_NDRDM2A9 STARFUSION other 3 8 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +9:70681506 9:70784279 TRPM3--TRPM3 BS_NDRDM2A9 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.92Mb]],duplication/non-canonical_splicing TRPM3 NA TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NFRXNAFE ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NFRXNAFE ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_NFRXNAFE ARRIBA in-frame 22 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_NFRXNAFE ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_NFRXNAFE ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +16:76635623 16:76535545 LINC02125--CNTNAP4 BS_NFRXNAFE ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr16:0.08Mb],LOCAL_REARRANGEMENT:+:[75760]],duplication LINC02125 NA CNTNAP4 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_NFRXNAFE ARRIBA other 2 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NFRXNAFE ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +X:12065575 X:12498680 Y_RNA(10649)/FRMPD4(72891)--FRMPD4 BS_NFRXNAFE ARRIBA other 3 0 high [],deletion Y_RNA FRMPD4 FRMPD4 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_NGHK9RZP ARRIBA other 7 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +3:167140689 3:167282495 AC092965.1(74369)/ZBBX(99598)--ZBBX BS_NGHK9RZP ARRIBA other 2 1 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +6:167907289 6:167896878 AFDN--AFDN BS_NGHK9RZP ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.15Mb]],duplication/non-canonical_splicing AFDN NA AFDN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_NGHK9RZP ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46496711 20:46504740 AL031686.1--ZNF334 BS_NGHK9RZP ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46485529 20:46504740 AL031686.1--ZNF334 BS_NGHK9RZP ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46492682 20:46506458 AL031686.1--ZNF334 BS_NGHK9RZP ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +14:49586856 14:20343384 AL139099.5--AL355075.4 BS_NGHK9RZP STARFUSION other 3 6 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586856 11:2129921 AL139099.5--IGF2 BS_NGHK9RZP STARFUSION other 3 6 NA [INTERCHROMOSOMAL[chr14--chr11]] AL139099.5 NA IGF2 NA NA Oncogene NA NA NA +14:49586856 14:20343381 AL139099.5--RPPH1 BS_NGHK9RZP STARFUSION other 3 6 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +X:129982762 X:18203915 BCORL1--BEND2 BS_NGHK9RZP ARRIBA other 5 1 high [INTRACHROMOSOMAL[chrX:111.76Mb]],inversion BCORL1 NA BEND2 NA TumorSuppressorGene, CosmicCensus NA NA NA NA +X:129982762 X:18212680 BCORL1--BEND2 BS_NGHK9RZP ARRIBA other 4 1 high [INTRACHROMOSOMAL[chrX:111.76Mb]],inversion BCORL1 NA BEND2 NA TumorSuppressorGene, CosmicCensus NA NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_NGHK9RZP ARRIBA in-frame 290 80 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_NGHK9RZP ARRIBA in-frame 7 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_NGHK9RZP ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_NGHK9RZP STARFUSION in-frame 301 100 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +20:3753959 16:22142668 C20orf27--VWA3A BS_NGHK9RZP ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr20--chr16]],translocation C20orf27 NA VWA3A NA NA NA NA NA NA +12:75282251 12:75316434 CAPS2--CAPS2 BS_NGHK9RZP ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.11Mb]],duplication/non-canonical_splicing CAPS2 NA CAPS2 NA NA NA NA NA NA +10:104168744 10:104188410 CFAP43--CFAP43 BS_NGHK9RZP ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.10Mb]],duplication/non-canonical_splicing CFAP43 NA CFAP43 NA NA NA NA NA NA +15:92974950 15:92955423 CHD2--CHD2 BS_NGHK9RZP ARRIBA in-frame 25 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +13:39689824 13:39687503 COG6--COG6 BS_NGHK9RZP ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.14Mb]],duplication/non-canonical_splicing COG6 NA COG6 NA NA NA NA NA NA +X:108584525 X:108571413 COL4A5--COL4A5 BS_NGHK9RZP ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.26Mb]],duplication/non-canonical_splicing COL4A5 NA COL4A5 NA NA NA NA NA NA +14:39348977 14:39308449 CTAGE5--CTAGE5 BS_NGHK9RZP ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.16Mb]],duplication/non-canonical_splicing CTAGE5 NA CTAGE5 NA NA NA NA NA NA +15:44486700 X:7774245 CTDSPL2--AC120338.1(283046)/VCX(68017) BS_NGHK9RZP ARRIBA frameshift 6 0 high [],translocation CTDSPL2 NA AC120338.1 VCX NA NA NA NA NA +9:19357154 9:19350702 DENND4C--DENND4C BS_NGHK9RZP ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing DENND4C NA DENND4C NA NA NA NA NA NA +15:51463379 15:51476719 DMXL2--DMXL2 BS_NGHK9RZP ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.18Mb]],duplication/non-canonical_splicing DMXL2 NA DMXL2 NA NA NA NA NA NA +12:123870485 12:123857056 DNAH10--DNAH10 BS_NGHK9RZP ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA +7:21582021 7:21570069 DNAH11--DNAH11 BS_NGHK9RZP ARRIBA in-frame 17 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.36Mb]],duplication/non-canonical_splicing DNAH11 NA DNAH11 NA NA NA NA NA NA +5:13751078 5:13770980 DNAH5--DNAH5 BS_NGHK9RZP ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.25Mb]],duplication/non-canonical_splicing DNAH5 NA DNAH5 NA NA NA NA NA NA +2:195897667 2:195907009 DNAH7--DNAH7 BS_NGHK9RZP ARRIBA in-frame 27 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA +17:11640384 17:11632587 DNAH9--DNAH9 BS_NGHK9RZP ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.37Mb]],duplication/non-canonical_splicing DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA +6:56497379 6:56501693 DST--DST BS_NGHK9RZP ARRIBA in-frame 4 5 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing DST NA DST NA Oncogene Oncogene NA NA NA +22:43554869 22:43590229 EFCAB6--EFCAB6 BS_NGHK9RZP ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr22:0.28Mb]],duplication/non-canonical_splicing EFCAB6 NA EFCAB6 NA NA NA NA NA NA +15:44535263 1:23572747 EIF3J-AS1--ID3(12953)/MDS2(8748) BS_NGHK9RZP ARRIBA other 2 0 medium [],translocation EIF3J-AS1 NA ID3 MDS2 NA CosmicCensus, Oncogene NA CosmicCensus, Oncogene NA +1:74589631 1:74606902 ERICH3--ERICH3 BS_NGHK9RZP ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing ERICH3 NA ERICH3 NA NA NA NA NA NA +9:14756374 9:14770806 FREM1--FREM1 BS_NGHK9RZP ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.18Mb]],duplication/non-canonical_splicing FREM1 NA FREM1 NA NA NA NA NA NA +3:180968254 3:180957819 FXR1--FXR1 BS_NGHK9RZP ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.11Mb]],duplication/non-canonical_splicing FXR1 NA FXR1 NA NA NA NA NA NA +18:6985237 18:6999997 LAMA1--LAMA1 BS_NGHK9RZP ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA +14:59999226 14:59959818 LRRC9--LRRC9 BS_NGHK9RZP ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +6:161084617 6:161073466 MAP3K4--MAP3K4 BS_NGHK9RZP ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.13Mb]],duplication/non-canonical_splicing MAP3K4 NA MAP3K4 NA Kinase, TumorSuppressorGene, Kinase Kinase, TumorSuppressorGene, Kinase NA NA NA +14:50440013 14:50466645 MAP4K5--MAP4K5 BS_NGHK9RZP ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing MAP4K5 NA MAP4K5 NA Kinase Kinase NA NA NA +5:67145379 5:67136563 MAST4--MAST4 BS_NGHK9RZP ARRIBA in-frame 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.57Mb]],duplication/non-canonical_splicing MAST4 NA MAST4 NA Kinase, Kinase Kinase, Kinase NA NA NA +1:29230731 X:36964365 MECR--BX842568.2(940)/BX842568.3(21158) BS_NGHK9RZP ARRIBA frameshift 2 0 medium [],translocation MECR NA BX842568.2 BX842568.3 NA NA NA NA NA +14:100942838 14:100913432 MEG8--MEG8 BS_NGHK9RZP ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA +15:71859735 15:71883736 MYO9A--MYO9A BS_NGHK9RZP ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.30Mb]],duplication/non-canonical_splicing MYO9A NA MYO9A NA NA NA NA NA NA +4:40144800 4:40142673 N4BP2--N4BP2 BS_NGHK9RZP ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.10Mb]],duplication/non-canonical_splicing N4BP2 NA N4BP2 NA CosmicCensus CosmicCensus NA NA NA +20:34740363 20:34746928 NCOA6--NCOA6 BS_NGHK9RZP ARRIBA frameshift 7 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr20:0.14Mb]],duplication/non-canonical_splicing NCOA6 NA NCOA6 NA Oncogene Oncogene NA NA NA +3:27115940 3:27141582 NEK10--NEK10 BS_NGHK9RZP ARRIBA frameshift 11 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr3:0.26Mb]],duplication/non-canonical_splicing NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA +1:24464120 X:5872477 NIPAL3--NLGN4X BS_NGHK9RZP ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr1--chrX]],translocation/5'-5' NIPAL3 NA NLGN4X NA NA NA NA NA NA +9:131164144 9:131144280 NUP214--NUP214 BS_NGHK9RZP ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing NUP214 NA NUP214 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +X:15455848 X:93679006 PIR--FAM133A BS_NGHK9RZP ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chrX:78.18Mb]],duplication/5'-5' PIR NA FAM133A NA NA NA NA NA NA +X:15455848 X:93797858 PIR--Z94722.1(20474)/RNU6-332P(205957) BS_NGHK9RZP ARRIBA frameshift 2 1 high [],duplication PIR NA Z94722.1 RNU6-332P NA NA NA NA NA +1:29236717 X:20473146 PTPRU--AL807740.1 BS_NGHK9RZP ARRIBA frameshift 14 2 high [INTERCHROMOSOMAL[chr1--chrX]],translocation PTPRU NA AL807740.1 NA Oncogene NA NA NA NA +1:29236717 X:20474102 PTPRU--AL807740.1 BS_NGHK9RZP ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr1--chrX]],translocation PTPRU NA AL807740.1 NA Oncogene NA NA NA NA +1:29236717 X:20383490 PTPRU--AL928596.1(65707)/AL807740.1(59836) BS_NGHK9RZP ARRIBA frameshift 2 1 high [],translocation PTPRU NA AL928596.1 AL807740.1 Oncogene NA NA NA NA +20:38532859 20:38521497 RALGAPB--RALGAPB BS_NGHK9RZP ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.11Mb]],duplication/non-canonical_splicing RALGAPB NA RALGAPB NA NA NA NA NA NA +5:131634962 4:158599424 RAPGEF6--RXFP1 BS_NGHK9RZP ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr5--chr4]],translocation/5'-5' RAPGEF6 NA RXFP1 NA NA NA NA NA NA +14:49586856 14:20343384 RN7SL1--AL355075.4 BS_NGHK9RZP STARFUSION other 3 6 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586856 11:2129921 RN7SL1--IGF2 BS_NGHK9RZP STARFUSION other 3 6 NA [INTERCHROMOSOMAL[chr14--chr11]] RN7SL1 NA IGF2 NA NA Oncogene NA NA NA +14:49586856 14:20343384 RN7SL1--RPPH1 BS_NGHK9RZP STARFUSION other 3 6 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +16:53664870 16:53692364 RPGRIP1L--RPGRIP1L BS_NGHK9RZP ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.11Mb]],duplication/non-canonical_splicing RPGRIP1L NA RPGRIP1L NA NA NA NA NA NA +6:145919348 6:145927277 SHPRH--SHPRH BS_NGHK9RZP ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing SHPRH NA SHPRH NA TumorSuppressorGene TumorSuppressorGene NA NA NA +17:72081921 17:72085045 SOX9-AS1--SOX9-AS1 BS_NGHK9RZP ARRIBA other 10 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing SOX9-AS1 NA SOX9-AS1 NA NA NA NA NA NA +1:118023304 1:118031867 SPAG17--SPAG17 BS_NGHK9RZP ARRIBA in-frame 16 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing SPAG17 NA SPAG17 NA NA NA NA NA NA +9:4600653 9:4622510 SPATA6L--SPATA6L BS_NGHK9RZP ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing SPATA6L NA SPATA6L NA NA NA NA NA NA +11:62831019 X:43277381 STX5--PINCR(50783)/IMPDH1P4(744) BS_NGHK9RZP ARRIBA frameshift 6 0 high [],translocation STX5 NA PINCR IMPDH1P4 NA NA NA NA NA +15:43475565 X:127077406 TP53BP1--PRR32(255620)/Z82209.1(312936) BS_NGHK9RZP ARRIBA frameshift 35 0 high [],translocation TP53BP1 NA PRR32 Z82209.1 TumorSuppressorGene NA NA NA NA +1:55145998 1:55148570 USP24--USP24 BS_NGHK9RZP ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing USP24 NA USP24 NA Oncogene Oncogene NA NA NA +16:22142300 20:3767754 VWA3A--C20orf27 BS_NGHK9RZP ARRIBA other 8 1 medium [INTERCHROMOSOMAL[chr16--chr20]],translocation VWA3A NA C20orf27 NA NA NA NA NA NA +16:22141692 20:3755607 VWA3A--C20orf27 BS_NGHK9RZP ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr16--chr20]],translocation VWA3A NA C20orf27 NA NA NA NA NA NA +4:176139974 4:176128738 WDR17--WDR17 BS_NGHK9RZP ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing WDR17 NA WDR17 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_NGHK9RZP ARRIBA frameshift 15 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NH7K4CD9 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NH7K4CD9 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:102920101 4:94996040 CNNM2--BMPR1B BS_NH7K4CD9 ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr10--chr4]],translocation CNNM2 NA BMPR1B NA NA Kinase, Kinase NA NA NA +3:119905755 4:135256041 GSK3B--LINC02485(132262)/U6(59377) BS_NH7K4CD9 ARRIBA frameshift 3 0 high [],translocation GSK3B NA LINC02485 U6 Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA NA +1:61359274 1:61805476 NFIA--PATJ BS_NH7K4CD9 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],inversion/3'-3' NFIA NA PATJ NA TranscriptionFactor Oncogene NA NA NA +1:61359274 1:61709437 NFIA--TM2D1 BS_NH7K4CD9 ARRIBA in-frame 6 0 high [INTRACHROMOSOMAL[chr1:0.22Mb]],inversion NFIA NA TM2D1 NA TranscriptionFactor NA NA NA NA +1:63774508 11:120016909 ROR1--AP001360.2(4751)/TRIM29(94366) BS_NH7K4CD9 ARRIBA frameshift 5 0 high [],translocation ROR1 NA AP001360.2 TRIM29 Kinase, Kinase NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NH7K4CD9 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:10755232 6:56792187 AL024498.2--DST BS_NJ4WPQVK ARRIBA other 2 0 low [],deletion/5'-5' AL024498.2 NA DST NA NA Oncogene NA NA NA +6:20291858 19:34431861 AL158198.1--UBA2 BS_NJ4WPQVK ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr6--chr19]],translocation/3'-3' AL158198.1 NA UBA2 NA NA NA NA NA NA +14:20343159 6:52995636 AL355075.4--7SK BS_NJ4WPQVK STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr14--chr1]] AL355075.4 NA 7SK NA NA NA NA NA NA +18:79096649 18:79660804 ATP9B--AC068473.1 BS_NJ4WPQVK ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr18:0.26Mb]],inversion ATP9B NA AC068473.1 NA NA NA NA NA NA +X:77785982 X:83872886 ATRX--CYLC1 BS_NJ4WPQVK ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chrX:6.07Mb]],inversion ATRX NA CYLC1 NA CosmicCensus, Oncogene NA NA NA NA +X:77785982 X:83871452 ATRX--CYLC1 BS_NJ4WPQVK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chrX:6.07Mb]],inversion ATRX NA CYLC1 NA CosmicCensus, Oncogene NA NA NA NA +2:240586260 13:114251336 CAPN10-AS1--CDC16 BS_NJ4WPQVK ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr2--chr13]],translocation/5'-5' CAPN10-AS1 NA CDC16 NA NA NA NA NA NA +6:25482343 6:16112310 CARMIL1--AL021407.2(3717)/MYLIP(16815) BS_NJ4WPQVK ARRIBA frameshift 2 0 medium [],inversion CARMIL1 NA AL021407.2 MYLIP NA NA NA NA NA +7:132838399 7:133817325 CHCHD3--EXOC4 BS_NJ4WPQVK ARRIBA in-frame 1 0 low [Klijn_CellLines,FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr7:0.17Mb]],inversion CHCHD3 NA EXOC4 NA TranscriptionFactor Oncogene NA NA NA +7:133024546 7:133817325 CHCHD3--EXOC4 BS_NJ4WPQVK ARRIBA in-frame 1 0 low [Klijn_CellLines,FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr7:0.17Mb]],inversion CHCHD3 NA EXOC4 NA TranscriptionFactor Oncogene NA NA NA +6:12292503 1:154321105 EDN1--AQP10 BS_NJ4WPQVK ARRIBA frameshift 7 0 medium [INTERCHROMOSOMAL[chr6--chr1]],translocation/5'-5' EDN1 NA AQP10 NA NA NA NA NA NA +1:147224895 1:146478306 FMO5--AC245407.2(16447)/AC245407.1(36165) BS_NJ4WPQVK ARRIBA frameshift 2 0 medium [],inversion FMO5 NA AC245407.2 AC245407.1 NA NA NA NA NA +X:74278898 X:82384845 FTX--RNU6-974P(383518)/AL031313.1(112824) BS_NJ4WPQVK ARRIBA other 3 0 medium [],duplication FTX NA RNU6-974P AL031313.1 NA NA NA NA NA +6:13486638 19:36161174 GFOD1--COX7A1(8305)/AC002984.1(12232) BS_NJ4WPQVK ARRIBA frameshift 5 0 high [],translocation GFOD1 NA COX7A1 AC002984.1 NA NA NA NA NA +1:39631497 5:181237041 HEYL--RACK1 BS_NJ4WPQVK ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr1--chr5]],translocation HEYL NA RACK1 NA TranscriptionFactor Oncogene NA NA NA +17:16079964 17:11929866 NCOR1--DNAH9 BS_NJ4WPQVK ARRIBA in-frame 11 1 high [INTRACHROMOSOMAL[chr17:4.06Mb]],inversion NCOR1 NA DNAH9 NA CosmicCensus, Oncogene Oncogene NA NA NA +1:162154476 1:150260151 NOS1AP--CA14 BS_NJ4WPQVK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:11.80Mb]],duplication NOS1AP NA CA14 NA NA NA NA NA NA +5:43547728 4:47161249 PAIP1--GABRB1 BS_NJ4WPQVK ARRIBA in-frame 14 0 high [INTERCHROMOSOMAL[chr5--chr4]],translocation PAIP1 NA GABRB1 NA NA NA NA NA NA +5:43547728 4:47161249 PAIP1--GABRB1 BS_NJ4WPQVK STARFUSION in-frame 14 0 NA [INTERCHROMOSOMAL[chr5--chr4]] PAIP1 NA GABRB1 NA NA NA NA NA NA +5:6714699 2:28173 PAPD7--FAM110C(10641) BS_NJ4WPQVK ARRIBA frameshift 7 0 high [],translocation PAPD7 NA FAM110C NA NA NA NA NA NA +12:68611043 12:103815121 RAP1B--NT5DC3 BS_NJ4WPQVK ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr12:35.10Mb]],inversion RAP1B NA NT5DC3 NA Oncogene NA NA NA NA +14:20343156 6:52995631 RPPH1--7SK BS_NJ4WPQVK STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr14--chr1]] RPPH1 NA 7SK NA NA NA NA NA NA +6:10755232 6:56792187 TMEM14B--DST BS_NJ4WPQVK ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr6:45.61Mb]],deletion/5'-5' TMEM14B NA DST NA NA Oncogene NA NA NA +17:7687377 6:3302858 TP53--PSMG4 BS_NJ4WPQVK ARRIBA other 4 0 high [INTERCHROMOSOMAL[chr17--chr6]],translocation TP53 NA PSMG4 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +17:7687377 6:3255051 TP53--PSMG4 BS_NJ4WPQVK ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr17--chr6]],translocation TP53 NA PSMG4 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +13:44573163 3:151278476 TSC22D1--P2RY14 BS_NJ4WPQVK ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr13--chr3]],translocation TSC22D1 NA P2RY14 NA TumorSuppressorGene, TranscriptionFactor Oncogene NA NA NA +19:34467014 6:20291975 UBA2--AL158198.1 BS_NJ4WPQVK ARRIBA frameshift 6 1 medium [INTERCHROMOSOMAL[chr19--chr6]],translocation/5'-5' UBA2 NA AL158198.1 NA NA NA NA NA NA +5:37727045 5:11412069 WDR70--CTNND2 BS_NJ4WPQVK ARRIBA in-frame 4 1 high [INTRACHROMOSOMAL[chr5:25.48Mb]],inversion WDR70 NA CTNND2 NA NA CosmicCensus, Oncogene NA NA NA +6:38116739 6:43681120 ZFAND3--MRPS18A BS_NJ4WPQVK ARRIBA in-frame 12 0 high [INTRACHROMOSOMAL[chr6:5.52Mb]],inversion ZFAND3 NA MRPS18A NA NA NA NA NA NA +6:57099141 6:36756298 ZNF451--CPNE5 BS_NJ4WPQVK ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr6:20.25Mb]],inversion ZNF451 NA CPNE5 NA TranscriptionFactor NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_NKEAAFMW ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_NKEAAFMW ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_NKEAAFMW ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_NKEAAFMW ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_NKEAAFMW ARRIBA other 3 0 medium [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_NKEAAFMW ARRIBA frameshift 3 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19709542 13:19835689 PSPC1--ZMYM5 BS_NKEAAFMW ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19751271 13:19835689 PSPC1--ZMYM5 BS_NKEAAFMW ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_NKEAAFMW ARRIBA other 3 0 medium [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +19:21767548 10:22600103 ZNF100--PIP4K2A BS_NKEAAFMW ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr19--chr10]],translocation/3'-3' ZNF100 NA PIP4K2A NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NKRYMHEP ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NKRYMHEP ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:10213491 5:10227647 AC034229.4(9451)/FAM173B(12839)--FAM173B BS_NKRYMHEP ARRIBA other 4 0 high [],duplication AC034229.4 FAM173B FAM173B NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_NKRYMHEP ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +10:4949861 10:4830675 AKR1C6P(57886)/U8(12575)--AKR1E2 BS_NKRYMHEP ARRIBA other 1 0 low [],duplication AKR1C6P U8 AKR1E2 NA NA NA NA NA NA +2:201330470 2:201362686 ALS2CR12--ALS2CR12(5288)/TRAK2(14521) BS_NKRYMHEP ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_NKRYMHEP ARRIBA frameshift 1 0 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_NKRYMHEP ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_NKRYMHEP ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_NKRYMHEP ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100561397 CAVIN4--TMEFF1 BS_NKRYMHEP ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_NKRYMHEP ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_NKRYMHEP ARRIBA frameshift 42 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_NKRYMHEP ARRIBA frameshift 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_NKRYMHEP ARRIBA other 5 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_NKRYMHEP ARRIBA frameshift 12 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +14:59475869 14:59565275 L3HYPDH--CCDC175 BS_NKRYMHEP ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59551436 L3HYPDH--CCDC175 BS_NKRYMHEP ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +18:42454989 18:42453932 LINC00907--LINC00907 BS_NKRYMHEP ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.53Mb]],duplication/non-canonical_splicing LINC00907 NA LINC00907 NA NA NA NA NA NA +1:219218712 1:219210532 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_NKRYMHEP ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +X:150471490 X:150462772 MAMLD1--MAMLD1 BS_NKRYMHEP ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_NKRYMHEP ARRIBA frameshift 8 3 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_NKRYMHEP ARRIBA in-frame 32 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_NKRYMHEP ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NKRYMHEP ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161710751 2:161620915 SLC4A10--SLC4A10 BS_NKRYMHEP ARRIBA other 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +5:122403865 5:122388567 SNCAIP--SNCAIP BS_NKRYMHEP ARRIBA frameshift 11 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.15Mb]],duplication/non-canonical_splicing SNCAIP NA SNCAIP NA Oncogene Oncogene NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_NKRYMHEP ARRIBA frameshift 27 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:114947320 1:114923449 SYCP1--SYCP1 BS_NKRYMHEP ARRIBA frameshift 55 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +3:12169906 3:12140651 SYN2--SYN2 BS_NKRYMHEP ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.19Mb]],duplication/non-canonical_splicing SYN2 NA SYN2 NA NA NA NA NA NA +4:16360636 4:16238771 TAPT1-AS1(40496)/ZEB2P1(50)--TAPT1-AS1 BS_NKRYMHEP ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +1:216321883 1:216327654 USH2A--USH2A BS_NKRYMHEP ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +X:54248697 X:54259338 WNK3--WNK3 BS_NKRYMHEP ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NNPEC7W1 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NNPEC7W1 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_NNPEC7W1 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +5:73684884 5:71881515 ARHGEF28--AC143336.1(125214)/MAP1B(225719) BS_NNPEC7W1 ARRIBA frameshift 6 0 high [],duplication ARHGEF28 NA AC143336.1 MAP1B NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_NNPEC7W1 ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NNPEC7W1 ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:159692715 6:149900538 SOD2--RAET1E-AS1 BS_NNPEC7W1 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr6:9.75Mb]],deletion/5'-5' SOD2 NA RAET1E-AS1 NA TumorSuppressorGene NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_NNPEC7W1 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NPQJ20KX ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NPQJ20KX ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_NPQJ20KX ARRIBA other 7 0 low [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +3:178801793 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_NPQJ20KX ARRIBA other 1 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_NPQJ20KX ARRIBA in-frame 2 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_NPQJ20KX ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NQB91P48 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NQB91P48 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_NQB91P48 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_NQB91P48 STARFUSION other 4 12 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +7:138844317 7:140783157 KIAA1549--BRAF BS_NQB91P48 ARRIBA in-frame 27 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138844317 7:140783157 KIAA1549--BRAF BS_NQB91P48 STARFUSION in-frame 27 3 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +10:94171496 10:93999624 PLCE1--PIPSL(38084)/PLCE1(31188) BS_NQB91P48 ARRIBA frameshift 3 1 high [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NQB91P48 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:35657774 6:52995631 RMRP--7SK BS_NQFH3GZH STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr9--chr1]] RMRP NA 7SK NA Oncogene NA NA NA NA +1:173573182 1:173598032 SLC9C2--SLC9C2 BS_NQFH3GZH ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.10Mb]],duplication/non-canonical_splicing SLC9C2 NA SLC9C2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NR3P3GN2 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NR3P3GN2 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_NR3P3GN2 ARRIBA frameshift 2 1 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +7:154053063 7:149891301 DPP6--AC092681.1 BS_NR3P3GN2 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:3.98Mb]],inversion DPP6 NA AC092681.1 NA NA NA NA NA NA +Y:5100707 Y:5098215 PCDH11Y--PCDH11Y BS_NR3P3GN2 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chrY:0.74Mb]],duplication/non-canonical_splicing PCDH11Y NA PCDH11Y NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NR3P3GN2 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:144429769 2:143435601 ZEB2--ARHGAP15 BS_NR9FRY5T ARRIBA frameshift 3 0 medium [GTEx,INTRACHROMOSOMAL[chr2:0.60Mb]],inversion ZEB2 NA ARHGAP15 NA Oncogene, TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NRFQEQKP ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NRFQEQKP ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_NRFQEQKP ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_NRFQEQKP ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_NRFQEQKP ARRIBA in-frame 6 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:108189645 18:58918271 NRCAM--ZNF532 BS_NRFQEQKP ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr7--chr18]],translocation NRCAM NA ZNF532 NA TumorSuppressorGene, Oncogene TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NRFQEQKP ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NRPG5K4K ARRIBA other 105 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NRPG5K4K ARRIBA other 105 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:48809641 2:48809118 AC009975.1--ELOBP3(28223)/AC009975.1(222) BS_NRPG5K4K ARRIBA other 8 9 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA +4:16426440 4:16316430 AC097515.1--TAPT1-AS1 BS_NRPG5K4K ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16421133 4:16238771 AC097515.1--TAPT1-AS1 BS_NRPG5K4K ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16320065 AC097515.1--TAPT1-AS1 BS_NRPG5K4K ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +15:61507178 15:61639712 AC104574.2--AC018618.1 BS_NRPG5K4K ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_REARRANGEMENT:-:[3900]],duplication AC104574.2 NA AC018618.1 NA NA NA NA NA NA +6:118813102 6:118856545 AL359634.1(29682)/MCM9(340)--MCM9 BS_NRPG5K4K ARRIBA other 3 0 high [],duplication AL359634.1 MCM9 MCM9 NA NA TumorSuppressorGene TumorSuppressorGene NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_NRPG5K4K ARRIBA other 42 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +9:22127563 9:22046751 CDKN2B-AS1(6466)/AL157937.1(76427)--CDKN2B-AS1 BS_NRPG5K4K ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +8:61376779 8:61299677 CLVS1--CLVS1 BS_NRPG5K4K ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.44Mb]],duplication/non-canonical_splicing CLVS1 NA CLVS1 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_NRPG5K4K ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137521866 7:137609609 DGKI--DGKI BS_NRPG5K4K ARRIBA frameshift 4 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_NRPG5K4K ARRIBA other 17 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178801793 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_NRPG5K4K ARRIBA other 2 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_NRPG5K4K ARRIBA other 8 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_NRPG5K4K ARRIBA in-frame 11 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +18:6977727 18:6980637 LAMA1--LAMA1 BS_NRPG5K4K ARRIBA frameshift 3 2 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA +2:8201947 2:8245140 LINC00298--LINC00299 BS_NRPG5K4K ARRIBA other 8 0 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00298 NA LINC00299 NA NA NA NA NA NA +2:8201947 2:8245140 LINC00299--LINC00298 BS_NRPG5K4K ARRIBA other 6 0 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00299 NA LINC00298 NA NA NA NA NA NA +2:8201947 2:8245140 LINC00299--LINC00299 BS_NRPG5K4K ARRIBA other 9 1 high [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA +2:8060348 2:8392968 LINC00299--LINC00299(9347)/AC011747.2(150624) BS_NRPG5K4K ARRIBA other 1 0 low [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA +12:85244909 12:85152280 LRRIQ1--LRRIQ1 BS_NRPG5K4K ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.23Mb]],duplication/non-canonical_splicing LRRIQ1 NA LRRIQ1 NA NA NA NA NA NA +X:150473802 X:150469745 MAMLD1--MAMLD1 BS_NRPG5K4K ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA +17:29046847 17:29044859 PIPOX--PIPOX BS_NRPG5K4K ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.11Mb]],duplication/non-canonical_splicing PIPOX NA PIPOX NA NA NA NA NA NA +13:19751271 13:19835689 PSPC1--ZMYM5 BS_NRPG5K4K ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_NRPG5K4K ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_NRPG5K4K ARRIBA frameshift 20 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +20:19889658 20:19799622 RIN2--AL121761.1 BS_NRPG5K4K ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr20:0.08Mb],LOCAL_REARRANGEMENT:+:[76846]],duplication RIN2 NA AL121761.1 NA NA NA NA NA NA +20:19935199 20:19799622 RIN2--AL121761.1 BS_NRPG5K4K ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr20:0.08Mb],LOCAL_REARRANGEMENT:+:[76846]],duplication RIN2 NA AL121761.1 NA NA NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_NRPG5K4K ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NRPG5K4K ARRIBA other 105 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:4600653 9:4629168 SPATA6L--SPATA6L BS_NRPG5K4K ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing SPATA6L NA SPATA6L NA NA NA NA NA NA +4:16337053 4:16256257 TAPT1-AS1(16913)/ZEB2P1(23633)--TAPT1-AS1 BS_NRPG5K4K ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +4:16355785 4:16238771 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_NRPG5K4K ARRIBA other 3 2 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +5:110387266 5:110424916 TMEM232--TMEM232 BS_NRPG5K4K ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_NRPG5K4K ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_NS7GSHB9 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +11:16655255 11:16645989 C11orf58--C11orf58 BS_NS7GSHB9 ARRIBA other 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr11:0.14Mb]],duplication C11orf58 NA C11orf58 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_NS7GSHB9 ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_NS7GSHB9 ARRIBA other 2 1 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +2:77518318 2:77522069 LRRTM4--LRRTM4 BS_NS7GSHB9 ARRIBA frameshift 19 4 high [SELFIE,INTRACHROMOSOMAL[chr2:0.85Mb]],duplication LRRTM4 NA LRRTM4 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_NS7GSHB9 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_NS7GSHB9 ARRIBA other 15 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_NS7GSHB9 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NT9NZYFD ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NT9NZYFD ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:132985512 4:133116511 AC110751.1--AC105383.1 BS_NT9NZYFD ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr4:0.09Mb],LOCAL_REARRANGEMENT:-:[86634]],duplication AC110751.1 NA AC105383.1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_NT9NZYFD ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_NT9NZYFD ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +14:36215058 14:36164120 AL162511.1--LINC00609 BS_NT9NZYFD ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_NT9NZYFD ARRIBA frameshift 26 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_NT9NZYFD ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_NT9NZYFD ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_NT9NZYFD ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_NT9NZYFD ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_NT9NZYFD ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_NT9NZYFD ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_NT9NZYFD ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +4:6007996 4:6011968 C4orf50--C4orf50 BS_NT9NZYFD ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing C4orf50 NA C4orf50 NA NA NA NA NA NA +5:61755944 5:61686883 C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_NT9NZYFD ARRIBA other 4 0 medium [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_NT9NZYFD ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_NT9NZYFD ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_NT9NZYFD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_NT9NZYFD ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_NT9NZYFD ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_NT9NZYFD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +7:137901354 7:141375394 CREB3L2--TMEM178B BS_NT9NZYFD ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr7:3.07Mb]],duplication/5'-5' CREB3L2 NA TMEM178B NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_NT9NZYFD ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +14:89870643 14:89932627 EFCAB11--EFCAB11 BS_NT9NZYFD ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA +9:23762006 9:23765099 ELAVL2--ELAVL2 BS_NT9NZYFD ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA +4:65414284 4:65420565 EPHA5--EPHA5 BS_NT9NZYFD ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.35Mb]],duplication/non-canonical_splicing EPHA5 NA EPHA5 NA Kinase, Kinase Kinase, Kinase NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_NT9NZYFD ARRIBA in-frame 85 14 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:115956452 6:116076202 FRK--FRK(15444)/NT5DC1(24647) BS_NT9NZYFD ARRIBA frameshift 2 0 medium [],duplication FRK NA FRK NT5DC1 Kinase, TumorSuppressorGene, Kinase Kinase, TumorSuppressorGene, Kinase NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_NT9NZYFD ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_NT9NZYFD ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_NT9NZYFD ARRIBA frameshift 4 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_NT9NZYFD ARRIBA frameshift 26 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_NT9NZYFD ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211082898 KCNH1--AL590132.1 BS_NT9NZYFD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_NT9NZYFD ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_NT9NZYFD ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_NT9NZYFD ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_NT9NZYFD ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_NT9NZYFD ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_NT9NZYFD ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_NT9NZYFD ARRIBA frameshift 26 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_NT9NZYFD ARRIBA frameshift 16 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +12:117761011 12:117761524 KSR2--KSR2 BS_NT9NZYFD ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.52Mb]],duplication/non-canonical_splicing KSR2 NA KSR2 NA Kinase, Kinase Kinase, Kinase NA NA NA +14:38745144 14:38334252 LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_NT9NZYFD ARRIBA other 3 1 medium [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_NT9NZYFD ARRIBA other 9 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_NT9NZYFD ARRIBA other 7 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_NT9NZYFD ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_NT9NZYFD ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_NT9NZYFD ARRIBA in-frame 21 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +7:39086031 7:38986246 POU6F2--POU6F2 BS_NT9NZYFD ARRIBA frameshift 4 1 medium [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +12:70656704 12:70701323 PTPRR--PTPRR BS_NT9NZYFD ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +9:35657755 6:52995634 RMRP--7SK BS_NT9NZYFD STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr9--chr1]] RMRP NA 7SK NA Oncogene NA NA NA NA +9:35657770 14:49586777 RMRP--AL139099.5 BS_NT9NZYFD STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL139099.5 NA Oncogene NA NA NA NA +9:35657837 14:49586591 RMRP--AL139099.5 BS_NT9NZYFD STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL139099.5 NA Oncogene NA NA NA NA +9:35657770 14:49586777 RMRP--RN7SL1 BS_NT9NZYFD STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL1 NA Oncogene NA NA NA NA +9:35657837 14:49586591 RMRP--RN7SL1 BS_NT9NZYFD STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL1 NA Oncogene NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_NT9NZYFD ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NT9NZYFD ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_NT9NZYFD ARRIBA other 6 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_NT9NZYFD ARRIBA frameshift 15 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_NT9NZYFD ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +3:36874126 3:36903275 TRANK1--TRANK1 BS_NT9NZYFD ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.12Mb]],duplication/non-canonical_splicing TRANK1 NA TRANK1 NA NA NA NA NA NA +12:72499635 12:72375990 TRHDE--TRHDE BS_NT9NZYFD ARRIBA frameshift 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr12:0.40Mb]],duplication TRHDE NA TRHDE NA NA NA NA NA NA +9:15199861 9:15226012 TTC39B--TTC39B BS_NT9NZYFD ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing TTC39B NA TTC39B NA Oncogene Oncogene NA NA NA +7:139279360 7:119390102 UBN2--AC079791.1(210953)/LINC02476(314454) BS_NT9NZYFD ARRIBA frameshift 4 1 high [],duplication UBN2 NA AC079791.1 LINC02476 NA NA NA NA NA +X:146955175 X:146916390 Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_NT9NZYFD ARRIBA other 10 4 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA +3:167282238 3:167373787 ZBBX--ZBBX BS_NT9NZYFD ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.14Mb]],duplication/non-canonical_splicing ZBBX NA ZBBX NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NVKGSMXS ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NVKGSMXS ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_NVKGSMXS ARRIBA frameshift 12 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_NVKGSMXS ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_NVKGSMXS ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_NVKGSMXS ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_NVKGSMXS ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +18:79307234 18:79193183 ATP9B--ATP9B BS_NVKGSMXS ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_NVKGSMXS ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_NVKGSMXS ARRIBA in-frame 48 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_NVKGSMXS ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_NVKGSMXS ARRIBA frameshift 12 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_NVKGSMXS ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_NVKGSMXS ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_NVKGSMXS ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_NVKGSMXS ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_NVKGSMXS ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_NVKGSMXS ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_NVKGSMXS ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +1:196373140 1:196479238 KCNT2--KCNT2 BS_NVKGSMXS ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_NVKGSMXS ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_NVKGSMXS ARRIBA other 5 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_NVKGSMXS ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NVKGSMXS ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NYS8TRCB ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NYS8TRCB ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:79671133 10:87449476 AL132656.2--MINPP1 BS_NYS8TRCB ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr10:7.83Mb]],deletion AL132656.2 NA MINPP1 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_NYS8TRCB ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_NYS8TRCB ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_NYS8TRCB ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_NYS8TRCB ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_NYS8TRCB ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_NYS8TRCB ARRIBA other 15 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_NYS8TRCB ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_NYS8TRCB ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_NYS8TRCB ARRIBA in-frame 18 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:71244603 8:71334174 EYA1--EYA1 BS_NYS8TRCB ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.16Mb]],duplication/non-canonical_splicing EYA1 NA EYA1 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_NYS8TRCB ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_NYS8TRCB ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_NYS8TRCB ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_NYS8TRCB ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_NYS8TRCB ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_NYS8TRCB ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_NYS8TRCB ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:210920069 KCNH1--AL590132.1 BS_NYS8TRCB ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_NYS8TRCB ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_NYS8TRCB ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_NYS8TRCB ARRIBA other 2 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +7:92492286 7:92457552 PEX1--GATAD1 BS_NYS8TRCB ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:0.03Mb],LOCAL_INVERSION:-:+:[28184]],duplication/3'-3' PEX1 NA GATAD1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_NYS8TRCB ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_NYS8TRCB ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_NYS8TRCB ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NYS8TRCB ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_NYS8TRCB ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NZ71XCG3 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NZ71XCG3 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_NZ71XCG3 ARRIBA other 4 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_NZ71XCG3 ARRIBA other 13 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_NZ71XCG3 ARRIBA frameshift 17 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_NZ71XCG3 ARRIBA other 2 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_NZ71XCG3 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_NZ71XCG3 ARRIBA other 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +17:46306309 17:46152969 LRRC37A--KANSL1 BS_NZ71XCG3 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:0.07Mb],LOCAL_INVERSION:+:-:[67344]],inversion LRRC37A NA KANSL1 NA NA NA NA NA NA +15:76009200 15:76052983 NRG4--NRG4 BS_NZ71XCG3 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_NZ71XCG3 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +13:80657039 13:80361601 PWWP2AP1--SPRY2(20650)/RNU6-61P(7825) BS_NZ71XCG3 ARRIBA other 2 1 medium [],duplication PWWP2AP1 NA SPRY2 RNU6-61P NA TumorSuppressorGene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NZ71XCG3 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:122403865 5:122555885 SNCAIP--MGC32805(76798)/LINC02201(73067) BS_NZ71XCG3 ARRIBA frameshift 10 1 medium [],inversion SNCAIP NA MGC32805 LINC02201 Oncogene NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_NZ71XCG3 ARRIBA frameshift 32 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:114913150 1:114885535 SYCP1--SYCP1 BS_NZ71XCG3 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_NZ71XCG3 ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +1:216321883 1:216327654 USH2A--USH2A BS_NZ71XCG3 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_P0QF87WC ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_P0QF87WC ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +9:18504956 10:124239725 ADAMTSL1--CHST15(146118)/OAT(157578) BS_P0QF87WC ARRIBA frameshift 2 0 medium [],translocation ADAMTSL1 NA CHST15 OAT NA NA NA NA NA +4:61733554 1:195690765 ADGRL3--AL353072.1(971529)/LINC01724(354231) BS_P0QF87WC ARRIBA frameshift 5 0 medium [],translocation ADGRL3 NA AL353072.1 LINC01724 NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_P0QF87WC ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +1:161912380 1:213474921 ATF6--RPL31P13(45844)/AL592402.1(17380) BS_P0QF87WC ARRIBA frameshift 3 0 high [],deletion ATF6 NA RPL31P13 AL592402.1 TranscriptionFactor NA NA NA NA +10:97935941 1:18960502 CRTAC1--IFFO2(3816)/AL137127.1(111608) BS_P0QF87WC ARRIBA frameshift 53 2 medium [],translocation CRTAC1 NA IFFO2 AL137127.1 NA NA NA NA NA +7:133997633 7:133024627 EXOC4--CHCHD3 BS_P0QF87WC ARRIBA frameshift 4 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr7:0.17Mb]],inversion EXOC4 NA CHCHD3 NA Oncogene TranscriptionFactor NA NA TCGAFusion +7:133997633 7:132975286 EXOC4--CHCHD3 BS_P0QF87WC ARRIBA in-frame 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr7:0.17Mb]],inversion EXOC4 NA CHCHD3 NA Oncogene TranscriptionFactor NA NA TCGAFusion +4:175812191 4:183632723 GPM6A--AC107214.2(115196)/RWDD4(6912) BS_P0QF87WC ARRIBA frameshift 6 0 medium [],inversion GPM6A NA AC107214.2 RWDD4 NA NA NA NA NA +2:17878950 2:15928979 KCNS3--MYCNOS BS_P0QF87WC ARRIBA other 11 0 medium [INTRACHROMOSOMAL[chr2:1.94Mb]],inversion KCNS3 NA MYCNOS NA NA NA NA NA NA +2:17878950 2:15928979 KCNS3--MYCNUT BS_P0QF87WC ARRIBA other 9 0 medium [INTRACHROMOSOMAL[chr2:1.94Mb]],inversion/3'-3' KCNS3 NA MYCNUT NA NA NA NA NA NA +7:23106146 7:5761138 KLHL7--RNF216 BS_P0QF87WC ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr7:17.32Mb]],inversion KLHL7 NA RNF216 NA NA Oncogene NA NA NA +5:154683037 5:83490098 MIR3141(86965)/MIR1303(2739)--VCAN BS_P0QF87WC ARRIBA other 3 0 medium [],duplication MIR3141 MIR1303 VCAN NA NA Oncogene NA NA NA +2:15558580 2:15776121 NBAS--LINC01804(31782)/AC113608.2(25626) BS_P0QF87WC ARRIBA frameshift 4 0 medium [],inversion NBAS NA LINC01804 AC113608.2 NA NA NA NA NA +2:15383215 20:17379689 NBAS--PCSK2 BS_P0QF87WC ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr2--chr20]],translocation/5'-5' NBAS NA PCSK2 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_P0QF87WC ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +15:88135101 15:88137561 NTRK3--NTRK3 BS_P0QF87WC ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.40Mb]],duplication/non-canonical_splicing NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +4:71555208 4:72997069 SLC4A4--RNU4ATAC9P(31766)/RNU6ATAC5P(29679) BS_P0QF87WC ARRIBA frameshift 2 0 medium [],deletion SLC4A4 NA RNU4ATAC9P RNU6ATAC5P NA NA NA NA NA +2:219477445 10:57101702 SPEG--SNORD2(505671)/MIR3924(202777) BS_P0QF87WC ARRIBA frameshift 3 0 high [],translocation SPEG NA SNORD2 MIR3924 Kinase, Kinase NA NA NA NA +3:184875152 3:182872356 VPS8--ATP11B BS_P0QF87WC ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr3:1.89Mb]],duplication VPS8 NA ATP11B NA NA NA NA NA NA +3:184870805 3:182872356 VPS8--ATP11B BS_P0QF87WC ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr3:1.89Mb]],duplication VPS8 NA ATP11B NA NA NA NA NA NA +6:52995909 14:49862666 7SK--RN7SL2 BS_P0W5VJH4 STARFUSION other 17 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995821 14:49862667 7SK--RN7SL2 BS_P0W5VJH4 STARFUSION other 12 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995788 14:49862666 7SK--RN7SL2 BS_P0W5VJH4 STARFUSION other 6 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995864 14:49862666 7SK--RN7SL2 BS_P0W5VJH4 STARFUSION other 6 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995915 14:49862665 7SK--RN7SL2 BS_P0W5VJH4 STARFUSION other 5 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995909 14:49862676 7SK--RN7SL2 BS_P0W5VJH4 STARFUSION other 4 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995882 14:49862667 7SK--RN7SL2 BS_P0W5VJH4 STARFUSION other 4 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995846 14:49862665 7SK--RN7SL2 BS_P0W5VJH4 STARFUSION other 4 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995777 14:49862678 7SK--RN7SL2 BS_P0W5VJH4 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995830 14:49862656 7SK--RN7SL2 BS_P0W5VJH4 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995807 14:49862667 7SK--RN7SL2 BS_P0W5VJH4 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_P0W5VJH4 ARRIBA other 5 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +14:49586869 6:52995633 AL139099.5--7SK BS_P0W5VJH4 STARFUSION other 20 16 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +14:49586856 6:52995628 AL139099.5--7SK BS_P0W5VJH4 STARFUSION other 6 16 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +14:20343075 14:49862667 AL355075.4--RN7SL2 BS_P0W5VJH4 STARFUSION other 16 19 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] AL355075.4 NA RN7SL2 NA NA NA NA NA NA +10:132892333 10:132916682 CFAP46--CFAP46 BS_P0W5VJH4 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/non-canonical_splicing CFAP46 NA CFAP46 NA NA NA NA NA NA +3:57382262 3:57385429 DNAH12--DNAH12 BS_P0W5VJH4 ARRIBA in-frame 4 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +16:21062482 16:21087060 DNAH3--DNAH3 BS_P0W5VJH4 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr16:0.23Mb]],duplication/non-canonical_splicing DNAH3 NA DNAH3 NA NA NA NA NA NA +5:13844837 5:13864637 DNAH5--DNAH5 BS_P0W5VJH4 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.25Mb]],duplication/non-canonical_splicing DNAH5 NA DNAH5 NA NA NA NA NA NA +17:11883750 17:11880078 DNAH9--DNAH9 BS_P0W5VJH4 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.37Mb]],duplication/non-canonical_splicing DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA +3:7461722 3:7298684 GRM7--GRM7 BS_P0W5VJH4 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.97Mb]],duplication/non-canonical_splicing GRM7 NA GRM7 NA NA NA NA NA NA +3:27256296 3:27304971 NEK10--NEK10 BS_P0W5VJH4 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr3:0.26Mb]],duplication/non-canonical_splicing NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA +6:51836404 6:51870639 PKHD1--PKHD1 BS_P0W5VJH4 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.47Mb]],duplication/non-canonical_splicing PKHD1 NA PKHD1 NA Oncogene Oncogene NA NA NA +14:49586869 6:52995633 RN7SL1--RN7SK BS_P0W5VJH4 STARFUSION other 20 16 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL1 NA RN7SK NA NA NA NA NA NA +14:49586856 6:52995628 RN7SL1--RN7SK BS_P0W5VJH4 STARFUSION other 6 16 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL1 NA RN7SK NA NA NA NA NA NA +14:20343075 14:49862667 RPPH1--RN7SL2 BS_P0W5VJH4 STARFUSION other 16 19 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RPPH1 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_P277RYX5 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_P277RYX5 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:151705246 5:43235810 GATB--NIM1K BS_P277RYX5 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr4--chr5]],translocation GATB NA NIM1K NA NA Kinase NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_P277RYX5 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_P39SQPTS ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_P39SQPTS ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_P39SQPTS ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:34091883 6:34133859 GRM4--GRM4 BS_P39SQPTS ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_P39SQPTS ARRIBA frameshift 37 3 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +2:77518318 2:77522069 LRRTM4--LRRTM4 BS_P39SQPTS ARRIBA frameshift 10 3 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.85Mb]],duplication LRRTM4 NA LRRTM4 NA NA NA NA NA NA +14:46920012 14:47035304 MDGA2--MDGA2 BS_P39SQPTS ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +2:1839149 2:1892287 MYT1L--MYT1L BS_P39SQPTS ARRIBA frameshift 17 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_P39SQPTS ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19751271 13:19835689 PSPC1--ZMYM5 BS_P39SQPTS ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +9:35657768 14:49862664 RMRP--RN7SL2 BS_P39SQPTS STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL2 NA Oncogene NA NA NA NA +14:49862573 14:20343272 RN7SL2--AL355075.4 BS_P39SQPTS STARFUSION other 4 10 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862576 14:20343273 RN7SL2--RPPH1 BS_P39SQPTS STARFUSION other 4 10 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862570 14:20343396 RN7SL2--RPPH1 BS_P39SQPTS STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_P39SQPTS ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:130288227 6:130313093 SAMD3--SAMD3 BS_P39SQPTS ARRIBA other 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA +19:54422410 19:53670583 TTYH1--MIR512-2(1329)/MIR1323(1385) BS_P39SQPTS ARRIBA frameshift 9 0 medium [],duplication TTYH1 NA MIR512-2 MIR1323 Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_P44PE00R ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_P44PE00R ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_P44PE00R ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +21:15511119 21:15513934 AJ009632.2--AJ009632.2 BS_P44PE00R ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.26Mb]],duplication/non-canonical_splicing AJ009632.2 NA AJ009632.2 NA NA NA NA NA NA +18:79307234 18:79193183 ATP9B--ATP9B BS_P44PE00R ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_P44PE00R ARRIBA in-frame 25 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_P44PE00R ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_P44PE00R ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_P44PE00R ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +17:66198221 16:74305273 AC006120.1--AC009120.2 BS_P4D8Y3S8 ARRIBA other 10 0 low [INTERCHROMOSOMAL[chr17--chr16]],translocation/5'-5' AC006120.1 NA AC009120.2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_P4D8Y3S8 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_P4D8Y3S8 ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +13:87810484 13:87615755 AL445647.1--MIR4500HG BS_P4D8Y3S8 STARFUSION other 42 7 NA [INTRACHROMOSOMAL[chr13:0.14Mb]] AL445647.1 NA MIR4500HG NA NA NA NA NA NA +22:23273774 22:40555102 BCR--MKL1 BS_P4D8Y3S8 ARRIBA frameshift 12 1 high [INTRACHROMOSOMAL[chr22:17.09Mb]],deletion/5'-5' BCR NA MKL1 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene Oncogene NA NA NA +4:44680532 5:170645042 GUF1--KCNIP1 BS_P4D8Y3S8 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr4--chr5]],translocation GUF1 NA KCNIP1 NA NA NA NA NA NA +1:41700916 22:39729376 HIVEP3--CACNA1I(39639)/ENTHD1(13668) BS_P4D8Y3S8 ARRIBA other 6 0 high [],translocation HIVEP3 NA CACNA1I ENTHD1 TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_P4D8Y3S8 ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +22:30741369 10:102797993 OSBP2--WBP1L BS_P4D8Y3S8 ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr22--chr10]],translocation OSBP2 NA WBP1L NA NA NA NA NA NA +22:30695553 10:102797993 OSBP2--WBP1L BS_P4D8Y3S8 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr22--chr10]],translocation OSBP2 NA WBP1L NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_P4D8Y3S8 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +15:92393924 9:35072578 ST8SIA2--VCP BS_P4D8Y3S8 STARFUSION other 14 0 NA [FA_CancerSupp,INTERCHROMOSOMAL[chr15--chr9]] ST8SIA2 NA VCP NA NA NA NA NA NA +10:102810054 15:72518067 WBP1L--ARIH1 BS_P4D8Y3S8 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr10--chr15]],translocation WBP1L NA ARIH1 NA NA NA NA NA NA +10:102744143 1:41524910 WBP1L--HIVEP3 BS_P4D8Y3S8 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr10--chr1]],translocation WBP1L NA HIVEP3 NA NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_P4NX9MPA ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_P4NX9MPA ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_P4NX9MPA ARRIBA other 11 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +9:22097364 9:22029433 CDKN2B-AS1--CDKN2B-AS1 BS_P4NX9MPA ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.13Mb]],duplication/non-canonical_splicing CDKN2B-AS1 NA CDKN2B-AS1 NA NA NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_P4NX9MPA ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +3:178748404 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_P4NX9MPA ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_P4NX9MPA ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_P4NX9MPA ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_P78SMRBS ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_P78SMRBS ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_P78SMRBS ARRIBA other 3 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_P78SMRBS ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_P78SMRBS ARRIBA in-frame 16 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +10:23008931 10:22981340 ARMC3--ARMC3 BS_P78SMRBS ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.11Mb]],duplication/non-canonical_splicing ARMC3 NA ARMC3 NA NA NA NA NA NA +10:132846057 10:132851305 CFAP46--CFAP46 BS_P78SMRBS ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/non-canonical_splicing CFAP46 NA CFAP46 NA NA NA NA NA NA +1:111353565 11:65450382 CHIAP3--mascRNA-menRNA(4784)/AP000769.1(4876) BS_P78SMRBS ARRIBA other 1 1 medium [],translocation CHIAP3 NA mascRNA-menRNA AP000769.1 NA NA NA NA NA +12:123859268 12:123853206 DNAH10--DNAH10 BS_P78SMRBS ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA +6:138889031 6:138842979 ECT2L--ECT2L BS_P78SMRBS ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA +11:33552241 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_P78SMRBS ARRIBA frameshift 2 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +18:6977727 18:6980637 LAMA1--LAMA1 BS_P78SMRBS ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA +14:52123673 14:52188234 LINC02319--AL118557.1(32055)/PTGDR(79479) BS_P78SMRBS ARRIBA other 5 1 high [],duplication LINC02319 NA AL118557.1 PTGDR NA NA NA TumorSuppressorGene NA +13:52123838 12:95842555 NEK5--AC090001.1 BS_P78SMRBS ARRIBA frameshift 3 0 low [INTERCHROMOSOMAL[chr13--chr12]],translocation NEK5 NA AC090001.1 NA Kinase, Kinase NA NA NA NA +15:76009200 15:76052983 NRG4--NRG4 BS_P78SMRBS ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_P78SMRBS ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_P78SMRBS ARRIBA frameshift 23 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_P78SMRBS ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_P78SMRBS ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +10:94032252 10:94005450 PLCE1--PIPSL(43910)/PLCE1(25362) BS_P7EY9DXG ARRIBA frameshift 2 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_P7EY9DXG ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +11:62854887 11:18292938 SNHG1--HPS5 BS_P7EY9DXG ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr11:44.53Mb]],deletion SNHG1 NA HPS5 NA NA NA NA NA NA +2:89581006 4:34858290 AC006453.2--AC093913.1(143692)/snoU13(107951) BS_P9JP6JFA ARRIBA other 10 0 medium [],translocation AC006453.2 NA AC093913.1 snoU13 NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_P9JP6JFA ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +14:49586868 14:20343401 AL139099.5--AL355075.4 BS_P9JP6JFA STARFUSION other 7 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586856 14:20343403 AL139099.5--AL355075.4 BS_P9JP6JFA STARFUSION other 7 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586835 14:20343400 AL139099.5--AL355075.4 BS_P9JP6JFA STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586762 14:20343401 AL139099.5--AL355075.4 BS_P9JP6JFA STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586856 14:20343403 AL139099.5--RPPH1 BS_P9JP6JFA STARFUSION other 7 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +14:49586868 14:20343401 AL139099.5--RPPH1 BS_P9JP6JFA STARFUSION other 7 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +14:49586836 14:20343397 AL139099.5--RPPH1 BS_P9JP6JFA STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +14:49586762 14:20343401 AL139099.5--RPPH1 BS_P9JP6JFA STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +14:20343079 14:49862667 AL355075.4--RN7SL2 BS_P9JP6JFA STARFUSION other 9 14 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] AL355075.4 NA RN7SL2 NA NA NA NA NA NA +7:101154517 7:43988247 AP1S1--AC004951.2 BS_P9JP6JFA ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:57.16Mb]],inversion AP1S1 NA AC004951.2 NA NA NA NA NA NA +7:101154517 7:43988247 AP1S1--POLR2J4 BS_P9JP6JFA ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:57.14Mb]],inversion AP1S1 NA POLR2J4 NA NA NA NA NA NA +10:72128082 10:66595835 ASCC1--CTNNA3 BS_P9JP6JFA ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr10:4.40Mb]],inversion/5'-5' ASCC1 NA CTNNA3 NA NA TumorSuppressorGene NA NA NA +5:173616200 17:21782880 BOD1--AC243725.1 BS_P9JP6JFA ARRIBA frameshift 4 1 medium [INTERCHROMOSOMAL[chr5--chr17]],translocation BOD1 NA AC243725.1 NA NA NA NA NA NA +5:173616200 17:21775839 BOD1--AC243725.1 BS_P9JP6JFA ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr5--chr17]],translocation BOD1 NA AC243725.1 NA NA NA NA NA NA +10:68761192 10:86206648 CCAR1--GRID1 BS_P9JP6JFA ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chr10:16.81Mb]],inversion CCAR1 NA GRID1 NA TumorSuppressorGene NA NA NA NA +10:125110990 10:68736876 CTBP2--CCAR1 BS_P9JP6JFA ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr10:56.19Mb]],inversion CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA +10:125160319 10:68736876 CTBP2--CCAR1 BS_P9JP6JFA ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:56.19Mb]],inversion CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA +4:186138823 2:65790104 FAM149A--AC007741.1 BS_P9JP6JFA ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr4--chr2]],translocation FAM149A NA AC007741.1 NA NA NA NA NA NA +10:100540782 10:132023848 HIF1AN--AL162274.3(24002)/JAKMIP3(80823) BS_P9JP6JFA ARRIBA frameshift 4 1 high [],inversion HIF1AN NA AL162274.3 JAKMIP3 NA NA NA NA NA +6:73133641 4:73061920 KCNQ5--COX18 BS_P9JP6JFA ARRIBA frameshift 4 0 low [INTERCHROMOSOMAL[chr6--chr4]],translocation KCNQ5 NA COX18 NA Oncogene NA NA NA NA +11:47638699 4:34259226 MTCH2--LINC02484 BS_P9JP6JFA ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr11--chr4]],translocation MTCH2 NA LINC02484 NA NA NA NA NA NA +10:133402773 10:80233664 MTG1--AL513174.1 BS_P9JP6JFA ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr10:53.15Mb]],duplication MTG1 NA AL513174.1 NA NA NA NA NA NA +13:79533456 13:104709938 NDFIP2--ATP6V1G1P7(1264970)/RPL7P45(104389) BS_P9JP6JFA ARRIBA frameshift 2 0 medium [],inversion NDFIP2 NA ATP6V1G1P7 RPL7P45 NA NA NA NA NA +4:169441363 2:65790085 NEK1--AC007741.1 BS_P9JP6JFA ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr4--chr2]],translocation/5'-5' NEK1 NA AC007741.1 NA Kinase, Kinase NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_P9JP6JFA ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +10:70479059 10:125039155 PALD1--CTBP2 BS_P9JP6JFA ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:54.42Mb]],inversion PALD1 NA CTBP2 NA NA NA NA NA NA +11:65618179 11:56379148 PCNX3--OR8U1(2595)/OR8L1P(2487) BS_P9JP6JFA ARRIBA frameshift 3 0 low [],duplication PCNX3 NA OR8U1 OR8L1P NA NA NA NA NA +4:156970786 4:120799745 PDGFC--PRDM5 BS_P9JP6JFA ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr4:35.84Mb]],deletion PDGFC NA PRDM5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +11:479152 11:10042981 PTDSS2--SBF2 BS_P9JP6JFA ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr11:9.29Mb]],inversion PTDSS2 NA SBF2 NA NA NA NA NA NA +14:49586868 14:20343401 RN7SL1--AL355075.4 BS_P9JP6JFA STARFUSION other 7 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586856 14:20343403 RN7SL1--AL355075.4 BS_P9JP6JFA STARFUSION other 7 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586840 14:20343397 RN7SL1--AL355075.4 BS_P9JP6JFA STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586762 14:20343401 RN7SL1--AL355075.4 BS_P9JP6JFA STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586856 14:20343403 RN7SL1--RPPH1 BS_P9JP6JFA STARFUSION other 7 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +14:49586868 14:20343401 RN7SL1--RPPH1 BS_P9JP6JFA STARFUSION other 7 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +14:49586835 14:20343400 RN7SL1--RPPH1 BS_P9JP6JFA STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +14:49586762 14:20343401 RN7SL1--RPPH1 BS_P9JP6JFA STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +14:20343079 14:49862667 RPPH1--RN7SL2 BS_P9JP6JFA STARFUSION other 9 14 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RPPH1 NA RN7SL2 NA NA NA NA NA NA +4:42018170 4:63474138 SLC30A9--AC093730.1 BS_P9JP6JFA ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr4:21.38Mb]],inversion SLC30A9 NA AC093730.1 NA NA NA NA NA NA +4:42001780 4:63474138 SLC30A9--AC093730.1 BS_P9JP6JFA ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr4:21.38Mb]],inversion SLC30A9 NA AC093730.1 NA NA NA NA NA NA +4:42018170 4:63620822 SLC30A9--AC093730.1(126544)/TECRL(654435) BS_P9JP6JFA ARRIBA frameshift 3 1 high [],inversion SLC30A9 NA AC093730.1 TECRL NA NA NA NA NA +16:21478091 4:60079794 SMG1P3--AC097655.1(41208)/LINC02496(670792) BS_P9JP6JFA ARRIBA other 3 0 medium [],translocation SMG1P3 NA AC097655.1 LINC02496 NA NA NA NA NA +7:47396800 7:43665722 TNS3--COA1 BS_P9JP6JFA ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr7:3.55Mb]],deletion TNS3 NA COA1 NA NA NA NA NA NA +7:47396800 7:43648652 TNS3--COA1 BS_P9JP6JFA ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr7:3.55Mb]],deletion TNS3 NA COA1 NA NA NA NA NA NA +7:47396800 7:43650712 TNS3--COA1 BS_P9JP6JFA ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:3.55Mb]],deletion TNS3 NA COA1 NA NA NA NA NA NA +9:33912098 7:47104016 UBE2R2--AC004870.3(24888)/TNS3(171138) BS_P9JP6JFA ARRIBA frameshift 3 0 medium [],translocation UBE2R2 NA AC004870.3 TNS3 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_PEP9NZXN ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_PEP9NZXN ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_PEP9NZXN ARRIBA other 19 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +2:139368484 2:139339254 AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_PEP9NZXN ARRIBA other 7 1 high [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_PEP9NZXN ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +6:118813102 6:118856545 AL359634.1(29682)/MCM9(340)--MCM9 BS_PEP9NZXN ARRIBA other 3 0 medium [],duplication AL359634.1 MCM9 MCM9 NA NA TumorSuppressorGene TumorSuppressorGene NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_PEP9NZXN ARRIBA other 6 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +21:40692810 21:40708771 DSCAM--DSCAM BS_PEP9NZXN ARRIBA in-frame 31 5 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_PEP9NZXN ARRIBA other 20 4 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_PEP9NZXN ARRIBA in-frame 17 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +8:10480192 8:10446339 LINCR-0001--AC104964.2(8027)/LINCR-0001(28226) BS_PEP9NZXN ARRIBA other 2 1 medium [],duplication LINCR-0001 NA AC104964.2 LINCR-0001 NA NA NA NA NA +2:50539095 2:50538783 NRXN1--NRXN1 BS_PEP9NZXN ARRIBA other 5 0 high [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:1.31Mb]],inversion/3'-3' NRXN1 NA NRXN1 NA NA NA NA NA NA +11:73707420 6:43178838 RAB6A--SRF BS_PEP9NZXN ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr11--chr6]],translocation/5'-5' RAB6A NA SRF NA NA TranscriptionFactor NA NA NA +12:116741094 12:116740345 RNFT2--RNFT2 BS_PEP9NZXN ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.12Mb]],duplication/non-canonical_splicing RNFT2 NA RNFT2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_PEP9NZXN ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_PEP9NZXN ARRIBA other 9 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +6:43178418 11:73679720 SRF--RAB6A BS_PEP9NZXN ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr6--chr11]],translocation/3'-3' SRF NA RAB6A NA TranscriptionFactor NA NA NA NA +X:54248697 X:54259338 WNK3--WNK3 BS_PEP9NZXN ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_PGHK1JRW ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_PGHK1JRW ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +22:23182239 22:23894772 BCR--MIF BS_PGHK1JRW ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr22:0.58Mb]],deletion BCR NA MIF NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene Oncogene NA NA NA +12:1263165 1:29011865 ERC1--EPB41 BS_PGHK1JRW ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr12--chr1]],translocation ERC1 NA EPB41 NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA +5:144207546 5:144758616 KCTD16--RN7SKP246(222946)/NAMPTP2(243237) BS_PGHK1JRW ARRIBA frameshift 2 0 medium [],deletion KCTD16 NA RN7SKP246 NAMPTP2 NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_PGHK1JRW ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +1:19327788 22:23328916 PQLC2--LINC02556(423)/CES5AP1(30687) BS_PGHK1JRW ARRIBA other 7 0 medium [],translocation PQLC2 NA LINC02556 CES5AP1 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_PGHK1JRW ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:62663236 14:21759897 C11orf98--RPL4P1(8351)/TRAV6(8592) BS_PGK832G2 ARRIBA frameshift 4 0 high [],translocation C11orf98 NA RPL4P1 TRAV6 NA NA NA NA NA +22:37519343 22:37580281 CARD10--LGALS2 BS_PGK832G2 ARRIBA other 29 0 high [INTRACHROMOSOMAL[chr22:0.05Mb],LOCAL_REARRANGEMENT:-:[50704]],duplication CARD10 NA LGALS2 NA NA NA NA NA TCGAFusion +22:37519343 22:37579985 CARD10--LGALS2 BS_PGK832G2 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:0.05Mb],LOCAL_REARRANGEMENT:-:[50704]],duplication CARD10 NA LGALS2 NA NA NA NA NA TCGAFusion +22:37519343 22:37571931 CARD10--LGALS2 BS_PGK832G2 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr22:0.05Mb],LOCAL_REARRANGEMENT:-:[50704]],duplication CARD10 NA LGALS2 NA NA NA NA NA TCGAFusion +22:37519343 22:37580281 CARD10--LGALS2 BS_PGK832G2 STARFUSION other 25 1 NA [INTRACHROMOSOMAL[chr22:0.05Mb],LOCAL_REARRANGEMENT:-:[50704]] CARD10 NA LGALS2 NA NA NA NA NA TCGAFusion +2:207570321 2:213317219 CREB1--SPAG16 BS_PGK832G2 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:5.68Mb]],deletion CREB1 NA SPAG16 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +2:207530134 2:213310059 CREB1--SPAG16 BS_PGK832G2 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:5.68Mb]],deletion CREB1 NA SPAG16 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +14:101986764 15:44717843 DYNC1H1--B2M BS_PGK832G2 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr14--chr15]],translocation DYNC1H1 NA B2M NA NA CosmicCensus, Oncogene NA NA NA +11:62663236 14:21759897 LBHD1--RPL4P1(8351)/TRAV6(8592) BS_PGK832G2 ARRIBA frameshift 3 0 medium [],translocation LBHD1 NA RPL4P1 TRAV6 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_PJPGVD62 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_PJPGVD62 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_PJPGVD62 ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +2:211561903 2:211630594 ERBB4--ERBB4 BS_PJPGVD62 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:1.16Mb]],duplication/non-canonical_splicing ERBB4 NA ERBB4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +12:68835475 12:54283825 MDM2--HNRNPA1 BS_PJPGVD62 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr12:14.52Mb]],duplication MDM2 NA HNRNPA1 NA CosmicCensus, Oncogene NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_PJPGVD62 ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_PJPGVD62 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +20:19960811 20:19799622 RIN2--AL121761.1 BS_PJPGVD62 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr20:0.08Mb],LOCAL_REARRANGEMENT:+:[76846]],duplication RIN2 NA AL121761.1 NA NA NA NA NA NA +20:19935199 20:19799622 RIN2--AL121761.1 BS_PJPGVD62 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr20:0.08Mb],LOCAL_REARRANGEMENT:+:[76846]],duplication RIN2 NA AL121761.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_PJPGVD62 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:22401277 10:22359411 SPAG6--SPAG6 BS_PJPGVD62 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.11Mb]],duplication SPAG6 NA SPAG6 NA NA NA NA NA NA +3:121157627 3:120954940 STXBP5L--STXBP5L BS_PJPGVD62 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.52Mb]],duplication/non-canonical_splicing STXBP5L NA STXBP5L NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_PK18H7E7 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_PK18H7E7 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_PK18H7E7 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_PK18H7E7 ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +8:38467981 8:39531605 FGFR1--AC123767.1 BS_PK18H7E7 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:1.05Mb]],inversion FGFR1 NA AC123767.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +8:38467981 8:39471598 FGFR1--ADAM3A BS_PK18H7E7 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr8:0.98Mb]],inversion/5'-5' FGFR1 NA ADAM3A NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +8:41599304 8:32854328 GPAT4--NRG1(86369)/RNU6-663P(57165) BS_PK18H7E7 ARRIBA frameshift 1 2 high [],duplication GPAT4 NA NRG1 RNU6-663P NA CosmicCensus NA NA NA +7:138867975 7:140781693 KIAA1549--BRAF BS_PK18H7E7 ARRIBA in-frame 9 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +14:38745144 14:38334252 LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_PK18H7E7 ARRIBA other 2 0 low [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_PK18H7E7 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_PKK3BZRG ARRIBA other 12 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +3:167140689 3:167282495 AC092965.1(74369)/ZBBX(99598)--ZBBX BS_PKK3BZRG ARRIBA other 3 0 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +6:44376473 6:44352726 AL353588.1--AL353588.1 BS_PKK3BZRG ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing AL353588.1 NA AL353588.1 NA NA NA NA NA NA +12:123859268 12:123853206 DNAH10--DNAH10 BS_PKK3BZRG ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA +3:57501321 3:57502479 DNAH12--DNAH12 BS_PKK3BZRG ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +5:179619275 8:143923468 HNRNPH1--PLEC BS_PKK3BZRG ARRIBA frameshift 1 1 high [INTERCHROMOSOMAL[chr5--chr8]],translocation HNRNPH1 NA PLEC NA NA NA NA NA NA +14:60019260 14:59997656 LRRC9--LRRC9 BS_PKK3BZRG ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +17:62722488 17:62725104 MARCH10--MARCH10 BS_PKK3BZRG ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.11Mb]],duplication/non-canonical_splicing MARCH10 NA MARCH10 NA NA NA NA NA NA +1:173573182 1:173587830 SLC9C2--SLC9C2 BS_PKK3BZRG ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.10Mb]],duplication/non-canonical_splicing SLC9C2 NA SLC9C2 NA NA NA NA NA NA +4:16328660 4:16288884 TAPT1-AS1(8520)/ZEB2P1(32026)--TAPT1-AS1 BS_PKK3BZRG ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_PKK3BZRG ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_PKW05VZV ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_PKW05VZV ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_PKW05VZV ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +2:206617983 12:50101082 ADAM23--SMARCD1(370)/GPD1(2737) BS_PKW05VZV ARRIBA other 2 0 low [],translocation ADAM23 NA SMARCD1 GPD1 Oncogene CosmicCensus NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_PKW05VZV ARRIBA other 3 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +6:127453844 6:117907368 KIAA0408--NUS1(196728)/SLC35F1(158) BS_PKW05VZV ARRIBA frameshift 2 0 low [],inversion KIAA0408 NA NUS1 SLC35F1 NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_PKW05VZV ARRIBA other 2 0 medium [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_PKW05VZV ARRIBA other 6 0 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_PKW05VZV ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61052135 14:60968229 SLC38A6--MNAT1 BS_PKW05VZV ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr14:0.01Mb],LOCAL_REARRANGEMENT:+:[11161]],duplication SLC38A6 NA MNAT1 NA NA Oncogene NA NA NA +6:127453844 6:117907368 SOGA3--NUS1(196728)/SLC35F1(158) BS_PKW05VZV ARRIBA other 2 0 low [],inversion SOGA3 NA NUS1 SLC35F1 NA NA NA NA NA +13:95301241 13:95497125 ABCC4--CLDN10-AS1 BS_PN2CE34A ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr13:0.18Mb]],duplication ABCC4 NA CLDN10-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_PN2CE34A ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_PN2CE34A ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +21:29321514 3:49077038 BACH1--QRICH1 BS_PN2CE34A ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr21--chr3]],translocation BACH1 NA QRICH1 NA TranscriptionFactor NA NA NA NA +11:126306744 11:102309885 DCPS--AP000942.4(1088)/RNU6-952P(3837) BS_PN2CE34A ARRIBA frameshift 4 0 medium [],duplication DCPS NA AP000942.4 RNU6-952P NA NA NA NA NA +3:124796388 3:53702641 ITGB5--CACNA1D BS_PN2CE34A ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr3:70.95Mb]],inversion ITGB5 NA CACNA1D NA NA CosmicCensus NA NA NA +2:225513672 2:225312720 NYAP2--DOCK10(270275)/NYAP2(86990) BS_PN2CE34A ARRIBA frameshift 2 1 medium [],duplication NYAP2 NA DOCK10 NYAP2 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_PN2CE34A ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +X:124063205 X:68239197 STAG2--OPHN1 BS_PN2CE34A ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chrX:55.53Mb]],duplication/5'-5' STAG2 NA OPHN1 NA CosmicCensus, Oncogene NA NA NA NA +11:102223752 11:126234995 YAP1--FAM118B BS_PN2CE34A ARRIBA in-frame 3 1 high [HaasMedCancer,INTRACHROMOSOMAL[chr11:23.98Mb]],deletion YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA +2:99554311 2:102841437 AFF3--TMEM182 BS_PNYN0AYD ARRIBA frameshift 3 0 medium [ChimerSeq,INTRACHROMOSOMAL[chr2:2.59Mb]],inversion AFF3 NA TMEM182 NA CosmicCensus, Oncogene NA NA NA TCGAFusion +2:99554311 2:102843412 AFF3--TMEM182 BS_PNYN0AYD ARRIBA frameshift 2 0 low [ChimerSeq,INTRACHROMOSOMAL[chr2:2.59Mb]],inversion AFF3 NA TMEM182 NA CosmicCensus, Oncogene NA NA NA TCGAFusion +6:99425898 6:109727109 AL513550.1--FIG4 BS_PNYN0AYD ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr6:10.26Mb]],deletion AL513550.1 NA FIG4 NA NA NA NA NA NA +6:99425898 6:109732637 AL513550.1--FIG4 BS_PNYN0AYD ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr6:10.26Mb]],deletion AL513550.1 NA FIG4 NA NA NA NA NA NA +4:41142987 4:40544506 APBB2--RBM47 BS_PNYN0AYD ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr4:0.18Mb]],deletion APBB2 NA RBM47 NA NA NA NA NA NA +6:138280164 6:133456753 ARFGEF3--AL024497.2 BS_PNYN0AYD ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr6:4.71Mb]],inversion ARFGEF3 NA AL024497.2 NA NA NA NA NA NA +6:138280164 6:133456753 ARFGEF3--EYA4 BS_PNYN0AYD ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr6:4.63Mb]],inversion/3'-3' ARFGEF3 NA EYA4 NA NA TumorSuppressorGene, Oncogene NA NA NA +12:107022084 6:103868072 CRY1--SNORA33(284804)/R3HDM2P2(149561) BS_PNYN0AYD ARRIBA frameshift 4 0 medium [],translocation CRY1 NA SNORA33 R3HDM2P2 NA NA NA NA NA +12:107022084 6:104004836 CRY1--SNORA33(421568)/R3HDM2P2(12797) BS_PNYN0AYD ARRIBA frameshift 3 1 medium [],translocation CRY1 NA SNORA33 R3HDM2P2 NA NA NA NA NA +12:1028572 11:123340481 ERC1--PHBP17 BS_PNYN0AYD ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr12--chr11]],translocation ERC1 NA PHBP17 NA CosmicCensus, Oncogene NA NA NA NA +4:44704343 4:33721309 GNPDA2--AC097535.1(283432)/AC016687.3(55038) BS_PNYN0AYD ARRIBA other 18 4 medium [],inversion GNPDA2 NA AC097535.1 AC016687.3 NA NA NA NA NA +18:13438384 9:17235658 LDLRAD4--CNTLN BS_PNYN0AYD ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr18--chr9]],translocation LDLRAD4 NA CNTLN NA NA NA NA NA NA +18:13438384 9:17330632 LDLRAD4--CNTLN BS_PNYN0AYD ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr18--chr9]],translocation LDLRAD4 NA CNTLN NA NA NA NA NA NA +17:2400640 8:47778434 MNT--PRKDC BS_PNYN0AYD ARRIBA in-frame 32 0 high [INTERCHROMOSOMAL[chr17--chr8]],translocation/5'-5' MNT NA PRKDC NA TumorSuppressorGene, TranscriptionFactor Kinase NA NA NA +15:96331578 15:93849022 NR2F2--AC103996.3 BS_PNYN0AYD ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:2.47Mb]],inversion NR2F2 NA AC103996.3 NA TranscriptionFactor NA NA NA NA +15:96331578 15:93849022 NR2F2--LINC01579 BS_PNYN0AYD ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:2.26Mb]],inversion NR2F2 NA LINC01579 NA TranscriptionFactor NA NA NA NA +16:570096 12:12141 PIGQ--DDX11L8(169) BS_PNYN0AYD ARRIBA other 2 0 medium [],translocation PIGQ NA DDX11L8 NA NA NA NA NA NA +20:49568043 9:23006197 PTGIS--AL391117.1 BS_PNYN0AYD ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr20--chr9]],translocation PTGIS NA AL391117.1 NA Oncogene NA NA NA NA +20:49568043 9:22874319 PTGIS--AL391117.1 BS_PNYN0AYD ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr20--chr9]],translocation PTGIS NA AL391117.1 NA Oncogene NA NA NA NA +20:3963875 20:13783183 RNF24--ESF1 BS_PNYN0AYD ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr20:9.70Mb]],duplication RNF24 NA ESF1 NA NA NA NA NA NA +20:4015437 20:13783183 RNF24--ESF1 BS_PNYN0AYD ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr20:9.70Mb]],duplication RNF24 NA ESF1 NA NA NA NA NA NA +20:3963875 20:13787535 RNF24--NDUFAF5 BS_PNYN0AYD ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr20:9.77Mb]],duplication/5'-5' RNF24 NA NDUFAF5 NA NA NA NA NA NA +16:53610967 X:79390199 RPGRIP1L--AL009028.1(20034)/TBX22(624557) BS_PNYN0AYD ARRIBA frameshift 2 0 medium [],translocation RPGRIP1L NA AL009028.1 TBX22 NA NA NA Oncogene, TranscriptionFactor NA +7:35801270 7:37530573 SEPT7--ELMO1(81324)/NECAP1P1(54927) BS_PNYN0AYD ARRIBA frameshift 3 0 medium [],deletion SEPT7 NA ELMO1 NECAP1P1 NA Oncogene NA NA NA +X:19683823 18:75697611 SH3KBP1--LINC01898 BS_PNYN0AYD ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chrX--chr18]],translocation SH3KBP1 NA LINC01898 NA NA NA NA NA NA +X:19695612 18:75697611 SH3KBP1--LINC01898 BS_PNYN0AYD ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chrX--chr18]],translocation SH3KBP1 NA LINC01898 NA NA NA NA NA NA +X:19683823 18:75715566 SH3KBP1--LINC01898(3181)/AC021506.1(129359) BS_PNYN0AYD ARRIBA frameshift 20 2 high [],translocation SH3KBP1 NA LINC01898 AC021506.1 NA NA NA NA NA +17:59070823 17:57386377 TRIM37--MSI2 BS_PNYN0AYD ARRIBA frameshift 24 2 high [CCLE,INTRACHROMOSOMAL[chr17:1.30Mb]],deletion/5'-5' TRIM37 NA MSI2 NA Oncogene CosmicCensus, Oncogene NA NA TCGAFusion +18:76895285 20:28624414 ZNF236--FRG1CP(21750)/FRG1DP(455976) BS_PNYN0AYD ARRIBA frameshift 3 0 medium [],translocation ZNF236 NA FRG1CP FRG1DP TranscriptionFactor NA NA NA NA +20:25685567 16:69902868 ZNF337--WWP2 BS_PNYN0AYD ARRIBA frameshift 13 0 high [INTERCHROMOSOMAL[chr20--chr16]],translocation/5'-5' ZNF337 NA WWP2 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_PQ6QEVE8 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_PQ6QEVE8 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:29694850 2:28799199 ALK--PPP1CB BS_PQ6QEVE8 ARRIBA frameshift 291 33 high [INTRACHROMOSOMAL[chr2:0.39Mb]],inversion ALK NA PPP1CB NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +2:29717578 2:28799199 ALK--PPP1CB BS_PQ6QEVE8 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr2:0.39Mb]],inversion ALK NA PPP1CB NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +2:29694850 2:28799199 ALK--PPP1CB BS_PQ6QEVE8 STARFUSION frameshift 301 35 NA [INTRACHROMOSOMAL[chr2:0.39Mb]] ALK NA PPP1CB NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +2:29694850 2:28799199 ALK--SPDYA BS_PQ6QEVE8 ARRIBA frameshift 140 0 medium [INTRACHROMOSOMAL[chr2:0.34Mb]],inversion ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +2:29694850 2:28840172 ALK--SPDYA BS_PQ6QEVE8 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr2:0.34Mb]],inversion ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +2:29694850 2:28799199 ALK--SPDYA BS_PQ6QEVE8 STARFUSION other 301 32 NA [INTRACHROMOSOMAL[chr2:0.34Mb]] ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +19:44907827 14:49586583 APOE--AL139099.5 BS_PQ6QEVE8 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr19--chr14]] APOE NA AL139099.5 NA NA NA NA NA NA +19:44909281 14:49586762 APOE--RN7SL1 BS_PQ6QEVE8 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr19--chr14]] APOE NA RN7SL1 NA NA NA NA NA NA +19:44907827 14:49586583 APOE--RN7SL1 BS_PQ6QEVE8 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr19--chr14]] APOE NA RN7SL1 NA NA NA NA NA NA +17:7656768 14:49862815 ATP1B2--RN7SL2 BS_PQ6QEVE8 STARFUSION other 9 16 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_PQ6QEVE8 ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +2:28788728 2:29223634 PPP1CB--ALK BS_PQ6QEVE8 ARRIBA in-frame 138 12 high [INTRACHROMOSOMAL[chr2:0.39Mb]],inversion PPP1CB NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:28783978 2:29223528 PPP1CB--ALK BS_PQ6QEVE8 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr2:0.39Mb]],inversion PPP1CB NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:28788728 2:29223634 PPP1CB--ALK BS_PQ6QEVE8 STARFUSION other 144 12 NA [INTRACHROMOSOMAL[chr2:0.39Mb]] PPP1CB NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +14:49862561 14:20343396 RN7SL2--AL355075.4 BS_PQ6QEVE8 STARFUSION other 9 16 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862561 14:20343396 RN7SL2--RPPH1 BS_PQ6QEVE8 STARFUSION other 9 16 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_PQ6QEVE8 ARRIBA other 27 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:50536808 8:50502778 SNTG1--SNTG1 BS_PQ6QEVE8 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +2:28788728 2:29223634 SPDYA--ALK BS_PQ6QEVE8 ARRIBA other 129 12 high [INTRACHROMOSOMAL[chr2:0.34Mb]],inversion SPDYA NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:28783978 2:29223528 SPDYA--ALK BS_PQ6QEVE8 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr2:0.34Mb]],inversion SPDYA NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:28788728 2:29223634 SPDYA--ALK BS_PQ6QEVE8 STARFUSION other 144 12 NA [INTRACHROMOSOMAL[chr2:0.34Mb]] SPDYA NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_PQ7CQFYR ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_PQ7CQFYR ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_PQ7CQFYR ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_PQ7CQFYR ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_PQ7CQFYR ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_PQ7CQFYR ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_PQ7CQFYR ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_PQ7CQFYR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +7:140794308 7:138861456 BRAF--KIAA1549 BS_PQ7CQFYR ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr7:1.74Mb]],deletion BRAF NA KIAA1549 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus, Oncogene NA NA NA +7:140776912 7:138871362 BRAF--KIAA1549 BS_PQ7CQFYR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:1.74Mb]],deletion BRAF NA KIAA1549 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus, Oncogene NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_PQ7CQFYR ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_PQ7CQFYR ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_PQ7CQFYR ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_PQ7CQFYR ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_PQ7CQFYR ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_PQ7CQFYR ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_PQ7CQFYR ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_PQ7CQFYR ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_PQ7CQFYR ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211082898 KCNH1--AL590132.1 BS_PQ7CQFYR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_PQ7CQFYR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_PQ7CQFYR ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_PQ7CQFYR ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_PQ7CQFYR ARRIBA in-frame 2 0 low [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_PQ7CQFYR ARRIBA other 4 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_PQ7CQFYR ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_PQ7CQFYR ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:50502880 8:50438543 SNTG1--SNTG1 BS_PQ7CQFYR ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_PQVTB6BB ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_PQVTB6BB ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_PQVTB6BB ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_PRAEF32W ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_PRAEF32W ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_PRAEF32W ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +22:29287134 11:128805366 EWSR1--FLI1 BS_PSNBFWQV ARRIBA in-frame 18 1 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +22:29287134 11:128805366 EWSR1--FLI1 BS_PSNBFWQV STARFUSION in-frame 19 1 NA [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]] EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_PSW27ZTE ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_PSW27ZTE ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_PSW27ZTE ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_PSW27ZTE STARFUSION other 14 0 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +8:89418044 8:89725641 KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_PSW27ZTE ARRIBA other 2 1 high [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_PSW27ZTE ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_PZVHMSYN ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_PZVHMSYN ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:60442278 1:60600250 AC097066.1(292599)/LINC01748(73438)--LINC01748 BS_PZVHMSYN ARRIBA other 2 0 high [],duplication AC097066.1 LINC01748 LINC01748 NA NA NA NA NA NA +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_PZVHMSYN ARRIBA frameshift 1 0 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +8:68583044 8:68439499 C8orf34--C8orf34 BS_PZVHMSYN ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.49Mb]],duplication C8orf34 NA C8orf34 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_PZVHMSYN ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +18:61507560 18:61500383 CDH20--CDH20 BS_PZVHMSYN ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.22Mb]],duplication/non-canonical_splicing CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA +16:3810603 16:18819654 CREBBP--SMG1 BS_PZVHMSYN ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr16:14.92Mb]],duplication CREBBP NA SMG1 NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, Kinase NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_PZVHMSYN ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_PZVHMSYN ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +4:161455004 4:161500134 FSTL5--FSTL5 BS_PZVHMSYN ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_PZVHMSYN ARRIBA other 15 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178801793 3:178921943 KCNMB2-AS1--KCNMB2-AS1(61538)/ZMAT3(95280) BS_PZVHMSYN ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_PZVHMSYN ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_PZVHMSYN ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:50553179 8:50530177 SNTG1--SNTG1 BS_PZVHMSYN ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +8:52116275 8:52172583 ST18--ST18 BS_PZVHMSYN ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +2:43397971 2:43527988 THADA--THADA BS_PZVHMSYN ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.37Mb]],duplication/non-canonical_splicing THADA NA THADA NA Oncogene Oncogene NA NA NA +3:167554683 3:167664448 WDR49--WDR49(10465)/PDCD10(18850) BS_PZVHMSYN ARRIBA frameshift 1 1 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +X:24152830 X:23935196 ZFX--CXorf58 BS_PZVHMSYN ARRIBA other 6 0 high [INTRACHROMOSOMAL[chrX:0.21Mb]],duplication ZFX NA CXorf58 NA TranscriptionFactor NA NA NA NA +X:24149794 X:23935196 ZFX--CXorf58 BS_PZVHMSYN ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chrX:0.21Mb]],duplication ZFX NA CXorf58 NA TranscriptionFactor NA NA NA NA +19:36589615 19:46003008 ZNF529--CCDC61 BS_Q13FQ8FV ARRIBA other 2 0 high [INTRACHROMOSOMAL[chr19:9.39Mb]],inversion ZNF529 NA CCDC61 NA TranscriptionFactor NA NA NA NA +19:36589615 19:46006559 ZNF529--CCDC61 BS_Q13FQ8FV ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr19:9.39Mb]],inversion ZNF529 NA CCDC61 NA TranscriptionFactor NA NA NA NA +6:64590223 6:64593309 EYS--EYS BS_Q2T9ZRM0 ARRIBA frameshift 11 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +17:51041501 22:23745219 SPAG9--ZNF70 BS_Q2T9ZRM0 ARRIBA frameshift 23 0 high [INTERCHROMOSOMAL[chr17--chr22]],translocation SPAG9 NA ZNF70 NA NA TranscriptionFactor NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_Q2T9ZRM0 ARRIBA other 2 0 medium [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_Q3TBCK4V ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_Q3TBCK4V ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_Q3TBCK4V ARRIBA in-frame 8 3 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_Q3TBCK4V ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_Q3TBCK4V ARRIBA other 10 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_Q3TBCK4V ARRIBA in-frame 2 0 low [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +19:808762 19:784815 PTBP1--LINC01836 BS_Q3TBCK4V ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr19:0.01Mb],LOCAL_REARRANGEMENT:+:[11995]],duplication PTBP1 NA LINC01836 NA Oncogene NA NA NA NA +17:319420 17:404592 RPH3AL--AC141424.1 BS_Q3TBCK4V ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[18214]],duplication RPH3AL NA AC141424.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_Q3TBCK4V ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995911 14:49862666 7SK--RN7SL2 BS_Q5WZYWCT STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995863 14:49862664 7SK--RN7SL2 BS_Q5WZYWCT STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995910 14:49862709 7SK--RN7SL2 BS_Q5WZYWCT STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +19:1321456 19:1323672 AC005330.1--AC005330.1(826)/MUM1(31039) BS_Q5WZYWCT ARRIBA other 5 2 medium [],duplication AC005330.1 NA AC005330.1 MUM1 NA NA NA NA NA +7:19405370 7:19299328 AC007091.1--AC003986.1(153075)/AC007091.1(54206) BS_Q5WZYWCT ARRIBA other 3 0 medium [],duplication AC007091.1 NA AC003986.1 AC007091.1 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_Q5WZYWCT ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_Q5WZYWCT ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:199101596 2:198579708 AC020718.1(29805)/AC018717.1(6988)--AC019330.1 BS_Q5WZYWCT ARRIBA other 3 0 medium [],deletion AC020718.1 AC018717.1 AC019330.1 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_Q5WZYWCT ARRIBA other 5 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +4:16426440 4:16238771 AC097515.1--TAPT1-AS1 BS_Q5WZYWCT ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16288884 AC097515.1--TAPT1-AS1 BS_Q5WZYWCT ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16320065 AC097515.1--TAPT1-AS1 BS_Q5WZYWCT ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_Q5WZYWCT ARRIBA other 2 2 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +6:135810770 6:135659980 AL133319.1(2304)/PDE7B(40926)--LINC00271 BS_Q5WZYWCT ARRIBA other 2 2 medium [],duplication AL133319.1 PDE7B LINC00271 NA NA NA NA NA NA +3:57357176 3:57363786 DNAH12--DNAH12 BS_Q5WZYWCT ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +5:3531753 5:3566558 LINC01019--LINC01019(30464)/IRX1(29496) BS_Q5WZYWCT ARRIBA other 3 0 high [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA +15:75943572 15:76011286 NRG4--NRG4 BS_Q5WZYWCT ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +12:95710441 12:95833084 NTN4--AC090001.1 BS_Q5WZYWCT ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_Q5WZYWCT ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_Q5WZYWCT ARRIBA other 4 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_Q5WZYWCT ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_Q79NP5YY ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_Q79NP5YY ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:47576973 4:47554726 ATP10D--ATP10D BS_Q79NP5YY ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.11Mb]],duplication/non-canonical_splicing ATP10D NA ATP10D NA NA NA NA NA NA +17:7656768 14:49862815 ATP1B2--RN7SL2 BS_Q79NP5YY STARFUSION other 11 4 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_Q79NP5YY ARRIBA in-frame 8 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_Q79NP5YY ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:91242332 12:90905864 AC007115.1(48390)/AC025035.1(119864)--CCER1 BS_Q9V7A95C ARRIBA other 23 0 medium [],inversion AC007115.1 AC025035.1 CCER1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_Q9V7A95C ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_Q9V7A95C ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +12:89989289 12:91315456 AC084200.1--AC007115.1(121514)/AC025035.1(46740) BS_Q9V7A95C ARRIBA other 5 0 medium [],deletion AC084200.1 NA AC007115.1 AC025035.1 NA NA NA NA NA +2:24828217 2:222769254 ADCY3--AC016712.1(42420)/ACSL3(91680) BS_Q9V7A95C ARRIBA other 20 0 medium [],inversion ADCY3 NA AC016712.1 ACSL3 NA NA NA CosmicCensus, Oncogene NA +12:89708596 12:91242196 ATP2B1--AC007115.1(48254)/AC025035.1(120000) BS_Q9V7A95C ARRIBA other 59 3 high [],inversion ATP2B1 NA AC007115.1 AC025035.1 NA NA NA NA NA +12:89708596 12:90806791 ATP2B1--AC084365.1(183969)/AC112481.1(2485) BS_Q9V7A95C ARRIBA other 4 1 medium [],duplication ATP2B1 NA AC084365.1 AC112481.1 NA NA NA NA NA +12:89708596 12:90905864 ATP2B1--CCER1 BS_Q9V7A95C ARRIBA other 21 1 medium [INTRACHROMOSOMAL[chr12:1.20Mb]],duplication ATP2B1 NA CCER1 NA NA NA NA NA NA +12:89709219 12:90905864 ATP2B1--CCER1 BS_Q9V7A95C ARRIBA other 10 0 medium [INTRACHROMOSOMAL[chr12:1.20Mb]],duplication ATP2B1 NA CCER1 NA NA NA NA NA NA +12:89708596 12:90905864 ATP2B1--CCER1 BS_Q9V7A95C STARFUSION other 21 1 NA [INTRACHROMOSOMAL[chr12:1.20Mb]] ATP2B1 NA CCER1 NA NA NA NA NA NA +12:89708596 12:91169765 ATP2B1--DCN BS_Q9V7A95C ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr12:1.43Mb]],inversion/5'-5' ATP2B1 NA DCN NA NA TumorSuppressorGene NA NA NA +12:89708596 12:91192645 ATP2B1--DCN(9522)/AC007115.1(1064) BS_Q9V7A95C ARRIBA other 278 18 high [],inversion ATP2B1 NA DCN AC007115.1 NA TumorSuppressorGene NA NA NA +12:89709219 12:91192645 ATP2B1-AS1--DCN(9522)/AC007115.1(1064) BS_Q9V7A95C ARRIBA other 10 0 medium [],inversion ATP2B1-AS1 NA DCN AC007115.1 NA TumorSuppressorGene NA NA NA +12:69262562 12:67678589 CPSF6--AC078777.1(7670)/LINC02421(30458) BS_Q9V7A95C ARRIBA frameshift 4 2 medium [],duplication CPSF6 NA AC078777.1 LINC02421 NA NA NA NA NA +12:69262562 12:91042318 CPSF6--EPYC(37292)/KERA(8173) BS_Q9V7A95C ARRIBA frameshift 9 5 medium [],deletion CPSF6 NA EPYC KERA NA NA NA NA NA +12:69262562 12:70242893 CPSF6--LINC01481 BS_Q9V7A95C ARRIBA frameshift 153 14 medium [INTRACHROMOSOMAL[chr12:0.63Mb]],inversion CPSF6 NA LINC01481 NA NA NA NA NA NA +12:69262562 12:70242893 CPSF6--LINC01481 BS_Q9V7A95C STARFUSION other 157 14 NA [INTRACHROMOSOMAL[chr12:0.63Mb]] CPSF6 NA LINC01481 NA NA NA NA NA NA +12:69262562 14:100935772 CPSF6--MEG8 BS_Q9V7A95C ARRIBA frameshift 5 1 medium [INTERCHROMOSOMAL[chr12--chr14]],translocation CPSF6 NA MEG8 NA NA NA NA NA NA +12:69262562 14:100967639 CPSF6--MEG8 BS_Q9V7A95C ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr14]],translocation CPSF6 NA MEG8 NA NA NA NA NA NA +12:91193221 12:90905864 DCN(10098)/AC007115.1(488)--CCER1 BS_Q9V7A95C ARRIBA other 29 4 high [],inversion DCN AC007115.1 CCER1 NA TumorSuppressorGene NA NA NA NA +15:51507134 15:51542507 DMXL2--DMXL2 BS_Q9V7A95C ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.18Mb]],duplication/non-canonical_splicing DMXL2 NA DMXL2 NA NA NA NA NA NA +12:89351640 12:67678863 DUSP6--AC078777.1(7944)/LINC02421(30184) BS_Q9V7A95C ARRIBA frameshift 52 2 medium [],inversion DUSP6 NA AC078777.1 LINC02421 TumorSuppressorGene NA NA NA NA +12:67649945 12:68486727 DYRK2--AC008033.1(11825)/AC008033.2(960) BS_Q9V7A95C ARRIBA frameshift 3 0 medium [],inversion DYRK2 NA AC008033.1 AC008033.2 Kinase, Kinase NA NA NA NA +12:67649945 12:68451552 DYRK2--LINC02384 BS_Q9V7A95C ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr12:0.67Mb]],inversion DYRK2 NA LINC02384 NA Kinase, Kinase NA NA NA NA +12:67649945 12:68442141 DYRK2--LINC02384 BS_Q9V7A95C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.67Mb]],inversion DYRK2 NA LINC02384 NA Kinase, Kinase NA NA NA NA +12:67649182 12:68442141 DYRK2--LINC02384 BS_Q9V7A95C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.67Mb]],inversion DYRK2 NA LINC02384 NA Kinase, Kinase NA NA NA NA +12:67649945 12:68333664 DYRK2--LINC02384 BS_Q9V7A95C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.67Mb]],inversion DYRK2 NA LINC02384 NA Kinase, Kinase NA NA NA NA +12:67649945 12:68607129 DYRK2--Metazoa_SRP(30993)/RAP1B(3710) BS_Q9V7A95C ARRIBA frameshift 7 0 medium [],inversion DYRK2 NA Metazoa_SRP RAP1B Kinase, Kinase NA NA Oncogene NA +12:68006146 12:91948811 IFNG-AS1--AC090049.1(42624)/LINC01619(36165) BS_Q9V7A95C ARRIBA other 3 0 high [],deletion IFNG-AS1 NA AC090049.1 LINC01619 NA NA NA NA NA +12:70434266 12:91002578 KCNMB4--EPYC BS_Q9V7A95C ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr12:20.53Mb]],inversion KCNMB4 NA EPYC NA NA NA NA NA NA +2:241882635 2:226980183 LINC01237--RHBDD1 BS_Q9V7A95C ARRIBA other 9 1 high [INTRACHROMOSOMAL[chr2:14.88Mb]],inversion/3'-3' LINC01237 NA RHBDD1 NA NA NA NA NA NA +12:70242797 12:91814926 LINC01481--AC025254.1(134053)/AC090049.2(56196) BS_Q9V7A95C ARRIBA other 2 1 medium [],inversion LINC01481 NA AC025254.1 AC090049.2 NA NA NA NA NA +12:70242797 12:69251129 LINC01481--CPSF6 BS_Q9V7A95C ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr12:0.63Mb]],inversion LINC01481 NA CPSF6 NA NA NA NA NA NA +12:90593811 12:69755384 LINC02392(293471)/AC084365.1(23948)--RAB3IP BS_Q9V7A95C ARRIBA other 10 0 medium [],duplication LINC02392 AC084365.1 RAB3IP NA NA NA NA NA NA +12:92467002 12:91506881 LINC02397--AC025035.1(138275)/DLEU2_6(126031) BS_Q9V7A95C ARRIBA other 8 0 medium [],inversion LINC02397 NA AC025035.1 DLEU2_6 NA NA NA NA NA +2:24707888 4:56966656 NCOA1--NOA1 BS_Q9V7A95C ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr2--chr4]],translocation/5'-5' NCOA1 NA NOA1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +2:24707888 4:56966656 NCOA1--REST BS_Q9V7A95C ARRIBA frameshift 18 0 high [INTERCHROMOSOMAL[chr2--chr4]],translocation NCOA1 NA REST NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA +2:24707888 4:56966656 NCOA1--REST BS_Q9V7A95C STARFUSION frameshift 22 0 NA [INTERCHROMOSOMAL[chr2--chr4]] NCOA1 NA REST NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA +4:56966796 2:24643966 NOA1--NCOA1 BS_Q9V7A95C ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr4--chr2]],translocation/3'-3' NOA1 NA NCOA1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +2:222220140 2:24710931 PAX3--NCOA1 BS_Q9V7A95C ARRIBA in-frame 78 11 high [Cosmic,ChimerPub,ChimerSeq,ChimerKB,chimerdb_pubmed,INTRACHROMOSOMAL[chr2:197.43Mb]],inversion PAX3 NA NCOA1 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +2:222220140 2:24710931 PAX3--NCOA1 BS_Q9V7A95C STARFUSION in-frame 80 11 NA [Cosmic,ChimerPub,ChimerSeq,ChimerKB,chimerdb_pubmed,INTRACHROMOSOMAL[chr2:197.43Mb]] PAX3 NA NCOA1 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +12:69756663 12:90593569 RAB3IP--LINC02392(293229)/AC084365.1(24190) BS_Q9V7A95C ARRIBA frameshift 45 1 high [],deletion RAB3IP NA LINC02392 AC084365.1 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_Q9V7A95C ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QAG1RDXN ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QAG1RDXN ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +12:32337706 12:32293994 BICD1--BICD1 BS_QAG1RDXN ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing BICD1 NA BICD1 NA NA NA NA NA NA +12:122288489 6:117320030 CLIP1--ROS1 BS_QAG1RDXN ARRIBA in-frame 22 2 high [ChimerKB,Cosmic,INTERCHROMOSOMAL[chr12--chr6]],translocation CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA +12:122288489 6:117320030 CLIP1--ROS1 BS_QAG1RDXN STARFUSION in-frame 24 3 NA [ChimerKB,Cosmic,INTERCHROMOSOMAL[chr12--chr6]] CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA +6:114469299 6:114371592 HDAC2-AS2--HDAC2-AS2 BS_QAG1RDXN ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA +2:149486345 2:149437638 LYPD6(12197)/MMADHC(83289)--LYPD6 BS_QAG1RDXN ARRIBA other 4 0 medium [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_QAG1RDXN ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QAG1RDXN ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QB7YGKN1 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QB7YGKN1 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:129679928 8:129102389 AC103718.1--LINC00976(136388)/LINC00977(114078) BS_QB7YGKN1 ARRIBA other 3 0 high [],deletion AC103718.1 NA LINC00976 LINC00977 NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_QB7YGKN1 ARRIBA other 14 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +5:90985522 5:90763305 ADGRV1--ADGRV1 BS_QB7YGKN1 ARRIBA frameshift 2 2 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +1:171247581 1:170807604 AL445673.1--PRRX1(68185)/MROH9(127867) BS_QB7YGKN1 ARRIBA other 1 2 medium [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_QB7YGKN1 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_QB7YGKN1 ARRIBA other 19 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_QB7YGKN1 ARRIBA in-frame 4 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +5:112262494 5:22033667 EPB41L4A--CDH12 BS_QB7YGKN1 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr5:89.29Mb]],inversion/5'-5' EPB41L4A NA CDH12 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_QB7YGKN1 ARRIBA other 14 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +7:108159463 16:24112973 NRCAM--PRKCB BS_QB7YGKN1 ARRIBA frameshift 570 170 high [INTERCHROMOSOMAL[chr7--chr16]],translocation NRCAM NA PRKCB NA TumorSuppressorGene, Oncogene TumorSuppressorGene, CosmicCensus, Kinase NA NA NA +7:108189645 16:24112973 NRCAM--PRKCB BS_QB7YGKN1 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr7--chr16]],translocation NRCAM NA PRKCB NA TumorSuppressorGene, Oncogene TumorSuppressorGene, CosmicCensus, Kinase NA NA NA +7:108180223 16:24214658 NRCAM--PRKCB BS_QB7YGKN1 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr7--chr16]],translocation NRCAM NA PRKCB NA TumorSuppressorGene, Oncogene TumorSuppressorGene, CosmicCensus, Kinase NA NA NA +7:108159463 16:24112973 NRCAM--PRKCB BS_QB7YGKN1 STARFUSION in-frame 1214 232 NA [INTERCHROMOSOMAL[chr7--chr16]] NRCAM NA PRKCB NA TumorSuppressorGene, Oncogene TumorSuppressorGene, CosmicCensus, Kinase NA NA NA +16:24123981 7:108160492 PRKCB--NRCAM BS_QB7YGKN1 ARRIBA frameshift 161 37 high [INTERCHROMOSOMAL[chr16--chr7]],translocation PRKCB NA NRCAM NA TumorSuppressorGene, CosmicCensus, Kinase TumorSuppressorGene, Oncogene NA NA NA +16:24094297 7:108150147 PRKCB--NRCAM BS_QB7YGKN1 ARRIBA in-frame 11 2 medium [INTERCHROMOSOMAL[chr16--chr7]],translocation PRKCB NA NRCAM NA TumorSuppressorGene, CosmicCensus, Kinase TumorSuppressorGene, Oncogene NA NA NA +16:24113069 7:108184614 PRKCB--NRCAM BS_QB7YGKN1 ARRIBA frameshift 3 2 medium [INTERCHROMOSOMAL[chr16--chr7]],translocation PRKCB NA NRCAM NA TumorSuppressorGene, CosmicCensus, Kinase TumorSuppressorGene, Oncogene NA NA NA +16:24113069 7:108160492 PRKCB--NRCAM BS_QB7YGKN1 ARRIBA frameshift 1 2 medium [INTERCHROMOSOMAL[chr16--chr7]],translocation PRKCB NA NRCAM NA TumorSuppressorGene, CosmicCensus, Kinase TumorSuppressorGene, Oncogene NA NA NA +16:24123981 7:108160492 PRKCB--NRCAM BS_QB7YGKN1 STARFUSION frameshift 178 65 NA [INTERCHROMOSOMAL[chr16--chr7]] PRKCB NA NRCAM NA TumorSuppressorGene, CosmicCensus, Kinase TumorSuppressorGene, Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QB7YGKN1 ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_QB7YGKN1 ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QB84TBA3 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QB84TBA3 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:113759320 4:52458948 CAMK2D--AC097522.1(17413)/RNU6-1252P(35901) BS_QB84TBA3 ARRIBA frameshift 5 0 medium [],inversion CAMK2D NA AC097522.1 RNU6-1252P Kinase, Oncogene, Kinase NA NA NA NA +14:26595410 14:100937403 NOVA1--AL117190.1 BS_QB84TBA3 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr14:74.24Mb]],inversion NOVA1 NA AL117190.1 NA NA NA NA NA NA +14:26595410 14:100937403 NOVA1--MEG8 BS_QB84TBA3 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr14:74.30Mb]],inversion NOVA1 NA MEG8 NA NA NA NA NA NA +13:67225405 4:152411872 PCDH9--FBXW7 BS_QB84TBA3 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr13--chr4]],translocation PCDH9 NA FBXW7 NA TumorSuppressorGene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QB84TBA3 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:52027968 4:54596766 SGCB--AC098868.1(150043)/LINC02260(6445) BS_QB84TBA3 ARRIBA frameshift 8 1 high [],duplication SGCB NA AC098868.1 LINC02260 NA NA NA NA NA +9:100352772 7:83490274 TEX10--SEMA3E BS_QB84TBA3 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr9--chr7]],translocation TEX10 NA SEMA3E NA NA NA NA NA NA +12:50780238 22:29296239 ATF1--EWSR1 BS_QBR4WCQ2 ARRIBA in-frame 15 0 high [ChimerPub,ChimerKB,INTERCHROMOSOMAL[chr12--chr22]],translocation ATF1 NA EWSR1 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA +12:50780238 22:29296239 ATF1--EWSR1 BS_QBR4WCQ2 STARFUSION in-frame 17 0 NA [ChimerPub,ChimerKB,INTERCHROMOSOMAL[chr12--chr22]] ATF1 NA EWSR1 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA +22:29291173 12:50806312 EWSR1--AC013244.2 BS_QBR4WCQ2 ARRIBA other 5 0 low [INTERCHROMOSOMAL[chr22--chr12]],translocation/5'-5' EWSR1 NA AC013244.2 NA CosmicCensus, Oncogene NA NA NA NA +22:29288786 12:50809456 EWSR1--ATF1 BS_QBR4WCQ2 ARRIBA in-frame 3 0 medium [ChimerSeq,ChimerKB,Cosmic,Mitelman,ChimerPub,INTERCHROMOSOMAL[chr22--chr12]],translocation EWSR1 NA ATF1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +8:122670360 8:122487466 LINC01151--AC108136.1 BS_QBR4WCQ2 STARFUSION other 6 1 NA [INTRACHROMOSOMAL[chr8:0.18Mb]] LINC01151 NA AC108136.1 NA NA NA NA NA NA +8:122670360 8:122417022 LINC01151--SMILR BS_QBR4WCQ2 STARFUSION other 24 3 NA [FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.24Mb]] LINC01151 NA SMILR NA NA NA NA NA NA +9:35657755 15:72207276 RMRP--PKM BS_QBR4WCQ2 ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr9--chr15]],translocation RMRP NA PKM NA Oncogene Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QC3XCE6X ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QC3XCE6X ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_QC3XCE6X ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_QC3XCE6X ARRIBA other 2 1 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +1:106048346 1:106041567 AL355306.2--AL355306.2 BS_QC3XCE6X ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.17Mb]],duplication/non-canonical_splicing AL355306.2 NA AL355306.2 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_QC3XCE6X ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_QC3XCE6X ARRIBA frameshift 8 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_QC3XCE6X ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_QC3XCE6X ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_QC3XCE6X ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_QC3XCE6X ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_QC3XCE6X ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +10:12998338 10:13074100 CCDC3--CCDC3 BS_QC3XCE6X ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_QC3XCE6X ARRIBA in-frame 6 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_QC3XCE6X ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +12:32701562 12:32625654 DNM1L--FGD4 BS_QC3XCE6X ARRIBA frameshift 4 0 medium [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[33150]],duplication DNM1L NA FGD4 NA NA NA NA NA NA +14:89870643 14:89932627 EFCAB11--EFCAB11 BS_QC3XCE6X ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_QC3XCE6X ARRIBA in-frame 37 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_QC3XCE6X ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +7:127242695 7:127248323 GRM8--GRM8 BS_QC3XCE6X ARRIBA frameshift 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication GRM8 NA GRM8 NA NA NA NA NA NA +16:27807487 16:27828956 GSG1L--GSG1L BS_QC3XCE6X ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.28Mb]],duplication/non-canonical_splicing GSG1L NA GSG1L NA NA NA NA NA NA +7:43501322 7:43468920 HECW1--HECW1 BS_QC3XCE6X ARRIBA frameshift 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_QC3XCE6X ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_QC3XCE6X ARRIBA frameshift 8 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_QC3XCE6X ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_QC3XCE6X ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_QC3XCE6X ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_QC3XCE6X ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_QC3XCE6X ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_QC3XCE6X ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_QC3XCE6X ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_QC3XCE6X ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_QC3XCE6X ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_QC3XCE6X ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_QC3XCE6X ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_QC3XCE6X ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_QC3XCE6X ARRIBA frameshift 16 5 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_QC3XCE6X ARRIBA other 3 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_QC3XCE6X ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +15:73178427 13:85877022 NEO1--AL162373.1(39490)/MOB1AP1(91977) BS_QC3XCE6X ARRIBA frameshift 3 0 medium [],translocation NEO1 NA AL162373.1 MOB1AP1 NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_QC3XCE6X ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +6:165379194 6:165388453 PDE10A--PDE10A BS_QC3XCE6X ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_QC3XCE6X ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +7:39086031 7:38986246 POU6F2--POU6F2 BS_QC3XCE6X ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +1:13782831 1:13769039 PRDM2--PRDM2 BS_QC3XCE6X ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QC3XCE6X ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:158617205 4:158607972 RXFP1--RXFP1 BS_QC3XCE6X ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA +12:21292164 12:21306988 SLCO1A2--SLCO1A2 BS_QC3XCE6X ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA +1:179088089 1:184598401 TOR3A--C1orf21 BS_QC3XCE6X ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:5.29Mb]],deletion TOR3A NA C1orf21 NA NA NA NA NA NA +7:19609322 7:19576287 AC007091.1(30716)/TWISTNB(86140)--AC007091.1 BS_QEYPFYHD ARRIBA other 26 1 high [],duplication AC007091.1 TWISTNB AC007091.1 NA NA NA NA NA NA +7:19609322 7:19576287 AC007091.1(30716)/TWISTNB(86140)--AC007091.1 BS_QEYPFYHD ARRIBA other 12 1 high [],duplication AC007091.1 TWISTNB AC007091.1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QEYPFYHD ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QEYPFYHD ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:155503021 7:155509097 AC009403.2--AC009403.2 BS_QEYPFYHD ARRIBA other 23 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA +5:135637709 5:135629237 AC034206.1(2835)/LINC01959(10875)--AC034206.1 BS_QEYPFYHD ARRIBA other 2 0 low [],duplication AC034206.1 LINC01959 AC034206.1 NA NA NA NA NA NA +3:117997182 3:117344545 AC092691.1--LSAMP(205156)/RNU6-1200P(199660) BS_QEYPFYHD ARRIBA other 1 0 low [],deletion AC092691.1 NA LSAMP RNU6-1200P NA TumorSuppressorGene NA NA NA +11:108148858 11:108133820 ACAT1(1082)/NPAT(8357)--ACAT1 BS_QEYPFYHD ARRIBA other 1 0 low [],duplication ACAT1 NPAT ACAT1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_QEYPFYHD ARRIBA other 7 1 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +10:4949861 10:4830675 AKR1C6P(57886)/U8(12575)--AKR1E2 BS_QEYPFYHD ARRIBA other 1 4 medium [],duplication AKR1C6P U8 AKR1E2 NA NA NA NA NA NA +22:32273507 22:32265431 AL008723.1--SLC5A4-AS1 BS_QEYPFYHD ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]],duplication AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_QEYPFYHD ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46485529 20:46506458 AL031686.1--ZNF334 BS_QEYPFYHD ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46496711 20:46504740 AL031686.1--ZNF334 BS_QEYPFYHD ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46485529 20:46504740 AL031686.1--ZNF334 BS_QEYPFYHD ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +1:46080642 1:46303368 AL358075.4--LRRC41 BS_QEYPFYHD ARRIBA in-frame 13 3 high [INTRACHROMOSOMAL[chr1:0.08Mb],LOCAL_REARRANGEMENT:-:[84708]],duplication AL358075.4 NA LRRC41 NA NA NA NA NA NA +1:46080642 1:46298370 AL358075.4--LRRC41 BS_QEYPFYHD ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.08Mb],LOCAL_REARRANGEMENT:-:[84708]],duplication AL358075.4 NA LRRC41 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--AL390726.6 BS_QEYPFYHD ARRIBA other 4 3 medium [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication AL390726.6 NA AL390726.6 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_QEYPFYHD ARRIBA other 14 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +9:2904777 9:2948282 ATP5HP2(3973)/CARM1P1(2296)--CARM1P1 BS_QEYPFYHD ARRIBA other 4 0 low [],duplication ATP5HP2 CARM1P1 CARM1P1 NA NA NA NA NA NA +7:107613432 7:107564588 BCAP29--DUS4L BS_QEYPFYHD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_REARRANGEMENT:+:[1513]],duplication BCAP29 NA DUS4L NA NA NA NA NA NA +7:107583982 7:107575188 BCAP29--DUS4L BS_QEYPFYHD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_REARRANGEMENT:+:[1513]],duplication BCAP29 NA DUS4L NA NA NA NA NA NA +7:107613432 7:107575188 BCAP29--DUS4L BS_QEYPFYHD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_REARRANGEMENT:+:[1513]],duplication BCAP29 NA DUS4L NA NA NA NA NA NA +7:107596002 7:107567050 BCAP29--DUS4L BS_QEYPFYHD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_REARRANGEMENT:+:[1513]],duplication BCAP29 NA DUS4L NA NA NA NA NA NA +7:107596002 7:107576366 BCAP29--DUS4L BS_QEYPFYHD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_REARRANGEMENT:+:[1513]],duplication BCAP29 NA DUS4L NA NA NA NA NA NA +5:34108948 5:34182867 C1QTNF3-AMACR--AC138409.2 BS_QEYPFYHD ARRIBA frameshift 2 1 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_REARRANGEMENT:-:[40170]],duplication C1QTNF3-AMACR NA AC138409.2 NA NA NA NA NA NA +5:34157535 5:34182867 C1QTNF3-AMACR(33007)/AC139792.1(586)--AC138409.2 BS_QEYPFYHD ARRIBA other 1 0 low [],duplication C1QTNF3-AMACR AC139792.1 AC138409.2 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_QEYPFYHD ARRIBA frameshift 32 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +7:81961894 7:82600822 CACNA2D1--MTHFD2P5(10131)/AC004006.1(56213) BS_QEYPFYHD ARRIBA frameshift 5 0 medium [],duplication CACNA2D1 NA MTHFD2P5 AC004006.1 NA NA NA NA NA +6:22400643 6:22349229 CASC15(32315)/HDGFL1(168850)--CASC15 BS_QEYPFYHD ARRIBA other 15 0 high [],duplication CASC15 HDGFL1 CASC15 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_QEYPFYHD ARRIBA in-frame 15 2 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_QEYPFYHD ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_QEYPFYHD ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100547744 CAVIN4--MSANTD3-TMEFF1 BS_QEYPFYHD ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_QEYPFYHD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_QEYPFYHD ARRIBA in-frame 15 2 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_QEYPFYHD ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_QEYPFYHD ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100547744 CAVIN4--TMEFF1 BS_QEYPFYHD ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_QEYPFYHD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_QEYPFYHD ARRIBA other 11 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_QEYPFYHD ARRIBA frameshift 42 5 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_QEYPFYHD ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_QEYPFYHD ARRIBA other 3 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +14:59458857 14:59551436 GPR135--CCDC175 BS_QEYPFYHD ARRIBA other 3 0 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59543454 GPR135--CCDC175 BS_QEYPFYHD ARRIBA other 3 0 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59540746 GPR135--CCDC175 BS_QEYPFYHD ARRIBA other 2 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_QEYPFYHD ARRIBA frameshift 9 2 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_QEYPFYHD ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_QEYPFYHD ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +8:43180201 5:79130933 HGSNAT--BHMT BS_QEYPFYHD ARRIBA other 2 1 high [INTERCHROMOSOMAL[chr8--chr5]],translocation/3'-3' HGSNAT NA BHMT NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_QEYPFYHD ARRIBA frameshift 139 15 high [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_QEYPFYHD ARRIBA frameshift 30 4 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_QEYPFYHD ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_QEYPFYHD ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_QEYPFYHD ARRIBA frameshift 10 1 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +11:1599051 11:71564779 KRTAP5-AS1--KRTAP5-9(15226)/KRTAP5-10(784) BS_QEYPFYHD ARRIBA other 1 2 medium [],inversion KRTAP5-AS1 NA KRTAP5-9 KRTAP5-10 NA NA NA NA NA +17:21091179 17:21090268 LINC01563(564)/DHRS7B(32185)--LINC01563 BS_QEYPFYHD ARRIBA other 11 1 low [],duplication LINC01563 DHRS7B LINC01563 NA NA NA NA NA NA +4:32158081 4:32146053 LINC02506(2675)/LINC02353(192957)--LINC02506 BS_QEYPFYHD ARRIBA other 21 1 low [],duplication LINC02506 LINC02353 LINC02506 NA NA NA NA NA NA +20:46474501 20:46504740 MKRN7P--ZNF334 BS_QEYPFYHD ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA +8:124555742 8:124558832 MTSS1--MTSS1 BS_QEYPFYHD ARRIBA frameshift 44 6 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_QEYPFYHD ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +3:52634758 3:140258853 PBRM1--CLSTN2 BS_QEYPFYHD ARRIBA frameshift 9 0 low [INTRACHROMOSOMAL[chr3:87.25Mb]],duplication/5'-5' PBRM1 NA CLSTN2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +1:46080642 1:46303368 PIK3R3--LRRC41 BS_QEYPFYHD ARRIBA in-frame 13 4 high [ChimerSeq,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication PIK3R3 NA LRRC41 NA NA NA NA NA TCGAFusion +1:46080642 1:46298370 PIK3R3--LRRC41 BS_QEYPFYHD ARRIBA frameshift 2 1 medium [ChimerSeq,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication PIK3R3 NA LRRC41 NA NA NA NA NA TCGAFusion +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_QEYPFYHD ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +18:9862247 3:106112681 RAB31--CBLB(243129)/AC079382.1(213056) BS_QEYPFYHD ARRIBA other 3 0 medium [],translocation RAB31 NA CBLB AC079382.1 NA CosmicCensus, Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QEYPFYHD ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:111451122 12:111554217 SH2B3--ATXN2 BS_QEYPFYHD ARRIBA other 1 0 low [ChimerSeq,ChimerPub,INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[591]],duplication/3'-3' SH2B3 NA ATXN2 NA TumorSuppressorGene, CosmicCensus NA NA NA TCGAFusion +8:52116275 8:52172583 ST18--ST18 BS_QEYPFYHD ARRIBA frameshift 27 6 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +6:10898115 6:10893867 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 14 3 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10942746 6:10912673 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 12 3 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10912927 6:10907542 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 9 0 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10956242 6:10898824 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 1 5 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10963843 6:10907542 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 1 5 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10956242 6:10907542 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 2 4 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10956242 6:10902677 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 1 4 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10958875 6:10907542 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 1 4 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10958875 6:10912673 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 1 3 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10942746 6:10910148 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 1 3 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10926432 6:10907542 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 3 0 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10907684 6:10902677 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 2 0 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10902963 6:10893867 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 2 0 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10930514 6:10910148 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 2 0 medium [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10935187 6:10924496 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA in-frame 2 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10912927 6:10906020 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 2 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10931489 6:10912673 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 1 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10935187 6:10898824 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 1 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10926432 6:10898824 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 1 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10898848 6:10891513 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA in-frame 1 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10935187 6:10910148 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 1 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10930514 6:10912673 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 1 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10898115 6:10891513 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 1 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +6:10912927 6:10912673 SYCP2L--AL024498.2 BS_QEYPFYHD ARRIBA frameshift 1 0 low [],duplication SYCP2L NA AL024498.2 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_QEYPFYHD ARRIBA other 14 2 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +11:119018725 11:118971780 TRAPPC4--FOXR1 BS_QEYPFYHD ARRIBA other 35 5 medium [INTRACHROMOSOMAL[chr11:0.04Mb],LOCAL_REARRANGEMENT:+:[37141]],duplication TRAPPC4 NA FOXR1 NA NA CosmicCensus, TranscriptionFactor NA NA NA +11:119018725 11:118971780 TRAPPC4--FOXR1 BS_QEYPFYHD STARFUSION other 37 4 NA [INTRACHROMOSOMAL[chr11:0.04Mb],LOCAL_REARRANGEMENT:+:[37141]] TRAPPC4 NA FOXR1 NA NA CosmicCensus, TranscriptionFactor NA NA NA +3:52284528 3:52634815 WDR82--PBRM1 BS_QEYPFYHD ARRIBA other 25 0 medium [INTRACHROMOSOMAL[chr3:0.26Mb]],duplication WDR82 NA PBRM1 NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QF5VVZX5 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QF5VVZX5 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_QF5VVZX5 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_QF5VVZX5 ARRIBA in-frame 42 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_QF5VVZX5 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +8:74612940 8:74500513 MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_QF5VVZX5 ARRIBA other 3 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_QF5VVZX5 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QF5VVZX5 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:83656754 6:84313884 SNAP91--CEP162(86249)/LINC01611(107144) BS_QF5VVZX5 ARRIBA frameshift 5 0 medium [],duplication SNAP91 NA CEP162 LINC01611 NA NA NA NA NA +7:44987380 7:44978993 SNHG15(419)/CCM2(12095)--MYO1G BS_QF5VVZX5 ARRIBA other 1 1 medium [],inversion SNHG15 CCM2 MYO1G NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_QH82PBMB ARRIBA in-frame 5 0 medium [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:7271844 7:7234303 AC005532.1--C1GALT1 BS_QHS3V0GP ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[6503]],duplication AC005532.1 NA C1GALT1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QHS3V0GP ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QHS3V0GP ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_QHS3V0GP ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_QHS3V0GP ARRIBA frameshift 2 0 low [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +7:91045960 7:90726567 CDK14--CDK14 BS_QHS3V0GP ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.74Mb]],duplication/non-canonical_splicing CDK14 NA CDK14 NA Kinase Kinase NA NA NA +7:90726812 7:131429033 CDK14--MKLN1 BS_QHS3V0GP ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90726812 7:131397267 CDK14--MKLN1 BS_QHS3V0GP ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:91045960 7:131429033 CDK14--MKLN1 BS_QHS3V0GP ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90726812 7:131411306 CDK14--MKLN1 BS_QHS3V0GP ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90747775 7:131429033 CDK14--MKLN1 BS_QHS3V0GP ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +1:98054503 1:98684885 MIR137HG(4640)/NFU1P2(22497)--SNX7 BS_QHS3V0GP ARRIBA other 3 0 high [],deletion MIR137HG NFU1P2 SNX7 NA NA NA NA NA NA +7:131466415 7:91045897 MKLN1--CDK14 BS_QHS3V0GP ARRIBA frameshift 16 0 high [INTRACHROMOSOMAL[chr7:39.90Mb]],duplication MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion +7:131466415 7:91045897 MKLN1--CDK14 BS_QHS3V0GP STARFUSION frameshift 17 1 NA [INTRACHROMOSOMAL[chr7:39.90Mb]] MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion +12:44665484 12:44714741 NELL2--NELL2 BS_QHS3V0GP ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +X:74614422 X:55608203 RLIM--AL627224.1(8097)/FOXR2(15197) BS_QHS3V0GP ARRIBA other 54 2 high [],inversion RLIM NA AL627224.1 FOXR2 NA NA NA TranscriptionFactor, Oncogene NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QHS3V0GP ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QNAQGAV6 ARRIBA other 61 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QNAQGAV6 ARRIBA other 61 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_QNAQGAV6 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +14:49586870 6:52995629 AL139099.5--RN7SK BS_QNAQGAV6 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr6]] AL139099.5 NA RN7SK NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_QNAQGAV6 ARRIBA frameshift 10 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_QNAQGAV6 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_QNAQGAV6 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_QNAQGAV6 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_QNAQGAV6 ARRIBA frameshift 16 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_QNAQGAV6 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_QNAQGAV6 ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +10:12998338 10:13074100 CCDC3--CCDC3 BS_QNAQGAV6 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA +8:112636817 8:112685732 CSMD3--CSMD3 BS_QNAQGAV6 ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_QNAQGAV6 ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_QNAQGAV6 ARRIBA frameshift 31 5 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_QNAQGAV6 ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_QNAQGAV6 ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_QNAQGAV6 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_QNAQGAV6 ARRIBA frameshift 10 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_QNAQGAV6 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_QNAQGAV6 ARRIBA frameshift 16 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_QNAQGAV6 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_QNAQGAV6 ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:211019256 KCNH1--AL590132.1 BS_QNAQGAV6 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211082898 KCNH1--AL590132.1 BS_QNAQGAV6 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_QNAQGAV6 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_QNAQGAV6 ARRIBA frameshift 16 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_QNAQGAV6 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +3:178801793 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_QNAQGAV6 ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_QNAQGAV6 ARRIBA other 5 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +2:8324542 2:8392968 LINC00299--LINC00299(9347)/AC011747.2(150624) BS_QNAQGAV6 ARRIBA other 2 0 low [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_QNAQGAV6 ARRIBA other 6 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_QNAQGAV6 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_QNAQGAV6 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:81325777 12:81384244 PPFIA2--PPFIA2 BS_QNAQGAV6 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.50Mb]],duplication/non-canonical_splicing PPFIA2 NA PPFIA2 NA NA NA NA NA NA +1:13782831 1:13769039 PRDM2--PRDM2 BS_QNAQGAV6 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_QNAQGAV6 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_QNAQGAV6 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +14:49862566 6:52995633 RN7SL2--7SK BS_QNAQGAV6 STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_QNAQGAV6 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +8:89331998 8:89725641 RPSAP74(88205)/KRT8P4(80623)--AF117829.1 BS_QNAQGAV6 ARRIBA other 2 0 medium [],duplication RPSAP74 KRT8P4 AF117829.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QNAQGAV6 ARRIBA other 61 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:105976131 9:105721537 SLC25A6P5(124706)/LINC01505(17179)--TMEM38B BS_QNAQGAV6 ARRIBA other 2 0 medium [],duplication SLC25A6P5 LINC01505 TMEM38B NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_QNAQGAV6 ARRIBA in-frame 4 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +6:52995906 14:49586589 7SK--AL139099.5 BS_QP6MSKRE STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL139099.5 NA NA NA NA NA NA +6:52995907 14:49586587 7SK--RN7SL1 BS_QP6MSKRE STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QP6MSKRE ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QP6MSKRE ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:96341383 11:102114144 MAML2--YAP1 BS_QP6MSKRE ARRIBA in-frame 59 6 high [CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion +11:96341383 11:102114144 MAML2--YAP1 BS_QP6MSKRE STARFUSION in-frame 60 6 NA [CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]] MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion +14:49862574 6:52995679 RN7SL2--7SK BS_QP6MSKRE STARFUSION other 4 6 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862561 6:52995775 RN7SL2--7SK BS_QP6MSKRE STARFUSION other 4 6 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QP6MSKRE ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:17229380 14:49586598 VIM-AS1--AL139099.5 BS_QP6MSKRE STARFUSION other 10 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA AL139099.5 NA NA NA NA NA NA +10:17229380 14:49586598 VIM-AS1--RN7SL1 BS_QP6MSKRE STARFUSION other 10 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA RN7SL1 NA NA NA NA NA NA +11:102111169 11:96093517 YAP1--MAML2 BS_QP6MSKRE ARRIBA in-frame 40 9 high [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion +11:102111169 11:96093517 YAP1--MAML2 BS_QP6MSKRE STARFUSION in-frame 40 11 NA [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]] YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion +16:29082041 4:113174416 AC009093.3--ANK2 BS_QPPPGYP4 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QPPPGYP4 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_QPPPGYP4 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_QPPPGYP4 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_QPPPGYP4 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +9:38462233 9:38456118 AL390726.6--AL390726.6 BS_QPPPGYP4 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.11Mb]],duplication/non-canonical_splicing AL390726.6 NA AL390726.6 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_QPPPGYP4 ARRIBA other 5 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +9:32966676 9:32989895 ASS1P12(19454)/APTX(5930)--APTX BS_QPPPGYP4 ARRIBA other 3 0 medium [],duplication ASS1P12 APTX APTX NA NA NA NA NA NA +9:119208719 9:119214155 BRINP1--BRINP1 BS_QPPPGYP4 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_QPPPGYP4 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_QPPPGYP4 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_QPPPGYP4 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_QPPPGYP4 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100561397 CAVIN4--TMEFF1 BS_QPPPGYP4 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +5:24535112 5:24537674 CDH10--CDH10 BS_QPPPGYP4 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_QPPPGYP4 ARRIBA other 14 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_QPPPGYP4 ARRIBA frameshift 54 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +1:240211235 1:240177921 FMN2--FMN2 BS_QPPPGYP4 ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing FMN2 NA FMN2 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_QPPPGYP4 ARRIBA frameshift 5 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +1:219218712 1:219210532 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_QPPPGYP4 ARRIBA other 5 1 medium [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_QPPPGYP4 ARRIBA frameshift 15 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_QPPPGYP4 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_QPPPGYP4 ARRIBA frameshift 16 3 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QPPPGYP4 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +13:72512666 13:71681910 SNORA68(52065)/uc_338(54547)--DACH1 BS_QPPPGYP4 ARRIBA other 6 3 medium [],deletion SNORA68 uc_338 DACH1 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_QPPPGYP4 ARRIBA frameshift 24 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +8:93820230 8:93786223 TMEM67(996)/AC084346.1(14224)--TMEM67 BS_QPPPGYP4 ARRIBA other 1 0 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +17:21000942 14:49862817 USP22--RN7SL2 BS_QPPPGYP4 STARFUSION other 12 3 NA [FA_CancerSupp,INTERCHROMOSOMAL[chr17--chr14]] USP22 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QRDT19KS ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QRDT19KS ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:146516446 1:146504741 AC245407.1--AC245407.2(42882)/AC245407.1(9730) BS_QRDT19KS ARRIBA other 3 0 medium [],duplication AC245407.1 NA AC245407.2 AC245407.1 NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_QRDT19KS ARRIBA other 9 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +12:14444584 6:116260527 ATF7IP--DSE BS_QRDT19KS ARRIBA other 1 2 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation ATF7IP NA DSE NA Oncogene NA NA NA NA +19:12880802 19:13262833 DNASE2--CACNA1A BS_QRDT19KS ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr19:0.32Mb]],duplication DNASE2 NA CACNA1A NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_QRDT19KS ARRIBA frameshift 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +8:17957775 8:17775286 PCM1--MTUS1 BS_QRDT19KS ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/5'-5' PCM1 NA MTUS1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_QRDT19KS ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QRDT19KS ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:66686994 6:111850848 SPTBN2--FYN BS_QRDT19KS ARRIBA frameshift 1 2 medium [INTERCHROMOSOMAL[chr11--chr6]],translocation SPTBN2 NA FYN NA NA Kinase, Oncogene, Kinase NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_QRDT19KS ARRIBA other 21 4 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +19:12710621 19:13153612 TNPO2--IER2 BS_QRDT19KS ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/5'-5' TNPO2 NA IER2 NA NA Oncogene NA NA NA +7:93275719 7:92498767 VPS50--PEX1 BS_QRDT19KS ARRIBA other 5 5 medium [INTRACHROMOSOMAL[chr7:0.70Mb]],duplication/5'-5' VPS50 NA PEX1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QRNSKFMS ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QRNSKFMS ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:7656768 14:49862815 ATP1B2--RN7SL2 BS_QRNSKFMS STARFUSION other 13 1 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_QRNSKFMS STARFUSION other 23 6 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +1:91347429 1:91385834 HFM1--HFM1 BS_QRNSKFMS ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing HFM1 NA HFM1 NA NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_QRNSKFMS ARRIBA in-frame 2 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_QRNSKFMS ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +19:32360618 19:31944435 ZNF507--LINC01837 BS_QRNSKFMS ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr19:0.27Mb]],inversion ZNF507 NA LINC01837 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QSTAVWGE ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QSTAVWGE ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:10213491 5:10227647 AC034229.4(9451)/FAM173B(12839)--FAM173B BS_QSTAVWGE ARRIBA other 4 0 high [],duplication AC034229.4 FAM173B FAM173B NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_QSTAVWGE ARRIBA other 5 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +15:93656437 15:93557472 AC110023.1--AC091078.1 BS_QSTAVWGE ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93557472 AC110023.1--AC091078.1 BS_QSTAVWGE ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_QSTAVWGE ARRIBA in-frame 68 10 high [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_QSTAVWGE ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +18:32974547 18:33348975 CCDC178--CCDC178 BS_QSTAVWGE ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.50Mb]],duplication/non-canonical_splicing CCDC178 NA CCDC178 NA NA NA NA NA NA +10:132846057 10:132851305 CFAP46--CFAP46 BS_QSTAVWGE ARRIBA in-frame 18 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/non-canonical_splicing CFAP46 NA CFAP46 NA NA NA NA NA NA +3:57357176 3:57363786 DNAH12--DNAH12 BS_QSTAVWGE ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +1:15369502 1:15367463 FHAD1--FHAD1 BS_QSTAVWGE ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA +12:25546374 12:25557369 LMNTD1--LMNTD1 BS_QSTAVWGE ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +7:134258405 7:134221779 LRGUK--LRGUK BS_QSTAVWGE ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.14Mb]],duplication/non-canonical_splicing LRGUK NA LRGUK NA Oncogene Oncogene NA NA NA +12:81325777 12:81384244 PPFIA2--PPFIA2 BS_QSTAVWGE ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.50Mb]],duplication/non-canonical_splicing PPFIA2 NA PPFIA2 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_QSTAVWGE ARRIBA frameshift 22 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +18:39202111 18:39208789 RNU6-706P(168001)/AC016205.1(4813)--AC016205.1 BS_QSTAVWGE ARRIBA other 4 0 medium [],duplication RNU6-706P AC016205.1 AC016205.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QSTAVWGE ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_QSTAVWGE ARRIBA other 9 2 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +4:16328660 4:16238771 TAPT1-AS1(8520)/ZEB2P1(32026)--TAPT1-AS1 BS_QSTAVWGE ARRIBA other 1 3 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_QSTAVWGE ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QT3NZ2YZ ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QT3NZ2YZ ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +X:74614422 X:55608203 RLIM--AL627224.1(8097)/FOXR2(15197) BS_QT3NZ2YZ ARRIBA other 50 0 high [],inversion RLIM NA AL627224.1 FOXR2 NA NA NA TranscriptionFactor, Oncogene NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QT3NZ2YZ ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QTSXW7DA ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QTSXW7DA ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_QTSXW7DA ARRIBA other 14 2 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_QTSXW7DA ARRIBA other 9 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_QTSXW7DA ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_QTSXW7DA ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_QTSXW7DA ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_QTSXW7DA ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +17:46152904 17:46172232 KANSL1--KANSL1 BS_QTSXW7DA ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing KANSL1 NA KANSL1 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_QTSXW7DA ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +11:122066136 11:122089048 MIR100HG--MIR100HG BS_QTSXW7DA ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.53Mb]],duplication MIR100HG NA MIR100HG NA NA NA NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_QTSXW7DA ARRIBA other 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_QTSXW7DA ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QTSXW7DA ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52212079 8:52221793 ST18--ST18 BS_QTSXW7DA ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +6:52995910 14:49862664 7SK--RN7SL2 BS_QV51J756 STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QV51J756 ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QV51J756 ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:49586785 6:52995791 AL139099.5--RN7SK BS_QV51J756 STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr14--chr6]] AL139099.5 NA RN7SK NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_QV51J756 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_QV51J756 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_QV51J756 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_QV51J756 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_QV51J756 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_QV51J756 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +17:6899985 17:6892003 ALOX12P2--ALOX12P2 BS_QV51J756 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.10Mb]],duplication/non-canonical_splicing ALOX12P2 NA ALOX12P2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_QV51J756 ARRIBA other 7 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +18:79307234 18:79193183 ATP9B--ATP9B BS_QV51J756 ARRIBA in-frame 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_QV51J756 ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_QV51J756 ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_QV51J756 ARRIBA frameshift 19 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_QV51J756 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_QV51J756 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_QV51J756 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +14:31302295 14:31347907 HEATR5A--HEATR5A BS_QV51J756 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing HEATR5A NA HEATR5A NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_QV51J756 ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_QV51J756 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_QV51J756 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_QV51J756 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_QV51J756 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_QV51J756 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_QV51J756 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_QV51J756 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_QV51J756 ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +14:38745144 14:38334252 LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_QV51J756 ARRIBA other 1 1 medium [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA +9:100427393 9:136617740 MSANTD3--LINC01451 BS_QV51J756 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr9:36.16Mb]],inversion MSANTD3 NA LINC01451 NA TranscriptionFactor NA NA NA NA +9:100435820 9:136640190 MSANTD3--LINC01451(23009)/HSPC324(8420) BS_QV51J756 ARRIBA other 2 1 medium [],inversion MSANTD3 NA LINC01451 HSPC324 TranscriptionFactor NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_QV51J756 ARRIBA other 7 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_QV51J756 ARRIBA other 9 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_QV51J756 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_QV51J756 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_QV51J756 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +14:49586790 6:52995790 RN7SL1--7SK BS_QV51J756 STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QV51J756 ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:144905091 1:144955601 SRGAP2B--SRGAP2B BS_QV51J756 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SRGAP2B NA SRGAP2B NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_QV51J756 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_QV51J756 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +6:64590223 6:64593309 EYS--EYS BS_QW60M0FE ARRIBA frameshift 20 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +1:117368485 22:24938287 MAN1A2--TMEM211 BS_QW60M0FE ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr1--chr22]],translocation MAN1A2 NA TMEM211 NA NA NA NA NA NA +1:117368485 22:24939451 MAN1A2--TMEM211 BS_QW60M0FE ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr1--chr22]],translocation MAN1A2 NA TMEM211 NA NA NA NA NA NA +10:94032252 10:94005450 PLCE1--PIPSL(43910)/PLCE1(25362) BS_QW60M0FE ARRIBA frameshift 3 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_QW60M0FE ARRIBA frameshift 2 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_QW60M0FE ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19782386 13:19835689 PSPC1--ZMYM5 BS_QW60M0FE ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +6:52995911 14:49862667 7SK--RN7SL2 BS_QWNBZ9RJ STARFUSION other 4 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QWNBZ9RJ ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QWNBZ9RJ ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:73257047 16:73143831 AC087565.3--ZFHX3 BS_QWNBZ9RJ STARFUSION other 13 8 NA [INTRACHROMOSOMAL[chr16:0.17Mb]] AC087565.3 NA ZFHX3 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_QWNBZ9RJ ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_QWNBZ9RJ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +10:4949861 10:4830675 AKR1C6P(57886)/U8(12575)--AKR1E2 BS_QWNBZ9RJ ARRIBA other 1 1 low [],duplication AKR1C6P U8 AKR1E2 NA NA NA NA NA NA +22:32273507 22:32246174 AL008723.1--SLC5A4-AS1 BS_QWNBZ9RJ ARRIBA other 1 2 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]],duplication AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA +22:32273507 22:32269357 AL008723.1--SLC5A4-AS1 BS_QWNBZ9RJ ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]],duplication AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA +22:32273507 22:32268288 AL008723.1--SLC5A4-AS1 BS_QWNBZ9RJ STARFUSION other 42 2 NA [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]] AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_QWNBZ9RJ ARRIBA other 4 2 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +9:119208719 9:119214155 BRINP1--BRINP1 BS_QWNBZ9RJ ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_QWNBZ9RJ ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_QWNBZ9RJ ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_QWNBZ9RJ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100547744 CAVIN4--MSANTD3-TMEFF1 BS_QWNBZ9RJ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_QWNBZ9RJ ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_QWNBZ9RJ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100547744 CAVIN4--TMEFF1 BS_QWNBZ9RJ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +18:65824831 18:65809704 CDH7--CDH7 BS_QWNBZ9RJ ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_QWNBZ9RJ ARRIBA in-frame 39 11 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_QWNBZ9RJ ARRIBA frameshift 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_QWNBZ9RJ ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:34091883 6:34133859 GRM4--GRM4 BS_QWNBZ9RJ ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_QWNBZ9RJ ARRIBA in-frame 9 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_QWNBZ9RJ ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_QWNBZ9RJ ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +20:16312335 20:16382130 KIF16B--KIF16B BS_QWNBZ9RJ ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.30Mb]],duplication/non-canonical_splicing KIF16B NA KIF16B NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_QWNBZ9RJ ARRIBA frameshift 78 4 high [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +8:124555742 8:124558832 MTSS1--MTSS1 BS_QWNBZ9RJ ARRIBA frameshift 45 5 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +2:1839149 2:1892287 MYT1L--MYT1L BS_QWNBZ9RJ ARRIBA frameshift 45 4 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +4:118251569 4:118283111 NDST3--PRSS12 BS_QWNBZ9RJ ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_INVERSION:+:-:[21390]],duplication/3'-3' NDST3 NA PRSS12 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_QWNBZ9RJ ARRIBA in-frame 21 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_QWNBZ9RJ ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +6:165379194 6:165388453 PDE10A--PDE10A BS_QWNBZ9RJ ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.66Mb]],duplication/non-canonical_splicing PDE10A NA PDE10A NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_QWNBZ9RJ ARRIBA in-frame 10 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_QWNBZ9RJ ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +15:24535806 15:24508861 PWRN1--PWRN1 BS_QWNBZ9RJ ARRIBA other 9 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.16Mb]],duplication/non-canonical_splicing PWRN1 NA PWRN1 NA NA NA NA NA NA +11:507266 4:2933944 RNH1--MFSD10 BS_QWNBZ9RJ ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr11--chr4]],translocation/3'-3' RNH1 NA MFSD10 NA TumorSuppressorGene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QWNBZ9RJ ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:130288227 6:130313093 SAMD3--SAMD3 BS_QWNBZ9RJ ARRIBA other 5 1 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication SAMD3 NA SAMD3 NA NA NA NA NA NA +12:111448370 12:111457359 SH2B3--ATXN2 BS_QWNBZ9RJ ARRIBA other 1 0 low [ChimerSeq,ChimerPub,INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[591]],inversion SH2B3 NA ATXN2 NA TumorSuppressorGene, CosmicCensus NA NA NA TCGAFusion +12:111451122 12:111513539 SH2B3--ATXN2 BS_QWNBZ9RJ ARRIBA other 1 0 low [ChimerSeq,ChimerPub,INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[591]],duplication/3'-3' SH2B3 NA ATXN2 NA TumorSuppressorGene, CosmicCensus NA NA NA TCGAFusion +8:52212079 8:52230077 ST18--ST18 BS_QWNBZ9RJ ARRIBA frameshift 27 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_QWNBZ9RJ ARRIBA in-frame 9 3 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +19:54422410 19:53642239 TTYH1--DPRX(5230)/RNU6-698P(11446) BS_QWNBZ9RJ ARRIBA frameshift 44 2 high [],duplication TTYH1 NA DPRX RNU6-698P Oncogene TranscriptionFactor NA NA NA +19:51949235 19:51948593 ZNF350-AS1--ZNF613 BS_QWNBZ9RJ STARFUSION other 13 4 NA [INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_REARRANGEMENT:+:[375]] ZNF350-AS1 NA ZNF613 NA NA TranscriptionFactor NA NA NA +14:74295148 18:25420189 ABCD4--ZNF521(67999)/RN7SL97P(398045) BS_QWTE1CWR ARRIBA frameshift 2 0 medium [],translocation ABCD4 NA ZNF521 RN7SL97P NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +17:1067077 13:26685688 ABR--WASF3 BS_QWTE1CWR ARRIBA frameshift 112 20 high [INTERCHROMOSOMAL[chr17--chr13]],translocation ABR NA WASF3 NA Oncogene NA NA NA NA +17:1067077 13:26685688 ABR--WASF3 BS_QWTE1CWR STARFUSION frameshift 114 20 NA [INTERCHROMOSOMAL[chr17--chr13]] ABR NA WASF3 NA Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QWTE1CWR ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QWTE1CWR ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +18:60129655 7:157823990 AC090771.2--PTPRN2 BS_QWTE1CWR ARRIBA other 13 1 high [INTERCHROMOSOMAL[chr18--chr7]],translocation/5'-5' AC090771.2 NA PTPRN2 NA NA NA NA NA NA +19:35745991 19:29379279 AD000671.1--AC011474.1 BS_QWTE1CWR ARRIBA frameshift 6 2 medium [INTRACHROMOSOMAL[chr19:6.22Mb]],duplication/5'-5' AD000671.1 NA AC011474.1 NA NA NA NA NA NA +7:141596641 7:153058241 AGK--ACTR3B(202863)/AC079809.1(86072) BS_QWTE1CWR ARRIBA frameshift 1 1 high [],deletion AGK NA ACTR3B AC079809.1 NA NA NA NA NA +1:181037 20:43618940 AL627309.5(7175)/FO538757.2(1659)--IFT52 BS_QWTE1CWR ARRIBA other 28 0 medium [],translocation AL627309.5 FO538757.2 IFT52 NA NA NA NA NA NA +22:42807073 22:35380934 ARFGAP3--HMOX1 BS_QWTE1CWR ARRIBA frameshift 9 3 high [INTRACHROMOSOMAL[chr22:7.40Mb]],inversion ARFGAP3 NA HMOX1 NA NA NA NA NA NA +22:42807073 22:35383106 ARFGAP3--HMOX1 BS_QWTE1CWR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr22:7.40Mb]],inversion ARFGAP3 NA HMOX1 NA NA NA NA NA NA +10:31928822 10:14530515 ARHGAP12--FAM107B BS_QWTE1CWR ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr10:17.03Mb]],inversion/3'-3' ARHGAP12 NA FAM107B NA NA NA NA NA NA +1:235160893 1:190487896 ARID4B--AL391645.1 BS_QWTE1CWR ARRIBA other 9 1 high [INTRACHROMOSOMAL[chr1:44.64Mb]],deletion/5'-5' ARID4B NA AL391645.1 NA NA NA NA NA NA +1:200815644 1:185355891 CAMSAP2--GS1-279B7.1(20852)/RNU7-183P(78353) BS_QWTE1CWR ARRIBA frameshift 3 0 high [],inversion CAMSAP2 NA GS1-279B7.1 RNU7-183P NA NA NA NA NA +1:200815644 1:185389746 CAMSAP2--GS1-279B7.1(54707)/RNU7-183P(44498) BS_QWTE1CWR ARRIBA frameshift 12 2 high [],inversion CAMSAP2 NA GS1-279B7.1 RNU7-183P NA NA NA NA NA +1:214641998 1:211514480 CENPF--RD3(21563)/AC105275.1(21563)/SLC30A1(57088) BS_QWTE1CWR ARRIBA frameshift 6 0 low [],inversion CENPF NA RD3 AC105275.1 Oncogene NA NA NA NA +12:108678272 10:18551971 CORO1C--NSUN6 BS_QWTE1CWR ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr12--chr10]],translocation CORO1C NA NSUN6 NA Oncogene NA NA NA NA +17:1455877 13:21539688 CRK--MICU2 BS_QWTE1CWR ARRIBA in-frame 11 0 medium [INTERCHROMOSOMAL[chr17--chr13]],translocation CRK NA MICU2 NA Oncogene NA NA NA NA +11:70415717 11:64746987 CTTN--PYGM BS_QWTE1CWR ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr11:5.64Mb]],inversion CTTN NA PYGM NA Oncogene NA NA NA NA +10:35090430 1:185909337 CUL2--HMCN1 BS_QWTE1CWR ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr10--chr1]],translocation CUL2 NA HMCN1 NA TumorSuppressorGene NA NA NA NA +10:35090430 1:198172093 CUL2--NEK7 BS_QWTE1CWR ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr10--chr1]],translocation/5'-5' CUL2 NA NEK7 NA TumorSuppressorGene Kinase, Kinase NA NA NA +1:197772868 1:183207046 DENND1B--LAMC2 BS_QWTE1CWR ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:14.26Mb]],deletion/5'-5' DENND1B NA LAMC2 NA NA NA NA NA NA +1:231818517 1:231900746 DISC1--DISC1 BS_QWTE1CWR ARRIBA frameshift 2 0 medium [SELFIE,INTRACHROMOSOMAL[chr1:0.41Mb]],inversion/3'-3' DISC1 NA DISC1 NA NA NA NA NA NA +18:49257010 18:67478352 DYM--AC091042.1(103047)/AC110597.1(3439) BS_QWTE1CWR ARRIBA frameshift 5 0 high [],duplication DYM NA AC091042.1 AC110597.1 Oncogene NA NA NA NA +18:49391593 18:48041123 DYM--ZBTB7C BS_QWTE1CWR ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chr18:0.63Mb]],deletion DYM NA ZBTB7C NA Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA +18:49257010 18:48165257 DYM--ZBTB7C BS_QWTE1CWR ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr18:0.63Mb]],deletion DYM NA ZBTB7C NA Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA +18:49257010 18:48180477 DYM--ZBTB7C BS_QWTE1CWR ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr18:0.63Mb]],deletion DYM NA ZBTB7C NA Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA +10:32346763 12:107709111 EPC1--PWP1 BS_QWTE1CWR ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr10--chr12]],translocation EPC1 NA PWP1 NA NA NA NA NA NA +10:32346763 12:107708926 EPC1--PWP1 BS_QWTE1CWR ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr10--chr12]],translocation EPC1 NA PWP1 NA NA NA NA NA NA +10:32346763 12:107704636 EPC1--PWP1 BS_QWTE1CWR ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr10--chr12]],translocation EPC1 NA PWP1 NA NA NA NA NA NA +10:32346763 12:107702935 EPC1--PWP1 BS_QWTE1CWR ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr10--chr12]],translocation EPC1 NA PWP1 NA NA NA NA NA NA +10:32346763 12:107703685 EPC1--PWP1 BS_QWTE1CWR ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr10--chr12]],translocation EPC1 NA PWP1 NA NA NA NA NA NA +12:128888744 10:30702093 GLT1D1--SVILP1 BS_QWTE1CWR ARRIBA frameshift 4 2 high [INTERCHROMOSOMAL[chr12--chr10]],translocation/5'-5' GLT1D1 NA SVILP1 NA NA NA NA NA NA +10:32958145 1:200581294 ITGB1--KIF14 BS_QWTE1CWR ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr10--chr1]],translocation ITGB1 NA KIF14 NA TumorSuppressorGene Oncogene NA NA NA +10:32957759 1:200581294 ITGB1--KIF14 BS_QWTE1CWR ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr10--chr1]],translocation ITGB1 NA KIF14 NA TumorSuppressorGene Oncogene NA NA NA +10:32958145 1:200581294 ITGB1--KIF14 BS_QWTE1CWR STARFUSION other 21 0 NA [INTERCHROMOSOMAL[chr10--chr1]] ITGB1 NA KIF14 NA TumorSuppressorGene Oncogene NA NA NA +1:200569911 1:206303281 KIF14--SRGAP2 BS_QWTE1CWR ARRIBA in-frame 17 3 high [INTRACHROMOSOMAL[chr1:5.58Mb]],inversion KIF14 NA SRGAP2 NA Oncogene NA NA NA NA +1:200569911 1:206303281 KIF14--SRGAP2 BS_QWTE1CWR STARFUSION in-frame 17 3 NA [INTRACHROMOSOMAL[chr1:5.58Mb]] KIF14 NA SRGAP2 NA Oncogene NA NA NA NA +22:33919995 18:31762139 LARGE1--SLC25A52(1259)/TRAPPC8(67034) BS_QWTE1CWR ARRIBA other 4 0 high [],translocation LARGE1 NA SLC25A52 TRAPPC8 NA NA NA NA NA +1:206685508 10:27481527 MAPKAPK2--PTCHD3(67159)/RAB18(22647) BS_QWTE1CWR ARRIBA frameshift 11 1 high [],translocation MAPKAPK2 NA PTCHD3 RAB18 Kinase, Oncogene, Kinase NA NA NA NA +5:10353917 22:35262323 MARCH6--HMGXB4 BS_QWTE1CWR ARRIBA frameshift 18 0 high [INTERCHROMOSOMAL[chr5--chr22]],translocation MARCH6 NA HMGXB4 NA NA NA NA NA NA +5:10353917 22:35263078 MARCH6--HMGXB4 BS_QWTE1CWR ARRIBA in-frame 5 0 medium [INTERCHROMOSOMAL[chr5--chr22]],translocation MARCH6 NA HMGXB4 NA NA NA NA NA NA +5:10353917 22:35262323 MARCH6--HMGXB4 BS_QWTE1CWR STARFUSION other 18 0 NA [INTERCHROMOSOMAL[chr5--chr22]] MARCH6 NA HMGXB4 NA NA NA NA NA NA +22:18024281 22:17895491 MICAL3--MICAL3 BS_QWTE1CWR ARRIBA other 2 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr22:0.24Mb]],inversion/5'-5' MICAL3 NA MICAL3 NA NA NA NA NA NA +13:21603939 13:26853435 MICU2--GPR12(92650)/FGFR1OP2P1(51927) BS_QWTE1CWR ARRIBA frameshift 3 0 high [],inversion MICU2 NA GPR12 FGFR1OP2P1 NA NA NA NA NA +1:198937226 10:34269899 MIR181A1HG--PARD3 BS_QWTE1CWR ARRIBA other 26 5 high [INTERCHROMOSOMAL[chr1--chr10]],translocation MIR181A1HG NA PARD3 NA NA NA NA NA NA +1:198937226 10:34269899 MIR181A1HG--PARD3 BS_QWTE1CWR STARFUSION other 27 5 NA [INTERCHROMOSOMAL[chr1--chr10]] MIR181A1HG NA PARD3 NA NA NA NA NA NA +22:46080655 22:45297237 MIRLET7BHG--UPK3A BS_QWTE1CWR ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr22:0.76Mb]],inversion/3'-3' MIRLET7BHG NA UPK3A NA NA NA NA NA NA +22:46080655 22:45297237 MIRLET7BHG--UPK3A(1363)/FAM118A(11731) BS_QWTE1CWR ARRIBA other 72 8 high [],inversion MIRLET7BHG NA UPK3A FAM118A NA NA NA NA NA +22:40636478 22:32422126 MKL1--BPIFC BS_QWTE1CWR ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr22:7.95Mb]],inversion/5'-5' MKL1 NA BPIFC NA Oncogene NA NA NA NA +22:40636478 22:32478981 MKL1--FBXO7 BS_QWTE1CWR ARRIBA other 15 6 high [INTRACHROMOSOMAL[chr22:7.91Mb]],inversion MKL1 NA FBXO7 NA Oncogene NA NA NA NA +22:40636478 22:32479133 MKL1--FBXO7 BS_QWTE1CWR ARRIBA other 8 2 medium [INTRACHROMOSOMAL[chr22:7.91Mb]],inversion MKL1 NA FBXO7 NA Oncogene NA NA NA NA +22:40636478 22:32483897 MKL1--FBXO7 BS_QWTE1CWR ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr22:7.91Mb]],inversion MKL1 NA FBXO7 NA Oncogene NA NA NA NA +22:40636478 22:32485068 MKL1--FBXO7 BS_QWTE1CWR ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr22:7.91Mb]],inversion MKL1 NA FBXO7 NA Oncogene NA NA NA NA +22:40636478 22:32478981 MKL1--FBXO7 BS_QWTE1CWR STARFUSION other 15 9 NA [INTRACHROMOSOMAL[chr22:7.91Mb]] MKL1 NA FBXO7 NA Oncogene NA NA NA NA +22:40636478 22:32462618 MKL1--FBXO7 BS_QWTE1CWR STARFUSION other 8 9 NA [INTRACHROMOSOMAL[chr22:7.91Mb]] MKL1 NA FBXO7 NA Oncogene NA NA NA NA +22:40636478 22:32479133 MKL1--FBXO7 BS_QWTE1CWR STARFUSION other 8 9 NA [INTRACHROMOSOMAL[chr22:7.91Mb]] MKL1 NA FBXO7 NA Oncogene NA NA NA NA +22:40552106 22:33597066 MKL1--LARGE1 BS_QWTE1CWR ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr22:6.49Mb]],inversion/5'-5' MKL1 NA LARGE1 NA Oncogene NA NA NA NA +22:40636478 22:32399635 MKL1--RTCB BS_QWTE1CWR ARRIBA other 21 0 high [INTRACHROMOSOMAL[chr22:8.00Mb]],inversion/5'-5' MKL1 NA RTCB NA Oncogene NA NA NA NA +22:40632720 5:9244839 MKL1--SEMA5A BS_QWTE1CWR ARRIBA other 24 1 medium [INTERCHROMOSOMAL[chr22--chr5]],translocation/5'-5' MKL1 NA SEMA5A NA Oncogene NA NA NA NA +22:19435946 19:35358858 MRPL40--FFAR3 BS_QWTE1CWR ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr22--chr19]],translocation MRPL40 NA FFAR3 NA NA NA NA NA NA +18:72858826 18:49379758 NETO1--DYM BS_QWTE1CWR ARRIBA in-frame 5 2 high [INTRACHROMOSOMAL[chr18:23.28Mb]],deletion NETO1 NA DYM NA NA Oncogene NA NA NA +22:38843235 5:40604036 NPTXR--TTC33 BS_QWTE1CWR ARRIBA other 8 1 high [INTERCHROMOSOMAL[chr22--chr5]],translocation NPTXR NA TTC33 NA NA NA NA NA NA +22:38843235 5:40513069 NPTXR--TTC33 BS_QWTE1CWR ARRIBA other 7 0 high [INTERCHROMOSOMAL[chr22--chr5]],translocation NPTXR NA TTC33 NA NA NA NA NA NA +17:5419354 17:9674891 NUP88--USP43 BS_QWTE1CWR ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr17:4.22Mb]],inversion NUP88 NA USP43 NA NA NA NA NA NA +17:5419354 17:9680231 NUP88--USP43 BS_QWTE1CWR ARRIBA in-frame 4 0 high [INTRACHROMOSOMAL[chr17:4.22Mb]],inversion NUP88 NA USP43 NA NA NA NA NA NA +17:5419354 17:9676746 NUP88--USP43 BS_QWTE1CWR ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr17:4.22Mb]],inversion NUP88 NA USP43 NA NA NA NA NA NA +10:34269657 10:33415026 PARD3--AL353600.1(73121)/AC018980.1(163905) BS_QWTE1CWR ARRIBA frameshift 2 0 medium [],deletion PARD3 NA AL353600.1 AC018980.1 NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_QWTE1CWR ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +19:35745991 19:29379279 PSENEN--AC011474.1 BS_QWTE1CWR ARRIBA frameshift 6 2 medium [INTRACHROMOSOMAL[chr19:6.22Mb]],duplication/5'-5' PSENEN NA AC011474.1 NA NA NA NA NA NA +1:235160511 1:190487896 RBM34--AL391645.1 BS_QWTE1CWR ARRIBA frameshift 13 1 high [INTRACHROMOSOMAL[chr1:44.64Mb]],deletion/5'-5' RBM34 NA AL391645.1 NA Oncogene NA NA NA NA +14:49862563 9:35658012 RN7SL2--RMRP BS_QWTE1CWR STARFUSION other 4 12 NA [INTERCHROMOSOMAL[chr14--chr9]] RN7SL2 NA RMRP NA NA Oncogene NA NA NA +14:49862574 9:35657868 RN7SL2--RMRP BS_QWTE1CWR STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr14--chr9]] RN7SL2 NA RMRP NA NA Oncogene NA NA NA +14:49862555 9:35658011 RN7SL2--RMRP BS_QWTE1CWR STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr14--chr9]] RN7SL2 NA RMRP NA NA Oncogene NA NA NA +18:21110818 18:21208885 ROCK1--EXOGP1(25386)/AC022809.1(31790) BS_QWTE1CWR ARRIBA frameshift 2 0 medium [],inversion ROCK1 NA EXOGP1 AC022809.1 Kinase, Kinase NA NA NA NA +17:5421466 17:4889647 RPAIN--MINK1 BS_QWTE1CWR ARRIBA in-frame 43 4 high [INTRACHROMOSOMAL[chr17:0.52Mb]],duplication RPAIN NA MINK1 NA NA Kinase NA NA NA +17:5421466 17:4889647 RPAIN--MINK1 BS_QWTE1CWR STARFUSION in-frame 44 6 NA [INTRACHROMOSOMAL[chr17:0.52Mb]] RPAIN NA MINK1 NA NA Kinase NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QWTE1CWR ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:232629869 1:203770828 SIPA1L2(68311)/RNU6-1211P(70335)--LAX1 BS_QWTE1CWR ARRIBA other 13 1 high [],inversion SIPA1L2 RNU6-1211P LAX1 NA NA NA NA NA NA +8:50708978 8:50704600 SNTG1--SNTG1 BS_QWTE1CWR ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +5:6656179 22:34114485 SRD5A1--LINC01643 BS_QWTE1CWR ARRIBA frameshift 11 4 high [INTERCHROMOSOMAL[chr5--chr22]],translocation/5'-5' SRD5A1 NA LINC01643 NA NA NA NA NA NA +1:206303473 1:200581294 SRGAP2--KIF14 BS_QWTE1CWR ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:5.58Mb]],inversion SRGAP2 NA KIF14 NA NA Oncogene NA NA NA +11:126264096 11:109776703 SRPRA--AP002444.1 BS_QWTE1CWR ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr11:16.44Mb]],deletion SRPRA NA AP002444.1 NA NA NA NA NA NA +11:126264096 11:109745023 SRPRA--AP003102.1(106895)/AP002444.1(6419) BS_QWTE1CWR ARRIBA frameshift 2 1 medium [],deletion SRPRA NA AP003102.1 AP002444.1 NA NA NA NA NA +22:42179609 5:4121421 TCF20--AC025187.1(79657)/LINC02063(14261) BS_QWTE1CWR ARRIBA frameshift 10 1 high [],translocation TCF20 NA AC025187.1 LINC02063 TranscriptionFactor NA NA NA NA +22:42179609 5:4143247 TCF20--LINC02063 BS_QWTE1CWR ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr22--chr5]],translocation TCF20 NA LINC02063 NA TranscriptionFactor NA NA NA NA +22:38272884 22:35195019 TMEM184B--LINC01399 BS_QWTE1CWR ARRIBA other 10 0 medium [INTRACHROMOSOMAL[chr22:2.99Mb]],deletion TMEM184B NA LINC01399 NA NA NA NA NA NA +12:83061831 19:58491713 TMTC2--SLC27A5 BS_QWTE1CWR ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr12--chr19]],translocation/5'-5' TMTC2 NA SLC27A5 NA NA NA NA NA NA +17:560426 17:5487066 VPS53--MIS12 BS_QWTE1CWR ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr17:4.76Mb]],duplication/5'-5' VPS53 NA MIS12 NA TumorSuppressorGene NA NA NA NA +13:26671989 17:11902719 WASF3--DNAH9 BS_QWTE1CWR ARRIBA in-frame 43 3 high [INTERCHROMOSOMAL[chr13--chr17]],translocation WASF3 NA DNAH9 NA NA Oncogene NA NA NA +13:26671989 17:11902719 WASF3--DNAH9 BS_QWTE1CWR STARFUSION in-frame 43 4 NA [INTERCHROMOSOMAL[chr13--chr17]] WASF3 NA DNAH9 NA NA Oncogene NA NA NA +1:203830203 1:214639921 ZBED6--CENPF BS_QWTE1CWR ARRIBA in-frame 6 0 high [INTRACHROMOSOMAL[chr1:10.75Mb]],deletion ZBED6 NA CENPF NA TranscriptionFactor Oncogene NA NA NA +1:203830203 1:214639921 ZC3H11A--CENPF BS_QWTE1CWR ARRIBA in-frame 6 0 high [INTRACHROMOSOMAL[chr1:10.75Mb]],deletion ZC3H11A NA CENPF NA NA Oncogene NA NA NA +13:21459054 13:27110442 ZDHHC20--USP12 BS_QWTE1CWR ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr13:5.61Mb]],inversion/5'-5' ZDHHC20 NA USP12 NA NA TumorSuppressorGene NA NA NA +18:58865579 18:60129500 ZNF532--AC090771.2 BS_QWTE1CWR ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr18:1.14Mb]],deletion ZNF532 NA AC090771.2 NA TranscriptionFactor NA NA NA NA +18:58896622 18:60129500 ZNF532--AC090771.2 BS_QWTE1CWR ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr18:1.14Mb]],deletion ZNF532 NA AC090771.2 NA TranscriptionFactor NA NA NA NA +18:58865579 7:157823990 ZNF532--PTPRN2 BS_QWTE1CWR ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr18--chr7]],translocation/5'-5' ZNF532 NA PTPRN2 NA TranscriptionFactor NA NA NA NA +18:58865579 18:60060676 ZNF532--RNU6-567P(41945)/AC090771.2(64357) BS_QWTE1CWR ARRIBA other 2 1 medium [],deletion ZNF532 NA RNU6-567P AC090771.2 TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QX12J6W1 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QX12J6W1 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:81288079 3:81360242 AC099542.1--AC099542.1(62897)/AC107302.1(6748) BS_QX12J6W1 ARRIBA other 1 0 low [],duplication AC099542.1 NA AC099542.1 AC107302.1 NA NA NA NA NA +12:6695430 2:210476412 PIANP--LANCL1 BS_QX12J6W1 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr12--chr2]],translocation PIANP NA LANCL1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QX12J6W1 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +22:46762848 22:29042495 TBC1D22A--ZNRF3 BS_QX12J6W1 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr22:17.71Mb]],duplication TBC1D22A NA ZNRF3 NA NA CosmicCensus NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QXKRN6CR ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QXKRN6CR ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:64686568 X:14131583 ADAMTS9--GEMIN8(101690)/AC002524.1(112799) BS_QXKRN6CR ARRIBA frameshift 2 0 high [],translocation ADAMTS9 NA GEMIN8 AC002524.1 TumorSuppressorGene NA NA NA NA +3:64686568 X:14146786 ADAMTS9--GEMIN8(116893)/AC002524.1(97596) BS_QXKRN6CR ARRIBA frameshift 3 0 high [],translocation ADAMTS9 NA GEMIN8 AC002524.1 TumorSuppressorGene NA NA NA NA +21:14825522 21:15043573 AF127577.4--NRIP1 BS_QXKRN6CR ARRIBA other 1 1 medium [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA +3:64000210 X:30697364 ATXN7--GK BS_QXKRN6CR ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr3--chrX]],translocation/5'-5' ATXN7 NA GK NA NA NA NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_QXKRN6CR ARRIBA in-frame 161 49 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_QXKRN6CR ARRIBA in-frame 10 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_QXKRN6CR ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_QXKRN6CR STARFUSION in-frame 168 51 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764856 11:65663900 C11orf95--RELA(806)/RN7SL309P(31652) BS_QXKRN6CR ARRIBA frameshift 5 0 low [],duplication C11orf95 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA +3:50778758 3:49164260 DOCK3--CCDC71 BS_QXKRN6CR ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr3:1.51Mb]],inversion DOCK3 NA CCDC71 NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_QXKRN6CR ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +X:20133764 X:138753305 EIF1AX--FGF13 BS_QXKRN6CR ARRIBA other 3 0 low [INTRACHROMOSOMAL[chrX:118.47Mb]],duplication EIF1AX NA FGF13 NA CosmicCensus, Oncogene Oncogene NA NA NA +X:13790408 X:21602256 GPM6B--CNKSR2 BS_QXKRN6CR ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chrX:7.44Mb]],duplication/5'-5' GPM6B NA CNKSR2 NA NA NA NA NA NA +X:29668504 3:64658791 IL1RAPL1--ADAMTS9 BS_QXKRN6CR ARRIBA in-frame 3 1 high [INTERCHROMOSOMAL[chrX--chr3]],translocation IL1RAPL1 NA ADAMTS9 NA NA TumorSuppressorGene NA NA NA +3:65478592 X:16735227 MAGI1--SYAP1 BS_QXKRN6CR ARRIBA in-frame 16 4 high [INTERCHROMOSOMAL[chr3--chrX]],translocation MAGI1 NA SYAP1 NA NA NA NA NA NA +3:65478592 X:16735227 MAGI1--SYAP1 BS_QXKRN6CR STARFUSION in-frame 22 6 NA [INTERCHROMOSOMAL[chr3--chrX]] MAGI1 NA SYAP1 NA NA NA NA NA NA +11:63839560 3:66879594 MARK2--RPL21P41(242182)/KBTBD8(118713) BS_QXKRN6CR ARRIBA frameshift 6 1 high [],translocation MARK2 NA RPL21P41 KBTBD8 Kinase, Kinase NA NA NA NA +3:48523657 3:64676850 PFKFB4--ADAMTS9 BS_QXKRN6CR ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr3:15.95Mb]],duplication PFKFB4 NA ADAMTS9 NA NA TumorSuppressorGene NA NA NA +3:48523701 X:12452074 PFKFB4--FRMPD4 BS_QXKRN6CR ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr3--chrX]],translocation PFKFB4 NA FRMPD4 NA NA NA NA NA NA +X:141118025 2:231455922 RNU6-3P--SNORA75 BS_QXKRN6CR STARFUSION other 6 0 NA [INTERCHROMOSOMAL[chrX--chr12]] RNU6-3P NA SNORA75 NA NA NA NA NA NA +19:893591 11:62665431 RNU6-9--METTL12 BS_QXKRN6CR ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr19--chr11]],translocation RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893591 11:62665431 RNU6-9--METTL12 BS_QXKRN6CR STARFUSION other 9 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893591 11:62665431 RNU6-9--SNORA57 BS_QXKRN6CR STARFUSION other 9 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QXKRN6CR ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:173573182 1:173598032 SLC9C2--SLC9C2 BS_QXKRN6CR ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.10Mb]],duplication/non-canonical_splicing SLC9C2 NA SLC9C2 NA NA NA NA NA NA +11:64186270 X:103685260 STIP1--MORF4L2 BS_QXKRN6CR ARRIBA frameshift 66 0 high [INTERCHROMOSOMAL[chr11--chrX]],translocation STIP1 NA MORF4L2 NA NA NA NA NA NA +11:64186270 X:103685260 STIP1--MORF4L2 BS_QXKRN6CR STARFUSION other 67 0 NA [INTERCHROMOSOMAL[chr11--chrX]] STIP1 NA MORF4L2 NA NA NA NA NA NA +10:131260259 10:131309299 TCERG1L--TCERG1L BS_QXKRN6CR ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA +X:145828019 X:135994786 TMEM257--SLC9A6 BS_QXKRN6CR ARRIBA in-frame 1 1 high [INTRACHROMOSOMAL[chrX:9.78Mb]],duplication TMEM257 NA SLC9A6 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_QYPHA40N ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_QYPHA40N ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +21:46221852 16:1768476 LSS--MAPK8IP3 BS_QYPHA40N ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr21--chr16]],translocation LSS NA MAPK8IP3 NA NA NA NA NA NA +17:57529724 17:80306252 MSI2--RNF213 BS_QYPHA40N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:22.58Mb]],deletion MSI2 NA RNF213 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_QYPHA40N ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:61470650 2:3214248 USP34--EIPR1 BS_QYPHA40N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:57.81Mb]],deletion USP34 NA EIPR1 NA NA NA NA NA NA +7:128866830 7:128865377 AC025594.2--ATP6V1F BS_QZFEB94Q ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_REARRANGEMENT:+:[464]],duplication AC025594.2 NA ATP6V1F NA NA NA NA NA NA +1:1789053 12:907847 GNB1--WNK1 BS_QZFEB94Q ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr1--chr12]],translocation GNB1 NA WNK1 NA NA Kinase, Kinase NA NA NA +12:112419125 12:104325337 PTPN11--TXNRD1 BS_QZFEB94Q ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:8.07Mb]],duplication PTPN11 NA TXNRD1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +12:112419125 12:104339139 PTPN11--TXNRD1 BS_QZFEB94Q ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:8.07Mb]],duplication PTPN11 NA TXNRD1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +14:49862572 17:50186333 RN7SL2--COL1A1 BS_QZFEB94Q STARFUSION other 4 11 NA [INTERCHROMOSOMAL[chr14--chr17]] RN7SL2 NA COL1A1 NA NA CosmicCensus, Oncogene NA NA NA +14:49862573 17:50201580 RN7SL2--COL1A1 BS_QZFEB94Q STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr14--chr17]] RN7SL2 NA COL1A1 NA NA CosmicCensus, Oncogene NA NA NA +6:52995909 14:49862666 7SK--RN7SL2 BS_R13X6TMW STARFUSION other 9 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995778 14:49862667 7SK--RN7SL2 BS_R13X6TMW STARFUSION other 6 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995823 14:49862667 7SK--RN7SL2 BS_R13X6TMW STARFUSION other 5 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995911 14:49862672 7SK--RN7SL2 BS_R13X6TMW STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995859 14:49862658 7SK--RN7SL2 BS_R13X6TMW STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995907 14:49862842 7SK--RN7SL2 BS_R13X6TMW STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995861 14:49862674 7SK--RN7SL2 BS_R13X6TMW STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995855 14:49862840 7SK--RN7SL2 BS_R13X6TMW STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995905 14:49862689 7SK--RN7SL2 BS_R13X6TMW STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995915 14:49862665 7SK--RN7SL2 BS_R13X6TMW STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995808 14:49862667 7SK--RN7SL2 BS_R13X6TMW STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_R13X6TMW ARRIBA other 12 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_R13X6TMW ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +12:32306122 12:32305697 BICD1--BICD1 BS_R13X6TMW ARRIBA in-frame 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing BICD1 NA BICD1 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_R13X6TMW ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_R13X6TMW ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_R13X6TMW ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_R13X6TMW ARRIBA other 12 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_R244Z0WX ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_R244Z0WX ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:48809641 2:48809118 AC009975.1--ELOBP3(28223)/AC009975.1(222) BS_R244Z0WX ARRIBA other 2 0 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA +1:102913637 1:103025613 COL11A1--COL11A1 BS_R244Z0WX ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing COL11A1 NA COL11A1 NA Oncogene Oncogene NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_R244Z0WX ARRIBA other 5 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_R244Z0WX ARRIBA in-frame 2 0 medium [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_R244Z0WX ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_R439VVPK ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +8:130167536 8:48199201 ASAP1--AC104989.1(4574)/AC105029.1(94825) BS_R439VVPK ARRIBA frameshift 18 1 high [],deletion ASAP1 NA AC104989.1 AC105029.1 NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_R439VVPK ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +8:47913901 8:6981915 PRKDC--DEFA1(1835)/DEFT1P(5263) BS_R439VVPK ARRIBA frameshift 17 0 medium [],deletion PRKDC NA DEFA1 DEFT1P Kinase NA NA NA NA +8:127890998 8:82603527 PVT1--AC060765.1 BS_R439VVPK ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr8:45.12Mb]],duplication/5'-5' PVT1 NA AC060765.1 NA Oncogene NA NA NA NA +8:69831767 8:53646705 SLCO5A1--AC022034.1(106405)/AC103778.1(65992) BS_R439VVPK ARRIBA frameshift 2 2 high [],inversion SLCO5A1 NA AC022034.1 AC103778.1 NA NA NA NA NA +8:69831767 8:53609176 SLCO5A1--AC022034.1(68876)/AC103778.1(103521) BS_R439VVPK ARRIBA frameshift 3 0 medium [],deletion SLCO5A1 NA AC022034.1 AC103778.1 NA NA NA NA NA +8:69831767 8:53729234 SLCO5A1--ATP6V1H BS_R439VVPK ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr8:15.82Mb]],inversion/5'-5' SLCO5A1 NA ATP6V1H NA NA NA NA NA NA +8:38820635 8:34133589 TACC1--AF279873.3(94581)/AC087855.2(41297) BS_R439VVPK ARRIBA frameshift 2 1 high [],duplication TACC1 NA AF279873.3 AC087855.2 Oncogene NA NA NA NA +8:31147476 8:125855894 WRN--AC016074.1(105653)/RNU6-442P(45057) BS_R439VVPK ARRIBA frameshift 4 0 high [],inversion WRN NA AC016074.1 RNU6-442P CosmicCensus, Oncogene NA NA NA NA +8:31147476 8:125855894 WRN--AC016074.1(105653)/RNU6-442P(45057) BS_R439VVPK ARRIBA frameshift 2 0 medium [],inversion WRN NA AC016074.1 RNU6-442P CosmicCensus, Oncogene NA NA NA NA +8:134608729 8:31150341 ZFAT--WRN BS_R439VVPK ARRIBA in-frame 4 1 high [INTRACHROMOSOMAL[chr8:103.30Mb]],inversion ZFAT NA WRN NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA +10:79139777 10:111310988 ZMIZ1--AL355863.1(205740)/BTBD7P2(11790) BS_R439VVPK ARRIBA other 3 0 medium [],deletion ZMIZ1 NA AL355863.1 BTBD7P2 Oncogene NA NA NA NA +22:29287134 11:128805366 EWSR1--FLI1 BS_R4Y180DM ARRIBA in-frame 18 6 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +22:29287134 11:128805366 EWSR1--FLI1 BS_R4Y180DM STARFUSION in-frame 19 6 NA [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]] EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +14:75281014 1:8007662 FOS--ERRFI1 BS_R4Y180DM ARRIBA frameshift 108 0 medium [INTERCHROMOSOMAL[chr14--chr1]],translocation FOS NA ERRFI1 NA Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene NA NA NA +6:99425898 6:109732637 AL513550.1--FIG4 BS_R5SNFB5B ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr6:10.26Mb]],deletion AL513550.1 NA FIG4 NA NA NA NA NA NA +6:99425898 6:109727109 AL513550.1--FIG4 BS_R5SNFB5B ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr6:10.26Mb]],deletion AL513550.1 NA FIG4 NA NA NA NA NA NA +9:34568897 10:78004888 CNTFR--POLR3A BS_R5SNFB5B ARRIBA in-frame 8 0 high [INTERCHROMOSOMAL[chr9--chr10]],translocation CNTFR NA POLR3A NA NA NA NA NA NA +12:107022084 6:103965039 CRY1--SNORA33(381771)/R3HDM2P2(52594) BS_R5SNFB5B ARRIBA frameshift 4 0 high [],translocation CRY1 NA SNORA33 R3HDM2P2 NA NA NA NA NA +4:44704343 4:33721309 GNPDA2--AC097535.1(283432)/AC016687.3(55038) BS_R5SNFB5B ARRIBA other 6 0 medium [],inversion GNPDA2 NA AC097535.1 AC016687.3 NA NA NA NA NA +17:2400640 8:47778434 MNT--PRKDC BS_R5SNFB5B ARRIBA frameshift 11 2 high [INTERCHROMOSOMAL[chr17--chr8]],translocation/5'-5' MNT NA PRKDC NA TumorSuppressorGene, TranscriptionFactor Kinase NA NA NA +13:35110978 15:20646463 NBEA--AC023310.4(3015)/NBEAP1(11175) BS_R5SNFB5B ARRIBA frameshift 3 0 medium [],translocation NBEA NA AC023310.4 NBEAP1 CosmicCensus NA NA Oncogene NA +17:59070823 17:57386377 TRIM37--MSI2 BS_R5SNFB5B ARRIBA frameshift 8 0 high [CCLE,INTRACHROMOSOMAL[chr17:1.30Mb]],deletion/5'-5' TRIM37 NA MSI2 NA Oncogene CosmicCensus, Oncogene NA NA TCGAFusion +16:29082041 4:113174416 AC009093.3--ANK2 BS_R634WKN7 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_R634WKN7 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +X:36205110 X:36179345 CFAP47--CFAP47 BS_R634WKN7 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +22:31495983 17:27212658 EIF4ENIF1--AC069061.4(128622)/AC129926.1(25201) BS_R634WKN7 ARRIBA other 3 0 low [],translocation EIF4ENIF1 NA AC069061.4 AC129926.1 NA NA NA NA NA +12:49297577 12:49284123 PRPH--TUBA1C(9520)/AC125611.4(8508) BS_R634WKN7 ARRIBA frameshift 6 0 high [],duplication PRPH NA TUBA1C AC125611.4 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_R634WKN7 ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:6510500 15:65304697 AC006064.5--RNU5B-1 BS_R6WNEEE4 STARFUSION other 24 0 NA [INTERCHROMOSOMAL[chr12--chr15]] AC006064.5 NA RNU5B-1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_R6WNEEE4 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_R6WNEEE4 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_R6WNEEE4 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +X:107565066 X:107033292 FRMPD3--EEF1A1P40(472)/RBM41(31128) BS_R6WNEEE4 ARRIBA frameshift 10 0 high [],duplication FRMPD3 NA EEF1A1P40 RBM41 NA NA NA NA NA +X:107565066 X:107010668 FRMPD3--MORC4(10424)/EEF1A1P40(21580) BS_R6WNEEE4 ARRIBA frameshift 4 0 medium [],duplication FRMPD3 NA MORC4 EEF1A1P40 NA NA NA NA NA +2:149486345 2:149449049 LYPD6(12197)/MMADHC(83289)--LYPD6 BS_R6WNEEE4 ARRIBA other 2 1 high [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_R6WNEEE4 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:6510500 15:65304697 SCARNA10--RNU5B-1 BS_R6WNEEE4 ARRIBA other 17 0 low [INTERCHROMOSOMAL[chr12--chr15]],translocation SCARNA10 NA RNU5B-1 NA NA NA NA NA NA +12:6510500 15:65304697 SCARNA10--RNU5B-1 BS_R6WNEEE4 STARFUSION other 24 0 NA [INTERCHROMOSOMAL[chr12--chr15]] SCARNA10 NA RNU5B-1 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_R6WNEEE4 ARRIBA other 16 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_R6WNEEE4 ARRIBA other 3 0 medium [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +5:131489546 5:131521521 AC008695.1--RAPGEF6 BS_R7HZCZ8B ARRIBA frameshift 4 0 medium [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA +5:131489546 5:131562047 AC008695.1--RAPGEF6 BS_R7HZCZ8B ARRIBA frameshift 1 0 low [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA +5:131453054 5:131521521 AC008695.1--RAPGEF6 BS_R7HZCZ8B ARRIBA frameshift 1 0 low [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA +5:131592383 5:131604693 AC008695.1--RAPGEF6 BS_R7HZCZ8B ARRIBA frameshift 1 0 low [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA +5:131521390 5:131548190 AC008695.1--RAPGEF6 BS_R7HZCZ8B ARRIBA in-frame 1 0 low [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA +5:131504626 5:131521521 AC008695.1--RAPGEF6 BS_R7HZCZ8B ARRIBA in-frame 1 0 low [],duplication AC008695.1 NA RAPGEF6 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_R7HZCZ8B ARRIBA other 136 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_R7HZCZ8B ARRIBA other 136 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93656437 15:93557472 AC110023.1--AC091078.1 BS_R7HZCZ8B ARRIBA other 2 0 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_R7HZCZ8B ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_R7HZCZ8B ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_R7HZCZ8B ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_R7HZCZ8B ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +17:56374714 17:56326221 ANKFN1--ANKFN1 BS_R7HZCZ8B ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.63Mb]],duplication/non-canonical_splicing ANKFN1 NA ANKFN1 NA NA NA NA NA NA +18:79307234 18:79193183 ATP9B--ATP9B BS_R7HZCZ8B ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +7:33641037 7:33604865 BBS9(34969)/AC008080.1(84944)--BBS9 BS_R7HZCZ8B ARRIBA other 1 0 low [],duplication BBS9 AC008080.1 BBS9 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_R7HZCZ8B ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_R7HZCZ8B ARRIBA in-frame 12 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +14:53058477 14:53091932 DDHD1--DDHD1 BS_R7HZCZ8B ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing DDHD1 NA DDHD1 NA NA NA NA NA NA +17:11883750 17:11880078 DNAH9--DNAH9 BS_R7HZCZ8B ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.37Mb]],duplication/non-canonical_splicing DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_R7HZCZ8B ARRIBA in-frame 16 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_R7HZCZ8B ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +12:13753317 12:13753915 GRIN2B--GRIN2B BS_R7HZCZ8B ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.54Mb]],duplication/non-canonical_splicing GRIN2B NA GRIN2B NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_R7HZCZ8B ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_R7HZCZ8B ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_R7HZCZ8B ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:210920069 KCNH1--AL590132.1 BS_R7HZCZ8B ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_R7HZCZ8B ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_R7HZCZ8B ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_R7HZCZ8B ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_R7HZCZ8B ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_R7HZCZ8B ARRIBA frameshift 25 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +8:89596419 8:89629271 KRT8P4(181348)/AF117829.1(12990)--AF117829.1 BS_R7HZCZ8B ARRIBA other 1 0 low [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +8:89418044 8:89725641 KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_R7HZCZ8B ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +21:32573284 21:32587477 LINC00846--AP000275.2 BS_R7HZCZ8B ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr21:0.00Mb],LOCAL_REARRANGEMENT:-:[2941]],duplication LINC00846 NA AP000275.2 NA NA NA NA NA NA +13:108898133 13:108883059 MYO16--MYO16 BS_R7HZCZ8B ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +2:1839149 2:1892287 MYT1L--MYT1L BS_R7HZCZ8B ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_R7HZCZ8B ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +5:131489546 5:131521521 RAPGEF6--AC008695.1 BS_R7HZCZ8B ARRIBA frameshift 4 0 medium [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA +5:131504626 5:131521521 RAPGEF6--AC008695.1 BS_R7HZCZ8B ARRIBA in-frame 1 0 low [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA +5:131453054 5:131521521 RAPGEF6--AC008695.1 BS_R7HZCZ8B ARRIBA frameshift 1 0 low [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA +5:131521390 5:131548190 RAPGEF6--AC008695.1 BS_R7HZCZ8B ARRIBA in-frame 1 0 low [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA +5:131489546 5:131562047 RAPGEF6--AC008695.1 BS_R7HZCZ8B ARRIBA frameshift 1 0 low [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA +5:131592383 5:131604693 RAPGEF6--AC008695.1 BS_R7HZCZ8B ARRIBA frameshift 1 0 low [],duplication RAPGEF6 NA AC008695.1 NA NA NA NA NA NA +5:131489546 5:131521521 RAPGEF6--RAPGEF6 BS_R7HZCZ8B ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.21Mb]],duplication/non-canonical_splicing RAPGEF6 NA RAPGEF6 NA NA NA NA NA NA +14:49586854 6:52995635 RN7SL1--RN7SK BS_R7HZCZ8B STARFUSION other 5 9 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL1 NA RN7SK NA NA NA NA NA NA +3:77602491 3:77564954 ROBO2--ROBO2 BS_R7HZCZ8B ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_R7HZCZ8B ARRIBA other 136 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +X:19607938 X:19687691 SH3KBP1--SH3KBP1 BS_R7HZCZ8B ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.35Mb]],duplication/non-canonical_splicing SH3KBP1 NA SH3KBP1 NA NA NA NA NA NA +15:92128489 15:92094881 SLCO3A1--SLCO3A1 BS_R7HZCZ8B ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.32Mb]],duplication/non-canonical_splicing SLCO3A1 NA SLCO3A1 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_R7HZCZ8B ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +3:167554683 3:167658326 WDR49--WDR49(4343)/PDCD10(24972) BS_R7HZCZ8B ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_RB2S0KDF ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_RB2S0KDF ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:91118208 7:92433244 CDK14--TMBIM7P BS_RB2S0KDF ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:1.20Mb]],deletion/5'-5' CDK14 NA TMBIM7P NA Kinase NA NA NA NA +7:137901354 7:90692223 CREB3L2--CDK14 BS_RB2S0KDF ARRIBA frameshift 56 1 high [INTRACHROMOSOMAL[chr7:46.66Mb]],deletion/5'-5' CREB3L2 NA CDK14 NA CosmicCensus, Oncogene, TranscriptionFactor Kinase NA NA NA +14:39348977 14:36454029 CTAGE5--AL132857.2 BS_RB2S0KDF ARRIBA frameshift 13 0 high [INTRACHROMOSOMAL[chr14:2.57Mb]],inversion/3'-3' CTAGE5 NA AL132857.2 NA NA NA NA NA NA +7:14718541 7:156236011 DGKB--Y_RNA(49788)/AC093813.1(27536) BS_RB2S0KDF ARRIBA frameshift 2 0 medium [],inversion DGKB NA Y_RNA AC093813.1 Kinase NA NA NA NA +1:149607554 1:120556551 LINC00869--AC241952.1 BS_RB2S0KDF ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:28.91Mb]],duplication/5'-5' LINC00869 NA AC241952.1 NA NA NA NA NA NA +7:158675477 7:90726567 NCAPG2--CDK14 BS_RB2S0KDF ARRIBA in-frame 2 2 high [INTRACHROMOSOMAL[chr7:67.42Mb]],inversion NCAPG2 NA CDK14 NA NA Kinase NA NA NA +12:124437930 12:124817707 NCOR2--SCARB1 BS_RB2S0KDF ARRIBA in-frame 1 0 low [YOSHIHARA_TCGA,FA_CancerSupp,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr12:0.21Mb]],duplication NCOR2 NA SCARB1 NA CosmicCensus, Oncogene Oncogene NA NA TCGAFusion +18:9722863 18:2743761 RAB31--SMCHD1 BS_RB2S0KDF ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr18:6.90Mb]],duplication RAB31 NA SMCHD1 NA NA TumorSuppressorGene NA NA NA +2:33539556 2:33542811 RASGRP3--RASGRP3 BS_RB2S0KDF ARRIBA other 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.13Mb]],inversion/3'-3' RASGRP3 NA RASGRP3 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_RB2S0KDF ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:105268806 7:103278346 SRPK2--DPY19L2P2 BS_RB2S0KDF ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr7:1.83Mb]],deletion SRPK2 NA DPY19L2P2 NA Kinase, Oncogene, Kinase NA NA NA NA +7:105268806 7:103257724 SRPK2--DPY19L2P2 BS_RB2S0KDF ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:1.83Mb]],deletion SRPK2 NA DPY19L2P2 NA Kinase, Oncogene, Kinase NA NA NA NA +7:105268806 7:103277638 SRPK2--DPY19L2P2 BS_RB2S0KDF ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:1.83Mb]],deletion SRPK2 NA DPY19L2P2 NA Kinase, Oncogene, Kinase NA NA NA NA +7:105388648 7:123868223 SRPK2--HYAL4 BS_RB2S0KDF ARRIBA frameshift 16 1 high [INTRACHROMOSOMAL[chr7:18.43Mb]],inversion SRPK2 NA HYAL4 NA Kinase, Oncogene, Kinase NA NA NA NA +7:105388648 7:123868223 SRPK2--HYAL4 BS_RB2S0KDF STARFUSION other 16 1 NA [INTRACHROMOSOMAL[chr7:18.43Mb]] SRPK2 NA HYAL4 NA Kinase, Oncogene, Kinase NA NA NA NA +7:65873565 7:79652499 VKORC1L1--NUP35P2(107646)/RNA5SP234(1610) BS_RB2S0KDF ARRIBA frameshift 2 0 medium [],deletion VKORC1L1 NA NUP35P2 RNA5SP234 NA NA NA NA NA +7:65873565 7:79655716 VKORC1L1--RNA5SP234(1489)/RNU6-849P(256388) BS_RB2S0KDF ARRIBA frameshift 2 0 medium [],deletion VKORC1L1 NA RNA5SP234 RNU6-849P NA NA NA NA NA +7:151395776 7:122295713 WDR86--AC015983.1(60810)/FEZF1(5681) BS_RB2S0KDF ARRIBA frameshift 11 0 high [],inversion WDR86 NA AC015983.1 FEZF1 NA NA NA TranscriptionFactor NA +6:52995910 14:20343378 7SK--AL355075.4 BS_RCC8BXVE STARFUSION other 6 15 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL355075.4 NA NA NA NA NA NA +6:52995910 14:20343378 7SK--RPPH1 BS_RCC8BXVE STARFUSION other 6 15 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_RCC8BXVE ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_RCC8BXVE ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_RCC8BXVE ARRIBA other 2 0 low [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_RCC8BXVE ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:100578551 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_RCC8BXVE ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_RCC8BXVE ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_RCC8BXVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100561397 CAVIN4--TMEFF1 BS_RCC8BXVE ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_RCC8BXVE ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_RCC8BXVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +10:12998338 10:13074100 CCDC3--CCDC3 BS_RCC8BXVE ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_RCC8BXVE ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_RCC8BXVE ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +15:21617244 15:21595606 LINC02203--LINC02203 BS_RCC8BXVE ARRIBA other 18 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.10Mb]],duplication/non-canonical_splicing LINC02203 NA LINC02203 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_RCC8BXVE ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_RCC8BXVE ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +22:11971940 1:3638822 5_8S_rRNA(721981)/AC116618.1(630526)--WRAP73 BS_RCCN63K6 ARRIBA other 3 0 medium [],translocation 5_8S_rRNA AC116618.1 WRAP73 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_RCCN63K6 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_RCCN63K6 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:44958062 17:47650386 AC015936.1(9123)/C1QL1(1631)--KPNB1 BS_RCCN63K6 ARRIBA other 4 1 medium [],deletion AC015936.1 C1QL1 KPNB1 NA NA NA NA NA NA +1:35902337 6:41508207 AGO1--FOXP4-AS1 BS_RCCN63K6 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr1--chr6]],translocation/5'-5' AGO1 NA FOXP4-AS1 NA NA NA NA NA NA +1:35902337 6:41508207 AGO1--LINC01276 BS_RCCN63K6 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr1--chr6]],translocation AGO1 NA LINC01276 NA NA NA NA NA NA +1:35902337 6:41519376 AGO1--LINC01276 BS_RCCN63K6 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr1--chr6]],translocation AGO1 NA LINC01276 NA NA NA NA NA NA +1:38047614 1:64641820 AL139158.2--CACHD1 BS_RCCN63K6 ARRIBA other 8 0 high [INTRACHROMOSOMAL[chr1:26.35Mb]],deletion AL139158.2 NA CACHD1 NA NA NA NA NA NA +1:65066628 1:26950756 AL357078.1--KDF1 BS_RCCN63K6 ARRIBA other 11 1 high [INTRACHROMOSOMAL[chr1:38.11Mb]],deletion AL357078.1 NA KDF1 NA NA NA NA NA NA +1:65067604 1:26950756 AL357078.1--KDF1 BS_RCCN63K6 ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr1:38.11Mb]],deletion AL357078.1 NA KDF1 NA NA NA NA NA NA +1:65066628 1:26950756 AL357078.1--KDF1 BS_RCCN63K6 STARFUSION other 12 1 NA [INTRACHROMOSOMAL[chr1:38.11Mb]] AL357078.1 NA KDF1 NA NA NA NA NA NA +11:46593828 17:787965 AMBRA1--MRM3 BS_RCCN63K6 ARRIBA other 6 0 high [INTERCHROMOSOMAL[chr11--chr17]],translocation AMBRA1 NA MRM3 NA NA NA NA NA NA +11:46593828 17:791534 AMBRA1--MRM3 BS_RCCN63K6 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr11--chr17]],translocation AMBRA1 NA MRM3 NA NA NA NA NA NA +11:47175182 11:34978124 ARFGAP2--PDHX BS_RCCN63K6 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr11:12.14Mb]],inversion ARFGAP2 NA PDHX NA NA NA NA NA NA +11:47176516 11:34978124 ARFGAP2--PDHX BS_RCCN63K6 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr11:12.14Mb]],inversion ARFGAP2 NA PDHX NA NA NA NA NA NA +11:110690547 11:55231920 ARHGAP20--OR4A6P(506104)/TRIM48(30262) BS_RCCN63K6 ARRIBA frameshift 4 1 high [],deletion ARHGAP20 NA OR4A6P TRIM48 Oncogene NA NA NA NA +12:14481185 4:34610957 ATF7IP--LINC02484(341210)/AC093689.1(46649) BS_RCCN63K6 ARRIBA frameshift 4 0 medium [],translocation ATF7IP NA LINC02484 AC093689.1 Oncogene NA NA NA NA +11:46650317 11:46548500 ATG13--AMBRA1 BS_RCCN63K6 ARRIBA frameshift 6 0 high [CCLE,ChimerSeq,INTRACHROMOSOMAL[chr11:0.02Mb],LOCAL_INVERSION:+:-:[23402]],inversion ATG13 NA AMBRA1 NA NA NA NA NA NA +17:42501304 17:47880847 ATP6V0A1--AC018521.7 BS_RCCN63K6 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr17:5.36Mb]],deletion/5'-5' ATP6V0A1 NA AC018521.7 NA NA NA NA NA NA +16:346148 16:7518147 AXIN1--RBFOX1 BS_RCCN63K6 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr16:4.89Mb]],inversion AXIN1 NA RBFOX1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +1:64641969 1:20294354 CACHD1--AL020998.1 BS_RCCN63K6 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr1:44.15Mb]],inversion CACHD1 NA AL020998.1 NA NA NA NA NA NA +11:46809400 11:24181445 CKAP5--AC099842.1(287888)/AC015771.1(54032) BS_RCCN63K6 ARRIBA frameshift 5 0 high [],inversion CKAP5 NA AC099842.1 AC015771.1 NA NA NA NA NA +11:46809400 11:24209327 CKAP5--AC099842.1(315770)/AC015771.1(26150) BS_RCCN63K6 ARRIBA frameshift 3 0 high [],inversion CKAP5 NA AC099842.1 AC015771.1 NA NA NA NA NA +20:37694152 20:58440907 CTNNBL1--VAPB BS_RCCN63K6 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr20:20.52Mb]],deletion CTNNBL1 NA VAPB NA NA NA NA NA NA +22:11068174 22:10752913 CU104787.1--U2(16630)/CU459211.1(186475) BS_RCCN63K6 ARRIBA other 5 0 medium [],inversion CU104787.1 NA U2 CU459211.1 NA NA NA NA NA +9:121567228 19:6820702 DAB2IP--VAV1 BS_RCCN63K6 ARRIBA frameshift 13 0 high [INTERCHROMOSOMAL[chr9--chr19]],translocation DAB2IP NA VAV1 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA NA +9:121567228 19:6820702 DAB2IP--VAV1 BS_RCCN63K6 STARFUSION frameshift 13 0 NA [INTERCHROMOSOMAL[chr9--chr19]] DAB2IP NA VAV1 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA NA +21:46509376 11:6280546 DIP2A--CCKBR(8419)/AC068733.2(16643) BS_RCCN63K6 ARRIBA frameshift 4 0 high [],translocation DIP2A NA CCKBR AC068733.2 NA NA NA NA NA +1:21345376 1:12135588 ECE1--TNFRSF8 BS_RCCN63K6 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:9.07Mb]],inversion ECE1 NA TNFRSF8 NA NA Oncogene NA NA NA +1:21345376 1:12125951 ECE1--TNFRSF8 BS_RCCN63K6 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:9.07Mb]],inversion ECE1 NA TNFRSF8 NA NA Oncogene NA NA NA +1:21345376 1:12138229 ECE1--TNFRSF8 BS_RCCN63K6 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:9.07Mb]],inversion ECE1 NA TNFRSF8 NA NA Oncogene NA NA NA +12:8227567 1:5565523 FAM90A1--AL365255.1 BS_RCCN63K6 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr12--chr1]],translocation/3'-3' FAM90A1 NA AL365255.1 NA NA NA NA NA NA +12:26938710 4:29503989 FGFR1OP2--AC092593.1(36139)/U6(6646) BS_RCCN63K6 ARRIBA other 13 0 high [],translocation FGFR1OP2 NA AC092593.1 U6 NA NA NA NA NA +12:26938710 4:29503989 FGFR1OP2--AC092593.1(36139)/U6(6646) BS_RCCN63K6 ARRIBA other 2 0 medium [],translocation FGFR1OP2 NA AC092593.1 U6 NA NA NA NA NA +11:33257889 4:60603097 HIPK3--AC097655.1(564511)/LINC02496(147489) BS_RCCN63K6 ARRIBA other 3 0 medium [],translocation HIPK3 NA AC097655.1 LINC02496 Kinase, Kinase NA NA NA NA +11:33257889 4:60659894 HIPK3--AC097655.1(621308)/LINC02496(90692) BS_RCCN63K6 ARRIBA other 3 0 medium [],translocation HIPK3 NA AC097655.1 LINC02496 Kinase, Kinase NA NA NA NA +1:41918413 1:23195001 HIVEP3--HTR1D(272)/AL109936.1(49764) BS_RCCN63K6 ARRIBA other 9 0 medium [],deletion HIVEP3 NA HTR1D AL109936.1 TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA +1:20776597 1:41117010 HP1BP3--SCMH1 BS_RCCN63K6 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:20.24Mb]],duplication HP1BP3 NA SCMH1 NA NA TranscriptionFactor NA NA NA +1:37943640 6:41236486 INPP5B--TREML4 BS_RCCN63K6 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr1--chr6]],translocation INPP5B NA TREML4 NA NA NA NA NA NA +16:19735450 9:73648860 IQCK--AL512594.1 BS_RCCN63K6 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr16--chr9]],translocation IQCK NA AL512594.1 NA NA NA NA NA NA +X:53291895 4:14263972 IQSEC2--AC092546.1(21159)/AC006296.2(119151) BS_RCCN63K6 ARRIBA frameshift 2 0 medium [],translocation IQSEC2 NA AC092546.1 AC006296.2 NA NA NA NA NA +17:50385118 7:148144023 LRRC59--CNTNAP2 BS_RCCN63K6 ARRIBA frameshift 45 0 high [INTERCHROMOSOMAL[chr17--chr7]],translocation/5'-5' LRRC59 NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA +X:10566888 4:15442168 MID1--C1QTNF7 BS_RCCN63K6 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chrX--chr4]],translocation MID1 NA C1QTNF7 NA Oncogene NA NA NA NA +X:10567002 4:15442168 MID1--C1QTNF7 BS_RCCN63K6 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chrX--chr4]],translocation MID1 NA C1QTNF7 NA Oncogene NA NA NA NA +X:10566888 4:15475915 MID1--CC2D2A BS_RCCN63K6 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chrX--chr4]],translocation MID1 NA CC2D2A NA Oncogene NA NA NA NA +1:65066121 1:26950756 MIR101-1(7613)/AL357078.1(506)--KDF1 BS_RCCN63K6 ARRIBA other 4 0 high [],deletion MIR101-1 AL357078.1 KDF1 NA TumorSuppressorGene NA NA NA NA +11:21370948 11:45751208 NELL1--AC044839.2 BS_RCCN63K6 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr11:24.18Mb]],inversion NELL1 NA AC044839.2 NA NA NA NA NA NA +X:55221463 1:4164060 PAGE5--AL805961.2(144552)/EEF1DP6(11468) BS_RCCN63K6 ARRIBA frameshift 8 2 high [],translocation PAGE5 NA AL805961.2 EEF1DP6 NA NA NA NA NA +1:33330071 1:26955178 PHC2--KDF1 BS_RCCN63K6 ARRIBA frameshift 38 2 high [INTRACHROMOSOMAL[chr1:6.36Mb]],inversion/5'-5' PHC2 NA KDF1 NA NA NA NA NA NA +7:102399648 4:21500942 PRKRIP1--KCNIP4 BS_RCCN63K6 ARRIBA frameshift 7 1 high [INTERCHROMOSOMAL[chr7--chr4]],translocation PRKRIP1 NA KCNIP4 NA NA NA NA NA NA +1:35605233 1:62079450 PSMB2--PATJ BS_RCCN63K6 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:26.10Mb]],inversion PSMB2 NA PATJ NA NA Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_RCCN63K6 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:35192517 1:35913842 SFPQ--AGO1 BS_RCCN63K6 ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr1:0.68Mb]],deletion/3'-3' SFPQ NA AGO1 NA CosmicCensus, Oncogene NA NA NA NA +1:43736380 6:41872318 ST3GAL3--USP49 BS_RCCN63K6 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr1--chr6]],translocation/5'-5' ST3GAL3 NA USP49 NA NA NA NA NA NA +11:3967682 3:197142768 STIM1--DLG1 BS_RCCN63K6 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr11--chr3]],translocation STIM1 NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA +11:3967682 3:197149796 STIM1--DLG1 BS_RCCN63K6 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr11--chr3]],translocation STIM1 NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA +11:3967682 3:197161738 STIM1--DLG1 BS_RCCN63K6 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr11--chr3]],translocation STIM1 NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA +20:47757189 20:41205066 SULF2--ZHX3 BS_RCCN63K6 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr20:6.34Mb]],deletion SULF2 NA ZHX3 NA Oncogene TranscriptionFactor NA NA NA +20:47757189 20:41238796 SULF2--ZHX3 BS_RCCN63K6 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr20:6.34Mb]],deletion SULF2 NA ZHX3 NA Oncogene TranscriptionFactor NA NA NA +20:47757189 20:41185201 SULF2--ZHX3 BS_RCCN63K6 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr20:6.34Mb]],deletion SULF2 NA ZHX3 NA Oncogene TranscriptionFactor NA NA NA +21:10543382 21:10485618 TPTE--BAGE2 BS_RCCN63K6 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA +21:10527412 21:10514122 TPTE--BAGE2 BS_RCCN63K6 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA +21:10542448 21:10454134 TPTE--BAGE2 BS_RCCN63K6 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA +21:10527412 21:10454134 TPTE--BAGE2 BS_RCCN63K6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA +10:133302792 10:133395713 TUBGCP2--AL360181.3 BS_RCCN63K6 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr10:0.08Mb],LOCAL_INVERSION:-:+:[78497]],inversion TUBGCP2 NA AL360181.3 NA NA NA NA NA NA +10:133302792 10:133395713 TUBGCP2--MTG1 BS_RCCN63K6 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr10:0.08Mb],LOCAL_INVERSION:-:+:[81757]],inversion TUBGCP2 NA MTG1 NA NA NA NA NA NA +10:133302792 10:133402149 TUBGCP2--MTG1 BS_RCCN63K6 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr10:0.08Mb],LOCAL_INVERSION:-:+:[81757]],inversion TUBGCP2 NA MTG1 NA NA NA NA NA NA +1:11274060 1:58893545 UBIAD1--LINC01135 BS_RCCN63K6 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr1:47.49Mb]],deletion UBIAD1 NA LINC01135 NA TumorSuppressorGene NA NA NA NA +1:11274060 1:58953859 UBIAD1--LINC01358 BS_RCCN63K6 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:47.64Mb]],deletion UBIAD1 NA LINC01358 NA TumorSuppressorGene NA NA NA NA +X:41131536 X:18936150 USP9X--PHKA2 BS_RCCN63K6 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chrX:22.10Mb]],inversion USP9X NA PHKA2 NA NA NA NA NA NA +1:12460396 1:59477607 VPS13D--FGGY BS_RCCN63K6 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr1:46.78Mb]],inversion/3'-3' VPS13D NA FGGY NA NA NA NA NA NA +16:17200482 X:64509209 XYLT1--SHC1P1(75064)/YWHAZP7(103423) BS_RCCN63K6 ARRIBA frameshift 7 0 high [],translocation XYLT1 NA SHC1P1 YWHAZP7 NA NA NA NA NA +1:33276594 1:58714832 ZNF362--MYSM1(14740)/AL136985.3(777) BS_RCCN63K6 ARRIBA frameshift 3 0 medium [],deletion ZNF362 NA MYSM1 AL136985.3 TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_RCFQ31XF ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_RCFQ31XF ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:16426440 4:16238771 AC097515.1--TAPT1-AS1 BS_RCFQ31XF ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16320065 AC097515.1--TAPT1-AS1 BS_RCFQ31XF ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_RCFQ31XF ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_RCFQ31XF ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_RD4D5F9F ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_RD4D5F9F ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_RD4D5F9F ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +6:114540730 6:114371592 AL138830.1(4855)/RNU6-475P(326143)--HDAC2-AS2 BS_RD4D5F9F ARRIBA other 2 1 high [],duplication AL138830.1 RNU6-475P HDAC2-AS2 NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_RD4D5F9F ARRIBA other 2 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_RD4D5F9F ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +2:149486345 2:149449049 LYPD6(12197)/MMADHC(83289)--LYPD6 BS_RD4D5F9F ARRIBA other 4 0 high [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_RD4D5F9F ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_RD4D5F9F ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_RD4D5F9F ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +15:56412436 15:56389318 TEX9--TEX9 BS_RD4D5F9F ARRIBA in-frame 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.20Mb]],duplication/non-canonical_splicing TEX9 NA TEX9 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_RFMQ7T0T ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_RFMQ7T0T ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:34916589 14:34921713 AL121603.2(40130)/SRP54-AS1(4269)--SRP54-AS1 BS_RFMQ7T0T ARRIBA other 1 0 low [],duplication AL121603.2 SRP54-AS1 SRP54-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_RFMQ7T0T ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_RGPSEMHC ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_RGPSEMHC ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_RGPSEMHC ARRIBA other 2 0 low [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_RGPSEMHC STARFUSION other 4 9 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_RGPSEMHC ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:197397985 2:197542363 SF3B1--HSPE1-MOB4 BS_RGPSEMHC ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:0.07Mb],LOCAL_INVERSION:-:+:[65322]],duplication/5'-5' SF3B1 NA HSPE1-MOB4 NA CosmicCensus, Oncogene NA NA NA NA +2:197397985 2:197542363 SF3B1--MOB4 BS_RGPSEMHC ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:0.08Mb],LOCAL_INVERSION:-:+:[80480]],duplication/5'-5' SF3B1 NA MOB4 NA CosmicCensus, Oncogene NA NA NA NA +10:17229391 14:49586588 VIM-AS1--AL139099.5 BS_RGPSEMHC STARFUSION other 16 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA AL139099.5 NA NA NA NA NA NA +10:17229380 14:49586598 VIM-AS1--AL139099.5 BS_RGPSEMHC STARFUSION other 8 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA AL139099.5 NA NA NA NA NA NA +10:17229391 14:49586588 VIM-AS1--RN7SL1 BS_RGPSEMHC STARFUSION other 16 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA RN7SL1 NA NA NA NA NA NA +10:17229380 14:49586598 VIM-AS1--RN7SL1 BS_RGPSEMHC STARFUSION other 8 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_RGSMX7QD ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_RGSMX7QD ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:53205080 19:53179469 AC092070.2--ZNF665 BS_RGSMX7QD ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_INVERSION:+:-:[3725]],duplication/5'-5' AC092070.2 NA ZNF665 NA NA TranscriptionFactor NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_RGSMX7QD ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +17:7656768 14:49862818 ATP1B2--RN7SL2 BS_RGSMX7QD STARFUSION other 13 2 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_RGSMX7QD STARFUSION other 12 6 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +14:59456438 14:59543454 GPR135--CCDC175 BS_RGSMX7QD ARRIBA other 2 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_RGSMX7QD ARRIBA in-frame 10 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_RGSMX7QD ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:72236769 16:72308188 AC009075.1(11625)/AC009075.2(41499)--LINC01572 BS_RHD7XPNP ARRIBA other 2 1 medium [],duplication AC009075.1 AC009075.2 LINC01572 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_RHD7XPNP ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_RHD7XPNP ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:199070153 2:198579708 AC020718.1--AC019330.1 BS_RHD7XPNP ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_RHD7XPNP ARRIBA other 10 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +4:16426440 4:16238771 AC097515.1--TAPT1-AS1 BS_RHD7XPNP ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16320065 AC097515.1--TAPT1-AS1 BS_RHD7XPNP ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_RHD7XPNP ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_RHD7XPNP ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +16:77297289 16:77335904 ADAMTS18--ADAMTS18 BS_RHD7XPNP ARRIBA frameshift 4 3 low [SELFIE,INTRACHROMOSOMAL[chr16:0.19Mb]],duplication/non-canonical_splicing ADAMTS18 NA ADAMTS18 NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_RHD7XPNP ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +10:47542167 10:46932377 BMS1P2--PTPN20 BS_RHD7XPNP ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr10:0.54Mb]],inversion BMS1P2 NA PTPN20 NA NA NA NA NA NA +10:47542167 10:46940623 BMS1P2--PTPN20 BS_RHD7XPNP ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr10:0.54Mb]],inversion BMS1P2 NA PTPN20 NA NA NA NA NA NA +20:54610523 20:54554933 DOK5--DOK5 BS_RHD7XPNP ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA +1:15369502 1:15367463 FHAD1--FHAD1 BS_RHD7XPNP ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA +4:161455004 4:161500134 FSTL5--FSTL5 BS_RHD7XPNP ARRIBA frameshift 39 3 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_RHD7XPNP ARRIBA other 5 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +11:33552241 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_RHD7XPNP ARRIBA frameshift 3 1 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +X:70387297 X:70341799 KIF4A--KIF4A BS_RHD7XPNP ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.13Mb]],duplication/non-canonical_splicing KIF4A NA KIF4A NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_RHD7XPNP ARRIBA frameshift 10 2 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_RHD7XPNP ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +X:24575130 X:24619084 PCYT1B--PCYT1B BS_RHD7XPNP ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.11Mb]],duplication/non-canonical_splicing PCYT1B NA PCYT1B NA NA NA NA NA NA +2:45652448 2:45193824 PRKCE--LINC01121 BS_RHD7XPNP ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/5'-5' PRKCE NA LINC01121 NA TumorSuppressorGene, Kinase NA NA NA NA +12:80510443 12:80443752 PTPRQ--PTPRQ BS_RHD7XPNP ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRQ NA PTPRQ NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_RHD7XPNP ARRIBA other 34 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_RHD7XPNP ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +4:16323036 4:16256257 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_RHD7XPNP ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_RHD7XPNP ARRIBA other 5 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:43397971 2:43527988 THADA--THADA BS_RHD7XPNP ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.37Mb]],duplication/non-canonical_splicing THADA NA THADA NA Oncogene Oncogene NA NA NA +2:119685754 2:119604672 TMEM177--CFAP221 BS_RHD7XPNP ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:+:[16916]],duplication TMEM177 NA CFAP221 NA NA NA NA NA NA +5:110387266 5:110424916 TMEM232--TMEM232 BS_RHD7XPNP ARRIBA other 5 2 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA +8:93822563 8:93799618 TMEM67(3329)/AC084346.1(11891)--TMEM67 BS_RHD7XPNP ARRIBA other 2 0 low [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_RHD7XPNP ARRIBA in-frame 12 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +5:83258677 5:83104910 XRCC4--XRCC4 BS_RHD7XPNP ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.28Mb]],duplication/non-canonical_splicing XRCC4 NA XRCC4 NA NA NA NA NA NA +17:39463117 17:69125035 CDK12--ABCA6 BS_RQSKD7PN ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr17:29.51Mb]],inversion CDK12 NA ABCA6 NA CosmicCensus, Kinase NA NA NA NA +4:122876424 11:98866597 FGF2--AP003715.1(182862)/AP002428.1(72315) BS_RQSKD7PN ARRIBA frameshift 11 2 high [],translocation FGF2 NA AP003715.1 AP002428.1 Oncogene NA NA NA NA +4:122876424 11:98898560 FGF2--AP003715.1(214825)/AP002428.1(40352) BS_RQSKD7PN ARRIBA frameshift 3 0 medium [],translocation FGF2 NA AP003715.1 AP002428.1 Oncogene NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_RQSKD7PN ARRIBA other 3 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +13:81043787 13:81008517 LINC00377--ARF4P4(119650)/LINC00377(35153) BS_RQSKD7PN ARRIBA other 7 0 medium [],duplication LINC00377 NA ARF4P4 LINC00377 NA NA NA NA NA +20:7983794 20:8213165 TMX4--PLCB1 BS_RQSKD7PN ARRIBA frameshift 12 1 high [INTRACHROMOSOMAL[chr20:0.06Mb],LOCAL_INVERSION:-:+:[57422]],duplication/5'-5' TMX4 NA PLCB1 NA NA Oncogene NA NA NA +2:111344061 2:87125198 MIR4435-2HG--AC083899.1 BS_RR12T74P ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr2:24.00Mb]],inversion MIR4435-2HG NA AC083899.1 NA NA NA NA NA NA +13:101345300 13:101378652 NALCN--NALCN BS_RR12T74P ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.36Mb]],duplication/non-canonical_splicing NALCN NA NALCN NA NA NA NA NA NA +2:167490277 2:71598564 AC073050.1--DYSF BS_RRAEQZ97 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr2:95.61Mb]],duplication AC073050.1 NA DYSF NA NA NA NA NA NA +2:227523925 2:25806337 AGFG1--ASXL2 BS_RRAEQZ97 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:201.59Mb]],inversion AGFG1 NA ASXL2 NA NA CosmicCensus NA NA NA +2:201725415 2:63732443 ALS2--WDPCP BS_RRAEQZ97 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:137.87Mb]],inversion/5'-5' ALS2 NA WDPCP NA NA NA NA NA NA +2:69090919 2:218662197 ANTXR1--BCS1L BS_RRAEQZ97 ARRIBA in-frame 9 2 medium [INTRACHROMOSOMAL[chr2:149.41Mb]],deletion ANTXR1 NA BCS1L NA NA NA NA NA NA +2:25878166 2:228326069 ASXL2--SPHKAP(144424)/AC074019.1(26051) BS_RRAEQZ97 ARRIBA frameshift 3 0 high [],duplication ASXL2 NA SPHKAP AC074019.1 CosmicCensus NA NA NA NA +2:111150147 2:237182138 BCL2L11--AC107079.1(58041)/AC112715.1(74953) BS_RRAEQZ97 ARRIBA frameshift 4 0 high [],inversion BCL2L11 NA AC107079.1 AC112715.1 TumorSuppressorGene, Oncogene NA NA NA NA +2:127106860 2:15277101 BIN1--NBAS BS_RRAEQZ97 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr2:111.49Mb]],deletion BIN1 NA NBAS NA TumorSuppressorGene, Oncogene NA NA NA NA +2:197756428 2:114667973 BOLL--DPP10 BS_RRAEQZ97 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr2:81.88Mb]],inversion BOLL NA DPP10 NA NA NA NA NA NA +2:200811990 2:106844034 BZW1--ST6GAL2 BS_RRAEQZ97 ARRIBA other 14 0 medium [INTRACHROMOSOMAL[chr2:93.92Mb]],inversion BZW1 NA ST6GAL2 NA NA NA NA NA NA +2:200811946 2:106844034 BZW1--ST6GAL2 BS_RRAEQZ97 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:93.92Mb]],inversion BZW1 NA ST6GAL2 NA NA NA NA NA NA +2:200811990 2:106844034 BZW1--ST6GAL2 BS_RRAEQZ97 STARFUSION other 14 0 NA [INTRACHROMOSOMAL[chr2:93.92Mb]] BZW1 NA ST6GAL2 NA NA NA NA NA NA +2:231041409 2:123669495 C2orf72--AC073409.1(225050)/AC092646.2(25807) BS_RRAEQZ97 ARRIBA frameshift 4 0 high [],inversion C2orf72 NA AC073409.1 AC092646.2 NA NA NA NA NA +2:190181109 2:70085624 C2orf88--PCBP1-AS1 BS_RRAEQZ97 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr2:119.78Mb]],inversion C2orf88 NA PCBP1-AS1 NA NA NA NA NA NA +2:121605701 2:68174735 CLASP1--PNO1 BS_RRAEQZ97 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:53.16Mb]],inversion CLASP1 NA PNO1 NA NA NA NA NA NA +2:96761734 2:12200502 CNNM4--MIR3681HG BS_RRAEQZ97 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr2:84.18Mb]],inversion/3'-3' CNNM4 NA MIR3681HG NA Oncogene NA NA NA NA +2:124025732 2:669850 CNTNAP5--TMEM18 BS_RRAEQZ97 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr2:123.35Mb]],inversion CNTNAP5 NA TMEM18 NA NA NA NA NA NA +2:171453213 2:99364271 DCAF17--EIF5B BS_RRAEQZ97 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr2:72.03Mb]],duplication DCAF17 NA EIF5B NA NA NA NA NA NA +2:74365075 2:29223528 DCTN1--ALK BS_RRAEQZ97 ARRIBA in-frame 3 0 medium [ChimerPub,Cosmic,ChimerKB,ChimerSeq,INTRACHROMOSOMAL[chr2:44.44Mb]],deletion DCTN1 NA ALK NA CosmicCensus Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:224916695 2:153880949 DOCK10--GALNT13 BS_RRAEQZ97 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr2:70.31Mb]],deletion/5'-5' DOCK10 NA GALNT13 NA NA NA NA NA NA +2:62831158 2:9712204 EHBP1--AC082651.4(3791)/RNU4-73P(28439) BS_RRAEQZ97 ARRIBA frameshift 4 0 medium [],duplication EHBP1 NA AC082651.4 RNU4-73P NA NA NA NA NA +2:47813234 2:152284653 FBXO11--Y_RNA(193)/FMNL2(50584) BS_RRAEQZ97 ARRIBA frameshift 4 0 high [],duplication FBXO11 NA Y_RNA FMNL2 CosmicCensus NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_RRAEQZ97 STARFUSION other 4 10 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +2:69387065 2:115499510 GFPT1--DPP10 BS_RRAEQZ97 ARRIBA in-frame 4 0 high [INTRACHROMOSOMAL[chr2:45.06Mb]],inversion GFPT1 NA DPP10 NA NA NA NA NA NA +2:120736285 2:133972013 GLI2--RN7SKP93(375614)/MGAT5(147970) BS_RRAEQZ97 ARRIBA other 2 0 medium [],deletion GLI2 NA RN7SKP93 MGAT5 Oncogene, TranscriptionFactor NA NA NA NA +2:11556771 2:157995180 GREB1--UPP2 BS_RRAEQZ97 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr2:146.23Mb]],deletion GREB1 NA UPP2 NA NA NA NA NA NA +2:27335334 2:209767895 GTF3C2--MAP2(33777)/UNC80(4098) BS_RRAEQZ97 ARRIBA other 1 1 medium [],inversion GTF3C2 NA MAP2 UNC80 NA Oncogene NA NA NA +2:10303177 2:175577472 HPCAL1--AC093459.1(122832)/EXTL2P1(265415) BS_RRAEQZ97 ARRIBA other 3 0 medium [],deletion HPCAL1 NA AC093459.1 EXTL2P1 NA NA NA NA NA +2:10303177 2:217434116 HPCAL1--DIRC3 BS_RRAEQZ97 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr2:206.86Mb]],inversion HPCAL1 NA DIRC3 NA NA Oncogene NA NA NA +2:20823037 2:190360039 LDAH--INPP1 BS_RRAEQZ97 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr2:169.52Mb]],inversion LDAH NA INPP1 NA NA NA NA NA NA +2:58428464 2:208271511 LINC01122--PIKFYVE BS_RRAEQZ97 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr2:149.20Mb]],deletion LINC01122 NA PIKFYVE NA NA NA NA NA NA +2:209580100 2:213214640 MAP2--LINC01953(46928)/AC079610.3(52355) BS_RRAEQZ97 ARRIBA other 3 0 medium [],inversion MAP2 NA LINC01953 AC079610.3 Oncogene NA NA NA NA +2:101790776 2:86131078 MAP4K4--PTCD3 BS_RRAEQZ97 ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr2:15.55Mb]],duplication MAP4K4 NA PTCD3 NA Kinase NA NA NA NA +2:101797383 2:86131078 MAP4K4--PTCD3 BS_RRAEQZ97 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr2:15.55Mb]],duplication MAP4K4 NA PTCD3 NA Kinase NA NA NA NA +2:42579200 2:8736999 MTA3--KIDINS220 BS_RRAEQZ97 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr2:33.66Mb]],inversion MTA3 NA KIDINS220 NA Oncogene NA NA NA NA +2:15292537 2:168996722 NBAS--ABCB11 BS_RRAEQZ97 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr2:153.36Mb]],duplication NBAS NA ABCB11 NA NA NA NA NA NA +2:105745138 2:134713319 NCK2--TMEM163 BS_RRAEQZ97 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr2:28.56Mb]],inversion NCK2 NA TMEM163 NA NA NA NA NA NA +2:183023806 2:148898773 NCKAP1--KIF5C BS_RRAEQZ97 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr2:33.88Mb]],deletion/5'-5' NCKAP1 NA KIF5C NA NA NA NA NA NA +2:239990074 2:241436481 NDUFA10--FARP2 BS_RRAEQZ97 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr2:1.33Mb]],inversion NDUFA10 NA FARP2 NA NA NA NA NA NA +2:183154974 2:202802091 NUP35--ICA1L BS_RRAEQZ97 ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr2:19.61Mb]],deletion/5'-5' NUP35 NA ICA1L NA NA NA NA NA NA +2:196891110 2:162029057 PGAP1--DPP4 BS_RRAEQZ97 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr2:34.76Mb]],deletion PGAP1 NA DPP4 NA NA TumorSuppressorGene NA NA NA +2:28799281 2:235869789 PPP1CB--AGAP1 BS_RRAEQZ97 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr2:206.69Mb]],inversion/3'-3' PPP1CB NA AGAP1 NA NA NA NA NA NA +2:68252125 2:167490177 PPP3R1--AC073050.1 BS_RRAEQZ97 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:99.04Mb]],inversion PPP3R1 NA AC073050.1 NA NA NA NA NA NA +2:44343788 2:60275181 PREPL--AC007100.1(174981)/AC007381.1(75414) BS_RRAEQZ97 ARRIBA frameshift 5 1 medium [],inversion PREPL NA AC007100.1 AC007381.1 NA NA NA NA NA +2:53970543 2:232210326 PSME4--DIS3L2 BS_RRAEQZ97 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr2:177.99Mb]],inversion PSME4 NA DIS3L2 NA NA NA NA NA NA +2:86251957 2:218737838 REEP1--TTLL4 BS_RRAEQZ97 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr2:132.37Mb]],duplication/5'-5' REEP1 NA TTLL4 NA NA NA NA NA NA +2:197615876 2:85302484 RFTN2--TCF7L1 BS_RRAEQZ97 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:112.26Mb]],inversion RFTN2 NA TCF7L1 NA NA TranscriptionFactor NA NA NA +2:86720809 2:196322620 RMND5A--HECW2 BS_RRAEQZ97 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:109.42Mb]],inversion RMND5A NA HECW2 NA NA NA NA NA NA +2:74432588 2:239968415 RTKN--NDUFA10 BS_RRAEQZ97 ARRIBA frameshift 18 2 medium [INTRACHROMOSOMAL[chr2:165.45Mb]],duplication RTKN NA NDUFA10 NA NA NA NA NA NA +2:54987491 2:229976241 RTN4--FBXO36 BS_RRAEQZ97 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:174.81Mb]],inversion RTN4 NA FBXO36 NA TumorSuppressorGene, Oncogene NA NA NA NA +2:28799281 2:235869789 SPDYA--AGAP1 BS_RRAEQZ97 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr2:206.64Mb]],inversion/3'-3' SPDYA NA AGAP1 NA NA NA NA NA NA +2:65431962 2:225651432 SPRED2--NYAP2 BS_RRAEQZ97 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr2:159.97Mb]],inversion SPRED2 NA NYAP2 NA NA NA NA NA NA +2:229879982 2:197781865 TRIP12--BOLL BS_RRAEQZ97 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr2:31.98Mb]],deletion TRIP12 NA BOLL NA NA NA NA NA NA +2:229879982 2:197779066 TRIP12--BOLL BS_RRAEQZ97 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:31.98Mb]],deletion TRIP12 NA BOLL NA NA NA NA NA NA +2:165945524 2:227426450 TTC21B--AC097662.2(38501)/MIR5703(45682) BS_RRAEQZ97 ARRIBA frameshift 1 1 high [],inversion TTC21B NA AC097662.2 MIR5703 NA NA NA NA NA +2:169828052 2:165295773 UBR3--SCN2A BS_RRAEQZ97 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr2:4.44Mb]],duplication UBR3 NA SCN2A NA NA NA NA NA NA +2:169828052 2:165295880 UBR3--SCN2A BS_RRAEQZ97 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr2:4.44Mb]],duplication UBR3 NA SCN2A NA NA NA NA NA NA +2:61470650 2:73813477 USP34--C2orf78 BS_RRAEQZ97 ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr2:12.31Mb]],inversion USP34 NA C2orf78 NA NA NA NA NA NA +2:144517278 2:27387158 ZEB2--PPM1G BS_RRAEQZ97 ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr2:116.95Mb]],deletion ZEB2 NA PPM1G NA Oncogene, TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_RSRPX3S8 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_RSRPX3S8 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_RSRPX3S8 ARRIBA other 10 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +6:22400643 6:22349229 CASC15(32315)/HDGFL1(168850)--CASC15 BS_RSRPX3S8 ARRIBA other 1 0 low [],duplication CASC15 HDGFL1 CASC15 NA NA NA NA NA NA +2:15595553 2:16782022 DDX1--AC008164.1(14467)/AC008069.1(71798) BS_RSRPX3S8 ARRIBA frameshift 7 0 high [],deletion DDX1 NA AC008164.1 AC008069.1 Oncogene NA NA NA NA +15:88126271 15:88137561 NTRK3--NTRK3 BS_RSRPX3S8 ARRIBA frameshift 11 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.40Mb]],duplication/non-canonical_splicing NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +12:15504069 12:15483974 PTPRO--PTPRO BS_RSRPX3S8 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRO NA PTPRO NA NA NA NA NA NA +2:108753061 15:70982932 RANBP2--LRRC49 BS_RSRPX3S8 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr2--chr15]],translocation RANBP2 NA LRRC49 NA CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_RSRPX3S8 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_RSRPX3S8 ARRIBA other 6 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +2:1316375 2:1247327 SNTG2--SNTG2 BS_RSRPX3S8 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.42Mb]],duplication/non-canonical_splicing SNTG2 NA SNTG2 NA NA NA NA NA NA +8:93831572 8:93755020 TMEM67(12338)/AC084346.1(2882)--TMEM67 BS_RSRPX3S8 ARRIBA other 3 0 high [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +5:61755944 5:61686883 C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_RVSEDNJ4 ARRIBA other 4 0 medium [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_RVSEDNJ4 ARRIBA in-frame 2 0 low [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 AC009093.3--ANK2 BS_RWJZFTP9 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_RWJZFTP9 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +12:101760028 9:128625769 GNPTAB--SPTAN1 BS_RWJZFTP9 ARRIBA frameshift 1 1 low [HGNC_GENEFAM,INTERCHROMOSOMAL[chr12--chr9]],translocation GNPTAB NA SPTAN1 NA NA Oncogene NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_RWJZFTP9 ARRIBA in-frame 19 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138861139 7:140787584 KIAA1549--BRAF BS_RWJZFTP9 STARFUSION in-frame 13 3 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +17:68525912 17:66732688 PRKAR1A--PRKCA BS_RWJZFTP9 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr17:1.70Mb]],duplication PRKAR1A NA PRKCA NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase NA NA NA +6:52995831 14:49862653 RN7SK--RN7SL2 BS_RWJZFTP9 STARFUSION other 4 12 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +14:49862572 6:52995634 RN7SL2--7SK BS_RWJZFTP9 STARFUSION other 6 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862573 6:52995792 RN7SL2--7SK BS_RWJZFTP9 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +14:49862573 6:52995801 RN7SL2--7SK BS_RWJZFTP9 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_RWJZFTP9 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:156124019 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_RWJZFTP9 ARRIBA other 1 2 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +9:19680781 17:38595084 SLC24A2--SRCIN1 BS_RWJZFTP9 ARRIBA other 1 2 medium [INTERCHROMOSOMAL[chr9--chr17]],translocation SLC24A2 NA SRCIN1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_RXN5T5YT ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_RXN5T5YT ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +21:14825522 21:15043573 AF127577.4--NRIP1 BS_RXN5T5YT ARRIBA other 1 0 low [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA +21:15014344 21:15043574 AF127577.4--NRIP1 BS_RXN5T5YT ARRIBA other 1 0 low [],duplication AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA +14:49586871 9:35657882 AL139099.5--RMRP BS_RXN5T5YT STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr14--chr9]] AL139099.5 NA RMRP NA NA Oncogene NA NA NA +14:49586854 9:35658010 AL139099.5--RMRP BS_RXN5T5YT STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr14--chr9]] AL139099.5 NA RMRP NA NA Oncogene NA NA NA +16:30068976 19:1455386 ALDOA--APC2 BS_RXN5T5YT ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr16--chr19]],translocation ALDOA NA APC2 NA NA Oncogene NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_RXN5T5YT ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_RXN5T5YT ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +4:108168604 4:55771495 LEF1--NMU(134797)/RNU6-276P(27141) BS_RXN5T5YT ARRIBA other 6 0 medium [],deletion LEF1 NA NMU RNU6-276P CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +21:14825522 21:15043573 LINC02246--NRIP1 BS_RXN5T5YT ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:0.04Mb],LOCAL_REARRANGEMENT:-:[42683]],duplication LINC02246 NA NRIP1 NA NA Oncogene NA NA NA +21:14853274 21:15043574 LINC02246--NRIP1 BS_RXN5T5YT ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:0.04Mb],LOCAL_REARRANGEMENT:-:[42683]],duplication LINC02246 NA NRIP1 NA NA Oncogene NA NA NA +9:120713988 3:129504531 MEGF9--IFT122 BS_RXN5T5YT ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr9--chr3]],translocation MEGF9 NA IFT122 NA NA NA NA NA NA +4:84492407 4:54426448 NKX6-1--AC098587.1(49696)/AC098868.1(14054) BS_RXN5T5YT ARRIBA other 1 1 medium [],inversion NKX6-1 NA AC098587.1 AC098868.1 TranscriptionFactor NA NA NA NA +4:54277492 4:53508227 PDGFRA--LNX1 BS_RXN5T5YT ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.53Mb]],inversion PDGFRA NA LNX1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +9:35657772 14:49586588 RMRP--AL139099.5 BS_RXN5T5YT STARFUSION other 5 8 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL139099.5 NA Oncogene NA NA NA NA +9:35657773 14:49586588 RMRP--RN7SL1 BS_RXN5T5YT STARFUSION other 5 8 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL1 NA Oncogene NA NA NA NA +6:52995783 14:49862665 RN7SK--RN7SL2 BS_RXN5T5YT STARFUSION other 6 15 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +6:52995906 14:49862740 RN7SK--RN7SL2 BS_RXN5T5YT STARFUSION other 5 15 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +14:49586871 9:35657882 RN7SL1--RMRP BS_RXN5T5YT STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr14--chr9]] RN7SL1 NA RMRP NA NA Oncogene NA NA NA +14:49586854 9:35658010 RN7SL1--RMRP BS_RXN5T5YT STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr14--chr9]] RN7SL1 NA RMRP NA NA Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_RXN5T5YT ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_S0175QKX ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_S0175QKX ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_S0175QKX ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +10:17100005 10:17104605 CUBN--CUBN BS_S0175QKX ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.31Mb]],duplication/non-canonical_splicing CUBN NA CUBN NA Oncogene Oncogene NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_S0175QKX ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +14:88712271 14:88754671 EML5--EML5 BS_S0175QKX ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.18Mb]],duplication/non-canonical_splicing EML5 NA EML5 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_S0175QKX ARRIBA other 9 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_S0175QKX ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +18:7032066 18:7046367 LAMA1--LAMA1 BS_S0175QKX ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA +2:149486345 2:149449049 LYPD6(12197)/MMADHC(83289)--LYPD6 BS_S0175QKX ARRIBA other 3 0 high [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_S0175QKX ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_S1KK7XRH ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_S1KK7XRH ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_S1KK7XRH ARRIBA other 7 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +1:171247581 1:170807604 AL445673.1--PRRX1(68185)/MROH9(127867) BS_S1KK7XRH ARRIBA other 3 0 medium [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +5:37122430 5:37239869 C5orf42--C5orf42 BS_S1KK7XRH ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.14Mb]],duplication/non-canonical_splicing C5orf42 NA C5orf42 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_S1KK7XRH ARRIBA other 6 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_S1KK7XRH ARRIBA other 3 1 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_S1KK7XRH ARRIBA in-frame 11 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +6:118813102 6:118856545 MCM9--MCM9 BS_S1KK7XRH ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_S1KK7XRH ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:167575918 3:167664448 WDR49--WDR49(10465)/PDCD10(18850) BS_S1KK7XRH ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +7:9189560 7:8612991 AC004852.2--NXPH1 BS_S1M423AB ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr7:0.33Mb]],deletion/5'-5' AC004852.2 NA NXPH1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_S1M423AB ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_S1M423AB ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_S1M423AB ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4929717 10:4830675 AKR1C6P--AKR1E2 BS_S1M423AB ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_S1M423AB ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_S1M423AB ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_S1M423AB ARRIBA frameshift 69 6 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_S1M423AB ARRIBA other 8 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +14:59456438 14:59565275 GPR135--CCDC175 BS_S1M423AB ARRIBA other 1 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59565275 GPR135--CCDC175 BS_S1M423AB ARRIBA other 1 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59543454 GPR135--CCDC175 BS_S1M423AB ARRIBA other 1 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59540746 GPR135--CCDC175 BS_S1M423AB ARRIBA other 1 2 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_S1M423AB ARRIBA frameshift 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_S1M423AB ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +1:176765837 1:176702607 PAPPA2--PAPPA2 BS_S1M423AB ARRIBA frameshift 17 9 low [SELFIE,INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing PAPPA2 NA PAPPA2 NA Oncogene Oncogene NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_S1M423AB ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_S1M423AB ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +13:49976333 13:49997419 SPRYD7(39843)/DLEU2(6219)--DLEU2 BS_S1M423AB ARRIBA other 1 0 low [],duplication SPRYD7 DLEU2 DLEU2 NA NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA +8:52212079 8:52230077 ST18--ST18 BS_S1M423AB ARRIBA frameshift 15 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:114981512 1:114923449 SYCP1--SYCP1 BS_S1M423AB ARRIBA frameshift 33 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_S2TA8R29 ARRIBA other 41 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_S2TA8R29 ARRIBA other 41 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:91102340 5:90781430 ADGRV1--ADGRV1 BS_S2TA8R29 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +1:77137746 1:77062975 AL035409.1--ST6GALNAC5 BS_S2TA8R29 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_REARRANGEMENT:+:[2209]],duplication AL035409.1 NA ST6GALNAC5 NA NA NA NA NA NA +1:210775348 1:210674288 KCNH1--HHAT BS_S2TA8R29 ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_INVERSION:-:+:[527]],inversion KCNH1 NA HHAT NA Oncogene NA NA NA NA +1:210740896 1:210674288 KCNH1--HHAT BS_S2TA8R29 ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.00Mb],LOCAL_INVERSION:-:+:[527]],duplication/3'-3' KCNH1 NA HHAT NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_S2TA8R29 ARRIBA other 41 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:138519321 6:117320030 TRIM24--ROS1 BS_S2TA8R29 ARRIBA in-frame 12 2 high [INTERCHROMOSOMAL[chr7--chr6]],translocation TRIM24 NA ROS1 NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA +7:138519321 6:117320030 TRIM24--ROS1 BS_S2TA8R29 STARFUSION in-frame 13 2 NA [INTERCHROMOSOMAL[chr7--chr6]] TRIM24 NA ROS1 NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_S458NMKH ARRIBA other 56 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_S458NMKH ARRIBA other 56 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:7778762 9:84741892 AFAP1--NTRK2 BS_S458NMKH ARRIBA in-frame 90 12 high [ChimerSeq,INTERCHROMOSOMAL[chr4--chr9]],translocation AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion +4:7778762 9:84744973 AFAP1--NTRK2 BS_S458NMKH ARRIBA in-frame 2 5 medium [ChimerSeq,INTERCHROMOSOMAL[chr4--chr9]],translocation AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion +4:7778762 9:84751986 AFAP1--NTRK2 BS_S458NMKH ARRIBA frameshift 1 2 medium [ChimerSeq,INTERCHROMOSOMAL[chr4--chr9]],translocation AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion +4:7778762 9:84741892 AFAP1--NTRK2 BS_S458NMKH STARFUSION in-frame 92 13 NA [ChimerSeq,INTERCHROMOSOMAL[chr4--chr9]] AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_S458NMKH ARRIBA other 10 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +17:7656768 14:49862815 ATP1B2--RN7SL2 BS_S458NMKH STARFUSION other 20 15 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +3:178748404 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_S458NMKH ARRIBA other 1 1 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +9:84752085 4:7786311 NTRK2--AFAP1 BS_S458NMKH ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr9--chr4]],translocation NTRK2 NA AFAP1 NA Oncogene, Kinase NA NA NA NA +9:84752085 4:7800653 NTRK2--AFAP1 BS_S458NMKH ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr9--chr4]],translocation NTRK2 NA AFAP1 NA Oncogene, Kinase NA NA NA NA +9:84867431 4:7872080 NTRK2--AFAP1 BS_S458NMKH ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr9--chr4]],translocation NTRK2 NA AFAP1 NA Oncogene, Kinase NA NA NA NA +9:84752085 4:7809763 NTRK2--AFAP1 BS_S458NMKH ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr9--chr4]],translocation NTRK2 NA AFAP1 NA Oncogene, Kinase NA NA NA NA +9:84752085 4:7819171 NTRK2--AFAP1 BS_S458NMKH ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr9--chr4]],translocation NTRK2 NA AFAP1 NA Oncogene, Kinase NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_S458NMKH ARRIBA other 56 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995908 14:20343378 7SK--AL355075.4 BS_S4V9E1XJ STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL355075.4 NA NA NA NA NA NA +6:52995908 14:20343378 7SK--RPPH1 BS_S4V9E1XJ STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_S4V9E1XJ ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_S4V9E1XJ ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:7656768 14:49862815 ATP1B2--RN7SL2 BS_S4V9E1XJ STARFUSION other 16 4 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_S4V9E1XJ ARRIBA in-frame 3 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138867975 7:140726516 KIAA1549--BRAF BS_S4V9E1XJ ARRIBA frameshift 2 0 low [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +14:44797930 14:44393738 LINC02302(15101)/DOCK11P1(62386)--AL161752.1 BS_S4V9E1XJ ARRIBA other 4 0 medium [],deletion LINC02302 DOCK11P1 AL161752.1 NA NA NA NA NA NA +13:19730239 13:19852190 PSPC1--ZMYM5 BS_S4V9E1XJ ARRIBA frameshift 1 2 high [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19759323 13:19835689 PSPC1--ZMYM5 BS_S4V9E1XJ ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_S4V9E1XJ ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_S50KQEXV ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_S50KQEXV ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_S50KQEXV ARRIBA in-frame 3 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_S50KQEXV ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:210032924 2:210015973 AC007038.1--RPE BS_S5P8VTN5 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr2:0.01Mb],LOCAL_REARRANGEMENT:+:[8474]],duplication AC007038.1 NA RPE NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_S5P8VTN5 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_S5P8VTN5 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_S5P8VTN5 ARRIBA other 8 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +18:79680261 18:79045426 CTDP1--SALL3(42749)/ATP9B(23859) BS_S5P8VTN5 ARRIBA frameshift 2 0 high [],inversion CTDP1 NA SALL3 ATP9B NA TranscriptionFactor NA NA NA +13:48976177 6:163314827 FNDC3A--PACRG BS_S5P8VTN5 ARRIBA other 20 0 high [INTERCHROMOSOMAL[chr13--chr6]],translocation FNDC3A NA PACRG NA NA TumorSuppressorGene NA NA NA +13:48976917 6:163314827 FNDC3A--PACRG BS_S5P8VTN5 ARRIBA other 13 1 high [INTERCHROMOSOMAL[chr13--chr6]],translocation FNDC3A NA PACRG NA NA TumorSuppressorGene NA NA NA +13:48976177 6:163314827 FNDC3A--PACRG BS_S5P8VTN5 STARFUSION other 23 1 NA [INTERCHROMOSOMAL[chr13--chr6]] FNDC3A NA PACRG NA NA TumorSuppressorGene NA NA NA +13:48976917 6:163314827 FNDC3A--PACRG BS_S5P8VTN5 STARFUSION other 13 1 NA [INTERCHROMOSOMAL[chr13--chr6]] FNDC3A NA PACRG NA NA TumorSuppressorGene NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_S5P8VTN5 ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +2:25980373 X:103450497 KIF3C--AL606763.1(42198)/Z69733.1(47026) BS_S5P8VTN5 ARRIBA frameshift 2 0 high [],translocation KIF3C NA AL606763.1 Z69733.1 NA NA NA NA NA +1:39455097 19:54435828 MACF1--TTYH1 BS_S5P8VTN5 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr1--chr19]],translocation MACF1 NA TTYH1 NA Oncogene Oncogene NA NA NA +3:12663813 3:13399861 RAF1--NUP210 BS_S5P8VTN5 ARRIBA other 19 2 high [INTRACHROMOSOMAL[chr3:0.65Mb]],duplication RAF1 NA NUP210 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +3:12663813 3:13399861 RAF1--NUP210 BS_S5P8VTN5 STARFUSION other 19 3 NA [INTRACHROMOSOMAL[chr3:0.65Mb]] RAF1 NA NUP210 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_S5P8VTN5 ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +21:10543382 21:10454134 TPTE--BAGE2 BS_S5P8VTN5 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA +21:10527412 21:10482740 TPTE--BAGE2 BS_S5P8VTN5 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA +21:10527412 21:10499475 TPTE--BAGE2 BS_S5P8VTN5 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA +21:10527412 21:10514122 TPTE--BAGE2 BS_S5P8VTN5 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:0.01Mb],LOCAL_REARRANGEMENT:+:[5122]],duplication TPTE NA BAGE2 NA NA NA NA NA NA +4:176177654 4:176149807 WDR17--WDR17 BS_S5P8VTN5 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing WDR17 NA WDR17 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_S69QZAJR ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_S69QZAJR ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:155503021 7:155509097 AC009403.2--AC009403.2 BS_S69QZAJR ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_S69QZAJR ARRIBA other 16 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_S69QZAJR ARRIBA other 3 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +13:25589699 13:25570767 ATP8A2--ATP8A2 BS_S69QZAJR ARRIBA in-frame 5 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_S69QZAJR ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +5:24593260 5:24611139 CDH10--CDH10 BS_S69QZAJR ARRIBA frameshift 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr5:0.16Mb]],duplication CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +2:124798320 2:124763672 CNTNAP5--CNTNAP5 BS_S69QZAJR ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.89Mb]],duplication/non-canonical_splicing CNTNAP5 NA CNTNAP5 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_S69QZAJR ARRIBA other 22 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_S69QZAJR ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_S69QZAJR ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +5:151507582 7:151086546 FAT2--AGAP3 BS_S69QZAJR ARRIBA frameshift 1 2 medium [INTERCHROMOSOMAL[chr5--chr7]],translocation FAT2 NA AGAP3 NA Oncogene NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_S69QZAJR ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_S69QZAJR ARRIBA frameshift 17 4 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_S69QZAJR ARRIBA in-frame 19 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_S69QZAJR ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_S69QZAJR ARRIBA frameshift 3 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_S69QZAJR ARRIBA other 16 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +15:75943572 15:76011286 NRG4--NRG4 BS_S69QZAJR ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +7:77951712 7:77920279 PHTF2--PHTF2 BS_S69QZAJR ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA +12:15504069 12:15483974 PTPRO--PTPRO BS_S69QZAJR ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRO NA PTPRO NA NA NA NA NA NA +12:70656704 12:70662605 PTPRR--PTPRR BS_S69QZAJR ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_S69QZAJR ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:13325094 6:7310029 TBC1D7--SSR1 BS_S69QZAJR ARRIBA in-frame 10 3 high [INTRACHROMOSOMAL[chr6:5.92Mb]],deletion TBC1D7 NA SSR1 NA NA NA NA NA NA +6:13326787 6:7310029 TBC1D7--SSR1 BS_S69QZAJR ARRIBA in-frame 8 1 high [INTRACHROMOSOMAL[chr6:5.92Mb]],deletion TBC1D7 NA SSR1 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_S69QZAJR ARRIBA other 4 1 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +X:146955175 X:146916390 Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_S69QZAJR ARRIBA other 10 0 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_S6NJRR5W ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_S6NJRR5W ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:49586867 6:52995635 AL139099.5--RN7SK BS_S6NJRR5W STARFUSION other 5 10 NA [INTERCHROMOSOMAL[chr14--chr6]] AL139099.5 NA RN7SK NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_S6NJRR5W ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +6:52995910 14:49862664 RN7SK--RN7SL2 BS_S6NJRR5W STARFUSION other 6 10 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +14:49586867 6:52995635 RN7SL1--RN7SK BS_S6NJRR5W STARFUSION other 5 10 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL1 NA RN7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_S6NJRR5W ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:62613836 2:70713184 AC092155.1--ADD2 BS_S6S7SK3P ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr2:7.94Mb]],inversion/3'-3' AC092155.1 NA ADD2 NA NA NA NA NA NA +2:70683591 9:11829360 ADD2--AL592227.1(210739)/AL589678.1(269300) BS_S6S7SK3P ARRIBA frameshift 2 0 high [],translocation ADD2 NA AL592227.1 AL589678.1 NA NA NA NA NA +2:70767886 2:62501262 ADD2--TMEM17 BS_S6S7SK3P ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr2:8.10Mb]],inversion/5'-5' ADD2 NA TMEM17 NA NA NA NA NA NA +4:62044549 9:26604525 ADGRL3--AL353753.1(486117)/AL442639.1(38172) BS_S6S7SK3P ARRIBA frameshift 8 0 high [],translocation ADGRL3 NA AL353753.1 AL442639.1 NA NA NA NA NA +3:43600384 3:58365874 ANO10--PXK BS_S6S7SK3P ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr3:14.64Mb]],inversion ANO10 NA PXK NA NA NA NA NA NA +3:43605714 3:58365874 ANO10--PXK BS_S6S7SK3P ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr3:14.64Mb]],inversion ANO10 NA PXK NA NA NA NA NA NA +2:202520201 2:218984305 BMPR2--FEV BS_S6S7SK3P ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr2:16.41Mb]],inversion BMPR2 NA FEV NA Kinase, TumorSuppressorGene, Kinase CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +16:52058368 16:52084566 C16orf97--LINC00919 BS_S6S7SK3P ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr16:0.00Mb],LOCAL_REARRANGEMENT:-:[4591]],duplication C16orf97 NA LINC00919 NA NA NA NA NA NA +4:185190143 4:62070109 CFAP97--ADGRL3 BS_S6S7SK3P ARRIBA frameshift 9 2 high [INTRACHROMOSOMAL[chr4:123.08Mb]],inversion CFAP97 NA ADGRL3 NA NA NA NA NA NA +4:185190143 4:62070109 CFAP97--ADGRL3 BS_S6S7SK3P STARFUSION in-frame 9 2 NA [INTRACHROMOSOMAL[chr4:123.08Mb]] CFAP97 NA ADGRL3 NA NA NA NA NA NA +14:73944335 6:105101213 FAM161B--BVES BS_S6S7SK3P ARRIBA in-frame 1 1 high [INTERCHROMOSOMAL[chr14--chr6]],translocation FAM161B NA BVES NA NA NA NA NA NA +14:73943353 6:105114424 FAM161B--BVES BS_S6S7SK3P ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr14--chr6]],translocation FAM161B NA BVES NA NA NA NA NA NA +8:11444031 10:43220912 FAM167A--RASGEF1A BS_S6S7SK3P ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr8--chr10]],translocation/5'-5' FAM167A NA RASGEF1A NA NA NA NA NA NA +8:42959299 8:42970309 HOOK3--HOOK3 BS_S6S7SK3P ARRIBA frameshift 2 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.13Mb]],inversion/3'-3' HOOK3 NA HOOK3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +1:88684628 10:96204616 PKN2--BLNK BS_S6S7SK3P ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr1--chr10]],translocation PKN2 NA BLNK NA Kinase, Kinase TumorSuppressorGene NA NA NA +1:88684628 10:96201058 PKN2--BLNK BS_S6S7SK3P ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr1--chr10]],translocation PKN2 NA BLNK NA Kinase, Kinase TumorSuppressorGene NA NA NA +1:88684628 10:96200158 PKN2--BLNK BS_S6S7SK3P ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr1--chr10]],translocation PKN2 NA BLNK NA Kinase, Kinase TumorSuppressorGene NA NA NA +3:121449315 3:108205318 POLQ--IFT57 BS_S6S7SK3P ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr3:13.21Mb]],inversion/5'-5' POLQ NA IFT57 NA CosmicCensus NA NA NA NA +4:184666064 4:168511423 PRIMPOL--PALLD BS_S6S7SK3P ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr4:15.72Mb]],duplication PRIMPOL NA PALLD NA NA NA NA NA NA +4:184661903 4:168511423 PRIMPOL--PALLD BS_S6S7SK3P ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:15.72Mb]],duplication PRIMPOL NA PALLD NA NA NA NA NA NA +9:15433636 11:34505753 SNAPC3--ELF5 BS_S6S7SK3P ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr9--chr11]],translocation SNAPC3 NA ELF5 NA Oncogene TranscriptionFactor NA NA NA +3:136417885 4:137394191 STAG1--SERF1AP1(93004)/STMN1P2(31235) BS_S6S7SK3P ARRIBA frameshift 1 0 low [],translocation STAG1 NA SERF1AP1 STMN1P2 CosmicCensus, Oncogene NA NA NA NA +1:172570730 1:113163460 SUCO--LRIG2(31200)/AL357055.1(5534) BS_S6S7SK3P ARRIBA frameshift 2 1 high [],inversion SUCO NA LRIG2 AL357055.1 NA NA NA NA NA +3:11801893 3:55982738 TAMM41--ERC2 BS_S6S7SK3P ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr3:43.66Mb]],inversion/5'-5' TAMM41 NA ERC2 NA NA Oncogene NA NA NA +18:55350359 18:40838192 TCF4--RPL17P45(693688)/KC6(627591) BS_S6S7SK3P ARRIBA frameshift 37 3 high [],deletion TCF4 NA RPL17P45 KC6 TumorSuppressorGene, TranscriptionFactor NA NA NA NA +7:12094653 7:551470 THSD7A(262455)/TMEM106B(116588)--PRKAR1B BS_S6S7SK3P ARRIBA other 2 0 medium [],deletion THSD7A TMEM106B PRKAR1B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_S71RJ8DH ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_S71RJ8DH ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:21369967 10:21172477 AL158209.1--NEBL BS_S71RJ8DH STARFUSION other 25 4 NA [INTRACHROMOSOMAL[chr10:0.17Mb]] AL158209.1 NA NEBL NA NA NA NA NA NA +10:21372895 10:21172477 AL158209.1--NEBL BS_S71RJ8DH STARFUSION other 12 4 NA [INTRACHROMOSOMAL[chr10:0.17Mb]] AL158209.1 NA NEBL NA NA NA NA NA NA +22:29604112 22:28014392 NF2--TTC28 BS_S71RJ8DH ARRIBA frameshift 17 0 high [INTRACHROMOSOMAL[chr22:0.92Mb]],inversion NF2 NA TTC28 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:29604112 22:28014392 NF2--TTC28 BS_S71RJ8DH STARFUSION frameshift 17 0 NA [INTRACHROMOSOMAL[chr22:0.92Mb]] NF2 NA TTC28 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_S71RJ8DH ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_S7CZY2CH ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_S7CZY2CH ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_S7CZY2CH ARRIBA other 9 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +10:94171496 10:94005450 PLCE1--PIPSL(43910)/PLCE1(25362) BS_S7CZY2CH ARRIBA frameshift 2 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +10:94032252 10:94017339 PLCE1--PIPSL(55799)/PLCE1(13473) BS_S7CZY2CH ARRIBA frameshift 5 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_S7CZY2CH ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:50708978 8:50704600 SNTG1--SNTG1 BS_S7CZY2CH ARRIBA in-frame 21 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +17:72185454 17:72221873 SOX9-AS1--SOX9-AS1 BS_S7CZY2CH ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing SOX9-AS1 NA SOX9-AS1 NA NA NA NA NA NA +2:233966755 2:233937353 TRPM8--TRPM8 BS_S7CZY2CH ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing TRPM8 NA TRPM8 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_S9929Z8B ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_S9929Z8B ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_S9929Z8B ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +15:93373585 15:93219654 AC091078.1--AC112693.3(11606)/AC112693.1(37544) BS_SAA624A4 ARRIBA other 3 2 high [],duplication AC091078.1 NA AC112693.3 AC112693.1 NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_SAA624A4 ARRIBA other 35 4 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +3:167140689 3:167282495 AC092965.1(74369)/ZBBX(99598)--ZBBX BS_SAA624A4 ARRIBA other 8 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +4:16426440 4:16320065 AC097515.1--TAPT1-AS1 BS_SAA624A4 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16426440 4:16238771 AC097515.1--TAPT1-AS1 BS_SAA624A4 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_SAA624A4 STARFUSION other 21 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_SAA624A4 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +5:7804692 5:7784365 ADCY2--ADCY2 BS_SAA624A4 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA +20:5067209 20:5069349 AL121890.4--TMEM230 BS_SAA624A4 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[78]],duplication AL121890.4 NA TMEM230 NA NA NA NA NA NA +9:34381290 9:34220908 C9orf24--UBAP1 BS_SAA624A4 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr9:0.13Mb]],duplication/3'-3' C9orf24 NA UBAP1 NA NA NA NA NA NA +10:104147891 10:104162403 CFAP43--CFAP43 BS_SAA624A4 ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.10Mb]],duplication/non-canonical_splicing CFAP43 NA CFAP43 NA NA NA NA NA NA +8:61376779 8:61299677 CLVS1--CLVS1 BS_SAA624A4 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.44Mb]],duplication/non-canonical_splicing CLVS1 NA CLVS1 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_SAA624A4 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +12:123859268 12:123853206 DNAH10--DNAH10 BS_SAA624A4 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA +2:211561903 2:211630594 ERBB4--ERBB4 BS_SAA624A4 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:1.16Mb]],duplication/non-canonical_splicing ERBB4 NA ERBB4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +10:77073097 10:77090510 KCNMA1--KCNMA1 BS_SAA624A4 ARRIBA frameshift 15 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr10:0.77Mb]],duplication/non-canonical_splicing KCNMA1 NA KCNMA1 NA NA NA NA NA NA +18:6977727 18:6980637 LAMA1--LAMA1 BS_SAA624A4 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA +8:136797370 8:136529795 LINC02055--AC013546.1 BS_SAA624A4 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr8:0.00Mb],LOCAL_REARRANGEMENT:+:[922]],duplication LINC02055 NA AC013546.1 NA NA NA NA NA NA +14:59967213 14:59959818 LRRC9--LRRC9 BS_SAA624A4 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_SAA624A4 ARRIBA frameshift 10 5 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_SAA624A4 ARRIBA frameshift 44 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +4:87529151 18:21350201 SPARCL1--GREB1L BS_SAA624A4 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr4--chr18]],translocation SPARCL1 NA GREB1L NA TumorSuppressorGene NA NA NA NA +4:16323036 4:16288884 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_SAA624A4 ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_SAA624A4 ARRIBA other 3 2 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +14:37701526 14:37680151 TTC6--TTC6 BS_SAA624A4 ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_SAA624A4 ARRIBA frameshift 20 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_SBFNFZ8B ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_SBFNFZ8B ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_SBFNFZ8B ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +5:90848821 5:90805284 ADGRV1--ADGRV1 BS_SBFNFZ8B ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +X:33725628 X:33020200 AL050305.1(313455)/AL591501.1(880)--DMD BS_SBFNFZ8B ARRIBA other 2 0 medium [],deletion AL050305.1 AL591501.1 DMD NA NA TumorSuppressorGene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_SBFNFZ8B ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_SBFNFZ8B ARRIBA in-frame 5 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_SBFNFZ8B ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +14:88712271 14:88754671 EML5--EML5 BS_SBFNFZ8B ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.18Mb]],duplication/non-canonical_splicing EML5 NA EML5 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_SBFNFZ8B ARRIBA in-frame 41 3 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:196373140 1:196479238 KCNT2--KCNT2 BS_SBFNFZ8B ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA +12:66123568 12:66153448 LLPH--TMBIM4 BS_SBFNFZ8B ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_REARRANGEMENT:-:[5078]],duplication LLPH NA TMBIM4 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_SBFNFZ8B ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_SBFNFZ8B ARRIBA frameshift 14 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +14:46873433 14:47035304 MDGA2--MDGA2 BS_SBFNFZ8B ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_SBFNFZ8B ARRIBA other 3 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_SBFNFZ8B ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +18:4455083 7:83749642 DLGAP1--RAD23BP2(85017)/SEMA3A(206135) BS_SD8YBRBR ARRIBA other 3 0 low [],translocation DLGAP1 NA RAD23BP2 SEMA3A Oncogene NA NA NA NA +12:2797871 12:1408149 FKBP4--ERC1 BS_SD8YBRBR ARRIBA frameshift 15 0 medium [INTRACHROMOSOMAL[chr12:1.30Mb]],duplication FKBP4 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA +12:2795244 12:1408149 FKBP4--ERC1 BS_SD8YBRBR ARRIBA in-frame 11 0 medium [INTRACHROMOSOMAL[chr12:1.30Mb]],duplication FKBP4 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA +12:2797282 12:1408149 FKBP4--ERC1 BS_SD8YBRBR ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr12:1.30Mb]],duplication FKBP4 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA +12:2796964 12:1408149 FKBP4--ERC1 BS_SD8YBRBR ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:1.30Mb]],duplication FKBP4 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA +12:2797871 12:1408149 FKBP4--ERC1 BS_SD8YBRBR STARFUSION in-frame 17 0 NA [INTRACHROMOSOMAL[chr12:1.30Mb]] FKBP4 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA +9:133031164 9:134024362 GTF3C5--VAV2(31758)/LINC00094(1077) BS_SD8YBRBR ARRIBA frameshift 4 0 high [],deletion GTF3C5 NA VAV2 LINC00094 NA Oncogene NA NA NA +12:58890665 12:23896024 LRIG3--SOX5 BS_SD8YBRBR ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr12:34.92Mb]],deletion LRIG3 NA SOX5 NA TumorSuppressorGene, CosmicCensus Oncogene, TranscriptionFactor NA NA NA +11:21113714 11:40319721 NELL1--LRRC4C BS_SD8YBRBR ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr11:18.54Mb]],inversion NELL1 NA LRRC4C NA NA NA NA NA NA +17:28043331 12:31259514 NLK--MREGP1(5069)/AC024940.5(20908) BS_SD8YBRBR ARRIBA frameshift 2 0 medium [],translocation NLK NA MREGP1 AC024940.5 Kinase, Kinase NA NA NA NA +12:20613700 12:57395818 PDE3A--R3HDM2 BS_SD8YBRBR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:36.57Mb]],inversion PDE3A NA R3HDM2 NA NA NA NA NA NA +12:57395749 12:20613443 R3HDM2--PDE3A BS_SD8YBRBR ARRIBA other 84 6 high [INTRACHROMOSOMAL[chr12:36.57Mb]],inversion R3HDM2 NA PDE3A NA NA NA NA NA NA +12:57430720 12:20613443 R3HDM2--PDE3A BS_SD8YBRBR ARRIBA other 12 0 medium [INTRACHROMOSOMAL[chr12:36.57Mb]],inversion R3HDM2 NA PDE3A NA NA NA NA NA NA +12:57395749 12:20613443 R3HDM2--PDE3A BS_SD8YBRBR STARFUSION other 97 8 NA [INTRACHROMOSOMAL[chr12:36.57Mb]] R3HDM2 NA PDE3A NA NA NA NA NA NA +12:57430720 12:20613443 R3HDM2--PDE3A BS_SD8YBRBR STARFUSION other 12 8 NA [INTRACHROMOSOMAL[chr12:36.57Mb]] R3HDM2 NA PDE3A NA NA NA NA NA NA +12:64490119 12:64350442 TBK1--AC012158.1 BS_SD8YBRBR ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr12:0.05Mb],LOCAL_REARRANGEMENT:+:[54815]],duplication TBK1 NA AC012158.1 NA Kinase, Kinase NA NA NA NA +12:64490119 12:64350442 TBK1--C12orf56 BS_SD8YBRBR ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_INVERSION:+:-:[60688]],duplication/5'-5' TBK1 NA C12orf56 NA Kinase, Kinase NA NA NA NA +X:55489169 X:55535636 USP51--AL590410.1(14922)/Y_RNA(47097) BS_SD8YBRBR ARRIBA other 4 0 high [],inversion USP51 NA AL590410.1 Y_RNA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_SDA4RMMG ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_SDA4RMMG ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:48809641 2:48809118 AC009975.1--ELOBP3(28223)/AC009975.1(222) BS_SDA4RMMG ARRIBA other 3 2 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_SDA4RMMG ARRIBA other 36 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_SDA4RMMG ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_SDA4RMMG ARRIBA in-frame 15 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_SDA4RMMG ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +16:76449858 16:76448012 CNTNAP4--CNTNAP4 BS_SDA4RMMG ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.28Mb]],duplication/non-canonical_splicing CNTNAP4 NA CNTNAP4 NA NA NA NA NA NA +2:124798320 2:124772799 CNTNAP5--CNTNAP5 BS_SDA4RMMG ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.89Mb]],duplication/non-canonical_splicing CNTNAP5 NA CNTNAP5 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_SDA4RMMG ARRIBA other 13 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_SDA4RMMG ARRIBA in-frame 5 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_SDA4RMMG ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_SDA4RMMG ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_SDA4RMMG ARRIBA frameshift 24 1 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_SDA4RMMG ARRIBA frameshift 14 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_SDA4RMMG ARRIBA other 9 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_SDA4RMMG ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_SDA4RMMG ARRIBA other 4 2 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_SDA4RMMG ARRIBA in-frame 1 2 medium [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +8:89436506 8:89725641 KRT8P4(21435)/AF117829.1(172903)--AF117829.1 BS_SDA4RMMG ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +8:89418044 8:89725641 KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_SDA4RMMG ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_SDA4RMMG ARRIBA frameshift 11 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_SDA4RMMG ARRIBA other 4 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_SDA4RMMG ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +1:176595595 1:176555407 PAPPA2--PAPPA2 BS_SDA4RMMG ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing PAPPA2 NA PAPPA2 NA Oncogene Oncogene NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_SDA4RMMG ARRIBA other 7 0 medium [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +17:6525356 17:6590630 PITPNM3--KIAA0753 BS_SDA4RMMG ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA +17:6525356 17:6600458 PITPNM3--KIAA0753 BS_SDA4RMMG ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:0.02Mb],LOCAL_REARRANGEMENT:-:[21654]],duplication PITPNM3 NA KIAA0753 NA NA NA NA NA NA +13:19705662 13:19709599 PSPC1--PSPC1 BS_SDA4RMMG ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.11Mb]],duplication/non-canonical_splicing PSPC1 NA PSPC1 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_SDA4RMMG ARRIBA frameshift 18 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_SDA4RMMG ARRIBA other 4 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_SDA4RMMG ARRIBA other 43 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:233966755 2:233937353 TRPM8--TRPM8 BS_SDA4RMMG ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing TRPM8 NA TRPM8 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_SDCNP7MW ARRIBA other 4 0 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +4:138281739 4:138298658 AC093903.1--AC093903.1(16874)/LINC00498(198) BS_SDCNP7MW ARRIBA other 6 0 medium [],duplication AC093903.1 NA AC093903.1 LINC00498 NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_SDCNP7MW ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +X:36205110 X:36179345 CFAP47--CFAP47 BS_SDCNP7MW ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +11:31241450 11:31305777 DCDC1--DCDC1 BS_SDCNP7MW ARRIBA in-frame 14 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.54Mb]],duplication/non-canonical_splicing DCDC1 NA DCDC1 NA NA NA NA NA NA +14:52123673 14:52188234 LINC02319--AL118557.1(32055)/PTGDR(79479) BS_SDCNP7MW ARRIBA other 4 0 medium [],duplication LINC02319 NA AL118557.1 PTGDR NA NA NA TumorSuppressorGene NA +13:108910150 13:108883059 MYO16--MYO16 BS_SDCNP7MW ARRIBA frameshift 2 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +14:49862558 6:52995744 RN7SL2--RN7SK BS_SDCNP7MW STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL2 NA RN7SK NA NA NA NA NA NA +10:88631228 10:88602576 RPL7P34(12294)/LIPF(33213)--LIPJ BS_SDCNP7MW ARRIBA other 4 0 medium [],duplication RPL7P34 LIPF LIPJ NA NA NA NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_SDCNP7MW ARRIBA other 2 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +5:110568447 5:110642371 TMEM232--TMEM232 BS_SDCNP7MW ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA +14:37968588 14:37936234 TTC6--TTC6 BS_SDCNP7MW ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_SDCNP7MW ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_SDZY6RZ3 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_SDZY6RZ3 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:37226304 5:37227817 C5orf42--C5orf42 BS_SDZY6RZ3 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.14Mb]],duplication/non-canonical_splicing C5orf42 NA C5orf42 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_SDZY6RZ3 ARRIBA in-frame 3 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_SDZY6RZ3 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:107380585 3:107462735 AC063944.1--LINC01990 BS_SES41DAX ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr3:0.01Mb],LOCAL_INVERSION:-:+:[9626]],duplication/5'-5' AC063944.1 NA LINC01990 NA NA NA NA NA NA +15:93593359 15:93557472 AC110023.1--AC091078.1 BS_SES41DAX ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +14:72594327 14:72619984 AC004828.1--DPF3 BS_SFKZSJN1 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA +14:72594327 14:72629736 AC004828.1--DPF3 BS_SFKZSJN1 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_SFKZSJN1 ARRIBA other 83 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_SFKZSJN1 ARRIBA other 83 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:155503021 7:155509097 AC009403.2--AC009403.2 BS_SFKZSJN1 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_SFKZSJN1 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +6:19297161 6:19325798 AL357052.1--AL022068.1 BS_SFKZSJN1 ARRIBA other 1 2 low [INTRACHROMOSOMAL[chr6:0.00Mb],LOCAL_REARRANGEMENT:-:[3967]],duplication AL357052.1 NA AL022068.1 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_SFKZSJN1 ARRIBA other 8 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_SFKZSJN1 ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_SFKZSJN1 ARRIBA in-frame 17 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_SFKZSJN1 ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:2984382 9:3053412 CARM1P1--CARM1P1 BS_SFKZSJN1 ARRIBA other 14 0 medium [SELFIE,INTRACHROMOSOMAL[chr9:0.15Mb]],duplication CARM1P1 NA CARM1P1 NA NA NA NA NA NA +10:12998338 10:13074100 CCDC3--CCDC3 BS_SFKZSJN1 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA +18:61507560 18:61500383 CDH20--CDH20 BS_SFKZSJN1 ARRIBA frameshift 15 2 low [SELFIE,INTRACHROMOSOMAL[chr18:0.22Mb]],duplication/non-canonical_splicing CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA +X:36285726 X:36228628 CFAP47--CFAP47 BS_SFKZSJN1 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +8:61376779 8:61299677 CLVS1--CLVS1 BS_SFKZSJN1 ARRIBA frameshift 9 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.44Mb]],duplication/non-canonical_splicing CLVS1 NA CLVS1 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_SFKZSJN1 ARRIBA other 51 5 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_SFKZSJN1 ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +6:83924592 6:83864175 CYB5R4--CYB5R4 BS_SFKZSJN1 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_SFKZSJN1 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_SFKZSJN1 ARRIBA in-frame 27 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +14:59456438 14:59551436 GPR135--CCDC175 BS_SFKZSJN1 ARRIBA other 2 1 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59565275 GPR135--CCDC175 BS_SFKZSJN1 ARRIBA other 1 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59540746 GPR135--CCDC175 BS_SFKZSJN1 ARRIBA other 1 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59540746 GPR135--CCDC175 BS_SFKZSJN1 ARRIBA other 1 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59525434 GPR135--CCDC175 BS_SFKZSJN1 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59521676 GPR135--CCDC175 BS_SFKZSJN1 ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_SFKZSJN1 ARRIBA frameshift 24 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_SFKZSJN1 ARRIBA frameshift 35 4 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_SFKZSJN1 ARRIBA frameshift 41 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +2:205999011 2:206095791 INO80D--AC007383.2(9227)/NDUFS1(19026) BS_SFKZSJN1 ARRIBA other 3 0 medium [],duplication INO80D NA AC007383.2 NDUFS1 NA NA NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_SFKZSJN1 ARRIBA other 8 3 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +2:8201947 2:8326424 LINC00298--LINC00299 BS_SFKZSJN1 ARRIBA other 2 1 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication LINC00298 NA LINC00299 NA NA NA NA NA NA +2:8201947 2:8245140 LINC00299--LINC00299 BS_SFKZSJN1 ARRIBA other 9 1 high [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA +18:42454989 18:42453932 LINC00907--LINC00907 BS_SFKZSJN1 ARRIBA other 11 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.53Mb]],duplication/non-canonical_splicing LINC00907 NA LINC00907 NA NA NA NA NA NA +12:25503738 12:25549546 LMNTD1--LMNTD1 BS_SFKZSJN1 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.24Mb]],duplication/non-canonical_splicing LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_SFKZSJN1 ARRIBA other 4 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +8:124555742 8:124558832 MTSS1--MTSS1 BS_SFKZSJN1 ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +2:1839149 2:1892287 MYT1L--MYT1L BS_SFKZSJN1 ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_SFKZSJN1 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96920125 12:96765077 NEDD1--CFAP54 BS_SFKZSJN1 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +15:75943572 15:76011286 NRG4--NRG4 BS_SFKZSJN1 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_SFKZSJN1 ARRIBA other 9 1 high [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_SFKZSJN1 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_SFKZSJN1 ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_SFKZSJN1 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_SFKZSJN1 ARRIBA other 83 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52142930 8:52172583 ST18--ST18 BS_SFKZSJN1 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_SFKZSJN1 ARRIBA other 10 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +3:167554683 3:167658326 WDR49--WDR49(4343)/PDCD10(24972) BS_SFKZSJN1 ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +11:67290446 11:67277272 ANKRD13D--GRK2 BS_SFRQXM76 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:+:[1991]],duplication ANKRD13D NA GRK2 NA NA Kinase NA NA NA +11:710486 20:1234085 EPS8L2--RAD21L1 BS_SFRQXM76 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr11--chr20]],translocation EPS8L2 NA RAD21L1 NA NA NA NA NA NA +11:33376889 11:21113589 HIPK3(19866)/AL137161.1(26327)--NELL1 BS_SFRQXM76 ARRIBA other 2 0 high [],duplication HIPK3 AL137161.1 NELL1 NA Kinase, Kinase NA NA NA NA +2:191396497 2:195756285 MYO1B--DNAH7 BS_SFRQXM76 ARRIBA in-frame 9 0 high [INTRACHROMOSOMAL[chr2:4.31Mb]],inversion MYO1B NA DNAH7 NA NA NA NA NA NA +2:191396497 2:195756285 MYO1B--DNAH7 BS_SFRQXM76 STARFUSION in-frame 9 0 NA [INTRACHROMOSOMAL[chr2:4.31Mb]] MYO1B NA DNAH7 NA NA NA NA NA NA +22:50285800 22:50395329 PLXNB2--PPP6R2 BS_SFRQXM76 ARRIBA frameshift 5 0 high [CCLE,INTRACHROMOSOMAL[chr22:0.04Mb],LOCAL_INVERSION:-:+:[35677]],duplication/5'-5' PLXNB2 NA PPP6R2 NA NA NA NA NA NA +12:57303176 12:51475374 R3HDM2--SLC4A8 BS_SFRQXM76 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr12:5.74Mb]],deletion/5'-5' R3HDM2 NA SLC4A8 NA NA NA NA NA NA +3:45709647 3:79457460 SACM1L--ROBO1 BS_SFRQXM76 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr3:32.85Mb]],deletion/5'-5' SACM1L NA ROBO1 NA NA TumorSuppressorGene, Oncogene NA NA NA +20:44503815 20:18024952 SERINC3--OVOL2 BS_SFRQXM76 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr20:26.44Mb]],deletion SERINC3 NA OVOL2 NA Oncogene TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_SHMC4902 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_SHMC4902 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_SHMC4902 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_SHMC4902 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_SHMC4902 ARRIBA other 2 2 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_SHMC4902 ARRIBA in-frame 9 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_SHMC4902 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_SHMC4902 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_SHMC4902 ARRIBA other 13 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_SKGJ5SY9 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_SKGJ5SY9 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:123682389 2:124221705 AC073409.1(237944)/AC092646.2(12913)--CNTNAP5 BS_SKGJ5SY9 ARRIBA other 10 2 high [],deletion AC073409.1 AC092646.2 CNTNAP5 NA NA NA NA NA NA +15:22360989 13:35109290 AC100757.2--NBEA BS_SKGJ5SY9 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr15--chr13]],translocation AC100757.2 NA NBEA NA NA CosmicCensus NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_SKGJ5SY9 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +6:65490594 6:65495993 EYS--EYS BS_SKGJ5SY9 ARRIBA frameshift 39 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +6:104843223 6:105124655 HACE1--BVES BS_SKGJ5SY9 ARRIBA frameshift 5 4 high [INTRACHROMOSOMAL[chr6:0.24Mb]],duplication HACE1 NA BVES NA TumorSuppressorGene NA NA NA NA +6:104843223 6:105116868 HACE1--BVES BS_SKGJ5SY9 ARRIBA in-frame 1 3 high [INTRACHROMOSOMAL[chr6:0.24Mb]],duplication HACE1 NA BVES NA TumorSuppressorGene NA NA NA NA +17:46152904 17:64898459 KANSL1--LRRC37A3 BS_SKGJ5SY9 ARRIBA frameshift 3 0 medium [GTEx,INTRACHROMOSOMAL[chr17:18.63Mb]],duplication KANSL1 NA LRRC37A3 NA NA NA NA NA NA +22:44699827 12:113154420 PRR5--CFAP73 BS_SKGJ5SY9 ARRIBA other 3 0 low [INTERCHROMOSOMAL[chr22--chr12]],translocation PRR5 NA CFAP73 NA TumorSuppressorGene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_SKGJ5SY9 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_SKGJ5SY9 ARRIBA other 13 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +12:125186866 12:103987050 TMEM132B--TDG BS_SKGJ5SY9 ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_SM8VQFPD ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_SM8VQFPD ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_SM8VQFPD ARRIBA in-frame 13 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_SM8VQFPD ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_SQX5E15Z ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_SQX5E15Z ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:178748404 3:178967365 KCNMB2-AS1--KCNMB2-AS1(106960)/ZMAT3(49858) BS_SQX5E15Z ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_SQX5E15Z ARRIBA other 4 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +10:94032252 10:93995694 PLCE1--PIPSL(34154)/PLCE1(35118) BS_SQX5E15Z ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_SQX5E15Z ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_SQX5E15Z ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995907 14:49862655 7SK--RN7SL2 BS_SXCZ3CXN STARFUSION other 11 21 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_SXCZ3CXN ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_SXCZ3CXN ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_SXCZ3CXN ARRIBA other 7 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_SXCZ3CXN STARFUSION other 17 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +11:46493608 11:50432353 AMBRA1--AC024405.1(10037)/OR4C50P(4159127) BS_SXCZ3CXN ARRIBA frameshift 9 0 high [],duplication AMBRA1 NA AC024405.1 OR4C50P NA NA NA NA NA +11:46493608 11:50494524 AMBRA1--AC024405.1(72208)/OR4C50P(4096956) BS_SXCZ3CXN ARRIBA frameshift 1 2 high [],duplication AMBRA1 NA AC024405.1 OR4C50P NA NA NA NA NA +11:118896245 11:107868278 BCL9L--SLC35F2 BS_SXCZ3CXN ARRIBA other 9 1 medium [INTRACHROMOSOMAL[chr11:10.97Mb]],deletion BCL9L NA SLC35F2 NA CosmicCensus NA NA NA NA +11:63764630 11:68407007 C11orf95--LRP5 BS_SXCZ3CXN ARRIBA frameshift 16 4 medium [INTRACHROMOSOMAL[chr11:4.54Mb]],inversion C11orf95 NA LRP5 NA NA Oncogene NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_SXCZ3CXN ARRIBA in-frame 468 177 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_SXCZ3CXN ARRIBA in-frame 144 5 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_SXCZ3CXN ARRIBA in-frame 6 2 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_SXCZ3CXN STARFUSION in-frame 481 211 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:834591 11:61357828 CD151--CYB561A3 BS_SXCZ3CXN ARRIBA other 18 1 high [INTRACHROMOSOMAL[chr11:60.51Mb]],inversion CD151 NA CYB561A3 NA Oncogene NA NA NA NA +11:833026 11:61357828 CD151--CYB561A3 BS_SXCZ3CXN ARRIBA other 22 0 medium [INTRACHROMOSOMAL[chr11:60.51Mb]],inversion CD151 NA CYB561A3 NA Oncogene NA NA NA NA +11:833026 11:61353992 CD151--CYB561A3 BS_SXCZ3CXN ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr11:60.51Mb]],inversion CD151 NA CYB561A3 NA Oncogene NA NA NA NA +11:833022 11:61357828 CD151--CYB561A3 BS_SXCZ3CXN ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr11:60.51Mb]],inversion CD151 NA CYB561A3 NA Oncogene NA NA NA NA +11:833026 11:61356728 CD151--CYB561A3 BS_SXCZ3CXN ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr11:60.51Mb]],inversion CD151 NA CYB561A3 NA Oncogene NA NA NA NA +11:833026 11:61357828 CD151--CYB561A3 BS_SXCZ3CXN STARFUSION other 22 2 NA [INTRACHROMOSOMAL[chr11:60.51Mb]] CD151 NA CYB561A3 NA Oncogene NA NA NA NA +11:834591 11:61357828 CD151--CYB561A3 BS_SXCZ3CXN STARFUSION other 21 2 NA [INTRACHROMOSOMAL[chr11:60.51Mb]] CD151 NA CYB561A3 NA Oncogene NA NA NA NA +11:834631 11:61385396 CD151--TMEM138(15887)/TMEM216(6291) BS_SXCZ3CXN ARRIBA other 3 2 medium [],inversion CD151 NA TMEM138 TMEM216 Oncogene NA NA NA NA +11:47565274 11:123750220 CELF1--ZNF202(8545)/OR6X1(3268) BS_SXCZ3CXN ARRIBA other 2 0 low [],duplication CELF1 NA ZNF202 OR6X1 NA TranscriptionFactor NA NA NA +11:118896245 11:107868278 CXCR5--SLC35F2 BS_SXCZ3CXN ARRIBA other 9 1 medium [INTRACHROMOSOMAL[chr11:10.96Mb]],deletion/3'-3' CXCR5 NA SLC35F2 NA NA NA NA NA NA +3:57382262 3:57385429 DNAH12--DNAH12 BS_SXCZ3CXN ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +11:59195369 11:3545258 DTX4--AC127526.4 BS_SXCZ3CXN ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr11:55.59Mb]],duplication/5'-5' DTX4 NA AC127526.4 NA NA NA NA NA NA +11:64874421 11:107548169 EHD1--ALKBH8 BS_SXCZ3CXN ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr11:42.61Mb]],inversion/5'-5' EHD1 NA ALKBH8 NA NA NA NA NA NA +7:128683255 7:128669922 FAM71F2--AC018638.3(30)/FAM71F2(2366) BS_SXCZ3CXN ARRIBA frameshift 2 0 medium [],duplication FAM71F2 NA AC018638.3 FAM71F2 NA NA NA NA NA +1:15369502 1:15367463 FHAD1--FHAD1 BS_SXCZ3CXN ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA +11:120940460 11:108138898 GRIK4--ACAT1 BS_SXCZ3CXN ARRIBA in-frame 6 1 high [INTRACHROMOSOMAL[chr11:12.36Mb]],duplication GRIK4 NA ACAT1 NA NA NA NA NA NA +11:120956953 11:108138898 GRIK4--ACAT1 BS_SXCZ3CXN ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr11:12.36Mb]],duplication GRIK4 NA ACAT1 NA NA NA NA NA NA +12:112161341 11:2397124 HECTD4--CD81 BS_SXCZ3CXN STARFUSION other 18 1 NA [INTERCHROMOSOMAL[chr12--chr11]] HECTD4 NA CD81 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_SXCZ3CXN ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +14:100949596 14:100913432 MEG8--MEG8 BS_SXCZ3CXN ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA +11:64685646 11:116738420 NRXN2--AP000770.1(80168)/BUD13(9750) BS_SXCZ3CXN ARRIBA frameshift 11 0 high [],inversion NRXN2 NA AP000770.1 BUD13 Oncogene NA NA NA NA +11:64685646 11:116738420 NRXN2--BUD13 BS_SXCZ3CXN ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr11:52.02Mb]],inversion/5'-5' NRXN2 NA BUD13 NA Oncogene NA NA NA NA +11:66952430 11:116144763 PC--AP000797.1(193272)/LINC02151(352136) BS_SXCZ3CXN ARRIBA other 3 0 high [],duplication PC NA AP000797.1 LINC02151 NA NA NA NA NA +11:45945840 11:90725813 PHF21A--DISC1FP1 BS_SXCZ3CXN ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr11:44.13Mb]],duplication/5'-5' PHF21A NA DISC1FP1 NA TranscriptionFactor NA NA NA NA +10:94032252 10:94017339 PLCE1--PIPSL(55799)/PLCE1(13473) BS_SXCZ3CXN ARRIBA frameshift 2 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_SXCZ3CXN ARRIBA frameshift 3 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_SXCZ3CXN ARRIBA frameshift 3 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +12:106750793 12:106686884 RFX4--RFX4 BS_SXCZ3CXN ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_SXCZ3CXN ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:63759461 11:53702307 RTN3--AC024405.1(3279991)/OR4C50P(889173) BS_SXCZ3CXN ARRIBA other 3 0 medium [],duplication RTN3 NA AC024405.1 OR4C50P NA NA NA NA NA +11:66068577 11:63759473 SF3B2--RTN3 BS_SXCZ3CXN ARRIBA frameshift 90 18 high [INTRACHROMOSOMAL[chr11:2.29Mb]],duplication SF3B2 NA RTN3 NA NA NA NA NA NA +11:66068577 11:63759473 SF3B2--RTN3 BS_SXCZ3CXN STARFUSION other 91 18 NA [INTRACHROMOSOMAL[chr11:2.29Mb]] SF3B2 NA RTN3 NA NA NA NA NA NA +11:66068333 11:63759555 SF3B2--RTN3 BS_SXCZ3CXN STARFUSION other 15 18 NA [INTRACHROMOSOMAL[chr11:2.29Mb]] SF3B2 NA RTN3 NA NA NA NA NA NA +11:62881916 11:64103194 SLC3A2--AP000721.2 BS_SXCZ3CXN ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr11:1.15Mb]],inversion/3'-3' SLC3A2 NA AP000721.2 NA NA NA NA NA NA +11:113341925 11:114754056 TTC12--NXPE2(47123)/ACA59(374162) BS_SXCZ3CXN ARRIBA frameshift 18 1 high [],inversion TTC12 NA NXPE2 ACA59 NA NA NA NA NA +17:18804266 17:15440285 TVP23B--CDRT4 BS_SXCZ3CXN ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_SXRS2P6T ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_SXRS2P6T ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:92080720 1:91806792 AC104836.1--TGFBR3 BS_SXRS2P6T ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr1:0.17Mb]],duplication/5'-5' AC104836.1 NA TGFBR3 NA NA TumorSuppressorGene, Oncogene NA NA NA +1:92080720 1:91806792 BTBD8--TGFBR3 BS_SXRS2P6T ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr1:0.17Mb]],duplication/5'-5' BTBD8 NA TGFBR3 NA NA TumorSuppressorGene, Oncogene NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_SXRS2P6T ARRIBA in-frame 14 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138867975 7:140787584 KIAA1549--BRAF BS_SXRS2P6T STARFUSION in-frame 14 2 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_SXRS2P6T ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:91861471 1:92066521 TGFBR3--LPCAT2BP BS_SXRS2P6T ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr1:0.16Mb]],duplication/5'-5' TGFBR3 NA LPCAT2BP NA TumorSuppressorGene, Oncogene NA NA NA NA +1:91861471 1:92075487 TGFBR3--SETSIP BS_SXRS2P6T ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr1:0.17Mb]],duplication TGFBR3 NA SETSIP NA TumorSuppressorGene, Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_T0RKFEKR ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_T0RKFEKR ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:20343246 14:49862658 AL355075.4--RN7SL2 BS_T0RKFEKR STARFUSION other 3 8 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] AL355075.4 NA RN7SL2 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_T0RKFEKR STARFUSION other 48 15 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_T0RKFEKR ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +3:178748404 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_T0RKFEKR ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_T0RKFEKR ARRIBA in-frame 2 0 medium [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +14:20343246 14:49862658 RPPH1--RN7SL2 BS_T0RKFEKR STARFUSION other 3 8 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RPPH1 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_T0RKFEKR ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:66690316 1:66677004 SGIP1--SGIP1 BS_T0RKFEKR ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SGIP1 NA SGIP1 NA NA NA NA NA NA +6:52995906 14:49862670 7SK--RN7SL2 BS_T1DVKKJB STARFUSION other 9 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995906 14:49862839 7SK--RN7SL2 BS_T1DVKKJB STARFUSION other 5 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995780 14:49862665 7SK--RN7SL2 BS_T1DVKKJB STARFUSION other 4 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_T1DVKKJB ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_T1DVKKJB ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:72414815 4:72442216 ADAMTS3--ADAMTS3 BS_T1DVKKJB ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.29Mb]],duplication/non-canonical_splicing ADAMTS3 NA ADAMTS3 NA NA NA NA NA NA +21:43982475 11:35167805 AGPAT3--CD44 BS_T1DVKKJB ARRIBA frameshift 1 2 medium [INTERCHROMOSOMAL[chr21--chr11]],translocation AGPAT3 NA CD44 NA NA TumorSuppressorGene, Oncogene NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_T1DVKKJB ARRIBA in-frame 600 211 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_T1DVKKJB ARRIBA in-frame 21 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63768484 11:65662205 C11orf95--RELA BS_T1DVKKJB ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_T1DVKKJB ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_T1DVKKJB STARFUSION in-frame 773 261 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:31064469 11:31065153 DCDC1--DCDC1 BS_T1DVKKJB ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.54Mb]],duplication/non-canonical_splicing DCDC1 NA DCDC1 NA NA NA NA NA NA +1:219218712 1:219210532 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_T1DVKKJB ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +10:94032252 10:93995694 PLCE1--PIPSL(34154)/PLCE1(35118) BS_T1DVKKJB ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_T1DVKKJB ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_T1DVKKJB ARRIBA other 4 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +14:20343152 14:49862665 AL355075.4--RN7SL2 BS_T1QMEH1N STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] AL355075.4 NA RN7SL2 NA NA NA NA NA NA +14:20343152 14:49862665 RPPH1--RN7SL2 BS_T1QMEH1N STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RPPH1 NA RN7SL2 NA NA NA NA NA NA +16:89536864 3:107805982 SPG7--BBX BS_T1QMEH1N ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr16--chr3]],translocation SPG7 NA BBX NA NA TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_T1W4JA94 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_T1W4JA94 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:35743965 3:35729303 ARPP21--ARPP21 BS_T1W4JA94 ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr3:0.16Mb]],duplication/non-canonical_splicing ARPP21 NA ARPP21 NA NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_T1W4JA94 ARRIBA in-frame 5 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_T1W4JA94 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_T1W4JA94 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_T1YHK6B7 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_T1YHK6B7 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_T1YHK6B7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +19:35782869 19:35557847 ARHGAP33--ATP4A BS_T1YHK6B7 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr19:0.21Mb]],inversion ARHGAP33 NA ATP4A NA NA NA NA NA NA +7:45000363 7:38436388 CCM2--AMPH BS_T1YHK6B7 ARRIBA in-frame 6 0 high [INTRACHROMOSOMAL[chr7:6.37Mb]],inversion CCM2 NA AMPH NA NA NA NA NA NA +7:40078851 7:117081072 CDK13--ST7-AS2 BS_T1YHK6B7 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:76.97Mb]],inversion CDK13 NA ST7-AS2 NA Kinase NA NA NA NA +11:14476919 11:12957692 COPB1--TEAD1(13209)/LINC00958(4150) BS_T1YHK6B7 ARRIBA frameshift 2 0 medium [],inversion COPB1 NA TEAD1 LINC00958 NA TranscriptionFactor NA NA NA +1:92563642 10:8573400 EVI5--KRT8P37(58294)/CHCHD3P1(46533) BS_T1YHK6B7 ARRIBA frameshift 2 0 medium [],translocation EVI5 NA KRT8P37 CHCHD3P1 NA NA NA NA NA +11:78417646 11:57596415 GAB2--RPS4XP13(19335)/SERPING1(972) BS_T1YHK6B7 ARRIBA frameshift 9 0 medium [],inversion GAB2 NA RPS4XP13 SERPING1 Oncogene NA NA NA NA +11:78417646 11:57598249 GAB2--SERPING1 BS_T1YHK6B7 ARRIBA frameshift 29 6 high [INTRACHROMOSOMAL[chr11:20.60Mb]],inversion GAB2 NA SERPING1 NA Oncogene NA NA NA NA +11:78417646 11:57602035 GAB2--SERPING1 BS_T1YHK6B7 ARRIBA frameshift 42 5 medium [INTRACHROMOSOMAL[chr11:20.60Mb]],inversion GAB2 NA SERPING1 NA Oncogene NA NA NA NA +11:78417646 11:57599879 GAB2--SERPING1 BS_T1YHK6B7 ARRIBA in-frame 21 5 medium [INTRACHROMOSOMAL[chr11:20.60Mb]],inversion GAB2 NA SERPING1 NA Oncogene NA NA NA NA +11:78364016 11:57602035 GAB2--SERPING1 BS_T1YHK6B7 ARRIBA in-frame 7 6 medium [INTRACHROMOSOMAL[chr11:20.60Mb]],inversion GAB2 NA SERPING1 NA Oncogene NA NA NA NA +11:78364016 11:57599879 GAB2--SERPING1 BS_T1YHK6B7 ARRIBA other 1 6 medium [INTRACHROMOSOMAL[chr11:20.60Mb]],inversion GAB2 NA SERPING1 NA Oncogene NA NA NA NA +11:78417646 11:57611717 GAB2--SERPING1 BS_T1YHK6B7 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr11:20.60Mb]],inversion GAB2 NA SERPING1 NA Oncogene NA NA NA NA +11:78417646 11:57602035 GAB2--SERPING1 BS_T1YHK6B7 STARFUSION in-frame 44 11 NA [INTRACHROMOSOMAL[chr11:20.60Mb]] GAB2 NA SERPING1 NA Oncogene NA NA NA NA +11:78417646 11:57598249 GAB2--SERPING1 BS_T1YHK6B7 STARFUSION frameshift 29 11 NA [INTRACHROMOSOMAL[chr11:20.60Mb]] GAB2 NA SERPING1 NA Oncogene NA NA NA NA +11:78417646 11:57599879 GAB2--SERPING1 BS_T1YHK6B7 STARFUSION in-frame 23 11 NA [INTRACHROMOSOMAL[chr11:20.60Mb]] GAB2 NA SERPING1 NA Oncogene NA NA NA NA +11:78417646 11:57596415 GAB2--SERPING1 BS_T1YHK6B7 STARFUSION other 12 11 NA [INTRACHROMOSOMAL[chr11:20.60Mb]] GAB2 NA SERPING1 NA Oncogene NA NA NA NA +11:78364016 11:57602035 GAB2--SERPING1 BS_T1YHK6B7 STARFUSION other 7 11 NA [INTRACHROMOSOMAL[chr11:20.60Mb]] GAB2 NA SERPING1 NA Oncogene NA NA NA NA +2:8312726 2:8421675 LINC00299--LINC00299(38054)/AC011747.2(121917) BS_T1YHK6B7 ARRIBA other 1 0 low [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA +11:78559539 11:113579056 NARS2--DRD2(103365)/TMPRSS5(108494) BS_T1YHK6B7 ARRIBA frameshift 4 1 high [],inversion NARS2 NA DRD2 TMPRSS5 NA NA NA NA NA +11:14358763 11:15149130 RRAS2--INSC BS_T1YHK6B7 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr11:0.75Mb]],inversion RRAS2 NA INSC NA Oncogene NA NA NA NA +11:14358763 11:15175741 RRAS2--INSC BS_T1YHK6B7 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:0.75Mb]],inversion RRAS2 NA INSC NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_T1YHK6B7 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:116953691 7:31828373 ST7--PDE1C BS_T1YHK6B7 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr7:84.65Mb]],inversion ST7 NA PDE1C NA TumorSuppressorGene NA NA NA NA +7:117020629 7:31828373 ST7--PDE1C BS_T1YHK6B7 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:84.65Mb]],inversion ST7 NA PDE1C NA TumorSuppressorGene NA NA NA NA +7:117080865 7:122554689 ST7-AS2--CADPS2 BS_T1YHK6B7 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr7:5.17Mb]],duplication ST7-AS2 NA CADPS2 NA NA Oncogene NA NA NA +19:39459249 19:41787133 SUPT5H--AC243967.2(240)/CEACAM3(9304) BS_T1YHK6B7 ARRIBA frameshift 5 0 high [],deletion SUPT5H NA AC243967.2 CEACAM3 NA NA NA NA NA +4:153550141 8:5612534 TMEM131L--AC004944.1(103408)/AC084768.1(47145) BS_T1YHK6B7 ARRIBA frameshift 5 0 high [],translocation TMEM131L NA AC004944.1 AC084768.1 NA NA NA NA NA +7:139064879 7:148383649 ZC3HAV1--CNTNAP2 BS_T1YHK6B7 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:7.01Mb]],inversion ZC3HAV1 NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA +6:52995909 14:49862666 7SK--RN7SL2 BS_T2QPMZCM STARFUSION other 6 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995790 14:49862669 7SK--RN7SL2 BS_T2QPMZCM STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995910 14:49862709 7SK--RN7SL2 BS_T2QPMZCM STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_T2QPMZCM ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_T2QPMZCM ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_T2QPMZCM ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_T2QPMZCM ARRIBA other 3 2 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +3:37416724 3:37385141 C3orf35--GOLGA4(18390)/C3orf35(1128) BS_T2QPMZCM ARRIBA other 1 0 low [],duplication C3orf35 NA GOLGA4 C3orf35 NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_T2QPMZCM ARRIBA other 13 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_T2QPMZCM ARRIBA in-frame 15 4 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +2:206046504 2:206095791 INO80D--AC007383.2(9227)/NDUFS1(19026) BS_T2QPMZCM ARRIBA frameshift 1 0 low [],duplication INO80D NA AC007383.2 NDUFS1 NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_T2QPMZCM ARRIBA other 2 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +14:49862574 6:52995790 RN7SL2--7SK BS_T2QPMZCM STARFUSION other 4 14 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_T2QPMZCM ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_T2QPMZCM ARRIBA other 4 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +12:125186866 12:103987050 TMEM132B--TDG BS_T2QPMZCM ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA +6:52995911 14:49586640 7SK--AL139099.5 BS_T3H5AY8A STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL139099.5 NA NA NA NA NA NA +6:52995911 14:49586640 7SK--RN7SL1 BS_T3H5AY8A STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_T3H5AY8A ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_T3H5AY8A ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:35657883 14:20343380 RMRP--AL355075.4 BS_T3H5AY8A STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL355075.4 NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_T3H5AY8A ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_T4JFN54G ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_T4JFN54G ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_T4JFN54G STARFUSION other 3 7 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_T4JFN54G ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_T4P3J13C ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_T4P3J13C ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_T4P3J13C ARRIBA other 4 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_T4P3J13C ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +20:54610523 20:54554933 DOK5--DOK5 BS_T4P3J13C ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_T4P3J13C ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_T4P3J13C ARRIBA frameshift 2 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +12:85244909 12:85152280 LRRIQ1--LRRIQ1 BS_T4P3J13C ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.23Mb]],duplication/non-canonical_splicing LRRIQ1 NA LRRIQ1 NA NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_T4P3J13C ARRIBA frameshift 6 3 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_T4P3J13C ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_T4P3J13C ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_T4P3J13C ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_T55Y4Z0Y ARRIBA other 41 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_T55Y4Z0Y ARRIBA other 41 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:48809641 2:48797526 AC009975.1--ELOBP3(16631)/AC009975.1(11814) BS_T55Y4Z0Y ARRIBA other 2 2 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_T55Y4Z0Y ARRIBA other 11 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +1:181511510 1:181483744 CACNA1E--CACNA1E BS_T55Y4Z0Y ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_T55Y4Z0Y ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_T55Y4Z0Y ARRIBA other 6 0 low [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +3:178859489 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_T55Y4Z0Y ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +5:112142197 5:111735507 NREP-AS1(124888)/EPB41L4A(244)--NREP BS_T55Y4Z0Y ARRIBA other 3 0 medium [],deletion NREP-AS1 EPB41L4A NREP NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_T55Y4Z0Y ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_T55Y4Z0Y ARRIBA other 41 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_TA9WP4TH ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +17:38256898 5:179652294 AC244154.1--AC136604.1 BS_TA9WP4TH ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr17--chr5]],translocation AC244154.1 NA AC136604.1 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_TA9WP4TH ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +13:26254769 13:72512599 CDK8--SNORA68(51998)/uc_338(54614) BS_TA9WP4TH ARRIBA frameshift 4 0 high [],deletion CDK8 NA SNORA68 uc_338 Kinase, Kinase NA NA NA NA +13:26254769 13:72681448 CDK8--SNORA9(94638)/RPL21P110(22245) BS_TA9WP4TH ARRIBA frameshift 3 0 high [],deletion CDK8 NA SNORA9 RPL21P110 Kinase, Kinase NA NA NA NA +19:1941418 19:1997463 CSNK1G2--BTBD2 BS_TA9WP4TH ARRIBA other 2 0 low [CCLE,INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_INVERSION:+:-:[4100]],inversion CSNK1G2 NA BTBD2 NA Kinase NA NA NA NA +5:16754828 5:16818167 MYO10--MYO10 BS_TA9WP4TH ARRIBA in-frame 18 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.27Mb]],duplication/non-canonical_splicing MYO10 NA MYO10 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_TA9WP4TH ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +19:2841575 19:2832303 ZNF555--ZNF554 BS_TA9WP4TH ARRIBA frameshift 3 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.01Mb],LOCAL_REARRANGEMENT:+:[5662]],duplication ZNF555 NA ZNF554 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_TAHV8N04 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_TAHV8N04 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_TAHV8N04 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +1:48055196 1:48011530 AL356289.1--TRABD2B(14635)/AL356289.1(39129) BS_TAHV8N04 ARRIBA other 4 0 high [],duplication AL356289.1 NA TRABD2B AL356289.1 NA NA NA NA NA +12:32306122 12:32305697 BICD1--BICD1 BS_TAHV8N04 ARRIBA in-frame 18 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing BICD1 NA BICD1 NA NA NA NA NA NA +4:161455004 4:161500134 FSTL5--FSTL5 BS_TAHV8N04 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_TAHV8N04 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_TBWYAFSM ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_TBWYAFSM ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_TBWYAFSM STARFUSION other 16 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_TBWYAFSM ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +1:62866598 1:62803719 ATG4C(1085)/AC099794.1(29411)--ATG4C BS_TBWYAFSM ARRIBA other 4 0 medium [],duplication ATG4C AC099794.1 ATG4C NA NA NA NA NA NA +4:3029476 4:2941582 GRK4--NOP14-AS1 BS_TBWYAFSM STARFUSION other 19 3 NA [INTRACHROMOSOMAL[chr4:0.00Mb],LOCAL_REARRANGEMENT:+:[1870]] GRK4 NA NOP14-AS1 NA Kinase NA NA NA NA +2:216674078 14:49586588 IGFBP5--AL139099.5 BS_TBWYAFSM STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr2--chr14]] IGFBP5 NA AL139099.5 NA TumorSuppressorGene, Oncogene NA NA NA NA +2:216674079 14:49586591 IGFBP5--RN7SL1 BS_TBWYAFSM STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr2--chr14]] IGFBP5 NA RN7SL1 NA TumorSuppressorGene, Oncogene NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_TBWYAFSM ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96920125 12:96540837 NEDD1--CFAP54 BS_TBWYAFSM ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96920125 12:96764151 NEDD1--CFAP54 BS_TBWYAFSM ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96920125 12:96875118 NEDD1--CFAP54 BS_TBWYAFSM ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +4:2941582 4:3029476 NOP14--GRK4 BS_TBWYAFSM ARRIBA frameshift 28 4 high [INTRACHROMOSOMAL[chr4:0.00Mb],LOCAL_INVERSION:-:+:[223]],duplication/5'-5' NOP14 NA GRK4 NA NA Kinase NA NA NA +6:52995913 14:49586587 RN7SK--AL139099.5 BS_TBWYAFSM STARFUSION other 7 8 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA AL139099.5 NA NA NA NA NA NA +3:77568434 3:77546338 ROBO2--ROBO2 BS_TBWYAFSM ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_TBWYAFSM ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:26764737 4:26735455 TBC1D19(9386)/STIM2(92941)--TBC1D19 BS_TBWYAFSM ARRIBA other 1 0 low [],duplication TBC1D19 STIM2 TBC1D19 NA NA NA NA NA NA +14:37701526 14:37680151 TTC6--TTC6 BS_TBWYAFSM ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_TCGEZJ5F ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_TCGEZJ5F ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +13:101345301 13:101399165 NALCN--NALCN BS_TCGEZJ5F ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.36Mb]],duplication/non-canonical_splicing NALCN NA NALCN NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_TCGEZJ5F ARRIBA other 20 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_TCGEZJ5F ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +12:125186866 12:103987050 TMEM132B--TDG BS_TCGEZJ5F ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TMEM132B NA TDG NA NA NA NA NA NA +6:52995909 14:49862666 7SK--RN7SL2 BS_TD1ZEQ7R STARFUSION other 6 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995864 14:49862666 7SK--RN7SL2 BS_TD1ZEQ7R STARFUSION other 5 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_TD1ZEQ7R ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_TD1ZEQ7R ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_TD1ZEQ7R ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19751271 13:19835689 PSPC1--ZMYM5 BS_TD1ZEQ7R ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_TD1ZEQ7R ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +14:49862561 6:52995628 RN7SL2--7SK BS_TD1ZEQ7R STARFUSION other 5 9 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_TD1ZEQ7R ARRIBA other 35 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_TD1ZEQ7R ARRIBA in-frame 3 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_TDEFAPNH ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_TDEFAPNH ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:20343258 14:49586588 AL355075.4--AL139099.5 BS_TDEFAPNH STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA AL139099.5 NA NA NA NA NA NA +14:20343083 14:49586777 AL355075.4--AL139099.5 BS_TDEFAPNH STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA AL139099.5 NA NA NA NA NA NA +14:20343079 14:49586776 AL355075.4--RN7SL1 BS_TDEFAPNH STARFUSION other 4 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA RN7SL1 NA NA NA NA NA NA +14:20343258 14:49586588 AL355075.4--RN7SL1 BS_TDEFAPNH STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA RN7SL1 NA NA NA NA NA NA +18:79253541 18:79193183 ATP9B--ATP9B BS_TDEFAPNH ARRIBA frameshift 6 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_TDEFAPNH ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:22127402 9:22112320 CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_TDEFAPNH ARRIBA other 2 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_TDEFAPNH ARRIBA in-frame 12 3 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +6:83924592 6:83864175 CYB5R4--CYB5R4 BS_TDEFAPNH ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_TDEFAPNH ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +8:38413918 8:38836162 FGFR1--TACC1 BS_TDEFAPNH ARRIBA in-frame 119 13 high [ChimerSeq,ChimerKB,Cosmic,INTRACHROMOSOMAL[chr8:0.26Mb]],inversion FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA +8:38413918 8:38836162 FGFR1--TACC1 BS_TDEFAPNH STARFUSION in-frame 121 16 NA [ChimerSeq,ChimerKB,Cosmic,INTRACHROMOSOMAL[chr8:0.26Mb]] FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA +1:74492266 1:74439490 FPGT-TNNI3K--FPGT-TNNI3K BS_TDEFAPNH ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA +9:127325095 9:127291168 GARNL3--GARNL3 BS_TDEFAPNH ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.17Mb]],duplication/non-canonical_splicing GARNL3 NA GARNL3 NA NA NA NA NA NA +7:127242695 7:127243515 GRM8--GRM8 BS_TDEFAPNH ARRIBA frameshift 5 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +6:114469299 6:114371592 HDAC2-AS2--HDAC2-AS2 BS_TDEFAPNH ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_TDEFAPNH ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_TDEFAPNH ARRIBA frameshift 8 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_TDEFAPNH ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +8:17341363 8:17373240 MTMR7--MTMR7 BS_TDEFAPNH ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA +2:1839149 2:1892287 MYT1L--MYT1L BS_TDEFAPNH ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_TDEFAPNH ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +3:77602491 3:77564954 ROBO2--ROBO2 BS_TDEFAPNH ARRIBA frameshift 17 1 low [SELFIE,INTRACHROMOSOMAL[chr3:1.74Mb]],duplication/non-canonical_splicing ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA +14:20343083 14:49586777 RPPH1--AL139099.5 BS_TDEFAPNH STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA AL139099.5 NA NA NA NA NA NA +14:20343258 14:49586588 RPPH1--AL139099.5 BS_TDEFAPNH STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA AL139099.5 NA NA NA NA NA NA +14:20343258 14:49586588 RPPH1--RN7SL1 BS_TDEFAPNH STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA RN7SL1 NA NA NA NA NA NA +14:20343082 14:49586777 RPPH1--RN7SL1 BS_TDEFAPNH STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_TDEFAPNH ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_TDEFAPNH ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +8:38831177 8:38412595 TACC1--FGFR1 BS_TDEFAPNH ARRIBA frameshift 3 0 medium [GTEx,INTRACHROMOSOMAL[chr8:0.26Mb]],inversion TACC1 NA FGFR1 NA Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +1:74492266 1:74439490 TNNI3K--TNNI3K BS_TDEFAPNH ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.31Mb]],duplication/non-canonical_splicing TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA +17:18804266 17:15440285 TVP23B--CDRT4 BS_TDEFAPNH ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA +7:19609322 7:19576287 AC007091.1(30716)/TWISTNB(86140)--AC007091.1 BS_TE0GVDNG ARRIBA other 9 1 high [],duplication AC007091.1 TWISTNB AC007091.1 NA NA NA NA NA NA +5:91102340 5:90781430 ADGRV1--ADGRV1 BS_TE0GVDNG ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_TE0GVDNG ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +1:161863312 1:161791408 ATF6--ATF6 BS_TE0GVDNG ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.20Mb]],duplication/non-canonical_splicing ATF6 NA ATF6 NA TranscriptionFactor TranscriptionFactor NA NA NA +6:65490594 6:65495993 EYS--EYS BS_TE0GVDNG ARRIBA frameshift 25 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +18:70336140 18:70324543 LINC01909--SOCS6 BS_TE0GVDNG ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr18:0.01Mb],LOCAL_REARRANGEMENT:+:[5239]],duplication LINC01909 NA SOCS6 NA NA NA NA NA NA +1:114947320 1:114923449 SYCP1--SYCP1 BS_TE0GVDNG ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_TG93XC55 ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_TG93XC55 ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_TG93XC55 ARRIBA other 9 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_TG93XC55 ARRIBA other 5 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +6:108447296 6:108355654 AFG1L--AFG1L BS_TG93XC55 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.23Mb]],duplication/non-canonical_splicing AFG1L NA AFG1L NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_TG93XC55 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +X:33725628 X:33020200 AL050305.1(313455)/AL591501.1(880)--DMD BS_TG93XC55 ARRIBA other 3 0 high [],deletion AL050305.1 AL591501.1 DMD NA NA TumorSuppressorGene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_TG93XC55 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_TG93XC55 ARRIBA frameshift 25 7 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_TG93XC55 ARRIBA frameshift 13 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_TG93XC55 ARRIBA in-frame 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_TG93XC55 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_TG93XC55 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211107377 AL590132.1--KCNH1 BS_TG93XC55 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211103496 1:211107377 AL590132.1--KCNH1 BS_TG93XC55 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211103602 AL590132.1--KCNH1 BS_TG93XC55 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +10:101889412 10:101995355 C10orf76--C10orf76 BS_TG93XC55 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.21Mb]],duplication/non-canonical_splicing C10orf76 NA C10orf76 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_TG93XC55 ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_TG93XC55 ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_TG93XC55 ARRIBA frameshift 21 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +2:195957261 2:195987193 DNAH7--DNAH7 BS_TG93XC55 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA +X:47649921 X:47652144 ELK1--UXT BS_TG93XC55 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:-:[1194]],duplication ELK1 NA UXT NA Oncogene, TranscriptionFactor NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_TG93XC55 ARRIBA in-frame 120 18 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:74492266 1:74439490 FPGT-TNNI3K--FPGT-TNNI3K BS_TG93XC55 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_TG93XC55 ARRIBA frameshift 19 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34091883 6:34133859 GRM4--GRM4 BS_TG93XC55 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_TG93XC55 ARRIBA in-frame 6 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_TG93XC55 ARRIBA frameshift 25 7 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_TG93XC55 ARRIBA frameshift 4 5 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_TG93XC55 ARRIBA in-frame 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211103496 1:211107377 KCNH1--AL590132.1 BS_TG93XC55 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211103602 KCNH1--AL590132.1 BS_TG93XC55 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_TG93XC55 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_TG93XC55 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_TG93XC55 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_TG93XC55 ARRIBA frameshift 13 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_TG93XC55 ARRIBA in-frame 4 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211107377 KCNH1--AL590132.1 BS_TG93XC55 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211082898 KCNH1--AL590132.1 BS_TG93XC55 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_TG93XC55 ARRIBA frameshift 25 7 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_TG93XC55 ARRIBA frameshift 21 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_TG93XC55 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +1:196373140 1:196479238 KCNT2--KCNT2 BS_TG93XC55 ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_TG93XC55 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_TG93XC55 ARRIBA other 8 6 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_TG93XC55 ARRIBA frameshift 20 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +10:45459740 10:45461411 MARCH8--MARCH8 BS_TG93XC55 ARRIBA frameshift 4 0 medium [SELFIE,INTRACHROMOSOMAL[chr10:0.14Mb]],duplication MARCH8 NA MARCH8 NA NA NA NA NA NA +14:46920012 14:47035304 MDGA2--MDGA2 BS_TG93XC55 ARRIBA frameshift 13 3 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +8:17341363 8:17373240 MTMR7--MTMR7 BS_TG93XC55 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_TG93XC55 ARRIBA other 11 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +8:2492872 8:2494091 MYOM2(327320)/AC245519.1(1004)--AC245519.1 BS_TG93XC55 ARRIBA other 15 1 high [],duplication MYOM2 AC245519.1 AC245519.1 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_TG93XC55 ARRIBA in-frame 21 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +7:77951712 7:77920279 PHTF2--PHTF2 BS_TG93XC55 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_TG93XC55 ARRIBA in-frame 35 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +X:18761576 X:18730181 PPEF1--PPEF1 BS_TG93XC55 ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing PPEF1 NA PPEF1 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_TG93XC55 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_TG93XC55 ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:158617205 4:158607972 RXFP1--RXFP1 BS_TG93XC55 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_TG93XC55 ARRIBA in-frame 8 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_TG93XC55 ARRIBA other 2 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_TG93XC55 ARRIBA other 3 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +1:74492266 1:74439490 TNNI3K--TNNI3K BS_TG93XC55 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.31Mb]],duplication/non-canonical_splicing TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA +9:15203823 9:15226012 TTC39B--TTC39B BS_TG93XC55 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing TTC39B NA TTC39B NA Oncogene Oncogene NA NA NA +1:88528836 1:88570859 uc_338(8666)/PKN2-AS1(8677)--PKN2-AS1 BS_TG93XC55 ARRIBA other 2 1 medium [],duplication uc_338 PKN2-AS1 PKN2-AS1 NA NA NA NA NA NA +19:17300856 4:47320127 ABHD8--GABRB1 BS_TGS109T3 ARRIBA in-frame 27 2 high [INTERCHROMOSOMAL[chr19--chr4]],translocation ABHD8 NA GABRB1 NA NA NA NA NA NA +19:17300856 4:47320127 ABHD8--GABRB1 BS_TGS109T3 STARFUSION in-frame 31 2 NA [INTERCHROMOSOMAL[chr19--chr4]] ABHD8 NA GABRB1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_TGS109T3 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_TGS109T3 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:45195516 4:55411614 AC108467.1(143864)/THAP12P9(127737)--TMEM165 BS_TGS109T3 ARRIBA other 2 0 low [],deletion AC108467.1 THAP12P9 TMEM165 NA NA NA NA NA NA +9:87759212 20:4175030 AL160279.1(17259)/CTSL3P(13241)--SMOX BS_TGS109T3 ARRIBA other 3 0 medium [],translocation AL160279.1 CTSL3P SMOX NA NA NA NA NA NA +1:181037 17:68917396 AL627309.5(7175)/FO538757.2(1659)--ABCA8 BS_TGS109T3 ARRIBA other 3 0 low [],translocation AL627309.5 FO538757.2 ABCA8 NA NA NA NA NA NA +4:73085249 4:45340771 ANKRD17--THAP12P9(14743)/AC108043.1(73566) BS_TGS109T3 ARRIBA frameshift 26 0 high [],deletion ANKRD17 NA THAP12P9 AC108043.1 NA NA NA NA NA +4:47536938 4:47523012 ATP10D--ATP10D BS_TGS109T3 ARRIBA frameshift 42 5 low [SELFIE,INTRACHROMOSOMAL[chr4:0.11Mb]],duplication/non-canonical_splicing ATP10D NA ATP10D NA NA NA NA NA NA +4:55546782 4:47523012 CLOCK--ATP10D BS_TGS109T3 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr4:7.83Mb]],inversion CLOCK NA ATP10D NA TranscriptionFactor NA NA NA NA +4:55546482 4:47523012 CLOCK--ATP10D BS_TGS109T3 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr4:7.83Mb]],inversion CLOCK NA ATP10D NA TranscriptionFactor NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_TGS109T3 ARRIBA other 9 1 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +7:127242695 7:127243515 GRM8--GRM8 BS_TGS109T3 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +9:31973112 9:32405485 HMGB3P23(327952)/RNA5SP281(320446)--ACO1 BS_TGS109T3 ARRIBA other 3 0 medium [],deletion HMGB3P23 RNA5SP281 ACO1 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_TGS109T3 ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +8:51499699 8:51833689 PXDNL--PCMTD1 BS_TGS109T3 ARRIBA in-frame 1 1 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.01Mb],LOCAL_REARRANGEMENT:-:[8130]],duplication PXDNL NA PCMTD1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_TGS109T3 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +19:38930470 19:19565089 SARS2--PBX4 BS_TGS109T3 ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr19:19.30Mb]],deletion SARS2 NA PBX4 NA NA TranscriptionFactor NA NA NA +5:9379823 5:9269031 SEMA5A--SEMA5A BS_TGS109T3 ARRIBA frameshift 9 0 medium [SELFIE,INTRACHROMOSOMAL[chr5:0.51Mb]],inversion/5'-5' SEMA5A NA SEMA5A NA NA NA NA NA NA +10:50433476 10:48664412 SGMS1--AC068898.1 BS_TGS109T3 ARRIBA other 13 0 high [INTRACHROMOSOMAL[chr10:1.63Mb]],deletion SGMS1 NA AC068898.1 NA TumorSuppressorGene, Oncogene NA NA NA NA +10:50433476 10:48664412 SGMS1--AC068898.1 BS_TGS109T3 STARFUSION other 15 0 NA [INTRACHROMOSOMAL[chr10:1.63Mb]] SGMS1 NA AC068898.1 NA TumorSuppressorGene, Oncogene NA NA NA NA +13:24017701 2:38075389 SPATA13--CYP1B1 BS_TGS109T3 ARRIBA other 2 0 high [INTERCHROMOSOMAL[chr13--chr2]],translocation SPATA13 NA CYP1B1 NA NA NA NA NA NA +4:55424643 4:45264076 TMEM165--AC108467.1(212424)/THAP12P9(59177) BS_TGS109T3 ARRIBA frameshift 11 1 high [],duplication TMEM165 NA AC108467.1 THAP12P9 NA NA NA NA NA +12:132986873 8:138310920 ZNF26--FAM135B BS_TGS109T3 ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr12--chr8]],translocation ZNF26 NA FAM135B NA TranscriptionFactor CosmicCensus NA NA NA +12:133048848 8:139269448 ZNF84--AC100807.1(141495)/AC087354.1(190614) BS_TGS109T3 ARRIBA frameshift 3 0 high [],translocation ZNF84 NA AC100807.1 AC087354.1 TranscriptionFactor NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_TGW6HC4X ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +5:88498673 5:88542070 AC091826.2--LINC00461 BS_TGW6HC4X ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +9:22127402 9:22046317 CDKN2B-AS1(6305)/AL157937.1(76588)--CDKN2B-AS1 BS_TGW6HC4X ARRIBA other 2 0 medium [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +21:40692810 21:40708771 DSCAM--DSCAM BS_TGW6HC4X ARRIBA in-frame 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA +5:152270360 5:151946639 LINC01933--GLRA1(21797)/LINC01933(2932) BS_TGW6HC4X ARRIBA other 2 0 medium [],duplication LINC01933 NA GLRA1 LINC01933 NA NA NA NA NA +2:191076227 2:191167960 STAT4--AC079777.1(11890)/HMGB1P27(6273) BS_TGW6HC4X ARRIBA frameshift 1 0 low [],duplication STAT4 NA AC079777.1 HMGB1P27 TranscriptionFactor NA NA NA NA +6:64590223 6:64593309 EYS--EYS BS_THSPSG2Z ARRIBA frameshift 7 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +7:18496324 7:21916894 HDAC9--CDCA7L BS_THSPSG2Z ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:2.90Mb]],inversion HDAC9 NA CDCA7L NA NA NA NA NA NA +16:47428804 16:48167366 ITFG1--ABCC11 BS_THSPSG2Z ARRIBA frameshift 27 1 high [INTRACHROMOSOMAL[chr16:0.70Mb]],duplication ITFG1 NA ABCC11 NA NA NA NA NA NA +16:47428804 16:48167660 ITFG1--ABCC11 BS_THSPSG2Z ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr16:0.70Mb]],duplication ITFG1 NA ABCC11 NA NA NA NA NA NA +16:47428804 16:48167366 ITFG1--ABCC11 BS_THSPSG2Z STARFUSION frameshift 28 1 NA [INTRACHROMOSOMAL[chr16:0.70Mb]] ITFG1 NA ABCC11 NA NA NA NA NA NA +16:47428804 16:48167366 ITFG1--AC096996.2 BS_THSPSG2Z STARFUSION other 17 1 NA [INTRACHROMOSOMAL[chr16:0.70Mb]] ITFG1 NA AC096996.2 NA NA NA NA NA NA +22:29604112 22:27227080 NF2--LINC01638(2353)/AL020994.3(49160) BS_THSPSG2Z ARRIBA frameshift 3 0 high [],inversion NF2 NA LINC01638 AL020994.3 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +7:39086031 7:38986246 POU6F2--POU6F2 BS_THSPSG2Z ARRIBA frameshift 8 1 medium [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +3:141945469 4:39924255 TFDP2--PDS5A BS_THSPSG2Z ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr3--chr4]],translocation TFDP2 NA PDS5A NA TranscriptionFactor NA NA NA NA +12:133182030 12:133144434 ZNF268--ZNF10 BS_THSPSG2Z ARRIBA frameshift 3 2 high [HGNC_GENEFAM,INTRACHROMOSOMAL[chr12:0.02Mb],LOCAL_REARRANGEMENT:+:[21944]],duplication ZNF268 NA ZNF10 NA TranscriptionFactor TranscriptionFactor NA NA NA +12:133182030 12:133139199 ZNF268--ZNF10 BS_THSPSG2Z ARRIBA frameshift 1 2 high [HGNC_GENEFAM,INTRACHROMOSOMAL[chr12:0.02Mb],LOCAL_REARRANGEMENT:+:[21944]],duplication ZNF268 NA ZNF10 NA TranscriptionFactor TranscriptionFactor NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_TJTEF70D ARRIBA other 2 1 low [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +6:80967234 17:40809271 AL590824.1(410045)/FAM46A(524205)--AC090283.1 BS_TJTEF70D ARRIBA other 6 0 medium [],translocation AL590824.1 FAM46A AC090283.1 NA NA NA NA NA NA +15:100905687 15:101666749 ALDH1A3--TARSL2 BS_TJTEF70D ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr15:0.74Mb]],deletion/5'-5' ALDH1A3 NA TARSL2 NA NA NA NA NA NA +15:100629732 8:56477901 ASB7--SEPT10P1 BS_TJTEF70D ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr15--chr8]],translocation ASB7 NA SEPT10P1 NA NA NA NA NA NA +2:227912469 15:64516838 DAW1--ZNF609 BS_TJTEF70D ARRIBA frameshift 25 4 high [INTERCHROMOSOMAL[chr2--chr15]],translocation DAW1 NA ZNF609 NA NA TranscriptionFactor NA NA NA +17:44906802 3:15738585 GFAP--RN7SL4P BS_TJTEF70D STARFUSION other 8 0 NA [INTERCHROMOSOMAL[chr17--chr3]] GFAP NA RN7SL4P NA NA NA NA NA NA +2:226914351 2:225729230 RHBDD1--AC016717.2(25576)/AC016717.3(32329) BS_TJTEF70D ARRIBA frameshift 3 1 high [],duplication RHBDD1 NA AC016717.2 AC016717.3 NA NA NA NA NA +2:226914351 8:55934657 RHBDD1--LYN BS_TJTEF70D ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr2--chr8]],translocation/5'-5' RHBDD1 NA LYN NA NA Kinase, Oncogene, Kinase NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_TJTEF70D ARRIBA other 13 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +15:101711880 4:6287093 TARSL2--WFS1 BS_TJTEF70D ARRIBA in-frame 45 8 high [INTERCHROMOSOMAL[chr15--chr4]],translocation TARSL2 NA WFS1 NA NA NA NA NA NA +15:101721126 4:6287093 TARSL2--WFS1 BS_TJTEF70D ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr15--chr4]],translocation TARSL2 NA WFS1 NA NA NA NA NA NA +15:101711880 4:6287093 TARSL2--WFS1 BS_TJTEF70D STARFUSION frameshift 46 8 NA [INTERCHROMOSOMAL[chr15--chr4]] TARSL2 NA WFS1 NA NA NA NA NA NA +16:18996579 2:227911826 TMC7--DAW1 BS_TJTEF70D ARRIBA other 7 8 medium [INTERCHROMOSOMAL[chr16--chr2]],translocation/3'-3' TMC7 NA DAW1 NA NA NA NA NA NA +17:40391506 16:18828168 TOP2A--SMG1 BS_TJTEF70D ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr17--chr16]],translocation TOP2A NA SMG1 NA Oncogene Kinase, Kinase NA NA NA +4:6270014 8:56171189 WFS1--PLAG1 BS_TJTEF70D ARRIBA other 115 36 high [INTERCHROMOSOMAL[chr4--chr8]],translocation WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +4:6270014 8:56179513 WFS1--PLAG1 BS_TJTEF70D ARRIBA other 28 38 high [INTERCHROMOSOMAL[chr4--chr8]],translocation WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +4:6270014 8:56171189 WFS1--PLAG1 BS_TJTEF70D STARFUSION other 115 38 NA [INTERCHROMOSOMAL[chr4--chr8]] WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +4:6270014 8:56179513 WFS1--PLAG1 BS_TJTEF70D STARFUSION other 28 38 NA [INTERCHROMOSOMAL[chr4--chr8]] WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_TK84K675 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_TK84K675 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_TK84K675 ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +15:72572165 18:2035147 ARIH1--AP005230.1 BS_TK84K675 ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr15--chr18]],translocation ARIH1 NA AP005230.1 NA NA NA NA NA NA +15:72572165 18:1906646 ARIH1--AP005230.1 BS_TK84K675 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr15--chr18]],translocation ARIH1 NA AP005230.1 NA NA NA NA NA NA +15:72572165 18:1886447 ARIH1--AP005230.1 BS_TK84K675 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr15--chr18]],translocation ARIH1 NA AP005230.1 NA NA NA NA NA NA +X:36205110 X:36179345 CFAP47--CFAP47 BS_TK84K675 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +2:124798320 2:124772799 CNTNAP5--CNTNAP5 BS_TK84K675 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.89Mb]],duplication/non-canonical_splicing CNTNAP5 NA CNTNAP5 NA NA NA NA NA NA +9:134738808 13:44436095 COL5A1--TSC22D1 BS_TK84K675 ARRIBA frameshift 2 2 medium [INTERCHROMOSOMAL[chr9--chr13]],translocation COL5A1 NA TSC22D1 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_TK84K675 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +21:32428684 3:75397829 EVA1C--AC139453.2(2293)/ALG1L6P(17241) BS_TK84K675 ARRIBA other 3 0 medium [],translocation EVA1C NA AC139453.2 ALG1L6P NA NA NA NA NA +1:150661814 6:84421242 GOLPH3L--LINC01611 BS_TK84K675 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr1--chr6]],translocation GOLPH3L NA LINC01611 NA NA NA NA NA NA +12:57303176 12:58003438 R3HDM2--AC084033.2(18677)/LINC02403(84454) BS_TK84K675 ARRIBA frameshift 32 11 high [],duplication R3HDM2 NA AC084033.2 LINC02403 NA NA NA NA NA +12:57303176 12:57935553 R3HDM2--AC084033.3 BS_TK84K675 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr12:0.50Mb]],duplication R3HDM2 NA AC084033.3 NA NA NA NA NA NA +12:57310264 12:57935553 R3HDM2--AC084033.3 BS_TK84K675 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr12:0.50Mb]],duplication R3HDM2 NA AC084033.3 NA NA NA NA NA NA +7:128343676 7:70118132 RBM28--AUTS2 BS_TK84K675 ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr7:57.50Mb]],inversion RBM28 NA AUTS2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_TK84K675 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:35183969 1:84673074 SFPQ--SSX2IP BS_TK84K675 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr1:49.45Mb]],inversion/5'-5' SFPQ NA SSX2IP NA CosmicCensus, Oncogene NA NA NA NA +7:26726882 7:26844137 SKAP2--SKAP2 BS_TK84K675 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.33Mb]],duplication/non-canonical_splicing SKAP2 NA SKAP2 NA NA NA NA NA NA +15:101711880 4:6287093 TARSL2--WFS1 BS_TK84K675 ARRIBA in-frame 58 9 high [INTERCHROMOSOMAL[chr15--chr4]],translocation TARSL2 NA WFS1 NA NA NA NA NA NA +15:101721126 4:6287093 TARSL2--WFS1 BS_TK84K675 ARRIBA frameshift 3 3 medium [INTERCHROMOSOMAL[chr15--chr4]],translocation TARSL2 NA WFS1 NA NA NA NA NA NA +15:101711880 4:6287093 TARSL2--WFS1 BS_TK84K675 STARFUSION frameshift 59 9 NA [INTERCHROMOSOMAL[chr15--chr4]] TARSL2 NA WFS1 NA NA NA NA NA NA +15:101710818 15:64562145 TARSL2--ZNF609 BS_TK84K675 ARRIBA other 12 1 medium [INTRACHROMOSOMAL[chr15:36.97Mb]],inversion TARSL2 NA ZNF609 NA NA TranscriptionFactor NA NA NA +4:6270014 8:56171189 WFS1--PLAG1 BS_TK84K675 ARRIBA other 78 6 high [INTERCHROMOSOMAL[chr4--chr8]],translocation WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +4:6270014 8:56179513 WFS1--PLAG1 BS_TK84K675 ARRIBA other 15 7 high [INTERCHROMOSOMAL[chr4--chr8]],translocation WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +4:6270014 8:56171189 WFS1--PLAG1 BS_TK84K675 STARFUSION other 78 7 NA [INTERCHROMOSOMAL[chr4--chr8]] WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +4:6270014 8:56179513 WFS1--PLAG1 BS_TK84K675 STARFUSION other 15 7 NA [INTERCHROMOSOMAL[chr4--chr8]] WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_TM9MH0RP ARRIBA other 80 1 high [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_TM9MH0RP ARRIBA other 80 1 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:100516756 7:100509355 AC069281.1--NYAP1(14556)/AC069281.1(362) BS_TM9MH0RP ARRIBA other 3 0 medium [],duplication AC069281.1 NA NYAP1 AC069281.1 NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_TM9MH0RP ARRIBA other 16 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +14:49586868 6:52995786 AL139099.5--7SK BS_TM9MH0RP STARFUSION other 4 9 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +5:73684884 5:71881515 ARHGEF28--AC143336.1(125214)/MAP1B(225719) BS_TM9MH0RP ARRIBA frameshift 7 0 high [],duplication ARHGEF28 NA AC143336.1 MAP1B NA NA NA NA NA +5:73684884 5:71977956 ARHGEF28--AC143336.1(221655)/MAP1B(129278) BS_TM9MH0RP ARRIBA frameshift 8 0 high [],duplication ARHGEF28 NA AC143336.1 MAP1B NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_TM9MH0RP ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +12:15631442 12:15651006 EPS8--EPS8 BS_TM9MH0RP ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.26Mb]],duplication/non-canonical_splicing EPS8 NA EPS8 NA Oncogene Oncogene NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_TM9MH0RP ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_TM9MH0RP ARRIBA other 6 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +4:163854021 4:164111662 MARCH1--MARCH1 BS_TM9MH0RP ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.86Mb]],duplication/non-canonical_splicing MARCH1 NA MARCH1 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_TM9MH0RP ARRIBA other 16 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +9:84752085 5:11346627 NTRK2--CTNND2 BS_TM9MH0RP ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr9--chr5]],translocation NTRK2 NA CTNND2 NA Oncogene, Kinase CosmicCensus, Oncogene NA NA NA +6:149864382 6:159736258 RAET1E-AS1--WTAP BS_TM9MH0RP ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr6:9.81Mb]],deletion RAET1E-AS1 NA WTAP NA NA NA NA NA NA +14:49586868 6:52995786 RN7SL1--7SK BS_TM9MH0RP STARFUSION other 4 9 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_TM9MH0RP ARRIBA other 80 1 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:121825366 19:48981636 SETD1B--GYS1 BS_TM9MH0RP ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr12--chr19]],translocation SETD1B NA GYS1 NA CosmicCensus NA NA NA NA +6:159692715 6:149900538 SOD2--RAET1E-AS1 BS_TM9MH0RP ARRIBA frameshift 42 4 medium [INTRACHROMOSOMAL[chr6:9.75Mb]],deletion/5'-5' SOD2 NA RAET1E-AS1 NA TumorSuppressorGene NA NA NA NA +5:99743695 9:33700132 AC008837.2(148398)/AC092284.1(204600)--AL356489.2 BS_TMTV769C ARRIBA other 2 0 medium [],translocation AC008837.2 AC092284.1 AL356489.2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_TMTV769C ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_TMTV769C ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_TMTV769C ARRIBA other 3 0 low [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_TMTV769C ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +7:43501322 7:43492075 HECW1--HECW1 BS_TMTV769C ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +3:178801793 3:178943850 KCNMB2-AS1--KCNMB2-AS1(83445)/ZMAT3(73373) BS_TMTV769C ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +X:150473802 X:150469745 MAMLD1--MAMLD1 BS_TMTV769C ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA +1:39692588 4:142725901 PPIE--INPP4B BS_TMTV769C ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr1--chr4]],translocation PPIE NA INPP4B NA NA TumorSuppressorGene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_TMTV769C ARRIBA other 21 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:52116275 8:52172583 ST18--ST18 BS_TMTV769C ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +X:75098942 X:75178783 ABCB7--ABCB7(22051)/BUD31P2(22708) BS_TNRHHYNC ARRIBA frameshift 2 1 high [],duplication ABCB7 NA ABCB7 BUD31P2 NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_TNRHHYNC ARRIBA other 15 2 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +3:167140689 3:167288983 AC092965.1(74369)/ZBBX(99598)--ZBBX BS_TNRHHYNC ARRIBA other 2 2 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +3:167140689 3:167288983 AC092965.1(74369)/ZBBX(99598)--ZBBX BS_TNRHHYNC ARRIBA other 2 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_TNRHHYNC STARFUSION other 27 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_TNRHHYNC ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_TNRHHYNC ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93557472 AC110023.1--AC091078.1 BS_TNRHHYNC ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93557472 AC110023.1--AC091078.1 BS_TNRHHYNC ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +18:79307234 18:79206937 ATP9B--ATP9B BS_TNRHHYNC ARRIBA in-frame 15 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +8:61376779 8:61299677 CLVS1--CLVS1 BS_TNRHHYNC ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.44Mb]],duplication/non-canonical_splicing CLVS1 NA CLVS1 NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_TNRHHYNC ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +18:5406777 18:5434121 EPB41L3--EPB41L3 BS_TNRHHYNC ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.24Mb]],duplication/non-canonical_splicing EPB41L3 NA EPB41L3 NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_TNRHHYNC ARRIBA other 4 1 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +10:77073097 10:77090510 KCNMA1--KCNMA1 BS_TNRHHYNC ARRIBA frameshift 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr10:0.77Mb]],duplication/non-canonical_splicing KCNMA1 NA KCNMA1 NA NA NA NA NA NA +18:6974903 18:6980637 LAMA1--LAMA1 BS_TNRHHYNC ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA +14:60019260 14:59997656 LRRC9--LRRC9 BS_TNRHHYNC ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_TNRHHYNC ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96920125 12:96860819 NEDD1--CFAP54 BS_TNRHHYNC ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:44607169 12:44714741 NELL2--NELL2 BS_TNRHHYNC ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_TNRHHYNC ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_TNRHHYNC ARRIBA frameshift 30 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +5:172373790 5:172535479 SH3PXD2B--SH3PXD2B(80956)/LINC01944(21913) BS_TNRHHYNC ARRIBA frameshift 3 0 high [],inversion SH3PXD2B NA SH3PXD2B LINC01944 NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_TNRHHYNC ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +4:121951552 11:35362302 TRPC3--SLC1A2 BS_TNRHHYNC ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr4--chr11]],translocation TRPC3 NA SLC1A2 NA NA NA NA NA NA +14:37701526 14:37680151 TTC6--TTC6 BS_TNRHHYNC ARRIBA frameshift 16 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_TNRHHYNC ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +X:54248697 X:54259338 WNK3--WNK3 BS_TNRHHYNC ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA +19:2867424 19:2389761 ZNF556--TMPRSS9 BS_TQ5QHR17 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr19:0.44Mb]],duplication ZNF556 NA TMPRSS9 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_TRKH2SPE ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_TRKH2SPE ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_TRKH2SPE ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_TRKH2SPE ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +1:6825210 1:40407482 CAMTA1--SMAP2 BS_TRKH2SPE ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:32.58Mb]],inversion/3'-3' CAMTA1 NA SMAP2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_TRKH2SPE ARRIBA other 56 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +11:118756260 11:74863021 DDX6--XRRA1 BS_TRKH2SPE ARRIBA in-frame 5 2 high [INTRACHROMOSOMAL[chr11:43.80Mb]],deletion DDX6 NA XRRA1 NA CosmicCensus, Oncogene NA NA NA NA +11:118756260 11:74852082 DDX6--XRRA1 BS_TRKH2SPE ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr11:43.80Mb]],deletion DDX6 NA XRRA1 NA CosmicCensus, Oncogene NA NA NA NA +12:50505240 12:3011004 DIP2B--TEAD4 BS_TRKH2SPE ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr12:47.46Mb]],duplication DIP2B NA TEAD4 NA NA TranscriptionFactor NA NA NA +1:65413723 1:66725742 DNAJC6--SGIP1 BS_TRKH2SPE ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:1.12Mb]],duplication DNAJC6 NA SGIP1 NA Oncogene NA NA NA NA +1:42227883 1:40738836 FOXJ3--NFYC BS_TRKH2SPE ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:1.40Mb]],inversion FOXJ3 NA NFYC NA TranscriptionFactor TranscriptionFactor NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_TRKH2SPE ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +20:34363491 17:63267748 ITCH--TANC2 BS_TRKH2SPE ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr20--chr17]],translocation ITCH NA TANC2 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_TRKH2SPE ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +10:77403862 3:197522781 KCNMA1--BDH1 BS_TRKH2SPE ARRIBA in-frame 4 0 high [INTERCHROMOSOMAL[chr10--chr3]],translocation KCNMA1 NA BDH1 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_TRKH2SPE ARRIBA other 3 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +11:68892890 11:70896567 MRPL21--SHANK2 BS_TRKH2SPE ARRIBA frameshift 2 0 medium [ChimerSeq,INTRACHROMOSOMAL[chr11:1.56Mb]],duplication MRPL21 NA SHANK2 NA NA NA NA NA TCGAFusion +13:108910150 13:108883059 MYO16--MYO16 BS_TRKH2SPE ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +1:198157276 1:177576950 NEK7--AL122019.1 BS_TRKH2SPE ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr1:20.56Mb]],inversion NEK7 NA AL122019.1 NA Kinase, Kinase NA NA NA NA +1:198157276 1:177393788 NEK7--AL122019.1 BS_TRKH2SPE ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr1:20.56Mb]],inversion NEK7 NA AL122019.1 NA Kinase, Kinase NA NA NA NA +1:198157276 1:177573784 NEK7--AL122019.1 BS_TRKH2SPE ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr1:20.56Mb]],inversion NEK7 NA AL122019.1 NA Kinase, Kinase NA NA NA NA +15:88126271 15:88137561 NTRK3--NTRK3 BS_TRKH2SPE ARRIBA frameshift 13 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.40Mb]],duplication/non-canonical_splicing NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +1:28369825 1:215970776 PHACTR4--USH2A BS_TRKH2SPE ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr1:187.12Mb]],inversion PHACTR4 NA USH2A NA TumorSuppressorGene NA NA NA NA +7:39086031 7:39041842 POU6F2--POU6F2 BS_TRKH2SPE ARRIBA frameshift 8 0 medium [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +15:24535806 15:24491466 PWRN1--PWRN3(43499)/PWRN1(1671) BS_TRKH2SPE ARRIBA other 3 0 medium [],duplication PWRN1 NA PWRN3 PWRN1 NA NA NA NA NA +11:73376499 11:69419991 RELT--AP005233.1(3159)/AP000439.3(5699) BS_TRKH2SPE ARRIBA other 2 0 medium [],inversion RELT NA AP005233.1 AP000439.3 NA NA NA NA NA +14:49862577 6:52995631 RN7SL2--7SK BS_TRKH2SPE STARFUSION other 14 24 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +1:228609260 1:212190041 RNA5SP162(50921)/RNA5S1(1008)--AL606468.1 BS_TRKH2SPE ARRIBA other 3 0 medium [],duplication RNA5SP162 RNA5S1 AL606468.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_TRKH2SPE ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:7367649 3:197539648 SFMBT2--BDH1 BS_TRKH2SPE ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr10--chr3]],translocation/5'-5' SFMBT2 NA BDH1 NA Oncogene NA NA NA NA +12:104958088 12:114074341 SLC41A2--RBM19(107970)/AC010183.1(2792) BS_TRKH2SPE ARRIBA other 3 0 high [],duplication SLC41A2 NA RBM19 AC010183.1 NA NA NA NA NA +17:63238077 20:34369394 TANC2--ITCH BS_TRKH2SPE ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr17--chr20]],translocation TANC2 NA ITCH NA NA NA NA NA NA +4:16323036 4:16256257 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_TRKH2SPE ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +7:66948694 7:138596530 TMEM248--SVOPL BS_TRKH2SPE ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:71.64Mb]],inversion TMEM248 NA SVOPL NA NA NA NA NA NA +1:151540426 1:24456138 TUFT1--NIPAL3 BS_TRKH2SPE ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr1:127.07Mb]],duplication TUFT1 NA NIPAL3 NA NA NA NA NA NA +11:11897693 11:15702183 USP47--AC087379.1 BS_TRKH2SPE ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr11:3.74Mb]],inversion USP47 NA AC087379.1 NA NA NA NA NA NA +3:167575918 3:167664448 WDR49--WDR49(10465)/PDCD10(18850) BS_TRKH2SPE ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +2:144517278 2:66665721 ZEB2--LINC01798 BS_TRKH2SPE ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr2:77.63Mb]],inversion ZEB2 NA LINC01798 NA Oncogene, TranscriptionFactor NA NA NA NA +2:144517278 2:66691672 ZEB2--LINC01798 BS_TRKH2SPE ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr2:77.63Mb]],inversion ZEB2 NA LINC01798 NA Oncogene, TranscriptionFactor NA NA NA NA +2:144517278 2:66675758 ZEB2--LINC01798 BS_TRKH2SPE ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr2:77.63Mb]],inversion ZEB2 NA LINC01798 NA Oncogene, TranscriptionFactor NA NA NA NA +3:48247677 X:152364596 ZNF589--GABRA3 BS_TRKH2SPE ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr3--chrX]],translocation ZNF589 NA GABRA3 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_TV5B86ZD ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_TV5B86ZD ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_TV5B86ZD ARRIBA other 8 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_TV5B86ZD ARRIBA in-frame 4 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_TV5B86ZD ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_TV5B86ZD ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_TV5B86ZD STARFUSION in-frame 4 2 NA [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]] CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_TV5B86ZD ARRIBA in-frame 4 1 high [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_TV5B86ZD ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100561397 CAVIN4--TMEFF1 BS_TV5B86ZD ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_TV5B86ZD STARFUSION in-frame 4 2 NA [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]] CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_TV5B86ZD ARRIBA frameshift 52 8 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +21:24441913 21:24303153 LINC01684--LINC01689 BS_TV5B86ZD ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr21:0.11Mb]],duplication/5'-5' LINC01684 NA LINC01689 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_TV5B86ZD ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_TV5B86ZD ARRIBA frameshift 3 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19759323 13:19835689 PSPC1--ZMYM5 BS_TV5B86ZD ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_TV5B86ZD ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +22:41301772 22:29957036 ZC3H7B--MTMR3 BS_TV5B86ZD ARRIBA other 12 1 high [INTRACHROMOSOMAL[chr22:11.27Mb]],duplication ZC3H7B NA MTMR3 NA NA Oncogene NA NA NA +22:41301772 22:29957036 ZC3H7B--MTMR3 BS_TV5B86ZD STARFUSION other 11 1 NA [INTRACHROMOSOMAL[chr22:11.27Mb]] ZC3H7B NA MTMR3 NA NA Oncogene NA NA NA +7:9189560 7:8612991 AC004852.2--NXPH1 BS_TW8DQH8J ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr7:0.33Mb]],deletion/5'-5' AC004852.2 NA NXPH1 NA NA NA NA NA NA +18:57642052 17:64145640 AC027097.1--ERN1(14821)/SNHG25(330) BS_TW8DQH8J ARRIBA other 1 2 high [],translocation AC027097.1 NA ERN1 SNHG25 NA Kinase NA NA NA +18:57642052 17:64145640 AC027097.2--ERN1(14821)/SNHG25(330) BS_TW8DQH8J ARRIBA other 1 2 high [],translocation AC027097.2 NA ERN1 SNHG25 NA Kinase NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_TW8DQH8J ARRIBA other 2 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +11:114481349 11:114445979 AP002373.2(27226)/NXPE2P1(31357)--REXO2 BS_TW8DQH8J ARRIBA other 3 0 high [],duplication AP002373.2 NXPE2P1 REXO2 NA NA NA NA NA NA +17:30857112 17:9525996 ATAD5--STX8 BS_TW8DQH8J ARRIBA frameshift 9 1 high [INTRACHROMOSOMAL[chr17:21.26Mb]],duplication/5'-5' ATAD5 NA STX8 NA NA NA NA NA NA +18:54359517 18:59106342 C18orf54--AC040963.1(21361)/SEC11C(33135) BS_TW8DQH8J ARRIBA other 1 1 medium [],deletion C18orf54 NA AC040963.1 SEC11C NA NA NA NA NA +17:64129976 18:57706587 ERN1--ATP8B1 BS_TW8DQH8J ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr17--chr18]],translocation ERN1 NA ATP8B1 NA Kinase Oncogene NA NA NA +6:114469299 6:114371592 HDAC2-AS2--HDAC2-AS2 BS_TW8DQH8J ARRIBA other 19 4 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA +6:22574355 6:22349229 HDGFL1(2689)/AL033539.1(14782)--CASC15 BS_TW8DQH8J ARRIBA other 3 0 medium [],duplication HDGFL1 AL033539.1 CASC15 NA NA NA NA NA NA +2:186039500 2:186086370 LINC01473--LINC01473(3137)/AC104058.1(76579) BS_TW8DQH8J ARRIBA other 1 0 low [],duplication LINC01473 NA LINC01473 AC104058.1 NA NA NA NA NA +3:136194972 3:135558103 MSL2--AC128689.1(118215)/AC092989.1(367788) BS_TW8DQH8J ARRIBA frameshift 2 1 high [],deletion MSL2 NA AC128689.1 AC092989.1 NA NA NA NA NA +17:9545172 17:30831352 STX8--AC127024.1 BS_TW8DQH8J ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr17:21.25Mb]],duplication/5'-5' STX8 NA AC127024.1 NA NA NA NA NA NA +17:9545172 17:30804108 STX8--CRLF3 BS_TW8DQH8J ARRIBA frameshift 10 4 high [INTRACHROMOSOMAL[chr17:21.19Mb]],duplication STX8 NA CRLF3 NA NA NA NA NA NA +17:9545172 17:30797398 STX8--CRLF3 BS_TW8DQH8J ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr17:21.19Mb]],duplication STX8 NA CRLF3 NA NA NA NA NA NA +X:54307922 X:54333792 WNK3--WNK3 BS_TW8DQH8J ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_TXY8QYWA ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_TXY8QYWA ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_TXY8QYWA ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +20:24584993 20:5173523 SYNDIG1--CDS2 BS_TXY8QYWA ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr20:19.27Mb]],duplication SYNDIG1 NA CDS2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_TXZ7KHTQ ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_TXZ7KHTQ ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +18:80135827 10:93056924 ADNP2--EXOC6 BS_TXZ7KHTQ ARRIBA in-frame 1 1 high [INTERCHROMOSOMAL[chr18--chr10]],translocation ADNP2 NA EXOC6 NA TranscriptionFactor NA NA NA NA +13:31229294 1:248796327 B3GLCT--AL672296.1(22535)/SH3BP5L(14119) BS_TXZ7KHTQ ARRIBA frameshift 2 0 medium [],translocation B3GLCT NA AL672296.1 SH3BP5L NA NA NA NA NA +13:45486575 13:65482625 COG3--STARP1(171672)/HNRNPA3P5(305307) BS_TXZ7KHTQ ARRIBA frameshift 1 1 high [],inversion COG3 NA STARP1 HNRNPA3P5 NA NA NA NA NA +13:31946181 2:28173 EEF1DP3--FAM110C(10641) BS_TXZ7KHTQ ARRIBA other 26 2 high [],translocation EEF1DP3 NA FAM110C NA NA NA NA NA NA +13:31946181 2:81451 EEF1DP3--FAM110C(34581)/AC079779.1(116118) BS_TXZ7KHTQ ARRIBA other 4 0 high [],translocation EEF1DP3 NA FAM110C AC079779.1 NA NA NA NA NA +9:31973112 9:32405485 HMGB3P23(327952)/RNA5SP281(320446)--ACO1 BS_TXZ7KHTQ ARRIBA other 3 0 high [],deletion HMGB3P23 RNA5SP281 ACO1 NA NA NA NA NA NA +4:54731998 4:54549551 KIT--AC098868.1(102828)/LINC02260(53660) BS_TXZ7KHTQ ARRIBA frameshift 2 1 high [],duplication KIT NA AC098868.1 LINC02260 Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +8:89418044 8:89725641 KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_TXZ7KHTQ ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +4:54358397 4:54836416 LINC02283(2443)/AC098587.1(17605)--AC097494.1 BS_TXZ7KHTQ ARRIBA other 5 0 high [],inversion LINC02283 AC098587.1 AC097494.1 NA NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_TXZ7KHTQ ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +13:67225405 13:45369959 PCDH9--TPT1-AS1 BS_TXZ7KHTQ ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr13:20.91Mb]],inversion PCDH9 NA TPT1-AS1 NA TumorSuppressorGene NA NA NA NA +13:67225405 13:45377061 PCDH9--TPT1-AS1 BS_TXZ7KHTQ ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr13:20.91Mb]],inversion PCDH9 NA TPT1-AS1 NA TumorSuppressorGene NA NA NA NA +7:128333290 5:167859052 RBM28--TENM2 BS_TXZ7KHTQ ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr7--chr5]],translocation/5'-5' RBM28 NA TENM2 NA NA NA NA NA NA +19:1021629 8:33513484 RNU6-2--SNORD13 BS_TXZ7KHTQ STARFUSION other 17 0 NA [INTERCHROMOSOMAL[chr19--chr8]] RNU6-2 NA SNORD13 NA NA NA NA NA NA +X:141118028 3:186787310 RNU6-3P--EIF4A2 BS_TXZ7KHTQ STARFUSION other 9 0 NA [INTERCHROMOSOMAL[chrX--chr3]] RNU6-3P NA EIF4A2 NA NA CosmicCensus, Oncogene NA NA NA +X:141118027 17:38852911 RNU6-3P--RPL23 BS_TXZ7KHTQ STARFUSION other 7 0 NA [FA_CancerSupp,INTERCHROMOSOMAL[chrX--chr17]] RNU6-3P NA RPL23 NA NA NA NA NA NA +X:141118027 17:38852911 RNU6-3P--SNORA21 BS_TXZ7KHTQ STARFUSION other 7 0 NA [INTERCHROMOSOMAL[chrX--chr17]] RNU6-3P NA SNORA21 NA NA NA NA NA NA +19:893593 11:62665431 RNU6-9--METTL12 BS_TXZ7KHTQ STARFUSION other 7 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893590 12:6581597 RNU6-9--SCARNA11 BS_TXZ7KHTQ STARFUSION other 7 0 NA [INTERCHROMOSOMAL[chr19--chr12]] RNU6-9 NA SCARNA11 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--SNORA57 BS_TXZ7KHTQ STARFUSION other 7 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_TXZ7KHTQ ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +13:52692061 13:57243881 SUGT1--MTCO2P3(39082)/SLC25A5P4(70858) BS_TXZ7KHTQ ARRIBA other 18 0 medium [],deletion SUGT1 NA MTCO2P3 SLC25A5P4 NA NA NA NA NA +10:42550557 10:44283288 ZNF37BP--AL137026.1 BS_TXZ7KHTQ ARRIBA other 13 1 high [INTRACHROMOSOMAL[chr10:1.73Mb]],duplication ZNF37BP NA AL137026.1 NA NA NA NA NA NA +10:42550557 10:44283288 ZNF37BP--AL137026.1 BS_TXZ7KHTQ STARFUSION other 13 2 NA [INTRACHROMOSOMAL[chr10:1.73Mb]] ZNF37BP NA AL137026.1 NA NA NA NA NA NA +10:42550557 10:44293761 ZNF37BP--C10orf142 BS_TXZ7KHTQ ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr10:1.74Mb]],duplication/5'-5' ZNF37BP NA C10orf142 NA NA NA NA NA NA +10:42550557 10:44295020 ZNF37BP--C10orf142(371)/CXCL12(75145) BS_TXZ7KHTQ ARRIBA other 6 11 high [],duplication ZNF37BP NA C10orf142 CXCL12 NA NA NA TumorSuppressorGene NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_TYAYZ9ZW ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_TYAYZ9ZW ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_TYAYZ9ZW ARRIBA other 1 0 low [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +10:97157818 10:97164890 ARHGAP19-SLIT1--ARHGAP19-SLIT1 BS_TYAYZ9ZW ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.14Mb]],duplication/non-canonical_splicing ARHGAP19-SLIT1 NA ARHGAP19-SLIT1 NA NA NA NA NA NA +8:38413918 4:88385499 FGFR1--HERC6 BS_TYAYZ9ZW ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr8--chr4]],translocation FGFR1 NA HERC6 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_TYAYZ9ZW ARRIBA frameshift 9 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_TYAYZ9ZW ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_TYAYZ9ZW ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +18:25195160 22:25952375 ZNF521--MYO18B BS_TYAYZ9ZW ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr18--chr22]],translocation/5'-5' ZNF521 NA MYO18B NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene NA NA NA +15:79889093 15:79907684 MTHFS--ST20 BS_TYKJ8G2G ARRIBA in-frame 2 0 low [GTEx,INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_REARRANGEMENT:-:[1461]],duplication MTHFS NA ST20 NA NA TumorSuppressorGene NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_TYKJ8G2G ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +1:48055196 1:48011530 AL356289.1--TRABD2B(14635)/AL356289.1(39129) BS_TZ5D0A7R ARRIBA other 3 0 medium [],duplication AL356289.1 NA TRABD2B AL356289.1 NA NA NA NA NA +14:105155562 15:51809529 AL512356.1--TMOD2 BS_TZ5D0A7R ARRIBA other 68 11 high [INTERCHROMOSOMAL[chr14--chr15]],translocation/5'-5' AL512356.1 NA TMOD2 NA NA NA NA NA NA +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_TZ5D0A7R ARRIBA frameshift 3 1 medium [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +11:63763616 8:70138332 C11orf95--NCOA2 BS_TZ5D0A7R ARRIBA frameshift 34 16 high [INTERCHROMOSOMAL[chr11--chr8]],translocation C11orf95 NA NCOA2 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +11:63763616 8:70138332 C11orf95--NCOA2 BS_TZ5D0A7R STARFUSION in-frame 34 29 NA [INTERCHROMOSOMAL[chr11--chr8]] C11orf95 NA NCOA2 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_TZ5D0A7R ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +14:105155562 15:51809529 JAG2--TMOD2 BS_TZ5D0A7R ARRIBA frameshift 68 11 high [INTERCHROMOSOMAL[chr14--chr15]],translocation/5'-5' JAG2 NA TMOD2 NA Oncogene NA NA NA NA +1:219218712 1:219210515 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_TZ5D0A7R ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +8:70141184 14:105152291 NCOA2--JAG2 BS_TZ5D0A7R ARRIBA frameshift 10 1 high [INTERCHROMOSOMAL[chr8--chr14]],translocation NCOA2 NA JAG2 NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene NA NA NA +10:94171496 10:93999624 PLCE1--PIPSL(38084)/PLCE1(31188) BS_TZ5D0A7R ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +12:103965852 12:125316602 TDG--TMEM132B BS_TZ5D0A7R ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +7:82060428 8:128386011 CACNA2D1--RN7SKP226(165208)/LINC00824(19258) BS_TZVFR600 ARRIBA frameshift 7 0 medium [],translocation CACNA2D1 NA RN7SKP226 LINC00824 NA NA NA NA NA +3:41227352 16:72540611 CTNNB1--LINC01572 BS_TZVFR600 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr3--chr16]],translocation CTNNB1 NA LINC01572 NA CosmicCensus, Oncogene NA NA NA NA +3:41227352 16:72523415 CTNNB1--LINC01572 BS_TZVFR600 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr3--chr16]],translocation CTNNB1 NA LINC01572 NA CosmicCensus, Oncogene NA NA NA NA +8:116726016 8:128096518 EIF3H--PVT1 BS_TZVFR600 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:11.03Mb]],inversion EIF3H NA PVT1 NA NA Oncogene NA NA NA +3:127014831 3:126980571 PLXNA1--AC011199.1(4145)/PLXNA1(8023) BS_TZVFR600 ARRIBA frameshift 4 0 high [],duplication PLXNA1 NA AC011199.1 PLXNA1 NA NA NA NA NA +8:127794734 20:14580438 PVT1_1--MACROD2 BS_TZVFR600 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr8--chr20]],translocation/5'-5' PVT1_1 NA MACROD2 NA NA NA NA NA NA +8:127794734 20:14580438 PVT1_1--MACROD2-IT1 BS_TZVFR600 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr8--chr20]],translocation/5'-5' PVT1_1 NA MACROD2-IT1 NA NA NA NA NA NA +8:127794734 8:116848888 PVT1_1--UTP23 BS_TZVFR600 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr8:10.95Mb]],duplication PVT1_1 NA UTP23 NA NA NA NA NA NA +8:127794734 8:116658980 PVT1--EIF3H BS_TZVFR600 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:11.03Mb]],inversion PVT1 NA EIF3H NA Oncogene NA NA NA NA +8:127890998 8:116658980 PVT1--EIF3H BS_TZVFR600 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:11.03Mb]],inversion PVT1 NA EIF3H NA Oncogene NA NA NA NA +8:127855319 20:14643229 PVT1--MACROD2 BS_TZVFR600 ARRIBA other 17 2 medium [INTERCHROMOSOMAL[chr8--chr20]],translocation/5'-5' PVT1 NA MACROD2 NA Oncogene NA NA NA NA +8:127855319 20:14580438 PVT1--MACROD2-IT1 BS_TZVFR600 ARRIBA other 14 1 medium [INTERCHROMOSOMAL[chr8--chr20]],translocation/5'-5' PVT1 NA MACROD2-IT1 NA Oncogene NA NA NA NA +8:127794734 8:116848888 PVT1--UTP23 BS_TZVFR600 ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr8:10.95Mb]],duplication PVT1 NA UTP23 NA Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_V0Q1G94N ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_V0Q1G94N ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_V0Q1G94N ARRIBA in-frame 2 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_V0Q1G94N ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_V3REENH9 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_V3REENH9 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:138867975 7:140781693 KIAA1549--BRAF BS_V3REENH9 ARRIBA in-frame 3 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_V3REENH9 ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_V3Z3DB4N ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_V3Z3DB4N ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_V3Z3DB4N ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +9:35790340 9:31973015 AL133410.1--HMGB3P23(327855)/RNA5SP281(320543) BS_V3Z3DB4N ARRIBA other 4 0 medium [],duplication AL133410.1 NA HMGB3P23 RNA5SP281 NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_V3Z3DB4N ARRIBA frameshift 9 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:135850137 9:137354377 CAMSAP1--EXD3 BS_V3Z3DB4N ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr9:1.40Mb]],duplication CAMSAP1 NA EXD3 NA NA NA NA NA NA +9:135850137 9:137354773 CAMSAP1--EXD3 BS_V3Z3DB4N ARRIBA in-frame 5 1 high [INTRACHROMOSOMAL[chr9:1.40Mb]],duplication CAMSAP1 NA EXD3 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_V3Z3DB4N ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_V3Z3DB4N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +7:90917724 7:130782820 CDK14--KLF14(48759)/AC016831.6(7388) BS_V3Z3DB4N ARRIBA frameshift 12 1 medium [],deletion CDK14 NA KLF14 AC016831.6 Kinase TranscriptionFactor NA NA NA +7:91045960 7:131429033 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA in-frame 39 18 high [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90747775 7:131429033 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA frameshift 25 13 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90726812 7:131429033 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA frameshift 29 8 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90790652 7:131429033 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA in-frame 19 16 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90747775 7:131387120 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA frameshift 3 13 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90726812 7:131411306 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA frameshift 3 8 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90726812 7:131387120 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA in-frame 1 8 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90726812 7:131375424 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA frameshift 1 8 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90726812 7:131399241 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA in-frame 1 8 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90726812 7:131437785 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:91045960 7:131437785 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90917724 7:131443481 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90747775 7:131437785 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:91045960 7:131443481 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90863269 7:131437785 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90790652 7:131445774 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90917724 7:131445774 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90666411 7:131429033 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90790652 7:131466276 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:91045960 7:131463217 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90790652 7:131463217 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90863269 7:131463217 CDK14--MKLN1 BS_V3Z3DB4N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],deletion CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:91045960 7:131429033 CDK14--MKLN1 BS_V3Z3DB4N STARFUSION in-frame 39 25 NA [INTRACHROMOSOMAL[chr7:39.90Mb]] CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90726812 7:131429033 CDK14--MKLN1 BS_V3Z3DB4N STARFUSION frameshift 29 25 NA [INTRACHROMOSOMAL[chr7:39.90Mb]] CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90747775 7:131429033 CDK14--MKLN1 BS_V3Z3DB4N STARFUSION frameshift 28 25 NA [INTRACHROMOSOMAL[chr7:39.90Mb]] CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90790652 7:131429033 CDK14--MKLN1 BS_V3Z3DB4N STARFUSION in-frame 18 25 NA [INTRACHROMOSOMAL[chr7:39.90Mb]] CDK14 NA MKLN1 NA Kinase NA NA NA NA +7:90917724 7:54647643 CDK14--RNU6-1125P(26512)/RPL31P35(8715) BS_V3Z3DB4N ARRIBA frameshift 41 5 high [],duplication CDK14 NA RNU6-1125P RPL31P35 Kinase NA NA NA NA +7:90922457 7:90082958 CDK14--STEAP2-AS1 BS_V3Z3DB4N ARRIBA other 105 39 high [INTRACHROMOSOMAL[chr7:0.25Mb]],duplication/5'-5' CDK14 NA STEAP2-AS1 NA Kinase NA NA NA NA +7:90917724 7:88333857 CDK14--STEAP4(26966)/EIF4A1P13(114931) BS_V3Z3DB4N ARRIBA frameshift 5 0 medium [],duplication CDK14 NA STEAP4 EIF4A1P13 Kinase NA NA NA NA +9:22127563 9:22046751 CDKN2B-AS1(6466)/AL157937.1(76427)--CDKN2B-AS1 BS_V3Z3DB4N ARRIBA other 1 0 low [],duplication CDKN2B-AS1 AL157937.1 CDKN2B-AS1 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_V3Z3DB4N ARRIBA in-frame 21 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +4:172348689 4:172229656 GALNTL6--GALNTL6 BS_V3Z3DB4N ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.23Mb]],duplication/non-canonical_splicing GALNTL6 NA GALNTL6 NA NA NA NA NA NA +4:184474379 4:184894140 IRF2--LINC01093 BS_V3Z3DB4N ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr4:0.42Mb]],duplication IRF2 NA LINC01093 NA TranscriptionFactor NA NA NA NA +1:219218712 1:219210532 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_V3Z3DB4N ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +7:131466415 7:91045897 MKLN1--CDK14 BS_V3Z3DB4N ARRIBA frameshift 298 4 high [INTRACHROMOSOMAL[chr7:39.90Mb]],duplication MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion +7:131414710 7:90726567 MKLN1--CDK14 BS_V3Z3DB4N ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:39.90Mb]],duplication MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion +7:131399433 7:90863175 MKLN1--CDK14 BS_V3Z3DB4N ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],duplication MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion +7:131327997 7:90726567 MKLN1--CDK14 BS_V3Z3DB4N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],duplication MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion +7:131414710 7:91045897 MKLN1--CDK14 BS_V3Z3DB4N ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:39.90Mb]],duplication MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion +7:131466415 7:91045897 MKLN1--CDK14 BS_V3Z3DB4N STARFUSION frameshift 321 69 NA [INTRACHROMOSOMAL[chr7:39.90Mb]] MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_V3Z3DB4N ARRIBA other 5 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +4:185535342 4:187251688 PDLIM3--LINC02374(42342)/AC097652.1(52395) BS_V3Z3DB4N ARRIBA frameshift 5 0 medium [],inversion PDLIM3 NA LINC02374 AC097652.1 NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_V3Z3DB4N ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_V3Z3DB4N ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +9:4928312 9:4860125 RCL1(42395)/HNRNPA1P41(16358)--RCL1 BS_V3Z3DB4N ARRIBA other 3 0 medium [],duplication RCL1 HNRNPA1P41 RCL1 NA NA NA NA NA NA +X:74614422 X:55608203 RLIM--AL627224.1(8097)/FOXR2(15197) BS_V3Z3DB4N ARRIBA other 3 0 high [],inversion RLIM NA AL627224.1 FOXR2 NA NA NA TranscriptionFactor, Oncogene NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_V3Z3DB4N ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:77820528 11:79215909 RSF1--TENM4 BS_V3Z3DB4N ARRIBA frameshift 4 0 high [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr11:0.83Mb]],duplication RSF1 NA TENM4 NA Oncogene NA NA NA NA +9:37995227 9:38240953 SHB--U8(93392)/AL135785.1(119474) BS_V3Z3DB4N ARRIBA other 2 1 medium [],duplication SHB NA U8 AL135785.1 NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_V3Z3DB4N ARRIBA frameshift 3 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +7:105125782 7:104643242 SRPK2--LHFPL3 BS_V3Z3DB4N ARRIBA frameshift 2 4 high [INTRACHROMOSOMAL[chr7:0.20Mb]],deletion/5'-5' SRPK2 NA LHFPL3 NA Kinase, Oncogene, Kinase NA NA NA NA +7:129937615 7:133024627 UBE2H--CHCHD3 BS_V3Z3DB4N ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:2.83Mb]],duplication UBE2H NA CHCHD3 NA NA TranscriptionFactor NA NA NA +3:184966713 3:178483117 VPS8--AC117457.1 BS_V3Z3DB4N ARRIBA frameshift 3 2 high [],duplication VPS8 NA AC117457.1 NA NA NA NA NA NA +3:184966713 3:178483117 VPS8--KCNMB2 BS_V3Z3DB4N ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr3:5.97Mb]],duplication VPS8 NA KCNMB2 NA NA NA NA NA NA +19:52405952 19:51717778 ZNF528--HAS1 BS_V3Z3DB4N ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr19:0.67Mb]],duplication/5'-5' ZNF528 NA HAS1 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_V4W81SFC ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_V4W81SFC ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:40008195 17:63754518 EIF2AK4--CCDC47 BS_V4W81SFC ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr15--chr17]],translocation EIF2AK4 NA CCDC47 NA Kinase NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_V4W81SFC STARFUSION other 16 26 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +4:94576034 4:94417419 PDLIM5--AC109925.1(47256)/PDLIM5(34438) BS_V4W81SFC ARRIBA frameshift 1 2 medium [],duplication PDLIM5 NA AC109925.1 PDLIM5 NA NA NA NA NA +4:94576034 4:94342944 PDLIM5--HPGDS(68)/AC109925.1(26889) BS_V4W81SFC ARRIBA frameshift 4 1 medium [],duplication PDLIM5 NA HPGDS AC109925.1 NA NA NA NA NA +9:35657837 14:49586591 RMRP--AL139099.5 BS_V4W81SFC STARFUSION other 8 10 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL139099.5 NA Oncogene NA NA NA NA +9:35657837 14:49586591 RMRP--RN7SL1 BS_V4W81SFC STARFUSION other 8 10 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL1 NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_V4W81SFC ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_V4W81SFC ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +11:102206074 X:150469745 YAP1--MAMLD1 BS_V4W81SFC ARRIBA in-frame 32 5 high [INTERCHROMOSOMAL[chr11--chrX]],translocation YAP1 NA MAMLD1 NA TumorSuppressorGene, Oncogene NA NA NA NA +11:102209564 X:150469745 YAP1--MAMLD1 BS_V4W81SFC ARRIBA in-frame 12 5 high [INTERCHROMOSOMAL[chr11--chrX]],translocation YAP1 NA MAMLD1 NA TumorSuppressorGene, Oncogene NA NA NA NA +11:102206086 X:150469745 YAP1--MAMLD1 BS_V4W81SFC ARRIBA in-frame 8 5 high [INTERCHROMOSOMAL[chr11--chrX]],translocation YAP1 NA MAMLD1 NA TumorSuppressorGene, Oncogene NA NA NA NA +11:102206074 X:150469745 YAP1--MAMLD1 BS_V4W81SFC STARFUSION in-frame 32 6 NA [INTERCHROMOSOMAL[chr11--chrX]] YAP1 NA MAMLD1 NA TumorSuppressorGene, Oncogene NA NA NA NA +11:102209564 X:150469745 YAP1--MAMLD1 BS_V4W81SFC STARFUSION in-frame 10 6 NA [INTERCHROMOSOMAL[chr11--chrX]] YAP1 NA MAMLD1 NA TumorSuppressorGene, Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_V72GX2AZ ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_V72GX2AZ ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_V72GX2AZ STARFUSION other 10 7 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_V72GX2AZ ARRIBA in-frame 5 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_V72GX2AZ ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:113395750 3:113494142 CFAP44--SPICE1 BS_V72H4RQS ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr3:0.00Mb],LOCAL_REARRANGEMENT:-:[1108]],duplication CFAP44 NA SPICE1 NA NA NA NA NA NA +11:112961664 11:115240420 NCAM1--CADM1 BS_V72H4RQS ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.89Mb]],inversion NCAM1 NA CADM1 NA NA TumorSuppressorGene NA NA NA +1:114947320 1:114923449 SYCP1--SYCP1 BS_V72H4RQS ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +4:103656194 4:103658403 TACR3--TACR3 BS_V72H4RQS ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_V7BJM89K ARRIBA other 121 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_V7BJM89K ARRIBA other 121 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:20343078 14:49862667 AL355075.4--RN7SL2 BS_V7BJM89K STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] AL355075.4 NA RN7SL2 NA NA NA NA NA NA +6:143501932 6:167000089 FUCA2--FGFR1OP BS_V7BJM89K ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr6:23.49Mb]],duplication/5'-5' FUCA2 NA FGFR1OP NA NA CosmicCensus, Oncogene NA NA NA +4:118143684 4:118053756 NDST3--NDST3 BS_V7BJM89K ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing NDST3 NA NDST3 NA NA NA NA NA NA +14:20343073 14:49862666 RPPH1--RN7SL2 BS_V7BJM89K STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RPPH1 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_V7BJM89K ARRIBA other 121 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:134713200 2:134869041 TMEM163--CCNT2-AS1 BS_V7BJM89K ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16464]],duplication TMEM163 NA CCNT2-AS1 NA NA NA NA NA NA +1:175528269 1:176085890 TNR--RFWD2 BS_V7BJM89K ARRIBA other 1 1 low [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.20Mb]],duplication TNR NA RFWD2 NA Oncogene TumorSuppressorGene NA NA TCGAFusion +16:29082041 4:113174416 AC009093.3--ANK2 BS_V89HGTET ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_V89HGTET ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:48946405 2:48807660 AC009975.1--ELOBP3(26765)/AC009975.1(1680) BS_V89HGTET ARRIBA other 2 0 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_V89HGTET ARRIBA other 6 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +7:138861139 7:140781693 KIAA1549--BRAF BS_V89HGTET ARRIBA in-frame 6 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +10:94032252 10:94005450 PLCE1--PIPSL(43910)/PLCE1(25362) BS_V89HGTET ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_V89HGTET ARRIBA other 39 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_V96WVE3Z ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_V96WVE3Z ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_V96WVE3Z ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_V96WVE3Z ARRIBA other 3 1 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_V96WVE3Z ARRIBA other 2 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_V96WVE3Z ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +2:151841903 2:151855375 CACNB4--CACNB4 BS_V96WVE3Z ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.27Mb]],duplication/non-canonical_splicing CACNB4 NA CACNB4 NA NA NA NA NA NA +9:100649183 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_V96WVE3Z ARRIBA other 1 2 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100649183 9:100576516 CAVIN4--TMEFF1 BS_V96WVE3Z ARRIBA other 1 2 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +18:65824831 18:65809704 CDH7--CDH7 BS_V96WVE3Z ARRIBA in-frame 19 3 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA +9:23762006 9:23765099 ELAVL2--ELAVL2 BS_V96WVE3Z ARRIBA frameshift 77 2 medium [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_V96WVE3Z ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_V96WVE3Z ARRIBA frameshift 6 0 medium [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +4:32158081 4:32146053 LINC02506(2675)/LINC02353(192957)--LINC02506 BS_V96WVE3Z ARRIBA other 7 1 low [],duplication LINC02506 LINC02353 LINC02506 NA NA NA NA NA NA +10:48306821 10:117183134 MAPK8--MIR3663HG(14075)/RPL12P26(13034) BS_V96WVE3Z ARRIBA other 30 0 high [],deletion MAPK8 NA MIR3663HG RPL12P26 Oncogene, Kinase NA NA NA NA +X:14873758 X:11013747 MOSPD2--AC073529.1 BS_V96WVE3Z ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chrX:3.76Mb]],duplication/5'-5' MOSPD2 NA AC073529.1 NA NA NA NA NA NA +7:39086031 7:38986246 POU6F2--POU6F2 BS_V96WVE3Z ARRIBA frameshift 19 3 high [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +9:9938507 9:8280912 PTPRD--AL135923.2(319832)/PTPRD(33334) BS_V96WVE3Z ARRIBA other 2 0 medium [],deletion PTPRD NA AL135923.2 PTPRD TumorSuppressorGene, CosmicCensus, Oncogene NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA +2:226942578 2:226807486 RHBDD1--AC010735.2 BS_V96WVE3Z ARRIBA frameshift 2 2 high [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:+:[24552]],duplication RHBDD1 NA AC010735.2 NA NA NA NA NA NA +2:226867318 2:226807486 RHBDD1--AC010735.2 BS_V96WVE3Z ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:+:[24552]],duplication RHBDD1 NA AC010735.2 NA NA NA NA NA NA +2:226914351 2:226807486 RHBDD1--AC010735.2 BS_V96WVE3Z STARFUSION other 21 2 NA [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:+:[24552]] RHBDD1 NA AC010735.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_V96WVE3Z ARRIBA other 40 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_V96WVE3Z ARRIBA other 46 2 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_V96WVE3Z ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_V9HVBBDW ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_V9HVBBDW ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_V9HVBBDW ARRIBA frameshift 55 6 high [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_V9HVBBDW ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +6:150877826 6:150830582 MTHFD1L--PLEKHG1 BS_V9HVBBDW ARRIBA in-frame 4 0 medium [ChimerSeq,INTRACHROMOSOMAL[chr6:0.02Mb],LOCAL_REARRANGEMENT:+:[21884]],duplication MTHFD1L NA PLEKHG1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_V9HVBBDW ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:21360677 14:21324618 SUPT16H--RPGRIP1 BS_V9HVBBDW ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.00Mb],LOCAL_INVERSION:-:+:[171]],duplication/3'-3' SUPT16H NA RPGRIP1 NA NA NA NA NA NA +1:216321883 1:216327654 USH2A--USH2A BS_V9HVBBDW ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +7:88742077 7:88681439 AC002127.2--EEF1A1P28(41023)/AC002127.2(29192) BS_VA5T4KAA ARRIBA other 4 1 high [],duplication AC002127.2 NA EEF1A1P28 AC002127.2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VA5T4KAA ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VA5T4KAA ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +12:85424204 12:85342472 AC131532.1(81292)/AC126471.1(143674)--AC131532.1 BS_VA5T4KAA ARRIBA other 2 1 high [],duplication AC131532.1 AC126471.1 AC131532.1 NA NA NA NA NA NA +1:168379782 1:168367491 AL022100.1(2906)/AL023755.1(21047)--AL022100.1 BS_VA5T4KAA ARRIBA other 2 1 medium [],duplication AL022100.1 AL023755.1 AL022100.1 NA NA NA NA NA NA +14:30412171 14:30472503 AL079305.1(39056)/G2E3-AS1(25821)--G2E3-AS1 BS_VA5T4KAA ARRIBA other 3 0 high [],duplication AL079305.1 G2E3-AS1 G2E3-AS1 NA NA NA NA NA NA +14:20343160 14:49586587 AL355075.4--AL139099.5 BS_VA5T4KAA STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA AL139099.5 NA NA NA NA NA NA +14:20343160 14:49586587 AL355075.4--RN7SL1 BS_VA5T4KAA STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA RN7SL1 NA NA NA NA NA NA +2:201307519 2:201364176 ALS2CR12--ALS2CR12(6778)/TRAK2(13031) BS_VA5T4KAA ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA +22:16669462 22:16679493 ANKRD62P1-PARP4P3--AC005301.1 BS_VA5T4KAA ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:-:[476]],duplication ANKRD62P1-PARP4P3 NA AC005301.1 NA NA NA NA NA NA +10:84205927 7:137610444 CDHR1--DGKI BS_VA5T4KAA ARRIBA frameshift 64 4 high [INTERCHROMOSOMAL[chr10--chr7]],translocation/5'-5' CDHR1 NA DGKI NA NA NA NA NA NA +7:137599823 10:84182761 DGKI--C10orf99 BS_VA5T4KAA ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr7--chr10]],translocation/5'-5' DGKI NA C10orf99 NA NA NA NA NA NA +7:107893278 7:108150147 DLD--NRCAM BS_VA5T4KAA ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr7:0.22Mb]],inversion DLD NA NRCAM NA NA TumorSuppressorGene, Oncogene NA NA NA +7:107903547 7:108160492 DLD--NRCAM BS_VA5T4KAA ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:0.22Mb]],inversion DLD NA NRCAM NA NA TumorSuppressorGene, Oncogene NA NA NA +6:65490594 6:65495993 EYS--EYS BS_VA5T4KAA ARRIBA frameshift 33 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +X:152284668 X:152458262 GABRA3--GABRA3(6904)/KRT8P8(21315) BS_VA5T4KAA ARRIBA frameshift 2 0 medium [],duplication GABRA3 NA GABRA3 KRT8P8 NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_VA5T4KAA ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_VA5T4KAA ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_VA5T4KAA ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +2:210104104 2:210220802 KANSL1L--ACADL BS_VA5T4KAA ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:-:[16556]],duplication KANSL1L NA ACADL NA NA NA NA NA NA +2:131639178 2:131553013 LINC01087--MED15P4(16025)/POTEKP(38739) BS_VA5T4KAA ARRIBA other 5 0 medium [],duplication LINC01087 NA MED15P4 POTEKP NA NA NA NA NA +2:131613103 2:131553013 POTEKP--MED15P4(16025)/POTEKP(38739) BS_VA5T4KAA ARRIBA other 3 0 medium [],duplication POTEKP NA MED15P4 POTEKP NA NA NA NA NA +14:20343160 14:49586587 RPPH1--AL139099.5 BS_VA5T4KAA STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA AL139099.5 NA NA NA NA NA NA +14:20343160 14:49586587 RPPH1--RN7SL1 BS_VA5T4KAA STARFUSION other 3 12 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VA5T4KAA ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:85065424 7:85224441 SEMA3D--SEMA3D(37586)/DYNLL1P7(156677) BS_VA5T4KAA ARRIBA frameshift 2 0 low [],duplication SEMA3D NA SEMA3D DYNLL1P7 NA NA NA NA NA +11:17988597 11:18040788 SERGEF--TPH1 BS_VA5T4KAA ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[4402]],duplication SERGEF NA TPH1 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_VA5T4KAA ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +1:216321883 1:216327654 USH2A--USH2A BS_VA5T4KAA ARRIBA frameshift 19 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_VAAHBH60 ARRIBA in-frame 90 9 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662088 C11orf95--RELA BS_VAAHBH60 ARRIBA in-frame 5 4 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_VAAHBH60 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_VAAHBH60 STARFUSION in-frame 93 11 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764836 11:65663534 C11orf95--RELA(440)/RN7SL309P(32018) BS_VAAHBH60 ARRIBA frameshift 128 8 high [],duplication C11orf95 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA +11:74074253 11:64152393 C2CD3--MACROD1 BS_VAAHBH60 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:9.85Mb]],deletion C2CD3 NA MACROD1 NA NA Oncogene NA NA NA +11:74074253 11:64176995 C2CD3--MACROD1(10889)/STIP1(8277) BS_VAAHBH60 ARRIBA frameshift 3 1 high [],deletion C2CD3 NA MACROD1 STIP1 NA Oncogene NA NA NA +19:50020585 19:50066384 VRK3--AC010624.1 BS_VAAHBH60 ARRIBA other 8 0 high [INTRACHROMOSOMAL[chr19:0.02Mb],LOCAL_INVERSION:-:+:[24643]],duplication/5'-5' VRK3 NA AC010624.1 NA Kinase, Kinase NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VARR255N ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VARR255N ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_VARR255N ARRIBA in-frame 3 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +9:35657837 14:49586591 RMRP--AL139099.5 BS_VARR255N STARFUSION other 11 3 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL139099.5 NA Oncogene NA NA NA NA +9:35657837 14:49586591 RMRP--RN7SL1 BS_VARR255N STARFUSION other 11 3 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA RN7SL1 NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VARR255N ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:17229380 14:49586598 VIM-AS1--AL139099.5 BS_VARR255N STARFUSION other 13 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA AL139099.5 NA NA NA NA NA NA +10:17229380 14:49586598 VIM-AS1--RN7SL1 BS_VARR255N STARFUSION other 13 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VF5XWFXD ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VF5XWFXD ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +12:3806303 3:14160548 PARP11--XPC BS_VF5XWFXD ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr12--chr3]],translocation PARP11 NA XPC NA NA CosmicCensus, Oncogene NA NA NA +2:222294167 2:221587487 PAX3--AC079834.2(13033)/AC079834.1(4954) BS_VF5XWFXD ARRIBA frameshift 6 0 high [],deletion PAX3 NA AC079834.2 AC079834.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VF5XWFXD ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:63664647 1:162720491 AC022387.1--DDR2 BS_VJ2S5DVS ARRIBA other 9 1 medium [INTERCHROMOSOMAL[chr10--chr1]],translocation/3'-3' AC022387.1 NA DDR2 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA +12:55789075 6:80582878 AC023055.1--AL590824.1(25689)/FAM46A(908561) BS_VJ2S5DVS ARRIBA other 18 1 high [],translocation AC023055.1 NA AL590824.1 FAM46A NA NA NA NA NA +12:55789075 6:80612165 AC023055.1--AL590824.1(54976)/FAM46A(879274) BS_VJ2S5DVS ARRIBA frameshift 3 0 medium [],translocation AC023055.1 NA AL590824.1 FAM46A NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_VJ2S5DVS ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +19:36491155 1:23620108 AC092295.2--MDS2 BS_VJ2S5DVS ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr19--chr1]],translocation/5'-5' AC092295.2 NA MDS2 NA NA CosmicCensus, Oncogene NA NA NA +9:41272915 9:63817578 AL845472.1--CR786580.1(3419)/DUX4L50(170) BS_VJ2S5DVS ARRIBA other 1 1 medium [],inversion AL845472.1 NA CR786580.1 DUX4L50 NA NA NA NA NA +9:16552530 10:50519921 BNC2--SGMS1 BS_VJ2S5DVS ARRIBA frameshift 8 2 high [INTERCHROMOSOMAL[chr9--chr10]],translocation BNC2 NA SGMS1 NA TranscriptionFactor TumorSuppressorGene, Oncogene NA NA NA +16:53157541 16:47587668 CHD9--PHKB BS_VJ2S5DVS ARRIBA in-frame 26 1 high [INTRACHROMOSOMAL[chr16:5.35Mb]],duplication CHD9 NA PHKB NA Oncogene NA NA NA NA +16:53157541 16:47587668 CHD9--PHKB BS_VJ2S5DVS STARFUSION in-frame 26 1 NA [INTRACHROMOSOMAL[chr16:5.35Mb]] CHD9 NA PHKB NA Oncogene NA NA NA NA +10:49482687 9:15531218 ERCC6--FTH1P12(3535)/RNU6-246P(12970) BS_VJ2S5DVS ARRIBA frameshift 5 0 high [],translocation ERCC6 NA FTH1P12 RNU6-246P Oncogene NA NA NA NA +16:57153182 12:39557678 FAM192A--ABCD2 BS_VJ2S5DVS ARRIBA other 7 1 medium [INTERCHROMOSOMAL[chr16--chr12]],translocation/5'-5' FAM192A NA ABCD2 NA NA NA NA NA NA +13:102401471 13:99238427 FGF14--UBAC2 BS_VJ2S5DVS ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr13:2.32Mb]],inversion FGF14 NA UBAC2 NA Oncogene NA NA NA NA +7:42223130 7:39659110 GLI3--RALA BS_VJ2S5DVS ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:2.25Mb]],deletion/5'-5' GLI3 NA RALA NA Oncogene, TranscriptionFactor Oncogene NA NA NA +12:39442927 16:80543276 KIF21A--DYNLRB2 BS_VJ2S5DVS ARRIBA frameshift 19 0 high [INTERCHROMOSOMAL[chr12--chr16]],translocation KIF21A NA DYNLRB2 NA NA NA NA NA NA +12:39442927 16:80543276 KIF21A--DYNLRB2 BS_VJ2S5DVS STARFUSION frameshift 19 0 NA [INTERCHROMOSOMAL[chr12--chr16]] KIF21A NA DYNLRB2 NA NA NA NA NA NA +12:39301480 9:15443677 KIF21A--SNAPC3 BS_VJ2S5DVS ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr12--chr9]],translocation/5'-5' KIF21A NA SNAPC3 NA NA Oncogene NA NA NA +18:6973057 18:6980637 LAMA1--LAMA1 BS_VJ2S5DVS ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA +2:149486345 2:149449049 LYPD6(12197)/MMADHC(83289)--LYPD6 BS_VJ2S5DVS ARRIBA other 2 2 medium [],duplication LYPD6 MMADHC LYPD6 NA NA NA NA NA NA +9:136522850 9:136708560 NOTCH1--AGPAT2(21137)/FAM69B(4010) BS_VJ2S5DVS ARRIBA frameshift 33 5 high [],duplication NOTCH1 NA AGPAT2 FAM69B TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +13:100449305 13:102297887 PCCA--FGF14 BS_VJ2S5DVS ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr13:1.18Mb]],deletion/5'-5' PCCA NA FGF14 NA NA Oncogene NA NA NA +13:100449305 13:102297887 PCCA--FGF14-IT1 BS_VJ2S5DVS ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr13:1.76Mb]],deletion/5'-5' PCCA NA FGF14-IT1 NA NA NA NA NA NA +19:17517850 19:17370443 PGLS--PLVAP BS_VJ2S5DVS ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr19:0.13Mb]],duplication/5'-5' PGLS NA PLVAP NA NA NA NA NA NA +16:47610920 16:53155926 PHKB--CHD9 BS_VJ2S5DVS ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr16:5.35Mb]],deletion PHKB NA CHD9 NA NA Oncogene NA NA NA +16:47641692 16:53155926 PHKB--CHD9 BS_VJ2S5DVS ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr16:5.35Mb]],deletion PHKB NA CHD9 NA NA Oncogene NA NA NA +3:138759173 3:140312697 PIK3CB--CLSTN2 BS_VJ2S5DVS ARRIBA frameshift 6 1 high [CCLE,INTRACHROMOSOMAL[chr3:1.10Mb]],duplication/5'-5' PIK3CB NA CLSTN2 NA CosmicCensus, Kinase NA NA NA NA +9:15468858 12:39306863 PSIP1--KIF21A BS_VJ2S5DVS ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr9--chr12]],translocation/3'-3' PSIP1 NA KIF21A NA CosmicCensus, Oncogene NA NA NA NA +16:53462655 X:14439051 RBL2--AC002524.1(194123)/GLRA2(90247) BS_VJ2S5DVS ARRIBA frameshift 11 1 high [],translocation RBL2 NA AC002524.1 GLRA2 TumorSuppressorGene, Oncogene NA NA NA NA +16:57186451 9:15444602 RSPRY1--SNAPC3 BS_VJ2S5DVS ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr9]],translocation RSPRY1 NA SNAPC3 NA NA Oncogene NA NA NA +16:57186785 9:15444602 RSPRY1--SNAPC3 BS_VJ2S5DVS ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr9]],translocation RSPRY1 NA SNAPC3 NA NA Oncogene NA NA NA +12:55789075 6:80582878 SARNP--AL590824.1(25689)/FAM46A(908561) BS_VJ2S5DVS ARRIBA frameshift 18 1 high [],translocation SARNP NA AL590824.1 FAM46A Oncogene NA NA NA NA +12:55789075 6:80612165 SARNP--AL590824.1(54976)/FAM46A(879274) BS_VJ2S5DVS ARRIBA frameshift 3 0 medium [],translocation SARNP NA AL590824.1 FAM46A Oncogene NA NA NA NA +10:50433476 9:16583085 SGMS1--BNC2 BS_VJ2S5DVS ARRIBA other 6 0 high [INTERCHROMOSOMAL[chr10--chr9]],translocation SGMS1 NA BNC2 NA TumorSuppressorGene, Oncogene TranscriptionFactor NA NA NA +12:39764460 10:49693774 SLC2A13--C10orf53 BS_VJ2S5DVS ARRIBA in-frame 2 1 high [INTERCHROMOSOMAL[chr12--chr10]],translocation SLC2A13 NA C10orf53 NA NA NA NA NA NA +9:15462990 12:39304938 SNAPC3--KIF21A BS_VJ2S5DVS ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr9--chr12]],translocation SNAPC3 NA KIF21A NA Oncogene NA NA NA NA +4:4541797 6:155871374 STX18--RNU7-152P(216348)/MIR1202(75423) BS_VJ2S5DVS ARRIBA frameshift 2 0 medium [],translocation STX18 NA RNU7-152P MIR1202 NA NA NA NA NA +17:28341460 16:54751101 TNFAIP1--AC007491.1(93439)/CRNDE(94088) BS_VJ2S5DVS ARRIBA frameshift 13 0 medium [],translocation TNFAIP1 NA AC007491.1 CRNDE Oncogene NA NA NA NA +19:12731344 19:12737804 TRIR--ASNA1 BS_VJ2S5DVS ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr19:0.00Mb],LOCAL_INVERSION:-:+:[2364]],duplication/5'-5' TRIR NA ASNA1 NA NA NA NA NA NA +10:21369967 10:21172477 AL158209.1--NEBL BS_VJAC9H58 STARFUSION other 11 1 NA [INTRACHROMOSOMAL[chr10:0.17Mb]] AL158209.1 NA NEBL NA NA NA NA NA NA +16:53157541 3:86978802 CHD9--VGLL3 BS_VJAC9H58 ARRIBA in-frame 48 4 high [INTERCHROMOSOMAL[chr16--chr3]],translocation CHD9 NA VGLL3 NA Oncogene NA NA NA NA +16:53157541 3:86978643 CHD9--VGLL3 BS_VJAC9H58 ARRIBA in-frame 19 1 high [INTERCHROMOSOMAL[chr16--chr3]],translocation CHD9 NA VGLL3 NA Oncogene NA NA NA NA +16:53157541 3:86978802 CHD9--VGLL3 BS_VJAC9H58 STARFUSION in-frame 49 4 NA [INTERCHROMOSOMAL[chr16--chr3]] CHD9 NA VGLL3 NA Oncogene NA NA NA NA +16:53157541 3:86978643 CHD9--VGLL3 BS_VJAC9H58 STARFUSION in-frame 20 4 NA [INTERCHROMOSOMAL[chr16--chr3]] CHD9 NA VGLL3 NA Oncogene NA NA NA NA +16:53157541 3:86978799 CHD9--VGLL3 BS_VJAC9H58 STARFUSION in-frame 7 4 NA [INTERCHROMOSOMAL[chr16--chr3]] CHD9 NA VGLL3 NA Oncogene NA NA NA NA +3:86968590 16:53141179 VGLL3--CHD9 BS_VJAC9H58 ARRIBA frameshift 9 1 medium [INTERCHROMOSOMAL[chr3--chr16]],translocation VGLL3 NA CHD9 NA NA Oncogene NA NA NA +3:86968590 16:53155926 VGLL3--CHD9 BS_VJAC9H58 ARRIBA frameshift 6 1 medium [INTERCHROMOSOMAL[chr3--chr16]],translocation VGLL3 NA CHD9 NA NA Oncogene NA NA NA +3:86978526 16:53155926 VGLL3--CHD9 BS_VJAC9H58 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr3--chr16]],translocation VGLL3 NA CHD9 NA NA Oncogene NA NA NA +3:86947010 16:53155926 VGLL3--CHD9 BS_VJAC9H58 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr3--chr16]],translocation VGLL3 NA CHD9 NA NA Oncogene NA NA NA +3:86990618 16:53209482 VGLL3--CHD9 BS_VJAC9H58 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr3--chr16]],translocation VGLL3 NA CHD9 NA NA Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VJVDJABP ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VJVDJABP ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_VJVDJABP ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_VJVDJABP ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_VJVDJABP ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +1:181511510 1:181483744 CACNA1E--CACNA1E BS_VJVDJABP ARRIBA in-frame 24 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +10:77073097 10:77090510 KCNMA1--KCNMA1 BS_VJVDJABP ARRIBA frameshift 21 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr10:0.77Mb]],duplication/non-canonical_splicing KCNMA1 NA KCNMA1 NA NA NA NA NA NA +2:8060348 2:8392968 LINC00299--LINC00299(9347)/AC011747.2(150624) BS_VJVDJABP ARRIBA other 1 1 low [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VJVDJABP ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VMEX27TN ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VMEX27TN ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:19142058 5:18772753 AC106744.1--LINC02100 BS_VMEX27TN STARFUSION other 10 4 NA [INTRACHROMOSOMAL[chr5:0.22Mb]] AC106744.1 NA LINC02100 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_VMEX27TN ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_VMEX27TN ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +2:86526566 9:27941031 CHMP3--AL353746.1 BS_VMEX27TN ARRIBA other 5 0 low [INTERCHROMOSOMAL[chr2--chr9]],translocation CHMP3 NA AL353746.1 NA NA NA NA NA NA +5:18745998 5:18779516 LINC02100--LINC02100(33343)/UBE2V1P12(107106) BS_VMEX27TN ARRIBA other 5 1 low [],duplication LINC02100 NA LINC02100 UBE2V1P12 NA NA NA NA NA +2:86526566 9:27941031 RNF103-CHMP3--AL353746.1 BS_VMEX27TN ARRIBA other 5 0 low [INTERCHROMOSOMAL[chr2--chr9]],translocation RNF103-CHMP3 NA AL353746.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VMEX27TN ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:114947320 1:114923449 SYCP1--SYCP1 BS_VMEX27TN ARRIBA frameshift 21 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VMMJYN8Z ARRIBA other 151 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VMMJYN8Z ARRIBA other 151 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_VMMJYN8Z ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_VMMJYN8Z ARRIBA frameshift 2 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_VMMJYN8Z ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_VMMJYN8Z ARRIBA frameshift 8 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_VMMJYN8Z ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_VMMJYN8Z ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_VMMJYN8Z ARRIBA frameshift 18 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_VMMJYN8Z ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +17:7656768 14:49862818 ATP1B2--RN7SL2 BS_VMMJYN8Z STARFUSION other 18 2 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_VMMJYN8Z ARRIBA frameshift 18 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +16:61789346 16:61825179 CDH8--CDH8 BS_VMMJYN8Z ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.39Mb]],duplication/non-canonical_splicing CDH8 NA CDH8 NA NA NA NA NA NA +1:58506060 1:58539310 DAB1--OMA1 BS_VMMJYN8Z ARRIBA other 13 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58536741 DAB1--OMA1 BS_VMMJYN8Z ARRIBA other 9 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58534331 DAB1--OMA1 BS_VMMJYN8Z ARRIBA other 9 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58253807 1:58539310 DAB1--OMA1 BS_VMMJYN8Z ARRIBA other 1 5 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58527261 1:58539310 DAB1--OMA1 BS_VMMJYN8Z ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +7:137463489 7:137609609 DGKI--DGKI BS_VMMJYN8Z ARRIBA frameshift 21 4 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +9:23731022 9:23765099 ELAVL2--ELAVL2 BS_VMMJYN8Z ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_VMMJYN8Z ARRIBA in-frame 49 11 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_VMMJYN8Z ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_VMMJYN8Z ARRIBA in-frame 4 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_VMMJYN8Z ARRIBA frameshift 18 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_VMMJYN8Z ARRIBA frameshift 2 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_VMMJYN8Z ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_VMMJYN8Z ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_VMMJYN8Z ARRIBA frameshift 8 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_VMMJYN8Z ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_VMMJYN8Z ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_VMMJYN8Z ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_VMMJYN8Z ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_VMMJYN8Z ARRIBA frameshift 18 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_VMMJYN8Z ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_VMMJYN8Z ARRIBA other 5 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +3:178801793 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_VMMJYN8Z ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_VMMJYN8Z ARRIBA other 6 3 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +11:33547879 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_VMMJYN8Z ARRIBA frameshift 2 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_VMMJYN8Z ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_VMMJYN8Z ARRIBA other 8 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_VMMJYN8Z ARRIBA other 3 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +8:17341363 8:17373240 MTMR7--MTMR7 BS_VMMJYN8Z ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_VMMJYN8Z ARRIBA other 4 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +7:77951712 7:77920279 PHTF2--PHTF2 BS_VMMJYN8Z ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_VMMJYN8Z ARRIBA in-frame 23 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_VMMJYN8Z ARRIBA frameshift 2 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19709542 13:19835689 PSPC1--ZMYM5 BS_VMMJYN8Z ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19782386 13:19835689 PSPC1--ZMYM5 BS_VMMJYN8Z ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_VMMJYN8Z ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VMMJYN8Z ARRIBA other 151 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_VMMJYN8Z ARRIBA other 7 0 medium [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +8:52142930 8:52166986 ST18--ST18 BS_VMMJYN8Z ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_VMMJYN8Z ARRIBA in-frame 10 4 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_VMMJYN8Z ARRIBA other 3 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_VMQMGSJY ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +19:2108687 3:48980346 AP3D1--AC137630.2 BS_VMQMGSJY ARRIBA frameshift 39 2 high [INTERCHROMOSOMAL[chr19--chr3]],translocation AP3D1 NA AC137630.2 NA NA NA NA NA NA +19:2108687 3:48980346 AP3D1--AC137630.2 BS_VMQMGSJY STARFUSION other 39 2 NA [INTERCHROMOSOMAL[chr19--chr3]] AP3D1 NA AC137630.2 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_VMQMGSJY ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +14:71089342 14:72727928 PCNX1--DPF3 BS_VMQMGSJY ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr14:1.50Mb]],deletion/5'-5' PCNX1 NA DPF3 NA NA TranscriptionFactor NA NA NA +8:105634357 8:106272366 ZFPM2--AC027031.2 BS_VMQMGSJY ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr8:0.47Mb]],inversion/3'-3' ZFPM2 NA AC027031.2 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VNE0ZPBS ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VNE0ZPBS ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_VNE0ZPBS ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +2:9555509 2:9587509 ADAM17--YWHAQ BS_VNE0ZPBS ARRIBA frameshift 4 2 medium [Klijn_CellLines,FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr2:0.03Mb],LOCAL_REARRANGEMENT:-:[28180]],duplication ADAM17 NA YWHAQ NA NA NA NA NA TCGAFusion +X:33725628 X:33020200 AL050305.1(313455)/AL591501.1(880)--DMD BS_VNE0ZPBS ARRIBA other 3 0 high [],deletion AL050305.1 AL591501.1 DMD NA NA TumorSuppressorGene NA NA NA +14:49586869 14:20343397 AL139099.5--AL355075.4 BS_VNE0ZPBS STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586873 14:20343402 AL139099.5--RPPH1 BS_VNE0ZPBS STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_VNE0ZPBS ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_VNE0ZPBS ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_VNE0ZPBS ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_VNE0ZPBS ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_VNE0ZPBS ARRIBA frameshift 17 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_VNE0ZPBS ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_VNE0ZPBS ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_VNE0ZPBS ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_VNE0ZPBS ARRIBA other 18 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +2:143624267 2:143228581 ARHGAP15--ARHGAP15 BS_VNE0ZPBS ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.68Mb]],duplication/non-canonical_splicing ARHGAP15 NA ARHGAP15 NA NA NA NA NA NA +18:79307234 18:79193183 ATP9B--ATP9B BS_VNE0ZPBS ARRIBA frameshift 9 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_VNE0ZPBS ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +6:56074232 6:56156949 COL21A1--COL21A1 BS_VNE0ZPBS ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.34Mb]],duplication/non-canonical_splicing COL21A1 NA COL21A1 NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_VNE0ZPBS ARRIBA frameshift 13 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +9:23762006 9:23765099 ELAVL2--ELAVL2 BS_VNE0ZPBS ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_VNE0ZPBS ARRIBA in-frame 56 10 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +20:47074335 20:47072185 EYA2--EYA2 BS_VNE0ZPBS ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.29Mb]],duplication/non-canonical_splicing EYA2 NA EYA2 NA NA NA NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_VNE0ZPBS ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_VNE0ZPBS ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_VNE0ZPBS ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_VNE0ZPBS ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_VNE0ZPBS ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211107377 KCNH1--AL590132.1 BS_VNE0ZPBS ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_VNE0ZPBS ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_VNE0ZPBS ARRIBA frameshift 17 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_VNE0ZPBS ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_VNE0ZPBS ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_VNE0ZPBS ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_VNE0ZPBS ARRIBA frameshift 17 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_VNE0ZPBS ARRIBA frameshift 10 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_VNE0ZPBS ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +4:53476753 4:53481854 LNX1--LNX1 BS_VNE0ZPBS ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.24Mb]],duplication/non-canonical_splicing LNX1 NA LNX1 NA NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_VNE0ZPBS ARRIBA in-frame 16 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_VNE0ZPBS ARRIBA other 5 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_VNE0ZPBS ARRIBA other 8 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_VNE0ZPBS ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_VNE0ZPBS ARRIBA in-frame 20 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +14:49586873 14:20343402 RN7SL1--AL355075.4 BS_VNE0ZPBS STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586869 14:20343397 RN7SL1--RPPH1 BS_VNE0ZPBS STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VNE0ZPBS ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:121318540 3:121279805 STXBP5L--STXBP5L BS_VNE0ZPBS ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.52Mb]],duplication/non-canonical_splicing STXBP5L NA STXBP5L NA NA NA NA NA NA +1:88528836 1:88570859 uc_338(8666)/PKN2-AS1(8677)--PKN2-AS1 BS_VNE0ZPBS ARRIBA other 3 1 medium [],duplication uc_338 PKN2-AS1 PKN2-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VNK9XYV9 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VNK9XYV9 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_VNK9XYV9 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +7:45662214 7:45622632 ADCY1--ADCY1 BS_VNK9XYV9 ARRIBA frameshift 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.15Mb]],duplication/non-canonical_splicing ADCY1 NA ADCY1 NA NA NA NA NA NA +7:138894342 7:138919438 KIAA1549--KIAA1549 BS_VNK9XYV9 ARRIBA frameshift 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.15Mb]],duplication/non-canonical_splicing KIAA1549 NA KIAA1549 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_VNK9XYV9 ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_VNK9XYV9 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +6:52995854 14:49862664 RN7SK--RN7SL2 BS_VNK9XYV9 STARFUSION other 4 7 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +14:49862574 6:52995628 RN7SL2--7SK BS_VNK9XYV9 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VNK9XYV9 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +17:4366271 17:4018293 UBE2G1--ZZEF1 BS_VNK9XYV9 ARRIBA frameshift 2 1 high [CCLE,Klijn_CellLines,INTRACHROMOSOMAL[chr17:0.13Mb]],inversion/5'-5' UBE2G1 NA ZZEF1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VNWKNRY4 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VNWKNRY4 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:2833253 2:2834506 AC018685.1(102296)/AC011995.2(1011)--AC011995.2 BS_VNWKNRY4 ARRIBA other 15 2 high [],duplication AC018685.1 AC011995.2 AC011995.2 NA NA NA NA NA NA +21:9966891 21:9975104 AC018692.1(52045)/CR382285.1(8126)--CR382285.1 BS_VNWKNRY4 ARRIBA other 6 0 medium [],duplication AC018692.1 CR382285.1 CR382285.1 NA NA NA NA NA NA +11:6110264 11:5680238 AC022762.1--TRIM5 BS_VNWKNRY4 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr11:0.17Mb]],deletion AC022762.1 NA TRIM5 NA NA NA NA NA NA +14:77979938 14:77859076 ADCK1(44926)/FXNP1(80004)--ADCK1 BS_VNWKNRY4 ARRIBA other 21 0 medium [],duplication ADCK1 FXNP1 ADCK1 NA Kinase Kinase NA NA NA +14:78021859 14:77859076 ADCK1(86847)/FXNP1(38083)--ADCK1 BS_VNWKNRY4 ARRIBA other 16 3 high [],duplication ADCK1 FXNP1 ADCK1 NA Kinase Kinase NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_VNWKNRY4 ARRIBA other 6 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +7:69599962 3:23968 AUTS2--LINC01986 BS_VNWKNRY4 ARRIBA frameshift 12 2 high [INTERCHROMOSOMAL[chr7--chr3]],translocation AUTS2 NA LINC01986 NA NA NA NA NA NA +7:69599962 3:23968 AUTS2--LINC01986 BS_VNWKNRY4 STARFUSION other 14 2 NA [INTERCHROMOSOMAL[chr7--chr3]] AUTS2 NA LINC01986 NA NA NA NA NA NA +22:11068154 22:10752913 CU104787.1--U2(16630)/CU459211.1(186475) BS_VNWKNRY4 ARRIBA other 6 0 low [],inversion CU104787.1 NA U2 CU459211.1 NA NA NA NA NA +9:111640748 5:172897002 DNAJC25--ERGIC1 BS_VNWKNRY4 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr9--chr5]],translocation DNAJC25 NA ERGIC1 NA NA NA NA NA NA +9:120772754 11:15614130 FBXW2--AC073172.1 BS_VNWKNRY4 ARRIBA frameshift 25 4 high [INTERCHROMOSOMAL[chr9--chr11]],translocation/5'-5' FBXW2 NA AC073172.1 NA NA NA NA NA NA +22:36501241 20:9506938 FOXRED2--LAMP5-AS1 BS_VNWKNRY4 ARRIBA frameshift 39 0 high [INTERCHROMOSOMAL[chr22--chr20]],translocation/5'-5' FOXRED2 NA LAMP5-AS1 NA NA NA NA NA NA +5:95822456 5:95830298 GLRX--RHOBTB3(5915)/AC008592.3(4126) BS_VNWKNRY4 ARRIBA frameshift 5 1 high [],duplication GLRX NA RHOBTB3 AC008592.3 NA NA NA NA NA +11:1599051 11:71564779 KRTAP5-AS1--KRTAP5-9(15226)/KRTAP5-10(784) BS_VNWKNRY4 ARRIBA other 2 0 low [],inversion KRTAP5-AS1 NA KRTAP5-9 KRTAP5-10 NA NA NA NA NA +20:9507185 22:36487703 LAMP5-AS1--FOXRED2 BS_VNWKNRY4 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr20--chr22]],translocation/3'-3' LAMP5-AS1 NA FOXRED2 NA NA NA NA NA NA +15:21617244 15:21595606 LINC02203--LINC02203 BS_VNWKNRY4 ARRIBA other 10 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.10Mb]],duplication/non-canonical_splicing LINC02203 NA LINC02203 NA NA NA NA NA NA +12:81676791 12:85014555 PPFIA2--TSPAN19 BS_VNWKNRY4 ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr12:3.25Mb]],duplication PPFIA2 NA TSPAN19 NA NA NA NA NA NA +12:81676791 12:85029791 PPFIA2--TSPAN19 BS_VNWKNRY4 ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr12:3.25Mb]],duplication PPFIA2 NA TSPAN19 NA NA NA NA NA NA +12:81597952 12:85029973 PPFIA2--TSPAN19 BS_VNWKNRY4 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr12:3.25Mb]],duplication PPFIA2 NA TSPAN19 NA NA NA NA NA NA +12:81676791 12:85029973 PPFIA2--TSPAN19 BS_VNWKNRY4 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr12:3.25Mb]],duplication PPFIA2 NA TSPAN19 NA NA NA NA NA NA +12:81676791 12:85017599 PPFIA2--TSPAN19 BS_VNWKNRY4 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr12:3.25Mb]],duplication PPFIA2 NA TSPAN19 NA NA NA NA NA NA +12:81753973 12:85029973 PPFIA2--TSPAN19 BS_VNWKNRY4 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:3.25Mb]],duplication PPFIA2 NA TSPAN19 NA NA NA NA NA NA +12:15504069 12:15483974 PTPRO--PTPRO BS_VNWKNRY4 ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRO NA PTPRO NA NA NA NA NA NA +14:49586864 6:52995785 RN7SL1--RN7SK BS_VNWKNRY4 STARFUSION other 3 9 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL1 NA RN7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VNWKNRY4 ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:122849419 5:172897002 SMPDL3A(39699)/ATP5LP2(10259)--ERGIC1 BS_VNWKNRY4 ARRIBA other 1 0 low [],translocation SMPDL3A ATP5LP2 ERGIC1 NA NA NA NA NA NA +4:185956196 5:96873378 SORBS2--AC009126.1 BS_VNWKNRY4 ARRIBA other 4 1 high [INTERCHROMOSOMAL[chr4--chr5]],translocation SORBS2 NA AC009126.1 NA Oncogene NA NA NA NA +4:185932936 5:96873378 SORBS2--AC009126.1 BS_VNWKNRY4 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr4--chr5]],translocation SORBS2 NA AC009126.1 NA Oncogene NA NA NA NA +17:18804266 17:15440285 TVP23B--CDRT4 BS_VNWKNRY4 ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_VP3C8WZT ARRIBA in-frame 10 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138861139 7:140787584 KIAA1549--BRAF BS_VP3C8WZT STARFUSION in-frame 11 2 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +X:54248697 X:54259338 WNK3--WNK3 BS_VP3C8WZT ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.17Mb]],duplication/non-canonical_splicing WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VP5Y45Z7 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VP5Y45Z7 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:7656768 14:49862815 ATP1B2--RN7SL2 BS_VP5Y45Z7 STARFUSION other 14 2 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +14:31302295 14:31347907 HEATR5A--HEATR5A BS_VP5Y45Z7 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing HEATR5A NA HEATR5A NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VP5Y45Z7 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VPBMDMQX ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VPBMDMQX ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:21617244 15:21595606 LINC02203--LINC02203 BS_VPBMDMQX ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.10Mb]],duplication/non-canonical_splicing LINC02203 NA LINC02203 NA NA NA NA NA NA +19:14458375 19:41888064 PKN1--ARHGEF1 BS_VPBMDMQX ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr19:27.41Mb]],deletion PKN1 NA ARHGEF1 NA Kinase, Kinase NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VPBMDMQX ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VPMKHW9X ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VPMKHW9X ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_VPMKHW9X ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +1:210919640 1:211107377 AL590132.1--KCNH1 BS_VPMKHW9X ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_VPMKHW9X ARRIBA frameshift 14 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_VPMKHW9X ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_VPMKHW9X ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_VPMKHW9X ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_VPMKHW9X ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_VPMKHW9X ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_VPMKHW9X ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_VPMKHW9X ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211103602 AL590132.1--KCNH1 BS_VPMKHW9X ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +2:231331897 2:231282059 ARMC9--ARMC9 BS_VPMKHW9X ARRIBA in-frame 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing ARMC9 NA ARMC9 NA NA NA NA NA NA +3:2903005 3:2883145 CNTN4--CNTN4 BS_VPMKHW9X ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA +1:58506060 1:58539310 DAB1--OMA1 BS_VPMKHW9X ARRIBA other 9 2 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58253807 1:58539310 DAB1--OMA1 BS_VPMKHW9X ARRIBA other 2 2 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58536741 DAB1--OMA1 BS_VPMKHW9X ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58534331 DAB1--OMA1 BS_VPMKHW9X ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +7:137463489 7:137609609 DGKI--DGKI BS_VPMKHW9X ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_VPMKHW9X ARRIBA in-frame 43 4 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_VPMKHW9X ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_VPMKHW9X ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_VPMKHW9X ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211107377 KCNH1--AL590132.1 BS_VPMKHW9X ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_VPMKHW9X ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_VPMKHW9X ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_VPMKHW9X ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_VPMKHW9X ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211103602 KCNH1--AL590132.1 BS_VPMKHW9X ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_VPMKHW9X ARRIBA frameshift 14 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_VPMKHW9X ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_VPMKHW9X ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:211019256 KCNH1--AL590132.1 BS_VPMKHW9X ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_VPMKHW9X ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_VPMKHW9X ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_VPMKHW9X ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_VPMKHW9X ARRIBA frameshift 11 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_VPMKHW9X ARRIBA in-frame 13 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_VPMKHW9X ARRIBA other 12 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +6:118813102 6:118856545 MCM9--MCM9 BS_VPMKHW9X ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +14:46920012 14:47035304 MDGA2--MDGA2 BS_VPMKHW9X ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_VPMKHW9X ARRIBA other 11 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_VPMKHW9X ARRIBA in-frame 16 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VPMKHW9X ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_VPMKHW9X ARRIBA other 1 2 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_VPMKHW9X ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VR7FR1NE ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VR7FR1NE ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:7804692 5:7784365 ADCY2--ADCY2 BS_VR7FR1NE ARRIBA frameshift 8 2 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_VR7FR1NE ARRIBA other 17 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +3:178859489 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_VR7FR1NE ARRIBA other 4 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_VR7FR1NE ARRIBA other 5 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_VR7FR1NE ARRIBA in-frame 8 4 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +12:44815986 12:44881839 NELL2--NELL2 BS_VR7FR1NE ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VR7FR1NE ARRIBA other 42 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_VR7FR1NE ARRIBA other 2 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +6:52995907 14:20343397 7SK--AL355075.4 BS_VT6C6N6K STARFUSION other 4 9 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA AL355075.4 NA NA NA NA NA NA +6:52995907 14:20343396 7SK--RPPH1 BS_VT6C6N6K STARFUSION other 4 9 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VT6C6N6K ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VT6C6N6K ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VT6C6N6K ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VTJ9ESSV ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VTJ9ESSV ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_VTJ9ESSV ARRIBA other 13 2 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_VTJ9ESSV ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_VTJ9ESSV ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_VTJ9ESSV ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_VTJ9ESSV ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_VTJ9ESSV ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_VTJ9ESSV ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_VTJ9ESSV ARRIBA frameshift 2 1 medium [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_VTJ9ESSV ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_VTJ9ESSV ARRIBA in-frame 24 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_VTJ9ESSV ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_VTJ9ESSV ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_VTJ9ESSV ARRIBA in-frame 3 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_VTJ9ESSV ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_VTJ9ESSV ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_VTJ9ESSV ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_VTJ9ESSV ARRIBA frameshift 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_VTJ9ESSV ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_VTJ9ESSV ARRIBA other 4 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_VTJ9ESSV ARRIBA other 5 1 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +12:44665484 12:44714741 NELL2--NELL2 BS_VTJ9ESSV ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_VTJ9ESSV ARRIBA in-frame 9 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_VTJ9ESSV ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VTJ9ESSV ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_VTJ9ESSV ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VVFBW0YH ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VVFBW0YH ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:9743302 7:9708001 AC060834.2--AC096553.1(72298)/AC060834.1(18240) BS_VVFBW0YH ARRIBA other 6 1 medium [],duplication AC060834.2 NA AC096553.1 AC060834.1 NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_VVFBW0YH ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_VVFBW0YH ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_VVFBW0YH ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100561397 CAVIN4--MSANTD3-TMEFF1 BS_VVFBW0YH ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_VVFBW0YH ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100561397 CAVIN4--TMEFF1 BS_VVFBW0YH ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +6:65490594 6:65495993 EYS--EYS BS_VVFBW0YH ARRIBA frameshift 18 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_VVFBW0YH ARRIBA frameshift 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +13:45252970 13:57666468 GTF2F2--PCDH17 BS_VVFBW0YH ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr13:12.35Mb]],deletion GTF2F2 NA PCDH17 NA NA TumorSuppressorGene NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_VVFBW0YH ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +10:87288442 10:50667098 NUTM2A-AS1--BEND3P1(6626)/NUTM2HP(9645) BS_VVFBW0YH ARRIBA other 2 0 medium [],deletion NUTM2A-AS1 NA BEND3P1 NUTM2HP NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_VVFBW0YH ARRIBA frameshift 2 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19677724 13:19835689 PSPC1--ZMYM5 BS_VVFBW0YH ARRIBA other 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_VVFBW0YH ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +11:14358763 17:46902896 RRAS2--WNT9B(16166)/LINC01974(6846) BS_VVFBW0YH ARRIBA frameshift 3 1 high [],translocation RRAS2 NA WNT9B LINC01974 Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VVFBW0YH ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +13:98576745 13:72059447 STK24--RPS10P21(145269)/SNORD37(394455) BS_VVFBW0YH ARRIBA frameshift 3 0 medium [],inversion STK24 NA RPS10P21 SNORD37 Kinase NA NA NA NA +1:114947320 1:114923449 SYCP1--SYCP1 BS_VVFBW0YH ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_VVFBW0YH ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VVTHDRBD ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VVTHDRBD ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:244457569 1:95412141 CATSPERE--AL445218.1(31141)/LINC01761(62596) BS_VVTHDRBD ARRIBA other 7 0 high [],duplication CATSPERE NA AL445218.1 LINC01761 NA NA NA NA NA +1:245500541 1:39897743 KIF26B--MYCL BS_VVTHDRBD ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:205.25Mb]],inversion KIF26B NA MYCL NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +11:24983293 11:35306242 LUZP2--SLC1A2 BS_VVTHDRBD ARRIBA in-frame 24 1 high [INTRACHROMOSOMAL[chr11:10.17Mb]],inversion LUZP2 NA SLC1A2 NA NA NA NA NA NA +11:24983293 11:35306242 LUZP2--SLC1A2 BS_VVTHDRBD STARFUSION in-frame 25 1 NA [INTRACHROMOSOMAL[chr11:10.17Mb]] LUZP2 NA SLC1A2 NA NA NA NA NA NA +1:51760780 1:226222131 OSBPL9--AL592045.1(32910)/MIXL1(1487) BS_VVTHDRBD ARRIBA frameshift 2 0 medium [],deletion OSBPL9 NA AL592045.1 MIXL1 NA NA NA Oncogene, TranscriptionFactor NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VVTHDRBD ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:35312198 11:25050038 SLC1A2--LUZP2 BS_VVTHDRBD ARRIBA in-frame 110 3 high [INTRACHROMOSOMAL[chr11:10.17Mb]],inversion SLC1A2 NA LUZP2 NA NA NA NA NA NA +11:35312198 11:25077329 SLC1A2--LUZP2 BS_VVTHDRBD ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr11:10.17Mb]],inversion SLC1A2 NA LUZP2 NA NA NA NA NA NA +11:35312198 11:25050038 SLC1A2--LUZP2 BS_VVTHDRBD STARFUSION in-frame 118 3 NA [INTRACHROMOSOMAL[chr11:10.17Mb]] SLC1A2 NA LUZP2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VW85Q4XJ ARRIBA other 68 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VW85Q4XJ ARRIBA other 68 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:91102340 5:90781430 ADGRV1--ADGRV1 BS_VW85Q4XJ ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +17:7656768 14:49862815 ATP1B2--RN7SL2 BS_VW85Q4XJ STARFUSION other 8 6 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_VW85Q4XJ ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +3:178748404 3:178921943 KCNMB2-AS1--KCNMB2-AS1(61538)/ZMAT3(95280) BS_VW85Q4XJ ARRIBA other 1 1 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138867975 7:140781693 KIAA1549--BRAF BS_VW85Q4XJ ARRIBA in-frame 15 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138867975 7:140781693 KIAA1549--BRAF BS_VW85Q4XJ STARFUSION in-frame 15 1 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_VW85Q4XJ ARRIBA other 68 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_VXEFKW5P ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_VXEFKW5P ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_VXEFKW5P ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_VXEFKW5P ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +10:21369967 10:21172477 AL158209.1--NEBL BS_VXEFKW5P STARFUSION other 31 6 NA [INTRACHROMOSOMAL[chr10:0.17Mb]] AL158209.1 NA NEBL NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_VXEFKW5P ARRIBA other 12 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_VXEFKW5P ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:1772961 12:1371833 ADIPOR2--ERC1 BS_VXHWZJDC ARRIBA frameshift 1 0 low [ChimerSeq,INTRACHROMOSOMAL[chr12:0.19Mb]],duplication ADIPOR2 NA ERC1 NA NA CosmicCensus, Oncogene NA NA TCGAFusion +22:19291600 22:22295965 CLTCL1--AC245060.2(1171)/AC245060.4(7259) BS_VXHWZJDC ARRIBA frameshift 2 0 medium [],duplication CLTCL1 NA AC245060.2 AC245060.4 CosmicCensus, Oncogene NA NA NA NA +17:17078076 17:18889822 MPRIP--PRPSAP2 BS_VXHWZJDC ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr17:1.62Mb]],deletion MPRIP NA PRPSAP2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_W18SF91A ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_W18SF91A ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_W18SF91A ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_W18SF91A ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_W18SF91A ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_W18SF91A ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211107377 AL590132.1--KCNH1 BS_W18SF91A ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_W18SF91A ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_W18SF91A ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_W18SF91A ARRIBA other 24 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_W18SF91A ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_W18SF91A ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +2:124798320 2:124772799 CNTNAP5--CNTNAP5 BS_W18SF91A ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.89Mb]],duplication/non-canonical_splicing CNTNAP5 NA CNTNAP5 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_W18SF91A ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +17:78494036 17:78496032 DNAH17--DNAH17 BS_W18SF91A ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.15Mb]],duplication/non-canonical_splicing DNAH17 NA DNAH17 NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_W18SF91A ARRIBA in-frame 13 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_W18SF91A ARRIBA in-frame 27 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +9:98385640 9:98406141 GABBR2--GABBR2 BS_W18SF91A ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.42Mb]],duplication/non-canonical_splicing GABBR2 NA GABBR2 NA NA NA NA NA NA +7:43501322 7:43492075 HECW1--HECW1 BS_W18SF91A ARRIBA frameshift 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_W18SF91A ARRIBA other 8 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_W18SF91A ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_W18SF91A ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_W18SF91A ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_W18SF91A ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211107377 KCNH1--AL590132.1 BS_W18SF91A ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_W18SF91A ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_W18SF91A ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_W18SF91A ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_W18SF91A ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +14:46920012 14:47035304 MDGA2--MDGA2 BS_W18SF91A ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_W18SF91A ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +11:16794488 11:16803295 PLEKHA7--PLEKHA7 BS_W18SF91A ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.24Mb]],duplication/non-canonical_splicing PLEKHA7 NA PLEKHA7 NA NA NA NA NA NA +7:56011806 7:55773657 PSPH--PSPHP1(369)/RNU6-1126P(15711) BS_W18SF91A ARRIBA frameshift 2 0 low [],inversion PSPH NA PSPHP1 RNU6-1126P NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_W18SF91A ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_W18SF91A ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:66690316 1:66677004 SGIP1--SGIP1 BS_W18SF91A ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing SGIP1 NA SGIP1 NA NA NA NA NA NA +7:26726882 7:26844137 SKAP2--SKAP2 BS_W18SF91A ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.33Mb]],duplication/non-canonical_splicing SKAP2 NA SKAP2 NA NA NA NA NA NA +2:161894825 2:161872293 SLC4A10--SLC4A10 BS_W18SF91A ARRIBA frameshift 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +12:21292164 12:21306988 SLCO1A2--SLCO1A2 BS_W18SF91A ARRIBA in-frame 17 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA +8:50553179 8:50502778 SNTG1--SNTG1 BS_W18SF91A ARRIBA in-frame 4 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_W18SF91A ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_W18SF91A ARRIBA other 6 0 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +X:146955175 X:146916390 Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_W18SF91A ARRIBA other 16 0 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA +X:146955175 X:146916390 Z99497.1--CXorf51A(101664)/Z99497.1(38685) BS_W18SF91A ARRIBA other 7 0 medium [],duplication Z99497.1 NA CXorf51A Z99497.1 NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_W311713R ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_W311713R ARRIBA frameshift 16 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +11:123606798 11:93185814 GRAMD1B--SLC36A4 BS_W311713R ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr11:30.16Mb]],inversion GRAMD1B NA SLC36A4 NA NA NA NA NA NA +1:181037 7:101031120 AL627309.5(7175)/FO538757.2(1659)--MUC17 BS_W36RZSFA ARRIBA other 3 0 medium [],translocation AL627309.5 FO538757.2 MUC17 NA NA Oncogene NA NA NA +7:79453020 7:80494647 MAGI2--GNAT3 BS_W36RZSFA ARRIBA in-frame 9 0 high [INTRACHROMOSOMAL[chr7:1.01Mb]],duplication MAGI2 NA GNAT3 NA NA NA NA NA NA +7:79453020 7:80478998 MAGI2--GNAT3 BS_W36RZSFA ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:1.01Mb]],duplication MAGI2 NA GNAT3 NA NA NA NA NA NA +X:24575130 X:24619084 PCYT1B--PCYT1B BS_W36RZSFA ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.11Mb]],duplication/non-canonical_splicing PCYT1B NA PCYT1B NA NA NA NA NA NA +9:134326659 1:22889574 RXRA--EPHB2 BS_W36RZSFA ARRIBA frameshift 24 1 high [INTERCHROMOSOMAL[chr9--chr1]],translocation/5'-5' RXRA NA EPHB2 NA TranscriptionFactor Kinase, TumorSuppressorGene, Kinase NA NA NA +5:1075997 5:20581109 SLC12A7--CDH18(5236)/LINC02241(30731) BS_W36RZSFA ARRIBA frameshift 3 0 low [],duplication SLC12A7 NA CDH18 LINC02241 NA NA NA NA NA +4:103656194 4:103658403 TACR3--TACR3 BS_W36RZSFA ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.13Mb]],duplication/non-canonical_splicing TACR3 NA TACR3 NA NA NA NA NA NA +12:71921454 12:78027986 TBC1D15--NAV3 BS_W36RZSFA ARRIBA frameshift 13 1 high [INTRACHROMOSOMAL[chr12:5.40Mb]],deletion TBC1D15 NA NAV3 NA NA NA NA NA NA +10:26823192 20:10603326 ABI1--SLX4IP BS_W3R88RFP ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr10--chr20]],translocation/5'-5' ABI1 NA SLX4IP NA CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_W3R88RFP ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_W3R88RFP ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:27208246 20:11313160 ACBD5--AL049649.1(11635)/RPS11P1(32223) BS_W3R88RFP ARRIBA frameshift 2 1 high [],translocation ACBD5 NA AL049649.1 RPS11P1 NA NA NA NA NA +10:27208246 20:11456425 ACBD5--RPS11P1(110570)/AL109837.2(79981) BS_W3R88RFP ARRIBA frameshift 3 0 high [],translocation ACBD5 NA RPS11P1 AL109837.2 NA NA NA NA NA +10:27208246 20:11498485 ACBD5--RPS11P1(152630)/AL109837.2(37921) BS_W3R88RFP ARRIBA frameshift 3 0 high [],translocation ACBD5 NA RPS11P1 AL109837.2 NA NA NA NA NA +9:37955883 9:15466859 AL138752.2--PSIP1 BS_W3R88RFP ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr9:22.08Mb]],deletion AL138752.2 NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA +9:37953831 9:15468273 AL138752.2--PSIP1 BS_W3R88RFP ARRIBA other 6 1 medium [INTRACHROMOSOMAL[chr9:22.08Mb]],deletion AL138752.2 NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA +9:37955883 9:15465580 AL138752.2--PSIP1 BS_W3R88RFP ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr9:22.08Mb]],deletion AL138752.2 NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA +9:33135189 20:11842386 B4GALT1--LINC00687 BS_W3R88RFP ARRIBA frameshift 35 0 high [INTERCHROMOSOMAL[chr9--chr20]],translocation/5'-5' B4GALT1 NA LINC00687 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_W3R88RFP ARRIBA other 4 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_W3R88RFP ARRIBA other 16 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:37955883 9:15466859 SHB--PSIP1 BS_W3R88RFP ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr9:22.41Mb]],deletion SHB NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA +9:37953831 9:15468273 SHB--PSIP1 BS_W3R88RFP ARRIBA other 6 1 medium [INTRACHROMOSOMAL[chr9:22.41Mb]],deletion SHB NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA +9:37955883 9:15465580 SHB--PSIP1 BS_W3R88RFP ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr9:22.41Mb]],deletion SHB NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA +4:26919634 4:37228583 STIM2--AL136537.1(103159)/MIR4801(13327) BS_W3R88RFP ARRIBA frameshift 3 0 high [],deletion STIM2 NA AL136537.1 MIR4801 NA NA NA NA NA +4:26919634 4:37325936 STIM2--NWD2 BS_W3R88RFP ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr4:10.22Mb]],deletion STIM2 NA NWD2 NA NA NA NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_W41S7B55 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46474501 20:46504740 MKRN7P--ZNF334 BS_W41S7B55 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA +4:26769852 4:26720081 TBC1D19(14501)/STIM2(87826)--TBC1D19 BS_W41S7B55 ARRIBA other 1 0 low [],duplication TBC1D19 STIM2 TBC1D19 NA NA NA NA NA NA +5:139685432 5:139680364 AC008667.1--CXXC5 BS_W4DB5RP1 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:+:[763]],duplication AC008667.1 NA CXXC5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +5:139685432 5:139665580 AC008667.1--CXXC5 BS_W4DB5RP1 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.00Mb],LOCAL_REARRANGEMENT:+:[763]],duplication AC008667.1 NA CXXC5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_W4DB5RP1 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_W4DB5RP1 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:80684538 16:64708938 CDYL2--AC092131.1(108691)/AC009101.2(26987) BS_W4DB5RP1 ARRIBA frameshift 2 0 high [],inversion CDYL2 NA AC092131.1 AC009101.2 NA NA NA NA NA +20:47172867 17:67532802 EYA2--PITPNC1 BS_W4DB5RP1 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr20--chr17]],translocation EYA2 NA PITPNC1 NA NA NA NA NA NA +3:13282711 10:82358739 IQSEC1(209594)/NUP210(33524)--NRG3 BS_W4DB5RP1 ARRIBA other 4 0 medium [],translocation IQSEC1 NUP210 NRG3 NA NA NA NA NA NA +4:6824684 4:7396288 KIAA0232--SORCS2 BS_W4DB5RP1 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr4:0.31Mb]],deletion KIAA0232 NA SORCS2 NA NA NA NA NA NA +7:114923127 7:115769504 MDFIC--AC093714.1(86886)/AC093714.2(20225) BS_W4DB5RP1 ARRIBA frameshift 2 0 high [],inversion MDFIC NA AC093714.1 AC093714.2 NA NA NA NA NA +7:114923127 7:116910233 MDFIC--CAPZA2 BS_W4DB5RP1 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:1.79Mb]],deletion MDFIC NA CAPZA2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_W4DB5RP1 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_W4HGV6E7 ARRIBA other 71 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_W4HGV6E7 ARRIBA other 71 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:199070153 2:198579708 AC020718.1--AC019330.1 BS_W4HGV6E7 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +2:199071746 2:198579708 AC020718.1--AC019330.1 BS_W4HGV6E7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +10:17139072 10:17174660 AC067747.1(1487)/TRDMT1(3182)--TRDMT1 BS_W4HGV6E7 ARRIBA other 4 0 medium [],duplication AC067747.1 TRDMT1 TRDMT1 NA NA NA NA NA NA +12:27185443 12:27030158 AC092747.1(24050)/STK38L(58525)--MED21 BS_W4HGV6E7 ARRIBA other 1 0 low [],duplication AC092747.1 STK38L MED21 NA NA NA Oncogene, Kinase NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_W4HGV6E7 ARRIBA other 10 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +3:167140689 3:167282495 AC092965.1(74369)/ZBBX(99598)--ZBBX BS_W4HGV6E7 ARRIBA other 4 0 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_W4HGV6E7 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93557472 AC110023.1--AC091078.1 BS_W4HGV6E7 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_W4HGV6E7 ARRIBA in-frame 56 6 high [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +20:46457675 20:46504740 AL031686.1--ZNF334 BS_W4HGV6E7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46496711 20:46504740 AL031686.1--ZNF334 BS_W4HGV6E7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46492682 20:46504740 AL031686.1--ZNF334 BS_W4HGV6E7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46474501 20:46506458 AL031686.1--ZNF334 BS_W4HGV6E7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_W4HGV6E7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +7:33642356 7:33357855 BBS9(36288)/AC008080.1(83625)--BBS9 BS_W4HGV6E7 ARRIBA other 1 0 low [],duplication BBS9 AC008080.1 BBS9 NA NA NA NA NA NA +6:127581282 6:163455279 C6orf58--QKI BS_W4HGV6E7 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr6:35.82Mb]],deletion C6orf58 NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA +15:100544903 15:100565265 CERS3--LINS1 BS_W4HGV6E7 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:-:[14374]],duplication CERS3 NA LINS1 NA NA NA NA NA NA +15:100469378 15:100565265 CERS3--LINS1 BS_W4HGV6E7 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:-:[14374]],duplication CERS3 NA LINS1 NA NA NA NA NA NA +15:100490817 15:100565265 CERS3--LINS1 BS_W4HGV6E7 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:-:[14374]],duplication CERS3 NA LINS1 NA NA NA NA NA NA +15:100521667 15:100565265 CERS3--LINS1 BS_W4HGV6E7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.01Mb],LOCAL_REARRANGEMENT:-:[14374]],duplication CERS3 NA LINS1 NA NA NA NA NA NA +9:97079287 9:97095256 GAS2L1P2--VN1R51P(618)/FAM220CP(26403) BS_W4HGV6E7 ARRIBA other 5 2 high [],duplication GAS2L1P2 NA VN1R51P FAM220CP NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_W4HGV6E7 ARRIBA other 3 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +5:3531753 5:3566558 LINC01019--LINC01019(30464)/IRX1(29496) BS_W4HGV6E7 ARRIBA other 3 1 high [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA +5:3531753 5:3576845 LINC01019--LINC01019(40751)/IRX1(19209) BS_W4HGV6E7 ARRIBA other 4 0 high [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA +8:136537059 8:136529795 LINC02055--AC013546.1 BS_W4HGV6E7 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr8:0.00Mb],LOCAL_REARRANGEMENT:+:[922]],duplication LINC02055 NA AC013546.1 NA NA NA NA NA NA +8:136797370 8:136529795 LINC02055--AC013546.1 BS_W4HGV6E7 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.00Mb],LOCAL_REARRANGEMENT:+:[922]],duplication LINC02055 NA AC013546.1 NA NA NA NA NA NA +14:60019260 14:59997656 LRRC9--LRRC9 BS_W4HGV6E7 ARRIBA frameshift 13 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +1:219218712 1:219210532 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_W4HGV6E7 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +6:135200415 6:163561982 MYB--QKI BS_W4HGV6E7 ARRIBA in-frame 448 65 high [ChimerPub,INTRACHROMOSOMAL[chr6:28.19Mb]],deletion MYB NA QKI NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA +6:135200415 6:163563444 MYB--QKI BS_W4HGV6E7 ARRIBA frameshift 1 10 medium [ChimerPub,INTRACHROMOSOMAL[chr6:28.19Mb]],deletion MYB NA QKI NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA +6:135200415 6:163566721 MYB--QKI BS_W4HGV6E7 ARRIBA frameshift 1 0 low [ChimerPub,INTRACHROMOSOMAL[chr6:28.19Mb]],deletion MYB NA QKI NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA +6:135200415 6:163561982 MYB--QKI BS_W4HGV6E7 STARFUSION in-frame 461 67 NA [ChimerPub,INTRACHROMOSOMAL[chr6:28.19Mb]] MYB NA QKI NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA +10:26193311 10:26173663 MYO3A--MYO3A BS_W4HGV6E7 ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.28Mb]],duplication/non-canonical_splicing MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_W4HGV6E7 ARRIBA frameshift 21 2 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +12:95665810 12:95833084 NTN4--AC090001.1 BS_W4HGV6E7 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:95682707 12:95833084 NTN4--AC090001.1 BS_W4HGV6E7 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:95710441 12:95833084 NTN4--AC090001.1 BS_W4HGV6E7 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +12:95786939 12:95833084 NTN4--AC090001.1 BS_W4HGV6E7 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:-:[4193]],duplication NTN4 NA AC090001.1 NA NA NA NA NA NA +6:162814281 6:135796589 PACRG--LINC00271(80534)/AL133319.1(10559) BS_W4HGV6E7 ARRIBA frameshift 42 11 high [],inversion PACRG NA LINC00271 AL133319.1 TumorSuppressorGene NA NA NA NA +6:162814281 6:135796589 PACRG--LINC00271(80534)/AL133319.1(10559) BS_W4HGV6E7 ARRIBA frameshift 1 5 medium [],inversion PACRG NA LINC00271 AL133319.1 TumorSuppressorGene NA NA NA NA +10:94032252 10:94017339 PLCE1--PIPSL(55799)/PLCE1(13473) BS_W4HGV6E7 ARRIBA frameshift 2 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +6:163535125 6:127578686 QKI--C6orf58 BS_W4HGV6E7 ARRIBA frameshift 24 4 medium [INTRACHROMOSOMAL[chr6:35.82Mb]],duplication QKI NA C6orf58 NA TumorSuppressorGene, CosmicCensus NA NA NA NA +6:163535125 6:127570753 QKI--C6orf58 BS_W4HGV6E7 ARRIBA frameshift 4 4 medium [INTRACHROMOSOMAL[chr6:35.82Mb]],duplication QKI NA C6orf58 NA TumorSuppressorGene, CosmicCensus NA NA NA NA +6:163535125 6:127590087 QKI--C6orf58 BS_W4HGV6E7 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr6:35.82Mb]],duplication QKI NA C6orf58 NA TumorSuppressorGene, CosmicCensus NA NA NA NA +6:163535125 6:127578686 QKI--C6orf58 BS_W4HGV6E7 STARFUSION frameshift 25 4 NA [INTRACHROMOSOMAL[chr6:35.82Mb]] QKI NA C6orf58 NA TumorSuppressorGene, CosmicCensus NA NA NA NA +6:163535125 6:127623288 QKI--C6orf58(31471)/AL592291.1(9670) BS_W4HGV6E7 ARRIBA frameshift 19 3 medium [],duplication QKI NA C6orf58 AL592291.1 TumorSuppressorGene, CosmicCensus NA NA NA NA +6:163535125 6:127623288 QKI--C6orf58(31471)/AL592291.1(9670) BS_W4HGV6E7 ARRIBA frameshift 3 2 medium [],duplication QKI NA C6orf58 AL592291.1 TumorSuppressorGene, CosmicCensus NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_W4HGV6E7 ARRIBA frameshift 29 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_W4HGV6E7 ARRIBA other 71 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16325965 4:16238771 TAPT1-AS1(5825)/ZEB2P1(34721)--TAPT1-AS1 BS_W4HGV6E7 ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +8:93822563 8:93799618 TMEM67(3329)/AC084346.1(11891)--TMEM67 BS_W4HGV6E7 ARRIBA other 5 0 medium [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +3:189808526 3:189737740 TP63--TP63 BS_W4HGV6E7 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.27Mb]],duplication/non-canonical_splicing TP63 NA TP63 NA TumorSuppressorGene, CosmicCensus, TranscriptionFactor TumorSuppressorGene, CosmicCensus, TranscriptionFactor NA NA NA +14:37701526 14:37680151 TTC6--TTC6 BS_W4HGV6E7 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA +2:209939652 2:209933822 UNC80--UNC80 BS_W4HGV6E7 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_W4HGV6E7 ARRIBA frameshift 20 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +19:52406643 19:52369560 ZNF528--ZNF610(1782)/ZNF880(357) BS_W4HGV6E7 ARRIBA frameshift 1 1 high [],duplication ZNF528 NA ZNF610 ZNF880 TranscriptionFactor TranscriptionFactor NA TranscriptionFactor NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_W60RQAKK ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_W60RQAKK ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:226149793 9:43213087 ACBD3--FP325317.1(87182)/BX088702.1(17333833) BS_W60RQAKK ARRIBA frameshift 9 2 medium [],translocation ACBD3 NA FP325317.1 BX088702.1 NA NA NA NA NA +9:66020016 9:66029422 AL136317.2--AL136317.3 BS_W60RQAKK ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr9:0.01Mb],LOCAL_INVERSION:-:+:[8448]],duplication/5'-5' AL136317.2 NA AL136317.3 NA NA NA NA NA NA +1:155438327 1:159199751 ASH1L--CADM3 BS_W60RQAKK ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr1:3.61Mb]],inversion ASH1L NA CADM3 NA TranscriptionFactor TumorSuppressorGene NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_W60RQAKK ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +12:108701124 11:43283493 CORO1C--API5 BS_W60RQAKK ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr12--chr11]],translocation CORO1C NA API5 NA Oncogene NA NA NA NA +12:108701124 11:43283493 CORO1C--HNRNPKP3(14100)/API5(28470) BS_W60RQAKK ARRIBA frameshift 2 0 high [],translocation CORO1C NA HNRNPKP3 API5 Oncogene NA NA NA NA +15:44459200 11:90071696 CTDSPL2--AP004607.5 BS_W60RQAKK ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr15--chr11]],translocation CTDSPL2 NA AP004607.5 NA NA NA NA NA NA +12:50741539 9:37086668 DIP2B--EBLN3P BS_W60RQAKK ARRIBA frameshift 8 1 high [INTERCHROMOSOMAL[chr12--chr9]],translocation DIP2B NA EBLN3P NA NA NA NA NA NA +1:157135951 1:155418035 ETV3--ASH1L BS_W60RQAKK ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:1.56Mb]],inversion/5'-5' ETV3 NA ASH1L NA Oncogene, TranscriptionFactor TranscriptionFactor NA NA NA +1:167776249 1:174225948 MPZL1--RABGAP1L BS_W60RQAKK ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr1:6.37Mb]],inversion/3'-3' MPZL1 NA RABGAP1L NA NA Oncogene NA NA NA +1:162070282 1:173602772 NOS1AP--AL139142.1 BS_W60RQAKK ARRIBA frameshift 8 1 high [INTRACHROMOSOMAL[chr1:11.18Mb]],deletion NOS1AP NA AL139142.1 NA NA NA NA NA NA +11:72069841 11:75983387 NUMA1--UVRAG BS_W60RQAKK ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr11:3.73Mb]],inversion NUMA1 NA UVRAG NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA +11:72080458 11:75983387 NUMA1--UVRAG BS_W60RQAKK ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr11:3.73Mb]],inversion NUMA1 NA UVRAG NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA +13:66631210 11:103639085 PCDH9--DYNC2H1(159222)/AP002989.1(36909) BS_W60RQAKK ARRIBA frameshift 3 0 high [],translocation PCDH9 NA DYNC2H1 AP002989.1 TumorSuppressorGene NA NA NA NA +13:66631210 11:103909819 PCDH9--PDGFD BS_W60RQAKK ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr13--chr11]],translocation PCDH9 NA PDGFD NA TumorSuppressorGene NA NA NA NA +1:174394145 1:155415923 RABGAP1L--ASH1L BS_W60RQAKK ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr1:18.60Mb]],inversion RABGAP1L NA ASH1L NA Oncogene TranscriptionFactor NA NA NA +1:174394145 1:155395553 RABGAP1L--ASH1L BS_W60RQAKK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:18.60Mb]],inversion RABGAP1L NA ASH1L NA Oncogene TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_W60RQAKK ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:166858119 15:18558158 TADA1--AC138701.1(1320397) BS_W60RQAKK ARRIBA frameshift 3 0 medium [],translocation TADA1 NA AC138701.1 NA NA NA NA NA NA +1:165827932 1:174231145 UCK2--RABGAP1L BS_W60RQAKK ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr1:8.25Mb]],deletion UCK2 NA RABGAP1L NA NA Oncogene NA NA NA +1:165827932 1:174241483 UCK2--RABGAP1L BS_W60RQAKK ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:8.25Mb]],deletion UCK2 NA RABGAP1L NA NA Oncogene NA NA NA +12:62355475 12:98515897 USP15--TMPO-AS1 BS_W60RQAKK ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr12:36.10Mb]],inversion USP15 NA TMPO-AS1 NA Oncogene NA NA NA NA +10:31319515 14:85087612 ZEB1-AS1--AL163642.2(88316)/AL357172.1(115237) BS_W60RQAKK ARRIBA other 4 0 medium [],translocation ZEB1-AS1 NA AL163642.2 AL357172.1 NA NA NA NA NA +6:52995910 14:49862664 7SK--RN7SL2 BS_W644VEVE STARFUSION other 6 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +12:989809 12:1655102 AC004803.1--WNT5B(7859)/MIR3649(5213) BS_W644VEVE ARRIBA other 24 0 high [],duplication AC004803.1 NA WNT5B MIR3649 NA NA NA NA NA +12:3319726 12:428769 AC005865.1--CCDC77 BS_W644VEVE ARRIBA other 24 5 high [INTRACHROMOSOMAL[chr12:2.88Mb]],duplication AC005865.1 NA CCDC77 NA NA NA NA NA NA +12:3323452 12:405511 AC005865.1--CCDC77 BS_W644VEVE ARRIBA other 2 8 high [INTRACHROMOSOMAL[chr12:2.88Mb]],duplication AC005865.1 NA CCDC77 NA NA NA NA NA NA +12:3319726 12:405511 AC005865.1--CCDC77 BS_W644VEVE ARRIBA other 1 7 high [INTRACHROMOSOMAL[chr12:2.88Mb]],duplication AC005865.1 NA CCDC77 NA NA NA NA NA NA +12:3323452 12:428769 AC005865.1--CCDC77 BS_W644VEVE ARRIBA other 3 5 high [INTRACHROMOSOMAL[chr12:2.88Mb]],duplication AC005865.1 NA CCDC77 NA NA NA NA NA NA +12:3319726 12:431866 AC005865.1--CCDC77 BS_W644VEVE ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr12:2.88Mb]],duplication AC005865.1 NA CCDC77 NA NA NA NA NA NA +12:3319726 12:428769 AC005865.1--CCDC77 BS_W644VEVE STARFUSION other 24 8 NA [INTRACHROMOSOMAL[chr12:2.88Mb]] AC005865.1 NA CCDC77 NA NA NA NA NA NA +12:3366059 12:4174148 AC005865.2--AC007207.1(56016)/CCND2-AS1(74617) BS_W644VEVE ARRIBA other 6 0 medium [],duplication AC005865.2 NA AC007207.1 CCND2-AS1 NA NA NA Oncogene NA +12:3366059 2:16284761 AC005865.2--AC010745.2(55621)/AC010745.4(31563) BS_W644VEVE ARRIBA other 4 0 medium [],translocation AC005865.2 NA AC010745.2 AC010745.4 NA NA NA NA NA +12:3366059 2:16302290 AC005865.2--AC010745.2(73150)/AC010745.4(14034) BS_W644VEVE ARRIBA other 6 0 medium [],translocation AC005865.2 NA AC010745.2 AC010745.4 NA NA NA NA NA +12:3366059 12:4299860 AC005865.2--CCND2 BS_W644VEVE ARRIBA other 307 2 medium [INTRACHROMOSOMAL[chr12:0.91Mb]],inversion AC005865.2 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA +12:3366059 12:4299860 AC005865.2--CCND2 BS_W644VEVE STARFUSION other 366 2 NA [INTRACHROMOSOMAL[chr12:0.91Mb]] AC005865.2 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA +12:3366059 12:566178 AC005865.2--NINJ2 BS_W644VEVE ARRIBA other 10 0 medium [INTRACHROMOSOMAL[chr12:2.63Mb]],deletion AC005865.2 NA NINJ2 NA NA NA NA NA NA +12:3366254 12:4299860 AC005865.2(132)/LINC02417(1579)--CCND2 BS_W644VEVE ARRIBA other 48 5 medium [],inversion AC005865.2 LINC02417 CCND2 NA NA CosmicCensus, Oncogene NA NA NA +12:4109922 12:3827034 AC007207.1--PARP11 BS_W644VEVE ARRIBA other 25 2 medium [INTRACHROMOSOMAL[chr12:0.24Mb]],inversion/5'-5' AC007207.1 NA PARP11 NA NA NA NA NA NA +12:4123465 12:3830018 AC007207.1(5333)/CCND2-AS1(125300)--PARP11 BS_W644VEVE ARRIBA other 1 1 low [],inversion AC007207.1 CCND2-AS1 PARP11 NA NA NA Oncogene NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_W644VEVE ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_W644VEVE ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:16323156 12:3307818 AC010745.4(3590)/AC010880.1(31100)--AC005865.2 BS_W644VEVE ARRIBA other 5 0 medium [],translocation AC010745.4 AC010880.1 AC005865.2 NA NA NA NA NA NA +2:16323156 12:4110280 AC010745.4(3590)/AC010880.1(31100)--AC007207.1 BS_W644VEVE ARRIBA other 10 0 medium [],translocation AC010745.4 AC010880.1 AC007207.1 NA NA NA NA NA NA +2:16455850 2:15935774 AC010880.1(23148)/AC104623.1(67326)--MYCNUT BS_W644VEVE ARRIBA other 4 0 high [],duplication AC010880.1 AC104623.1 MYCNUT NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_W644VEVE ARRIBA other 4 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +7:105788604 7:104736675 ATXN7L1--LHFPL3 BS_W644VEVE ARRIBA in-frame 5 1 high [INTRACHROMOSOMAL[chr7:0.70Mb]],inversion ATXN7L1 NA LHFPL3 NA NA NA NA NA NA +8:102880058 X:71223692 AZIN1-AS1--GJB1 BS_W644VEVE ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr8--chrX]],translocation AZIN1-AS1 NA GJB1 NA NA NA NA NA NA +1:235480054 1:235741628 B3GALNT2--LYST BS_W644VEVE ARRIBA in-frame 85 16 high [CCLE,INTRACHROMOSOMAL[chr1:0.16Mb]],duplication B3GALNT2 NA LYST NA NA NA NA NA TCGAFusion +1:235480054 1:235741628 B3GALNT2--LYST BS_W644VEVE STARFUSION in-frame 86 16 NA [CCLE,INTRACHROMOSOMAL[chr1:0.16Mb]] B3GALNT2 NA LYST NA NA NA NA NA TCGAFusion +12:549912 12:3323349 B4GALNT3--AC005865.1 BS_W644VEVE ARRIBA frameshift 17 3 medium [INTRACHROMOSOMAL[chr12:2.76Mb]],deletion B4GALNT3 NA AC005865.1 NA NA NA NA NA NA +12:460545 12:3316829 B4GALNT3--AC005865.2 BS_W644VEVE ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr12:2.73Mb]],deletion/5'-5' B4GALNT3 NA AC005865.2 NA NA NA NA NA NA +12:545469 12:3345983 B4GALNT3--AC005865.2 BS_W644VEVE ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr12:2.73Mb]],inversion B4GALNT3 NA AC005865.2 NA NA NA NA NA NA +12:536295 12:3298260 B4GALNT3--AC005865.2 BS_W644VEVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:2.73Mb]],inversion B4GALNT3 NA AC005865.2 NA NA NA NA NA NA +12:460545 2:15997609 B4GALNT3--AC010145.1 BS_W644VEVE ARRIBA frameshift 9 0 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation B4GALNT3 NA AC010145.1 NA NA NA NA NA NA +12:460545 2:15997412 B4GALNT3--AC010145.1 BS_W644VEVE ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr2]],translocation B4GALNT3 NA AC010145.1 NA NA NA NA NA NA +12:460545 2:16284761 B4GALNT3--AC010745.2(55621)/AC010745.4(31563) BS_W644VEVE ARRIBA frameshift 6 0 low [],translocation B4GALNT3 NA AC010745.2 AC010745.4 NA NA NA NA NA +12:460545 2:16305261 B4GALNT3--AC010745.2(76121)/AC010745.4(11063) BS_W644VEVE ARRIBA frameshift 71 8 high [],translocation B4GALNT3 NA AC010745.2 AC010745.4 NA NA NA NA NA +12:460545 2:16316892 B4GALNT3--AC010745.4 BS_W644VEVE ARRIBA frameshift 6 0 low [INTERCHROMOSOMAL[chr12--chr2]],translocation B4GALNT3 NA AC010745.4 NA NA NA NA NA NA +12:460545 2:15870167 B4GALNT3--AC113608.1 BS_W644VEVE ARRIBA frameshift 7 4 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation/5'-5' B4GALNT3 NA AC113608.1 NA NA NA NA NA NA +12:460545 2:15884231 B4GALNT3--AC113608.1(13988)/snoU13(19438) BS_W644VEVE ARRIBA frameshift 9 0 medium [],translocation B4GALNT3 NA AC113608.1 snoU13 NA NA NA NA NA +12:460545 2:16126382 B4GALNT3--AC130710.1(20541)/AC174048.1(22869) BS_W644VEVE ARRIBA frameshift 12 3 medium [],translocation B4GALNT3 NA AC130710.1 AC174048.1 NA NA NA NA NA +12:536295 12:534102 B4GALNT3--B4GALNT3 BS_W644VEVE ARRIBA frameshift 4 1 medium [SELFIE,INTRACHROMOSOMAL[chr12:0.10Mb]],inversion/3'-3' B4GALNT3 NA B4GALNT3 NA NA NA NA NA NA +12:545469 12:4299860 B4GALNT3--CCND2 BS_W644VEVE ARRIBA in-frame 77 25 medium [INTRACHROMOSOMAL[chr12:3.71Mb]],deletion B4GALNT3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA +12:536295 12:4299860 B4GALNT3--CCND2 BS_W644VEVE ARRIBA in-frame 13 4 medium [INTRACHROMOSOMAL[chr12:3.71Mb]],deletion B4GALNT3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA +12:544972 12:4299860 B4GALNT3--CCND2 BS_W644VEVE ARRIBA frameshift 3 9 medium [INTRACHROMOSOMAL[chr12:3.71Mb]],deletion B4GALNT3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA +12:544434 12:4299860 B4GALNT3--CCND2 BS_W644VEVE ARRIBA in-frame 1 5 medium [INTRACHROMOSOMAL[chr12:3.71Mb]],deletion B4GALNT3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA +12:460545 12:4288842 B4GALNT3--CCND2 BS_W644VEVE ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr12:3.71Mb]],deletion B4GALNT3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA +12:460545 12:4299860 B4GALNT3--CCND2 BS_W644VEVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:3.71Mb]],deletion B4GALNT3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA +12:460545 12:4249193 B4GALNT3--CCND2-AS1 BS_W644VEVE ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr12:3.69Mb]],inversion B4GALNT3 NA CCND2-AS1 NA NA Oncogene NA NA NA +12:536295 12:4249193 B4GALNT3--CCND2-AS1 BS_W644VEVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:3.69Mb]],inversion B4GALNT3 NA CCND2-AS1 NA NA Oncogene NA NA NA +12:460545 12:3627706 B4GALNT3--CRACR2A BS_W644VEVE ARRIBA in-frame 15 0 medium [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion B4GALNT3 NA CRACR2A NA NA NA NA NA NA +12:460545 12:3697035 B4GALNT3--CRACR2A BS_W644VEVE ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion B4GALNT3 NA CRACR2A NA NA NA NA NA NA +12:460545 12:3733210 B4GALNT3--CRACR2A BS_W644VEVE ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion B4GALNT3 NA CRACR2A NA NA NA NA NA NA +12:536295 12:3697035 B4GALNT3--CRACR2A BS_W644VEVE ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion B4GALNT3 NA CRACR2A NA NA NA NA NA NA +12:559421 12:3680349 B4GALNT3--CRACR2A BS_W644VEVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion B4GALNT3 NA CRACR2A NA NA NA NA NA NA +12:460545 12:3619372 B4GALNT3--CRACR2A BS_W644VEVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion B4GALNT3 NA CRACR2A NA NA NA NA NA NA +12:536295 12:1180540 B4GALNT3--ERC1 BS_W644VEVE ARRIBA in-frame 34 8 medium [INTRACHROMOSOMAL[chr12:0.43Mb]],deletion B4GALNT3 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA +12:460545 12:1141620 B4GALNT3--ERC1 BS_W644VEVE ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr12:0.43Mb]],deletion B4GALNT3 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA +12:460545 12:1180540 B4GALNT3--ERC1 BS_W644VEVE ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr12:0.43Mb]],deletion B4GALNT3 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA +12:536295 12:1180540 B4GALNT3--ERC1 BS_W644VEVE STARFUSION in-frame 34 8 NA [INTRACHROMOSOMAL[chr12:0.43Mb]] B4GALNT3 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA +12:460545 2:15941097 B4GALNT3--MYCNOS BS_W644VEVE ARRIBA frameshift 21 1 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation B4GALNT3 NA MYCNOS NA NA NA NA NA NA +12:460545 2:15922190 B4GALNT3--MYCNOS BS_W644VEVE ARRIBA frameshift 4 1 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation B4GALNT3 NA MYCNOS NA NA NA NA NA NA +12:536295 2:15941097 B4GALNT3--MYCNOS BS_W644VEVE ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation B4GALNT3 NA MYCNOS NA NA NA NA NA NA +12:460545 2:15921122 B4GALNT3--MYCNOS BS_W644VEVE ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr2]],translocation B4GALNT3 NA MYCNOS NA NA NA NA NA NA +12:460545 2:15941097 B4GALNT3--MYCNOS BS_W644VEVE STARFUSION other 21 1 NA [INTERCHROMOSOMAL[chr12--chr2]] B4GALNT3 NA MYCNOS NA NA NA NA NA NA +12:460545 12:566178 B4GALNT3--NINJ2 BS_W644VEVE ARRIBA frameshift 7 0 medium [CCLE,INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[787]],inversion B4GALNT3 NA NINJ2 NA NA NA NA NA NA +12:545469 12:566178 B4GALNT3--NINJ2 BS_W644VEVE ARRIBA in-frame 1 0 low [CCLE,INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[787]],inversion B4GALNT3 NA NINJ2 NA NA NA NA NA NA +12:551031 12:566178 B4GALNT3--NINJ2 BS_W644VEVE ARRIBA in-frame 1 0 low [CCLE,INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[787]],inversion B4GALNT3 NA NINJ2 NA NA NA NA NA NA +12:532774 12:3277101 B4GALNT3--TSPAN9 BS_W644VEVE ARRIBA other 31 16 medium [INTRACHROMOSOMAL[chr12:2.51Mb]],inversion/3'-3' B4GALNT3 NA TSPAN9 NA NA NA NA NA NA +12:548297 12:3278421 B4GALNT3--TSPAN9 BS_W644VEVE ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr12:2.51Mb]],deletion B4GALNT3 NA TSPAN9 NA NA NA NA NA NA +12:460545 12:3281198 B4GALNT3--TSPAN9 BS_W644VEVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:2.51Mb]],deletion B4GALNT3 NA TSPAN9 NA NA NA NA NA NA +12:460545 12:1646803 B4GALNT3--WNT5B BS_W644VEVE ARRIBA frameshift 11 0 medium [INTRACHROMOSOMAL[chr12:0.97Mb]],inversion/3'-3' B4GALNT3 NA WNT5B NA NA NA NA NA NA +12:2457706 12:3317319 CACNA1C--AC005865.2 BS_W644VEVE ARRIBA frameshift 14 0 high [INTRACHROMOSOMAL[chr12:0.60Mb]],inversion CACNA1C NA AC005865.2 NA NA NA NA NA NA +12:2457706 12:3323512 CACNA1C--AC005865.2 BS_W644VEVE ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr12:0.60Mb]],inversion CACNA1C NA AC005865.2 NA NA NA NA NA NA +12:2457706 12:3307476 CACNA1C--AC005865.2 BS_W644VEVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.60Mb]],inversion CACNA1C NA AC005865.2 NA NA NA NA NA NA +12:2457706 12:3307818 CACNA1C--AC005865.2 BS_W644VEVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:0.60Mb]],inversion CACNA1C NA AC005865.2 NA NA NA NA NA NA +12:2437460 12:3259109 CACNA1C--TSPAN9 BS_W644VEVE ARRIBA other 19 4 medium [INTRACHROMOSOMAL[chr12:0.38Mb]],inversion/3'-3' CACNA1C NA TSPAN9 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_W644VEVE ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_W644VEVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_W644VEVE ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_W644VEVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +12:4278919 2:16011173 CCND2--AC010145.1 BS_W644VEVE ARRIBA frameshift 11 0 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation/5'-5' CCND2 NA AC010145.1 NA CosmicCensus, Oncogene NA NA NA NA +12:4288990 2:16221211 CCND2--AC010745.1(16985)/AC010745.2(2836) BS_W644VEVE ARRIBA frameshift 17 1 medium [],translocation CCND2 NA AC010745.1 AC010745.2 CosmicCensus, Oncogene NA NA NA NA +12:4300052 2:16392253 CCND2--AC010880.1 BS_W644VEVE ARRIBA frameshift 45 2 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation CCND2 NA AC010880.1 NA CosmicCensus, Oncogene NA NA NA NA +12:4278919 2:16392253 CCND2--AC010880.1 BS_W644VEVE ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation CCND2 NA AC010880.1 NA CosmicCensus, Oncogene NA NA NA NA +12:4288990 2:16392253 CCND2--AC010880.1 BS_W644VEVE ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr2]],translocation CCND2 NA AC010880.1 NA CosmicCensus, Oncogene NA NA NA NA +12:4288990 2:15884231 CCND2--AC113608.1(13988)/snoU13(19438) BS_W644VEVE ARRIBA frameshift 6 0 medium [],translocation CCND2 NA AC113608.1 snoU13 CosmicCensus, Oncogene NA NA NA NA +12:4278919 12:534102 CCND2--B4GALNT3 BS_W644VEVE ARRIBA frameshift 14 1 medium [INTRACHROMOSOMAL[chr12:3.71Mb]],inversion/3'-3' CCND2 NA B4GALNT3 NA CosmicCensus, Oncogene NA NA NA NA +12:4278919 12:557608 CCND2--B4GALNT3 BS_W644VEVE ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr12:3.71Mb]],duplication CCND2 NA B4GALNT3 NA CosmicCensus, Oncogene NA NA NA NA +12:4276220 12:535166 CCND2--B4GALNT3 BS_W644VEVE ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr12:3.71Mb]],duplication CCND2 NA B4GALNT3 NA CosmicCensus, Oncogene NA NA NA NA +12:4278919 12:535166 CCND2--B4GALNT3 BS_W644VEVE ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:3.71Mb]],duplication CCND2 NA B4GALNT3 NA CosmicCensus, Oncogene NA NA NA NA +12:4278919 12:3713317 CCND2--CRACR2A BS_W644VEVE ARRIBA frameshift 4 2 medium [INTRACHROMOSOMAL[chr12:0.51Mb]],inversion CCND2 NA CRACR2A NA CosmicCensus, Oncogene NA NA NA NA +12:4288990 12:3713317 CCND2--CRACR2A BS_W644VEVE ARRIBA frameshift 2 3 medium [INTRACHROMOSOMAL[chr12:0.51Mb]],inversion CCND2 NA CRACR2A NA CosmicCensus, Oncogene NA NA NA NA +12:4288990 12:3659654 CCND2--CRACR2A BS_W644VEVE ARRIBA frameshift 1 3 medium [INTRACHROMOSOMAL[chr12:0.51Mb]],inversion CCND2 NA CRACR2A NA CosmicCensus, Oncogene NA NA NA NA +12:4276220 12:3713317 CCND2--CRACR2A BS_W644VEVE ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr12:0.51Mb]],inversion CCND2 NA CRACR2A NA CosmicCensus, Oncogene NA NA NA NA +12:4288990 12:3641838 CCND2--CRACR2A BS_W644VEVE ARRIBA in-frame 1 2 medium [INTRACHROMOSOMAL[chr12:0.51Mb]],inversion CCND2 NA CRACR2A NA CosmicCensus, Oncogene NA NA NA NA +12:4278919 12:3638454 CCND2--CRACR2A BS_W644VEVE ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr12:0.51Mb]],inversion CCND2 NA CRACR2A NA CosmicCensus, Oncogene NA NA NA NA +12:4278919 2:15941097 CCND2--MYCNOS BS_W644VEVE ARRIBA frameshift 43 4 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation CCND2 NA MYCNOS NA CosmicCensus, Oncogene NA NA NA NA +12:4288990 2:15941097 CCND2--MYCNOS BS_W644VEVE ARRIBA frameshift 1 4 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation CCND2 NA MYCNOS NA CosmicCensus, Oncogene NA NA NA NA +12:4278919 2:15921122 CCND2--MYCNOS BS_W644VEVE ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr12--chr2]],translocation CCND2 NA MYCNOS NA CosmicCensus, Oncogene NA NA NA NA +12:4274235 2:15921122 CCND2--MYCNOS BS_W644VEVE ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr2]],translocation CCND2 NA MYCNOS NA CosmicCensus, Oncogene NA NA NA NA +12:4304501 12:576711 CCND2--NINJ2 BS_W644VEVE ARRIBA other 539 234 high [INTRACHROMOSOMAL[chr12:3.61Mb]],inversion CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA +12:4288990 12:566178 CCND2--NINJ2 BS_W644VEVE ARRIBA in-frame 96 16 medium [INTRACHROMOSOMAL[chr12:3.61Mb]],inversion CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA +12:4286434 12:566178 CCND2--NINJ2 BS_W644VEVE ARRIBA other 11 0 medium [INTRACHROMOSOMAL[chr12:3.61Mb]],deletion/3'-3' CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA +12:4276220 12:566178 CCND2--NINJ2 BS_W644VEVE ARRIBA in-frame 5 2 medium [INTRACHROMOSOMAL[chr12:3.61Mb]],inversion CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA +12:4278919 12:566178 CCND2--NINJ2 BS_W644VEVE ARRIBA frameshift 2 3 medium [INTRACHROMOSOMAL[chr12:3.61Mb]],inversion CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA +12:4288990 12:564681 CCND2--NINJ2 BS_W644VEVE ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr12:3.61Mb]],inversion CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA +12:4288990 12:565980 CCND2--NINJ2 BS_W644VEVE ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr12:3.61Mb]],inversion CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA +12:4300052 12:566178 CCND2--NINJ2 BS_W644VEVE STARFUSION other 982 135 NA [INTRACHROMOSOMAL[chr12:3.61Mb]] CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA +12:4275296 12:3568706 CCND2--PRMT8 BS_W644VEVE ARRIBA other 22 2 high [INTRACHROMOSOMAL[chr12:0.68Mb]],inversion/3'-3' CCND2 NA PRMT8 NA CosmicCensus, Oncogene NA NA NA NA +12:4278919 2:15970908 CCND2--RN7SL104P(19927)/AC010145.1(26141) BS_W644VEVE ARRIBA frameshift 16 3 medium [],translocation CCND2 NA RN7SL104P AC010145.1 CosmicCensus, Oncogene NA NA NA NA +12:4278919 12:3278421 CCND2--TSPAN9 BS_W644VEVE ARRIBA frameshift 11 0 medium [INTRACHROMOSOMAL[chr12:0.99Mb]],duplication CCND2 NA TSPAN9 NA CosmicCensus, Oncogene NA NA NA NA +12:4288990 12:3278421 CCND2--TSPAN9 BS_W644VEVE ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr12:0.99Mb]],duplication CCND2 NA TSPAN9 NA CosmicCensus, Oncogene NA NA NA NA +12:4300052 12:813642 CCND2--WNK1 BS_W644VEVE ARRIBA frameshift 4 5 medium [INTRACHROMOSOMAL[chr12:3.36Mb]],duplication CCND2 NA WNK1 NA CosmicCensus, Oncogene Kinase, Kinase NA NA NA +12:4278919 12:1631298 CCND2--WNT5B BS_W644VEVE ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr12:2.63Mb]],duplication CCND2 NA WNT5B NA CosmicCensus, Oncogene NA NA NA NA +12:4276220 12:1631298 CCND2--WNT5B BS_W644VEVE ARRIBA in-frame 4 0 low [INTRACHROMOSOMAL[chr12:2.63Mb]],duplication CCND2 NA WNT5B NA CosmicCensus, Oncogene NA NA NA NA +12:4288990 12:1617028 CCND2--WNT5B BS_W644VEVE ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr12:2.63Mb]],inversion/3'-3' CCND2 NA WNT5B NA CosmicCensus, Oncogene NA NA NA NA +12:4288990 12:1645794 CCND2--WNT5B BS_W644VEVE ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:2.63Mb]],duplication CCND2 NA WNT5B NA CosmicCensus, Oncogene NA NA NA NA +12:4288990 12:1631298 CCND2--WNT5B BS_W644VEVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:2.63Mb]],duplication CCND2 NA WNT5B NA CosmicCensus, Oncogene NA NA NA NA +12:4263845 12:3557951 CCND2-AS1--PRMT8 BS_W644VEVE ARRIBA other 23 4 medium [INTRACHROMOSOMAL[chr12:0.65Mb]],inversion CCND2-AS1 NA PRMT8 NA Oncogene NA NA NA NA +12:4276059 12:3568706 CCND2-AS1--PRMT8 BS_W644VEVE ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr12:0.65Mb]],inversion CCND2-AS1 NA PRMT8 NA Oncogene NA NA NA NA +12:4275022 12:3568706 CCND2-AS2--PRMT8 BS_W644VEVE ARRIBA other 20 0 high [INTRACHROMOSOMAL[chr12:0.66Mb]],inversion CCND2-AS2 NA PRMT8 NA NA NA NA NA NA +12:4275022 12:3569477 CCND2-AS2--PRMT8 BS_W644VEVE ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:0.66Mb]],inversion CCND2-AS2 NA PRMT8 NA NA NA NA NA NA +12:4275022 12:3568706 CCND2-AS2--PRMT8 BS_W644VEVE STARFUSION other 23 0 NA [INTRACHROMOSOMAL[chr12:0.66Mb]] CCND2-AS2 NA PRMT8 NA NA NA NA NA NA +12:3678915 2:16452202 CRACR2A--AC010880.1(19500)/AC104623.1(70974) BS_W644VEVE ARRIBA frameshift 4 1 medium [],translocation CRACR2A NA AC010880.1 AC104623.1 NA NA NA NA NA +12:3673446 2:16169950 CRACR2A--AC174048.1(20556)/SNORA40(29253) BS_W644VEVE ARRIBA frameshift 8 0 medium [],translocation CRACR2A NA AC174048.1 SNORA40 NA NA NA NA NA +12:3713237 12:535166 CRACR2A--B4GALNT3 BS_W644VEVE ARRIBA other 6 2 medium [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion CRACR2A NA B4GALNT3 NA NA NA NA NA NA +12:3696772 12:558016 CRACR2A--B4GALNT3 BS_W644VEVE ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion CRACR2A NA B4GALNT3 NA NA NA NA NA NA +12:3654212 12:559295 CRACR2A--B4GALNT3 BS_W644VEVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:3.04Mb]],inversion CRACR2A NA B4GALNT3 NA NA NA NA NA NA +12:3713237 12:433644 CRACR2A--CCDC77 BS_W644VEVE ARRIBA other 7 1 medium [INTRACHROMOSOMAL[chr12:3.16Mb]],deletion/5'-5' CRACR2A NA CCDC77 NA NA NA NA NA NA +3:128398611 12:4299858 EEFSEC--CCND2 BS_W644VEVE ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr3--chr12]],translocation EEFSEC NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA +12:1190052 12:3909884 ERC1--AC005842.1 BS_W644VEVE ARRIBA frameshift 6 2 high [INTRACHROMOSOMAL[chr12:2.38Mb]],deletion ERC1 NA AC005842.1 NA CosmicCensus, Oncogene NA NA NA NA +12:1190052 12:3875131 ERC1--AC005842.1 BS_W644VEVE ARRIBA frameshift 4 2 high [INTRACHROMOSOMAL[chr12:2.38Mb]],inversion/3'-3' ERC1 NA AC005842.1 NA CosmicCensus, Oncogene NA NA NA NA +12:1028572 12:3909884 ERC1--AC005842.1 BS_W644VEVE ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:2.38Mb]],deletion ERC1 NA AC005842.1 NA CosmicCensus, Oncogene NA NA NA NA +12:1028572 12:4123292 ERC1--AC007207.1(5160)/CCND2-AS1(125473) BS_W644VEVE ARRIBA frameshift 3 0 medium [],deletion ERC1 NA AC007207.1 CCND2-AS1 CosmicCensus, Oncogene NA NA Oncogene NA +12:1183337 2:16455075 ERC1--AC010880.1(22373)/AC104623.1(68101) BS_W644VEVE ARRIBA frameshift 16 3 medium [],translocation ERC1 NA AC010880.1 AC104623.1 CosmicCensus, Oncogene NA NA NA NA +12:1004720 2:16094380 ERC1--AC130710.1 BS_W644VEVE ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation ERC1 NA AC130710.1 NA CosmicCensus, Oncogene NA NA NA NA +12:998482 2:16085483 ERC1--AC130710.1 BS_W644VEVE ARRIBA other 4 1 low [INTERCHROMOSOMAL[chr12--chr2]],translocation ERC1 NA AC130710.1 NA CosmicCensus, Oncogene NA NA NA NA +12:1218235 12:2482126 ERC1--CACNA1C BS_W644VEVE ARRIBA other 106 26 high [INTRACHROMOSOMAL[chr12:0.47Mb]],inversion/3'-3' ERC1 NA CACNA1C NA CosmicCensus, Oncogene NA NA NA NA +12:1141787 12:2448976 ERC1--CACNA1C BS_W644VEVE ARRIBA in-frame 11 1 high [INTRACHROMOSOMAL[chr12:0.47Mb]],deletion ERC1 NA CACNA1C NA CosmicCensus, Oncogene NA NA NA NA +12:991322 12:433644 ERC1--CCDC77 BS_W644VEVE ARRIBA other 2 0 medium [CCLE,INTRACHROMOSOMAL[chr12:0.55Mb]],inversion/3'-3' ERC1 NA CCDC77 NA CosmicCensus, Oncogene NA NA NA NA +12:998482 12:4299860 ERC1--CCND2 BS_W644VEVE ARRIBA other 110 22 medium [INTRACHROMOSOMAL[chr12:2.78Mb]],deletion ERC1 NA CCND2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +12:1176122 12:698443 ERC1--LINC02455(14316)/WNK1(54150) BS_W644VEVE ARRIBA other 8 3 medium [],deletion ERC1 NA LINC02455 WNK1 CosmicCensus, Oncogene NA NA Kinase, Kinase NA +12:1566752 12:2457567 FBXL14--CACNA1C BS_W644VEVE ARRIBA in-frame 84 19 high [INTRACHROMOSOMAL[chr12:0.38Mb]],inversion FBXL14 NA CACNA1C NA NA NA NA NA NA +12:1592915 12:2457567 FBXL14--CACNA1C BS_W644VEVE ARRIBA frameshift 31 7 medium [INTRACHROMOSOMAL[chr12:0.38Mb]],inversion FBXL14 NA CACNA1C NA NA NA NA NA NA +12:1592873 12:2457567 FBXL14--CACNA1C BS_W644VEVE ARRIBA frameshift 20 10 medium [INTRACHROMOSOMAL[chr12:0.38Mb]],inversion FBXL14 NA CACNA1C NA NA NA NA NA NA +12:1566752 12:2457567 FBXL14--CACNA1C BS_W644VEVE STARFUSION in-frame 87 17 NA [INTRACHROMOSOMAL[chr12:0.38Mb]] FBXL14 NA CACNA1C NA NA NA NA NA NA +12:1592868 12:2457567 FBXL14--CACNA1C BS_W644VEVE STARFUSION other 36 17 NA [INTRACHROMOSOMAL[chr12:0.38Mb]] FBXL14 NA CACNA1C NA NA NA NA NA NA +12:1592915 12:2457567 FBXL14--CACNA1C BS_W644VEVE STARFUSION frameshift 32 17 NA [INTRACHROMOSOMAL[chr12:0.38Mb]] FBXL14 NA CACNA1C NA NA NA NA NA NA +12:1592873 12:2457567 FBXL14--CACNA1C BS_W644VEVE STARFUSION frameshift 20 17 NA [INTRACHROMOSOMAL[chr12:0.38Mb]] FBXL14 NA CACNA1C NA NA NA NA NA NA +12:1592915 12:3278421 FBXL14--TSPAN9 BS_W644VEVE ARRIBA in-frame 170 23 high [INTRACHROMOSOMAL[chr12:1.48Mb]],inversion FBXL14 NA TSPAN9 NA NA NA NA NA NA +12:1592873 12:3278421 FBXL14--TSPAN9 BS_W644VEVE ARRIBA in-frame 65 31 medium [INTRACHROMOSOMAL[chr12:1.48Mb]],inversion FBXL14 NA TSPAN9 NA NA NA NA NA NA +12:1592915 12:3278992 FBXL14--TSPAN9 BS_W644VEVE ARRIBA in-frame 1 4 medium [INTRACHROMOSOMAL[chr12:1.48Mb]],inversion FBXL14 NA TSPAN9 NA NA NA NA NA NA +12:1592915 12:3280382 FBXL14--TSPAN9 BS_W644VEVE ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:1.48Mb]],inversion FBXL14 NA TSPAN9 NA NA NA NA NA NA +12:1592915 12:3278421 FBXL14--TSPAN9 BS_W644VEVE STARFUSION in-frame 188 41 NA [INTRACHROMOSOMAL[chr12:1.48Mb]] FBXL14 NA TSPAN9 NA NA NA NA NA NA +12:1592873 12:3278421 FBXL14--TSPAN9 BS_W644VEVE STARFUSION in-frame 68 41 NA [INTRACHROMOSOMAL[chr12:1.48Mb]] FBXL14 NA TSPAN9 NA NA NA NA NA NA +12:1592868 12:3278421 FBXL14--TSPAN9 BS_W644VEVE STARFUSION other 64 41 NA [INTRACHROMOSOMAL[chr12:1.48Mb]] FBXL14 NA TSPAN9 NA NA NA NA NA NA +8:11809850 8:57150758 FDFT1--LINC01606 BS_W644VEVE ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr8:45.30Mb]],inversion/3'-3' FDFT1 NA LINC01606 NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_W644VEVE ARRIBA other 2 1 low [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +1:21887938 3:173246968 HSPG2--AC068759.1 BS_W644VEVE ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr1--chr3]],translocation/5'-5' HSPG2 NA AC068759.1 NA Oncogene NA NA NA NA +5:38029056 5:38022644 LINC02107--AC034226.1(55680)/LINC02107(3053) BS_W644VEVE ARRIBA other 19 3 high [],duplication LINC02107 NA AC034226.1 LINC02107 NA NA NA NA NA +1:235746336 1:235529795 LYST--MTCYBP14(9110)/MTND6P14(7725) BS_W644VEVE ARRIBA frameshift 8 1 high [],inversion LYST NA MTCYBP14 MTND6P14 NA NA NA NA NA +2:15942854 12:4299860 MYCN--CCND2 BS_W644VEVE ARRIBA frameshift 5 1 medium [INTERCHROMOSOMAL[chr2--chr12]],translocation MYCN NA CCND2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_W644VEVE ARRIBA frameshift 18 5 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +12:564570 2:16391658 NINJ2--AC010880.1 BS_W644VEVE ARRIBA frameshift 10 3 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation/5'-5' NINJ2 NA AC010880.1 NA NA NA NA NA NA +12:663328 12:4249193 NINJ2--CCND2-AS1 BS_W644VEVE ARRIBA frameshift 15 0 high [INTRACHROMOSOMAL[chr12:3.58Mb]],duplication NINJ2 NA CCND2-AS1 NA NA Oncogene NA NA NA +17:45086652 17:59910562 NMT1--RPS6KB1 BS_W644VEVE ARRIBA frameshift 12 1 high [INTRACHROMOSOMAL[chr17:14.78Mb]],deletion NMT1 NA RPS6KB1 NA Oncogene Kinase NA NA NA +2:225513672 4:121524666 NYAP2--TUBB4BP5(72699)/ANXA5(143289) BS_W644VEVE ARRIBA frameshift 2 1 medium [],translocation NYAP2 NA TUBB4BP5 ANXA5 NA NA NA NA NA +12:3826158 12:4119632 PARP11--AC007207.1(1500)/CCND2-AS1(129133) BS_W644VEVE ARRIBA frameshift 4 1 high [],inversion PARP11 NA AC007207.1 CCND2-AS1 NA NA NA Oncogene NA +12:3873212 12:4137023 PARP11--AC007207.1(18891)/CCND2-AS1(111742) BS_W644VEVE ARRIBA frameshift 1 0 low [],duplication PARP11 NA AC007207.1 CCND2-AS1 NA NA NA Oncogene NA +12:3826158 12:663317 PARP11--AC021054.1 BS_W644VEVE ARRIBA frameshift 20 7 high [INTRACHROMOSOMAL[chr12:3.13Mb]],inversion PARP11 NA AC021054.1 NA NA NA NA NA NA +12:3826158 12:663317 PARP11--AC021054.1 BS_W644VEVE STARFUSION other 21 8 NA [INTRACHROMOSOMAL[chr12:3.13Mb]] PARP11 NA AC021054.1 NA NA NA NA NA NA +12:3873212 12:1027748 PARP11--ERC1 BS_W644VEVE ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chr12:2.30Mb]],inversion PARP11 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA +12:3826158 12:1104750 PARP11--ERC1 BS_W644VEVE ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr12:2.30Mb]],inversion PARP11 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA +12:3826158 12:4108491 PARP11--HSPA8P5(8972)/AC007207.1(1170) BS_W644VEVE ARRIBA frameshift 4 1 high [],inversion PARP11 NA HSPA8P5 AC007207.1 NA NA NA NA NA +7:100611114 4:157637998 PCOLCE(2939)/MOSPD3(988)--AC093817.1 BS_W644VEVE ARRIBA other 33 0 medium [],translocation PCOLCE MOSPD3 AC093817.1 NA NA NA NA NA NA +12:931220 12:483931 RAD52--B4GALNT3 BS_W644VEVE ARRIBA frameshift 18 1 high [INTRACHROMOSOMAL[chr12:0.35Mb]],deletion/5'-5' RAD52 NA B4GALNT3 NA Oncogene NA NA NA NA +12:989809 12:1655102 RAD52--WNT5B(7859)/MIR3649(5213) BS_W644VEVE ARRIBA other 21 0 high [],duplication RAD52 NA WNT5B MIR3649 Oncogene NA NA NA NA +2:15987446 12:4026222 RN7SL104P(36465)/AC010145.1(9603)--AC007207.2 BS_W644VEVE ARRIBA other 3 0 medium [],translocation RN7SL104P AC010145.1 AC007207.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_W644VEVE ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_W644VEVE ARRIBA other 33 1 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +8:73603726 8:73519134 STAU2--STAU2 BS_W644VEVE ARRIBA frameshift 26 1 high [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.33Mb]],inversion/5'-5' STAU2 NA STAU2 NA NA NA NA NA NA +14:102777675 2:145171998 TRAF3--TEX41 BS_W644VEVE ARRIBA other 6 0 high [INTERCHROMOSOMAL[chr14--chr2]],translocation TRAF3 NA TEX41 NA Oncogene NA NA NA NA +14:102777675 2:145164173 TRAF3--TEX41 BS_W644VEVE ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr14--chr2]],translocation TRAF3 NA TEX41 NA Oncogene NA NA NA NA +Y:19041370 Y:6759580 TTTY14--SRIP3(40400)/AC013412.1(29573) BS_W644VEVE ARRIBA other 1 1 medium [],inversion TTTY14 NA SRIP3 AC013412.1 NA NA NA NA NA +12:754324 12:4137023 WNK1--AC007207.1(18891)/CCND2-AS1(111742) BS_W644VEVE ARRIBA frameshift 4 0 medium [],inversion WNK1 NA AC007207.1 CCND2-AS1 Kinase, Kinase NA NA Oncogene NA +12:830160 12:409368 WNK1--CCDC77 BS_W644VEVE ARRIBA frameshift 18 9 high [ChimerSeq,CCLE,INTRACHROMOSOMAL[chr12:0.31Mb]],duplication WNK1 NA CCDC77 NA Kinase, Kinase NA NA NA TCGAFusion +12:830160 12:411747 WNK1--CCDC77 BS_W644VEVE ARRIBA frameshift 11 6 high [ChimerSeq,CCLE,INTRACHROMOSOMAL[chr12:0.31Mb]],duplication WNK1 NA CCDC77 NA Kinase, Kinase NA NA NA TCGAFusion +12:830160 12:428769 WNK1--CCDC77 BS_W644VEVE ARRIBA frameshift 1 0 low [ChimerSeq,CCLE,INTRACHROMOSOMAL[chr12:0.31Mb]],duplication WNK1 NA CCDC77 NA Kinase, Kinase NA NA NA TCGAFusion +12:754324 12:433174 WNK1--CCDC77 BS_W644VEVE ARRIBA in-frame 1 0 low [ChimerSeq,CCLE,INTRACHROMOSOMAL[chr12:0.31Mb]],duplication WNK1 NA CCDC77 NA Kinase, Kinase NA NA NA TCGAFusion +12:830160 12:409368 WNK1--CCDC77 BS_W644VEVE STARFUSION other 18 9 NA [ChimerSeq,CCLE,INTRACHROMOSOMAL[chr12:0.31Mb]] WNK1 NA CCDC77 NA Kinase, Kinase NA NA NA TCGAFusion +12:830160 12:411747 WNK1--CCDC77 BS_W644VEVE STARFUSION frameshift 11 9 NA [ChimerSeq,CCLE,INTRACHROMOSOMAL[chr12:0.31Mb]] WNK1 NA CCDC77 NA Kinase, Kinase NA NA NA TCGAFusion +12:830160 2:15941097 WNK1--MYCNOS BS_W644VEVE ARRIBA frameshift 19 4 medium [INTERCHROMOSOMAL[chr12--chr2]],translocation WNK1 NA MYCNOS NA Kinase, Kinase NA NA NA NA +12:830160 2:15941097 WNK1--MYCNOS BS_W644VEVE STARFUSION other 19 4 NA [INTERCHROMOSOMAL[chr12--chr2]] WNK1 NA MYCNOS NA Kinase, Kinase NA NA NA NA +12:830160 2:15953979 WNK1--RN7SL104P(2998)/AC010145.1(43070) BS_W644VEVE ARRIBA frameshift 4 0 medium [],translocation WNK1 NA RN7SL104P AC010145.1 Kinase, Kinase NA NA NA NA +12:1635100 12:4112403 WNT5B--AC007207.1 BS_W644VEVE ARRIBA other 4 3 medium [INTRACHROMOSOMAL[chr12:2.46Mb]],duplication/3'-3' WNT5B NA AC007207.1 NA NA NA NA NA NA +12:1584233 12:3272884 WNT5B--TSPAN9 BS_W644VEVE ARRIBA other 25 5 medium [INTRACHROMOSOMAL[chr12:1.43Mb]],inversion/3'-3' WNT5B NA TSPAN9 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_W6AC5J3C ARRIBA other 70 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_W6AC5J3C ARRIBA other 70 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93592733 15:93557472 AC110023.1--AC091078.1 BS_W6AC5J3C ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_W6AC5J3C ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_W6AC5J3C ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93557472 AC110023.1--AC091078.1 BS_W6AC5J3C ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +5:91102340 5:90781430 ADGRV1--ADGRV1 BS_W6AC5J3C ARRIBA frameshift 11 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +17:7656768 14:49862815 ATP1B2--RN7SL2 BS_W6AC5J3C STARFUSION other 13 4 NA [INTERCHROMOSOMAL[chr17--chr14]] ATP1B2 NA RN7SL2 NA NA NA NA NA NA +21:40124195 21:40144731 DSCAM--DSCAM BS_W6AC5J3C ARRIBA in-frame 7 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr21:0.84Mb]],duplication/non-canonical_splicing DSCAM NA DSCAM NA NA NA NA NA NA +10:121483698 10:66103249 FGFR2--CTNNA3 BS_W6AC5J3C ARRIBA in-frame 540 97 high [INTRACHROMOSOMAL[chr10:53.78Mb]],deletion FGFR2 NA CTNNA3 NA Kinase, CosmicCensus, Oncogene, Kinase TumorSuppressorGene NA NA NA +10:121483698 10:66103249 FGFR2--CTNNA3 BS_W6AC5J3C STARFUSION in-frame 751 97 NA [INTRACHROMOSOMAL[chr10:53.78Mb]] FGFR2 NA CTNNA3 NA Kinase, CosmicCensus, Oncogene, Kinase TumorSuppressorGene NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_W6AC5J3C ARRIBA frameshift 6 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +3:178859489 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_W6AC5J3C ARRIBA other 3 2 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_W6AC5J3C ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_W6AC5J3C ARRIBA other 70 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:216321883 1:216423493 USH2A--USH2A(97)/ESRRG(79753) BS_W6AC5J3C ARRIBA frameshift 2 0 medium [],duplication USH2A NA USH2A ESRRG NA NA NA Oncogene, TranscriptionFactor NA +8:71269740 8:132794410 EYA1--PHF20L1 BS_W72364MN ARRIBA frameshift 10 1 high [INTRACHROMOSOMAL[chr8:61.41Mb]],inversion EYA1 NA PHF20L1 NA NA NA NA NA NA +8:71269740 8:132794410 EYA1--PHF20L1 BS_W72364MN STARFUSION frameshift 10 1 NA [INTRACHROMOSOMAL[chr8:61.41Mb]] EYA1 NA PHF20L1 NA NA NA NA NA NA +6:64590223 6:64593309 EYS--EYS BS_W72364MN ARRIBA frameshift 10 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +8:132777911 8:71244692 PHF20L1--EYA1 BS_W72364MN ARRIBA frameshift 13 0 high [INTRACHROMOSOMAL[chr8:61.41Mb]],inversion PHF20L1 NA EYA1 NA NA NA NA NA NA +8:132775645 8:71244692 PHF20L1--EYA1 BS_W72364MN ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr8:61.41Mb]],inversion PHF20L1 NA EYA1 NA NA NA NA NA NA +8:132777911 8:71244692 PHF20L1--EYA1 BS_W72364MN STARFUSION frameshift 14 0 NA [INTRACHROMOSOMAL[chr8:61.41Mb]] PHF20L1 NA EYA1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_W7FP2G3F ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_W7FP2G3F ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_W7FP2G3F ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +14:49586856 14:20343400 AL139099.5--AL355075.4 BS_W7FP2G3F STARFUSION other 5 15 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586855 14:20343403 AL139099.5--RPPH1 BS_W7FP2G3F STARFUSION other 6 15 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +9:119208719 9:119214155 BRINP1--BRINP1 BS_W7FP2G3F ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +3:178748404 3:178909706 KCNMB2-AS1--KCNMB2-AS1(49301)/ZMAT3(107517) BS_W7FP2G3F ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_W7FP2G3F ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +14:49586854 14:20343402 RN7SL1--AL355075.4 BS_W7FP2G3F STARFUSION other 5 15 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586855 14:20343403 RN7SL1--RPPH1 BS_W7FP2G3F STARFUSION other 6 15 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_W7FP2G3F ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:27958606 12:28133252 AC008011.2--CCDC91 BS_W80TJC27 STARFUSION other 7 5 NA [INTRACHROMOSOMAL[chr12:0.16Mb]] AC008011.2 NA CCDC91 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_W80TJC27 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +19:15410520 11:66275804 AKAP8L--RAB1B BS_W80TJC27 ARRIBA frameshift 21 1 high [INTERCHROMOSOMAL[chr19--chr11]],translocation AKAP8L NA RAB1B NA TranscriptionFactor NA NA NA NA +19:15410520 11:66275804 AKAP8L--RAB1B BS_W80TJC27 STARFUSION frameshift 20 1 NA [INTERCHROMOSOMAL[chr19--chr11]] AKAP8L NA RAB1B NA TranscriptionFactor NA NA NA NA +20:46474501 20:46504740 AL031686.1--ZNF334 BS_W80TJC27 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46485529 20:46504740 AL031686.1--ZNF334 BS_W80TJC27 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +2:97224879 2:97167577 ANKRD36--ANKRD36 BS_W80TJC27 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.15Mb]],duplication/non-canonical_splicing ANKRD36 NA ANKRD36 NA NA NA NA NA NA +X:40097215 X:72159928 BCOR--BX119917.1 BS_W80TJC27 ARRIBA other 6 0 high [INTRACHROMOSOMAL[chrX:31.98Mb]],duplication/5'-5' BCOR NA BX119917.1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +X:40097215 X:72155726 BCOR--NHSL2 BS_W80TJC27 ARRIBA other 7 1 high [INTRACHROMOSOMAL[chrX:31.73Mb]],duplication/5'-5' BCOR NA NHSL2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_W80TJC27 ARRIBA in-frame 41 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_W80TJC27 ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_W80TJC27 STARFUSION in-frame 42 0 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +19:18588900 X:19569188 C19orf60--SH3KBP1 BS_W80TJC27 ARRIBA frameshift 10 0 high [INTERCHROMOSOMAL[chr19--chrX]],translocation C19orf60 NA SH3KBP1 NA NA NA NA NA NA +19:18589077 X:19569188 C19orf60--SH3KBP1 BS_W80TJC27 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr19--chrX]],translocation C19orf60 NA SH3KBP1 NA NA NA NA NA NA +19:18588900 X:19569188 C19orf60--SH3KBP1 BS_W80TJC27 STARFUSION frameshift 10 0 NA [INTERCHROMOSOMAL[chr19--chrX]] C19orf60 NA SH3KBP1 NA NA NA NA NA NA +X:35941398 X:19584720 CFAP47--SH3KBP1 BS_W80TJC27 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chrX:16.03Mb]],duplication/5'-5' CFAP47 NA SH3KBP1 NA NA NA NA NA NA +15:92974950 15:92955423 CHD2--CHD2 BS_W80TJC27 ARRIBA in-frame 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +11:68056446 19:16553641 CHKA--SLC35E1 BS_W80TJC27 ARRIBA other 3 0 low [INTERCHROMOSOMAL[chr11--chr19]],translocation CHKA NA SLC35E1 NA Oncogene, Kinase NA NA NA NA +2:195897667 2:195907009 DNAH7--DNAH7 BS_W80TJC27 ARRIBA in-frame 12 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA +3:180968254 3:180957819 FXR1--FXR1 BS_W80TJC27 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.11Mb]],duplication/non-canonical_splicing FXR1 NA FXR1 NA NA NA NA NA NA +16:71018129 16:71020317 HYDIN--HYDIN BS_W80TJC27 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.42Mb]],duplication/non-canonical_splicing HYDIN NA HYDIN NA NA NA NA NA NA +14:100955949 14:100913432 MEG8--MEG8 BS_W80TJC27 ARRIBA other 14 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA +11:64803945 19:16930184 MEN1--CPAMD8 BS_W80TJC27 ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr11--chr19]],translocation/5'-5' MEN1 NA CPAMD8 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +20:46474501 20:46504740 MKRN7P--ZNF334 BS_W80TJC27 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr20:0.02Mb],LOCAL_REARRANGEMENT:-:[22398]],duplication MKRN7P NA ZNF334 NA NA TranscriptionFactor NA NA NA +19:17075874 11:68054047 MYO9B--CHKA BS_W80TJC27 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr19--chr11]],translocation MYO9B NA CHKA NA NA Oncogene, Kinase NA NA NA +19:19235096 11:67906010 NCAN--AP003716.1 BS_W80TJC27 ARRIBA frameshift 15 3 high [INTERCHROMOSOMAL[chr19--chr11]],translocation NCAN NA AP003716.1 NA NA NA NA NA NA +19:19235096 11:67906010 NCAN--AP003716.1 BS_W80TJC27 STARFUSION other 15 4 NA [INTERCHROMOSOMAL[chr19--chr11]] NCAN NA AP003716.1 NA NA NA NA NA NA +8:68099843 8:68093605 PREX2--PREX2 BS_W80TJC27 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.28Mb]],duplication/non-canonical_splicing PREX2 NA PREX2 NA CosmicCensus CosmicCensus NA NA NA +3:181231845 6:159780370 RNU6-4P--SNORA20 BS_W80TJC27 STARFUSION other 6 0 NA [INTERCHROMOSOMAL[chr3--chrY]] RNU6-4P NA SNORA20 NA NA NA NA NA NA +1:55145998 1:55148570 USP24--USP24 BS_W80TJC27 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing USP24 NA USP24 NA Oncogene Oncogene NA NA NA +11:11930751 11:11922724 USP47--USP47 BS_W80TJC27 ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr11:0.12Mb]],duplication/non-canonical_splicing USP47 NA USP47 NA NA NA NA NA NA +11:65097127 11:66288292 VPS51--YIF1A BS_W80TJC27 ARRIBA in-frame 9 4 high [INTRACHROMOSOMAL[chr11:1.17Mb]],inversion VPS51 NA YIF1A NA NA NA NA NA NA +11:65096478 11:66287916 VPS51--YIF1A BS_W80TJC27 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:1.17Mb]],inversion VPS51 NA YIF1A NA NA NA NA NA NA +11:65097127 11:66288292 VPS51--YIF1A BS_W80TJC27 STARFUSION in-frame 9 5 NA [INTRACHROMOSOMAL[chr11:1.17Mb]] VPS51 NA YIF1A NA NA NA NA NA NA +11:65096478 11:66287916 VPS51--YIF1A BS_W80TJC27 STARFUSION in-frame 1 5 NA [INTRACHROMOSOMAL[chr11:1.17Mb]] VPS51 NA YIF1A NA NA NA NA NA NA +19:2269744 19:18541995 AC005258.1--FKBP8 BS_W97QQYKQ ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr19:16.19Mb]],inversion AC005258.1 NA FKBP8 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_W97QQYKQ ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_W97QQYKQ ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:58506060 1:58539310 DAB1--OMA1 BS_W97QQYKQ ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58253807 1:58539310 DAB1--OMA1 BS_W97QQYKQ ARRIBA other 2 3 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58536741 DAB1--OMA1 BS_W97QQYKQ ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58527261 1:58536741 DAB1--OMA1 BS_W97QQYKQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58534331 DAB1--OMA1 BS_W97QQYKQ ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +3:55683794 3:55992250 ERC2--ERC2 BS_W97QQYKQ ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_W97QQYKQ ARRIBA frameshift 4 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:138894342 7:140781693 KIAA1549--BRAF BS_W97QQYKQ ARRIBA in-frame 13 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138894342 7:140781693 KIAA1549--BRAF BS_W97QQYKQ STARFUSION in-frame 16 1 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +19:2269744 19:18541995 OAZ1--FKBP8 BS_W97QQYKQ ARRIBA in-frame 3 0 medium [ChimerSeq,GTEx,INTRACHROMOSOMAL[chr19:16.26Mb]],inversion OAZ1 NA FKBP8 NA NA NA NA NA NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_W97QQYKQ ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_W97QQYKQ ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_W9AT0MR7 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_W9AT0MR7 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:79883162 8:79919148 AC036214.1(11403)/MRPS28(35555)--AC036214.3 BS_W9AT0MR7 ARRIBA other 1 0 low [],duplication AC036214.1 MRPS28 AC036214.3 NA NA NA NA NA NA +8:79883162 8:79919148 AC036214.1(11403)/MRPS28(35555)--MRPS28 BS_W9AT0MR7 ARRIBA other 1 0 low [],duplication AC036214.1 MRPS28 MRPS28 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_W9AT0MR7 ARRIBA other 6 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +1:93642304 1:93841403 BCAR3--BCAR3 BS_W9AT0MR7 ARRIBA frameshift 2 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.29Mb]],inversion/5'-5' BCAR3 NA BCAR3 NA NA NA NA NA NA +9:100578551 9:100454249 CAVIN4--MSANTD3-TMEFF1 BS_W9AT0MR7 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100586185 9:100547744 CAVIN4--TMEFF1 BS_W9AT0MR7 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_W9AT0MR7 ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_W9AT0MR7 ARRIBA frameshift 5 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_W9AT0MR7 ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +2:8287338 2:8392968 LINC00299--LINC00299(9347)/AC011747.2(150624) BS_W9AT0MR7 ARRIBA other 3 1 high [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA +17:21091179 17:21090268 LINC01563(564)/DHRS7B(32185)--LINC01563 BS_W9AT0MR7 ARRIBA other 7 0 medium [],duplication LINC01563 DHRS7B LINC01563 NA NA NA NA NA NA +1:219218712 1:219210532 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_W9AT0MR7 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +2:39365750 12:76028076 MAP4K3--PHLDA1 BS_W9AT0MR7 ARRIBA other 4 0 low [INTERCHROMOSOMAL[chr2--chr12]],translocation/3'-3' MAP4K3 NA PHLDA1 NA Kinase NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_W9AT0MR7 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_W9AT0MR7 ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:57423982 11:57577082 SLC43A3--RPS4XP13 BS_W9AT0MR7 ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr11:0.15Mb]],duplication SLC43A3 NA RPS4XP13 NA NA NA NA NA NA +11:57425541 11:57577082 SLC43A3--RPS4XP13 BS_W9AT0MR7 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr11:0.15Mb]],duplication SLC43A3 NA RPS4XP13 NA NA NA NA NA NA +8:50502880 8:50438543 SNTG1--SNTG1 BS_W9AT0MR7 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_W9AT0MR7 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_W9N9844Q ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_W9N9844Q ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +18:70531787 18:70486245 AC091305.2--AC091305.1(55120)/AC091305.2(3385) BS_W9N9844Q ARRIBA other 2 1 medium [],duplication AC091305.2 NA AC091305.1 AC091305.2 NA NA NA NA NA +3:176947307 3:177098541 AC092920.1(79469)/MTND5P15(63412)--TBL1XR1 BS_W9N9844Q ARRIBA other 1 0 low [],duplication AC092920.1 MTND5P15 TBL1XR1 NA NA CosmicCensus NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_W9N9844Q ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_W9N9844Q ARRIBA other 1 3 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_W9N9844Q ARRIBA frameshift 3 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +8:88197158 8:87459351 MMP16--CNBD1 BS_W9N9844Q ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr8:0.42Mb]],deletion/5'-5' MMP16 NA CNBD1 NA NA CosmicCensus NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_W9N9844Q ARRIBA frameshift 22 3 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_W9N9844Q ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_W9N9844Q ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WAXJY4XQ ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WAXJY4XQ ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:97935941 1:18960502 CRTAC1--IFFO2(3816)/AL137127.1(111608) BS_WAXJY4XQ ARRIBA frameshift 24 1 medium [],translocation CRTAC1 NA IFFO2 AL137127.1 NA NA NA NA NA +4:175812191 4:183632723 GPM6A--AC107214.2(115196)/RWDD4(6912) BS_WAXJY4XQ ARRIBA frameshift 4 0 medium [],inversion GPM6A NA AC107214.2 RWDD4 NA NA NA NA NA +6:102051152 6:124118022 GRIK2--NKAIN2 BS_WAXJY4XQ ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr6:21.73Mb]],deletion GRIK2 NA NKAIN2 NA NA Oncogene NA NA NA +6:102035566 6:124283005 GRIK2--NKAIN2 BS_WAXJY4XQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:21.73Mb]],deletion GRIK2 NA NKAIN2 NA NA Oncogene NA NA NA +2:17878950 2:15928979 KCNS3--MYCNOS BS_WAXJY4XQ ARRIBA other 5 1 medium [INTRACHROMOSOMAL[chr2:1.94Mb]],inversion KCNS3 NA MYCNOS NA NA NA NA NA NA +2:17878950 2:15928979 KCNS3--MYCNUT BS_WAXJY4XQ ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr2:1.94Mb]],inversion/3'-3' KCNS3 NA MYCNUT NA NA NA NA NA NA +7:23106146 7:5761138 KLHL7--RNF216 BS_WAXJY4XQ ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:17.32Mb]],inversion KLHL7 NA RNF216 NA NA Oncogene NA NA NA +2:15558580 2:15776121 NBAS--LINC01804(31782)/AC113608.2(25626) BS_WAXJY4XQ ARRIBA frameshift 2 1 medium [],inversion NBAS NA LINC01804 AC113608.2 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WAXJY4XQ ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:219477445 10:57101702 SPEG--SNORD2(505671)/MIR3924(202777) BS_WAXJY4XQ ARRIBA frameshift 4 0 high [],translocation SPEG NA SNORD2 MIR3924 Kinase, Kinase NA NA NA NA +5:83483588 5:108431492 VCAN--FBXL17 BS_WAXJY4XQ ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr5:24.28Mb]],inversion VCAN NA FBXL17 NA Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WCRKYV0T ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WCRKYV0T ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_WCRKYV0T ARRIBA other 12 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_WCRKYV0T ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +22:32273507 22:32268288 AL008723.1--SLC5A4-AS1 BS_WCRKYV0T STARFUSION other 14 2 NA [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]] AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_WCRKYV0T ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_WCRKYV0T ARRIBA frameshift 13 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_WCRKYV0T ARRIBA frameshift 6 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_WCRKYV0T ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_WCRKYV0T ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_WCRKYV0T ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_WCRKYV0T ARRIBA frameshift 18 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_WCRKYV0T ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_WCRKYV0T ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_WCRKYV0T ARRIBA frameshift 51 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_WCRKYV0T ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +18:79307234 18:79193183 ATP9B--ATP9B BS_WCRKYV0T ARRIBA frameshift 26 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_WCRKYV0T ARRIBA in-frame 4 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_WCRKYV0T ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_WCRKYV0T ARRIBA in-frame 4 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_WCRKYV0T ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:15695337 9:15563978 CCDC171--CCDC171 BS_WCRKYV0T ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.51Mb]],duplication/non-canonical_splicing CCDC171 NA CCDC171 NA NA NA NA NA NA +3:2903005 3:2883145 CNTN4--CNTN4 BS_WCRKYV0T ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_WCRKYV0T ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +6:83924592 6:83864175 CYB5R4--CYB5R4 BS_WCRKYV0T ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA +4:150239875 4:150203795 DCLK2--DCLK2 BS_WCRKYV0T ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr4:0.18Mb]],duplication/non-canonical_splicing DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_WCRKYV0T ARRIBA frameshift 49 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +X:47649921 X:47652144 ELK1--UXT BS_WCRKYV0T ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:-:[1194]],duplication ELK1 NA UXT NA Oncogene, TranscriptionFactor NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_WCRKYV0T ARRIBA in-frame 125 17 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_WCRKYV0T ARRIBA frameshift 2 2 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_WCRKYV0T ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_WCRKYV0T ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:43501322 7:43492075 HECW1--HECW1 BS_WCRKYV0T ARRIBA frameshift 12 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_WCRKYV0T ARRIBA frameshift 51 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_WCRKYV0T ARRIBA frameshift 18 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:211019256 KCNH1--AL590132.1 BS_WCRKYV0T ARRIBA in-frame 1 4 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_WCRKYV0T ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_WCRKYV0T ARRIBA frameshift 13 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_WCRKYV0T ARRIBA frameshift 6 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_WCRKYV0T ARRIBA frameshift 5 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_WCRKYV0T ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211082898 KCNH1--AL590132.1 BS_WCRKYV0T ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_WCRKYV0T ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_WCRKYV0T ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_WCRKYV0T ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_WCRKYV0T ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_WCRKYV0T ARRIBA frameshift 51 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_WCRKYV0T ARRIBA frameshift 14 4 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_WCRKYV0T ARRIBA in-frame 15 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_WCRKYV0T ARRIBA other 10 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +14:46920012 14:47035304 MDGA2--MDGA2 BS_WCRKYV0T ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +8:74612940 8:74500513 MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_WCRKYV0T ARRIBA other 6 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA +8:88056128 8:88167973 MMP16--MMP16 BS_WCRKYV0T ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.30Mb]],duplication/non-canonical_splicing MMP16 NA MMP16 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_WCRKYV0T ARRIBA other 4 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +8:17341363 8:17373240 MTMR7--MTMR7 BS_WCRKYV0T ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_WCRKYV0T ARRIBA other 12 1 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_WCRKYV0T ARRIBA in-frame 27 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_WCRKYV0T ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +18:34093465 18:34112697 NOL4--NOL4 BS_WCRKYV0T ARRIBA frameshift 13 0 medium [SELFIE,INTRACHROMOSOMAL[chr18:0.37Mb]],duplication NOL4 NA NOL4 NA NA NA NA NA NA +7:77951712 7:77920279 PHTF2--PHTF2 BS_WCRKYV0T ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_WCRKYV0T ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +7:39086031 7:38986246 POU6F2--POU6F2 BS_WCRKYV0T ARRIBA frameshift 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +12:81325777 12:81384244 PPFIA2--PPFIA2 BS_WCRKYV0T ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.50Mb]],duplication/non-canonical_splicing PPFIA2 NA PPFIA2 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_WCRKYV0T ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +9:133100268 9:136984490 RALGDS--AL807752.7 BS_WCRKYV0T ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr9:3.83Mb]],inversion RALGDS NA AL807752.7 NA CosmicCensus, Oncogene NA NA NA NA +9:133100268 9:136984490 RALGDS--LCNL1 BS_WCRKYV0T ARRIBA frameshift 4 0 high [GTEx,INTRACHROMOSOMAL[chr9:3.83Mb]],inversion RALGDS NA LCNL1 NA CosmicCensus, Oncogene NA NA NA NA +1:240868587 1:240936706 RGS7--RGS7 BS_WCRKYV0T ARRIBA frameshift 14 5 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing RGS7 NA RGS7 NA CosmicCensus CosmicCensus NA NA NA +14:49862564 6:52995632 RN7SL2--7SK BS_WCRKYV0T STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL2 NA 7SK NA NA NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_WCRKYV0T ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +6:88769774 6:88844521 RNGTT--RNGTT BS_WCRKYV0T ARRIBA frameshift 8 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.35Mb]],duplication/non-canonical_splicing RNGTT NA RNGTT NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WCRKYV0T ARRIBA other 28 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:21292164 12:21306988 SLCO1A2--SLCO1A2 BS_WCRKYV0T ARRIBA in-frame 6 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA +8:50502880 8:50438543 SNTG1--SNTG1 BS_WCRKYV0T ARRIBA frameshift 18 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +6:147052586 6:147119477 STXBP5-AS1--STXBP5-AS1 BS_WCRKYV0T ARRIBA other 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.36Mb]],duplication STXBP5-AS1 NA STXBP5-AS1 NA NA NA NA NA NA +5:76209887 5:76194919 SV2C--SV2C BS_WCRKYV0T ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.27Mb]],duplication/non-canonical_splicing SV2C NA SV2C NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_WCRKYV0T ARRIBA in-frame 14 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_WCRKYV0T ARRIBA other 3 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WE3Q8A73 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WE3Q8A73 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_WE3Q8A73 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +14:60019260 14:59997656 LRRC9--LRRC9 BS_WE3Q8A73 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_WE3Q8A73 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WE3Q8A73 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WFD0GE5X ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WFD0GE5X ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:199070153 2:198579708 AC020718.1--AC019330.1 BS_WFD0GE5X ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_WFD0GE5X ARRIBA other 4 0 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_WFD0GE5X ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_WFD0GE5X ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +5:7804692 5:7784365 ADCY2--ADCY2 BS_WFD0GE5X ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.43Mb]],duplication/non-canonical_splicing ADCY2 NA ADCY2 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_WFD0GE5X ARRIBA other 5 1 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +X:36014912 X:35966565 CFAP47--CFAP47 BS_WFD0GE5X ARRIBA frameshift 16 2 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +12:123859268 12:123853206 DNAH10--DNAH10 BS_WFD0GE5X ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA +20:54610523 20:54554933 DOK5--DOK5 BS_WFD0GE5X ARRIBA in-frame 3 2 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA +1:15369502 1:15367463 FHAD1--FHAD1 BS_WFD0GE5X ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.15Mb]],duplication/non-canonical_splicing FHAD1 NA FHAD1 NA NA NA NA NA NA +4:161455004 4:161500134 FSTL5--FSTL5 BS_WFD0GE5X ARRIBA frameshift 27 3 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_WFD0GE5X ARRIBA other 28 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +1:60528919 1:60600250 LINC01748--LINC01748 BS_WFD0GE5X ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing LINC01748 NA LINC01748 NA NA NA NA NA NA +10:26193311 10:26173663 MYO3A--MYO3A BS_WFD0GE5X ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.28Mb]],duplication/non-canonical_splicing MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_WFD0GE5X ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +12:106750793 12:106686884 RFX4--RFX4 BS_WFD0GE5X ARRIBA frameshift 23 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WFD0GE5X ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_WFD0GE5X ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WG203ECV ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WG203ECV ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:23437426 15:34240831 ASAP3--SLC12A6 BS_WG203ECV ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr1--chr15]],translocation ASAP3 NA SLC12A6 NA NA NA NA NA NA +11:61848215 5:150406960 FADS2--CD74 BS_WG203ECV ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr11--chr5]],translocation FADS2 NA CD74 NA NA CosmicCensus, Oncogene NA NA NA +X:153950813 11:10807294 HCFC1--EIF4G2 BS_WG203ECV ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chrX--chr11]],translocation HCFC1 NA EIF4G2 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_WG203ECV ARRIBA other 5 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_WG203ECV ARRIBA in-frame 4 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +10:71819712 15:93052506 PSAP--RGMA BS_WG203ECV ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr10--chr15]],translocation PSAP NA RGMA NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WG203ECV ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WGK8ZMVA ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WGK8ZMVA ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_WGK8ZMVA ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93557472 AC110023.1--AC091078.1 BS_WGK8ZMVA ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_WGK8ZMVA ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_WGK8ZMVA ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_WGK8ZMVA ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +20:32369123 15:24912363 ASXL1--SNRPN BS_WGK8ZMVA ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr20--chr15]],translocation ASXL1 NA SNRPN NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +20:32371874 15:24886516 ASXL1--SNRPN BS_WGK8ZMVA ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr20--chr15]],translocation ASXL1 NA SNRPN NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +18:33683568 18:33644894 ASXL3--ASXL3 BS_WGK8ZMVA ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.17Mb]],duplication/non-canonical_splicing ASXL3 NA ASXL3 NA NA NA NA NA NA +X:40063046 22:41178265 BCOR--EP300 BS_WGK8ZMVA ARRIBA frameshift 164 23 high [ChimerSeq,FA_CancerSupp,INTERCHROMOSOMAL[chrX--chr22]],translocation BCOR NA EP300 NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +X:40063046 22:41178265 BCOR--EP300 BS_WGK8ZMVA STARFUSION frameshift 167 23 NA [ChimerSeq,FA_CancerSupp,INTERCHROMOSOMAL[chrX--chr22]] BCOR NA EP300 NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +12:122792121 12:122762187 CCDC62--DENR BS_WGK8ZMVA ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_REARRANGEMENT:+:[3263]],duplication CCDC62 NA DENR NA NA Oncogene NA NA NA +22:41178264 X:40063065 EP300--BCOR BS_WGK8ZMVA ARRIBA in-frame 121 11 high [FA_CancerSupp,ChimerSeq,INTERCHROMOSOMAL[chr22--chrX]],translocation EP300 NA BCOR NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA TCGAFusion +22:41178264 X:40063065 EP300--BCOR BS_WGK8ZMVA STARFUSION in-frame 121 11 NA [FA_CancerSupp,ChimerSeq,INTERCHROMOSOMAL[chr22--chrX]] EP300 NA BCOR NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA TCGAFusion +22:41177816 X:40062393 EP300--BCOR BS_WGK8ZMVA STARFUSION in-frame 17 11 NA [FA_CancerSupp,ChimerSeq,INTERCHROMOSOMAL[chr22--chrX]] EP300 NA BCOR NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA TCGAFusion +3:55683794 3:55992250 ERC2--ERC2 BS_WGK8ZMVA ARRIBA in-frame 7 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_WGK8ZMVA ARRIBA other 7 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_WGK8ZMVA ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_WGK8ZMVA ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_WGK8ZMVA ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_WGK8ZMVA ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_WGK8ZMVA ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +18:7032984 18:7040236 LAMA1--LAMA1 BS_WGK8ZMVA ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA +6:129471532 6:129558166 LAMA2--AL356124.1 BS_WGK8ZMVA ARRIBA other 1 3 medium [INTRACHROMOSOMAL[chr6:0.01Mb],LOCAL_INVERSION:+:-:[10057]],duplication/3'-3' LAMA2 NA AL356124.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WGK8ZMVA ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:50519831 10:48583152 SGMS1--ARHGAP22 BS_WGK8ZMVA ARRIBA other 9 0 high [INTRACHROMOSOMAL[chr10:1.65Mb]],deletion SGMS1 NA ARHGAP22 NA TumorSuppressorGene, Oncogene NA NA NA NA +10:50519831 10:48555550 SGMS1--ARHGAP22 BS_WGK8ZMVA ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:1.65Mb]],deletion SGMS1 NA ARHGAP22 NA TumorSuppressorGene, Oncogene NA NA NA NA +13:21420179 13:58359659 ZDHHC20--LINC00374(126542)/AL161423.1(17854) BS_WGK8ZMVA ARRIBA frameshift 1 1 medium [],inversion ZDHHC20 NA LINC00374 AL161423.1 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WH5HDE0A ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WH5HDE0A ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:155503021 7:155509097 AC009403.2--AC009403.2 BS_WH5HDE0A ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA +4:79606956 4:79493152 AC092542.1(9783)/LINC02469(56805)--LINC00989 BS_WH5HDE0A ARRIBA other 3 1 high [],duplication AC092542.1 LINC02469 LINC00989 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_WH5HDE0A ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:100586185 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_WH5HDE0A ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100572518 CAVIN4--MSANTD3-TMEFF1 BS_WH5HDE0A ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100586185 9:100498765 CAVIN4--TMEFF1 BS_WH5HDE0A ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100572518 CAVIN4--TMEFF1 BS_WH5HDE0A ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_WH5HDE0A ARRIBA frameshift 7 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_WH5HDE0A ARRIBA frameshift 33 4 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +10:117201287 10:117183134 KCNK18--MIR3663HG(14075)/RPL12P26(13034) BS_WH5HDE0A ARRIBA frameshift 11 1 high [],duplication KCNK18 NA MIR3663HG RPL12P26 NA NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_WH5HDE0A ARRIBA frameshift 6 0 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +10:48306821 10:117194203 MAPK8--KCNK18 BS_WH5HDE0A ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr10:68.76Mb]],deletion MAPK8 NA KCNK18 NA Oncogene, Kinase NA NA NA NA +10:48306821 10:117209497 MAPK8--KCNK18 BS_WH5HDE0A ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:68.76Mb]],deletion MAPK8 NA KCNK18 NA Oncogene, Kinase NA NA NA NA +10:48306821 10:117183134 MAPK8--MIR3663HG(14075)/RPL12P26(13034) BS_WH5HDE0A ARRIBA other 64 0 high [],deletion MAPK8 NA MIR3663HG RPL12P26 Oncogene, Kinase NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WH5HDE0A ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_WH5HDE0A ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WH8G4VFB ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WH8G4VFB ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:63664647 1:162720491 AC022387.1--DDR2 BS_WH8G4VFB ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr10--chr1]],translocation/3'-3' AC022387.1 NA DDR2 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA +22:24090747 22:23890566 CABIN1--AP000350.4 BS_WH8G4VFB ARRIBA other 14 1 medium [INTRACHROMOSOMAL[chr22:0.12Mb]],duplication CABIN1 NA AP000350.4 NA NA NA NA NA NA +22:24087713 22:23894772 CABIN1--AP000350.4 BS_WH8G4VFB ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr22:0.12Mb]],duplication CABIN1 NA AP000350.4 NA NA NA NA NA NA +22:24087713 22:23894772 CABIN1--MIF BS_WH8G4VFB ARRIBA in-frame 5 1 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr22:0.12Mb]],duplication CABIN1 NA MIF NA NA Oncogene NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_WH8G4VFB ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +X:36205110 X:36179345 CFAP47--CFAP47 BS_WH8G4VFB ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +7:138001604 7:100474440 CREB3L2--TSC22D4 BS_WH8G4VFB ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr7:37.40Mb]],deletion CREB3L2 NA TSC22D4 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:102234240 7:149813630 CUX1--SSPO BS_WH8G4VFB ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:47.49Mb]],deletion CUX1 NA SSPO NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:102234240 7:149812561 CUX1--SSPO BS_WH8G4VFB ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:47.49Mb]],deletion CUX1 NA SSPO NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +2:84816083 2:84805665 DNAH6--DNAH6 BS_WH8G4VFB ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.30Mb]],duplication/non-canonical_splicing DNAH6 NA DNAH6 NA NA NA NA NA NA +7:100687697 7:128167320 GIGYF1--SND1(74711)/MIR129-1(40552) BS_WH8G4VFB ARRIBA frameshift 5 1 medium [],duplication GIGYF1 NA SND1 MIR129-1 NA CosmicCensus NA TumorSuppressorGene NA +7:100676799 7:140027406 GNB2--PARP12 BS_WH8G4VFB ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:39.34Mb]],inversion GNB2 NA PARP12 NA NA NA NA NA NA +7:100676799 7:140026348 GNB2--PARP12 BS_WH8G4VFB ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:39.34Mb]],inversion GNB2 NA PARP12 NA NA NA NA NA NA +10:70075830 2:148973336 H2AFY2--KIF5C BS_WH8G4VFB ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr10--chr2]],translocation H2AFY2 NA KIF5C NA NA NA NA NA NA +2:148962119 10:70090060 KIF5C--H2AFY2 BS_WH8G4VFB ARRIBA in-frame 8 0 high [INTERCHROMOSOMAL[chr2--chr10]],translocation KIF5C NA H2AFY2 NA NA NA NA NA NA +7:152435626 7:100463686 KMT2C--C7orf61 BS_WH8G4VFB ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:51.67Mb]],deletion KMT2C NA C7orf61 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +7:152435626 7:100456985 KMT2C--C7orf61 BS_WH8G4VFB ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:51.67Mb]],deletion KMT2C NA C7orf61 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +7:152435626 7:100467600 KMT2C--TSC22D4 BS_WH8G4VFB ARRIBA in-frame 5 0 high [INTRACHROMOSOMAL[chr7:51.66Mb]],deletion KMT2C NA TSC22D4 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +7:152435626 7:100464029 KMT2C--TSC22D4 BS_WH8G4VFB ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:51.66Mb]],deletion KMT2C NA TSC22D4 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +7:152435626 7:100463686 KMT2C--TSC22D4 BS_WH8G4VFB ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:51.66Mb]],deletion KMT2C NA TSC22D4 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WH8G4VFB ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:143875989 7:102178469 TCAF1--CUX1 BS_WH8G4VFB ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:41.57Mb]],inversion TCAF1 NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_WH8G4VFB ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WJ9H4NZZ ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WJ9H4NZZ ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:97935941 1:18960502 CRTAC1--IFFO2(3816)/AL137127.1(111608) BS_WJ9H4NZZ ARRIBA frameshift 9 1 medium [],translocation CRTAC1 NA IFFO2 AL137127.1 NA NA NA NA NA +4:175812191 4:183632723 GPM6A--AC107214.2(115196)/RWDD4(6912) BS_WJ9H4NZZ ARRIBA frameshift 6 0 medium [],inversion GPM6A NA AC107214.2 RWDD4 NA NA NA NA NA +6:102035566 6:124283005 GRIK2--NKAIN2 BS_WJ9H4NZZ ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr6:21.73Mb]],deletion GRIK2 NA NKAIN2 NA NA Oncogene NA NA NA +2:17878950 2:15928979 KCNS3--MYCNOS BS_WJ9H4NZZ ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr2:1.94Mb]],inversion KCNS3 NA MYCNOS NA NA NA NA NA NA +2:17878950 2:15928979 KCNS3--MYCNUT BS_WJ9H4NZZ ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr2:1.94Mb]],inversion/3'-3' KCNS3 NA MYCNUT NA NA NA NA NA NA +7:152358587 19:5222220 KMT2C--PTPRS BS_WJ9H4NZZ ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr7--chr19]],translocation KMT2C NA PTPRS NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WJ9H4NZZ ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:71555208 4:72997069 SLC4A4--RNU4ATAC9P(31766)/RNU6ATAC5P(29679) BS_WJ9H4NZZ ARRIBA frameshift 3 0 high [],deletion SLC4A4 NA RNU4ATAC9P RNU6ATAC5P NA NA NA NA NA +4:71555208 4:72969221 SLC4A4--RNU4ATAC9P(3918)/RNU6ATAC5P(57527) BS_WJ9H4NZZ ARRIBA frameshift 2 0 medium [],deletion SLC4A4 NA RNU4ATAC9P RNU6ATAC5P NA NA NA NA NA +2:219477445 10:57101702 SPEG--SNORD2(505671)/MIR3924(202777) BS_WJ9H4NZZ ARRIBA frameshift 3 0 high [],translocation SPEG NA SNORD2 MIR3924 Kinase, Kinase NA NA NA NA +22:29287134 11:128805366 EWSR1--FLI1 BS_WJGFDRWK ARRIBA in-frame 13 0 high [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]],translocation EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +22:29287134 11:128805366 EWSR1--FLI1 BS_WJGFDRWK STARFUSION in-frame 15 0 NA [CCLE,Klijn_CellLines,ChimerKB,ChimerSeq,FA_CancerSupp,ChimerPub,Mitelman,Cosmic,INTERCHROMOSOMAL[chr22--chr11]] EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +17:1067077 13:26685688 ABR--WASF3 BS_WKESC3XN ARRIBA frameshift 27 6 high [INTERCHROMOSOMAL[chr17--chr13]],translocation ABR NA WASF3 NA Oncogene NA NA NA NA +17:1067077 13:26685688 ABR--WASF3 BS_WKESC3XN STARFUSION frameshift 27 6 NA [INTERCHROMOSOMAL[chr17--chr13]] ABR NA WASF3 NA Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WKESC3XN ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WKESC3XN ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:181037 20:43618940 AL627309.5(7175)/FO538757.2(1659)--IFT52 BS_WKESC3XN ARRIBA other 11 0 high [],translocation AL627309.5 FO538757.2 IFT52 NA NA NA NA NA NA +1:235160511 1:190487896 ARID4B--AL391645.1 BS_WKESC3XN ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr1:44.64Mb]],deletion/5'-5' ARID4B NA AL391645.1 NA NA NA NA NA NA +8:130358017 Y:9647248 ASAP1--TSPY16P(6532)/AC017019.1(17981) BS_WKESC3XN ARRIBA frameshift 16 3 high [],translocation ASAP1 NA TSPY16P AC017019.1 NA NA NA NA NA +1:200815644 1:185389746 CAMSAP2--GS1-279B7.1(54707)/RNU7-183P(44498) BS_WKESC3XN ARRIBA frameshift 9 1 high [],inversion CAMSAP2 NA GS1-279B7.1 RNU7-183P NA NA NA NA NA +9:113255993 9:111938013 CDC26--UGCG(2644)/RNU6-710P(58622) BS_WKESC3XN ARRIBA other 3 0 medium [],inversion CDC26 NA UGCG RNU6-710P NA NA NA NA NA +1:214641812 1:211514340 CENPF--RD3(21423)/AC105275.1(21423)/SLC30A1(57228) BS_WKESC3XN ARRIBA frameshift 25 2 medium [],inversion CENPF NA RD3 AC105275.1 Oncogene NA NA NA NA +17:1455877 13:21539688 CRK--MICU2 BS_WKESC3XN ARRIBA in-frame 37 6 high [INTERCHROMOSOMAL[chr17--chr13]],translocation CRK NA MICU2 NA Oncogene NA NA NA NA +17:1455877 13:21539688 CRK--MICU2 BS_WKESC3XN STARFUSION in-frame 34 6 NA [INTERCHROMOSOMAL[chr17--chr13]] CRK NA MICU2 NA Oncogene NA NA NA NA +17:8239794 17:3134837 CTC1--OR1G1(7256)/AC090282.1(132) BS_WKESC3XN ARRIBA other 3 1 medium [],deletion CTC1 NA OR1G1 AC090282.1 NA NA NA NA NA +10:35079800 1:196199367 CUL2--LINC01724(138294)/KCNT2(26412) BS_WKESC3XN ARRIBA other 6 1 medium [],translocation CUL2 NA LINC01724 KCNT2 TumorSuppressorGene NA NA NA NA +1:197772868 1:168714109 DENND1B--DPT BS_WKESC3XN ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr1:28.78Mb]],inversion/5'-5' DENND1B NA DPT NA NA Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_WKESC3XN ARRIBA frameshift 10 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +7:112206102 7:88075626 DOCK4--ADAM22 BS_WKESC3XN ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr7:23.52Mb]],inversion DOCK4 NA ADAM22 NA NA NA NA NA NA +8:26634900 8:22927720 DPYSL2--PEBP4 BS_WKESC3XN ARRIBA frameshift 33 8 high [INTRACHROMOSOMAL[chr8:3.51Mb]],inversion DPYSL2 NA PEBP4 NA NA NA NA NA NA +8:26634900 8:22920310 DPYSL2--PEBP4 BS_WKESC3XN ARRIBA frameshift 3 2 medium [INTRACHROMOSOMAL[chr8:3.51Mb]],inversion DPYSL2 NA PEBP4 NA NA NA NA NA NA +8:26634900 8:22927720 DPYSL2--PEBP4 BS_WKESC3XN STARFUSION frameshift 33 11 NA [INTRACHROMOSOMAL[chr8:3.51Mb]] DPYSL2 NA PEBP4 NA NA NA NA NA NA +10:32953593 1:200581294 ITGB1--KIF14 BS_WKESC3XN ARRIBA other 12 2 high [INTERCHROMOSOMAL[chr10--chr1]],translocation ITGB1 NA KIF14 NA TumorSuppressorGene Oncogene NA NA NA +10:32958145 1:200581294 ITGB1--KIF14 BS_WKESC3XN ARRIBA other 13 1 high [INTERCHROMOSOMAL[chr10--chr1]],translocation ITGB1 NA KIF14 NA TumorSuppressorGene Oncogene NA NA NA +1:196608215 1:183207881 KCNT2--LAMC2 BS_WKESC3XN ARRIBA frameshift 14 0 high [INTRACHROMOSOMAL[chr1:12.98Mb]],inversion KCNT2 NA LAMC2 NA NA NA NA NA NA +1:200569911 1:206303281 KIF14--SRGAP2 BS_WKESC3XN ARRIBA in-frame 19 1 high [INTRACHROMOSOMAL[chr1:5.58Mb]],inversion KIF14 NA SRGAP2 NA Oncogene NA NA NA NA +1:200569911 1:206303281 KIF14--SRGAP2 BS_WKESC3XN STARFUSION in-frame 20 1 NA [INTRACHROMOSOMAL[chr1:5.58Mb]] KIF14 NA SRGAP2 NA Oncogene NA NA NA NA +1:206685508 10:27481527 MAPKAPK2--PTCHD3(67159)/RAB18(22647) BS_WKESC3XN ARRIBA frameshift 10 0 high [],translocation MAPKAPK2 NA PTCHD3 RAB18 Kinase, Oncogene, Kinase NA NA NA NA +22:18001393 22:18068688 MICAL3--LINC01634(30720)/AC016027.1(7839) BS_WKESC3XN ARRIBA other 5 0 medium [],duplication MICAL3 NA LINC01634 AC016027.1 NA NA NA NA NA +1:198937226 10:34269899 MIR181A1HG--PARD3 BS_WKESC3XN ARRIBA other 33 5 high [INTERCHROMOSOMAL[chr1--chr10]],translocation MIR181A1HG NA PARD3 NA NA NA NA NA NA +1:198937226 10:34269899 MIR181A1HG--PARD3 BS_WKESC3XN STARFUSION other 33 5 NA [INTERCHROMOSOMAL[chr1--chr10]] MIR181A1HG NA PARD3 NA NA NA NA NA NA +22:46080655 22:45297237 MIRLET7BHG--UPK3A(1363)/FAM118A(11731) BS_WKESC3XN ARRIBA other 2 1 high [],inversion MIRLET7BHG NA UPK3A FAM118A NA NA NA NA NA +7:108456243 7:89575171 NRCAM--AC002383.1(80909)/RNU6-274P(179449) BS_WKESC3XN ARRIBA other 3 0 medium [],inversion NRCAM NA AC002383.1 RNU6-274P TumorSuppressorGene, Oncogene NA NA NA NA +17:5419354 17:9674891 NUP88--USP43 BS_WKESC3XN ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr17:4.22Mb]],inversion NUP88 NA USP43 NA NA NA NA NA NA +17:5419354 17:9680231 NUP88--USP43 BS_WKESC3XN ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr17:4.22Mb]],inversion NUP88 NA USP43 NA NA NA NA NA NA +10:34269657 10:33430986 PARD3--AL353600.1(89081)/AC018980.1(147945) BS_WKESC3XN ARRIBA frameshift 7 0 high [],deletion PARD3 NA AL353600.1 AC018980.1 NA NA NA NA NA +7:72891110 7:81687576 POM121--AC008163.1 BS_WKESC3XN ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:8.54Mb]],inversion POM121 NA AC008163.1 NA NA NA NA NA NA +7:77571186 7:132298222 PTPN12--PLXNA4 BS_WKESC3XN ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr7:54.48Mb]],inversion PTPN12 NA PLXNA4 NA TumorSuppressorGene NA NA NA NA +7:77581503 7:132298222 PTPN12--PLXNA4 BS_WKESC3XN ARRIBA in-frame 3 1 high [INTRACHROMOSOMAL[chr7:54.48Mb]],inversion PTPN12 NA PLXNA4 NA TumorSuppressorGene NA NA NA NA +7:77537645 7:132298222 PTPN12--PLXNA4 BS_WKESC3XN ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:54.48Mb]],inversion PTPN12 NA PLXNA4 NA TumorSuppressorGene NA NA NA NA +1:235160511 1:190487896 RBM34--AL391645.1 BS_WKESC3XN ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr1:44.64Mb]],deletion/5'-5' RBM34 NA AL391645.1 NA Oncogene NA NA NA NA +17:5421466 17:4889647 RPAIN--MINK1 BS_WKESC3XN ARRIBA in-frame 41 0 high [INTRACHROMOSOMAL[chr17:0.52Mb]],duplication RPAIN NA MINK1 NA NA Kinase NA NA NA +17:5421466 17:4889647 RPAIN--MINK1 BS_WKESC3XN STARFUSION in-frame 48 1 NA [INTRACHROMOSOMAL[chr17:0.52Mb]] RPAIN NA MINK1 NA NA Kinase NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WKESC3XN ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:77688827 1:196760392 RSF1--CFH(12888)/CFHR3(14403) BS_WKESC3XN ARRIBA frameshift 4 0 medium [],translocation RSF1 NA CFH CFHR3 Oncogene NA NA NA NA +1:232629869 1:203770828 SIPA1L2(68311)/RNU6-1211P(70335)--LAX1 BS_WKESC3XN ARRIBA other 17 3 high [],inversion SIPA1L2 RNU6-1211P LAX1 NA NA NA NA NA NA +17:2212412 17:1268390 SMG6--AC144836.1(14390)/BHLHA9(2169) BS_WKESC3XN ARRIBA other 5 2 medium [],inversion SMG6 NA AC144836.1 BHLHA9 Oncogene NA NA TranscriptionFactor NA +1:204073711 1:208822170 SOX13--LINC01717(88986)/LINC01774(150284) BS_WKESC3XN ARRIBA other 2 1 high [],inversion SOX13 NA LINC01717 LINC01774 TranscriptionFactor NA NA NA NA +1:206303473 1:200581294 SRGAP2--KIF14 BS_WKESC3XN ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:5.58Mb]],inversion SRGAP2 NA KIF14 NA NA Oncogene NA NA NA +1:144905974 1:198567536 SRGAP2B--ATP6V1G3(26591)/AL157402.1(30188) BS_WKESC3XN ARRIBA frameshift 4 0 low [],duplication SRGAP2B NA ATP6V1G3 AL157402.1 NA NA NA NA NA +4:5168450 11:69303766 STK32B--IFITM9P BS_WKESC3XN ARRIBA frameshift 5 2 high [INTERCHROMOSOMAL[chr4--chr11]],translocation STK32B NA IFITM9P NA Kinase NA NA NA NA +17:9378552 17:1662153 STX8--PRPF8 BS_WKESC3XN ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr17:7.57Mb]],deletion STX8 NA PRPF8 NA NA NA NA NA NA +1:185168398 1:198542956 SWT1--ATP6V1G3(2011)/AL157402.1(54768) BS_WKESC3XN ARRIBA frameshift 3 1 high [],inversion SWT1 NA ATP6V1G3 AL157402.1 NA NA NA NA NA +1:1256992 1:91418512 UBE2J2--HFM1(13643)/CDC7(82381) BS_WKESC3XN ARRIBA frameshift 3 0 medium [],inversion UBE2J2 NA HFM1 CDC7 NA NA NA Kinase, Kinase NA +17:560426 17:5487066 VPS53--MIS12 BS_WKESC3XN ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr17:4.76Mb]],duplication/5'-5' VPS53 NA MIS12 NA TumorSuppressorGene NA NA NA NA +13:26671989 17:11902719 WASF3--DNAH9 BS_WKESC3XN ARRIBA in-frame 27 3 high [INTERCHROMOSOMAL[chr13--chr17]],translocation WASF3 NA DNAH9 NA NA Oncogene NA NA NA +13:26671989 17:11902719 WASF3--DNAH9 BS_WKESC3XN STARFUSION in-frame 28 5 NA [INTERCHROMOSOMAL[chr13--chr17]] WASF3 NA DNAH9 NA NA Oncogene NA NA NA +1:203830203 1:214639921 ZBED6--CENPF BS_WKESC3XN ARRIBA in-frame 23 2 high [INTRACHROMOSOMAL[chr1:10.75Mb]],deletion ZBED6 NA CENPF NA TranscriptionFactor Oncogene NA NA NA +1:203830203 1:214639921 ZBED6--CENPF BS_WKESC3XN STARFUSION in-frame 24 2 NA [INTRACHROMOSOMAL[chr1:10.75Mb]] ZBED6 NA CENPF NA TranscriptionFactor Oncogene NA NA NA +1:203830203 1:214639921 ZC3H11A--CENPF BS_WKESC3XN ARRIBA in-frame 23 2 high [INTRACHROMOSOMAL[chr1:10.75Mb]],deletion ZC3H11A NA CENPF NA NA Oncogene NA NA NA +1:203830203 1:214639921 ZC3H11A--CENPF BS_WKESC3XN STARFUSION in-frame 24 2 NA [INTRACHROMOSOMAL[chr1:10.75Mb]] ZC3H11A NA CENPF NA NA Oncogene NA NA NA +4:145902166 4:146182912 ZNF827--LSM6 BS_WKESC3XN ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr4:0.24Mb]],inversion ZNF827 NA LSM6 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WMEHNDSK ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WMEHNDSK ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:131077232 8:133212864 ADCY8(34806)/AC087341.1(53156)--WISP1 BS_WMEHNDSK ARRIBA other 1 1 medium [],deletion ADCY8 AC087341.1 WISP1 NA NA NA NA NA NA +14:49586873 14:20343377 AL139099.5--AL355075.4 BS_WMEHNDSK STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +8:130443460 8:124941463 ASAP1--LINC00964 BS_WMEHNDSK ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr8:5.10Mb]],inversion ASAP1 NA LINC00964 NA NA NA NA NA NA +8:130401885 8:124941463 ASAP1--LINC00964 BS_WMEHNDSK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:5.10Mb]],inversion ASAP1 NA LINC00964 NA NA NA NA NA NA +8:130358017 8:133284329 ASAP1--NDRG1 BS_WMEHNDSK ARRIBA in-frame 601 131 high [INTRACHROMOSOMAL[chr8:2.79Mb]],duplication ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +8:130401885 8:133284329 ASAP1--NDRG1 BS_WMEHNDSK ARRIBA frameshift 47 15 high [INTRACHROMOSOMAL[chr8:2.79Mb]],duplication ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +8:130358017 8:133264652 ASAP1--NDRG1 BS_WMEHNDSK ARRIBA in-frame 48 22 medium [INTRACHROMOSOMAL[chr8:2.79Mb]],duplication ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +8:130401885 8:133280267 ASAP1--NDRG1 BS_WMEHNDSK ARRIBA frameshift 1 6 medium [INTRACHROMOSOMAL[chr8:2.79Mb]],duplication ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +8:130443460 8:133284329 ASAP1--NDRG1 BS_WMEHNDSK ARRIBA other 2 4 medium [INTRACHROMOSOMAL[chr8:2.79Mb]],duplication ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +8:130401885 8:133264652 ASAP1--NDRG1 BS_WMEHNDSK ARRIBA frameshift 2 3 medium [INTRACHROMOSOMAL[chr8:2.79Mb]],duplication ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +8:130443460 8:133264652 ASAP1--NDRG1 BS_WMEHNDSK ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr8:2.79Mb]],duplication ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +8:130358017 8:133284329 ASAP1--NDRG1 BS_WMEHNDSK STARFUSION in-frame 1843 159 NA [INTRACHROMOSOMAL[chr8:2.79Mb]] ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +8:131904322 8:129839900 EFR3A--AC022973.4 BS_WMEHNDSK ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr8:2.06Mb]],duplication EFR3A NA AC022973.4 NA NA NA NA NA NA +8:132003285 8:76163014 EFR3A--HNF4G(596171)/RNU2-54P(102529) BS_WMEHNDSK ARRIBA frameshift 13 2 high [],inversion EFR3A NA HNF4G RNU2-54P NA TranscriptionFactor NA NA NA +2:211619177 2:211657828 ERBB4--ERBB4 BS_WMEHNDSK ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:1.16Mb]],duplication/non-canonical_splicing ERBB4 NA ERBB4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +6:65490594 6:65495993 EYS--EYS BS_WMEHNDSK ARRIBA frameshift 20 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +8:129850575 8:131030635 FAM49B--ADCY8 BS_WMEHNDSK ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr8:0.76Mb]],duplication FAM49B NA ADCY8 NA NA NA NA NA NA +8:130016370 8:131077121 FAM49B--ADCY8(34695)/AC087341.1(53267) BS_WMEHNDSK ARRIBA other 3 1 high [],inversion FAM49B NA ADCY8 AC087341.1 NA NA NA NA NA +8:135457954 8:136515966 KHDRBS3--AC013546.1 BS_WMEHNDSK ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr8:0.83Mb]],deletion KHDRBS3 NA AC013546.1 NA NA NA NA NA NA +8:136537059 8:136529795 LINC02055--AC013546.1 BS_WMEHNDSK ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:0.00Mb],LOCAL_REARRANGEMENT:+:[922]],duplication LINC02055 NA AC013546.1 NA NA NA NA NA NA +8:136537059 8:136515966 LINC02055--AC013546.1 BS_WMEHNDSK ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:0.00Mb],LOCAL_REARRANGEMENT:+:[922]],duplication LINC02055 NA AC013546.1 NA NA NA NA NA NA +8:136537059 8:76616451 LINC02055--ZFHX4-AS1 BS_WMEHNDSK ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr8:59.85Mb]],inversion LINC02055 NA ZFHX4-AS1 NA NA NA NA NA NA +8:136619345 8:76616451 LINC02055--ZFHX4-AS1 BS_WMEHNDSK ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr8:59.85Mb]],inversion LINC02055 NA ZFHX4-AS1 NA NA NA NA NA NA +8:71844422 8:130655695 MSC-AS1--AC090987.1 BS_WMEHNDSK ARRIBA other 6 2 high [INTRACHROMOSOMAL[chr8:58.48Mb]],inversion MSC-AS1 NA AC090987.1 NA NA NA NA NA NA +8:71844422 8:130599071 MSC-AS1--AC090987.1 BS_WMEHNDSK ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr8:58.48Mb]],inversion MSC-AS1 NA AC090987.1 NA NA NA NA NA NA +8:124699526 8:127420963 MTSS1--CASC8 BS_WMEHNDSK ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr8:2.56Mb]],duplication MTSS1 NA CASC8 NA TumorSuppressorGene NA NA NA NA +8:124699526 8:127290060 MTSS1--CASC8 BS_WMEHNDSK ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr8:2.56Mb]],duplication MTSS1 NA CASC8 NA TumorSuppressorGene NA NA NA NA +8:124663208 8:127546314 MTSS1--CASC8(64175)/CASC11(140029) BS_WMEHNDSK ARRIBA other 4 1 medium [],duplication MTSS1 NA CASC8 CASC11 TumorSuppressorGene NA NA NA NA +8:124556450 8:138390962 MTSS1--FAM135B BS_WMEHNDSK ARRIBA other 9 2 medium [INTRACHROMOSOMAL[chr8:13.40Mb]],inversion/5'-5' MTSS1 NA FAM135B NA TumorSuppressorGene CosmicCensus NA NA NA +8:124727884 8:134509749 MTSS1--ZFAT BS_WMEHNDSK ARRIBA frameshift 600 90 high [INTRACHROMOSOMAL[chr8:9.75Mb]],duplication MTSS1 NA ZFAT NA TumorSuppressorGene TranscriptionFactor NA NA NA +8:124727884 8:134478721 MTSS1--ZFAT BS_WMEHNDSK ARRIBA in-frame 140 24 high [INTRACHROMOSOMAL[chr8:9.75Mb]],duplication MTSS1 NA ZFAT NA TumorSuppressorGene TranscriptionFactor NA NA NA +8:124727884 8:134509749 MTSS1--ZFAT BS_WMEHNDSK STARFUSION frameshift 761 101 NA [INTRACHROMOSOMAL[chr8:9.75Mb]] MTSS1 NA ZFAT NA TumorSuppressorGene TranscriptionFactor NA NA NA +8:124727884 8:134478721 MTSS1--ZFAT BS_WMEHNDSK STARFUSION in-frame 148 101 NA [INTRACHROMOSOMAL[chr8:9.75Mb]] MTSS1 NA ZFAT NA TumorSuppressorGene TranscriptionFactor NA NA NA +8:127794734 8:71702215 PVT1_1--AC009446.1 BS_WMEHNDSK ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr8:56.09Mb]],duplication PVT1_1 NA AC009446.1 NA NA NA NA NA NA +8:127794734 8:138368002 PVT1_1--FAM135B BS_WMEHNDSK ARRIBA other 18 1 medium [INTRACHROMOSOMAL[chr8:10.34Mb]],inversion PVT1_1 NA FAM135B NA NA CosmicCensus NA NA NA +8:127794734 8:138310920 PVT1_1--FAM135B BS_WMEHNDSK ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:10.34Mb]],inversion PVT1_1 NA FAM135B NA NA CosmicCensus NA NA NA +8:127794734 8:138368002 PVT1_1--FAM135B BS_WMEHNDSK STARFUSION other 22 1 NA [INTRACHROMOSOMAL[chr8:10.34Mb]] PVT1_1 NA FAM135B NA NA CosmicCensus NA NA NA +8:127794734 8:134504017 PVT1_1--ZFAT BS_WMEHNDSK ARRIBA other 499 78 high [INTRACHROMOSOMAL[chr8:6.68Mb]],deletion/5'-5' PVT1_1 NA ZFAT NA NA TranscriptionFactor NA NA NA +8:127794734 8:134478721 PVT1_1--ZFAT BS_WMEHNDSK ARRIBA other 12 2 medium [INTRACHROMOSOMAL[chr8:6.68Mb]],inversion PVT1_1 NA ZFAT NA NA TranscriptionFactor NA NA NA +8:127794734 8:134590355 PVT1_1--ZFAT BS_WMEHNDSK ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:6.68Mb]],inversion PVT1_1 NA ZFAT NA NA TranscriptionFactor NA NA NA +8:127794734 8:134509749 PVT1_1--ZFAT BS_WMEHNDSK ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:6.68Mb]],inversion PVT1_1 NA ZFAT NA NA TranscriptionFactor NA NA NA +8:127794734 8:134478721 PVT1_1--ZFAT BS_WMEHNDSK STARFUSION other 13 2 NA [INTRACHROMOSOMAL[chr8:6.68Mb]] PVT1_1 NA ZFAT NA NA TranscriptionFactor NA NA NA +8:127794734 8:71702215 PVT1--AC009446.1 BS_WMEHNDSK ARRIBA other 3 1 low [INTRACHROMOSOMAL[chr8:56.09Mb]],duplication PVT1 NA AC009446.1 NA Oncogene NA NA NA NA +8:127794734 8:138368002 PVT1--FAM135B BS_WMEHNDSK ARRIBA other 18 1 medium [INTRACHROMOSOMAL[chr8:10.03Mb]],inversion PVT1 NA FAM135B NA Oncogene CosmicCensus NA NA NA +8:127796071 8:138368002 PVT1--FAM135B BS_WMEHNDSK ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr8:10.03Mb]],inversion PVT1 NA FAM135B NA Oncogene CosmicCensus NA NA NA +8:127794734 8:138310920 PVT1--FAM135B BS_WMEHNDSK ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:10.03Mb]],inversion PVT1 NA FAM135B NA Oncogene CosmicCensus NA NA NA +8:127794734 8:138368002 PVT1--FAM135B BS_WMEHNDSK STARFUSION other 22 1 NA [INTRACHROMOSOMAL[chr8:10.03Mb]] PVT1 NA FAM135B NA Oncogene CosmicCensus NA NA NA +8:127890998 8:76475946 PVT1--LINC01111 BS_WMEHNDSK ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr8:51.27Mb]],duplication PVT1 NA LINC01111 NA Oncogene NA NA NA NA +8:127939676 8:76475946 PVT1--LINC01111 BS_WMEHNDSK ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr8:51.27Mb]],duplication PVT1 NA LINC01111 NA Oncogene NA NA NA NA +8:127939676 8:76433641 PVT1--LINC01111 BS_WMEHNDSK ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr8:51.27Mb]],duplication PVT1 NA LINC01111 NA Oncogene NA NA NA NA +8:127939676 8:76518800 PVT1--LINC01111 BS_WMEHNDSK ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:51.27Mb]],duplication PVT1 NA LINC01111 NA Oncogene NA NA NA NA +8:127890998 8:76518800 PVT1--LINC01111 BS_WMEHNDSK ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:51.27Mb]],duplication PVT1 NA LINC01111 NA Oncogene NA NA NA NA +8:127890998 8:76433641 PVT1--LINC01111 BS_WMEHNDSK ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr8:51.27Mb]],duplication PVT1 NA LINC01111 NA Oncogene NA NA NA NA +8:127855319 8:133264652 PVT1--NDRG1 BS_WMEHNDSK ARRIBA other 1 1 medium [ChimerPub,INTRACHROMOSOMAL[chr8:5.14Mb]],inversion PVT1 NA NDRG1 NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +8:127794734 8:133284329 PVT1--NDRG1 BS_WMEHNDSK ARRIBA other 1 0 low [ChimerPub,INTRACHROMOSOMAL[chr8:5.14Mb]],inversion PVT1 NA NDRG1 NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +8:127794734 8:134504017 PVT1--ZFAT BS_WMEHNDSK ARRIBA other 499 83 high [INTRACHROMOSOMAL[chr8:6.38Mb]],deletion/5'-5' PVT1 NA ZFAT NA Oncogene TranscriptionFactor NA NA NA +8:127794734 8:134478721 PVT1--ZFAT BS_WMEHNDSK ARRIBA other 13 2 medium [INTRACHROMOSOMAL[chr8:6.38Mb]],inversion PVT1 NA ZFAT NA Oncogene TranscriptionFactor NA NA NA +8:127796008 8:134478721 PVT1--ZFAT BS_WMEHNDSK ARRIBA other 3 2 medium [INTRACHROMOSOMAL[chr8:6.38Mb]],inversion PVT1 NA ZFAT NA Oncogene TranscriptionFactor NA NA NA +8:127794734 8:134590355 PVT1--ZFAT BS_WMEHNDSK ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:6.38Mb]],inversion PVT1 NA ZFAT NA Oncogene TranscriptionFactor NA NA NA +8:127794734 8:134509749 PVT1--ZFAT BS_WMEHNDSK ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:6.38Mb]],inversion PVT1 NA ZFAT NA Oncogene TranscriptionFactor NA NA NA +8:127794734 8:134478721 PVT1--ZFAT BS_WMEHNDSK STARFUSION other 13 2 NA [INTRACHROMOSOMAL[chr8:6.38Mb]] PVT1 NA ZFAT NA Oncogene TranscriptionFactor NA NA NA +8:124475290 8:125357219 RNF139--NSMCE2 BS_WMEHNDSK ARRIBA in-frame 2 1 low [INTRACHROMOSOMAL[chr8:0.60Mb]],deletion RNF139 NA NSMCE2 NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WMEHNDSK ARRIBA other 12 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:17878208 11:18040788 SERGEF--TPH1 BS_WMEHNDSK ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[4402]],duplication SERGEF NA TPH1 NA NA NA NA NA NA +11:17959470 11:18040788 SERGEF--TPH1 BS_WMEHNDSK ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[4402]],duplication SERGEF NA TPH1 NA NA NA NA NA NA +11:17988597 11:18040788 SERGEF--TPH1 BS_WMEHNDSK ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[4402]],duplication SERGEF NA TPH1 NA NA NA NA NA NA +16:70526726 19:2520725 SF3B3--GNG7 BS_WMEHNDSK ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr16--chr19]],translocation SF3B3 NA GNG7 NA NA NA NA NA NA +8:124999694 8:128096518 SQLE--PVT1 BS_WMEHNDSK ARRIBA frameshift 8 0 medium [INTRACHROMOSOMAL[chr8:2.77Mb]],deletion SQLE NA PVT1 NA NA Oncogene NA NA NA +8:124999694 8:125453023 SQLE--TRIB1(14618)/AC091114.1(13916) BS_WMEHNDSK ARRIBA frameshift 5 1 medium [],deletion SQLE NA TRIB1 AC091114.1 NA Kinase NA NA NA +8:133571693 8:127890589 ST3GAL1--PVT1 BS_WMEHNDSK ARRIBA other 22 3 medium [INTRACHROMOSOMAL[chr8:5.35Mb]],inversion ST3GAL1 NA PVT1 NA NA Oncogene NA NA NA +8:133570110 8:127890589 ST3GAL1--PVT1 BS_WMEHNDSK ARRIBA other 1 4 medium [INTRACHROMOSOMAL[chr8:5.35Mb]],inversion ST3GAL1 NA PVT1 NA NA Oncogene NA NA NA +8:133571693 8:127890589 ST3GAL1--PVT1 BS_WMEHNDSK STARFUSION other 22 4 NA [INTRACHROMOSOMAL[chr8:5.35Mb]] ST3GAL1 NA PVT1 NA NA Oncogene NA NA NA +8:133571693 8:127890589 ST3GAL1--PVT1_3 BS_WMEHNDSK STARFUSION other 18 4 NA [INTRACHROMOSOMAL[chr8:5.56Mb]] ST3GAL1 NA PVT1_3 NA NA NA NA NA NA +8:124495472 8:134476957 TATDN1--AC105180.1(156510)/ZFAT(831) BS_WMEHNDSK ARRIBA frameshift 15 2 medium [],duplication TATDN1 NA AC105180.1 ZFAT NA NA NA TranscriptionFactor NA +1:216321883 1:216327654 USH2A--USH2A BS_WMEHNDSK ARRIBA frameshift 9 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +8:134637461 8:136293250 ZFAT--AC079098.1(127128)/AC013546.1(196198) BS_WMEHNDSK ARRIBA frameshift 14 2 high [],inversion ZFAT NA AC079098.1 AC013546.1 TranscriptionFactor NA NA NA NA +8:134483272 8:134382580 ZFAT--AC105180.1(62133)/ZFAT(95208) BS_WMEHNDSK ARRIBA other 97 34 high [],inversion ZFAT NA AC105180.1 ZFAT TranscriptionFactor NA NA TranscriptionFactor NA +8:134501829 8:127733959 ZFAT--CASC11 BS_WMEHNDSK ARRIBA other 6 3 medium [INTRACHROMOSOMAL[chr8:6.74Mb]],deletion ZFAT NA CASC11 NA TranscriptionFactor NA NA NA NA +8:134509996 8:76041830 ZFAT--HNF4G(474987)/RNU2-54P(223713) BS_WMEHNDSK ARRIBA other 14 1 medium [],inversion ZFAT NA HNF4G RNU2-54P TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WRHDP7WF ARRIBA other 20 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WRHDP7WF ARRIBA other 20 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_WRHDP7WF ARRIBA other 7 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +4:16426440 4:16320065 AC097515.1--TAPT1-AS1 BS_WRHDP7WF ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_WRHDP7WF ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_WRHDP7WF ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93593359 15:93557472 AC110023.1--AC091078.1 BS_WRHDP7WF ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +20:46492682 20:46504740 AL031686.1--ZNF334 BS_WRHDP7WF ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46474501 20:46509751 AL031686.1--ZNF334 BS_WRHDP7WF ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +20:46485529 20:46504740 AL031686.1--ZNF334 BS_WRHDP7WF ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.00Mb],LOCAL_REARRANGEMENT:-:[2899]],duplication AL031686.1 NA ZNF334 NA NA TranscriptionFactor NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_WRHDP7WF ARRIBA other 11 0 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_WRHDP7WF ARRIBA other 23 3 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +17:46152904 17:46172232 KANSL1--KANSL1 BS_WRHDP7WF ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing KANSL1 NA KANSL1 NA NA NA NA NA NA +8:10480192 8:10446339 LINCR-0001--AC104964.2(8027)/LINCR-0001(28226) BS_WRHDP7WF ARRIBA other 3 1 high [],duplication LINCR-0001 NA AC104964.2 LINCR-0001 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WRHDP7WF ARRIBA other 20 0 high [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:26764737 4:26637211 TBC1D19(9386)/STIM2(92941)--TBC1D19 BS_WRHDP7WF ARRIBA other 1 0 low [],duplication TBC1D19 STIM2 TBC1D19 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_WRHDP7WF ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +5:90848821 5:90805284 ADGRV1--ADGRV1 BS_WRQHPSXQ ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +4:113353556 4:113517657 ANK2--CAMK2D BS_WRQHPSXQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.07Mb],LOCAL_INVERSION:+:-:[67292]],duplication/3'-3' ANK2 NA CAMK2D NA NA Kinase, Oncogene, Kinase NA NA NA +11:103893875 11:104092948 AP002989.1--PDGFD BS_WRQHPSXQ ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11915]],duplication AP002989.1 NA PDGFD NA NA NA NA NA NA +11:103893875 11:104000255 AP002989.1--PDGFD BS_WRQHPSXQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11915]],duplication AP002989.1 NA PDGFD NA NA NA NA NA NA +11:103893875 11:104000237 AP002989.1--PDGFD BS_WRQHPSXQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11915]],duplication AP002989.1 NA PDGFD NA NA NA NA NA NA +11:103904680 11:104000255 AP002989.1(9409)/PDGFD(2506)--PDGFD BS_WRQHPSXQ ARRIBA other 6 0 high [],duplication AP002989.1 PDGFD PDGFD NA NA NA NA NA NA +10:27860625 10:27944962 ARMC4--ARMC4 BS_WRQHPSXQ ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.19Mb]],duplication/non-canonical_splicing ARMC4 NA ARMC4 NA NA NA NA NA NA +9:119208719 9:119214155 BRINP1--BRINP1 BS_WRQHPSXQ ARRIBA frameshift 7 3 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +4:113759320 4:113381457 CAMK2D--ANK2 BS_WRQHPSXQ ARRIBA frameshift 1 0 low [ChimerSeq,INTRACHROMOSOMAL[chr4:0.07Mb],LOCAL_INVERSION:-:+:[67292]],inversion CAMK2D NA ANK2 NA Kinase, Oncogene, Kinase NA NA NA TCGAFusion +X:36205110 X:36065643 CFAP47--CFAP47 BS_WRQHPSXQ ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.47Mb]],duplication/non-canonical_splicing CFAP47 NA CFAP47 NA NA NA NA NA NA +1:62618706 1:62648544 DOCK7--DOCK7 BS_WRQHPSXQ ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing DOCK7 NA DOCK7 NA NA NA NA NA NA +5:169881368 5:169884816 FAM196B--FAM196B BS_WRQHPSXQ ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.12Mb]],duplication/non-canonical_splicing FAM196B NA FAM196B NA NA NA NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_WRQHPSXQ ARRIBA frameshift 21 3 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +3:178859489 3:178965496 KCNMB2-AS1--KCNMB2-AS1(105091)/ZMAT3(51727) BS_WRQHPSXQ ARRIBA other 2 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178859489 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_WRQHPSXQ ARRIBA other 2 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +8:89605366 8:89617156 KRT8P4(190295)/AF117829.1(4043)--AF117829.1 BS_WRQHPSXQ ARRIBA other 1 0 low [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +8:89418044 8:89725641 KRT8P4(2973)/AF117829.1(191365)--AF117829.1 BS_WRQHPSXQ ARRIBA other 2 0 medium [],duplication KRT8P4 AF117829.1 AF117829.1 NA NA NA NA NA NA +14:59475869 14:59565275 L3HYPDH--CCDC175 BS_WRQHPSXQ ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59540746 L3HYPDH--CCDC175 BS_WRQHPSXQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59479182 14:59543454 L3HYPDH--CCDC175 BS_WRQHPSXQ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +11:104544699 11:104545149 LINC02552--LINC02552 BS_WRQHPSXQ ARRIBA other 8 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.16Mb]],duplication/non-canonical_splicing LINC02552 NA LINC02552 NA NA NA NA NA NA +1:70107826 1:70053026 LRRC7--LRRC7 BS_WRQHPSXQ ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.58Mb]],duplication/non-canonical_splicing LRRC7 NA LRRC7 NA NA NA NA NA NA +X:150473802 X:150469745 MAMLD1--MAMLD1 BS_WRQHPSXQ ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing MAMLD1 NA MAMLD1 NA NA NA NA NA NA +12:44607169 12:44875900 NELL2--NELL2 BS_WRQHPSXQ ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +1:61914664 1:61856030 PATJ--PATJ BS_WRQHPSXQ ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.44Mb]],duplication/non-canonical_splicing PATJ NA PATJ NA Oncogene Oncogene NA NA NA +15:69677640 15:69563116 PCAT29--DRAIC BS_WRQHPSXQ ARRIBA other 5 2 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +15:69684442 15:69563116 PCAT29--DRAIC BS_WRQHPSXQ ARRIBA other 2 2 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +15:69677640 15:69548354 PCAT29--DRAIC BS_WRQHPSXQ ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20689]],duplication PCAT29 NA DRAIC NA NA NA NA NA NA +15:69756206 15:69563116 PCAT29(60456)/AC021818.2(47110)--DRAIC BS_WRQHPSXQ ARRIBA other 2 1 high [],duplication PCAT29 AC021818.2 DRAIC NA NA NA NA NA NA +10:94132459 10:94030683 PLCE1--PIPSL(69143)/PLCE1(129) BS_WRQHPSXQ ARRIBA frameshift 3 0 medium [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +13:19759323 13:19838985 PSPC1--ZMYM5 BS_WRQHPSXQ ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_WRQHPSXQ ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +4:146803457 4:146909249 TTC29--TTC29 BS_WRQHPSXQ ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.24Mb]],duplication/non-canonical_splicing TTC29 NA TTC29 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WSQMAA33 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WSQMAA33 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:80534171 16:75477313 AC021028.1--CHST6 BS_WSQMAA33 ARRIBA other 4 0 low [INTERCHROMOSOMAL[chr10--chr16]],translocation AC021028.1 NA CHST6 NA NA NA NA NA NA +12:8664115 12:8654346 AC092490.2--MFAP5 BS_WSQMAA33 ARRIBA other 29 0 high [INTRACHROMOSOMAL[chr12:0.00Mb],LOCAL_INVERSION:+:-:[1123]],duplication/5'-5' AC092490.2 NA MFAP5 NA NA NA NA NA NA +12:8625141 14:81278739 AICDA(12270)/AC092184.1(6404)--STON2 BS_WSQMAA33 ARRIBA other 4 0 medium [],translocation AICDA AC092184.1 STON2 NA NA NA NA NA NA +9:134825904 9:134801954 COL5A1--COL5A1 BS_WSQMAA33 ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.20Mb]],duplication/non-canonical_splicing COL5A1 NA COL5A1 NA NA NA NA NA NA +12:123859268 12:123857056 DNAH10--DNAH10 BS_WSQMAA33 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing DNAH10 NA DNAH10 NA NA NA NA NA NA +X:152345581 X:152364596 GABRA3--GABRA3 BS_WSQMAA33 ARRIBA in-frame 30 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.29Mb]],duplication/non-canonical_splicing GABRA3 NA GABRA3 NA NA NA NA NA NA +X:152345581 X:152458262 GABRA3--GABRA3(6904)/KRT8P8(21315) BS_WSQMAA33 ARRIBA frameshift 22 0 medium [],duplication GABRA3 NA GABRA3 KRT8P8 NA NA NA NA NA +10:96941597 12:4628805 LCOR--AKAP3 BS_WSQMAA33 ARRIBA other 54 1 high [INTERCHROMOSOMAL[chr10--chr12]],translocation/3'-3' LCOR NA AKAP3 NA TranscriptionFactor NA NA NA NA +2:77518318 2:77519864 LRRTM4--LRRTM4 BS_WSQMAA33 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.85Mb]],duplication/non-canonical_splicing LRRTM4 NA LRRTM4 NA NA NA NA NA NA +1:228250240 1:228213441 OBSCN--OBSCN BS_WSQMAA33 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.17Mb]],duplication/non-canonical_splicing OBSCN NA OBSCN NA Kinase, Oncogene, Kinase Kinase, Oncogene, Kinase NA NA NA +X:72681347 7:98141397 PHKA1--LMTK2 BS_WSQMAA33 ARRIBA other 3 0 high [INTERCHROMOSOMAL[chrX--chr7]],translocation/3'-3' PHKA1 NA LMTK2 NA NA Kinase NA NA NA +9:68940790 9:68923302 PIP5K1B--PIP5K1B BS_WSQMAA33 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.30Mb]],duplication/non-canonical_splicing PIP5K1B NA PIP5K1B NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WSQMAA33 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:15433636 9:15422142 SNAPC3--RPL7P33(60008)/SNAPC3(562) BS_WSQMAA33 ARRIBA frameshift 9 0 medium [],duplication SNAPC3 NA RPL7P33 SNAPC3 Oncogene NA NA Oncogene NA +X:141520519 X:140855625 SPANXA2-OT1--CDR1(70754)/MIR320D2(70547) BS_WSQMAA33 ARRIBA other 3 0 medium [],inversion SPANXA2-OT1 NA CDR1 MIR320D2 NA NA NA NA NA +14:61996542 14:61995876 SYT16--SYT16 BS_WSQMAA33 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +X:71408151 X:71349086 TAF1--AL590762.3(33207)/AL590762.2(3332) BS_WSQMAA33 ARRIBA frameshift 24 1 high [],inversion TAF1 NA AL590762.3 AL590762.2 Kinase NA NA NA NA +X:70907753 X:71297377 TEX11--NONO BS_WSQMAA33 ARRIBA in-frame 12 3 medium [INTRACHROMOSOMAL[chrX:0.37Mb]],inversion TEX11 NA NONO NA NA CosmicCensus, Oncogene NA NA NA +11:76016980 11:75879879 UVRAG--UVRAG BS_WSQMAA33 ARRIBA frameshift 20 2 low [SELFIE,INTRACHROMOSOMAL[chr11:0.33Mb]],duplication/non-canonical_splicing UVRAG NA UVRAG NA TumorSuppressorGene TumorSuppressorGene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WV0S8N4M ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WV0S8N4M ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WV0S8N4M ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WVW3W6ZB ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WVW3W6ZB ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:100687832 11:100340463 ARHGAP42--CNTN5 BS_WVW3W6ZB ARRIBA frameshift 2 0 low [CCLE,INTRACHROMOSOMAL[chr11:0.33Mb]],duplication ARHGAP42 NA CNTN5 NA NA NA NA NA NA +17:71185596 17:70779229 CASC17--AC007423.1 BS_WVW3W6ZB ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr17:0.32Mb]],deletion CASC17 NA AC007423.1 NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_WVW3W6ZB ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +10:94032252 10:94005450 PLCE1--PIPSL(43910)/PLCE1(25362) BS_WVW3W6ZB ARRIBA frameshift 2 1 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WVW3W6ZB ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WWKNJSJ5 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WWKNJSJ5 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_WWKNJSJ5 ARRIBA other 7 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_WWKNJSJ5 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +2:8201947 2:8245140 LINC00299--LINC00299 BS_WWKNJSJ5 ARRIBA other 2 1 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.38Mb]],duplication LINC00299 NA LINC00299 NA NA NA NA NA NA +15:70585875 15:70096261 LINC02204--TLE3 BS_WWKNJSJ5 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:0.47Mb]],deletion LINC02204 NA TLE3 NA NA NA NA NA NA +15:70585875 15:70130891 LINC02204--TLE3(32715)/RNU6-745P(62345) BS_WWKNJSJ5 ARRIBA other 4 0 medium [],deletion LINC02204 NA TLE3 RNU6-745P NA NA NA NA NA +13:108898133 13:108883059 MYO16--MYO16 BS_WWKNJSJ5 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +14:49862572 6:52995636 RN7SL2--RN7SK BS_WWKNJSJ5 STARFUSION other 5 13 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL2 NA RN7SK NA NA NA NA NA NA +14:49862561 6:52995634 RN7SL2--RN7SK BS_WWKNJSJ5 STARFUSION other 4 13 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL2 NA RN7SK NA NA NA NA NA NA +14:49862557 6:52995790 RN7SL2--RN7SK BS_WWKNJSJ5 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL2 NA RN7SK NA NA NA NA NA NA +14:49862572 6:52995776 RN7SL2--RN7SK BS_WWKNJSJ5 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL2 NA RN7SK NA NA NA NA NA NA +14:49862573 6:52995669 RN7SL2--RN7SK BS_WWKNJSJ5 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL2 NA RN7SK NA NA NA NA NA NA +14:49862569 6:52995679 RN7SL2--RN7SK BS_WWKNJSJ5 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL2 NA RN7SK NA NA NA NA NA NA +14:49862575 6:52995745 RN7SL2--RN7SK BS_WWKNJSJ5 STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL2 NA RN7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WWKNJSJ5 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_WYERXS4G ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WYERXS4G ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:199070153 2:198579708 AC020718.1--AC019330.1 BS_WYERXS4G ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr2:0.11Mb]],deletion AC020718.1 NA AC019330.1 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_WYERXS4G ARRIBA other 11 1 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_WYERXS4G ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +11:95978441 11:95264763 MAML2--AP000787.1(30659)/AP001790.1(217643) BS_WYERXS4G ARRIBA other 4 1 medium [],inversion MAML2 NA AP000787.1 AP001790.1 CosmicCensus, Oncogene NA NA NA NA +11:96341383 X:72100189 MAML2--NHSL2 BS_WYERXS4G ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr11--chrX]],translocation/5'-5' MAML2 NA NHSL2 NA CosmicCensus, Oncogene NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_WYERXS4G ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96912817 12:96792329 NEDD1--CFAP54 BS_WYERXS4G ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_WYERXS4G STARFUSION frameshift 5 1 NA [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]] NEDD1 NA CFAP54 NA NA NA NA NA NA +3:181231846 1:235127925 RNU6-4P--SNORA14B BS_WYERXS4G STARFUSION other 6 0 NA [INTERCHROMOSOMAL[chr3--chr1]] RNU6-4P NA SNORA14B NA NA NA NA NA NA +3:181231845 6:159780370 RNU6-4P--SNORA20 BS_WYERXS4G STARFUSION other 6 0 NA [INTERCHROMOSOMAL[chr3--chrY]] RNU6-4P NA SNORA20 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--METTL12 BS_WYERXS4G STARFUSION other 6 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA METTL12 NA NA NA NA NA NA +19:893592 11:62665431 RNU6-9--SNORA57 BS_WYERXS4G STARFUSION other 6 0 NA [INTERCHROMOSOMAL[chr19--chr11]] RNU6-9 NA SNORA57 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WYERXS4G ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:102206074 11:96093517 YAP1--MAML2 BS_WYERXS4G ARRIBA in-frame 17 3 high [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion +11:102206086 11:96093517 YAP1--MAML2 BS_WYERXS4G ARRIBA in-frame 5 3 high [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]],inversion YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion +11:102206074 11:96093517 YAP1--MAML2 BS_WYERXS4G STARFUSION in-frame 17 3 NA [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]] YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion +11:102206086 11:96093517 YAP1--MAML2 BS_WYERXS4G STARFUSION in-frame 5 3 NA [ChimerPub,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr11:5.77Mb]] YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion +16:29082041 4:113174416 AC009093.3--ANK2 BS_WYG77VVP ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_WYG77VVP ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_WYG77VVP ARRIBA other 4 0 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_WYG77VVP ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_WYG77VVP ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_WYG77VVP ARRIBA frameshift 8 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_WYG77VVP ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_WYG77VVP ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211103602 AL590132.1--KCNH1 BS_WYG77VVP ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_WYG77VVP ARRIBA other 6 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +1:183951007 1:184082885 COLGALT2--TSEN15(8673)/Y_RNA(88829) BS_WYG77VVP ARRIBA frameshift 3 0 medium [],duplication COLGALT2 NA TSEN15 Y_RNA NA NA NA NA NA +3:57357176 3:57363786 DNAH12--DNAH12 BS_WYG77VVP ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +14:106268605 9:137462232 IGH@--PNPLA7 BS_WYG77VVP STARFUSION other 76 1 NA [INTERCHROMOSOMAL[chr14--chr9]] IGH@ NA PNPLA7 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_WYG77VVP ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_WYG77VVP ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_WYG77VVP ARRIBA frameshift 8 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_WYG77VVP ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_WYG77VVP ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211103602 KCNH1--AL590132.1 BS_WYG77VVP ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_WYG77VVP ARRIBA frameshift 8 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_WYG77VVP ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_WYG77VVP ARRIBA other 26 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +13:19475573 13:19570288 TPTE2--MRPS31P2 BS_WYG77VVP ARRIBA frameshift 8 4 high [FA_CancerSupp,INTRACHROMOSOMAL[chr13:0.02Mb],LOCAL_REARRANGEMENT:-:[15809]],duplication TPTE2 NA MRPS31P2 NA TumorSuppressorGene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_X0F9AYEC ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_X0F9AYEC ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_X0F9AYEC ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_X0F9AYEC ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_X0F9AYEC ARRIBA other 8 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_X0F9AYEC ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137521866 7:137609609 DGKI--DGKI BS_X0F9AYEC ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_X0F9AYEC ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_X0F9AYEC ARRIBA in-frame 5 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_X0F9AYEC ARRIBA frameshift 20 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_X0F9AYEC ARRIBA frameshift 25 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_X0F9AYEC ARRIBA other 2 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +8:124555742 8:124558832 MTSS1--MTSS1 BS_X0F9AYEC ARRIBA frameshift 23 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_X0F9AYEC ARRIBA other 15 0 high [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +12:70656704 12:70701323 PTPRR--PTPRR BS_X0F9AYEC ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +14:49862561 14:20343401 RN7SL2--AL355075.4 BS_X0F9AYEC STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA AL355075.4 NA NA NA NA NA NA +14:49862574 14:20343204 RN7SL2--RPPH1 BS_X0F9AYEC STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +14:49862561 14:20343401 RN7SL2--RPPH1 BS_X0F9AYEC STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RN7SL2 NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_X0F9AYEC ARRIBA other 53 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_X16PENSA ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_X16PENSA ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:48809641 2:48809118 AC009975.1--ELOBP3(28223)/AC009975.1(222) BS_X16PENSA ARRIBA other 2 3 low [],duplication AC009975.1 NA ELOBP3 AC009975.1 NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_X16PENSA ARRIBA other 10 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +8:68721437 8:68439499 C8orf34--C8orf34 BS_X16PENSA ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.49Mb]],duplication/non-canonical_splicing C8orf34 NA C8orf34 NA NA NA NA NA NA +1:58253807 1:58539310 DAB1--OMA1 BS_X16PENSA ARRIBA other 1 6 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58539310 DAB1--OMA1 BS_X16PENSA ARRIBA other 3 2 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58536741 DAB1--OMA1 BS_X16PENSA ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58534331 DAB1--OMA1 BS_X16PENSA ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58527261 1:58539310 DAB1--OMA1 BS_X16PENSA ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_X16PENSA ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +17:46152904 17:46172232 KANSL1--KANSL1 BS_X16PENSA ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr17:0.20Mb]],duplication/non-canonical_splicing KANSL1 NA KANSL1 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_X16PENSA ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_X16PENSA ARRIBA in-frame 17 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138861139 7:140787584 KIAA1549--BRAF BS_X16PENSA STARFUSION in-frame 17 2 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +10:94171496 10:94005450 PLCE1--PIPSL(43910)/PLCE1(25362) BS_X16PENSA ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_X16PENSA ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_X16PENSA ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_X16PENSA ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_X16PENSA ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:122261261 12:68871956 AC048338.1--CPM BS_X23724NJ ARRIBA in-frame 9 2 high [INTRACHROMOSOMAL[chr12:53.24Mb]],deletion AC048338.1 NA CPM NA NA NA NA NA NA +12:65019521 12:57929865 AC135895.1--AC083805.3(33019)/AC084033.3(1663) BS_X23724NJ ARRIBA other 3 1 medium [],deletion AC135895.1 NA AC083805.3 AC084033.3 NA NA NA NA NA +9:119208719 9:119214155 BRINP1--BRINP1 BS_X23724NJ ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +18:61507560 18:61500383 CDH20--CDH20 BS_X23724NJ ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.22Mb]],duplication/non-canonical_splicing CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA +8:27605026 8:18120496 CLU--AC124242.1(24102)/NAT1(49981) BS_X23724NJ ARRIBA frameshift 5 0 medium [],deletion CLU NA AC124242.1 NAT1 TumorSuppressorGene, Oncogene NA NA Oncogene NA +17:14102242 17:58016055 COX10--AC015813.5(7868)/AC015813.3(60836) BS_X23724NJ ARRIBA frameshift 2 0 medium [],inversion COX10 NA AC015813.5 AC015813.3 NA NA NA NA NA +12:113058451 12:63153988 DTX1--AC135584.1 BS_X23724NJ ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr12:49.90Mb]],inversion/3'-3' DTX1 NA AC135584.1 NA NA NA NA NA NA +12:113058451 12:63158490 DTX1--AC135584.1(4484)/HNRNPA1P69(112914) BS_X23724NJ ARRIBA frameshift 4 0 medium [],inversion DTX1 NA AC135584.1 HNRNPA1P69 NA NA NA NA NA +15:49239367 4:83388472 GALK2--AC114781.4(10396)/HELQ(18871) BS_X23724NJ ARRIBA frameshift 9 0 high [],translocation GALK2 NA AC114781.4 HELQ Kinase NA NA NA NA +12:65838569 12:113077424 HMGA2--DTX1 BS_X23724NJ ARRIBA frameshift 36 2 high [INTRACHROMOSOMAL[chr12:47.09Mb]],deletion HMGA2 NA DTX1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +12:65838569 12:113093162 HMGA2--DTX1 BS_X23724NJ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:47.09Mb]],deletion HMGA2 NA DTX1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +12:65838569 12:113077424 HMGA2--DTX1 BS_X23724NJ STARFUSION frameshift 37 2 NA [INTRACHROMOSOMAL[chr12:47.09Mb]] HMGA2 NA DTX1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +17:72592203 17:82852809 LINC00511--TBCD BS_X23724NJ ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr17:10.11Mb]],duplication/5'-5' LINC00511 NA TBCD NA NA NA NA NA NA +17:72592203 17:82832636 LINC00511--ZNF750 BS_X23724NJ ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr17:10.19Mb]],duplication LINC00511 NA ZNF750 NA NA TranscriptionFactor NA NA NA +12:122526848 12:68451552 RSRC2--LINC02384 BS_X23724NJ ARRIBA frameshift 17 0 medium [INTRACHROMOSOMAL[chr12:54.05Mb]],deletion RSRC2 NA LINC02384 NA NA NA NA NA NA +12:122526848 12:68442141 RSRC2--LINC02384 BS_X23724NJ ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr12:54.05Mb]],deletion RSRC2 NA LINC02384 NA NA NA NA NA NA +12:122526848 12:68486727 RSRC2--LINC02384 BS_X23724NJ STARFUSION other 18 0 NA [INTRACHROMOSOMAL[chr12:54.05Mb]] RSRC2 NA LINC02384 NA NA NA NA NA NA +12:122526848 12:68451552 RSRC2--LINC02384 BS_X23724NJ STARFUSION other 17 0 NA [INTRACHROMOSOMAL[chr12:54.05Mb]] RSRC2 NA LINC02384 NA NA NA NA NA NA +12:122526848 12:68554012 RSRC2--RPSAP12 BS_X23724NJ ARRIBA frameshift 9 0 medium [INTRACHROMOSOMAL[chr12:53.95Mb]],deletion RSRC2 NA RPSAP12 NA NA NA NA NA NA +21:46602278 13:103124966 S100B--SLC10A2(58120)/LINC01309(300234) BS_X23724NJ ARRIBA frameshift 10 0 medium [],translocation S100B NA SLC10A2 LINC01309 Oncogene NA NA NA NA +17:77402703 17:76061574 SEPT9--SRP68 BS_X23724NJ ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr17:1.21Mb]],inversion SEPT9 NA SRP68 NA CosmicCensus, Oncogene NA NA NA NA +17:77402703 17:76060390 SEPT9--SRP68 BS_X23724NJ ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr17:1.21Mb]],inversion SEPT9 NA SRP68 NA CosmicCensus, Oncogene NA NA NA NA +17:77402703 17:76061219 SEPT9--SRP68 BS_X23724NJ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:1.21Mb]],inversion SEPT9 NA SRP68 NA CosmicCensus, Oncogene NA NA NA NA +8:120693692 8:121777896 SNTB1--AC104233.1(70265)/AC104036.1(106828) BS_X23724NJ ARRIBA frameshift 27 3 high [],duplication SNTB1 NA AC104233.1 AC104036.1 NA NA NA NA NA +8:120693692 14:81885275 SNTB1--AL355838.1 BS_X23724NJ ARRIBA frameshift 21 0 medium [INTERCHROMOSOMAL[chr8--chr14]],translocation SNTB1 NA AL355838.1 NA NA NA NA NA NA +8:120693692 8:120812069 SNTB1--SNTB1 BS_X23724NJ ARRIBA in-frame 104 14 high [SELFIE,INTRACHROMOSOMAL[chr8:0.28Mb]],duplication/non-canonical_splicing SNTB1 NA SNTB1 NA NA NA NA NA NA +17:76067217 17:76313891 SRP68--PRPSAP1 BS_X23724NJ ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr17:0.24Mb]],duplication SRP68 NA PRPSAP1 NA NA NA NA NA NA +8:124539025 8:120843523 TATDN1--AC104958.2(30164)/AC068413.1(69542) BS_X23724NJ ARRIBA frameshift 44 0 medium [],deletion TATDN1 NA AC104958.2 AC068413.1 NA NA NA NA NA +8:124539025 8:120812069 TATDN1--SNTB1 BS_X23724NJ ARRIBA frameshift 62 0 high [INTRACHROMOSOMAL[chr8:3.68Mb]],deletion TATDN1 NA SNTB1 NA NA NA NA NA NA +8:124538928 8:120812069 TATDN1--SNTB1 BS_X23724NJ ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr8:3.68Mb]],deletion TATDN1 NA SNTB1 NA NA NA NA NA NA +8:124539025 8:120693908 TATDN1--SNTB1 BS_X23724NJ ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr8:3.68Mb]],deletion TATDN1 NA SNTB1 NA NA NA NA NA NA +8:124539025 8:120830696 TATDN1--SNTB1 BS_X23724NJ STARFUSION other 91 0 NA [INTRACHROMOSOMAL[chr8:3.68Mb]] TATDN1 NA SNTB1 NA NA NA NA NA NA +8:124539025 8:120812069 TATDN1--SNTB1 BS_X23724NJ STARFUSION other 67 0 NA [INTRACHROMOSOMAL[chr8:3.68Mb]] TATDN1 NA SNTB1 NA NA NA NA NA NA +12:95287857 12:99154395 VEZT--ANKS1B BS_X23724NJ ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr12:3.42Mb]],inversion VEZT NA ANKS1B NA TumorSuppressorGene NA NA NA NA +12:122261261 12:68871956 VPS33A--CPM BS_X23724NJ ARRIBA in-frame 9 2 high [INTRACHROMOSOMAL[chr12:53.26Mb]],deletion VPS33A NA CPM NA NA NA NA NA NA +3:167527820 3:167658326 WDR49--WDR49(4343)/PDCD10(24972) BS_X23724NJ ARRIBA frameshift 1 1 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +14:49586872 14:20343377 AL139099.5--AL355075.4 BS_X2QTK3QD STARFUSION other 5 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586754 14:20343206 AL139099.5--AL355075.4 BS_X2QTK3QD STARFUSION other 4 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586757 14:20343398 AL139099.5--AL355075.4 BS_X2QTK3QD STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586872 14:20343377 AL139099.5--RPPH1 BS_X2QTK3QD STARFUSION other 5 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +14:49586756 14:20343210 AL139099.5--RPPH1 BS_X2QTK3QD STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +5:173613131 5:173760031 BOD1--LINC01484(13820)/LINC01485(26759) BS_X2QTK3QD ARRIBA frameshift 9 0 high [],duplication BOD1 NA LINC01484 LINC01485 NA NA NA NA NA +8:96966046 8:96593480 CPQ--SDC2 BS_X2QTK3QD ARRIBA frameshift 2 0 medium [GTEx,CCLE,INTRACHROMOSOMAL[chr8:0.03Mb],LOCAL_REARRANGEMENT:+:[33447]],duplication CPQ NA SDC2 NA NA NA NA NA NA +19:32411372 19:43279019 DPY19L3--CEACAMP11 BS_X2QTK3QD ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr19:10.79Mb]],inversion DPY19L3 NA CEACAMP11 NA NA NA NA NA NA +22:31420425 8:123563412 DRG1--AC090193.2 BS_X2QTK3QD ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr22--chr8]],translocation DRG1 NA AC090193.2 NA NA NA NA NA NA +22:31420425 8:123579945 DRG1--AC090193.2(11183)/RN7SKP155(8814) BS_X2QTK3QD ARRIBA frameshift 3 0 high [],translocation DRG1 NA AC090193.2 RN7SKP155 NA NA NA NA NA +6:64590223 6:64593309 EYS--EYS BS_X2QTK3QD ARRIBA frameshift 16 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +16:85357643 22:48749839 GSE1--FAM19A5 BS_X2QTK3QD ARRIBA frameshift 20 4 high [INTERCHROMOSOMAL[chr16--chr22]],translocation GSE1 NA FAM19A5 NA Oncogene NA NA NA NA +16:85357643 22:48850758 GSE1--FAM19A5 BS_X2QTK3QD ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr16--chr22]],translocation GSE1 NA FAM19A5 NA Oncogene NA NA NA NA +16:85357643 22:48749839 GSE1--FAM19A5 BS_X2QTK3QD STARFUSION frameshift 20 4 NA [INTERCHROMOSOMAL[chr16--chr22]] GSE1 NA FAM19A5 NA Oncogene NA NA NA NA +3:178801793 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_X2QTK3QD ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +22:29604112 8:130850964 NF2--ADCY8 BS_X2QTK3QD ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr22--chr8]],translocation/5'-5' NF2 NA ADCY8 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:29604112 8:131077121 NF2--ADCY8(34695)/AC087341.1(53267) BS_X2QTK3QD ARRIBA frameshift 2 0 high [],translocation NF2 NA ADCY8 AC087341.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +5:177244270 5:169149971 NSD1--SLIT3 BS_X2QTK3QD ARRIBA frameshift 29 3 high [INTRACHROMOSOMAL[chr5:7.83Mb]],duplication/5'-5' NSD1 NA SLIT3 NA CosmicCensus, Oncogene NA NA NA NA +10:94032252 10:94017339 PLCE1--PIPSL(55799)/PLCE1(13473) BS_X2QTK3QD ARRIBA frameshift 4 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +14:73088161 2:180827241 RBM25--SCHLAP1 BS_X2QTK3QD ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr14--chr2]],translocation RBM25 NA SCHLAP1 NA NA NA NA NA NA +14:49586872 14:20343377 RN7SL1--AL355075.4 BS_X2QTK3QD STARFUSION other 5 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586758 14:20343203 RN7SL1--AL355075.4 BS_X2QTK3QD STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586872 14:20343377 RN7SL1--RPPH1 BS_X2QTK3QD STARFUSION other 5 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +14:49586757 14:20343398 RN7SL1--RPPH1 BS_X2QTK3QD STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +14:49586860 14:20343397 RN7SL1--RPPH1 BS_X2QTK3QD STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +14:49586758 14:20343203 RN7SL1--RPPH1 BS_X2QTK3QD STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +21:44059214 17:36010020 TRAPPC10--AC244100.3 BS_X2QTK3QD ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr21--chr17]],translocation TRAPPC10 NA AC244100.3 NA NA NA NA NA NA +21:44059214 17:35961556 TRAPPC10--LYZL6(17857)/AC244100.1(1932) BS_X2QTK3QD ARRIBA frameshift 51 7 high [],translocation TRAPPC10 NA LYZL6 AC244100.1 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_X4X1SFSE ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_X4X1SFSE ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:88498673 5:88508354 AC091826.2--LINC00461 BS_X4X1SFSE ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_REARRANGEMENT:-:[8849]],duplication AC091826.2 NA LINC00461 NA NA NA NA NA NA +14:36215515 14:36164120 AL162511.1--LINC00609 BS_X4X1SFSE ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +14:36215058 14:36164120 AL162511.1--LINC00609 BS_X4X1SFSE ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.05Mb],LOCAL_REARRANGEMENT:+:[49319]],duplication AL162511.1 NA LINC00609 NA NA NA NA NA NA +1:219245729 1:219193082 AL360093.1(20232)/AC096642.1(25045)--LYPLAL1 BS_X4X1SFSE ARRIBA other 1 1 low [],duplication AL360093.1 AC096642.1 LYPLAL1 NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_X4X1SFSE ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_X4X1SFSE ARRIBA other 1 1 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +11:12986040 11:13001226 LINC00958--AC084859.1 BS_X4X1SFSE ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr11:0.01Mb],LOCAL_REARRANGEMENT:-:[11542]],duplication LINC00958 NA AC084859.1 NA NA NA NA NA NA +16:76635623 16:76535545 LINC02125--CNTNAP4 BS_X4X1SFSE ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr16:0.08Mb],LOCAL_REARRANGEMENT:+:[75760]],duplication LINC02125 NA CNTNAP4 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_X4X1SFSE ARRIBA other 3 1 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_X4X1SFSE ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_X4X1SFSE ARRIBA in-frame 16 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_X4X1SFSE ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_X59HSFGG ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_X59HSFGG ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_X59HSFGG ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +6:127343336 6:127463594 ECHDC1--SOGA3 BS_X59HSFGG ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr6:0.09Mb],LOCAL_REARRANGEMENT:-:[94797]],inversion/5'-5' ECHDC1 NA SOGA3 NA NA NA NA NA NA +15:79889093 15:79907684 MTHFS--ST20 BS_X59HSFGG ARRIBA in-frame 2 0 low [GTEx,INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_REARRANGEMENT:-:[1461]],duplication MTHFS NA ST20 NA NA TumorSuppressorGene NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_X59HSFGG ARRIBA frameshift 4 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_X59HSFGG ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:157906212 6:157896827 SNX9--SNX9 BS_X59HSFGG ARRIBA in-frame 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr6:0.24Mb]],duplication/non-canonical_splicing SNX9 NA SNX9 NA NA NA NA NA NA +4:16355785 4:16256257 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_X59HSFGG ARRIBA other 1 3 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +10:17229391 14:49586588 VIM-AS1--AL139099.5 BS_X59HSFGG STARFUSION other 15 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA AL139099.5 NA NA NA NA NA NA +10:17229391 14:49586588 VIM-AS1--RN7SL1 BS_X59HSFGG STARFUSION other 15 0 NA [INTERCHROMOSOMAL[chr10--chr14]] VIM-AS1 NA RN7SL1 NA NA NA NA NA NA +6:52995859 14:49862667 7SK--RN7SL2 BS_X67GTEM6 STARFUSION other 5 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995909 14:49862666 7SK--RN7SL2 BS_X67GTEM6 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995809 14:49862654 7SK--RN7SL2 BS_X67GTEM6 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995881 14:49862665 7SK--RN7SL2 BS_X67GTEM6 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +12:21815763 12:21894174 ABCC9--ABCC9 BS_X67GTEM6 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing ABCC9 NA ABCC9 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_X67GTEM6 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_X67GTEM6 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:16426440 4:16238771 AC097515.1--TAPT1-AS1 BS_X67GTEM6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16421133 4:16238771 AC097515.1--TAPT1-AS1 BS_X67GTEM6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +15:93656437 15:93557472 AC110023.1--AC091078.1 BS_X67GTEM6 ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93569438 AC110023.1--AC091078.1 BS_X67GTEM6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_X67GTEM6 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +14:49586858 14:20343396 AL139099.5--AL355075.4 BS_X67GTEM6 STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586858 14:20343396 AL139099.5--RPPH1 BS_X67GTEM6 STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +10:47542167 10:46943918 AL591684.2--PTPN20 BS_X67GTEM6 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr10:0.52Mb]],inversion AL591684.2 NA PTPN20 NA NA NA NA NA NA +10:47542167 10:46940623 AL591684.2--PTPN20 BS_X67GTEM6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.52Mb]],inversion AL591684.2 NA PTPN20 NA NA NA NA NA NA +10:47542167 10:46943918 BMS1P2--PTPN20 BS_X67GTEM6 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr10:0.54Mb]],inversion BMS1P2 NA PTPN20 NA NA NA NA NA NA +10:47542167 10:46940623 BMS1P2--PTPN20 BS_X67GTEM6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.54Mb]],inversion BMS1P2 NA PTPN20 NA NA NA NA NA NA +8:68787536 8:68708994 C8orf34--C8orf34 BS_X67GTEM6 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.49Mb]],duplication/non-canonical_splicing C8orf34 NA C8orf34 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_X67GTEM6 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +3:57357176 3:57363786 DNAH12--DNAH12 BS_X67GTEM6 ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.25Mb]],duplication/non-canonical_splicing DNAH12 NA DNAH12 NA NA NA NA NA NA +20:54610523 20:54554933 DOK5--DOK5 BS_X67GTEM6 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.18Mb]],duplication/non-canonical_splicing DOK5 NA DOK5 NA NA NA NA NA NA +7:103210267 7:103243046 DPY19L2P2--DPY19L2P2 BS_X67GTEM6 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.11Mb]],duplication/non-canonical_splicing DPY19L2P2 NA DPY19L2P2 NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_X67GTEM6 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +6:138889031 6:138842979 ECT2L--ECT2L BS_X67GTEM6 ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA +22:31495983 17:27212658 EIF4ENIF1--AC069061.4(128622)/AC129926.1(25201) BS_X67GTEM6 ARRIBA other 2 0 low [],translocation EIF4ENIF1 NA AC069061.4 AC129926.1 NA NA NA NA NA +8:27525469 1:20357865 EPHX2--VWA5B1(2971)/LINC01141(2714) BS_X67GTEM6 ARRIBA frameshift 2 0 low [],translocation EPHX2 NA VWA5B1 LINC01141 NA NA NA NA NA +4:161455004 4:161500134 FSTL5--FSTL5 BS_X67GTEM6 ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_X67GTEM6 ARRIBA in-frame 4 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_X67GTEM6 ARRIBA other 17 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +X:70387297 X:70341799 KIF4A--KIF4A BS_X67GTEM6 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.13Mb]],duplication/non-canonical_splicing KIF4A NA KIF4A NA NA NA NA NA NA +6:97085341 6:97041492 KLHL32--KLHL32 BS_X67GTEM6 ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing KLHL32 NA KLHL32 NA NA NA NA NA NA +10:73250815 10:73256416 MRPS16--CFAP70 BS_X67GTEM6 ARRIBA frameshift 11 3 high [FA_CancerSupp,INTRACHROMOSOMAL[chr10:0.00Mb],LOCAL_REARRANGEMENT:-:[1066]],duplication MRPS16 NA CFAP70 NA NA NA NA NA NA +10:73251763 10:73256416 MRPS16--CFAP70 BS_X67GTEM6 ARRIBA frameshift 12 1 high [FA_CancerSupp,INTRACHROMOSOMAL[chr10:0.00Mb],LOCAL_REARRANGEMENT:-:[1066]],duplication MRPS16 NA CFAP70 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_X67GTEM6 ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +12:106750793 12:106686884 RFX4--RFX4 BS_X67GTEM6 ARRIBA frameshift 8 4 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +14:49586857 14:20343396 RN7SL1--AL355075.4 BS_X67GTEM6 STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586857 14:20343396 RN7SL1--RPPH1 BS_X67GTEM6 STARFUSION other 3 13 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +14:49862569 6:52995629 RN7SL2--RN7SK BS_X67GTEM6 STARFUSION other 5 15 NA [INTERCHROMOSOMAL[chr14--chr6]] RN7SL2 NA RN7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_X67GTEM6 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16320065 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_X67GTEM6 ARRIBA other 6 1 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:119685754 2:119604672 TMEM177--CFAP221 BS_X67GTEM6 ARRIBA frameshift 2 0 high [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:+:[16916]],duplication TMEM177 NA CFAP221 NA NA NA NA NA NA +14:37701526 14:37680151 TTC6--TTC6 BS_X67GTEM6 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_X91K8KMG ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_X91K8KMG ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:81888520 7:122010332 ALYREF--PTPRZ1 BS_X91K8KMG ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr17--chr7]],translocation ALYREF NA PTPRZ1 NA NA NA NA NA NA +4:186149704 4:188485779 FAM149A--LINC01060 BS_X91K8KMG ARRIBA frameshift 10 1 high [INTRACHROMOSOMAL[chr4:2.23Mb]],deletion FAM149A NA LINC01060 NA NA NA NA NA NA +4:186105642 4:188485779 FAM149A--LINC01060 BS_X91K8KMG ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:2.23Mb]],deletion FAM149A NA LINC01060 NA NA NA NA NA NA +4:186149283 4:188485779 FAM149A--LINC01060 BS_X91K8KMG ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:2.23Mb]],deletion FAM149A NA LINC01060 NA NA NA NA NA NA +4:186149704 4:188485779 FAM149A--LINC01060 BS_X91K8KMG STARFUSION other 11 1 NA [INTRACHROMOSOMAL[chr4:2.23Mb]] FAM149A NA LINC01060 NA NA NA NA NA NA +4:188485865 4:186149173 LINC01060--FAM149A BS_X91K8KMG ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr4:2.23Mb]],duplication LINC01060 NA FAM149A NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_X91K8KMG ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:89244782 2:88861562 IGKV2-30--AC244205.1 BS_X9EGD530 STARFUSION other 13 4 NA [INTRACHROMOSOMAL[chr2:0.38Mb]] IGKV2-30 NA AC244205.1 NA NA NA NA NA NA +7:138861139 7:140781693 KIAA1549--BRAF BS_X9EGD530 ARRIBA in-frame 9 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_X9EGD530 ARRIBA other 3 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_XBQZYS8G ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_XBQZYS8G ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_XBQZYS8G ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +14:49586759 6:52995785 AL139099.5--7SK BS_XBQZYS8G STARFUSION other 5 14 NA [INTERCHROMOSOMAL[chr14--chr1]] AL139099.5 NA 7SK NA NA NA NA NA NA +1:85270618 2:36528686 BCL10--CRIM1 BS_XBQZYS8G ARRIBA frameshift 9 2 high [INTERCHROMOSOMAL[chr1--chr2]],translocation/5'-5' BCL10 NA CRIM1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +1:85270618 2:36542075 BCL10--FEZ2 BS_XBQZYS8G ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr1--chr2]],translocation BCL10 NA FEZ2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +1:85270618 2:36532021 BCL10--FEZ2 BS_XBQZYS8G ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr1--chr2]],translocation BCL10 NA FEZ2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +X:131364749 X:131369052 IGSF1--IGSF1 BS_XBQZYS8G ARRIBA other 2 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.31Mb]],duplication/non-canonical_splicing IGSF1 NA IGSF1 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_XBQZYS8G ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +9:36674937 9:36669310 MELK--MELK BS_XBQZYS8G ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.10Mb]],duplication/non-canonical_splicing MELK NA MELK NA Kinase, Kinase Kinase, Kinase NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_XBQZYS8G ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +14:49586759 6:52995785 RN7SL1--7SK BS_XBQZYS8G STARFUSION other 5 14 NA [INTERCHROMOSOMAL[chr14--chr1]] RN7SL1 NA 7SK NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_XBQZYS8G ARRIBA other 23 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:27958606 12:28133252 AC008011.2--CCDC91 BS_XF0ZX2B3 STARFUSION other 5 2 NA [INTRACHROMOSOMAL[chr12:0.16Mb]] AC008011.2 NA CCDC91 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_XF0ZX2B3 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_XF0ZX2B3 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:67490590 11:32008602 AIP--RCN1 BS_XF0ZX2B3 ARRIBA other 9 1 medium [INTRACHROMOSOMAL[chr11:35.38Mb]],duplication AIP NA RCN1 NA TumorSuppressorGene NA NA NA NA +3:182913994 3:182885951 ATP11B--ATP11B BS_XF0ZX2B3 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.13Mb]],duplication/non-canonical_splicing ATP11B NA ATP11B NA NA NA NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_XF0ZX2B3 ARRIBA in-frame 31 0 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_XF0ZX2B3 ARRIBA in-frame 7 0 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662205 C11orf95--RELA BS_XF0ZX2B3 STARFUSION in-frame 31 0 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63765807 11:65662088 C11orf95--RELA BS_XF0ZX2B3 STARFUSION in-frame 7 0 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +15:92974950 15:92955423 CHD2--CHD2 BS_XF0ZX2B3 ARRIBA in-frame 25 4 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr15:0.13Mb]],duplication/non-canonical_splicing CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:21582021 7:21570069 DNAH11--DNAH11 BS_XF0ZX2B3 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.36Mb]],duplication/non-canonical_splicing DNAH11 NA DNAH11 NA NA NA NA NA NA +2:195897667 2:195907009 DNAH7--DNAH7 BS_XF0ZX2B3 ARRIBA in-frame 7 4 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_XF0ZX2B3 ARRIBA other 4 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +14:100955949 14:100913432 MEG8--MEG8 BS_XF0ZX2B3 ARRIBA other 24 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.13Mb]],duplication/non-canonical_splicing MEG8 NA MEG8 NA NA NA NA NA NA +3:27115940 3:27141582 NEK10--NEK10 BS_XF0ZX2B3 ARRIBA frameshift 5 0 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr3:0.26Mb]],duplication/non-canonical_splicing NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA +3:181231845 6:159780370 RNU6-4P--SNORA20 BS_XF0ZX2B3 STARFUSION other 10 0 NA [INTERCHROMOSOMAL[chr3--chrY]] RNU6-4P NA SNORA20 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_XF0ZX2B3 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:106685809 3:106838212 Y_RNA(169811)/Y_RNA(2869)--LINC00882 BS_XF0ZX2B3 ARRIBA other 1 2 medium [],duplication Y_RNA Y_RNA LINC00882 NA NA NA NA NA NA +8:129679928 8:129102389 AC103718.1--LINC00976(136388)/LINC00977(114078) BS_XG0DBWVT ARRIBA other 2 0 medium [],deletion AC103718.1 NA LINC00976 LINC00977 NA NA NA NA NA +13:18334935 22:10752913 AL356585.3--U2(16630)/CU459211.1(186475) BS_XG0DBWVT ARRIBA other 2 0 medium [],translocation AL356585.3 NA U2 CU459211.1 NA NA NA NA NA +8:132480147 8:135135524 KCNQ3--RPL23AP56(156245)/LINC01591(98607) BS_XG0DBWVT ARRIBA frameshift 16 0 high [],duplication KCNQ3 NA RPL23AP56 LINC01591 NA NA NA NA NA +19:49090520 19:41248514 SNRNP70--AXL BS_XG0DBWVT ARRIBA in-frame 69 3 high [INTRACHROMOSOMAL[chr19:7.82Mb]],duplication SNRNP70 NA AXL NA NA Kinase, Oncogene, Kinase NA NA NA +19:49090520 19:41252351 SNRNP70--AXL BS_XG0DBWVT ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr19:7.82Mb]],duplication SNRNP70 NA AXL NA NA Kinase, Oncogene, Kinase NA NA NA +19:49090520 19:41248514 SNRNP70--AXL BS_XG0DBWVT STARFUSION in-frame 68 3 NA [INTRACHROMOSOMAL[chr19:7.82Mb]] SNRNP70 NA AXL NA NA Kinase, Oncogene, Kinase NA NA NA +8:133545774 8:133095044 ST3GAL1--TG BS_XG0DBWVT ARRIBA other 10 1 high [FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.32Mb]],inversion ST3GAL1 NA TG NA NA NA NA NA NA +8:133571693 8:133095044 ST3GAL1--TG BS_XG0DBWVT ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr8:0.32Mb]],inversion ST3GAL1 NA TG NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_XGSA3GQE ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_XGSA3GQE ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_XGSA3GQE ARRIBA other 16 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +7:138867975 7:140787584 KIAA1549--BRAF BS_XGSA3GQE ARRIBA in-frame 6 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_XGSA3GQE ARRIBA other 15 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_XGSA3GQE ARRIBA other 10 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +3:167522315 3:167658326 WDR49--WDR49(4343)/PDCD10(24972) BS_XGSA3GQE ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_XHCYEE2S ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +21:17633417 21:17622746 BTG3-AS1(218)/AP000432.1(25859)--BTG3-AS1 BS_XHCYEE2S ARRIBA other 5 0 medium [],duplication BTG3-AS1 AP000432.1 BTG3-AS1 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_XHCYEE2S ARRIBA other 10 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +18:51110874 18:51560593 SMAD4(25829)/AC090330.1(47408)--LINC01630 BS_XHCYEE2S ARRIBA other 1 1 high [],deletion SMAD4 AC090330.1 LINC01630 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +4:26769852 4:26717933 TBC1D19(14501)/STIM2(87826)--TBC1D19 BS_XHCYEE2S ARRIBA other 1 0 low [],duplication TBC1D19 STIM2 TBC1D19 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_XJTW0P8P ARRIBA other 72 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_XJTW0P8P ARRIBA other 72 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_XJTW0P8P ARRIBA other 18 3 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +12:9584164 12:9564160 AC092821.3--AC092821.1 BS_XJTW0P8P ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr12:0.11Mb]],duplication AC092821.3 NA AC092821.1 NA NA NA NA NA NA +12:9606456 12:9564160 AC092821.3--AC092821.1 BS_XJTW0P8P ARRIBA other 15 0 low [INTRACHROMOSOMAL[chr12:0.11Mb]],duplication AC092821.3 NA AC092821.1 NA NA NA NA NA NA +12:9622436 12:9564160 AC092821.3--AC092821.1 BS_XJTW0P8P ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:0.11Mb]],duplication AC092821.3 NA AC092821.1 NA NA NA NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_XJTW0P8P ARRIBA other 11 1 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_XJTW0P8P ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +22:32273507 22:32268288 AL008723.1--SLC5A4-AS1 BS_XJTW0P8P STARFUSION other 14 3 NA [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]] AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_XJTW0P8P ARRIBA other 5 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +7:151017871 13:81610471 ATG9B--AL353633.1(308064)/PTMAP5(79440) BS_XJTW0P8P ARRIBA frameshift 3 0 medium [],translocation ATG9B NA AL353633.1 PTMAP5 NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_XJTW0P8P ARRIBA frameshift 14 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_XJTW0P8P ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +6:83924592 6:83864175 CYB5R4--CYB5R4 BS_XJTW0P8P ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA +2:195936599 2:196001858 DNAH7--DNAH7 BS_XJTW0P8P ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_XJTW0P8P ARRIBA in-frame 72 10 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +5:169881368 5:169884816 FAM196B--FAM196B BS_XJTW0P8P ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.12Mb]],duplication/non-canonical_splicing FAM196B NA FAM196B NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_XJTW0P8P ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:114469299 6:114371592 HDAC2-AS2--HDAC2-AS2 BS_XJTW0P8P ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_XJTW0P8P ARRIBA frameshift 8 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_XJTW0P8P ARRIBA frameshift 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_XJTW0P8P ARRIBA frameshift 15 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_XJTW0P8P ARRIBA in-frame 11 1 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_XJTW0P8P ARRIBA frameshift 6 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +1:92223676 1:92139350 KIAA1107--BTBD8 BS_XJTW0P8P ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.02Mb],LOCAL_REARRANGEMENT:+:[16103]],duplication KIAA1107 NA BTBD8 NA NA NA NA NA NA +1:92182595 1:92139350 KIAA1107--BTBD8 BS_XJTW0P8P ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.02Mb],LOCAL_REARRANGEMENT:+:[16103]],duplication KIAA1107 NA BTBD8 NA NA NA NA NA NA +1:92171460 1:92141115 KIAA1107--BTBD8 BS_XJTW0P8P ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.02Mb],LOCAL_REARRANGEMENT:+:[16103]],duplication KIAA1107 NA BTBD8 NA NA NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_XJTW0P8P ARRIBA frameshift 12 1 low [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_XJTW0P8P ARRIBA frameshift 47 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +6:118813102 6:118856545 MCM9--MCM9 BS_XJTW0P8P ARRIBA other 4 1 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_XJTW0P8P ARRIBA other 6 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +4:118114960 4:118053756 NDST3--NDST3 BS_XJTW0P8P ARRIBA frameshift 41 3 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing NDST3 NA NDST3 NA NA NA NA NA NA +4:118251569 4:118331866 NDST3--PRSS12 BS_XJTW0P8P ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr4:0.02Mb],LOCAL_INVERSION:+:-:[21390]],duplication/3'-3' NDST3 NA PRSS12 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_XJTW0P8P ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_XJTW0P8P ARRIBA in-frame 30 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +X:18761576 X:18730181 PPEF1--PPEF1 BS_XJTW0P8P ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing PPEF1 NA PPEF1 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_XJTW0P8P ARRIBA frameshift 2 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19730239 13:19835689 PSPC1--ZMYM5 BS_XJTW0P8P ARRIBA in-frame 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_XJTW0P8P ARRIBA frameshift 1 1 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_XJTW0P8P ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_XJTW0P8P ARRIBA other 72 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_XJTW0P8P ARRIBA other 11 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +7:23781520 7:23752717 STK31--STK31 BS_XJTW0P8P ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.12Mb]],duplication/non-canonical_splicing STK31 NA STK31 NA Kinase Kinase NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_XJTW0P8P ARRIBA in-frame 19 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +10:131260259 10:131309299 TCERG1L--TCERG1L BS_XJTW0P8P ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA +17:18804266 17:15440285 TVP23B--CDRT4 BS_XJTW0P8P ARRIBA frameshift 2 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr17:3.28Mb]],inversion TVP23B NA CDRT4 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_XKKB4MZV ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_XKKB4MZV ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_XKKB4MZV ARRIBA in-frame 3 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_XKKB4MZV ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_XQ5SFW35 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_XQ5SFW35 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_XQ5SFW35 ARRIBA other 3 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_XQ5SFW35 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +10:4909606 10:4842421 AKR1C6P(17631)/U8(52830)--AKR1E2 BS_XQ5SFW35 ARRIBA other 1 0 low [],duplication AKR1C6P U8 AKR1E2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_XQ5SFW35 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_XQYHPBFS ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_XQYHPBFS ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_XQYHPBFS STARFUSION other 8 15 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_XQYHPBFS ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16323036 4:16256257 TAPT1-AS1(2896)/ZEB2P1(37650)--TAPT1-AS1 BS_XQYHPBFS ARRIBA other 1 0 low [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_XQYHPBFS ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +14:102943664 18:44871140 CDC42BPB--SETBP1 BS_XZTV0J8W ARRIBA other 1 2 medium [INTERCHROMOSOMAL[chr14--chr18]],translocation CDC42BPB NA SETBP1 NA Kinase CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_Y0PCBNJV ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_Y0PCBNJV ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_Y0PCBNJV ARRIBA other 4 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_Y0PCBNJV ARRIBA other 6 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +1:196373140 1:196479238 KCNT2--KCNT2 BS_Y0PCBNJV ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr1:0.38Mb]],duplication/non-canonical_splicing KCNT2 NA KCNT2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_Y0PCBNJV ARRIBA in-frame 11 7 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138861139 7:140787584 KIAA1549--BRAF BS_Y0PCBNJV STARFUSION in-frame 7 7 NA [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]] KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_Y0PCBNJV ARRIBA frameshift 4 0 medium [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_Y0PCBNJV ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_Y0PCBNJV ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_Y3G1X98S ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_Y3G1X98S ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:26189330 11:26309645 AC099687.1--ANO3 BS_Y3G1X98S STARFUSION other 15 1 NA [INTRACHROMOSOMAL[chr11:0.10Mb]] AC099687.1 NA ANO3 NA NA NA NA NA NA +10:109996446 10:110149831 ADD3--SNRPGP12(10405)/MXI1(57774) BS_Y3G1X98S ARRIBA other 4 0 medium [],inversion ADD3 NA SNRPGP12 MXI1 Oncogene NA NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA +1:147606866 1:155247955 BCL9--FAM189B BS_Y3G1X98S ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr1:7.62Mb]],inversion BCL9 NA FAM189B NA CosmicCensus, Oncogene NA NA NA NA +9:137779717 14:93641145 EHMT1--UNC79 BS_Y3G1X98S ARRIBA in-frame 2 1 high [INTERCHROMOSOMAL[chr9--chr14]],translocation EHMT1 NA UNC79 NA Oncogene Oncogene NA NA NA +6:64590223 6:64593309 EYS--EYS BS_Y3G1X98S ARRIBA frameshift 8 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +3:71299820 3:184176951 FOXP1--AP2M1 BS_Y3G1X98S ARRIBA other 54 4 high [INTRACHROMOSOMAL[chr3:112.59Mb]],inversion FOXP1 NA AP2M1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +3:71299820 3:184176951 FOXP1--AP2M1 BS_Y3G1X98S STARFUSION other 58 4 NA [INTRACHROMOSOMAL[chr3:112.59Mb]] FOXP1 NA AP2M1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +1:117368485 22:24938287 MAN1A2--TMEM211 BS_Y3G1X98S ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr1--chr22]],translocation MAN1A2 NA TMEM211 NA NA NA NA NA NA +16:4694238 16:31091342 NUDT16L1--AC135050.2 BS_Y3G1X98S ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr16:26.39Mb]],inversion NUDT16L1 NA AC135050.2 NA NA NA NA NA NA +16:4694308 16:31093421 NUDT16L1--AC135050.2 BS_Y3G1X98S ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr16:26.39Mb]],inversion NUDT16L1 NA AC135050.2 NA NA NA NA NA NA +16:4694238 16:31091342 NUDT16L1--VKORC1 BS_Y3G1X98S ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr16:26.39Mb]],inversion NUDT16L1 NA VKORC1 NA NA NA NA NA NA +16:4694308 16:31093421 NUDT16L1--VKORC1 BS_Y3G1X98S ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr16:26.39Mb]],inversion NUDT16L1 NA VKORC1 NA NA NA NA NA NA +7:5711761 7:38796864 RNF216--VPS41 BS_Y3G1X98S ARRIBA in-frame 10 0 high [INTRACHROMOSOMAL[chr7:32.94Mb]],duplication RNF216 NA VPS41 NA Oncogene NA NA NA NA +1:150364919 1:153093770 RPRD2--SPRR2E BS_Y3G1X98S ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:2.62Mb]],inversion RPRD2 NA SPRR2E NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_Y3G1X98S ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:7303550 20:34559208 SSR1--MAP1LC3A BS_Y3G1X98S ARRIBA in-frame 20 3 high [INTERCHROMOSOMAL[chr6--chr20]],translocation SSR1 NA MAP1LC3A NA NA NA NA NA NA +6:7303550 20:34559208 SSR1--MAP1LC3A BS_Y3G1X98S STARFUSION in-frame 20 3 NA [INTERCHROMOSOMAL[chr6--chr20]] SSR1 NA MAP1LC3A NA NA NA NA NA NA +3:187051346 3:123980493 ST6GAL1--ROPN1 BS_Y3G1X98S ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr3:62.94Mb]],inversion ST6GAL1 NA ROPN1 NA Oncogene NA NA NA NA +1:154182988 1:155301416 TPM3--PKLR BS_Y3G1X98S ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:1.10Mb]],duplication TPM3 NA PKLR NA CosmicCensus, Oncogene NA NA NA NA +10:74097332 1:9174880 VCL--MIR34AHG BS_Y3G1X98S ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr10--chr1]],translocation/5'-5' VCL NA MIR34AHG NA Oncogene NA NA NA NA +11:114187038 11:117842781 ZBTB16--FXYD6 BS_Y3G1X98S ARRIBA in-frame 7 0 medium [INTRACHROMOSOMAL[chr11:3.59Mb]],inversion ZBTB16 NA FXYD6 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +11:114187038 11:117842781 ZBTB16--FXYD6-FXYD2 BS_Y3G1X98S ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr11:3.57Mb]],inversion ZBTB16 NA FXYD6-FXYD2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +1:155015326 1:154269855 ZBTB7B--UBAP2L BS_Y3G1X98S ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.73Mb]],duplication ZBTB7B NA UBAP2L NA TranscriptionFactor NA NA NA NA +6:52995906 14:49862654 7SK--RN7SL2 BS_Y7F9E2E9 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995820 14:49862664 7SK--RN7SL2 BS_Y7F9E2E9 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_Y7F9E2E9 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_Y7F9E2E9 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_Y7F9E2E9 ARRIBA other 3 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_Y7F9E2E9 ARRIBA other 10 1 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_Y7F9E2E9 ARRIBA other 16 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_Y7F9E2E9 ARRIBA in-frame 16 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:74492266 1:74439490 FPGT-TNNI3K--FPGT-TNNI3K BS_Y7F9E2E9 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_Y7F9E2E9 ARRIBA frameshift 22 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_Y7F9E2E9 ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_Y7F9E2E9 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_Y7F9E2E9 ARRIBA frameshift 13 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_Y7F9E2E9 ARRIBA other 2 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +18:34093465 18:34112697 NOL4--NOL4 BS_Y7F9E2E9 ARRIBA frameshift 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr18:0.37Mb]],duplication NOL4 NA NOL4 NA NA NA NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_Y7F9E2E9 ARRIBA other 13 0 high [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_Y7F9E2E9 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_Y7F9E2E9 ARRIBA other 17 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_Y7F9E2E9 ARRIBA other 6 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_Y7F9E2E9 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_Y8D1F5WW ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_Y8D1F5WW ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_Y8D1F5WW ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +10:4929717 10:4830675 AKR1C6P(37742)/U8(32719)--AKR1E2 BS_Y8D1F5WW ARRIBA other 1 0 low [],duplication AKR1C6P U8 AKR1E2 NA NA NA NA NA NA +14:49586868 14:20343401 AL139099.5--AL355075.4 BS_Y8D1F5WW STARFUSION other 5 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586868 14:20343401 AL139099.5--RPPH1 BS_Y8D1F5WW STARFUSION other 5 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_Y8D1F5WW ARRIBA other 6 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +1:186425261 1:186390712 C1orf27(3883)/AL596220.1(9900)--C1orf27 BS_Y8D1F5WW ARRIBA other 3 0 medium [],duplication C1orf27 AL596220.1 C1orf27 NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_Y8D1F5WW ARRIBA frameshift 32 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +3:142198802 3:142484366 GK5--ATR BS_Y8D1F5WW ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr3:0.22Mb]],inversion/5'-5' GK5 NA ATR NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_Y8D1F5WW ARRIBA other 3 0 medium [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_Y8D1F5WW ARRIBA other 13 3 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +17:46170855 17:45597838 KANSL1--AC126544.2(4469)/MAPK8IP1P2(3031) BS_Y8D1F5WW ARRIBA frameshift 2 0 low [],deletion KANSL1 NA AC126544.2 MAPK8IP1P2 NA NA NA NA NA +1:60595538 1:60600250 LINC01748--LINC01748 BS_Y8D1F5WW ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication/non-canonical_splicing LINC01748 NA LINC01748 NA NA NA NA NA NA +1:219218712 1:219210532 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_Y8D1F5WW ARRIBA other 2 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +15:76009200 15:76052983 NRG4--NRG4 BS_Y8D1F5WW ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +13:57666833 13:32211097 PCDH17--FRY BS_Y8D1F5WW ARRIBA frameshift 5 3 medium [INTRACHROMOSOMAL[chr13:25.33Mb]],inversion/3'-3' PCDH17 NA FRY NA TumorSuppressorGene NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_Y8D1F5WW ARRIBA frameshift 3 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19759323 13:19835689 PSPC1--ZMYM5 BS_Y8D1F5WW ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19730239 13:19838985 PSPC1--ZMYM5 BS_Y8D1F5WW ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +14:49586868 14:20343401 RN7SL1--AL355075.4 BS_Y8D1F5WW STARFUSION other 5 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +14:49586868 14:20343401 RN7SL1--RPPH1 BS_Y8D1F5WW STARFUSION other 5 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA RPPH1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_Y8D1F5WW ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +13:72512666 13:71681910 SNORA68(52065)/uc_338(54547)--DACH1 BS_Y8D1F5WW ARRIBA other 3 3 medium [],deletion SNORA68 uc_338 DACH1 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_Y8D1F5WW ARRIBA frameshift 24 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:114913150 1:114895448 SYCP1--SYCP1 BS_Y8D1F5WW ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.14Mb]],duplication/non-canonical_splicing SYCP1 NA SYCP1 NA NA NA NA NA NA +1:216321883 1:216327654 USH2A--USH2A BS_Y8D1F5WW ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +8:70713576 8:71199140 XKR9--AC022858.1 BS_Y8D1F5WW ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr8:0.37Mb]],deletion XKR9 NA AC022858.1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_YA8RBGD8 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_YA8RBGD8 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_YA8RBGD8 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_YA8RBGD8 ARRIBA frameshift 2 1 medium [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_YA8RBGD8 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_YA8RBGD8 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_YA8RBGD8 ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +18:5891064 6:10756467 TMEM200C--TMEM14B BS_YA8RBGD8 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr18--chr6]],translocation TMEM200C NA TMEM14B NA NA NA NA NA NA +16:4113750 X:15782485 ADCY9--CA5B BS_YB07VF1X ARRIBA frameshift 10 0 high [INTERCHROMOSOMAL[chr16--chrX]],translocation ADCY9 NA CA5B NA NA NA NA NA NA +16:4113750 X:15782485 ADCY9--CA5B BS_YB07VF1X STARFUSION frameshift 10 0 NA [INTERCHROMOSOMAL[chr16--chrX]] ADCY9 NA CA5B NA NA NA NA NA NA +7:70698620 12:133181946 AUTS2--AC026786.1 BS_YB07VF1X ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr7--chr12]],translocation AUTS2 NA AC026786.1 NA NA NA NA NA NA +7:70698620 12:133181946 AUTS2--ZNF268 BS_YB07VF1X ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr7--chr12]],translocation AUTS2 NA ZNF268 NA NA TranscriptionFactor NA NA NA +9:123878951 16:4262701 DENND1A--TFAP4 BS_YB07VF1X ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr9--chr16]],translocation DENND1A NA TFAP4 NA NA Oncogene, TranscriptionFactor NA NA NA +6:33640554 6:34133859 ITPR3--GRM4 BS_YB07VF1X ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr6:0.32Mb]],inversion ITPR3 NA GRM4 NA NA NA NA NA NA +9:128886121 9:123792630 LRRC8A--DENND1A BS_YB07VF1X ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr9:4.95Mb]],inversion LRRC8A NA DENND1A NA NA NA NA NA NA +X:14897238 22:24054873 MOSPD2--CABIN1 BS_YB07VF1X ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chrX--chr22]],translocation MOSPD2 NA CABIN1 NA NA NA NA NA NA +X:14900635 22:24054873 MOSPD2--CABIN1 BS_YB07VF1X ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chrX--chr22]],translocation MOSPD2 NA CABIN1 NA NA NA NA NA NA +9:124733308 9:123820381 NR6A1--DENND1A BS_YB07VF1X ARRIBA frameshift 12 2 high [INTRACHROMOSOMAL[chr9:0.59Mb]],inversion/5'-5' NR6A1 NA DENND1A NA TranscriptionFactor NA NA NA NA +3:64146830 1:29631879 PRICKLE2--AL671862.1(134986)/AC092265.1(76972) BS_YB07VF1X ARRIBA frameshift 2 0 medium [],translocation PRICKLE2 NA AL671862.1 AC092265.1 NA NA NA NA NA +8:140846260 8:116945620 PTK2--AARD(1133)/SLC30A8(4653) BS_YB07VF1X ARRIBA frameshift 4 1 high [],deletion PTK2 NA AARD SLC30A8 Kinase NA NA NA NA +17:80343327 1:21851698 RNF213--HSPG2 BS_YB07VF1X ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr17--chr1]],translocation RNF213 NA HSPG2 NA CosmicCensus, Oncogene Oncogene NA NA NA +17:63238077 5:136780443 TANC2--AC109439.2(25757)/AC109439.1(77185) BS_YB07VF1X ARRIBA frameshift 4 0 high [],translocation TANC2 NA AC109439.2 AC109439.1 NA NA NA NA NA +16:4303311 9:129022423 TFAP4(30236)/GLIS2(11450)--SH3GLB2 BS_YB07VF1X ARRIBA other 1 1 high [],translocation TFAP4 GLIS2 SH3GLB2 NA Oncogene, TranscriptionFactor NA TranscriptionFactor NA NA +9:132403828 9:129006239 TTF1--NUP188 BS_YB07VF1X ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr9:3.37Mb]],inversion TTF1 NA NUP188 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA +4:39532130 19:18850075 UGDH-AS1--UPF1 BS_YB07VF1X ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr4--chr19]],translocation UGDH-AS1 NA UPF1 NA NA NA NA NA NA +19:2841575 19:2832303 ZNF555--ZNF554 BS_YB07VF1X ARRIBA frameshift 5 0 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:0.01Mb],LOCAL_REARRANGEMENT:+:[5662]],duplication ZNF555 NA ZNF554 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_YB2RXRHT ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_YB2RXRHT ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_YB2RXRHT ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_YB2RXRHT ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_YB2RXRHT ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_YB2RXRHT ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_YB2RXRHT ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_YB2RXRHT ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_YB2RXRHT ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_YB2RXRHT ARRIBA frameshift 22 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211107377 AL590132.1--KCNH1 BS_YB2RXRHT ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_YB2RXRHT ARRIBA other 6 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +7:116862650 7:140794467 CAPZA2--BRAF BS_YB2RXRHT ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr7:23.80Mb]],inversion CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:116862650 7:140800481 CAPZA2--BRAF BS_YB2RXRHT ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:23.80Mb]],inversion CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_YB2RXRHT ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_YB2RXRHT ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_YB2RXRHT ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +4:150239875 4:150203795 DCLK2--DCLK2 BS_YB2RXRHT ARRIBA frameshift 14 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.18Mb]],duplication/non-canonical_splicing DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_YB2RXRHT ARRIBA frameshift 18 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +9:23731022 9:23765099 ELAVL2--ELAVL2 BS_YB2RXRHT ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA +2:120175004 2:120116714 EPB41L5--EPB41L5 BS_YB2RXRHT ARRIBA frameshift 4 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.17Mb]],duplication EPB41L5 NA EPB41L5 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_YB2RXRHT ARRIBA in-frame 71 10 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +4:161455004 4:161510424 FSTL5--FSTL5 BS_YB2RXRHT ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +4:47406926 4:47403318 GABRB1--GABRB1 BS_YB2RXRHT ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.43Mb]],duplication/non-canonical_splicing GABRB1 NA GABRB1 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_YB2RXRHT ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_YB2RXRHT ARRIBA in-frame 4 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +9:83659780 9:83680037 IDNK(15650)/UBQLN1(183)--UBQLN1 BS_YB2RXRHT ARRIBA other 1 0 low [],duplication IDNK UBQLN1 UBQLN1 NA Oncogene NA NA NA NA +7:28180463 7:29742147 JAZF1--DPY19L2P3 BS_YB2RXRHT ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chr7:1.47Mb]],inversion JAZF1 NA DPY19L2P3 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_YB2RXRHT ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_YB2RXRHT ARRIBA frameshift 7 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_YB2RXRHT ARRIBA frameshift 22 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_YB2RXRHT ARRIBA in-frame 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_YB2RXRHT ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_YB2RXRHT ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_YB2RXRHT ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211107377 KCNH1--AL590132.1 BS_YB2RXRHT ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_YB2RXRHT ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_YB2RXRHT ARRIBA frameshift 22 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_YB2RXRHT ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +7:130070809 7:130508659 KLHDC10--COPG2 BS_YB2RXRHT ARRIBA in-frame 8 0 high [INTRACHROMOSOMAL[chr7:0.37Mb]],inversion KLHDC10 NA COPG2 NA NA NA NA NA NA +7:130097007 7:130508659 KLHDC10--COPG2 BS_YB2RXRHT ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:0.37Mb]],inversion KLHDC10 NA COPG2 NA NA NA NA NA NA +7:105038199 7:96405074 KMT2E--RNU7-188P(27154)/SEM1(76552) BS_YB2RXRHT ARRIBA other 3 0 high [],duplication KMT2E NA RNU7-188P SEM1 NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_YB2RXRHT ARRIBA other 15 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_YB2RXRHT ARRIBA in-frame 9 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_YB2RXRHT ARRIBA in-frame 12 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_YB2RXRHT ARRIBA in-frame 13 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +12:81325777 12:81384244 PPFIA2--PPFIA2 BS_YB2RXRHT ARRIBA frameshift 8 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.50Mb]],duplication/non-canonical_splicing PPFIA2 NA PPFIA2 NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_YB2RXRHT ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_YB2RXRHT ARRIBA other 24 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:127904819 7:104353468 SND1--LHFPL3 BS_YB2RXRHT ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr7:22.74Mb]],inversion/3'-3' SND1 NA LHFPL3 NA CosmicCensus NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_YB2RXRHT ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_YB2RXRHT ARRIBA other 3 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +7:27769834 7:140787584 TAX1BP1--BRAF BS_YB2RXRHT ARRIBA in-frame 5 2 high [INTRACHROMOSOMAL[chr7:112.87Mb]],inversion TAX1BP1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:138514473 7:140801883 TRIM24--BRAF BS_YB2RXRHT ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:2.13Mb]],deletion/5'-5' TRIM24 NA BRAF NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +19:46989675 19:46918488 ARHGAP35--AP2S1(67496)/ARHGAP35(188) BS_YBJBSRHV ARRIBA frameshift 1 3 high [],duplication ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA +5:176350613 5:157648896 KIAA1191--SOX30 BS_YBJBSRHV ARRIBA frameshift 1 3 high [INTRACHROMOSOMAL[chr5:18.67Mb]],deletion KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA +5:176352622 5:157648896 KIAA1191--SOX30 BS_YBJBSRHV ARRIBA in-frame 1 3 high [INTRACHROMOSOMAL[chr5:18.67Mb]],deletion KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA +5:176361602 5:157648896 KIAA1191--SOX30 BS_YBJBSRHV ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr5:18.67Mb]],deletion KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA +5:176350613 5:157638722 KIAA1191--SOX30 BS_YBJBSRHV ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr5:18.67Mb]],deletion KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA +5:176350181 5:157664758 KIAA1191--SOX30 BS_YBJBSRHV ARRIBA other 1 4 medium [INTRACHROMOSOMAL[chr5:18.67Mb]],deletion KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA +5:176361602 5:157626721 KIAA1191--SOX30 BS_YBJBSRHV ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:18.67Mb]],deletion KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA +16:1941118 16:677098 MSRB1--RHBDL1 BS_YBJBSRHV ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr16:1.26Mb]],inversion MSRB1 NA RHBDL1 NA NA NA NA NA NA +2:50465442 2:12111690 NRXN1--MIR3681HG BS_YBJBSRHV ARRIBA frameshift 6 2 high [INTRACHROMOSOMAL[chr2:37.34Mb]],deletion/5'-5' NRXN1 NA MIR3681HG NA NA NA NA NA NA +19:747977 19:1749447 PALM--AC005256.1(702)/ONECUT3(2926) BS_YBJBSRHV ARRIBA other 2 1 medium [],deletion PALM NA AC005256.1 ONECUT3 NA NA NA TranscriptionFactor NA +2:247538 2:199848969 SH3YL1--FTCDNL1 BS_YBJBSRHV ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr2:199.49Mb]],duplication SH3YL1 NA FTCDNL1 NA NA NA NA NA NA +15:38339895 4:163325747 SPRED1--NPY1R BS_YBJBSRHV ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr15--chr4]],translocation/5'-5' SPRED1 NA NPY1R NA NA Oncogene NA NA NA +15:38339895 4:163345714 SPRED1--NPY5R BS_YBJBSRHV ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr15--chr4]],translocation SPRED1 NA NPY5R NA NA NA NA NA NA +14:93487755 14:93466698 UNC79--UNC79 BS_YBJBSRHV ARRIBA frameshift 6 0 medium [SELFIE,INTRACHROMOSOMAL[chr14:0.37Mb]],duplication UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA +X:64976325 X:55608203 ZC4H2--AL627224.1(8097)/FOXR2(15197) BS_YBJBSRHV ARRIBA frameshift 26 0 high [],inversion ZC4H2 NA AL627224.1 FOXR2 NA NA NA TranscriptionFactor, Oncogene NA +X:64976325 X:55608203 ZC4H2--FOXR2 BS_YBJBSRHV ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chrX:9.29Mb]],inversion ZC4H2 NA FOXR2 NA NA TranscriptionFactor, Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_YCREDZTJ ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_YCREDZTJ ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:41766135 4:43020354 AC105389.3--GRXCR1 BS_YCREDZTJ ARRIBA other 17 1 high [INTRACHROMOSOMAL[chr4:1.07Mb]],inversion/3'-3' AC105389.3 NA GRXCR1 NA NA NA NA NA NA +4:42656825 4:41766293 ATP8A1--AC105389.3 BS_YCREDZTJ ARRIBA frameshift 38 1 high [INTRACHROMOSOMAL[chr4:0.58Mb]],deletion/5'-5' ATP8A1 NA AC105389.3 NA NA NA NA NA NA +4:42656825 4:43020354 ATP8A1--GRXCR1 BS_YCREDZTJ ARRIBA frameshift 14 1 high [INTRACHROMOSOMAL[chr4:0.24Mb]],inversion ATP8A1 NA GRXCR1 NA NA NA NA NA NA +4:42656825 4:43030361 ATP8A1--GRXCR1 BS_YCREDZTJ ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr4:0.24Mb]],inversion ATP8A1 NA GRXCR1 NA NA NA NA NA NA +4:42656825 4:43020354 ATP8A1--GRXCR1 BS_YCREDZTJ STARFUSION frameshift 15 1 NA [INTRACHROMOSOMAL[chr4:0.24Mb]] ATP8A1 NA GRXCR1 NA NA NA NA NA NA +3:178801793 3:178966954 KCNMB2-AS1--KCNMB2-AS1(106549)/ZMAT3(50269) BS_YCREDZTJ ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178748404 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_YCREDZTJ ARRIBA other 1 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +4:41661510 4:42340549 LIMCH1--AC024022.1 BS_YCREDZTJ ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr4:0.58Mb]],deletion/5'-5' LIMCH1 NA AC024022.1 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_YCREDZTJ ARRIBA frameshift 14 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_YCREDZTJ ARRIBA other 32 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:42001780 4:41657262 SLC30A9--LIMCH1 BS_YCREDZTJ ARRIBA frameshift 7 0 high [INTRACHROMOSOMAL[chr4:0.29Mb]],inversion/3'-3' SLC30A9 NA LIMCH1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_YE1MAQYJ ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_YE1MAQYJ ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:17139072 10:17174660 AC067747.1(1487)/TRDMT1(3182)--TRDMT1 BS_YE1MAQYJ ARRIBA other 3 0 medium [],duplication AC067747.1 TRDMT1 TRDMT1 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_YE1MAQYJ ARRIBA other 2 3 low [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_YE1MAQYJ STARFUSION other 17 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +15:93592733 15:93553605 AC110023.1--AC091078.1 BS_YE1MAQYJ ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +15:93592733 15:93557472 AC110023.1--AC091078.1 BS_YE1MAQYJ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_YE1MAQYJ ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_YE1MAQYJ ARRIBA in-frame 4 0 high [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_YE1MAQYJ ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +2:54928751 2:54891054 EML6--EML6 BS_YE1MAQYJ ARRIBA in-frame 3 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.25Mb]],duplication/non-canonical_splicing EML6 NA EML6 NA NA NA NA NA NA +4:161455004 4:161500134 FSTL5--FSTL5 BS_YE1MAQYJ ARRIBA frameshift 15 2 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +9:97079287 9:97095256 GAS2L1P2--VN1R51P(618)/FAM220CP(26403) BS_YE1MAQYJ ARRIBA other 10 0 high [],duplication GAS2L1P2 NA VN1R51P FAM220CP NA NA NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_YE1MAQYJ ARRIBA frameshift 3 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +5:3531753 5:3566558 LINC01019--LINC01019(30464)/IRX1(29496) BS_YE1MAQYJ ARRIBA other 5 1 high [],duplication LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA +10:88594144 10:88365733 LIPJ--RNLS BS_YE1MAQYJ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:0.00Mb],LOCAL_INVERSION:+:-:[2223]],duplication/5'-5' LIPJ NA RNLS NA NA NA NA NA NA +14:60019260 14:59997656 LRRC9--LRRC9 BS_YE1MAQYJ ARRIBA frameshift 13 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_YE1MAQYJ ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_YE1MAQYJ ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +10:88631232 10:88602576 RPL7P34(12298)/LIPF(33209)--LIPJ BS_YE1MAQYJ ARRIBA other 3 1 high [],duplication RPL7P34 LIPF LIPJ NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_YE1MAQYJ ARRIBA other 48 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_YE1MAQYJ ARRIBA other 2 1 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +14:37701526 14:37680151 TTC6--TTC6 BS_YE1MAQYJ ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.45Mb]],duplication/non-canonical_splicing TTC6 NA TTC6 NA NA NA NA NA NA +1:85110135 1:85104524 WDR63--WDR63 BS_YE1MAQYJ ARRIBA in-frame 14 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication/non-canonical_splicing WDR63 NA WDR63 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_YEB88D32 ARRIBA other 3 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +6:64590223 6:64593309 EYS--EYS BS_YEB88D32 ARRIBA frameshift 17 1 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +2:131613103 2:131575035 POTEKP--MED15P4(38047)/POTEKP(16717) BS_YEB88D32 ARRIBA other 5 0 low [],duplication POTEKP NA MED15P4 POTEKP NA NA NA NA NA +9:131394263 9:132986659 PRRC2B--GFI1B BS_YEB88D32 ARRIBA other 32 3 high [INTRACHROMOSOMAL[chr9:1.44Mb]],deletion PRRC2B NA GFI1B NA NA Oncogene, TranscriptionFactor NA NA NA +9:131394263 9:132986659 PRRC2B--GFI1B BS_YEB88D32 STARFUSION other 32 4 NA [INTRACHROMOSOMAL[chr9:1.44Mb]] PRRC2B NA GFI1B NA NA Oncogene, TranscriptionFactor NA NA NA +17:43233751 19:40600068 RNU2-1--LTBP4 BS_YEB88D32 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr17--chr19]],translocation RNU2-1 NA LTBP4 NA NA NA NA NA NA +9:130855096 5:160422302 ABL1--PTTG1 BS_YEQVW4ND ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr9--chr5]],translocation ABL1 NA PTTG1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_YEQVW4ND ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_YEQVW4ND ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:115262930 3:115676013 AC046136.1--GAP43 BS_YEQVW4ND ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA +21:41226354 19:58285717 BACE2--AC020915.2 BS_YEQVW4ND ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr21--chr19]],translocation BACE2 NA AC020915.2 NA NA NA NA NA NA +21:41226354 19:58285717 BACE2--AC020915.6 BS_YEQVW4ND ARRIBA in-frame 2 0 high [INTERCHROMOSOMAL[chr21--chr19]],translocation BACE2 NA AC020915.6 NA NA NA NA NA NA +21:41226354 19:58285717 BACE2--ZNF8 BS_YEQVW4ND ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr21--chr19]],translocation BACE2 NA ZNF8 NA NA TranscriptionFactor NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_YEQVW4ND ARRIBA in-frame 20 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +9:713464 9:84741892 KANK1--NTRK2 BS_YEQVW4ND ARRIBA in-frame 23 0 high [INTRACHROMOSOMAL[chr9:83.92Mb]],deletion KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA +9:713464 9:84744973 KANK1--NTRK2 BS_YEQVW4ND ARRIBA in-frame 5 0 medium [INTRACHROMOSOMAL[chr9:83.92Mb]],deletion KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA +9:713464 9:84741892 KANK1--NTRK2 BS_YEQVW4ND STARFUSION in-frame 23 1 NA [INTRACHROMOSOMAL[chr9:83.92Mb]] KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_YEQVW4ND ARRIBA other 2 0 medium [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +12:25995130 12:24213417 RASSF8--AC069208.1 BS_YEQVW4ND ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr12:1.40Mb]],inversion RASSF8 NA AC069208.1 NA TumorSuppressorGene NA NA NA NA +12:25959148 12:24213417 RASSF8--AC069208.1 BS_YEQVW4ND ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:1.40Mb]],inversion RASSF8 NA AC069208.1 NA TumorSuppressorGene NA NA NA NA +12:25995130 12:24237822 RASSF8--SOX5-AS1 BS_YEQVW4ND ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr12:1.72Mb]],duplication RASSF8 NA SOX5-AS1 NA TumorSuppressorGene NA NA NA NA +12:25959148 12:24237822 RASSF8--SOX5-AS1 BS_YEQVW4ND ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr12:1.72Mb]],duplication RASSF8 NA SOX5-AS1 NA TumorSuppressorGene NA NA NA NA +9:35657755 1:156426872 RMRP--C1orf61 BS_YEQVW4ND ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr9--chr1]],translocation RMRP NA C1orf61 NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_YEQVW4ND ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:162601514 1:162576777 UAP1(1672)/DDR2(29859)--UAP1 BS_YEQVW4ND ARRIBA other 3 0 high [],duplication UAP1 DDR2 UAP1 NA NA NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA +19:30284141 5:143120988 ZNF536--ARHGAP26 BS_YEQVW4ND ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr19--chr5]],translocation ZNF536 NA ARHGAP26 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA +19:30352484 5:143120988 ZNF536--ARHGAP26 BS_YEQVW4ND ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr19--chr5]],translocation ZNF536 NA ARHGAP26 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA +19:30296243 5:143120988 ZNF536--ARHGAP26 BS_YEQVW4ND ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr19--chr5]],translocation ZNF536 NA ARHGAP26 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA +2:65601157 5:79130933 AC007389.3--BHMT BS_YETBN0RQ ARRIBA other 9 0 medium [FA_CancerSupp,INTERCHROMOSOMAL[chr2--chr5]],translocation AC007389.3 NA BHMT NA NA NA NA NA NA +8:38122348 4:82931056 ASH2L--LIN54 BS_YETBN0RQ ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr8--chr4]],translocation ASH2L NA LIN54 NA NA TranscriptionFactor NA NA NA +12:32107544 12:32005837 BICD1--AC016957.2(4615)/AC016957.1(1290) BS_YETBN0RQ ARRIBA frameshift 15 0 high [],inversion BICD1 NA AC016957.2 AC016957.1 NA NA NA NA NA +8:43180201 5:79130933 HGSNAT--BHMT BS_YETBN0RQ ARRIBA other 8 1 high [INTERCHROMOSOMAL[chr8--chr5]],translocation/3'-3' HGSNAT NA BHMT NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_YETBN0RQ ARRIBA other 8 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_YEW22W35 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_YEW22W35 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:241756014 13:48814006 D2HGDH--PSME2P2(42179)/AL161421.1(160961) BS_YEW22W35 ARRIBA frameshift 12 0 high [],translocation D2HGDH NA PSME2P2 AL161421.1 NA NA NA NA NA +10:127343746 10:128947163 DOCK1--AL355537.1(30892)/AL355537.2(11609) BS_YEW22W35 ARRIBA frameshift 3 2 high [],deletion DOCK1 NA AL355537.1 AL355537.2 NA NA NA NA NA +13:48307406 2:242105126 RB1--LINC01881 BS_YEW22W35 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr13--chr2]],translocation/5'-5' RB1 NA LINC01881 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_YEW22W35 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:200419496 13:49786521 SPATS2L--KPNA3 BS_YEW22W35 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr2--chr13]],translocation/5'-5' SPATS2L NA KPNA3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_YG0A13JH ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_YG0A13JH ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_YG0A13JH ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:134520509 6:134525543 AL078590.2--AL078590.3 BS_YH05F9DB ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr6:0.00Mb],LOCAL_REARRANGEMENT:-:[4729]],duplication AL078590.2 NA AL078590.3 NA NA NA NA NA NA +6:134520509 6:134531064 AL078590.2--AL078590.3 BS_YH05F9DB ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr6:0.00Mb],LOCAL_REARRANGEMENT:-:[4729]],duplication AL078590.2 NA AL078590.3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_YMAJC22S ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_YMAJC22S ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_YMAJC22S ARRIBA other 11 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +2:139368484 2:139339254 AC062021.1--AHCYP4(436507)/AC062021.1(26911) BS_YMAJC22S ARRIBA other 10 1 high [],duplication AC062021.1 NA AHCYP4 AC062021.1 NA NA NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_YMAJC22S ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_YMAJC22S ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_YMAJC22S ARRIBA frameshift 15 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_YMAJC22S ARRIBA frameshift 7 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_YMAJC22S ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_YMAJC22S ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_YMAJC22S ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_YMAJC22S ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_YMAJC22S ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +10:12998338 10:13074100 CCDC3--CCDC3 BS_YMAJC22S ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_YMAJC22S ARRIBA frameshift 20 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +2:196047352 2:196058116 DNAH7--DNAH7 BS_YMAJC22S ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.33Mb]],duplication/non-canonical_splicing DNAH7 NA DNAH7 NA NA NA NA NA NA +9:271729 X:17363414 DOCK8--snoU13(5381)/NHS(12006) BS_YMAJC22S ARRIBA frameshift 4 0 high [],translocation DOCK8 NA snoU13 NHS NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_YMAJC22S ARRIBA in-frame 56 7 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_YMAJC22S ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_YMAJC22S ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +7:127242695 7:127243515 GRM8--GRM8 BS_YMAJC22S ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +7:43501322 7:43492075 HECW1--HECW1 BS_YMAJC22S ARRIBA frameshift 12 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.45Mb]],duplication/non-canonical_splicing HECW1 NA HECW1 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_YMAJC22S ARRIBA frameshift 15 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_YMAJC22S ARRIBA frameshift 7 3 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_YMAJC22S ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_YMAJC22S ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_YMAJC22S ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_YMAJC22S ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_YMAJC22S ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_YMAJC22S ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_YMAJC22S ARRIBA frameshift 15 3 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_YMAJC22S ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_YMAJC22S ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_YMAJC22S ARRIBA other 6 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +X:20042502 X:20052988 MAP7D2--MAP7D2 BS_YMAJC22S ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chrX:0.11Mb]],duplication/non-canonical_splicing MAP7D2 NA MAP7D2 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_YMAJC22S ARRIBA other 8 0 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +12:44665484 12:44714741 NELL2--NELL2 BS_YMAJC22S ARRIBA in-frame 12 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_YMAJC22S ARRIBA in-frame 20 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +X:18789273 X:18749792 PPEF1--PPEF1 BS_YMAJC22S ARRIBA frameshift 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.15Mb]],duplication/non-canonical_splicing PPEF1 NA PPEF1 NA NA NA NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_YMAJC22S ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_YMAJC22S ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:121318540 3:121279805 STXBP5L--STXBP5L BS_YMAJC22S ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.52Mb]],duplication/non-canonical_splicing STXBP5L NA STXBP5L NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_YNEQJ6AH ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_YNEQJ6AH ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_YNEQJ6AH ARRIBA other 14 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_YNEQJ6AH ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_YNEQJ6AH ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_YNEQJ6AH ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_YNEQJ6AH ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_YNEQJ6AH ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +5:61755944 5:61748602 C5orf64(4181)/AC026434.2(76003)--C5orf64 BS_YNEQJ6AH ARRIBA other 3 0 low [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_YNEQJ6AH ARRIBA in-frame 12 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:55479528 6:55542140 HMGCLL1--HMGCLL1 BS_YNEQJ6AH ARRIBA frameshift 3 0 medium [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication HMGCLL1 NA HMGCLL1 NA NA NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_YNEQJ6AH ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_YNEQJ6AH ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_YNEQJ6AH ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_YNEQJ6AH ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_YNEQJ6AH ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_YNEQJ6AH ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_YNEQJ6AH ARRIBA other 4 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_YNEQJ6AH ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:128141981 5:128114212 SLC12A2--SLC12A2 BS_YNEQJ6AH ARRIBA in-frame 5 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.11Mb]],duplication/non-canonical_splicing SLC12A2 NA SLC12A2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_YVMEEBKC ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_YVMEEBKC ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_YVMEEBKC ARRIBA other 6 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +18:79253541 18:79193183 ATP9B--ATP9B BS_YVMEEBKC ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_YVMEEBKC ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_YVMEEBKC ARRIBA in-frame 14 1 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +1:54850230 4:85468265 DHCR24--AC097488.1(221353)/ARHGAP24(6849) BS_YVMEEBKC ARRIBA other 2 0 low [],translocation DHCR24 NA AC097488.1 ARHGAP24 NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_YVMEEBKC ARRIBA in-frame 6 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_YVMEEBKC ARRIBA other 18 2 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_YVMEEBKC ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_YVMEEBKC ARRIBA other 2 1 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_YVMEEBKC ARRIBA in-frame 15 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +11:33545378 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_YVMEEBKC ARRIBA frameshift 4 1 high [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_YVMEEBKC ARRIBA other 13 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:51794641 12:51786542 SCN8A--SCN8A BS_YVMEEBKC ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.22Mb]],duplication/non-canonical_splicing SCN8A NA SCN8A NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_YVMEEBKC ARRIBA other 11 1 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_YY5B2XDD ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_YY5B2XDD ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_YY5B2XDD ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_YY5B2XDD ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_YY5B2XDD ARRIBA in-frame 3 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_YY5B2XDD ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:98574457 4:98574905 TSPAN5--TSPAN5 BS_YY5B2XDD ARRIBA other 6 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.19Mb]],duplication/non-canonical_splicing TSPAN5 NA TSPAN5 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_YZ2Z1Q6Y ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_YZ2Z1Q6Y ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_YZ2Z1Q6Y ARRIBA in-frame 3 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_YZ2Z1Q6Y ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_Z0AVVB1V ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_Z0AVVB1V ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_Z0AVVB1V ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_Z0AVVB1V STARFUSION other 9 17 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_Z0AVVB1V ARRIBA other 4 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140781693 KIAA1549--BRAF BS_Z0AVVB1V ARRIBA in-frame 7 3 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_Z0AVVB1V ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:27140083 7:150325841 AC004080.6--LRRC61 BS_Z1A875MW ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr7:123.17Mb]],inversion AC004080.6 NA LRRC61 NA NA NA NA NA NA +7:27140083 7:150336718 AC004080.6--LRRC61 BS_Z1A875MW ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:123.17Mb]],inversion AC004080.6 NA LRRC61 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_Z1A875MW ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_Z1A875MW ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_Z1A875MW ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +14:20343075 14:49586589 AL355075.4--AL139099.5 BS_Z1A875MW STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA AL139099.5 NA NA NA NA NA NA +14:20343077 14:49586593 AL355075.4--RN7SL1 BS_Z1A875MW STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL355075.4 NA RN7SL1 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_Z1A875MW ARRIBA in-frame 29 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_Z1A875MW ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +7:74706433 7:140783157 GTF2I--BRAF BS_Z1A875MW ARRIBA in-frame 17 3 high [INTRACHROMOSOMAL[chr7:65.96Mb]],inversion GTF2I NA BRAF NA TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:74706433 7:140783157 GTF2I--BRAF BS_Z1A875MW STARFUSION in-frame 16 3 NA [INTRACHROMOSOMAL[chr7:65.96Mb]] GTF2I NA BRAF NA TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:27140083 7:150325841 HOXA3--LRRC61 BS_Z1A875MW ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr7:123.17Mb]],inversion HOXA3 NA LRRC61 NA Oncogene, TranscriptionFactor NA NA NA NA +7:27140083 7:150336718 HOXA3--LRRC61 BS_Z1A875MW ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:123.17Mb]],inversion HOXA3 NA LRRC61 NA Oncogene, TranscriptionFactor NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_Z1A875MW ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_Z1A875MW ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +7:4997341 7:5329968 RNF216P1--TNRC18 BS_Z1A875MW ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr7:0.27Mb]],inversion RNF216P1 NA TNRC18 NA NA NA NA NA NA +14:20343077 14:49586593 RPPH1--AL139099.5 BS_Z1A875MW STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA AL139099.5 NA NA NA NA NA NA +14:20343075 14:49586589 RPPH1--RN7SL1 BS_Z1A875MW STARFUSION other 3 10 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RPPH1 NA RN7SL1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_Z1A875MW ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_Z2NWPQKF ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_Z2NWPQKF ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_Z2NWPQKF ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_Z2NWPQKF ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_Z2NWPQKF ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_Z2NWPQKF ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_Z2NWPQKF ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_Z2NWPQKF ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_Z2NWPQKF ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_Z2NWPQKF ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_Z2NWPQKF ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_Z2NWPQKF ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_Z2NWPQKF ARRIBA frameshift 4 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_Z2NWPQKF ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_Z2NWPQKF ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +3:167575918 3:167633532 WDR49--WDR49 BS_Z2NWPQKF ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.18Mb]],duplication/non-canonical_splicing WDR49 NA WDR49 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_Z45HD492 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_Z45HD492 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_Z45HD492 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +14:89870643 14:89932627 EFCAB11--EFCAB11 BS_Z45HD492 ARRIBA frameshift 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_Z45HD492 ARRIBA frameshift 53 5 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_Z45HD492 ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +17:46248159 17:46152966 MAPK8IP1P1(3115)/AC005829.2(11392)--KANSL1 BS_Z45HD492 ARRIBA other 3 0 medium [],inversion MAPK8IP1P1 AC005829.2 KANSL1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_Z45HD492 ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:216321883 1:216327654 USH2A--USH2A BS_Z45HD492 ARRIBA frameshift 7 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.80Mb]],duplication/non-canonical_splicing USH2A NA USH2A NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_Z6BWR941 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_Z6BWR941 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_Z6BWR941 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +1:171247581 1:170807604 AL445673.1--PRRX1(68185)/MROH9(127867) BS_Z6BWR941 ARRIBA other 1 3 medium [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_Z6BWR941 ARRIBA other 13 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +5:61761022 5:61703866 C5orf64(9259)/AC026434.2(70925)--C5orf64 BS_Z6BWR941 ARRIBA other 2 0 high [],duplication C5orf64 AC026434.2 C5orf64 NA NA NA NA NA NA +2:94737981 2:94731554 CNN2P8--CNN2P11(5619)/AL845331.1(3101) BS_Z6BWR941 ARRIBA other 14 0 medium [],duplication CNN2P8 NA CNN2P11 AL845331.1 NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_Z6BWR941 ARRIBA in-frame 10 4 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +7:137521866 7:137623554 DGKI--DGKI BS_Z6BWR941 ARRIBA frameshift 5 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_Z6BWR941 ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +17:44906802 14:49862779 GFAP--RN7SL2 BS_Z6BWR941 STARFUSION other 33 39 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +3:178801793 3:178965496 KCNMB2-AS1--KCNMB2-AS1(105091)/ZMAT3(51727) BS_Z6BWR941 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178859489 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_Z6BWR941 ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_Z6BWR941 ARRIBA in-frame 13 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +6:132134483 6:132090446 LINC01013--AL021408.1 BS_Z6BWR941 ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA +6:132134483 6:132098931 LINC01013--AL021408.1 BS_Z6BWR941 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr6:0.03Mb],LOCAL_REARRANGEMENT:+:[32636]],duplication LINC01013 NA AL021408.1 NA NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_Z6BWR941 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +11:86823593 11:86788896 PRSS23--AP003059.2(23631)/PRSS23(2163) BS_Z6BWR941 ARRIBA frameshift 3 0 medium [],duplication PRSS23 NA AP003059.2 PRSS23 NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_Z6BWR941 ARRIBA frameshift 3 0 high [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_Z6BWR941 ARRIBA frameshift 2 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19759323 13:19835689 PSPC1--ZMYM5 BS_Z6BWR941 ARRIBA frameshift 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_Z6BWR941 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_Z6BWR941 ARRIBA other 9 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_Z6MC4N8D ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_Z6MC4N8D ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_Z6MC4N8D ARRIBA other 11 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_Z6MC4N8D ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_Z6MC4N8D ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_Z6MC4N8D ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_Z6MC4N8D ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_Z6MC4N8D ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_Z6MC4N8D ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:43184126 11:75263834 CSGALNACT2--AP001972.5(1368)/ARRB1(348) BS_Z72QAZC7 ARRIBA other 2 0 low [],translocation CSGALNACT2 NA AP001972.5 ARRB1 NA NA NA NA NA +2:1223344 11:72013518 SNTG2--NUMA1 BS_Z72QAZC7 ARRIBA other 2 1 medium [INTERCHROMOSOMAL[chr2--chr11]],translocation SNTG2 NA NUMA1 NA NA CosmicCensus, Oncogene NA NA NA +14:20343091 6:52995705 AL355075.4--7SK BS_Z7890YNR STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr14--chr1]] AL355075.4 NA 7SK NA NA NA NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_Z7890YNR ARRIBA in-frame 220 27 high [INTRACHROMOSOMAL[chr11:1.88Mb]],duplication C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:63764868 11:65662205 C11orf95--RELA BS_Z7890YNR STARFUSION in-frame 234 31 NA [INTRACHROMOSOMAL[chr11:1.88Mb]] C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA +11:47765270 11:62337967 FNBP4--ASRGL1 BS_Z7890YNR ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA +11:47765270 11:62356987 FNBP4--ASRGL1 BS_Z7890YNR ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA +11:47765270 11:62356325 FNBP4--ASRGL1 BS_Z7890YNR ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:14.57Mb]],inversion FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA +12:53989469 12:72200183 HOXC10--TRHDE BS_Z7890YNR ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr12:18.28Mb]],deletion HOXC10 NA TRHDE NA TranscriptionFactor NA NA NA NA +12:53986010 12:72286681 HOXC10--TRHDE BS_Z7890YNR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:18.28Mb]],deletion HOXC10 NA TRHDE NA TranscriptionFactor NA NA NA NA +2:202811746 2:203138162 ICA1L--NBEAL1 BS_Z7890YNR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.14Mb]],inversion ICA1L NA NBEAL1 NA NA NA NA NA NA +2:202811746 2:203135677 ICA1L--NBEAL1 BS_Z7890YNR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.14Mb]],inversion ICA1L NA NBEAL1 NA NA NA NA NA NA +2:203133146 2:202789087 NBEAL1--ICA1L BS_Z7890YNR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.14Mb]],inversion NBEAL1 NA ICA1L NA NA NA NA NA NA +2:203133146 2:202796964 NBEAL1--ICA1L BS_Z7890YNR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.14Mb]],inversion NBEAL1 NA ICA1L NA NA NA NA NA NA +22:36028240 11:132943010 RBFOX2--OPCML BS_Z7890YNR ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr22--chr11]],translocation RBFOX2 NA OPCML NA NA TumorSuppressorGene, Oncogene NA NA NA +14:20343089 6:52995707 RPPH1--7SK BS_Z7890YNR STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr14--chr1]] RPPH1 NA 7SK NA NA NA NA NA NA +12:23604387 12:12521463 SOX5--DUSP16 BS_Z7890YNR ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr12:10.97Mb]],deletion SOX5 NA DUSP16 NA Oncogene, TranscriptionFactor NA NA NA NA +14:77556391 4:185144324 SPTLC2--SLC25A4 BS_Z7890YNR ARRIBA other 2 1 medium [INTERCHROMOSOMAL[chr14--chr4]],translocation/5'-5' SPTLC2 NA SLC25A4 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_Z7G68ZS2 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +2:89009977 2:88861556 IGKV1-9--AC244205.1 BS_Z7G68ZS2 STARFUSION other 14 0 NA [INTRACHROMOSOMAL[chr2:0.15Mb]] IGKV1-9 NA AC244205.1 NA NA NA NA NA NA +2:89085174 2:88861564 IGKV3-15--AC244205.1 BS_Z7G68ZS2 STARFUSION other 50 13 NA [INTRACHROMOSOMAL[chr2:0.22Mb]] IGKV3-15 NA AC244205.1 NA NA NA NA NA NA +7:19405370 7:19299328 AC007091.1--AC003986.1(153075)/AC007091.1(54206) BS_Z7PKVY9J ARRIBA other 3 0 high [],duplication AC007091.1 NA AC003986.1 AC007091.1 NA NA NA NA NA +7:19609322 7:19576287 AC007091.1(30716)/TWISTNB(86140)--AC007091.1 BS_Z7PKVY9J ARRIBA other 13 0 high [],duplication AC007091.1 TWISTNB AC007091.1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_Z7PKVY9J ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +1:46080642 1:46303394 AL358075.4--LRRC41 BS_Z7PKVY9J ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr1:0.08Mb],LOCAL_REARRANGEMENT:-:[84708]],duplication AL358075.4 NA LRRC41 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_Z7PKVY9J ARRIBA other 6 1 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_Z7PKVY9J ARRIBA in-frame 7 3 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--MSANTD3-TMEFF1 BS_Z7PKVY9J ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_Z7PKVY9J ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100547744 CAVIN4--MSANTD3-TMEFF1 BS_Z7PKVY9J ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_Z7PKVY9J ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_Z7PKVY9J ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100547744 CAVIN4--TMEFF1 BS_Z7PKVY9J ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_Z7PKVY9J ARRIBA other 3 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_Z7PKVY9J ARRIBA frameshift 9 3 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_Z7PKVY9J ARRIBA frameshift 8 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +9:5072626 9:5021963 JAK2--JAK2 BS_Z7PKVY9J ARRIBA frameshift 38 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +18:7044722 18:7049257 LAMA1--LAMA1 BS_Z7PKVY9J ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA +17:21091179 17:21090268 LINC01563(564)/DHRS7B(32185)--LINC01563 BS_Z7PKVY9J ARRIBA other 3 0 low [],duplication LINC01563 DHRS7B LINC01563 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_Z7PKVY9J ARRIBA other 8 1 low [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +8:124556298 8:27605334 MTSS1--CLU BS_Z7PKVY9J ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr8:96.94Mb]],deletion MTSS1 NA CLU NA TumorSuppressorGene TumorSuppressorGene, Oncogene NA NA NA +1:46080642 1:46303394 PIK3R3--LRRC41 BS_Z7PKVY9J ARRIBA frameshift 3 0 high [ChimerSeq,INTRACHROMOSOMAL[chr1:0.13Mb]],duplication PIK3R3 NA LRRC41 NA NA NA NA NA TCGAFusion +18:9862247 3:106112681 RAB31--CBLB(243129)/AC079382.1(213056) BS_Z7PKVY9J ARRIBA other 3 0 medium [],translocation RAB31 NA CBLB AC079382.1 NA CosmicCensus, Oncogene NA NA NA +3:167575918 3:167663242 WDR49--WDR49(9259)/PDCD10(20056) BS_Z7PKVY9J ARRIBA frameshift 1 0 low [],duplication WDR49 NA WDR49 PDCD10 NA NA NA NA NA +3:52284528 3:52634815 WDR82--PBRM1 BS_Z7PKVY9J ARRIBA other 8 0 medium [INTRACHROMOSOMAL[chr3:0.26Mb]],duplication WDR82 NA PBRM1 NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_Z7Y2466H ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_Z7Y2466H ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +1:58506060 1:58539310 DAB1--OMA1 BS_Z7Y2466H ARRIBA other 6 0 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58536741 DAB1--OMA1 BS_Z7Y2466H ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58253807 1:58539310 DAB1--OMA1 BS_Z7Y2466H ARRIBA other 2 2 medium [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58527261 1:58539310 DAB1--OMA1 BS_Z7Y2466H ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +1:58506060 1:58534331 DAB1--OMA1 BS_Z7Y2466H ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.13Mb]],duplication DAB1 NA OMA1 NA NA NA NA NA TCGAFusion +17:44906802 14:49862779 GFAP--RN7SL2 BS_Z7Y2466H STARFUSION other 7 17 NA [INTERCHROMOSOMAL[chr17--chr14]] GFAP NA RN7SL2 NA NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_Z7Y2466H ARRIBA other 2 0 low [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +7:138861139 7:140781693 KIAA1549--BRAF BS_Z7Y2466H ARRIBA in-frame 9 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +14:38745144 14:38334252 LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_Z7Y2466H ARRIBA other 2 1 medium [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_Z7Y2466H ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +15:77158503 15:77735053 PEAK1--LINGO1 BS_Z7Y2466H ARRIBA frameshift 5 0 high [CCLE,FA_CancerSupp,INTRACHROMOSOMAL[chr15:0.19Mb]],duplication PEAK1 NA LINGO1 NA Kinase NA NA NA NA +10:94032252 10:94005450 PLCE1--PIPSL(43910)/PLCE1(25362) BS_Z7Y2466H ARRIBA frameshift 1 0 low [],duplication PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_Z7Y2466H ARRIBA other 18 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:107380585 3:107462735 AC063944.1--LINC01990 BS_Z85M2R3N ARRIBA other 11 2 high [INTRACHROMOSOMAL[chr3:0.01Mb],LOCAL_INVERSION:-:+:[9626]],duplication/5'-5' AC063944.1 NA LINC01990 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_Z85M2R3N ARRIBA other 29 5 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +3:167140689 3:167282495 AC092965.1(74369)/ZBBX(99598)--ZBBX BS_Z85M2R3N ARRIBA other 4 0 medium [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +4:16421133 4:16238771 AC097515.1--TAPT1-AS1 BS_Z85M2R3N ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +4:16400533 4:16238771 AC097515.1--TAPT1-AS1 BS_Z85M2R3N ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.08Mb],LOCAL_REARRANGEMENT:+:[80290]],duplication AC097515.1 NA TAPT1-AS1 NA NA NA NA NA NA +8:71527549 8:71535848 AC099805.1--AC099805.1 BS_Z85M2R3N ARRIBA other 3 1 medium [SELFIE,INTRACHROMOSOMAL[chr8:0.19Mb]],duplication AC099805.1 NA AC099805.1 NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_Z85M2R3N STARFUSION other 17 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +4:151352900 4:151405608 AC104819.3--AC104819.3(52384)/AC079795.1(1943) BS_Z85M2R3N ARRIBA other 6 0 medium [],duplication AC104819.3 NA AC104819.3 AC079795.1 NA NA NA NA NA +6:146788610 6:146782020 ADGB--ADGB BS_Z85M2R3N ARRIBA in-frame 47 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.22Mb]],duplication/non-canonical_splicing ADGB NA ADGB NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_Z85M2R3N ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +6:44376473 6:44352726 AL353588.1--AL353588.1 BS_Z85M2R3N ARRIBA other 41 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing AL353588.1 NA AL353588.1 NA NA NA NA NA NA +10:132846057 10:132851305 CFAP46--CFAP46 BS_Z85M2R3N ARRIBA in-frame 14 1 low [SELFIE,INTRACHROMOSOMAL[chr10:0.13Mb]],duplication/non-canonical_splicing CFAP46 NA CFAP46 NA NA NA NA NA NA +1:210418325 1:210321630 HHAT--AL035414.1(17090)/HHAT(6622) BS_Z85M2R3N ARRIBA frameshift 4 3 high [],duplication HHAT NA AL035414.1 HHAT NA NA NA NA NA +6:24568781 6:24583702 KIAA0319--KIAA0319 BS_Z85M2R3N ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.10Mb]],duplication/non-canonical_splicing KIAA0319 NA KIAA0319 NA NA NA NA NA NA +5:137658131 5:137795455 KLHL3--AC106791.2(33519)/NPY6R(5738) BS_Z85M2R3N ARRIBA frameshift 1 0 low [],duplication KLHL3 NA AC106791.2 NPY6R NA NA NA NA NA +3:154004323 3:154030376 LINC02006(24137)/U8(3044)--ARHGEF26-AS1 BS_Z85M2R3N ARRIBA other 1 1 low [],duplication LINC02006 U8 ARHGEF26-AS1 NA NA NA NA NA NA +8:8890061 8:8381834 MFHAS1--PRAG1 BS_Z85M2R3N ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr8:0.40Mb]],deletion MFHAS1 NA PRAG1 NA Oncogene Kinase NA NA NA +15:76009200 15:76052983 NRG4--NRG4 BS_Z85M2R3N ARRIBA frameshift 16 2 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +1:99429460 1:99492969 PLPPR4(119870)/AL365220.1(34918)--LINC01708 BS_Z85M2R3N ARRIBA other 3 0 medium [],duplication PLPPR4 AL365220.1 LINC01708 NA NA NA NA NA NA +12:80445717 12:80424438 PTPRQ--PTPRQ BS_Z85M2R3N ARRIBA frameshift 2 1 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRQ NA PTPRQ NA NA NA NA NA NA +12:106654351 12:106608797 RFX4--RFX4 BS_Z85M2R3N ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.18Mb]],duplication/non-canonical_splicing RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA +1:118039292 1:118087008 SPAG17--SPAG17 BS_Z85M2R3N ARRIBA frameshift 19 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.23Mb]],duplication/non-canonical_splicing SPAG17 NA SPAG17 NA NA NA NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_Z85M2R3N ARRIBA other 3 0 medium [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +2:119685754 2:119604672 TMEM177--CFAP221 BS_Z85M2R3N ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr2:0.02Mb],LOCAL_REARRANGEMENT:+:[16916]],duplication TMEM177 NA CFAP221 NA NA NA NA NA NA +8:93833527 8:93786223 TMEM67(14293)/AC084346.1(927)--TMEM67 BS_Z85M2R3N ARRIBA other 1 3 medium [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +3:106685809 3:106838212 Y_RNA(169811)/Y_RNA(2869)--LINC00882 BS_Z85M2R3N ARRIBA other 2 1 medium [],duplication Y_RNA Y_RNA LINC00882 NA NA NA NA NA NA +21:34073745 21:16181591 AP000317.2--MIR99AHG BS_Z8F3GM85 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr21:17.45Mb]],duplication AP000317.2 NA MIR99AHG NA NA NA NA NA NA +21:34073745 21:16231056 AP000317.2--MIR99AHG BS_Z8F3GM85 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr21:17.45Mb]],duplication AP000317.2 NA MIR99AHG NA NA NA NA NA NA +2:9297445 2:2786039 ASAP2--AC018685.1(55082)/AC011995.2(48225) BS_Z8F3GM85 ARRIBA frameshift 2 0 low [],inversion ASAP2 NA AC018685.1 AC011995.2 NA NA NA NA NA +10:15370956 10:13675044 FAM171A1--FRMD4A BS_Z8F3GM85 ARRIBA in-frame 13 0 high [INTRACHROMOSOMAL[chr10:0.75Mb]],deletion FAM171A1 NA FRMD4A NA NA NA NA NA NA +10:15370956 10:13675044 FAM171A1--FRMD4A BS_Z8F3GM85 STARFUSION in-frame 13 0 NA [INTRACHROMOSOMAL[chr10:0.75Mb]] FAM171A1 NA FRMD4A NA NA NA NA NA NA +21:34073745 21:16181591 MRPS6--MIR99AHG BS_Z8F3GM85 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr21:17.45Mb]],duplication MRPS6 NA MIR99AHG NA NA NA NA NA NA +21:34073745 21:16231056 MRPS6--MIR99AHG BS_Z8F3GM85 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr21:17.45Mb]],duplication MRPS6 NA MIR99AHG NA NA NA NA NA NA +3:196502873 10:50233 RNF168--TUBB8 BS_Z8F3GM85 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr3--chr10]],translocation RNF168 NA TUBB8 NA NA NA NA NA NA +21:34073745 21:16181591 SLC5A3--MIR99AHG BS_Z8F3GM85 ARRIBA frameshift 5 0 high [INTRACHROMOSOMAL[chr21:17.45Mb]],duplication SLC5A3 NA MIR99AHG NA NA NA NA NA NA +21:34073745 21:16231056 SLC5A3--MIR99AHG BS_Z8F3GM85 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr21:17.45Mb]],duplication SLC5A3 NA MIR99AHG NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_Z8YZ6QGS ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_Z8YZ6QGS ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_Z8YZ6QGS ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_Z8YZ6QGS ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +13:106567573 13:106714828 ARGLU1--LINC00443(42665)/AL162574.2(58795) BS_Z8YZ6QGS ARRIBA frameshift 6 0 medium [],duplication ARGLU1 NA LINC00443 AL162574.2 NA NA NA NA NA +13:112690455 20:10556231 ATP11A--SLX4IP BS_Z8YZ6QGS ARRIBA in-frame 13 0 high [INTERCHROMOSOMAL[chr13--chr20]],translocation ATP11A NA SLX4IP NA NA NA NA NA NA +13:112690455 20:10458176 ATP11A--SLX4IP BS_Z8YZ6QGS ARRIBA frameshift 9 1 high [INTERCHROMOSOMAL[chr13--chr20]],translocation ATP11A NA SLX4IP NA NA NA NA NA NA +13:112690455 20:10598675 ATP11A--SLX4IP BS_Z8YZ6QGS ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr13--chr20]],translocation ATP11A NA SLX4IP NA NA NA NA NA NA +13:112690455 20:10560700 ATP11A--SLX4IP BS_Z8YZ6QGS ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr13--chr20]],translocation ATP11A NA SLX4IP NA NA NA NA NA NA +13:112690455 20:10556231 ATP11A--SLX4IP BS_Z8YZ6QGS STARFUSION in-frame 13 1 NA [INTERCHROMOSOMAL[chr13--chr20]] ATP11A NA SLX4IP NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_Z8YZ6QGS ARRIBA other 8 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_Z8YZ6QGS ARRIBA other 7 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +20:10560820 13:112759993 SLX4IP--ATP11A BS_Z8YZ6QGS ARRIBA frameshift 2 2 high [INTERCHROMOSOMAL[chr20--chr13]],translocation SLX4IP NA ATP11A NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_Z8YZ6QGS ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +9:112817815 9:112617871 SNX30--KIAA1958 BS_Z9ZS6ZS2 ARRIBA frameshift 5 0 high [YOSHIHARA_TCGA,GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr9:0.08Mb],LOCAL_REARRANGEMENT:+:[81441]],duplication SNX30 NA KIAA1958 NA NA NA NA NA TCGAFusion +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_ZA9XT151 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +9:119208719 9:119214155 BRINP1--BRINP1 BS_ZA9XT151 ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +20:46240963 20:46241257 CDH22--CDH22 BS_ZA9XT151 ARRIBA frameshift 18 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.13Mb]],duplication/non-canonical_splicing CDH22 NA CDH22 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_ZA9XT151 ARRIBA other 19 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +4:161455004 4:161510424 FSTL5--FSTL5 BS_ZA9XT151 ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr4:0.78Mb]],duplication/non-canonical_splicing FSTL5 NA FSTL5 NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_ZA9XT151 ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_ZA9XT151 ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34056544 6:34062028 GRM4--GRM4 BS_ZA9XT151 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_ZA9XT151 ARRIBA frameshift 7 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +8:124555742 8:124558832 MTSS1--MTSS1 BS_ZA9XT151 ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.18Mb]],duplication/non-canonical_splicing MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_ZA9XT151 ARRIBA frameshift 6 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +11:64685646 11:64685947 NRXN2--NRXN2 BS_ZA9XT151 ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.12Mb]],duplication/non-canonical_splicing NRXN2 NA NRXN2 NA Oncogene Oncogene NA NA NA +11:132436086 11:132437359 OPCML--OPCML BS_ZA9XT151 ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr11:1.12Mb]],duplication/non-canonical_splicing OPCML NA OPCML NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA +2:209881094 2:209877954 UNC80--UNC80 BS_ZA9XT151 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ZF34SJGN ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ZF34SJGN ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_ZF34SJGN ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +14:20343086 14:49862654 AL355075.4--RN7SL2 BS_ZF34SJGN STARFUSION other 4 14 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] AL355075.4 NA RN7SL2 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_ZF34SJGN ARRIBA other 6 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +14:20343090 14:49862650 RPPH1--RN7SL2 BS_ZF34SJGN STARFUSION other 4 14 NA [INTRACHROMOSOMAL[chr14:29.52Mb]] RPPH1 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ZF34SJGN ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ZH1FBX50 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ZH1FBX50 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_ZH1FBX50 ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_ZH1FBX50 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +22:32273507 22:32268288 AL008723.1--SLC5A4-AS1 BS_ZH1FBX50 STARFUSION other 15 2 NA [INTRACHROMOSOMAL[chr22:0.00Mb],LOCAL_REARRANGEMENT:+:[3754]] AL008723.1 NA SLC5A4-AS1 NA NA NA NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_ZH1FBX50 ARRIBA frameshift 26 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211103496 1:211107377 AL590132.1--KCNH1 BS_ZH1FBX50 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_ZH1FBX50 ARRIBA frameshift 20 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_ZH1FBX50 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_ZH1FBX50 ARRIBA in-frame 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_ZH1FBX50 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211107377 AL590132.1--KCNH1 BS_ZH1FBX50 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_ZH1FBX50 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_ZH1FBX50 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_ZH1FBX50 ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +X:20839996 12:130517915 AL807742.1--RIMBP2 BS_ZH1FBX50 ARRIBA other 4 0 low [INTERCHROMOSOMAL[chrX--chr12]],translocation AL807742.1 NA RIMBP2 NA NA NA NA NA NA +18:79307234 18:79193183 ATP9B--ATP9B BS_ZH1FBX50 ARRIBA in-frame 14 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr18:0.31Mb]],duplication/non-canonical_splicing ATP9B NA ATP9B NA NA NA NA NA NA +1:186425346 1:186390711 C1orf27(3968)/AL596220.1(9815)--C1orf27 BS_ZH1FBX50 ARRIBA other 1 0 low [],duplication C1orf27 AL596220.1 C1orf27 NA NA NA NA NA NA +9:100585927 9:100498765 CAVIN4--TMEFF1 BS_ZH1FBX50 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +9:100578551 9:100498765 CAVIN4--TMEFF1 BS_ZH1FBX50 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +16:76467523 16:76448012 CNTNAP4--CNTNAP4 BS_ZH1FBX50 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr16:0.28Mb]],duplication/non-canonical_splicing CNTNAP4 NA CNTNAP4 NA NA NA NA NA NA +6:83926331 6:83864175 CYB5R4--CYB5R4 BS_ZH1FBX50 ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_ZH1FBX50 ARRIBA frameshift 15 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_ZH1FBX50 ARRIBA in-frame 91 14 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_ZH1FBX50 ARRIBA frameshift 12 1 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:114469299 6:114371592 HDAC2-AS2--HDAC2-AS2 BS_ZH1FBX50 ARRIBA other 4 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.50Mb]],duplication/non-canonical_splicing HDAC2-AS2 NA HDAC2-AS2 NA NA NA NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_ZH1FBX50 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_ZH1FBX50 ARRIBA frameshift 26 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_ZH1FBX50 ARRIBA frameshift 20 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_ZH1FBX50 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_ZH1FBX50 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_ZH1FBX50 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211103496 1:211107377 KCNH1--AL590132.1 BS_ZH1FBX50 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_ZH1FBX50 ARRIBA frameshift 6 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_ZH1FBX50 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_ZH1FBX50 ARRIBA in-frame 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_ZH1FBX50 ARRIBA in-frame 4 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_ZH1FBX50 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211107377 KCNH1--AL590132.1 BS_ZH1FBX50 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_ZH1FBX50 ARRIBA frameshift 26 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_ZH1FBX50 ARRIBA frameshift 12 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_ZH1FBX50 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +12:40340454 12:40313972 LRRK2--LRRK2 BS_ZH1FBX50 ARRIBA frameshift 2 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.17Mb]],duplication/non-canonical_splicing LRRK2 NA LRRK2 NA Kinase, Kinase Kinase, Kinase NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_ZH1FBX50 ARRIBA frameshift 16 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +6:118813102 6:118856545 MCM9--MCM9 BS_ZH1FBX50 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.12Mb]],duplication MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +8:74612940 8:74500513 MIR2052HG--GDAP1(11641)/MIR5681A(48030) BS_ZH1FBX50 ARRIBA other 3 0 high [],duplication MIR2052HG NA GDAP1 MIR5681A NA NA NA NA NA +6:61606290 6:61661364 MTRNR2L9(31888)/AL049544.1(23943)--AL049544.1 BS_ZH1FBX50 ARRIBA other 5 0 medium [],duplication MTRNR2L9 AL049544.1 AL049544.1 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_ZH1FBX50 ARRIBA other 16 1 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_ZH1FBX50 ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_ZH1FBX50 ARRIBA in-frame 20 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ZH1FBX50 ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_ZHHAM3AN ARRIBA in-frame 5 1 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +3:152447773 7:140783157 MBNL1--BRAF BS_ZHHAM3AN ARRIBA in-frame 19 0 high [INTERCHROMOSOMAL[chr3--chr7]],translocation MBNL1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +3:152447773 7:140783157 MBNL1--BRAF BS_ZHHAM3AN STARFUSION in-frame 20 1 NA [INTERCHROMOSOMAL[chr3--chr7]] MBNL1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:38335472 3:152459271 TRGV7--MBNL1 BS_ZHHAM3AN ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr7--chr3]],translocation TRGV7 NA MBNL1 NA NA NA NA NA NA +6:52995909 14:20343396 7SK--RPPH1 BS_ZJZXDPTP STARFUSION other 5 11 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RPPH1 NA NA NA NA NA NA +17:1125183 12:98832136 ABR--ANKS1B BS_ZJZXDPTP ARRIBA in-frame 7 0 high [INTERCHROMOSOMAL[chr17--chr12]],translocation ABR NA ANKS1B NA Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ZJZXDPTP ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ZJZXDPTP ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:21261835 15:20671268 AC068446.3(1688)/AC068446.1(31818)--NBEAP1 BS_ZJZXDPTP ARRIBA other 1 2 high [],deletion AC068446.3 AC068446.1 NBEAP1 NA NA Oncogene NA NA NA +11:77994590 11:78017270 INTS4--KCTD14 BS_ZJZXDPTP ARRIBA frameshift 14 0 medium [FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr11:0.02Mb],LOCAL_REARRANGEMENT:-:[21037]],duplication INTS4 NA KCTD14 NA NA NA NA NA TCGAFusion +11:77994590 11:78017270 INTS4--NDUFC2-KCTD14 BS_ZJZXDPTP ARRIBA frameshift 14 0 medium [INTRACHROMOSOMAL[chr11:0.02Mb],LOCAL_REARRANGEMENT:-:[22293]],duplication INTS4 NA NDUFC2-KCTD14 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ZJZXDPTP ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:52995907 14:49862666 7SK--RN7SL2 BS_ZN8136D9 STARFUSION other 7 6 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +3:167234890 3:167282495 AC092965.1(168570)/ZBBX(5397)--ZBBX BS_ZN8136D9 ARRIBA other 4 0 high [],duplication AC092965.1 ZBBX ZBBX NA NA NA NA NA NA +15:93593359 15:93553605 AC110023.1--AC091078.1 BS_ZN8136D9 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.02Mb],LOCAL_REARRANGEMENT:+:[20384]],duplication AC110023.1 NA AC091078.1 NA NA NA NA NA NA +14:60019260 14:59997656 LRRC9--LRRC9 BS_ZN8136D9 ARRIBA frameshift 7 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.14Mb]],duplication/non-canonical_splicing LRRC9 NA LRRC9 NA NA NA NA NA NA +12:96909895 12:96786797 NEDD1--CFAP54 BS_ZN8136D9 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr12:0.03Mb],LOCAL_REARRANGEMENT:+:[31668]],duplication NEDD1 NA CFAP54 NA NA NA NA NA NA +9:127661207 6:7248975 STXBP1--RREB1 BS_ZN8136D9 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr9--chr6]],translocation STXBP1 NA RREB1 NA NA Oncogene, TranscriptionFactor NA NA NA +7:72616672 7:72713798 TYW1B--TYW1B BS_ZN8136D9 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.27Mb]],duplication/non-canonical_splicing TYW1B NA TYW1B NA NA NA NA NA NA +1:68232194 1:67426285 WLS--SERBP1 BS_ZN8136D9 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.67Mb]],deletion WLS NA SERBP1 NA NA NA NA NA NA +6:52995908 14:49862665 7SK--RN7SL2 BS_ZR96A4FH STARFUSION other 8 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995906 14:49862654 7SK--RN7SL2 BS_ZR96A4FH STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +6:52995858 14:49862665 7SK--RN7SL2 BS_ZR96A4FH STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ZR96A4FH ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ZR96A4FH ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_ZR96A4FH ARRIBA other 7 1 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +12:45476675 12:45482071 AC063924.1(31237)/AC079950.1(5196)--AC079950.1 BS_ZR96A4FH ARRIBA other 5 0 medium [],duplication AC063924.1 AC079950.1 AC079950.1 NA NA NA NA NA NA +11:49576906 11:49576046 AC136759.1--AC136759.1 BS_ZR96A4FH ARRIBA other 7 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.25Mb]],duplication/non-canonical_splicing AC136759.1 NA AC136759.1 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_ZR96A4FH ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_ZR96A4FH ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +14:49586870 14:20343228 AL139099.5--AL355075.4 BS_ZR96A4FH STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA AL355075.4 NA NA NA NA NA NA +14:49586871 14:20343236 AL139099.5--RPPH1 BS_ZR96A4FH STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] AL139099.5 NA RPPH1 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_ZR96A4FH ARRIBA other 5 0 medium [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_ZR96A4FH ARRIBA frameshift 10 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_ZR96A4FH ARRIBA frameshift 9 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211090690 AL590132.1--KCNH1 BS_ZR96A4FH ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_ZR96A4FH ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_ZR96A4FH ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211107377 AL590132.1--KCNH1 BS_ZR96A4FH ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_ZR96A4FH ARRIBA frameshift 24 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_ZR96A4FH ARRIBA frameshift 31 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_ZR96A4FH ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +2:231331897 2:231282059 ARMC9--ARMC9 BS_ZR96A4FH ARRIBA in-frame 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing ARMC9 NA ARMC9 NA NA NA NA NA NA +13:25774959 13:25769046 ATP8A2--ATP8A2 BS_ZR96A4FH ARRIBA frameshift 31 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.65Mb]],duplication/non-canonical_splicing ATP8A2 NA ATP8A2 NA NA NA NA NA NA +9:119238655 9:119249150 BRINP1--BRINP1 BS_ZR96A4FH ARRIBA frameshift 7 3 low [SELFIE,INTRACHROMOSOMAL[chr9:0.22Mb]],duplication/non-canonical_splicing BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA +4:6007996 4:6011968 C4orf50--C4orf50 BS_ZR96A4FH ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.12Mb]],duplication/non-canonical_splicing C4orf50 NA C4orf50 NA NA NA NA NA NA +8:68787536 8:68708994 C8orf34--C8orf34 BS_ZR96A4FH ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.49Mb]],duplication/non-canonical_splicing C8orf34 NA C8orf34 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_ZR96A4FH ARRIBA frameshift 18 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:15729798 9:15695235 CCDC171--CCDC171 BS_ZR96A4FH ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.51Mb]],duplication/non-canonical_splicing CCDC171 NA CCDC171 NA NA NA NA NA NA +10:12998338 10:13074100 CCDC3--CCDC3 BS_ZR96A4FH ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.20Mb]],duplication/non-canonical_splicing CCDC3 NA CCDC3 NA NA NA NA NA NA +16:56076148 16:56162106 CES5A(120117)/AC007495.1(16839)--AC007495.1 BS_ZR96A4FH ARRIBA other 3 0 medium [],duplication CES5A AC007495.1 AC007495.1 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_ZR96A4FH ARRIBA in-frame 14 2 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +12:111298589 12:111293446 CUX2--CUX2 BS_ZR96A4FH ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr12:0.32Mb]],duplication/non-canonical_splicing CUX2 NA CUX2 NA TranscriptionFactor TranscriptionFactor NA NA NA +6:83926331 6:83864175 CYB5R4--CYB5R4 BS_ZR96A4FH ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.11Mb]],duplication/non-canonical_splicing CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA +14:53058477 14:53091932 DDHD1--DDHD1 BS_ZR96A4FH ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing DDHD1 NA DDHD1 NA NA NA NA NA NA +7:137463489 7:137609609 DGKI--DGKI BS_ZR96A4FH ARRIBA frameshift 23 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.47Mb]],duplication/non-canonical_splicing DGKI NA DGKI NA NA NA NA NA NA +2:26928323 2:26924887 DPYSL5--DPYSL5 BS_ZR96A4FH ARRIBA in-frame 9 2 low [SELFIE,INTRACHROMOSOMAL[chr2:0.10Mb]],duplication/non-canonical_splicing DPYSL5 NA DPYSL5 NA NA NA NA NA NA +14:89870643 14:89932627 EFCAB11--EFCAB11 BS_ZR96A4FH ARRIBA frameshift 3 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.16Mb]],duplication EFCAB11 NA EFCAB11 NA NA NA NA NA NA +9:23762006 9:23765099 ELAVL2--ELAVL2 BS_ZR96A4FH ARRIBA frameshift 22 0 low [SELFIE,INTRACHROMOSOMAL[chr9:0.14Mb]],duplication/non-canonical_splicing ELAVL2 NA ELAVL2 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_ZR96A4FH ARRIBA in-frame 129 12 high [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:74492266 1:74439490 FPGT-TNNI3K--FPGT-TNNI3K BS_ZR96A4FH ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA +X:152189730 X:152208144 GABRA3--GABRA3 BS_ZR96A4FH ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.29Mb]],duplication/non-canonical_splicing GABRA3 NA GABRA3 NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_ZR96A4FH ARRIBA frameshift 6 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +12:13753317 12:13753915 GRIN2B--GRIN2B BS_ZR96A4FH ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr12:0.54Mb]],duplication/non-canonical_splicing GRIN2B NA GRIN2B NA NA NA NA NA NA +9:101613376 9:101687200 GRIN3A--GRIN3A BS_ZR96A4FH ARRIBA in-frame 8 1 low [SELFIE,INTRACHROMOSOMAL[chr9:0.17Mb]],duplication/non-canonical_splicing GRIN3A NA GRIN3A NA NA NA NA NA NA +7:126532952 7:126533887 GRM8--GRM8 BS_ZR96A4FH ARRIBA in-frame 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr7:0.81Mb]],duplication/non-canonical_splicing GRM8 NA GRM8 NA NA NA NA NA NA +6:114168351 6:114228778 HS3ST5--HS3ST5 BS_ZR96A4FH ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.29Mb]],duplication/non-canonical_splicing HS3ST5 NA HS3ST5 NA NA NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_ZR96A4FH ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_ZR96A4FH ARRIBA frameshift 10 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_ZR96A4FH ARRIBA frameshift 9 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211090690 KCNH1--AL590132.1 BS_ZR96A4FH ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_ZR96A4FH ARRIBA frameshift 31 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_ZR96A4FH ARRIBA frameshift 24 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_ZR96A4FH ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211082898 KCNH1--AL590132.1 BS_ZR96A4FH ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211090690 KCNH1--AL590132.1 BS_ZR96A4FH ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_ZR96A4FH ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210775348 1:211019256 KCNH1--AL590132.1 BS_ZR96A4FH ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_ZR96A4FH ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211107377 KCNH1--AL590132.1 BS_ZR96A4FH ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_ZR96A4FH ARRIBA frameshift 31 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_ZR96A4FH ARRIBA frameshift 22 5 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_ZR96A4FH ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +14:58512627 14:58482513 KIAA0586--KIAA0586 BS_ZR96A4FH ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.12Mb]],duplication/non-canonical_splicing KIAA0586 NA KIAA0586 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_ZR96A4FH ARRIBA frameshift 16 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +13:46553702 6:110875119 LRCH1--AMD1 BS_ZR96A4FH ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr13--chr6]],translocation LRCH1 NA AMD1 NA NA NA NA NA NA +6:6366355 6:6438732 LY86-AS1--LY86-AS1 BS_ZR96A4FH ARRIBA other 10 2 low [SELFIE,INTRACHROMOSOMAL[chr6:0.28Mb]],duplication/non-canonical_splicing LY86-AS1 NA LY86-AS1 NA NA NA NA NA NA +17:45996664 17:45978375 MAPT--MAPT BS_ZR96A4FH ARRIBA frameshift 18 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr17:0.13Mb]],duplication/non-canonical_splicing MAPT NA MAPT NA NA NA NA NA NA +14:46920012 14:47035304 MDGA2--MDGA2 BS_ZR96A4FH ARRIBA frameshift 14 2 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +8:88056128 8:88167973 MMP16--MMP16 BS_ZR96A4FH ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.30Mb]],duplication/non-canonical_splicing MMP16 NA MMP16 NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_ZR96A4FH ARRIBA other 5 0 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +6:61606290 6:61661364 MTRNR2L9(31888)/AL049544.1(23943)--AL049544.1 BS_ZR96A4FH ARRIBA other 6 0 medium [],duplication MTRNR2L9 AL049544.1 AL049544.1 NA NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_ZR96A4FH ARRIBA other 26 1 high [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_ZR96A4FH ARRIBA frameshift 11 2 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +2:1839149 2:1892287 MYT1L--MYT1L BS_ZR96A4FH ARRIBA frameshift 9 3 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +11:20960560 11:20937786 NELL1--NELL1 BS_ZR96A4FH ARRIBA in-frame 30 0 low [SELFIE,INTRACHROMOSOMAL[chr11:0.91Mb]],duplication/non-canonical_splicing NELL1 NA NELL1 NA NA NA NA NA NA +12:44665484 12:44714741 NELL2--NELL2 BS_ZR96A4FH ARRIBA in-frame 20 4 low [SELFIE,INTRACHROMOSOMAL[chr12:0.41Mb]],duplication/non-canonical_splicing NELL2 NA NELL2 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_ZR96A4FH ARRIBA other 7 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +15:27844959 15:27926254 OCA2--OCA2 BS_ZR96A4FH ARRIBA frameshift 4 1 low [SELFIE,INTRACHROMOSOMAL[chr15:0.34Mb]],duplication/non-canonical_splicing OCA2 NA OCA2 NA NA NA NA NA NA +1:101825026 1:101837025 OLFM3--OLFM3 BS_ZR96A4FH ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.19Mb]],duplication/non-canonical_splicing OLFM3 NA OLFM3 NA NA NA NA NA NA +7:77951712 7:77920279 PHTF2--PHTF2 BS_ZR96A4FH ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_ZR96A4FH ARRIBA in-frame 52 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +7:39340015 7:39318215 POU6F2--POU6F2 BS_ZR96A4FH ARRIBA frameshift 5 0 medium [SELFIE,INTRACHROMOSOMAL[chr7:0.52Mb]],duplication POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +12:3583208 12:3568706 PRMT8--PRMT8 BS_ZR96A4FH ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.21Mb]],duplication/non-canonical_splicing PRMT8 NA PRMT8 NA NA NA NA NA NA +3:61755150 3:61748878 PTPRG--PTPRG BS_ZR96A4FH ARRIBA in-frame 11 0 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr3:0.74Mb]],duplication PTPRG NA PTPRG NA Oncogene Oncogene NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_ZR96A4FH ARRIBA frameshift 8 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +14:49586870 14:20343228 RN7SL1--AL355075.4 BS_ZR96A4FH STARFUSION other 3 11 NA [INTRACHROMOSOMAL[chr14:29.24Mb]] RN7SL1 NA AL355075.4 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ZR96A4FH ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:87777955 7:87739791 RUNDC3B--RUNDC3B BS_ZR96A4FH ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing RUNDC3B NA RUNDC3B NA NA NA NA NA NA +4:158617205 4:158607972 RXFP1--RXFP1 BS_ZR96A4FH ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.34Mb]],duplication/non-canonical_splicing RXFP1 NA RXFP1 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_ZR96A4FH ARRIBA other 9 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +2:161901011 2:161872293 SLC4A10--SLC4A10 BS_ZR96A4FH ARRIBA frameshift 16 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.56Mb]],duplication/non-canonical_splicing SLC4A10 NA SLC4A10 NA NA NA NA NA NA +8:50502880 8:50438543 SNTG1--SNTG1 BS_ZR96A4FH ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.88Mb]],duplication/non-canonical_splicing SNTG1 NA SNTG1 NA NA NA NA NA NA +3:8703026 3:8768591 SSUH2--OXTR BS_ZR96A4FH ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr3:0.01Mb],LOCAL_REARRANGEMENT:-:[5368]],duplication SSUH2 NA OXTR NA NA NA NA NA NA +3:8742459 3:8768591 SSUH2--OXTR BS_ZR96A4FH ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:0.01Mb],LOCAL_REARRANGEMENT:-:[5368]],duplication SSUH2 NA OXTR NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_ZR96A4FH ARRIBA in-frame 10 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +4:16355785 4:16288884 TAPT1-AS1(35645)/ZEB2P1(4901)--TAPT1-AS1 BS_ZR96A4FH ARRIBA other 3 2 high [],duplication TAPT1-AS1 ZEB2P1 TAPT1-AS1 NA NA NA NA NA NA +10:131260259 10:131309299 TCERG1L--TCERG1L BS_ZR96A4FH ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr10:0.22Mb]],duplication/non-canonical_splicing TCERG1L NA TCERG1L NA NA NA NA NA NA +17:34641158 17:34626127 TMEM132E(1840)/AC005552.1(84351)--TMEM132E BS_ZR96A4FH ARRIBA other 5 0 medium [],duplication TMEM132E AC005552.1 TMEM132E NA NA NA NA NA NA +5:110640891 5:110642371 TMEM232--TMEM232 BS_ZR96A4FH ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.45Mb]],duplication/non-canonical_splicing TMEM232 NA TMEM232 NA NA NA NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_ZR96A4FH ARRIBA in-frame 8 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +14:72594327 14:72619984 AC004828.1--DPF3 BS_ZRM0W01M ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[24171]],duplication AC004828.1 NA DPF3 NA NA TranscriptionFactor NA NA NA +14:72617897 14:72771893 AC004828.1(22772)/DPF3(1399)--DPF3 BS_ZRM0W01M ARRIBA other 1 2 high [],duplication AC004828.1 DPF3 DPF3 NA NA TranscriptionFactor TranscriptionFactor NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ZRM0W01M ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ZRM0W01M ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:155503021 7:155509097 AC009403.2--AC009403.2 BS_ZRM0W01M ARRIBA other 6 1 low [SELFIE,INTRACHROMOSOMAL[chr7:0.17Mb]],duplication/non-canonical_splicing AC009403.2 NA AC009403.2 NA NA NA NA NA NA +7:150047609 7:149909705 AC092666.2--AC092681.1 BS_ZRM0W01M STARFUSION other 11 0 NA [INTRACHROMOSOMAL[chr7:0.14Mb]] AC092666.2 NA AC092681.1 NA NA NA NA NA NA +9:38471933 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_ZRM0W01M ARRIBA other 4 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +3:37386370 3:37385141 C3orf35--GOLGA4(18390)/C3orf35(1128) BS_ZRM0W01M ARRIBA other 1 0 low [],duplication C3orf35 NA GOLGA4 C3orf35 NA NA NA NA NA +19:13307782 19:13308528 CACNA1A--CACNA1A BS_ZRM0W01M ARRIBA in-frame 45 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.43Mb]],duplication/non-canonical_splicing CACNA1A NA CACNA1A NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_ZRM0W01M ARRIBA frameshift 12 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +18:65862917 18:65809704 CDH7--CDH7 BS_ZRM0W01M ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.14Mb]],duplication/non-canonical_splicing CDH7 NA CDH7 NA NA NA NA NA NA +2:124798320 2:124772799 CNTNAP5--CNTNAP5 BS_ZRM0W01M ARRIBA in-frame 7 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.89Mb]],duplication/non-canonical_splicing CNTNAP5 NA CNTNAP5 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_ZRM0W01M ARRIBA other 62 4 high [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +21:9373947 21:8863998 CR381653.2--CR381670.1 BS_ZRM0W01M ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr21:0.49Mb]],inversion CR381653.2 NA CR381670.1 NA NA NA NA NA NA +8:112921627 8:112976148 CSMD3--CSMD3 BS_ZRM0W01M ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr8:1.21Mb]],duplication/non-canonical_splicing CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +X:16667514 X:16702941 CTPS2--CTPS2 BS_ZRM0W01M ARRIBA frameshift 4 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chrX:0.12Mb]],duplication/non-canonical_splicing CTPS2 NA CTPS2 NA NA NA NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_ZRM0W01M ARRIBA frameshift 8 4 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +14:75004735 14:75049718 EIF2B2--MLH3 BS_ZRM0W01M ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr14:0.00Mb],LOCAL_INVERSION:+:-:[1398]],duplication/3'-3' EIF2B2 NA MLH3 NA NA TumorSuppressorGene NA NA NA +X:47649921 X:47652144 ELK1--UXT BS_ZRM0W01M ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:-:[1194]],duplication ELK1 NA UXT NA Oncogene, TranscriptionFactor NA NA NA NA +X:47641232 X:47652144 ELK1--UXT BS_ZRM0W01M ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:-:[1194]],duplication ELK1 NA UXT NA Oncogene, TranscriptionFactor NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_ZRM0W01M ARRIBA in-frame 17 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +1:74492266 1:74439490 FPGT-TNNI3K--FPGT-TNNI3K BS_ZRM0W01M ARRIBA frameshift 2 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.35Mb]],duplication/non-canonical_splicing FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA +14:65751068 14:65721775 FUT8(6947)/AL391261.1(128524)--FUT8 BS_ZRM0W01M ARRIBA other 6 0 medium [],duplication FUT8 AL391261.1 FUT8 NA Oncogene Oncogene NA NA NA +4:46303460 4:46332682 GABRA2--GABRA2 BS_ZRM0W01M ARRIBA in-frame 5 0 low [SELFIE,INTRACHROMOSOMAL[chr4:0.23Mb]],duplication/non-canonical_splicing GABRA2 NA GABRA2 NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_ZRM0W01M ARRIBA frameshift 3 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +14:59456438 14:59551436 GPR135--CCDC175 BS_ZRM0W01M ARRIBA other 3 1 high [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59456438 14:59565275 GPR135--CCDC175 BS_ZRM0W01M ARRIBA other 1 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59455684 14:59551436 GPR135--CCDC175 BS_ZRM0W01M ARRIBA other 1 1 medium [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59565275 GPR135--CCDC175 BS_ZRM0W01M ARRIBA other 2 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +14:59458857 14:59551436 GPR135--CCDC175 BS_ZRM0W01M ARRIBA other 1 0 low [GTEx,INTRACHROMOSOMAL[chr14:0.04Mb],LOCAL_REARRANGEMENT:-:[39197]],duplication GPR135 NA CCDC175 NA NA NA NA NA NA +4:93238490 4:93084995 GRID2--GRID2 BS_ZRM0W01M ARRIBA frameshift 24 0 low [SELFIE,INTRACHROMOSOMAL[chr4:1.51Mb]],duplication/non-canonical_splicing GRID2 NA GRID2 NA NA NA NA NA NA +6:146399699 6:146398769 GRM1--GRM1 BS_ZRM0W01M ARRIBA frameshift 53 3 low [SELFIE,INTRACHROMOSOMAL[chr6:0.41Mb]],duplication/non-canonical_splicing GRM1 NA GRM1 NA NA NA NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_ZRM0W01M ARRIBA frameshift 56 5 high [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_ZRM0W01M ARRIBA frameshift 3 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +8:139611337 8:139612674 KCNK9--KCNK9 BS_ZRM0W01M ARRIBA other 12 3 low [SELFIE,INTRACHROMOSOMAL[chr8:0.10Mb]],duplication/non-canonical_splicing KCNK9 NA KCNK9 NA NA NA NA NA NA +13:69940040 13:69975802 KLHL1--KLHL1 BS_ZRM0W01M ARRIBA frameshift 3 1 low [SELFIE,INTRACHROMOSOMAL[chr13:0.41Mb]],duplication/non-canonical_splicing KLHL1 NA KLHL1 NA NA NA NA NA NA +14:59475869 14:59551436 L3HYPDH--CCDC175 BS_ZRM0W01M ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59565275 L3HYPDH--CCDC175 BS_ZRM0W01M ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59568380 L3HYPDH--CCDC175 BS_ZRM0W01M ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59540746 L3HYPDH--CCDC175 BS_ZRM0W01M ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59479182 14:59521676 L3HYPDH--CCDC175 BS_ZRM0W01M ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +14:59475869 14:59511803 L3HYPDH--CCDC175 BS_ZRM0W01M ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr14:0.02Mb],LOCAL_REARRANGEMENT:-:[20109]],duplication L3HYPDH NA CCDC175 NA NA NA NA NA NA +18:42454989 18:42453932 LINC00907--LINC00907 BS_ZRM0W01M ARRIBA other 5 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.53Mb]],duplication/non-canonical_splicing LINC00907 NA LINC00907 NA NA NA NA NA NA +8:10480192 8:10436262 LINCR-0001--AC104964.2 BS_ZRM0W01M ARRIBA other 3 2 high [INTRACHROMOSOMAL[chr8:0.04Mb],LOCAL_REARRANGEMENT:+:[36253]],duplication LINCR-0001 NA AC104964.2 NA NA NA NA NA NA +8:17341363 8:17373240 MTMR7--MTMR7 BS_ZRM0W01M ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.12Mb]],duplication/non-canonical_splicing MTMR7 NA MTMR7 NA NA NA NA NA NA +2:1922292 2:1923263 MYT1L--MYT1L BS_ZRM0W01M ARRIBA frameshift 15 5 low [SELFIE,INTRACHROMOSOMAL[chr2:0.54Mb]],duplication/non-canonical_splicing MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA +8:32029485 8:31844448 NRG1-IT1--NRG1 BS_ZRM0W01M ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr8:0.11Mb]],duplication NRG1-IT1 NA NRG1 NA NA CosmicCensus NA NA NA +15:75955932 15:76052983 NRG4--NRG4 BS_ZRM0W01M ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +21:45789671 21:45788298 PCBP3--PCBP3 BS_ZRM0W01M ARRIBA other 25 2 high [SELFIE,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication PCBP3 NA PCBP3 NA NA NA NA NA NA +7:77951712 7:77920279 PHTF2--PHTF2 BS_ZRM0W01M ARRIBA frameshift 4 3 low [SELFIE,INTRACHROMOSOMAL[chr7:0.16Mb]],duplication/non-canonical_splicing PHTF2 NA PHTF2 NA NA NA NA NA NA +7:30062742 7:30045085 PLEKHA8--PLEKHA8 BS_ZRM0W01M ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr7:0.10Mb]],duplication/non-canonical_splicing PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA +12:70684127 12:70701323 PTPRR--PTPRR BS_ZRM0W01M ARRIBA frameshift 9 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.28Mb]],duplication/non-canonical_splicing PTPRR NA PTPRR NA NA NA NA NA NA +13:80657039 13:80360556 PWWP2AP1--SPRY2(19605)/RNU6-61P(8870) BS_ZRM0W01M ARRIBA other 2 1 medium [],duplication PWWP2AP1 NA SPRY2 RNU6-61P NA TumorSuppressorGene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ZRM0W01M ARRIBA other 31 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:21292164 12:21306988 SLCO1A2--SLCO1A2 BS_ZRM0W01M ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.15Mb]],duplication/non-canonical_splicing SLCO1A2 NA SLCO1A2 NA NA NA NA NA NA +2:39752380 2:39735229 THUMPD2--TMEM178A(17266)/THUMPD2(831) BS_ZRM0W01M ARRIBA other 13 0 medium [],duplication THUMPD2 NA TMEM178A THUMPD2 NA NA NA NA NA +1:74492266 1:74439490 TNNI3K--TNNI3K BS_ZRM0W01M ARRIBA frameshift 2 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.31Mb]],duplication/non-canonical_splicing TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA +2:209896413 2:209877954 UNC80--UNC80 BS_ZRM0W01M ARRIBA in-frame 11 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.23Mb]],duplication/non-canonical_splicing UNC80 NA UNC80 NA NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_ZTWGFWTX ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_ZTWGFWTX ARRIBA in-frame 3 1 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +14:46920012 14:47035304 MDGA2--MDGA2 BS_ZTWGFWTX ARRIBA frameshift 10 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.83Mb]],duplication/non-canonical_splicing MDGA2 NA MDGA2 NA NA NA NA NA NA +5:155870424 5:155854549 SGCD--RNA5SP199(9021)/SGCD(15795) BS_ZTWGFWTX ARRIBA other 5 0 high [],duplication SGCD NA RNA5SP199 SGCD NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ZV1P6W9C ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ZV1P6W9C ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:117745831 7:119500109 CTTNBP2--AC079791.1(320960)/LINC02476(204447) BS_ZV1P6W9C ARRIBA frameshift 4 0 high [],duplication CTTNBP2 NA AC079791.1 LINC02476 NA NA NA NA NA +14:49862574 17:44913307 RN7SL2--GFAP BS_ZV1P6W9C STARFUSION other 3 13 NA [INTERCHROMOSOMAL[chr14--chr17]] RN7SL2 NA GFAP NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ZV1P6W9C ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:98994848 14:79467221 TRRAP--NRXN3 BS_ZV1P6W9C ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr7--chr14]],translocation TRRAP NA NRXN3 NA Kinase, CosmicCensus, Kinase NA NA NA NA +6:52995908 14:49862664 7SK--RN7SL2 BS_ZV68CES9 STARFUSION other 4 14 NA [INTERCHROMOSOMAL[chr1--chr14]] 7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ZV68CES9 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ZV68CES9 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:65508067 5:65552549 AC025176.1(21019)/CENPK(9699)--CENPK BS_ZV68CES9 ARRIBA other 2 0 low [],duplication AC025176.1 CENPK CENPK NA NA NA NA NA NA +5:10213491 5:10227647 AC034229.4(9451)/FAM173B(12839)--FAM173B BS_ZV68CES9 ARRIBA other 3 0 medium [],duplication AC034229.4 FAM173B FAM173B NA NA NA NA NA NA +15:21261835 15:20671268 AC068446.3(1688)/AC068446.1(31818)--NBEAP1 BS_ZV68CES9 ARRIBA other 3 11 high [],deletion AC068446.3 AC068446.1 NBEAP1 NA NA Oncogene NA NA NA +2:29197036 2:29121374 ALK--CLIP4 BS_ZV68CES9 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_INVERSION:-:+:[3131]],duplication/3'-3' ALK NA CLIP4 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +2:201299238 2:201364176 ALS2CR12--ALS2CR12(6778)/TRAK2(13031) BS_ZV68CES9 ARRIBA frameshift 1 0 low [],duplication ALS2CR12 NA ALS2CR12 TRAK2 NA NA NA NA NA +1:186425261 1:186390712 C1orf27(3883)/AL596220.1(9900)--C1orf27 BS_ZV68CES9 ARRIBA other 2 0 low [],duplication C1orf27 AL596220.1 C1orf27 NA NA NA NA NA NA +2:29192257 2:29121374 CLIP4(2614)/ALK(517)--CLIP4 BS_ZV68CES9 ARRIBA other 3 0 medium [],duplication CLIP4 ALK CLIP4 NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA +4:168220655 4:168326067 DDX60--DDX60(7260)/DDX60L(30668) BS_ZV68CES9 ARRIBA frameshift 1 1 low [],duplication DDX60 NA DDX60 DDX60L NA NA NA NA NA +4:168324839 4:168458008 DDX60(6032)/DDX60L(31896)--DDX60L BS_ZV68CES9 ARRIBA other 6 3 high [],duplication DDX60 DDX60L DDX60L NA NA NA NA NA NA +6:65490594 6:65495993 EYS--EYS BS_ZV68CES9 ARRIBA frameshift 50 7 low [SELFIE,[\ChimerKB\],INTRACHROMOSOMAL[chr6:1.99Mb]],duplication/non-canonical_splicing EYS NA EYS NA NA NA NA NA NA +5:162104026 5:162093828 GABRG2--GABRG2 BS_ZV68CES9 ARRIBA frameshift 14 2 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr5:0.16Mb]],duplication/non-canonical_splicing GABRG2 NA GABRG2 NA NA NA NA NA NA +X:14796160 X:14865580 GLRA2(64348)/NPM1P9(38316)--FANCB BS_ZV68CES9 ARRIBA other 3 1 high [],duplication GLRA2 NPM1P9 FANCB NA NA NA NA NA NA +12:101830559 16:55497333 GNPTAB--MMP2 BS_ZV68CES9 ARRIBA frameshift 21 1 high [INTERCHROMOSOMAL[chr12--chr16]],translocation/5'-5' GNPTAB NA MMP2 NA NA Oncogene NA NA NA +18:42454989 18:42453932 LINC00907--LINC00907 BS_ZV68CES9 ARRIBA other 33 0 low [SELFIE,INTRACHROMOSOMAL[chr18:0.53Mb]],duplication/non-canonical_splicing LINC00907 NA LINC00907 NA NA NA NA NA NA +1:219218712 1:219210532 LYPLAL1(5847)/AL360093.1(3536)--LYPLAL1 BS_ZV68CES9 ARRIBA other 1 0 low [],duplication LYPLAL1 AL360093.1 LYPLAL1 NA NA NA NA NA NA +21:16629903 21:16630796 MIR99AHG(2506)/AP000473.1(924)--AP000473.1 BS_ZV68CES9 ARRIBA other 8 0 medium [],inversion MIR99AHG AP000473.1 AP000473.1 NA NA NA NA NA NA +12:112108716 7:11379287 NAA25--AC004160.1 BS_ZV68CES9 ARRIBA frameshift 51 0 high [INTERCHROMOSOMAL[chr12--chr7]],translocation NAA25 NA AC004160.1 NA NA NA NA NA NA +12:112108716 7:11379287 NAA25--AC004160.1 BS_ZV68CES9 STARFUSION other 51 0 NA [INTERCHROMOSOMAL[chr12--chr7]] NAA25 NA AC004160.1 NA NA NA NA NA NA +13:35110978 15:20646463 NBEA--AC023310.4(3015)/NBEAP1(11175) BS_ZV68CES9 ARRIBA frameshift 30 0 medium [],translocation NBEA NA AC023310.4 NBEAP1 CosmicCensus NA NA Oncogene NA +13:19741565 13:19835689 PSPC1--ZMYM5 BS_ZV68CES9 ARRIBA frameshift 2 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19772242 13:19835689 PSPC1--ZMYM5 BS_ZV68CES9 ARRIBA frameshift 2 0 medium [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +13:19751271 13:19835689 PSPC1--ZMYM5 BS_ZV68CES9 ARRIBA frameshift 2 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr13:0.04Mb],LOCAL_REARRANGEMENT:-:[40463]],duplication PSPC1 NA ZMYM5 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ZV68CES9 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +5:35763702 5:35739919 SPEF2--SPEF2 BS_ZV68CES9 ARRIBA in-frame 2 2 low [SELFIE,INTRACHROMOSOMAL[chr5:0.20Mb]],duplication/non-canonical_splicing SPEF2 NA SPEF2 NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_ZV68CES9 ARRIBA frameshift 29 5 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_ZV68CES9 ARRIBA other 17 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +8:93831572 8:93755020 TMEM67(12338)/AC084346.1(2882)--TMEM67 BS_ZV68CES9 ARRIBA other 1 2 high [],duplication TMEM67 AC084346.1 TMEM67 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ZV9Z3SY6 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ZV9Z3SY6 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_ZV9Z3SY6 ARRIBA in-frame 5 2 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_ZV9Z3SY6 ARRIBA other 14 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_ZV9Z3SY6 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ZVWE73JZ ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ZVWE73JZ ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_ZVWE73JZ ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +5:73684884 5:71881515 ARHGEF28--AC143336.1(125214)/MAP1B(225719) BS_ZVWE73JZ ARRIBA frameshift 7 2 high [],duplication ARHGEF28 NA AC143336.1 MAP1B NA NA NA NA NA +5:73684884 5:71977956 ARHGEF28--AC143336.1(221655)/MAP1B(129278) BS_ZVWE73JZ ARRIBA frameshift 3 1 high [],duplication ARHGEF28 NA AC143336.1 MAP1B NA NA NA NA NA +11:205611 11:11920156 BET1L--USP47 BS_ZVWE73JZ ARRIBA in-frame 7 2 high [INTRACHROMOSOMAL[chr11:11.63Mb]],inversion BET1L NA USP47 NA NA NA NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_ZVWE73JZ ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +15:34488963 15:34490796 HNRNPLP2--HNRNPLP2(225)/FSCN1P1(3624) BS_ZVWE73JZ ARRIBA other 7 0 medium [],duplication HNRNPLP2 NA HNRNPLP2 FSCN1P1 NA NA NA NA NA +14:88227375 14:88263551 KCNK10--KCNK10 BS_ZVWE73JZ ARRIBA frameshift 4 0 low [SELFIE,INTRACHROMOSOMAL[chr14:0.15Mb]],duplication/non-canonical_splicing KCNK10 NA KCNK10 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_ZVWE73JZ ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ZVWE73JZ ARRIBA other 58 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +6:159692715 6:149900538 SOD2--RAET1E-AS1 BS_ZVWE73JZ ARRIBA frameshift 36 0 medium [INTRACHROMOSOMAL[chr6:9.75Mb]],deletion/5'-5' SOD2 NA RAET1E-AS1 NA TumorSuppressorGene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ZVZDDW2G ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ZVZDDW2G ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:95734415 11:95193522 AP000820.1(33792)/AP001877.1(22544)--SESN3 BS_ZVZDDW2G ARRIBA other 3 0 medium [],deletion AP000820.1 AP001877.1 SESN3 NA NA NA NA NA NA +11:57152640 11:57189151 AP001521.2(96508)/LRRC55(29107)--LRRC55 BS_ZVZDDW2G ARRIBA other 3 0 medium [],duplication AP001521.2 LRRC55 LRRC55 NA NA NA NA NA NA +22:23182239 14:52881469 BCR--FERMT2 BS_ZVZDDW2G ARRIBA in-frame 39 3 high [HGNC_GENEFAM,INTERCHROMOSOMAL[chr22--chr14]],translocation BCR NA FERMT2 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:17369909 14:68695743 CECR2--RAD51B BS_ZVZDDW2G ARRIBA frameshift 17 0 high [INTERCHROMOSOMAL[chr22--chr14]],translocation/5'-5' CECR2 NA RAD51B NA NA CosmicCensus, Oncogene NA NA NA +14:77098361 22:36566493 CIPC--CACNG2 BS_ZVZDDW2G ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr14--chr22]],translocation CIPC NA CACNG2 NA NA NA NA NA NA +14:91936947 14:93843908 FBLN5--PRIMA1(55427)/AL132642.2(51854) BS_ZVZDDW2G ARRIBA frameshift 7 1 high [],duplication FBLN5 NA PRIMA1 AL132642.2 NA NA NA NA NA +14:67143449 22:48749839 GPHN--FAM19A5 BS_ZVZDDW2G ARRIBA in-frame 11 3 high [INTERCHROMOSOMAL[chr14--chr22]],translocation GPHN NA FAM19A5 NA CosmicCensus, Oncogene NA NA NA NA +14:67143449 22:48749839 GPHN--FAM19A5 BS_ZVZDDW2G STARFUSION in-frame 12 3 NA [INTERCHROMOSOMAL[chr14--chr22]] GPHN NA FAM19A5 NA CosmicCensus, Oncogene NA NA NA NA +22:46577290 14:47523865 GRAMD4--MDGA2 BS_ZVZDDW2G ARRIBA other 21 2 high [INTERCHROMOSOMAL[chr22--chr14]],translocation/5'-5' GRAMD4 NA MDGA2 NA NA NA NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_ZVZDDW2G ARRIBA frameshift 3 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +14:31321499 22:48811960 HEATR5A--FAM19A5 BS_ZVZDDW2G ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr14--chr22]],translocation HEATR5A NA FAM19A5 NA NA NA NA NA NA +3:178801793 3:178982465 KCNMB2-AS1--KCNMB2-AS1(122060)/ZMAT3(34758) BS_ZVZDDW2G ARRIBA other 2 3 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178801793 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_ZVZDDW2G ARRIBA other 2 0 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +14:44961597 14:48150939 KLHL28--AL359212.1(104723)/AL358335.3(168129) BS_ZVZDDW2G ARRIBA other 2 0 high [],inversion KLHL28 NA AL359212.1 AL358335.3 NA NA NA NA NA +22:33166636 14:20985141 LARGE1--AL355922.3(75)/METTL17(4629) BS_ZVZDDW2G ARRIBA other 3 0 medium [],translocation LARGE1 NA AL355922.3 METTL17 NA NA NA NA NA +22:33919995 14:99948108 LARGE1--RNU1-47P(2631)/VDAC3P1(16421) BS_ZVZDDW2G ARRIBA other 9 0 medium [],translocation LARGE1 NA RNU1-47P VDAC3P1 NA NA NA NA NA +2:8312726 2:8392968 LINC00299--LINC00299(9347)/AC011747.2(150624) BS_ZVZDDW2G ARRIBA other 1 0 low [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA +14:38946692 14:65247723 LINC00639--AL355076.2 BS_ZVZDDW2G ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr14:26.29Mb]],duplication LINC00639 NA AL355076.2 NA NA NA NA NA NA +14:38948178 14:65247723 LINC00639--AL355076.2 BS_ZVZDDW2G ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr14:26.29Mb]],duplication LINC00639 NA AL355076.2 NA NA NA NA NA NA +14:38941520 14:65247723 LINC00639--AL355076.2 BS_ZVZDDW2G ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr14:26.29Mb]],duplication LINC00639 NA AL355076.2 NA NA NA NA NA NA +14:38946692 14:65158557 LINC00639--RNU2-14P(34015)/LINC02324(54336) BS_ZVZDDW2G ARRIBA other 4 0 medium [],duplication LINC00639 NA RNU2-14P LINC02324 NA NA NA NA NA +14:74585854 14:27220802 LTBP2--AL110292.1(60382)/AL390334.1(37915) BS_ZVZDDW2G ARRIBA frameshift 4 0 medium [],deletion LTBP2 NA AL110292.1 AL390334.1 NA NA NA NA NA +22:27789639 22:31344723 MN1--PATZ1 BS_ZVZDDW2G ARRIBA in-frame 109 17 high [CCLE,INTRACHROMOSOMAL[chr22:3.52Mb]],duplication MN1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +22:27796763 22:31335863 MN1--PATZ1 BS_ZVZDDW2G ARRIBA frameshift 1 0 low [CCLE,INTRACHROMOSOMAL[chr22:3.52Mb]],duplication MN1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +22:27789639 22:31344723 MN1--PATZ1 BS_ZVZDDW2G STARFUSION other 71 19 NA [CCLE,INTRACHROMOSOMAL[chr22:3.52Mb]] MN1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +14:33367268 22:23791756 NPAS3--SMARCB1 BS_ZVZDDW2G ARRIBA in-frame 17 7 high [INTERCHROMOSOMAL[chr14--chr22]],translocation NPAS3 NA SMARCB1 NA TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +14:33367268 22:23791756 NPAS3--SMARCB1 BS_ZVZDDW2G STARFUSION in-frame 19 7 NA [INTERCHROMOSOMAL[chr14--chr22]] NPAS3 NA SMARCB1 NA TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +14:73355626 14:21782179 NUMB--TRAV7 BS_ZVZDDW2G ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr14:51.49Mb]],inversion NUMB NA TRAV7 NA TumorSuppressorGene NA NA NA NA +11:64001520 11:64103194 OTUB1--FLRT1 BS_ZVZDDW2G STARFUSION other 25 2 NA [INTRACHROMOSOMAL[chr11:0.10Mb]] OTUB1 NA FLRT1 NA NA NA NA NA NA +14:70947123 14:60796217 PCNX1--MNAT1 BS_ZVZDDW2G ARRIBA in-frame 51 4 high [INTRACHROMOSOMAL[chr14:9.94Mb]],duplication PCNX1 NA MNAT1 NA NA Oncogene NA NA NA +14:70947123 14:60796217 PCNX1--MNAT1 BS_ZVZDDW2G STARFUSION in-frame 51 4 NA [INTRACHROMOSOMAL[chr14:9.94Mb]] PCNX1 NA MNAT1 NA NA Oncogene NA NA NA +22:20824326 14:46902933 PI4KA--MDGA2 BS_ZVZDDW2G ARRIBA frameshift 10 2 high [INTERCHROMOSOMAL[chr22--chr14]],translocation/5'-5' PI4KA NA MDGA2 NA Kinase NA NA NA NA +22:31290965 14:72352095 PIK3IP1--RGS6 BS_ZVZDDW2G ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr22--chr14]],translocation PIK3IP1 NA RGS6 NA NA NA NA NA NA +22:31290965 14:72292287 PIK3IP1--RGS6 BS_ZVZDDW2G ARRIBA frameshift 2 2 high [INTERCHROMOSOMAL[chr22--chr14]],translocation PIK3IP1 NA RGS6 NA NA NA NA NA NA +22:21952792 14:22070930 PPM1F--TRAV22 BS_ZVZDDW2G ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr22--chr14]],translocation PPM1F NA TRAV22 NA NA NA NA NA NA +22:44733226 22:17947402 PRR5--MICAL3 BS_ZVZDDW2G ARRIBA other 9 4 medium [INTRACHROMOSOMAL[chr22:26.64Mb]],duplication/5'-5' PRR5 NA MICAL3 NA TumorSuppressorGene NA NA NA NA +22:44733226 22:17947402 PRR5-ARHGAP8--MICAL3 BS_ZVZDDW2G ARRIBA other 9 4 medium [INTRACHROMOSOMAL[chr22:26.68Mb]],duplication/5'-5' PRR5-ARHGAP8 NA MICAL3 NA NA NA NA NA NA +14:35808730 22:20820611 RALGAPA1--PI4KA BS_ZVZDDW2G ARRIBA frameshift 6 2 high [INTERCHROMOSOMAL[chr14--chr22]],translocation RALGAPA1 NA PI4KA NA NA Kinase NA NA NA +14:92513976 22:33761558 RIN3--LARGE1 BS_ZVZDDW2G ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr14--chr22]],translocation RIN3 NA LARGE1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ZVZDDW2G ARRIBA other 10 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:77552096 22:21738193 SPTLC2--YPEL1(2359)/MAPK1(16307) BS_ZVZDDW2G ARRIBA frameshift 2 0 medium [],translocation SPTLC2 NA YPEL1 MAPK1 NA NA NA CosmicCensus, Oncogene, Kinase NA +14:74799697 22:27130944 YLPM1--AL008638.6(23925)/AL008638.1(12534) BS_ZVZDDW2G ARRIBA frameshift 14 2 high [],translocation YLPM1 NA AL008638.6 AL008638.1 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ZWR9W4FX ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ZWR9W4FX ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:17134261 8:17085236 AC079193.2--MICU3 BS_ZWR9W4FX ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr8:0.01Mb],LOCAL_REARRANGEMENT:+:[8537]],duplication AC079193.2 NA MICU3 NA NA NA NA NA NA +16:14932796 16:14766447 AC138932.1--AC136443.2 BS_ZWR9W4FX ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC138932.1 NA AC136443.2 NA NA NA NA NA NA +5:90985522 5:90965415 ADGRV1--ADGRV1 BS_ZWR9W4FX ARRIBA frameshift 5 0 low [SELFIE,INTRACHROMOSOMAL[chr5:0.64Mb]],duplication/non-canonical_splicing ADGRV1 NA ADGRV1 NA NA NA NA NA NA +16:14932796 16:14766447 NPIPA1--AC136443.2 BS_ZWR9W4FX ARRIBA other 9 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' NPIPA1 NA AC136443.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ZWR9W4FX ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:71552539 9:70864511 TRPM3(105635)/RPL35AP21(37062)--TRPM3 BS_ZWR9W4FX ARRIBA other 3 0 high [],deletion TRPM3 RPL35AP21 TRPM3 NA NA NA NA NA NA +6:52995787 9:35657893 7SK--RMRP BS_ZXYDSBM9 STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr1--chr9]] 7SK NA RMRP NA NA Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ZXYDSBM9 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ZXYDSBM9 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:87156514 2:87125198 AC083899.1--AC092651.1(4218)/AC083899.1(192) BS_ZXYDSBM9 ARRIBA other 9 0 medium [],duplication AC083899.1 NA AC092651.1 AC083899.1 NA NA NA NA NA +10:4889923 10:4830675 AKR1C6P--AKR1E2 BS_ZXYDSBM9 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr10:0.02Mb],LOCAL_INVERSION:-:+:[23839]],duplication/3'-3' AKR1C6P NA AKR1E2 NA NA NA NA NA NA +9:38462233 9:38426650 AL390726.6--IGFBPL1(2203)/AL390726.6(7046) BS_ZXYDSBM9 ARRIBA other 7 0 high [],duplication AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_ZXYDSBM9 ARRIBA frameshift 11 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_ZXYDSBM9 ARRIBA frameshift 12 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_ZXYDSBM9 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_ZXYDSBM9 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_ZXYDSBM9 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_ZXYDSBM9 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:210919640 1:211019256 AL590132.1--KCNH1 BS_ZXYDSBM9 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:181580776 1:181577766 CACNA1E--CACNA1E BS_ZXYDSBM9 ARRIBA frameshift 13 1 low [SELFIE,INTRACHROMOSOMAL[chr1:0.39Mb]],duplication/non-canonical_splicing CACNA1E NA CACNA1E NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--MSANTD3-TMEFF1 BS_ZXYDSBM9 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA MSANTD3-TMEFF1 NA NA NA NA NA NA +9:100578551 9:100576516 CAVIN4--TMEFF1 BS_ZXYDSBM9 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr9:0.00Mb],LOCAL_REARRANGEMENT:+:[443]],duplication CAVIN4 NA TMEFF1 NA NA TumorSuppressorGene NA NA NA +12:132844027 12:132861634 CHFR--CHFR BS_ZXYDSBM9 ARRIBA in-frame 3 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing CHFR NA CHFR NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA +1:224625303 1:11676141 CNIH3--MAD2L2 BS_ZXYDSBM9 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr1:212.74Mb]],inversion CNIH3 NA MAD2L2 NA NA NA NA NA NA +10:103056964 10:15782226 CNNM2--MINDY3 BS_ZXYDSBM9 ARRIBA in-frame 3 0 high [INTRACHROMOSOMAL[chr10:87.06Mb]],inversion CNNM2 NA MINDY3 NA NA NA NA NA NA +7:29181290 7:29186547 CPVL--CPVL BS_ZXYDSBM9 ARRIBA other 3 2 low [SELFIE,INTRACHROMOSOMAL[chr7:0.20Mb]],duplication/non-canonical_splicing CPVL NA CPVL NA NA NA NA NA NA +8:131970643 8:131944745 EFR3A--EFR3A BS_ZXYDSBM9 ARRIBA frameshift 6 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr8:0.11Mb]],duplication/non-canonical_splicing EFR3A NA EFR3A NA NA NA NA NA NA +2:16588050 2:15997609 FAM49A--AC010145.1 BS_ZXYDSBM9 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr2:0.49Mb]],deletion FAM49A NA AC010145.1 NA Oncogene NA NA NA NA +2:16588050 2:15941097 FAM49A--MYCNOS BS_ZXYDSBM9 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr2:0.61Mb]],deletion FAM49A NA MYCNOS NA Oncogene NA NA NA NA +2:16588050 2:15987522 FAM49A--RN7SL104P(36541)/AC010145.1(9527) BS_ZXYDSBM9 ARRIBA frameshift 4 0 medium [],deletion FAM49A NA RN7SL104P AC010145.1 Oncogene NA NA NA NA +6:117566854 6:111816195 GOPC--FYN BS_ZXYDSBM9 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr6:5.69Mb]],deletion GOPC NA FYN NA CosmicCensus, Oncogene Kinase, Oncogene, Kinase NA NA NA +6:117566854 6:111780635 GOPC--FYN BS_ZXYDSBM9 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:5.69Mb]],deletion GOPC NA FYN NA CosmicCensus, Oncogene Kinase, Oncogene, Kinase NA NA NA +6:34132978 6:34133859 GRM4--GRM4 BS_ZXYDSBM9 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr6:0.14Mb]],duplication/non-canonical_splicing GRM4 NA GRM4 NA NA NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_ZXYDSBM9 ARRIBA frameshift 11 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_ZXYDSBM9 ARRIBA frameshift 12 2 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_ZXYDSBM9 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_ZXYDSBM9 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_ZXYDSBM9 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_ZXYDSBM9 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_ZXYDSBM9 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:211019256 KCNH1--AL590132.1 BS_ZXYDSBM9 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--KCNH1 BS_ZXYDSBM9 ARRIBA frameshift 12 2 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +21:37714211 21:37715131 KCNJ6--KCNJ6 BS_ZXYDSBM9 ARRIBA in-frame 4 0 low [SELFIE,INTRACHROMOSOMAL[chr21:0.31Mb]],duplication/non-canonical_splicing KCNJ6 NA KCNJ6 NA NA NA NA NA NA +3:163177901 3:163187264 LINC01192--LINC01192 BS_ZXYDSBM9 ARRIBA other 15 4 low [SELFIE,INTRACHROMOSOMAL[chr3:0.23Mb]],duplication/non-canonical_splicing LINC01192 NA LINC01192 NA NA NA NA NA NA +X:20042502 X:20052988 MAP7D2--MAP7D2 BS_ZXYDSBM9 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chrX:0.11Mb]],duplication/non-canonical_splicing MAP7D2 NA MAP7D2 NA NA NA NA NA NA +13:108910150 13:108883059 MYO16--MYO16 BS_ZXYDSBM9 ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.61Mb]],duplication/non-canonical_splicing MYO16 NA MYO16 NA NA NA NA NA NA +2:15534543 2:87116535 NBAS--AC083899.1 BS_ZXYDSBM9 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr2:71.56Mb]],inversion NBAS NA AC083899.1 NA NA NA NA NA NA +2:15534543 2:87116535 NBAS--AC125232.2(60735)/AC092651.1(1999) BS_ZXYDSBM9 ARRIBA frameshift 8 3 high [],inversion NBAS NA AC125232.2 AC092651.1 NA NA NA NA NA +2:15534543 2:87116535 NBAS--AC125232.2(60735)/AC092651.1(1999) BS_ZXYDSBM9 ARRIBA frameshift 6 3 high [],inversion NBAS NA AC125232.2 AC092651.1 NA NA NA NA NA +15:75943572 15:76011286 NRG4--NRG4 BS_ZXYDSBM9 ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr15:0.12Mb]],duplication/non-canonical_splicing NRG4 NA NRG4 NA NA NA NA NA NA +7:153749008 7:149891301 PAXBP1P1(299133)/DPP6(138089)--AC092681.1 BS_ZXYDSBM9 ARRIBA other 7 0 high [],inversion PAXBP1P1 DPP6 AC092681.1 NA NA NA NA NA NA +9:35657801 14:20343400 RMRP--AL355075.4 BS_ZXYDSBM9 STARFUSION other 3 12 NA [INTERCHROMOSOMAL[chr9--chr14]] RMRP NA AL355075.4 NA Oncogene NA NA NA NA +6:52995906 14:49862655 RN7SK--RN7SL2 BS_ZXYDSBM9 STARFUSION other 6 15 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +6:52995786 14:49862655 RN7SK--RN7SL2 BS_ZXYDSBM9 STARFUSION other 5 15 NA [INTERCHROMOSOMAL[chr6--chr14]] RN7SK NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ZXYDSBM9 ARRIBA other 25 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:104756760 11:67299058 SIVA1--ANKRD13D BS_ZXYDSBM9 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr14--chr11]],translocation SIVA1 NA ANKRD13D NA NA NA NA NA NA +8:52212079 8:52230077 ST18--ST18 BS_ZXYDSBM9 ARRIBA frameshift 19 2 low [SELFIE,INTRACHROMOSOMAL[chr8:0.35Mb]],duplication/non-canonical_splicing ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_ZXYDSBM9 ARRIBA in-frame 7 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +17:21000942 14:49862817 USP22--RN7SL2 BS_ZXYDSBM9 STARFUSION other 11 4 NA [FA_CancerSupp,INTERCHROMOSOMAL[chr17--chr14]] USP22 NA RN7SL2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ZZMYDZJW ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ZZMYDZJW ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +7:138861139 7:140787584 KIAA1549--BRAF BS_ZZMYDZJW ARRIBA in-frame 5 0 high [Cosmic,ChimerPub,ChimerSeq,chimerdb_pubmed,ChimerKB,INTRACHROMOSOMAL[chr7:1.74Mb]],duplication KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_ZZMYDZJW ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ZZPBANDD ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ZZPBANDD ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_ZZPBANDD ARRIBA other 9 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +1:210919640 1:210920069 AL590132.1--KCNH1 BS_ZZPBANDD ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211090562 1:211107377 AL590132.1--KCNH1 BS_ZZPBANDD ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211107377 AL590132.1--KCNH1 BS_ZZPBANDD ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211090690 AL590132.1--KCNH1 BS_ZZPBANDD ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211019256 AL590132.1--KCNH1 BS_ZZPBANDD ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211018864 1:211082898 AL590132.1--KCNH1 BS_ZZPBANDD ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +1:211082780 1:211090690 AL590132.1--KCNH1 BS_ZZPBANDD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA +2:231331897 2:231282059 ARMC9--ARMC9 BS_ZZPBANDD ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr2:0.18Mb]],duplication/non-canonical_splicing ARMC9 NA ARMC9 NA NA NA NA NA NA +3:2903005 3:2883145 CNTN4--CNTN4 BS_ZZPBANDD ARRIBA in-frame 2 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA +1:197442292 1:197328422 CRB1--CRB1 BS_ZZPBANDD ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.21Mb]],duplication/non-canonical_splicing CRB1 NA CRB1 NA NA NA NA NA NA +3:55683794 3:55992250 ERC2--ERC2 BS_ZZPBANDD ARRIBA in-frame 22 2 low [SELFIE,INTRACHROMOSOMAL[chr3:0.96Mb]],duplication/non-canonical_splicing ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA +X:72462004 X:72573724 HDAC8--HDAC8(621)/PHKA1(5090) BS_ZZPBANDD ARRIBA frameshift 4 0 high [],duplication HDAC8 NA HDAC8 PHKA1 NA NA NA NA NA +12:67436 6:184140 IQSEC3--AL035696.3 BS_ZZPBANDD ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr12--chr6]],translocation/5'-5' IQSEC3 NA AL035696.3 NA NA NA NA NA NA +1:211018864 1:211090690 KCNH1--AL590132.1 BS_ZZPBANDD ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:210919640 1:210920069 KCNH1--AL590132.1 BS_ZZPBANDD ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211090690 KCNH1--AL590132.1 BS_ZZPBANDD ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018783 1:211019256 KCNH1--AL590132.1 BS_ZZPBANDD ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211082898 KCNH1--AL590132.1 BS_ZZPBANDD ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211082780 1:211107377 KCNH1--AL590132.1 BS_ZZPBANDD ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211090562 1:211107377 KCNH1--AL590132.1 BS_ZZPBANDD ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211019256 KCNH1--AL590132.1 BS_ZZPBANDD ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.28Mb]],duplication KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA +1:211018864 1:211090690 KCNH1--KCNH1 BS_ZZPBANDD ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.46Mb]],duplication/non-canonical_splicing KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA +2:162504443 2:162518158 KCNH7--KCNH7 BS_ZZPBANDD ARRIBA frameshift 3 0 low [SELFIE,INTRACHROMOSOMAL[chr2:0.47Mb]],duplication/non-canonical_splicing KCNH7 NA KCNH7 NA NA NA NA NA NA +11:33552241 11:33541802 KIAA1549L--AL133399.1(90859)/KIAA1549L(270) BS_ZZPBANDD ARRIBA frameshift 1 3 medium [],duplication KIAA1549L NA AL133399.1 KIAA1549L NA NA NA NA NA +2:8287338 2:8392968 LINC00299--LINC00299(9347)/AC011747.2(150624) BS_ZZPBANDD ARRIBA other 4 0 high [],duplication LINC00299 NA LINC00299 AC011747.2 NA NA NA NA NA +6:61606290 6:61697253 MTRNR2L9(31888)/AL049544.1(23943)--KHDRBS2 BS_ZZPBANDD ARRIBA other 3 0 medium [],duplication MTRNR2L9 AL049544.1 KHDRBS2 NA NA NA NA NA NA +1:98953070 1:98956741 PLPPR5--PLPPR5 BS_ZZPBANDD ARRIBA in-frame 6 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.11Mb]],duplication/non-canonical_splicing PLPPR5 NA PLPPR5 NA NA NA NA NA NA +20:20559465 20:20396731 RALGAPA2--RALGAPA2 BS_ZZPBANDD ARRIBA other 2 0 low [SELFIE,INTRACHROMOSOMAL[chr20:0.32Mb]],inversion/5'-5' RALGAPA2 NA RALGAPA2 NA NA NA NA NA NA +13:78274337 13:78188309 RNF219-AS1--RNF219-AS1 BS_ZZPBANDD ARRIBA other 3 0 low [SELFIE,INTRACHROMOSOMAL[chr13:0.70Mb]],duplication/non-canonical_splicing RNF219-AS1 NA RNF219-AS1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ZZPBANDD ARRIBA other 38 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:61996542 14:61970132 SYT16--SYT16 BS_ZZPBANDD ARRIBA in-frame 4 1 low [SELFIE,INTRACHROMOSOMAL[chr14:0.30Mb]],duplication/non-canonical_splicing SYT16 NA SYT16 NA NA NA NA NA NA +12:103965852 12:125316602 TDG--TMEM132B BS_ZZPBANDD ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ZZWMD6FA ARRIBA other 57 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ZZWMD6FA ARRIBA other 57 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:63664647 1:162720491 AC022387.1--DDR2 BS_ZZWMD6FA ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr10--chr1]],translocation/3'-3' AC022387.1 NA DDR2 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA +2:29694850 2:28799199 ALK--PPP1CB BS_ZZWMD6FA ARRIBA frameshift 84 18 high [INTRACHROMOSOMAL[chr2:0.39Mb]],inversion ALK NA PPP1CB NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +2:29694850 2:28799199 ALK--PPP1CB BS_ZZWMD6FA STARFUSION frameshift 86 19 NA [INTRACHROMOSOMAL[chr2:0.39Mb]] ALK NA PPP1CB NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +2:29694850 2:28799199 ALK--SPDYA BS_ZZWMD6FA ARRIBA frameshift 34 0 medium [INTRACHROMOSOMAL[chr2:0.34Mb]],inversion ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +2:29694850 2:28814613 ALK--SPDYA BS_ZZWMD6FA ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.34Mb]],inversion ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +2:29694850 2:28840172 ALK--SPDYA BS_ZZWMD6FA ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:0.34Mb]],inversion ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +2:29694850 2:28799199 ALK--SPDYA BS_ZZWMD6FA STARFUSION other 86 17 NA [INTRACHROMOSOMAL[chr2:0.34Mb]] ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +1:62866598 1:62803719 ATG4C(1085)/AC099794.1(29411)--ATG4C BS_ZZWMD6FA ARRIBA other 3 0 medium [],duplication ATG4C AC099794.1 ATG4C NA NA NA NA NA NA +8:138151194 8:138153216 FAM135B--FAM135B BS_ZZWMD6FA ARRIBA frameshift 6 0 low [SELFIE,INTRACHROMOSOMAL[chr8:0.37Mb]],duplication/non-canonical_splicing FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA +X:14059556 X:14529948 GEMIN8(29663)/AC002524.1(184826)--GLRA2 BS_ZZWMD6FA ARRIBA other 4 0 high [],deletion GEMIN8 AC002524.1 GLRA2 NA NA NA NA NA NA +3:178859489 3:178965496 KCNMB2-AS1--KCNMB2-AS1(105091)/ZMAT3(51727) BS_ZZWMD6FA ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178801793 3:179004184 KCNMB2-AS1--KCNMB2-AS1(143779)/ZMAT3(13039) BS_ZZWMD6FA ARRIBA other 2 0 medium [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +3:178801793 3:178921910 KCNMB2-AS1--KCNMB2-AS1(61505)/ZMAT3(95313) BS_ZZWMD6FA ARRIBA other 2 1 high [],duplication KCNMB2-AS1 NA KCNMB2-AS1 ZMAT3 NA NA NA NA NA +4:145159503 4:146093968 OTUD4--AC097372.3 BS_ZZWMD6FA ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr4:0.90Mb]],duplication OTUD4 NA AC097372.3 NA NA NA NA NA NA +2:28788728 2:29223634 PPP1CB--ALK BS_ZZWMD6FA ARRIBA in-frame 117 18 high [INTRACHROMOSOMAL[chr2:0.39Mb]],inversion PPP1CB NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:28788728 2:29223634 PPP1CB--ALK BS_ZZWMD6FA STARFUSION other 118 18 NA [INTRACHROMOSOMAL[chr2:0.39Mb]] PPP1CB NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ZZWMD6FA ARRIBA other 57 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +2:96281838 1:19180134 SNRNP200--UBR4 BS_ZZWMD6FA ARRIBA frameshift 1 2 medium [INTERCHROMOSOMAL[chr2--chr1]],translocation SNRNP200 NA UBR4 NA NA NA NA NA NA +2:28788728 2:29223634 SPDYA--ALK BS_ZZWMD6FA ARRIBA other 108 16 high [INTRACHROMOSOMAL[chr2:0.34Mb]],inversion SPDYA NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:28788728 2:29223634 SPDYA--ALK BS_ZZWMD6FA STARFUSION other 118 16 NA [INTRACHROMOSOMAL[chr2:0.34Mb]] SPDYA NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +11:35918011 11:36227085 AC090692.1--LDLRAD3 BS_0VXZCRJS ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.03Mb],LOCAL_INVERSION:-:+:[25242]],inversion AC090692.1 NA LDLRAD3 NA NA NA NA NA NA +3:117997182 4:190118361 AC092691.1--DUX4L2(26082)/DUX4(55413) BS_0VXZCRJS ARRIBA other 2 2 high [],translocation AC092691.1 NA DUX4L2 DUX4 NA NA NA Oncogene, TranscriptionFactor NA +20:2709642 17:44180264 EBF4--ASB16-AS1 BS_0VXZCRJS ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr20--chr17]],translocation EBF4 NA ASB16-AS1 NA TranscriptionFactor NA NA NA NA +5:14420021 5:16483472 TRIO--RETREG1 BS_0VXZCRJS ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:1.94Mb]],inversion TRIO NA RETREG1 NA Kinase, Oncogene, Kinase NA NA NA NA +5:14441360 5:16572102 TRIO--RETREG1 BS_0VXZCRJS ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:1.94Mb]],inversion TRIO NA RETREG1 NA Kinase, Oncogene, Kinase NA NA NA NA +16:29116326 16:88224112 AC009093.8--LINC02182(28895)/AC138512.1(10673) BS_0ZA67BBC ARRIBA other 2 0 medium [],deletion AC009093.8 NA LINC02182 AC138512.1 NA NA NA NA NA +4:113174413 16:29082044 ANK2--AC009093.3 BS_0ZA67BBC ARRIBA other 7 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation ANK2 NA AC009093.3 NA NA NA NA NA NA +1:60595538 1:60596838 LINC01748--LINC01748 BS_0ZA67BBC ARRIBA other 2 0 medium [SELFIE,INTRACHROMOSOMAL[chr1:0.12Mb]],duplication LINC01748 NA LINC01748 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_1N7MQZGR ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_1N7MQZGR ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +12:100207786 12:101760143 ACTR6--GNPTAB BS_1N7MQZGR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:1.50Mb]],inversion ACTR6 NA GNPTAB NA NA NA NA NA NA +X:77910835 X:77523401 ATP7A--ATRX BS_1N7MQZGR ARRIBA other 1 1 high [INTRACHROMOSOMAL[chrX:0.12Mb]],inversion ATP7A NA ATRX NA NA CosmicCensus, Oncogene NA NA NA +4:78833687 4:82399918 BMP2K--AC124016.1(15891)/IGBP1P4(1660) BS_1N7MQZGR ARRIBA frameshift 2 0 medium [],deletion BMP2K NA AC124016.1 IGBP1P4 Kinase NA NA NA NA +4:94875900 4:94654460 BMPR1B--PDLIM5 BS_1N7MQZGR ARRIBA other 1 0 low [GTEx,CCLE,INTRACHROMOSOMAL[chr4:0.09Mb],LOCAL_REARRANGEMENT:+:[89741]],duplication BMPR1B NA PDLIM5 NA Kinase, Kinase NA NA NA TCGAFusion +4:94758068 4:94573351 BMPR1B--PDLIM5 BS_1N7MQZGR ARRIBA other 1 0 low [GTEx,CCLE,INTRACHROMOSOMAL[chr4:0.09Mb],LOCAL_REARRANGEMENT:+:[89741]],duplication BMPR1B NA PDLIM5 NA Kinase, Kinase NA NA NA TCGAFusion +12:101780152 12:100218415 GNPTAB--ACTR6 BS_1N7MQZGR ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:1.50Mb]],inversion GNPTAB NA ACTR6 NA NA NA NA NA NA +9:128393142 9:95086682 MIR219A2--C9orf3 BS_1N7MQZGR ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr9:33.31Mb]],inversion MIR219A2 NA C9orf3 NA NA NA NA NA NA +5:16741804 5:17275208 MYO10--BASP1 BS_1N7MQZGR ARRIBA other 2 0 low [CCLE,INTRACHROMOSOMAL[chr5:0.13Mb]],inversion MYO10 NA BASP1 NA NA TumorSuppressorGene NA NA NA +1:65993142 1:65364635 PDE4B--DNAJC6 BS_1N7MQZGR ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr1:0.38Mb]],duplication PDE4B NA DNAJC6 NA NA Oncogene NA NA NA +1:44412722 1:44319744 RNF220--ERI3 BS_1N7MQZGR ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.05Mb],LOCAL_INVERSION:+:-:[49934]],inversion RNF220 NA ERI3 NA Oncogene NA NA NA NA +1:44412722 1:44339322 RNF220--ERI3 BS_1N7MQZGR ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.05Mb],LOCAL_INVERSION:+:-:[49934]],inversion RNF220 NA ERI3 NA Oncogene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_1N7MQZGR ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:19143123 11:19060391 ZDHHC13--MRGPRX2 BS_1N7MQZGR ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr11:0.06Mb],LOCAL_INVERSION:+:-:[56418]],duplication/5'-5' ZDHHC13 NA MRGPRX2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_21ET39G7 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_21ET39G7 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:115262930 3:115676013 AC046136.1--GAP43 BS_21ET39G7 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA +1:205526837 11:118656683 CDK18--PHLDB1 BS_21ET39G7 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr1--chr11]],translocation CDK18 NA PHLDB1 NA Oncogene, Kinase NA NA NA NA +1:205504878 11:118655605 CDK18--PHLDB1 BS_21ET39G7 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr1--chr11]],translocation CDK18 NA PHLDB1 NA Oncogene, Kinase NA NA NA NA +11:61421390 11:60394946 CPSF7--MS4A7 BS_21ET39G7 ARRIBA in-frame 5 1 medium [INTRACHROMOSOMAL[chr11:1.01Mb]],inversion CPSF7 NA MS4A7 NA NA NA NA NA NA +11:61421390 11:60392685 CPSF7--MS4A7 BS_21ET39G7 ARRIBA in-frame 2 2 medium [INTRACHROMOSOMAL[chr11:1.01Mb]],inversion CPSF7 NA MS4A7 NA NA NA NA NA NA +11:61421390 11:60393787 CPSF7--MS4A7 BS_21ET39G7 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr11:1.01Mb]],inversion CPSF7 NA MS4A7 NA NA NA NA NA NA +12:8235999 12:8226309 LINC02449--FAM90A1 BS_21ET39G7 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr12:0.01Mb],LOCAL_INVERSION:+:-:[7797]],duplication/5'-5' LINC02449 NA FAM90A1 NA NA NA NA NA NA +17:82460073 16:28581056 NARF--SGF29 BS_21ET39G7 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr17--chr16]],translocation NARF NA SGF29 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_21ET39G7 ARRIBA other 22 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:47310276 5:134206131 STIL--PPP2CA BS_21ET39G7 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr1--chr5]],translocation STIL NA PPP2CA NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA +7:129054651 6:35857368 TNPO3--SRPK1 BS_21ET39G7 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr7--chr6]],translocation TNPO3 NA SRPK1 NA NA Kinase, Kinase NA NA NA +22:21710630 10:179992 YPEL1--ZMYND11 BS_21ET39G7 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr22--chr10]],translocation YPEL1 NA ZMYND11 NA NA TumorSuppressorGene NA NA NA +1:171247581 1:170807604 AL445673.1--PRRX1(68185)/MROH9(127867) BS_2JP7RBMB ARRIBA other 2 1 medium [],deletion AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +11:57809466 11:57476162 CTNND1--RTN4RL2 BS_2JP7RBMB ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr11:0.28Mb]],duplication CTNND1 NA RTN4RL2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +17:75405489 17:61420228 GRB2--C17orf82(6948)/TBX4(32176) BS_2JP7RBMB ARRIBA other 1 2 medium [],deletion GRB2 NA C17orf82 TBX4 Oncogene NA NA TranscriptionFactor NA +3:174737746 3:173604279 NAALADL2--NLGN1 BS_2JP7RBMB ARRIBA other 1 0 low [CCLE,ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr3:0.15Mb]],duplication NAALADL2 NA NLGN1 NA NA NA NA NA TCGAFusion +3:173807832 3:175096790 NLGN1--NAALADL2 BS_2JP7RBMB ARRIBA in-frame 1 0 low [FA_CancerSupp,CCLE,INTRACHROMOSOMAL[chr3:0.15Mb]],deletion NLGN1 NA NAALADL2 NA NA NA NA NA NA +4:54297714 4:52103154 PDGFRA--SPATA18(5862)/AC097522.1(337340) BS_2JP7RBMB ARRIBA other 12 3 medium [],duplication PDGFRA NA SPATA18 AC097522.1 Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +17:78031842 17:75393765 TNRC6C--GRB2 BS_2JP7RBMB ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr17:2.55Mb]],inversion TNRC6C NA GRB2 NA NA Oncogene NA NA NA +22:29767548 1:109090885 UQCR10--TMEM167B BS_2JP7RBMB ARRIBA in-frame 2 1 medium [INTERCHROMOSOMAL[chr22--chr1]],translocation/5'-5' UQCR10 NA TMEM167B NA NA NA NA NA NA +17:50180710 9:95086682 HILS1--C9orf3 BS_3AC3SRWH ARRIBA other 1 1 high [INTERCHROMOSOMAL[chr17--chr9]],translocation HILS1 NA C9orf3 NA NA NA NA NA NA +15:99598511 21:25911962 MEF2A--APP BS_3AC3SRWH ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr15--chr21]],translocation MEF2A NA APP NA TranscriptionFactor NA NA NA NA +14:56178464 14:55612019 PELI2--KTN1 BS_3AC3SRWH ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr14:0.42Mb]],duplication PELI2 NA KTN1 NA NA CosmicCensus, Oncogene NA NA TCGAFusion +2:26346289 2:101823928 SELENOI--MAP4K4 BS_3AC3SRWH ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr2:75.30Mb]],deletion SELENOI NA MAP4K4 NA NA Kinase NA NA NA +1:54226568 12:105015357 SSBP3--C12orf45 BS_3AC3SRWH ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr1--chr12]],translocation SSBP3 NA C12orf45 NA Oncogene NA NA NA NA +3:115262930 3:115676013 AC046136.1--GAP43 BS_49CJNZ06 ARRIBA other 3 2 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA +10:67147170 10:70143870 CTNNA3--TYSND1 BS_49CJNZ06 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr10:2.44Mb]],duplication CTNNA3 NA TYSND1 NA TumorSuppressorGene NA NA NA NA +22:31508376 4:179865920 DRG1--AC021193.1(8339)/NDUFB5P1(707544) BS_49CJNZ06 ARRIBA frameshift 3 0 medium [],translocation DRG1 NA AC021193.1 NDUFB5P1 NA NA NA NA NA +4:15612266 4:15017881 FBXL5--AC098829.1 BS_49CJNZ06 ARRIBA frameshift 3 2 medium [INTRACHROMOSOMAL[chr4:0.18Mb]],deletion FBXL5 NA AC098829.1 NA NA NA NA NA NA +3:115791158 3:116354210 GAP43(69668)/LSAMP(11205)--LSAMP-AS1 BS_49CJNZ06 ARRIBA other 3 1 medium [],deletion GAP43 LSAMP LSAMP-AS1 NA NA NA TumorSuppressorGene NA NA +10:67953789 10:70144961 HERC4--TYSND1 BS_49CJNZ06 ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr10:2.06Mb]],duplication HERC4 NA TYSND1 NA NA NA NA NA NA +3:4494506 3:30605558 ITPR1--LINC01985(78373)/TGFBR2(944) BS_49CJNZ06 ARRIBA other 19 6 high [],inversion ITPR1 NA LINC01985 TGFBR2 NA NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA +3:4494506 3:30625575 ITPR1--TGFBR2 BS_49CJNZ06 ARRIBA other 8 1 high [INTRACHROMOSOMAL[chr3:25.76Mb]],inversion/3'-3' ITPR1 NA TGFBR2 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +12:116277060 12:123499442 MED13L--RILPL1 BS_49CJNZ06 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr12:7.19Mb]],inversion/5'-5' MED13L NA RILPL1 NA NA NA NA NA NA +17:57262192 17:57989796 MSI2--AC015813.1 BS_49CJNZ06 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr17:0.30Mb]],inversion MSI2 NA AC015813.1 NA CosmicCensus, Oncogene NA NA NA NA +17:57262192 17:57989796 MSI2--AC015813.2 BS_49CJNZ06 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr17:0.30Mb]],inversion MSI2 NA AC015813.2 NA CosmicCensus, Oncogene NA NA NA NA +6:163478896 6:161959131 QKI--PRKN BS_49CJNZ06 ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr6:0.69Mb]],duplication/5'-5' QKI NA PRKN NA TumorSuppressorGene, CosmicCensus NA NA NA NA +22:31508376 4:179865920 SFI1--AC021193.1(8339)/NDUFB5P1(707544) BS_49CJNZ06 ARRIBA frameshift 3 1 high [],translocation SFI1 NA AC021193.1 NDUFB5P1 NA NA NA NA NA +15:89116521 10:50327322 ABHD2--SGMS1 BS_4PPHAQXF ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr15--chr10]],translocation ABHD2 NA SGMS1 NA Oncogene TumorSuppressorGene, Oncogene NA NA NA +7:150047609 7:149891301 AC092666.2--AC092681.1 BS_4PPHAQXF STARFUSION other 20 2 NA [INTRACHROMOSOMAL[chr7:0.14Mb]] AC092666.2 NA AC092681.1 NA NA NA NA NA NA +7:152367261 7:55773178 AC104692.1--PSPHP1 BS_4PPHAQXF STARFUSION other 47 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +5:216729 1:94903524 CCDC127--CNN3 BS_4PPHAQXF ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr5--chr1]],translocation CCDC127 NA CNN3 NA NA NA NA NA NA +7:90726812 7:121983665 CDK14--PTPRZ1 BS_4PPHAQXF ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:30.66Mb]],deletion CDK14 NA PTPRZ1 NA Kinase NA NA NA NA +7:90899353 7:122059753 CDK14--PTPRZ1 BS_4PPHAQXF ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:30.66Mb]],deletion CDK14 NA PTPRZ1 NA Kinase NA NA NA NA +9:26962087 9:27458256 IFT74--MOB3B BS_4PPHAQXF ARRIBA frameshift 262 114 high [INTRACHROMOSOMAL[chr9:0.26Mb]],deletion/5'-5' IFT74 NA MOB3B NA NA NA NA NA NA +5:97670684 5:97881430 LINC01340--LINC02234 BS_4PPHAQXF STARFUSION other 21 3 NA [INTRACHROMOSOMAL[chr5:0.21Mb]] LINC01340 NA LINC02234 NA NA NA NA NA NA +5:8835366 5:1075490 LINC02199--SLC12A7 BS_4PPHAQXF ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr5:7.73Mb]],deletion/3'-3' LINC02199 NA SLC12A7 NA NA NA NA NA NA +5:10353917 5:8261587 MARCH6--AC091912.1(103799)/LINC02226(71894) BS_4PPHAQXF ARRIBA frameshift 2 2 high [],duplication MARCH6 NA AC091912.1 LINC02226 NA NA NA NA NA +5:10353917 5:8303285 MARCH6--AC091912.1(145497)/LINC02226(30196) BS_4PPHAQXF ARRIBA frameshift 2 1 medium [],duplication MARCH6 NA AC091912.1 LINC02226 NA NA NA NA NA +5:10353917 5:8173196 MARCH6--AC091912.1(15408)/LINC02226(160285) BS_4PPHAQXF ARRIBA frameshift 124 58 high [],duplication MARCH6 NA AC091912.1 LINC02226 NA NA NA NA NA +5:10353917 5:8212945 MARCH6--AC091912.1(55157)/LINC02226(120536) BS_4PPHAQXF ARRIBA frameshift 5 0 high [],duplication MARCH6 NA AC091912.1 LINC02226 NA NA NA NA NA +5:10353917 5:8228670 MARCH6--AC091912.1(70882)/LINC02226(104811) BS_4PPHAQXF ARRIBA frameshift 5 3 high [],duplication MARCH6 NA AC091912.1 LINC02226 NA NA NA NA NA +5:10353917 5:8144649 MARCH6--AC091912.2(865)/AC091912.1(12892) BS_4PPHAQXF ARRIBA frameshift 4 2 high [],duplication MARCH6 NA AC091912.2 AC091912.1 NA NA NA NA NA +5:10353917 5:8389900 MARCH6--AC091965.1 BS_4PPHAQXF ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr5:1.90Mb]],duplication/5'-5' MARCH6 NA AC091965.1 NA NA NA NA NA NA +5:10353917 5:8389900 MARCH6--LINC02226 BS_4PPHAQXF ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr5:1.90Mb]],duplication/5'-5' MARCH6 NA LINC02226 NA NA NA NA NA NA +9:27455133 9:26935206 MOB3B--PLAA BS_4PPHAQXF ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr9:0.38Mb]],deletion MOB3B NA PLAA NA NA NA NA NA NA +9:27455133 9:26947362 MOB3B--PLAA BS_4PPHAQXF ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr9:0.38Mb]],deletion MOB3B NA PLAA NA NA NA NA NA NA +5:9108140 5:8083439 SEMA5A--AC091941.1(2678)/AC091912.2(60179) BS_4PPHAQXF ARRIBA frameshift 20 3 high [],deletion SEMA5A NA AC091941.1 AC091912.2 NA NA NA NA NA +5:9108140 5:10423735 SEMA5A--MARCH6 BS_4PPHAQXF STARFUSION in-frame 9 1 NA [INTRACHROMOSOMAL[chr5:0.81Mb]] SEMA5A NA MARCH6 NA NA NA NA NA NA +5:9108140 5:10423735 SEMA5A--MARCH6 BS_4PPHAQXF ARRIBA in-frame 9 1 high [INTRACHROMOSOMAL[chr5:0.81Mb]],inversion SEMA5A NA MARCH6 NA NA NA NA NA NA +5:9108140 5:8072322 SEMA5A--RNU1-76P(92018)/AC091941.1(7864) BS_4PPHAQXF ARRIBA frameshift 51 13 high [],deletion SEMA5A NA RNU1-76P AC091941.1 NA NA NA NA NA +5:1085232 22:12100134 SLC12A7--5_8S_rRNA(850175)/AC116618.1(502332) BS_4PPHAQXF ARRIBA frameshift 2 2 high [],translocation SLC12A7 NA 5_8S_rRNA AC116618.1 NA NA NA NA NA +5:1073633 5:1282624 SLC12A7--TERT BS_4PPHAQXF ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr5:0.14Mb]],duplication SLC12A7 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA TCGAFusion +13:21381434 13:59240026 ZDHHC20--POLR3KP1(168223)/RPP40P2(22654) BS_4PPHAQXF ARRIBA frameshift 37 18 high [],inversion ZDHHC20 NA POLR3KP1 RPP40P2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_4PWDGEB0 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_4PWDGEB0 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:27598122 11:2132170 CLU--INS-IGF2 BS_4PWDGEB0 STARFUSION other 3 11 NA [INTERCHROMOSOMAL[chr8--chr11]] CLU NA INS-IGF2 NA TumorSuppressorGene, Oncogene NA NA NA NA +22:29290984 22:31344635 EWSR1--PATZ1 BS_4PWDGEB0 STARFUSION other 47 26 NA [chimerdb_omim,Cosmic,chimerdb_pubmed,ChimerKB,ChimerSeq,INTRACHROMOSOMAL[chr22:2.03Mb]] EWSR1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +22:29288786 22:31344613 EWSR1--PATZ1 BS_4PWDGEB0 STARFUSION in-frame 17 26 NA [chimerdb_omim,Cosmic,chimerdb_pubmed,ChimerKB,ChimerSeq,INTRACHROMOSOMAL[chr22:2.03Mb]] EWSR1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +22:29290984 22:31344635 EWSR1--PATZ1 BS_4PWDGEB0 ARRIBA other 45 26 medium [chimerdb_omim,Cosmic,chimerdb_pubmed,ChimerKB,ChimerSeq,INTRACHROMOSOMAL[chr22:2.03Mb]],inversion EWSR1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +4:15612266 4:15017881 FBXL5--AC098829.1 BS_4PWDGEB0 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.18Mb]],deletion FBXL5 NA AC098829.1 NA NA NA NA NA NA +9:28295208 9:27842611 LINGO2--AL360014.1 BS_4PWDGEB0 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr9:0.10Mb]],inversion LINGO2 NA AL360014.1 NA NA NA NA NA NA +9:28295208 9:12340752 LINGO2--RNU2-47P(40301)/TYRP1(344687) BS_4PWDGEB0 ARRIBA other 3 0 medium [],inversion LINGO2 NA RNU2-47P TYRP1 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_4PWDGEB0 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +14:56580074 14:96833467 TMEM260--VRK1 BS_4PWDGEB0 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr14:40.15Mb]],deletion TMEM260 NA VRK1 NA NA Kinase, Oncogene, Kinase NA NA NA +6:68639432 6:68113232 ADGRB3--AL646090.1(52730)/LINC02549(113740) BS_58YXHGAJ ARRIBA frameshift 4 0 high [],inversion ADGRB3 NA AL646090.1 LINC02549 NA NA NA NA NA +6:68639432 6:68135422 ADGRB3--AL646090.1(74920)/LINC02549(91550) BS_58YXHGAJ ARRIBA frameshift 4 1 high [],inversion ADGRB3 NA AL646090.1 LINC02549 NA NA NA NA NA +6:69076038 6:33038971 ADGRB3--HLA-DOA(29359)/HLA-DPA1(25598) BS_58YXHGAJ ARRIBA frameshift 4 0 high [],duplication ADGRB3 NA HLA-DOA HLA-DPA1 NA NA NA NA NA +6:69076038 6:33076038 ADGRB3--HLA-DPB1 BS_58YXHGAJ ARRIBA in-frame 1 2 high [INTRACHROMOSOMAL[chr6:35.55Mb]],duplication ADGRB3 NA HLA-DPB1 NA NA NA NA NA NA +6:161273938 6:69233290 AGPAT4--ADGRB3 BS_58YXHGAJ STARFUSION other 4 3 NA [INTRACHROMOSOMAL[chr6:91.74Mb]] AGPAT4 NA ADGRB3 NA NA NA NA NA NA +6:161273938 6:69233290 AGPAT4--ADGRB3 BS_58YXHGAJ ARRIBA other 4 3 high [INTRACHROMOSOMAL[chr6:91.74Mb]],inversion AGPAT4 NA ADGRB3 NA NA NA NA NA NA +6:143061066 6:143507424 AIG1--FUCA2 BS_58YXHGAJ ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr6:0.15Mb]],inversion AIG1 NA FUCA2 NA NA NA NA NA NA +6:13294796 6:53913854 AL008729.1--LRRC1 BS_58YXHGAJ ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr6:40.50Mb]],inversion AL008729.1 NA LRRC1 NA NA NA NA NA NA +6:13295275 6:53913854 AL008729.1--LRRC1 BS_58YXHGAJ ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr6:40.50Mb]],inversion AL008729.1 NA LRRC1 NA NA NA NA NA NA +6:145815431 6:170426566 AL356599.1--AL008628.1(7241)/PSMB1(108551) BS_58YXHGAJ ARRIBA other 1 0 low [],inversion AL356599.1 NA AL008628.1 PSMB1 NA NA NA NA NA +6:58043527 6:130016226 AL445250.1--L3MBTL3 BS_58YXHGAJ STARFUSION other 5 2 NA [INTRACHROMOSOMAL[chr6:71.58Mb]] AL445250.1 NA L3MBTL3 NA NA TranscriptionFactor NA NA NA +6:58043527 6:130016226 AL445250.1--L3MBTL3 BS_58YXHGAJ ARRIBA other 5 2 high [INTRACHROMOSOMAL[chr6:71.58Mb]],deletion AL445250.1 NA L3MBTL3 NA NA TranscriptionFactor NA NA NA +6:97828206 6:108491453 AL589740.1--AFG1L BS_58YXHGAJ ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr6:9.90Mb]],inversion/3'-3' AL589740.1 NA AFG1L NA NA NA NA NA NA +6:156829421 6:157325847 ARID1B--AL390955.2(1370)/AL390955.1(40143) BS_58YXHGAJ ARRIBA frameshift 31 8 high [],inversion ARID1B NA AL390955.2 AL390955.1 CosmicCensus, Oncogene NA NA NA NA +6:156829421 6:157318919 ARID1B--TMEM242 BS_58YXHGAJ STARFUSION in-frame 18 7 NA [CCLE,INTRACHROMOSOMAL[chr6:0.08Mb],LOCAL_INVERSION:+:-:[78607]] ARID1B NA TMEM242 NA CosmicCensus, Oncogene NA NA NA NA +6:156829421 6:157292999 ARID1B--TMEM242 BS_58YXHGAJ STARFUSION in-frame 4 7 NA [CCLE,INTRACHROMOSOMAL[chr6:0.08Mb],LOCAL_INVERSION:+:-:[78607]] ARID1B NA TMEM242 NA CosmicCensus, Oncogene NA NA NA NA +6:156829421 6:157322805 ARID1B--TMEM242 BS_58YXHGAJ STARFUSION frameshift 4 7 NA [CCLE,INTRACHROMOSOMAL[chr6:0.08Mb],LOCAL_INVERSION:+:-:[78607]] ARID1B NA TMEM242 NA CosmicCensus, Oncogene NA NA NA NA +6:156829421 6:157318919 ARID1B--TMEM242 BS_58YXHGAJ ARRIBA in-frame 18 6 high [CCLE,INTRACHROMOSOMAL[chr6:0.08Mb],LOCAL_INVERSION:+:-:[78607]],inversion ARID1B NA TMEM242 NA CosmicCensus, Oncogene NA NA NA NA +6:156829421 6:157322805 ARID1B--TMEM242 BS_58YXHGAJ ARRIBA frameshift 4 7 high [CCLE,INTRACHROMOSOMAL[chr6:0.08Mb],LOCAL_INVERSION:+:-:[78607]],inversion ARID1B NA TMEM242 NA CosmicCensus, Oncogene NA NA NA NA +6:156829421 6:157292999 ARID1B--TMEM242 BS_58YXHGAJ ARRIBA in-frame 4 4 high [CCLE,INTRACHROMOSOMAL[chr6:0.08Mb],LOCAL_INVERSION:+:-:[78607]],inversion ARID1B NA TMEM242 NA CosmicCensus, Oncogene NA NA NA NA +6:107098551 6:122781093 BEND3--FABP7 BS_58YXHGAJ ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr6:15.66Mb]],inversion BEND3 NA FABP7 NA NA NA NA NA NA +6:107098551 6:138980769 BEND3--REPS1 BS_58YXHGAJ ARRIBA frameshift 8 10 high [INTRACHROMOSOMAL[chr6:31.79Mb]],inversion/5'-5' BEND3 NA REPS1 NA NA NA NA NA NA +6:8062534 6:15410224 BLOC1S5--JARID2 BS_58YXHGAJ STARFUSION frameshift 5 2 NA [INTRACHROMOSOMAL[chr6:7.18Mb]] BLOC1S5 NA JARID2 NA NA NA NA NA NA +6:8062534 6:15410224 BLOC1S5--JARID2 BS_58YXHGAJ ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr6:7.18Mb]],inversion BLOC1S5 NA JARID2 NA NA NA NA NA NA +6:8062534 6:15410224 BLOC1S5-TXNDC5--JARID2 BS_58YXHGAJ ARRIBA other 5 2 high [],inversion BLOC1S5-TXNDC5 NA JARID2 NA NA NA NA NA NA +6:20535394 6:57225717 CDKAL1--RAB23(3403)/PRIM2(89088) BS_58YXHGAJ ARRIBA other 5 0 high [],inversion CDKAL1 NA RAB23 PRIM2 NA NA NA NA NA +2:231781883 3:33517174 COPS7B--CLASP2 BS_58YXHGAJ ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr2--chr3]],translocation COPS7B NA CLASP2 NA NA NA NA NA NA +6:56843055 6:141026939 DST--AL357080.1(6913)/AL355596.1(420072) BS_58YXHGAJ ARRIBA frameshift 2 4 high [],inversion DST NA AL357080.1 AL355596.1 Oncogene NA NA NA NA +16:23524209 1:181766543 EARS2--CACNA1E BS_58YXHGAJ ARRIBA other 2 2 medium [INTERCHROMOSOMAL[chr16--chr1]],translocation EARS2 NA CACNA1E NA NA NA NA NA NA +16:23525244 1:181766546 EARS2--CACNA1E BS_58YXHGAJ ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr16--chr1]],translocation EARS2 NA CACNA1E NA NA NA NA NA NA +6:8062534 6:15410224 EEF1E1-BLOC1S5--JARID2 BS_58YXHGAJ STARFUSION other 5 2 NA [INTRACHROMOSOMAL[chr6:7.14Mb]] EEF1E1-BLOC1S5 NA JARID2 NA NA NA NA NA NA +6:8062534 6:15410224 EEF1E1-BLOC1S5--JARID2 BS_58YXHGAJ ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr6:7.14Mb]],inversion EEF1E1-BLOC1S5 NA JARID2 NA NA NA NA NA NA +6:158818082 6:89683969 EZR--MDN1 BS_58YXHGAJ ARRIBA frameshift 43 14 high [INTRACHROMOSOMAL[chr6:68.95Mb]],inversion/5'-5' EZR NA MDN1 NA CosmicCensus NA NA NA NA +6:5545340 6:80341567 FARS2--BCKDHB BS_58YXHGAJ ARRIBA frameshift 14 7 high [INTRACHROMOSOMAL[chr6:74.34Mb]],inversion/3'-3' FARS2 NA BCKDHB NA NA NA NA NA NA +6:108561829 6:97969406 FOXO3--AL589740.1 BS_58YXHGAJ STARFUSION other 8 4 NA [INTRACHROMOSOMAL[chr6:10.16Mb]] FOXO3 NA AL589740.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +6:108561829 6:98099186 FOXO3--AL589740.1 BS_58YXHGAJ STARFUSION other 3 4 NA [INTRACHROMOSOMAL[chr6:10.16Mb]] FOXO3 NA AL589740.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +6:108561829 6:97969406 FOXO3--AL589740.1 BS_58YXHGAJ ARRIBA frameshift 8 4 high [INTRACHROMOSOMAL[chr6:10.16Mb]],duplication FOXO3 NA AL589740.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +6:108561829 6:98099186 FOXO3--AL589740.1 BS_58YXHGAJ ARRIBA frameshift 3 4 high [INTRACHROMOSOMAL[chr6:10.16Mb]],duplication FOXO3 NA AL589740.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +6:108561829 6:98275164 FOXO3--AL589740.1 BS_58YXHGAJ ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr6:10.16Mb]],duplication FOXO3 NA AL589740.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +6:96016212 6:145275164 FUT9--UTRN(422130)/EPM2A(107371) BS_58YXHGAJ ARRIBA other 19 1 high [],deletion FUT9 NA UTRN EPM2A NA NA NA NA NA +16:23519587 1:181766546 GGA2--CACNA1E BS_58YXHGAJ ARRIBA frameshift 1 2 high [INTERCHROMOSOMAL[chr16--chr1]],translocation GGA2 NA CACNA1E NA NA NA NA NA NA +6:101928632 6:122982028 GRIK2--ATP5LP2(122040)/CLVS2(13943) BS_58YXHGAJ ARRIBA frameshift 4 2 high [],deletion GRIK2 NA ATP5LP2 CLVS2 NA NA NA NA NA +6:101928632 6:94627399 GRIK2--MTCYBP36(180220)/CYCSP17(876783) BS_58YXHGAJ ARRIBA frameshift 3 0 high [],inversion GRIK2 NA MTCYBP36 CYCSP17 NA NA NA NA NA +6:113996060 6:131145285 HDAC2-AS2--AKAP7 BS_58YXHGAJ STARFUSION other 6 1 NA [INTRACHROMOSOMAL[chr6:16.66Mb]] HDAC2-AS2 NA AKAP7 NA NA NA NA NA NA +6:113996060 6:131145285 HDAC2-AS2--AKAP7 BS_58YXHGAJ ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr6:16.66Mb]],deletion HDAC2-AS2 NA AKAP7 NA NA NA NA NA NA +6:142901664 6:88145337 HIVEP2--CNR1 BS_58YXHGAJ ARRIBA other 1 3 high [INTRACHROMOSOMAL[chr6:54.59Mb]],deletion HIVEP2 NA CNR1 NA TranscriptionFactor NA NA NA NA +6:142945944 6:88164294 HIVEP2--CNR1 BS_58YXHGAJ ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr6:54.59Mb]],deletion HIVEP2 NA CNR1 NA TranscriptionFactor NA NA NA NA +6:142945944 6:88145337 HIVEP2--CNR1 BS_58YXHGAJ ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr6:54.59Mb]],deletion HIVEP2 NA CNR1 NA TranscriptionFactor NA NA NA NA +6:15468718 6:7374131 JARID2--CAGE1 BS_58YXHGAJ STARFUSION in-frame 12 4 NA [INTRACHROMOSOMAL[chr6:7.86Mb]] JARID2 NA CAGE1 NA NA Oncogene NA NA NA +6:15468718 6:7374131 JARID2--CAGE1 BS_58YXHGAJ ARRIBA frameshift 12 4 high [INTRACHROMOSOMAL[chr6:7.86Mb]],inversion JARID2 NA CAGE1 NA NA Oncogene NA NA NA +6:15374252 6:147126790 JARID2--LUADT1 BS_58YXHGAJ ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr6:131.64Mb]],deletion JARID2 NA LUADT1 NA NA NA NA NA NA +6:15374252 6:147126790 JARID2--STXBP5-AS1 BS_58YXHGAJ ARRIBA frameshift 19 4 high [INTRACHROMOSOMAL[chr6:131.32Mb]],deletion/5'-5' JARID2 NA STXBP5-AS1 NA NA NA NA NA NA +6:96925026 6:3324002 KLHL32--SLC22A23 BS_58YXHGAJ STARFUSION other 6 6 NA [INTRACHROMOSOMAL[chr6:93.47Mb]] KLHL32 NA SLC22A23 NA NA Oncogene NA NA NA +6:96925026 6:3298218 KLHL32--SLC22A23 BS_58YXHGAJ STARFUSION other 1 6 NA [INTRACHROMOSOMAL[chr6:93.47Mb]] KLHL32 NA SLC22A23 NA NA Oncogene NA NA NA +6:96925026 6:3324002 KLHL32--SLC22A23 BS_58YXHGAJ ARRIBA other 6 5 high [INTRACHROMOSOMAL[chr6:93.47Mb]],inversion KLHL32 NA SLC22A23 NA NA Oncogene NA NA NA +6:96925026 6:3298218 KLHL32--SLC22A23 BS_58YXHGAJ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr6:93.47Mb]],inversion KLHL32 NA SLC22A23 NA NA Oncogene NA NA NA +6:112216368 6:132905543 LAMA4--AL137783.1(11724)/RPL23AP46(92008) BS_58YXHGAJ ARRIBA frameshift 7 0 high [],duplication LAMA4 NA AL137783.1 RPL23AP46 NA NA NA NA NA +6:112216368 6:132949096 LAMA4--AL137783.1(55277)/RPL23AP46(48455) BS_58YXHGAJ ARRIBA frameshift 12 6 high [],duplication LAMA4 NA AL137783.1 RPL23AP46 NA NA NA NA NA +6:104941012 6:87569590 LIN28B--RARS2 BS_58YXHGAJ ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr6:17.35Mb]],inversion LIN28B NA RARS2 NA TranscriptionFactor NA NA NA NA +9:28475940 9:27455748 LINGO2--MOB3B BS_58YXHGAJ STARFUSION other 8 2 NA [INTRACHROMOSOMAL[chr9:0.42Mb]] LINGO2 NA MOB3B NA NA NA NA NA NA +9:28475940 9:27455748 LINGO2--MOB3B BS_58YXHGAJ ARRIBA other 8 1 high [INTRACHROMOSOMAL[chr9:0.42Mb]],deletion LINGO2 NA MOB3B NA NA NA NA NA NA +6:53908870 6:19929862 LRRC1--ID4(89178)/AL008627.1(112593) BS_58YXHGAJ ARRIBA other 4 2 medium [],duplication LRRC1 NA ID4 AL008627.1 NA TumorSuppressorGene, Oncogene NA NA NA +6:5260648 6:70732378 LYRM4--SMAP1 BS_58YXHGAJ STARFUSION frameshift 11 1 NA [INTRACHROMOSOMAL[chr6:65.41Mb]] LYRM4 NA SMAP1 NA NA Oncogene NA NA NA +6:5260648 6:70732378 LYRM4--SMAP1 BS_58YXHGAJ ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr6:65.41Mb]],inversion LYRM4 NA SMAP1 NA NA Oncogene NA NA NA +6:89683969 6:158818082 MDN1--EZR-AS1 BS_58YXHGAJ STARFUSION other 15 12 NA [INTRACHROMOSOMAL[chr6:69.00Mb]] MDN1 NA EZR-AS1 NA NA NA NA NA NA +6:75867105 6:36619843 MYO6--SRSF3(14243)/MIR3925(2593) BS_58YXHGAJ ARRIBA frameshift 2 0 medium [],inversion MYO6 NA SRSF3 MIR3925 NA CosmicCensus, Oncogene NA NA NA +6:34392264 6:47612473 NUDT3--CD2AP BS_58YXHGAJ STARFUSION frameshift 13 8 NA [INTRACHROMOSOMAL[chr6:13.09Mb]] NUDT3 NA CD2AP NA NA NA NA NA NA +6:34392264 6:47624186 NUDT3--CD2AP BS_58YXHGAJ STARFUSION in-frame 2 8 NA [INTRACHROMOSOMAL[chr6:13.09Mb]] NUDT3 NA CD2AP NA NA NA NA NA NA +6:34392264 6:47612473 NUDT3--CD2AP BS_58YXHGAJ ARRIBA frameshift 11 7 high [INTRACHROMOSOMAL[chr6:13.09Mb]],inversion NUDT3 NA CD2AP NA NA NA NA NA NA +6:34392264 6:47624186 NUDT3--CD2AP BS_58YXHGAJ ARRIBA in-frame 2 4 high [INTRACHROMOSOMAL[chr6:13.09Mb]],inversion NUDT3 NA CD2AP NA NA NA NA NA NA +X:68432867 3:98982464 OPHN1--LINC00973 BS_58YXHGAJ ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chrX--chr3]],translocation OPHN1 NA LINC00973 NA NA NA NA NA NA +6:13289194 6:70674112 PHACTR1--SMAP1 BS_58YXHGAJ ARRIBA other 3 5 medium [INTRACHROMOSOMAL[chr6:57.38Mb]],inversion/3'-3' PHACTR1 NA SMAP1 NA NA Oncogene NA NA NA +6:35347150 6:73644603 PPARD--SLC17A5 BS_58YXHGAJ STARFUSION in-frame 5 6 NA [INTRACHROMOSOMAL[chr6:38.17Mb]] PPARD NA SLC17A5 NA Oncogene, TranscriptionFactor NA NA NA NA +6:35347150 6:73641924 PPARD--SLC17A5 BS_58YXHGAJ STARFUSION frameshift 2 6 NA [INTRACHROMOSOMAL[chr6:38.17Mb]] PPARD NA SLC17A5 NA Oncogene, TranscriptionFactor NA NA NA NA +6:35347150 6:73644603 PPARD--SLC17A5 BS_58YXHGAJ ARRIBA in-frame 5 6 high [INTRACHROMOSOMAL[chr6:38.17Mb]],inversion PPARD NA SLC17A5 NA Oncogene, TranscriptionFactor NA NA NA NA +6:35347150 6:73641924 PPARD--SLC17A5 BS_58YXHGAJ ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr6:38.17Mb]],inversion PPARD NA SLC17A5 NA Oncogene, TranscriptionFactor NA NA NA NA +6:138982051 6:122781093 REPS1--FABP7 BS_58YXHGAJ ARRIBA other 40 13 high [INTRACHROMOSOMAL[chr6:16.12Mb]],duplication/3'-3' REPS1 NA FABP7 NA NA NA NA NA NA +6:72284118 6:44679246 RIMS1--AL136140.2(125965)/SUPT3H(130071) BS_58YXHGAJ ARRIBA frameshift 1 3 high [],inversion RIMS1 NA AL136140.2 SUPT3H NA NA NA NA NA +6:13214216 6:70668141 RNU1-11P--SMAP1 BS_58YXHGAJ ARRIBA other 6 1 medium [INTRACHROMOSOMAL[chr6:57.45Mb]],inversion/3'-3' RNU1-11P NA SMAP1 NA NA Oncogene NA NA NA +6:4999809 6:96203015 RPP40--FUT9 BS_58YXHGAJ ARRIBA frameshift 10 7 high [INTRACHROMOSOMAL[chr6:91.01Mb]],duplication/5'-5' RPP40 NA FUT9 NA NA NA NA NA NA +6:166538668 6:67351923 RPS6KA2--SNORD65(141443)/AL365503.1(104423) BS_58YXHGAJ ARRIBA frameshift 31 10 high [],inversion RPS6KA2 NA SNORD65 AL365503.1 TumorSuppressorGene, Kinase NA NA NA NA +6:75602576 6:28449306 SENP6--COX11P1(1499)/Z98745.1(6342) BS_58YXHGAJ ARRIBA frameshift 10 3 high [],inversion SENP6 NA COX11P1 Z98745.1 NA NA NA NA NA +6:75602576 6:28426405 SENP6--RNU2-45P(15949)/ZSCAN23(5525) BS_58YXHGAJ ARRIBA frameshift 3 0 medium [],inversion SENP6 NA RNU2-45P ZSCAN23 NA NA NA TranscriptionFactor NA +6:75602576 6:28477890 SENP6--Z98745.1(21749)/GPX6(25406) BS_58YXHGAJ ARRIBA frameshift 4 1 high [],inversion SENP6 NA Z98745.1 GPX6 NA NA NA NA NA +6:75602576 6:28435607 SENP6--ZSCAN23 BS_58YXHGAJ ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr6:47.16Mb]],inversion SENP6 NA ZSCAN23 NA NA TranscriptionFactor NA NA NA +6:158143056 6:108542096 SERAC1--AFG1L(15300)/AL391646.1(8922) BS_58YXHGAJ ARRIBA frameshift 2 0 medium [],inversion SERAC1 NA AFG1L AL391646.1 NA NA NA NA NA +6:122471699 6:140904857 SERINC1--AL035446.1 BS_58YXHGAJ STARFUSION other 16 4 NA [INTRACHROMOSOMAL[chr6:18.37Mb]] SERINC1 NA AL035446.1 NA NA NA NA NA NA +6:122471699 6:140846304 SERINC1--AL035446.1 BS_58YXHGAJ STARFUSION other 4 4 NA [INTRACHROMOSOMAL[chr6:18.37Mb]] SERINC1 NA AL035446.1 NA NA NA NA NA NA +6:122471699 6:140846304 SERINC1--AL035446.1 BS_58YXHGAJ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:18.37Mb]],duplication SERINC1 NA AL035446.1 NA NA NA NA NA NA +6:122471699 6:140852924 SERINC1--AL035446.1 BS_58YXHGAJ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:18.37Mb]],duplication SERINC1 NA AL035446.1 NA NA NA NA NA NA +6:122471699 6:140904857 SERINC1--AL035446.1(51933)/AL357084.1(17600) BS_58YXHGAJ ARRIBA frameshift 8 2 high [],duplication SERINC1 NA AL035446.1 AL357084.1 NA NA NA NA NA +6:117907899 6:77073214 SLC35F1--AL590426.2(297354)/AL365222.1(270343) BS_58YXHGAJ ARRIBA frameshift 3 0 high [],duplication SLC35F1 NA AL590426.2 AL365222.1 NA NA NA NA NA +6:70668141 6:13281553 SMAP1--AL008729.1 BS_58YXHGAJ STARFUSION other 13 5 NA [INTRACHROMOSOMAL[chr6:57.37Mb]] SMAP1 NA AL008729.1 NA Oncogene NA NA NA NA +6:70668141 6:13281553 SMAP1--AL008729.1 BS_58YXHGAJ ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr6:57.37Mb]],inversion SMAP1 NA AL008729.1 NA Oncogene NA NA NA NA +6:70668141 6:13267835 SMAP1--AL008729.1 BS_58YXHGAJ ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr6:57.37Mb]],inversion SMAP1 NA AL008729.1 NA Oncogene NA NA NA NA +6:70668716 6:13267835 SMAP1--AL008729.1 BS_58YXHGAJ ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr6:57.37Mb]],inversion SMAP1 NA AL008729.1 NA Oncogene NA NA NA NA +6:70668141 6:13281553 SMAP1--TBC1D7 BS_58YXHGAJ STARFUSION other 13 5 NA [INTRACHROMOSOMAL[chr6:57.34Mb]] SMAP1 NA TBC1D7 NA Oncogene NA NA NA NA +6:70668141 6:13281553 SMAP1--TBC1D7 BS_58YXHGAJ ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr6:57.34Mb]],inversion SMAP1 NA TBC1D7 NA Oncogene NA NA NA NA +6:70668141 6:13267835 SMAP1--TBC1D7 BS_58YXHGAJ ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr6:57.34Mb]],inversion SMAP1 NA TBC1D7 NA Oncogene NA NA NA NA +6:70668716 6:13267835 SMAP1--TBC1D7 BS_58YXHGAJ ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr6:57.34Mb]],inversion SMAP1 NA TBC1D7 NA Oncogene NA NA NA NA +6:11094389 6:143136835 SMIM13--AIG1 BS_58YXHGAJ ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr6:131.92Mb]],deletion SMIM13 NA AIG1 NA NA NA NA NA NA +6:107589865 6:105871384 SOBP--Z97206.1(203386)/RN7SKP211(32989) BS_58YXHGAJ ARRIBA other 26 17 medium [],duplication SOBP NA Z97206.1 RN7SKP211 NA NA NA NA NA +6:147301644 6:22324235 STXBP5--CASC15 BS_58YXHGAJ ARRIBA other 5 5 medium [INTRACHROMOSOMAL[chr6:124.84Mb]],inversion/3'-3' STXBP5 NA CASC15 NA NA NA NA NA NA +6:13294796 6:53913854 TBC1D7--LRRC1 BS_58YXHGAJ ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr6:40.47Mb]],inversion TBC1D7 NA LRRC1 NA NA NA NA NA NA +6:13305062 6:53913854 TBC1D7--LRRC1 BS_58YXHGAJ ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr6:40.47Mb]],inversion TBC1D7 NA LRRC1 NA NA NA NA NA NA +6:133984671 6:135058289 TBPL1--AL353596.1 BS_58YXHGAJ ARRIBA frameshift 11 3 high [INTRACHROMOSOMAL[chr6:1.06Mb]],inversion/3'-3' TBPL1 NA AL353596.1 NA TranscriptionFactor NA NA NA NA +6:133984671 6:135058289 TBPL1--HBS1L BS_58YXHGAJ ARRIBA frameshift 11 3 high [INTRACHROMOSOMAL[chr6:0.97Mb]],inversion TBPL1 NA HBS1L NA TranscriptionFactor NA NA NA NA +6:133984671 6:135050647 TBPL1--HBS1L BS_58YXHGAJ ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr6:0.97Mb]],inversion TBPL1 NA HBS1L NA TranscriptionFactor NA NA NA NA +6:130385236 6:11735683 TMEM200A--ADTRP BS_58YXHGAJ STARFUSION other 7 2 NA [INTRACHROMOSOMAL[chr6:118.56Mb]] TMEM200A NA ADTRP NA NA NA NA NA NA +6:130385236 6:11735683 TMEM200A--ADTRP BS_58YXHGAJ ARRIBA other 6 2 high [INTRACHROMOSOMAL[chr6:118.56Mb]],inversion TMEM200A NA ADTRP NA NA NA NA NA NA +6:130366524 6:11735683 TMEM200A--ADTRP BS_58YXHGAJ ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr6:118.56Mb]],inversion TMEM200A NA ADTRP NA NA NA NA NA NA +6:43263350 6:170438639 TTBK1--AL008628.1(19314)/PSMB1(96478) BS_58YXHGAJ ARRIBA frameshift 2 3 high [],deletion TTBK1 NA AL008628.1 PSMB1 Kinase, Kinase NA NA NA NA +6:43275127 6:114067609 TTBK1--HDAC2-AS2 BS_58YXHGAJ ARRIBA other 9 8 medium [INTRACHROMOSOMAL[chr6:70.68Mb]],deletion TTBK1 NA HDAC2-AS2 NA Kinase, Kinase NA NA NA NA +6:43275127 6:114067609 TTBK1--HS3ST5 BS_58YXHGAJ ARRIBA other 9 8 medium [INTRACHROMOSOMAL[chr6:70.77Mb]],deletion/5'-5' TTBK1 NA HS3ST5 NA Kinase, Kinase NA NA NA NA +6:89338205 6:68956024 UBE2J1--ADGRB3 BS_58YXHGAJ STARFUSION frameshift 13 2 NA [INTRACHROMOSOMAL[chr6:19.94Mb]] UBE2J1 NA ADGRB3 NA NA NA NA NA NA +6:89338205 6:68956024 UBE2J1--ADGRB3 BS_58YXHGAJ ARRIBA frameshift 12 2 high [INTRACHROMOSOMAL[chr6:19.94Mb]],inversion UBE2J1 NA ADGRB3 NA NA NA NA NA NA +20:31968759 8:142763236 XKR7--AC083841.1 BS_58YXHGAJ ARRIBA frameshift 5 1 high [INTERCHROMOSOMAL[chr20--chr8]],translocation XKR7 NA AC083841.1 NA NA NA NA NA NA +6:28498629 6:47610375 Z98745.1(42488)/GPX6(4667)--CD2AP BS_58YXHGAJ ARRIBA other 1 2 medium [],duplication Z98745.1 GPX6 CD2AP NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_5VPM0F36 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_5VPM0F36 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +9:96116246 12:111781918 AL449403.2--AC002996.1 BS_5VPM0F36 ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr9--chr12]],translocation AL449403.2 NA AC002996.1 NA NA NA NA NA NA +9:96116246 12:111781918 AL449403.2--ALDH2 BS_5VPM0F36 ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr9--chr12]],translocation AL449403.2 NA ALDH2 NA NA CosmicCensus, Oncogene NA NA NA +12:45050525 12:57535845 DBX2--DCTN2 BS_5VPM0F36 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr12:12.48Mb]],duplication DBX2 NA DCTN2 NA TranscriptionFactor NA NA NA NA +9:112487118 9:85881356 KIAA1958--AL353743.1(31814)/PHBP7(17547) BS_5VPM0F36 ARRIBA other 2 0 medium [],duplication KIAA1958 NA AL353743.1 PHBP7 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_5VPM0F36 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +12:57230892 12:49202118 SHMT2--TUBA1C BS_5VPM0F36 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr12:7.95Mb]],inversion/3'-3' SHMT2 NA TUBA1C NA NA NA NA NA NA +12:62260503 12:51912470 USP15--ACVRL1 BS_5VPM0F36 ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr12:10.34Mb]],duplication USP15 NA ACVRL1 NA Oncogene Kinase NA NA NA +12:62261005 12:51899671 USP15--ANKRD33(8007)/AC025259.2(894) BS_5VPM0F36 ARRIBA other 1 1 medium [],duplication USP15 NA ANKRD33 AC025259.2 Oncogene NA NA NA NA +12:64410095 12:63153988 XPOT--AC135584.1 BS_5VPM0F36 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr12:1.25Mb]],inversion/3'-3' XPOT NA AC135584.1 NA NA NA NA NA NA +7:152367261 7:55773178 AC104692.1--PSPHP1 BS_685DACMS STARFUSION other 25 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +12:132945621 12:132945797 CHFR--CHFR BS_685DACMS ARRIBA frameshift 11 0 low [SELFIE,INTRACHROMOSOMAL[chr12:0.13Mb]],duplication/non-canonical_splicing CHFR NA CHFR NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA +4:3029409 21:33439297 GRK4--TMEM50B BS_685DACMS ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr4--chr21]],translocation GRK4 NA TMEM50B NA Kinase NA NA NA NA +10:58398180 10:58400276 TFAM--TFAM(1055)/BICC1(112864) BS_685DACMS ARRIBA other 2 1 medium [],duplication TFAM NA TFAM BICC1 NA NA NA NA NA +19:54426768 19:53648230 TTYH1--DPRX(11221)/RNU6-698P(5455) BS_685DACMS ARRIBA frameshift 8 1 medium [],duplication TTYH1 NA DPRX RNU6-698P Oncogene TranscriptionFactor NA NA NA +7:87541357 7:115478779 ABCB1--LINC01392(247424)/AC073901.1(24588) BS_68KX6A42 ARRIBA frameshift 18 6 high [],duplication ABCB1 NA LINC01392 AC073901.1 Oncogene NA NA NA NA +7:76551522 7:107673278 AC004980.1--SLC26A4 BS_68KX6A42 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:31.03Mb]],inversion/3'-3' AC004980.1 NA SLC26A4 NA NA NA NA NA NA +7:25595149 7:76060226 AC005165.1--MDH2 BS_68KX6A42 ARRIBA other 15 2 medium [INTRACHROMOSOMAL[chr7:50.30Mb]],deletion/3'-3' AC005165.1 NA MDH2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_68KX6A42 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_68KX6A42 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +15:92924552 15:78054187 AC013394.1--TBC1D2B BS_68KX6A42 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr15:14.81Mb]],inversion AC013394.1 NA TBC1D2B NA NA NA NA NA NA +3:115262930 3:115676013 AC046136.1--GAP43 BS_68KX6A42 ARRIBA other 2 1 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA +7:54076391 7:111413945 AC073521.1(128647)/HPVC1(124833)--IMMP2L BS_68KX6A42 ARRIBA other 3 1 medium [],inversion AC073521.1 HPVC1 IMMP2L NA NA NA NA NA NA +7:128533730 7:38436388 AC090114.3--AMPH BS_68KX6A42 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr7:89.90Mb]],inversion AC090114.3 NA AMPH NA NA NA NA NA NA +15:93373585 15:92363576 AC091078.1--AC116903.2(32539)/ST8SIA2(30252) BS_68KX6A42 ARRIBA other 6 5 high [],duplication AC091078.1 NA AC116903.2 ST8SIA2 NA NA NA NA NA +15:93322346 15:92997253 AC091078.1--CHD2 BS_68KX6A42 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.28Mb]],duplication AC091078.1 NA CHD2 NA NA CosmicCensus, Oncogene NA NA NA +15:93498757 15:89445794 AC091078.1--MIR9-3HG(47307)/RHCG(25604) BS_68KX6A42 ARRIBA other 17 0 medium [],inversion AC091078.1 NA MIR9-3HG RHCG NA NA NA Oncogene NA +5:8244037 5:10377798 AC091912.1(86249)/LINC02226(89444)--MARCH6 BS_68KX6A42 ARRIBA other 2 1 high [],deletion AC091912.1 LINC02226 MARCH6 NA NA NA NA NA NA +15:68218536 5:10683571 AC107871.1--DAP BS_68KX6A42 ARRIBA frameshift 6 3 high [INTERCHROMOSOMAL[chr15--chr5]],translocation AC107871.1 NA DAP NA NA NA NA NA NA +15:68218536 5:10748271 AC107871.1--DAP BS_68KX6A42 ARRIBA frameshift 1 3 high [INTERCHROMOSOMAL[chr15--chr5]],translocation AC107871.1 NA DAP NA NA NA NA NA NA +1:145233113 7:104530204 AC241585.1--LHFPL3 BS_68KX6A42 ARRIBA other 10 0 low [INTERCHROMOSOMAL[chr1--chr7]],translocation AC241585.1 NA LHFPL3 NA NA NA NA NA NA +7:152816588 7:80828745 ACTR3B--SEMA3C BS_68KX6A42 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr7:71.84Mb]],inversion ACTR3B NA SEMA3C NA NA NA NA NA NA +7:152816588 7:80905916 ACTR3B--SEMA3C BS_68KX6A42 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:71.84Mb]],inversion ACTR3B NA SEMA3C NA NA NA NA NA NA +7:140681137 7:152537645 ADCK2--LINC01003(72096)/AC104843.2(52996) BS_68KX6A42 ARRIBA frameshift 2 3 medium [],deletion ADCK2 NA LINC01003 AC104843.2 Kinase NA NA NA NA +7:151087072 7:100485228 AGAP3--NYAP1 BS_68KX6A42 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:50.59Mb]],duplication AGAP3 NA NYAP1 NA NA NA NA NA NA +7:151087072 7:141404576 AGAP3--TMEM178B BS_68KX6A42 ARRIBA frameshift 8 1 high [INTRACHROMOSOMAL[chr7:9.61Mb]],inversion/3'-3' AGAP3 NA TMEM178B NA NA NA NA NA NA +7:141598462 7:10839810 AGK--MGC4859(59866)/Y_RNA(62168) BS_68KX6A42 ARRIBA other 72 30 high [],inversion AGK NA MGC4859 Y_RNA NA NA NA NA NA +7:141601280 7:4822554 AGK--RADIL BS_68KX6A42 ARRIBA frameshift 13 2 high [INTRACHROMOSOMAL[chr7:136.67Mb]],inversion AGK NA RADIL NA NA NA NA NA NA +7:129368551 7:14308884 AHCYL2--DGKB BS_68KX6A42 ARRIBA frameshift 1 1 high [INTRACHROMOSOMAL[chr7:114.25Mb]],duplication/5'-5' AHCYL2 NA DGKB NA NA Kinase NA NA NA +7:38417825 7:117560792 AMPH--AC000111.1 BS_68KX6A42 ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chr7:78.93Mb]],duplication AMPH NA AC000111.1 NA NA NA NA NA NA +7:38422421 7:117560792 AMPH--AC000111.1 BS_68KX6A42 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:78.93Mb]],duplication AMPH NA AC000111.1 NA NA NA NA NA NA +7:38631283 7:35419625 AMPH--AC009531.1(159896)/AC007652.1(76396) BS_68KX6A42 ARRIBA frameshift 6 2 high [],deletion AMPH NA AC009531.1 AC007652.1 NA NA NA NA NA +7:38422421 7:117537897 AMPH--CFTR BS_68KX6A42 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr7:78.83Mb]],duplication/5'-5' AMPH NA CFTR NA NA TumorSuppressorGene NA NA NA +7:38631283 7:83490274 AMPH--SEMA3E BS_68KX6A42 ARRIBA frameshift 13 3 high [INTRACHROMOSOMAL[chr7:44.73Mb]],duplication AMPH NA SEMA3E NA NA NA NA NA NA +5:10564833 5:8173196 ANKRD33B--AC091912.1(15408)/LINC02226(160285) BS_68KX6A42 ARRIBA frameshift 3 0 high [],duplication ANKRD33B NA AC091912.1 LINC02226 NA NA NA NA NA +5:10564833 5:10748271 ANKRD33B--DAP BS_68KX6A42 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr5:0.02Mb],LOCAL_INVERSION:+:-:[21414]],inversion ANKRD33B NA DAP NA NA NA NA NA NA +5:10618462 5:10748271 ANKRD33B--DAP BS_68KX6A42 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr5:0.02Mb],LOCAL_INVERSION:+:-:[21414]],inversion ANKRD33B NA DAP NA NA NA NA NA NA +5:10618462 5:10683571 ANKRD33B--DAP BS_68KX6A42 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr5:0.02Mb],LOCAL_INVERSION:+:-:[21414]],inversion ANKRD33B NA DAP NA NA NA NA NA NA +5:10618462 15:92573304 ANKRD33B--LINC00930(1262)/AC091544.2(7525) BS_68KX6A42 ARRIBA frameshift 1 3 high [],translocation ANKRD33B NA LINC00930 AC091544.2 NA NA NA NA NA +7:77695896 7:77757346 APTR--RSBN1L BS_68KX6A42 ARRIBA other 4 0 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_INVERSION:-:+:[178]],duplication/5'-5' APTR NA RSBN1L NA NA NA NA NA NA +7:149878790 7:69272398 ATP6V0E2--AC092100.1 BS_68KX6A42 STARFUSION other 15 9 NA [INTRACHROMOSOMAL[chr7:80.44Mb]] ATP6V0E2 NA AC092100.1 NA NA NA NA NA NA +7:149878790 7:69272398 ATP6V0E2--AC092100.1 BS_68KX6A42 ARRIBA frameshift 14 8 high [INTRACHROMOSOMAL[chr7:80.44Mb]],inversion ATP6V0E2 NA AC092100.1 NA NA NA NA NA NA +7:105788604 7:56021231 ATXN7L1--PSPH BS_68KX6A42 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:49.55Mb]],deletion ATXN7L1 NA PSPH NA NA NA NA NA NA +7:70698620 7:41299364 AUTS2--LINC01449(165857)/INHBA(367804) BS_68KX6A42 ARRIBA frameshift 14 1 high [],duplication AUTS2 NA LINC01449 INHBA NA NA NA NA NA +7:69599962 7:5652510 AUTS2--RNF216 BS_68KX6A42 STARFUSION in-frame 61 11 NA [INTRACHROMOSOMAL[chr7:63.82Mb]] AUTS2 NA RNF216 NA NA Oncogene NA NA NA +7:69599962 7:5652510 AUTS2--RNF216 BS_68KX6A42 ARRIBA in-frame 58 9 high [INTRACHROMOSOMAL[chr7:63.82Mb]],inversion AUTS2 NA RNF216 NA NA Oncogene NA NA NA +7:69599962 7:5641376 AUTS2--RNF216 BS_68KX6A42 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:63.82Mb]],inversion AUTS2 NA RNF216 NA NA Oncogene NA NA NA +7:70698620 7:6858058 AUTS2--UNC93B2 BS_68KX6A42 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr7:62.74Mb]],duplication/5'-5' AUTS2 NA UNC93B2 NA NA NA NA NA NA +7:70637927 7:149080717 AUTS2--ZNF786 BS_68KX6A42 ARRIBA other 2 5 high [INTRACHROMOSOMAL[chr7:78.28Mb]],duplication/3'-3' AUTS2 NA ZNF786 NA NA TranscriptionFactor NA NA NA +7:32495802 7:30025387 AVL9--AC007285.1 BS_68KX6A42 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:2.47Mb]],duplication AVL9 NA AC007285.1 NA NA NA NA NA NA +7:32495802 7:30008228 AVL9--AC007285.1 BS_68KX6A42 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:2.47Mb]],duplication AVL9 NA AC007285.1 NA NA NA NA NA NA +7:33534176 7:47821186 BBS9--PKD1L1 BS_68KX6A42 ARRIBA frameshift 2 0 low [ChimerKB,Cosmic,INTRACHROMOSOMAL[chr7:14.17Mb]],inversion BBS9 NA PKD1L1 NA NA NA NA NA NA +7:33177591 7:24547493 BBS9--RNU6-1103P(10055)/MPP6(25775) BS_68KX6A42 ARRIBA frameshift 4 3 high [],duplication BBS9 NA RNU6-1103P MPP6 NA NA NA NA NA +7:112939591 7:96016749 BMT2--DYNC1I1 BS_68KX6A42 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr7:16.71Mb]],deletion/5'-5' BMT2 NA DYNC1I1 NA NA NA NA NA NA +7:140924566 7:4740838 BRAF--FOXK1 BS_68KX6A42 ARRIBA frameshift 3 3 high [INTRACHROMOSOMAL[chr7:135.95Mb]],inversion BRAF NA FOXK1 NA Kinase, CosmicCensus, Oncogene, Kinase TranscriptionFactor NA NA NA +7:7182820 7:70595287 C1GALT1--AUTS2 BS_68KX6A42 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr7:62.35Mb]],inversion/3'-3' C1GALT1 NA AUTS2 NA NA NA NA NA NA +7:93574289 5:10595885 CALCR--ANKRD33B BS_68KX6A42 ARRIBA other 3 2 high [INTERCHROMOSOMAL[chr7--chr5]],translocation/5'-5' CALCR NA ANKRD33B NA Oncogene NA NA NA NA +7:72378228 7:158911550 CALN1--WDR60 BS_68KX6A42 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr7:86.41Mb]],inversion CALN1 NA WDR60 NA NA NA NA NA NA +7:116862650 7:87601078 CAPZA2--ABCB1 BS_68KX6A42 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr7:29.10Mb]],inversion CAPZA2 NA ABCB1 NA NA Oncogene NA NA TCGAFusion +7:116862650 7:87723049 CAPZA2--RUNDC3B BS_68KX6A42 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:28.98Mb]],inversion/3'-3' CAPZA2 NA RUNDC3B NA NA NA NA NA NA +7:128810366 7:152600639 CCDC136--RNA5SP250(7548)/AC104843.1(1574) BS_68KX6A42 ARRIBA frameshift 7 2 high [],inversion CCDC136 NA RNA5SP250 AC104843.1 TumorSuppressorGene NA NA NA NA +7:105880077 7:107672138 CDHR3--SLC26A4 BS_68KX6A42 STARFUSION other 138 63 NA [INTRACHROMOSOMAL[chr7:1.63Mb]] CDHR3 NA SLC26A4 NA NA NA NA NA NA +7:105879745 7:107672138 CDHR3--SLC26A4 BS_68KX6A42 STARFUSION other 76 63 NA [INTRACHROMOSOMAL[chr7:1.63Mb]] CDHR3 NA SLC26A4 NA NA NA NA NA NA +7:105880077 7:107672138 CDHR3--SLC26A4 BS_68KX6A42 ARRIBA other 129 55 high [INTRACHROMOSOMAL[chr7:1.63Mb]],deletion CDHR3 NA SLC26A4 NA NA NA NA NA NA +7:90726812 7:11719092 CDK14--THSD7A BS_68KX6A42 ARRIBA frameshift 19 9 high [INTRACHROMOSOMAL[chr7:78.63Mb]],duplication/5'-5' CDK14 NA THSD7A NA Kinase NA NA NA NA +7:90283056 7:71335550 CFAP69--GALNT17 BS_68KX6A42 ARRIBA in-frame 3 2 high [INTRACHROMOSOMAL[chr7:18.53Mb]],duplication CFAP69 NA GALNT17 NA NA NA NA NA NA +7:90255482 7:71335550 CFAP69--GALNT17 BS_68KX6A42 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:18.53Mb]],duplication CFAP69 NA GALNT17 NA NA NA NA NA NA +15:92901299 15:93496234 CHD2--AC091078.1 BS_68KX6A42 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr15:0.28Mb]],deletion CHD2 NA AC091078.1 NA CosmicCensus, Oncogene NA NA NA NA +15:93004751 15:93496234 CHD2--AC091078.1 BS_68KX6A42 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr15:0.28Mb]],deletion CHD2 NA AC091078.1 NA CosmicCensus, Oncogene NA NA NA NA +15:92924552 15:78054187 CHD2--TBC1D2B BS_68KX6A42 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr15:14.82Mb]],inversion CHD2 NA TBC1D2B NA CosmicCensus, Oncogene NA NA NA NA +7:139541500 7:159131140 CLEC2L--VIPR2 BS_68KX6A42 ARRIBA frameshift 4 2 medium [INTRACHROMOSOMAL[chr7:19.48Mb]],deletion/5'-5' CLEC2L NA VIPR2 NA NA NA NA NA NA +15:68218536 5:10683571 CLN6--DAP BS_68KX6A42 ARRIBA frameshift 6 3 high [INTERCHROMOSOMAL[chr15--chr5]],translocation CLN6 NA DAP NA NA NA NA NA NA +15:68211263 5:10683571 CLN6--DAP BS_68KX6A42 ARRIBA in-frame 3 4 high [INTERCHROMOSOMAL[chr15--chr5]],translocation CLN6 NA DAP NA NA NA NA NA NA +15:68218536 5:10748271 CLN6--DAP BS_68KX6A42 ARRIBA frameshift 1 3 high [INTERCHROMOSOMAL[chr15--chr5]],translocation CLN6 NA DAP NA NA NA NA NA NA +7:135397760 7:74641887 CNOT4--AC211433.3(8003)/GTF2I(15780) BS_68KX6A42 ARRIBA other 3 3 medium [],inversion CNOT4 NA AC211433.3 GTF2I NA NA NA TranscriptionFactor NA +7:147977989 7:96060391 CNTNAP2--DYNC1I1 BS_68KX6A42 ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr7:50.01Mb]],inversion/3'-3' CNTNAP2 NA DYNC1I1 NA TumorSuppressorGene, CosmicCensus NA NA NA NA +7:51085166 7:94909898 COBL--PPP1R9A BS_68KX6A42 ARRIBA frameshift 2 2 high [INTRACHROMOSOMAL[chr7:43.59Mb]],inversion COBL NA PPP1R9A NA NA NA NA NA NA +7:51085166 7:95111259 COBL--PPP1R9A BS_68KX6A42 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:43.59Mb]],inversion COBL NA PPP1R9A NA NA NA NA NA NA +7:51085166 7:95120712 COBL--PPP1R9A BS_68KX6A42 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr7:43.59Mb]],inversion COBL NA PPP1R9A NA NA NA NA NA NA +7:130612152 7:111487341 COPG2--IMMP2L BS_68KX6A42 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr7:18.94Mb]],deletion COPG2 NA IMMP2L NA NA NA NA NA NA +7:138001604 7:8865647 CREB3L2--NXPH1(112684)/AC009500.1(73140) BS_68KX6A42 ARRIBA frameshift 38 6 high [],inversion CREB3L2 NA NXPH1 AC009500.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:117861209 7:64425707 CTTNBP2--AC022202.1 BS_68KX6A42 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr7:53.28Mb]],deletion CTTNBP2 NA AC022202.1 NA NA NA NA NA NA +7:101816093 7:56293423 CUX1--AC073136.1 BS_68KX6A42 ARRIBA frameshift 5 0 medium [INTRACHROMOSOMAL[chr7:45.52Mb]],inversion/3'-3' CUX1 NA AC073136.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:101816093 7:56293423 CUX1--AC073136.1(1998)/AC073136.2(11255) BS_68KX6A42 ARRIBA frameshift 35 3 high [],inversion CUX1 NA AC073136.1 AC073136.2 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:101816093 7:56126102 CUX1--NUPR2(9702)/AC006970.1(37043) BS_68KX6A42 ARRIBA frameshift 6 1 high [],inversion CUX1 NA NUPR2 AC006970.1 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:92134666 7:24702833 CYP51A1--DFNA5 BS_68KX6A42 STARFUSION other 32 11 NA [INTRACHROMOSOMAL[chr7:67.35Mb]] CYP51A1 NA DFNA5 NA NA TumorSuppressorGene NA NA NA +7:92134666 7:24702833 CYP51A1--DFNA5 BS_68KX6A42 ARRIBA other 31 11 high [INTRACHROMOSOMAL[chr7:67.35Mb]],deletion CYP51A1 NA DFNA5 NA NA TumorSuppressorGene NA NA NA +7:6424752 7:134727377 DAGLB--AC009276.1(39387)/TUBB3P2(7521) BS_68KX6A42 ARRIBA frameshift 3 0 medium [],duplication DAGLB NA AC009276.1 TUBB3P2 NA NA NA NA NA +7:6424752 7:134743248 DAGLB--TUBB3P2(8119)/CALD1(1004) BS_68KX6A42 ARRIBA frameshift 3 3 high [],duplication DAGLB NA TUBB3P2 CALD1 NA NA NA NA NA +7:44056903 7:135313714 DBNL--AC009542.2 BS_68KX6A42 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr7:91.18Mb]],deletion/5'-5' DBNL NA AC009542.2 NA NA NA NA NA NA +7:44060912 7:105879648 DBNL--CDHR3 BS_68KX6A42 STARFUSION other 46 12 NA [INTRACHROMOSOMAL[chr7:61.81Mb]] DBNL NA CDHR3 NA NA NA NA NA NA +7:44060829 7:105879648 DBNL--CDHR3 BS_68KX6A42 STARFUSION other 19 12 NA [INTRACHROMOSOMAL[chr7:61.81Mb]] DBNL NA CDHR3 NA NA NA NA NA NA +7:44062021 7:105879645 DBNL--CDHR3 BS_68KX6A42 STARFUSION other 7 12 NA [INTRACHROMOSOMAL[chr7:61.81Mb]] DBNL NA CDHR3 NA NA NA NA NA NA +7:44062197 7:105878664 DBNL--CDHR3 BS_68KX6A42 ARRIBA other 237 79 high [INTRACHROMOSOMAL[chr7:61.81Mb]],deletion DBNL NA CDHR3 NA NA NA NA NA NA +7:44060153 7:105879645 DBNL--CDHR3 BS_68KX6A42 ARRIBA frameshift 6 5 medium [INTRACHROMOSOMAL[chr7:61.81Mb]],deletion DBNL NA CDHR3 NA NA NA NA NA NA +7:44050280 7:14149238 DBNL--DGKB BS_68KX6A42 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr7:29.07Mb]],inversion DBNL NA DGKB NA NA Kinase NA NA NA +7:44059658 7:107672138 DBNL--SLC26A4 BS_68KX6A42 STARFUSION frameshift 46 53 NA [INTRACHROMOSOMAL[chr7:63.59Mb]] DBNL NA SLC26A4 NA NA NA NA NA NA +7:44060912 7:107672138 DBNL--SLC26A4 BS_68KX6A42 ARRIBA frameshift 39 47 high [INTRACHROMOSOMAL[chr7:63.59Mb]],deletion DBNL NA SLC26A4 NA NA NA NA NA NA +7:44060153 7:107672138 DBNL--SLC26A4 BS_68KX6A42 ARRIBA in-frame 33 27 high [INTRACHROMOSOMAL[chr7:63.59Mb]],deletion DBNL NA SLC26A4 NA NA NA NA NA NA +7:44059658 7:107672138 DBNL--SLC26A4 BS_68KX6A42 ARRIBA frameshift 41 13 high [INTRACHROMOSOMAL[chr7:63.59Mb]],deletion DBNL NA SLC26A4 NA NA NA NA NA NA +7:44058480 7:107683202 DBNL--SLC26A4 BS_68KX6A42 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr7:63.59Mb]],deletion DBNL NA SLC26A4 NA NA NA NA NA NA +7:44058983 7:107672138 DBNL--SLC26A4 BS_68KX6A42 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr7:63.59Mb]],deletion DBNL NA SLC26A4 NA NA NA NA NA NA +7:44050280 7:107683455 DBNL--SLC26A4 BS_68KX6A42 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:63.59Mb]],deletion DBNL NA SLC26A4 NA NA NA NA NA NA +7:14841194 7:55337968 DGKB--CALM1P2(77712)/AC073347.1(4348) BS_68KX6A42 ARRIBA frameshift 5 0 high [],inversion DGKB NA CALM1P2 AC073347.1 Kinase NA NA NA NA +7:45454892 7:33367767 ELK1P1(62687)/AC073325.1(5820)--BBS9 BS_68KX6A42 ARRIBA other 7 3 high [],inversion ELK1P1 AC073325.1 BBS9 NA NA NA NA NA NA +7:133289116 7:153463041 EXOC4--PAXBP1P1(13166)/DPP6(424056) BS_68KX6A42 ARRIBA frameshift 1 2 high [],deletion EXOC4 NA PAXBP1P1 DPP6 Oncogene NA NA NA NA +7:133289116 7:153507058 EXOC4--PAXBP1P1(57183)/DPP6(380039) BS_68KX6A42 ARRIBA frameshift 3 2 high [],deletion EXOC4 NA PAXBP1P1 DPP6 Oncogene NA NA NA NA +7:92590194 7:116599207 FAM133B--LINC01510 BS_68KX6A42 ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr7:23.98Mb]],inversion/5'-5' FAM133B NA LINC01510 NA NA NA NA NA NA +15:92655316 15:93322223 FAM174B--AC091078.1 BS_68KX6A42 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr15:0.50Mb]],inversion FAM174B NA AC091078.1 NA NA NA NA NA NA +15:92655316 15:93435780 FAM174B--AC091078.1 BS_68KX6A42 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr15:0.50Mb]],duplication/5'-5' FAM174B NA AC091078.1 NA NA NA NA NA NA +7:208976 7:43298898 FAM20C--HECW1 BS_68KX6A42 ARRIBA frameshift 12 3 medium [INTRACHROMOSOMAL[chr7:42.85Mb]],inversion/3'-3' FAM20C NA HECW1 NA NA NA NA NA NA +7:208976 7:156573149 FAM20C--LINC01006 BS_68KX6A42 ARRIBA frameshift 42 20 high [INTRACHROMOSOMAL[chr7:156.21Mb]],deletion/5'-5' FAM20C NA LINC01006 NA NA NA NA NA NA +7:220100 7:39249622 FAM20C--POU6F2 BS_68KX6A42 ARRIBA other 14 5 medium [INTRACHROMOSOMAL[chr7:38.72Mb]],deletion FAM20C NA POU6F2 NA NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +15:68278665 15:98340202 FEM1B--LINC02351(12708)/FAM169B(96960) BS_68KX6A42 ARRIBA frameshift 4 0 high [],deletion FEM1B NA LINC02351 FAM169B NA NA NA NA NA +7:71335733 7:137355518 GALNT17--AC078842.1(1035)/DGKI(25519) BS_68KX6A42 ARRIBA frameshift 3 0 high [],inversion GALNT17 NA AC078842.1 DGKI NA NA NA NA NA +7:42148226 7:85966601 GLI3--AC092013.1(330257)/SOCS5P1(250184) BS_68KX6A42 ARRIBA frameshift 5 1 high [],duplication GLI3 NA AC092013.1 SOCS5P1 Oncogene, TranscriptionFactor NA NA NA NA +7:2843853 7:8751008 GNA12--NXPH1 BS_68KX6A42 ARRIBA in-frame 5 3 high [INTRACHROMOSOMAL[chr7:5.59Mb]],inversion GNA12 NA NXPH1 NA Oncogene NA NA NA NA +7:2843853 7:38212110 GNA12--STARD3NL BS_68KX6A42 ARRIBA frameshift 13 6 high [INTRACHROMOSOMAL[chr7:35.33Mb]],duplication/5'-5' GNA12 NA STARD3NL NA Oncogene NA NA NA NA +7:6501781 5:1277325 GRID2IP--TERT BS_68KX6A42 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr7--chr5]],translocation/5'-5' GRID2IP NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA +7:74658068 7:148040438 GTF2I--CNTNAP2 BS_68KX6A42 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr7:71.36Mb]],inversion/3'-3' GTF2I NA CNTNAP2 NA TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA +7:74658068 7:116699071 GTF2I--MET BS_68KX6A42 STARFUSION other 187 75 NA [INTRACHROMOSOMAL[chr7:41.91Mb]] GTF2I NA MET NA TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:74658068 7:116699071 GTF2I--MET BS_68KX6A42 ARRIBA other 167 67 high [INTRACHROMOSOMAL[chr7:41.91Mb]],deletion GTF2I NA MET NA TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:74658068 7:116731668 GTF2I--MET BS_68KX6A42 ARRIBA other 38 6 high [INTRACHROMOSOMAL[chr7:41.91Mb]],deletion GTF2I NA MET NA TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:74658068 7:24649612 GTF2I--MPP6 BS_68KX6A42 ARRIBA other 14 3 high [INTRACHROMOSOMAL[chr7:49.96Mb]],duplication GTF2I NA MPP6 NA TranscriptionFactor NA NA NA NA +7:64120545 7:40133259 GUSBP6--MPLKIP BS_68KX6A42 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:23.97Mb]],inversion GUSBP6 NA MPLKIP NA NA NA NA NA NA +7:44835529 7:14613413 H2AFV--DGKB BS_68KX6A42 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:29.85Mb]],deletion H2AFV NA DGKB NA NA Kinase NA NA NA +7:81752120 7:112522717 HGF--NPM1P14(1047)/AC002463.1(99661) BS_68KX6A42 ARRIBA frameshift 5 2 high [],inversion HGF NA NPM1P14 AC002463.1 Oncogene NA NA NA NA +7:75738801 17:56604707 HIP1--NOG(9117)/C17orf67(187206) BS_68KX6A42 ARRIBA frameshift 24 16 high [],translocation HIP1 NA NOG C17orf67 CosmicCensus, Oncogene NA NA NA NA +7:139715932 7:88839792 HIPK2--ZNF804B BS_68KX6A42 ARRIBA frameshift 66 20 high [INTRACHROMOSOMAL[chr7:50.22Mb]],deletion/5'-5' HIPK2 NA ZNF804B NA Kinase, TumorSuppressorGene, Oncogene, Kinase TranscriptionFactor NA NA NA +4:56655857 4:56820579 HOPX--SPINK2 BS_68KX6A42 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr4:0.13Mb]],duplication HOPX NA SPINK2 NA TumorSuppressorGene NA NA NA NA +15:98948708 5:8083439 IGF1R--AC091941.1(2678)/AC091912.2(60179) BS_68KX6A42 ARRIBA frameshift 5 1 medium [],translocation IGF1R NA AC091941.1 AC091912.2 Kinase, Oncogene, Kinase NA NA NA NA +15:98891637 15:98520389 IGF1R--FAM169B BS_68KX6A42 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr15:0.10Mb]],inversion IGF1R NA FAM169B NA Kinase, Oncogene, Kinase NA NA NA NA +15:98948708 5:8072322 IGF1R--RNU1-76P(92018)/AC091941.1(7864) BS_68KX6A42 ARRIBA frameshift 6 0 medium [],translocation IGF1R NA RNU1-76P AC091941.1 Kinase, Oncogene, Kinase NA NA NA NA +7:50327757 7:51011781 IKZF1--AC004830.1 BS_68KX6A42 ARRIBA frameshift 6 2 high [INTRACHROMOSOMAL[chr7:0.46Mb]],deletion IKZF1 NA AC004830.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:50327757 7:51020972 IKZF1--AC004830.1 BS_68KX6A42 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:0.46Mb]],deletion IKZF1 NA AC004830.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:50327757 7:51017393 IKZF1--AC004830.1 BS_68KX6A42 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr7:0.46Mb]],deletion IKZF1 NA AC004830.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:50327757 7:90271909 IKZF1--CFAP69 BS_68KX6A42 ARRIBA frameshift 4 4 high [INTRACHROMOSOMAL[chr7:39.84Mb]],inversion/3'-3' IKZF1 NA CFAP69 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:50327757 7:148118118 IKZF1--CNTNAP2 BS_68KX6A42 ARRIBA in-frame 2 2 high [INTRACHROMOSOMAL[chr7:95.71Mb]],deletion IKZF1 NA CNTNAP2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA +7:50327757 7:148014071 IKZF1--CNTNAP2 BS_68KX6A42 ARRIBA frameshift 2 2 high [INTRACHROMOSOMAL[chr7:95.71Mb]],deletion IKZF1 NA CNTNAP2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA +7:50327757 7:4740838 IKZF1--FOXK1 BS_68KX6A42 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:45.53Mb]],duplication IKZF1 NA FOXK1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TranscriptionFactor NA NA NA +7:50327757 7:71293105 IKZF1--GALNT17 BS_68KX6A42 ARRIBA frameshift 15 4 high [INTRACHROMOSOMAL[chr7:20.73Mb]],inversion/3'-3' IKZF1 NA GALNT17 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:111561851 7:106271106 IMMP2L--NAMPT BS_68KX6A42 ARRIBA other 5 0 high [INTRACHROMOSOMAL[chr7:4.38Mb]],inversion/5'-5' IMMP2L NA NAMPT NA NA NA NA NA NA +7:28180463 7:25595008 JAZF1--AC005165.1 BS_68KX6A42 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:2.08Mb]],inversion/5'-5' JAZF1 NA AC005165.1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:28180464 7:25582946 JAZF1--AC091705.1(31884)/AC005165.1(10405) BS_68KX6A42 ARRIBA frameshift 6 1 medium [],inversion JAZF1 NA AC091705.1 AC005165.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:28180463 7:76060373 JAZF1--MDH2 BS_68KX6A42 STARFUSION frameshift 93 28 NA [INTRACHROMOSOMAL[chr7:47.87Mb]] JAZF1 NA MDH2 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:28180463 7:76060373 JAZF1--MDH2 BS_68KX6A42 ARRIBA frameshift 86 23 high [INTRACHROMOSOMAL[chr7:47.87Mb]],inversion JAZF1 NA MDH2 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:28180463 7:76063515 JAZF1--MDH2 BS_68KX6A42 ARRIBA frameshift 9 5 medium [INTRACHROMOSOMAL[chr7:47.87Mb]],inversion JAZF1 NA MDH2 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:141686559 7:38335350 KIAA1147--TRGV7 BS_68KX6A42 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr7:103.32Mb]],deletion KIAA1147 NA TRGV7 NA Oncogene NA NA NA NA +7:141686559 7:38330653 KIAA1147--TRGV8 BS_68KX6A42 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr7:103.33Mb]],deletion KIAA1147 NA TRGV8 NA Oncogene NA NA NA NA +7:138894342 7:5331488 KIAA1549--TNRC18 BS_68KX6A42 ARRIBA frameshift 4 3 high [INTRACHROMOSOMAL[chr7:133.41Mb]],inversion/5'-5' KIAA1549 NA TNRC18 NA CosmicCensus, Oncogene NA NA NA NA +7:138894342 7:5325248 KIAA1549--TNRC18 BS_68KX6A42 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:133.41Mb]],deletion KIAA1549 NA TNRC18 NA CosmicCensus, Oncogene NA NA NA NA +7:152435626 7:93574506 KMT2C--CALCR BS_68KX6A42 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr7:58.56Mb]],deletion KMT2C NA CALCR NA TumorSuppressorGene, CosmicCensus, Oncogene Oncogene NA NA NA +7:152435626 7:38102364 KMT2C--SFRP4(76669)/STARD3NL(75858) BS_68KX6A42 ARRIBA frameshift 11 3 high [],inversion KMT2C NA SFRP4 STARD3NL TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +7:105014535 7:22315476 KMT2E--RAPGEF5 BS_68KX6A42 STARFUSION other 48 3 NA [INTRACHROMOSOMAL[chr7:82.66Mb]] KMT2E NA RAPGEF5 NA NA NA NA NA NA +7:105014535 7:22315476 KMT2E--RAPGEF5 BS_68KX6A42 ARRIBA other 43 2 high [INTRACHROMOSOMAL[chr7:82.66Mb]],inversion KMT2E NA RAPGEF5 NA NA NA NA NA NA +7:105013501 7:25142814 KMT2E-AS1--C7orf31 BS_68KX6A42 STARFUSION other 37 3 NA [INTRACHROMOSOMAL[chr7:79.83Mb]] KMT2E-AS1 NA C7orf31 NA NA NA NA NA NA +7:105013881 7:25142814 KMT2E-AS1--C7orf31 BS_68KX6A42 ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr7:79.83Mb]],deletion KMT2E-AS1 NA C7orf31 NA NA NA NA NA NA +7:104329224 7:94629841 LHFPL3--SGCE BS_68KX6A42 ARRIBA in-frame 4 1 medium [INTRACHROMOSOMAL[chr7:9.67Mb]],inversion LHFPL3 NA SGCE NA NA NA NA NA NA +7:104329224 7:94628359 LHFPL3--SGCE BS_68KX6A42 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:9.67Mb]],inversion LHFPL3 NA SGCE NA NA NA NA NA NA +7:44039986 7:157831387 LINC00957--PTPRN2 BS_68KX6A42 ARRIBA other 104 50 medium [INTRACHROMOSOMAL[chr7:113.50Mb]],duplication/3'-3' LINC00957 NA PTPRN2 NA NA NA NA NA NA +7:105012932 7:25142814 LINC01004--C7orf31 BS_68KX6A42 STARFUSION other 132 41 NA [INTRACHROMOSOMAL[chr7:79.77Mb]] LINC01004 NA C7orf31 NA NA NA NA NA NA +7:105012932 7:25142814 LINC01004--C7orf31 BS_68KX6A42 ARRIBA other 124 36 high [INTRACHROMOSOMAL[chr7:79.77Mb]],deletion LINC01004 NA C7orf31 NA NA NA NA NA NA +7:105012932 7:25142332 LINC01004--C7orf31 BS_68KX6A42 ARRIBA other 1 4 high [INTRACHROMOSOMAL[chr7:79.77Mb]],deletion LINC01004 NA C7orf31 NA NA NA NA NA NA +7:105012932 7:25136793 LINC01004--C7orf31 BS_68KX6A42 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr7:79.77Mb]],deletion LINC01004 NA C7orf31 NA NA NA NA NA NA +1:74183436 1:74183684 LRRIQ3--LRRIQ3 BS_68KX6A42 ARRIBA in-frame 16 0 low [SELFIE,INTRACHROMOSOMAL[chr1:0.17Mb]],duplication/non-canonical_splicing LRRIQ3 NA LRRIQ3 NA NA NA NA NA NA +7:111091504 7:123134529 LRRN3--SLC13A1 BS_68KX6A42 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:11.99Mb]],inversion LRRN3 NA SLC13A1 NA NA NA NA NA NA +7:2213212 7:69443098 MAD1L1--AC092100.1(12175)/Y_RNA(64412) BS_68KX6A42 ARRIBA frameshift 2 1 medium [],duplication MAD1L1 NA AC092100.1 Y_RNA TumorSuppressorGene, Oncogene NA NA NA NA +7:79453655 7:12383601 MAGI2-AS3--VWDE BS_68KX6A42 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr7:67.05Mb]],inversion MAGI2-AS3 NA VWDE NA NA NA NA NA NA +5:10426522 5:1262488 MARCH6--TERT BS_68KX6A42 ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr5:9.06Mb]],duplication/5'-5' MARCH6 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA +7:76058078 7:47677205 MDH2--C7orf65(15557)/HUS1(18525) BS_68KX6A42 ARRIBA frameshift 211 57 high [],duplication MDH2 NA C7orf65 HUS1 NA NA NA Oncogene NA +7:116741025 7:116739950 MET--MET BS_68KX6A42 ARRIBA in-frame 366 66 high [SELFIE,INTRACHROMOSOMAL[chr7:0.13Mb]],duplication/non-canonical_splicing MET NA MET NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:7568123 7:106024381 MIOS--CDHR3 BS_68KX6A42 ARRIBA other 61 27 high [INTRACHROMOSOMAL[chr7:98.27Mb]],deletion MIOS NA CDHR3 NA NA NA NA NA NA +7:7568123 7:106028551 MIOS--CDHR3 BS_68KX6A42 ARRIBA other 1 3 high [INTRACHROMOSOMAL[chr7:98.27Mb]],deletion MIOS NA CDHR3 NA NA NA NA NA NA +7:7567072 7:106024381 MIOS--CDHR3 BS_68KX6A42 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr7:98.27Mb]],deletion MIOS NA CDHR3 NA NA NA NA NA NA +7:7567072 7:106028551 MIOS--CDHR3 BS_68KX6A42 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:98.27Mb]],deletion MIOS NA CDHR3 NA NA NA NA NA NA +7:24649764 7:148084580 MPP6--CNTNAP2 BS_68KX6A42 ARRIBA frameshift 11 5 high [INTRACHROMOSOMAL[chr7:121.42Mb]],inversion/3'-3' MPP6 NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA +15:71999851 15:101523069 MYO9A--AC090164.3 BS_68KX6A42 STARFUSION other 22 16 NA [INTRACHROMOSOMAL[chr15:29.40Mb]] MYO9A NA AC090164.3 NA NA NA NA NA NA +15:71999851 15:101523069 MYO9A--AC090164.3 BS_68KX6A42 ARRIBA frameshift 21 13 high [INTRACHROMOSOMAL[chr15:29.40Mb]],duplication MYO9A NA AC090164.3 NA NA NA NA NA NA +7:45085848 7:26218111 NACAD--CBX3(4755)/AC010677.1(58084) BS_68KX6A42 ARRIBA frameshift 4 2 medium [],deletion NACAD NA CBX3 AC010677.1 NA NA NA NA NA +7:44484968 7:38817882 NUDCD3--VPS41 BS_68KX6A42 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:5.45Mb]],deletion NUDCD3 NA VPS41 NA NA NA NA NA NA +7:135557972 7:70335700 NUP205--AUTS2 BS_68KX6A42 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr7:64.76Mb]],inversion/3'-3' NUP205 NA AUTS2 NA NA NA NA NA NA +7:135557972 7:116654776 NUP205--LINC01510(39956)/MET(17614) BS_68KX6A42 ARRIBA frameshift 86 0 high [],duplication NUP205 NA LINC01510 MET NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA +7:135557972 7:43608256 NUP205--STK17A BS_68KX6A42 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:91.93Mb]],duplication NUP205 NA STK17A NA NA Kinase NA NA NA +7:8435767 7:105169265 NXPH1--SRPK2 BS_68KX6A42 ARRIBA frameshift 1 2 low [INTRACHROMOSOMAL[chr7:96.36Mb]],inversion NXPH1 NA SRPK2 NA NA Kinase, Oncogene, Kinase NA NA NA +7:24892377 7:108638983 OSBPL3--AC005487.1(24716)/AC002487.1(81625) BS_68KX6A42 ARRIBA frameshift 3 1 high [],inversion OSBPL3 NA AC005487.1 AC002487.1 Oncogene NA NA NA NA +7:31873292 7:46769216 PDE1C--AC011294.1(9365)/EPS15P1(12157) BS_68KX6A42 ARRIBA frameshift 60 27 high [],inversion PDE1C NA AC011294.1 EPS15P1 NA NA NA NA NA +7:31873292 7:46794411 PDE1C--EPS15P1(10968)/AC004870.4(96214) BS_68KX6A42 ARRIBA frameshift 73 21 high [],inversion PDE1C NA EPS15P1 AC004870.4 NA NA NA NA NA +15:68086750 5:8228670 PIAS1--AC091912.1(70882)/LINC02226(104811) BS_68KX6A42 ARRIBA frameshift 2 3 high [],translocation PIAS1 NA AC091912.1 LINC02226 TumorSuppressorGene NA NA NA NA +15:68086750 5:10377798 PIAS1--MARCH6 BS_68KX6A42 ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr15--chr5]],translocation PIAS1 NA MARCH6 NA TumorSuppressorGene NA NA NA NA +15:68086750 15:72139577 PIAS1--SENP8 BS_68KX6A42 ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr15:3.92Mb]],deletion PIAS1 NA SENP8 NA TumorSuppressorGene NA NA NA NA +7:47811817 7:55497690 PKD1L1--VOPP1 BS_68KX6A42 ARRIBA frameshift 2 3 high [INTRACHROMOSOMAL[chr7:7.49Mb]],duplication PKD1L1 NA VOPP1 NA NA NA NA NA NA +7:47815334 7:55497690 PKD1L1--VOPP1 BS_68KX6A42 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:7.49Mb]],duplication PKD1L1 NA VOPP1 NA NA NA NA NA NA +7:101215908 7:68150323 PLOD3--AC093655.1 BS_68KX6A42 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:32.92Mb]],deletion PLOD3 NA AC093655.1 NA NA NA NA NA NA +7:101215089 7:68150323 PLOD3--AC093655.1 BS_68KX6A42 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:32.92Mb]],deletion PLOD3 NA AC093655.1 NA NA NA NA NA NA +7:101212837 7:139525879 PLOD3--CLEC2L BS_68KX6A42 ARRIBA frameshift 10 6 medium [INTRACHROMOSOMAL[chr7:38.31Mb]],inversion PLOD3 NA CLEC2L NA NA NA NA NA NA +7:101215089 7:139536274 PLOD3--CLEC2L BS_68KX6A42 ARRIBA in-frame 3 2 medium [INTRACHROMOSOMAL[chr7:38.31Mb]],inversion PLOD3 NA CLEC2L NA NA NA NA NA NA +7:101215908 7:139536274 PLOD3--CLEC2L BS_68KX6A42 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr7:38.31Mb]],inversion PLOD3 NA CLEC2L NA NA NA NA NA NA +7:73006806 7:115823232 PMS2P7--AC093714.2(32183)/Y_RNA(10041) BS_68KX6A42 ARRIBA other 5 0 medium [],deletion PMS2P7 NA AC093714.2 Y_RNA NA NA NA NA NA +7:131556260 7:142468311 PODXL--TRBV5-4(4730)/TRBV6-6(1226) BS_68KX6A42 ARRIBA frameshift 3 4 high [],duplication PODXL NA TRBV5-4 TRBV6-6 NA NA NA NA NA +7:131556260 7:142335396 PODXL--TRBV7-1(2695)/TRBV4-2(10025) BS_68KX6A42 ARRIBA frameshift 2 1 medium [],duplication PODXL NA TRBV7-1 TRBV4-2 NA NA NA NA NA +7:75417428 7:57685861 POM121C--AC064862.3(30469)/AC023141.4(84758) BS_68KX6A42 ARRIBA other 14 0 low [],deletion POM121C NA AC064862.3 AC023141.4 NA NA NA NA NA +7:95424515 7:159009415 PON2--LINC00689 BS_68KX6A42 ARRIBA frameshift 9 1 medium [INTRACHROMOSOMAL[chr7:63.57Mb]],duplication/5'-5' PON2 NA LINC00689 NA NA NA NA NA NA +11:70343892 11:70343669 PPFIA1--PPFIA1 BS_68KX6A42 ARRIBA frameshift 18 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr11:0.11Mb]],duplication/non-canonical_splicing PPFIA1 NA PPFIA1 NA NA NA NA NA NA +7:137314406 7:156336359 PTN--AC093813.1(72557)/AC073133.1(96164) BS_68KX6A42 ARRIBA other 57 18 high [],inversion PTN NA AC093813.1 AC073133.1 Oncogene NA NA NA NA +7:137343439 7:21708855 PTN--DNAH11 BS_68KX6A42 ARRIBA other 52 22 medium [INTRACHROMOSOMAL[chr7:115.33Mb]],deletion/5'-5' PTN NA DNAH11 NA Oncogene NA NA NA NA +7:137343439 7:116699071 PTN--MET BS_68KX6A42 STARFUSION other 150 81 NA [INTRACHROMOSOMAL[chr7:20.43Mb]] PTN NA MET NA Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:137343439 7:116699071 PTN--MET BS_68KX6A42 ARRIBA other 138 61 medium [INTRACHROMOSOMAL[chr7:20.43Mb]],inversion PTN NA MET NA Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:137343439 7:116731668 PTN--MET BS_68KX6A42 ARRIBA other 10 5 medium [INTRACHROMOSOMAL[chr7:20.43Mb]],inversion PTN NA MET NA Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:77571186 7:72378301 PTPN12--CALN1 BS_68KX6A42 ARRIBA frameshift 6 2 high [INTRACHROMOSOMAL[chr7:5.09Mb]],inversion PTPN12 NA CALN1 NA TumorSuppressorGene NA NA NA NA +7:77571186 7:158911550 PTPN12--WDR60 BS_68KX6A42 STARFUSION frameshift 52 20 NA [INTRACHROMOSOMAL[chr7:81.22Mb]] PTPN12 NA WDR60 NA TumorSuppressorGene NA NA NA NA +7:77571186 7:158911550 PTPN12--WDR60 BS_68KX6A42 ARRIBA frameshift 50 18 high [INTRACHROMOSOMAL[chr7:81.22Mb]],deletion PTPN12 NA WDR60 NA TumorSuppressorGene NA NA NA NA +7:77537645 7:158911550 PTPN12--WDR60 BS_68KX6A42 ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr7:81.22Mb]],deletion PTPN12 NA WDR60 NA TumorSuppressorGene NA NA NA NA +7:77571186 7:158922377 PTPN12--WDR60 BS_68KX6A42 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:81.22Mb]],deletion PTPN12 NA WDR60 NA TumorSuppressorGene NA NA NA NA +7:157682725 7:70644144 PTPRN2--AUTS2 BS_68KX6A42 ARRIBA frameshift 10 4 high [INTRACHROMOSOMAL[chr7:86.75Mb]],deletion/5'-5' PTPRN2 NA AUTS2 NA NA NA NA NA NA +7:158192327 7:2795143 PTPRN2--GNA12 BS_68KX6A42 ARRIBA in-frame 4 3 medium [INTRACHROMOSOMAL[chr7:154.69Mb]],deletion PTPRN2 NA GNA12 NA NA Oncogene NA NA NA +7:158205171 7:2795143 PTPRN2--GNA12 BS_68KX6A42 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr7:154.69Mb]],deletion PTPRN2 NA GNA12 NA NA Oncogene NA NA NA +7:157682725 7:149080717 PTPRN2--ZNF786 BS_68KX6A42 ARRIBA in-frame 12 2 high [INTRACHROMOSOMAL[chr7:8.45Mb]],deletion PTPRN2 NA ZNF786 NA NA TranscriptionFactor NA NA NA +7:157682725 7:149074538 PTPRN2--ZNF786 BS_68KX6A42 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr7:8.45Mb]],deletion PTPRN2 NA ZNF786 NA NA TranscriptionFactor NA NA NA +7:39623825 7:152330335 RALA--KMT2C BS_68KX6A42 ARRIBA other 15 3 high [INTRACHROMOSOMAL[chr7:112.43Mb]],deletion/5'-5' RALA NA KMT2C NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +7:128323527 7:139793962 RBM28--TBXAS1 BS_68KX6A42 ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr7:11.43Mb]],duplication/5'-5' RBM28 NA TBXAS1 NA NA NA NA NA NA +7:92537184 7:116823650 RBM48--CAPZA2 BS_68KX6A42 ARRIBA other 3 5 medium [INTRACHROMOSOMAL[chr7:24.27Mb]],deletion RBM48 NA CAPZA2 NA NA NA NA NA NA +14:102593325 14:102434235 RCOR1--TECPR2 BS_68KX6A42 STARFUSION in-frame 13 6 NA [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr14:0.09Mb],LOCAL_REARRANGEMENT:+:[90180]] RCOR1 NA TECPR2 NA NA NA NA NA TCGAFusion +14:102593325 14:102434235 RCOR1--TECPR2 BS_68KX6A42 ARRIBA in-frame 11 5 high [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr14:0.09Mb],LOCAL_REARRANGEMENT:+:[90180]],duplication RCOR1 NA TECPR2 NA NA NA NA NA TCGAFusion +14:102593325 14:102431796 RCOR1--TECPR2 BS_68KX6A42 ARRIBA in-frame 5 6 high [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr14:0.09Mb],LOCAL_REARRANGEMENT:+:[90180]],duplication RCOR1 NA TECPR2 NA NA NA NA NA TCGAFusion +14:102593323 14:102431795 RCOR1--TECPR2 BS_68KX6A42 ARRIBA frameshift 1 6 high [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr14:0.09Mb],LOCAL_REARRANGEMENT:+:[90180]],duplication RCOR1 NA TECPR2 NA NA NA NA NA TCGAFusion +15:93072916 15:92430049 RGMA--ST8SIA2 BS_68KX6A42 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr15:0.57Mb]],inversion RGMA NA ST8SIA2 NA NA NA NA NA NA +7:5711761 7:105090009 RNF216--KMT2E BS_68KX6A42 ARRIBA frameshift 8 2 high [INTRACHROMOSOMAL[chr7:99.23Mb]],inversion RNF216 NA KMT2E NA Oncogene NA NA NA NA +5:10448383 5:8190344 ROPN1L--AC091912.1(32556)/LINC02226(143137) BS_68KX6A42 ARRIBA frameshift 4 0 medium [],duplication ROPN1L NA AC091912.1 LINC02226 NA NA NA NA NA +7:33099307 7:33367767 RP9--BBS9 BS_68KX6A42 ARRIBA in-frame 11 7 high [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_INVERSION:-:+:[19843]],inversion RP9 NA BBS9 NA NA NA NA NA NA +7:33099307 7:33383666 RP9--BBS9 BS_68KX6A42 ARRIBA frameshift 2 2 high [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_INVERSION:-:+:[19843]],inversion RP9 NA BBS9 NA NA NA NA NA NA +7:33100531 7:33367767 RP9--BBS9 BS_68KX6A42 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_INVERSION:-:+:[19843]],inversion RP9 NA BBS9 NA NA NA NA NA NA +7:33109221 7:33367767 RP9--BBS9 BS_68KX6A42 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:0.02Mb],LOCAL_INVERSION:-:+:[19843]],inversion RP9 NA BBS9 NA NA NA NA NA NA +7:33099307 7:45454990 RP9--ELK1P1(62785)/AC073325.1(5722) BS_68KX6A42 ARRIBA frameshift 6 0 high [],duplication RP9 NA ELK1P1 AC073325.1 NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_68KX6A42 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:77750064 7:6474284 RSBN1L--KDELR2 BS_68KX6A42 ARRIBA frameshift 13 3 high [INTRACHROMOSOMAL[chr7:71.21Mb]],inversion RSBN1L NA KDELR2 NA NA NA NA NA NA +7:77750064 7:6469754 RSBN1L--KDELR2 BS_68KX6A42 ARRIBA in-frame 1 2 medium [INTRACHROMOSOMAL[chr7:71.21Mb]],inversion RSBN1L NA KDELR2 NA NA NA NA NA NA +7:77736526 7:6474284 RSBN1L--KDELR2 BS_68KX6A42 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr7:71.21Mb]],inversion RSBN1L NA KDELR2 NA NA NA NA NA NA +4:53273826 4:57033311 SCFD2--IGFBP7 BS_68KX6A42 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr4:3.66Mb]],duplication SCFD2 NA IGFBP7 NA NA TumorSuppressorGene, Oncogene NA NA NA +4:53273826 4:57040933 SCFD2--IGFBP7 BS_68KX6A42 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr4:3.66Mb]],duplication SCFD2 NA IGFBP7 NA NA TumorSuppressorGene, Oncogene NA NA NA +4:53313636 4:57040933 SCFD2--IGFBP7 BS_68KX6A42 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr4:3.66Mb]],duplication SCFD2 NA IGFBP7 NA NA TumorSuppressorGene, Oncogene NA NA NA +7:29937644 7:32517225 SCRN1--AVL9 BS_68KX6A42 ARRIBA other 16 8 medium [INTRACHROMOSOMAL[chr7:2.51Mb]],duplication/5'-5' SCRN1 NA AVL9 NA NA NA NA NA NA +7:29940682 7:32489344 SCRN1--LSM5 BS_68KX6A42 STARFUSION in-frame 23 10 NA [INTRACHROMOSOMAL[chr7:2.50Mb]] SCRN1 NA LSM5 NA NA NA NA NA NA +7:29940682 7:32489344 SCRN1--LSM5 BS_68KX6A42 ARRIBA in-frame 23 10 high [INTRACHROMOSOMAL[chr7:2.50Mb]],duplication SCRN1 NA LSM5 NA NA NA NA NA NA +7:3642105 7:83469302 SDK1--SEMA3E BS_68KX6A42 ARRIBA frameshift 2 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr7:79.09Mb]],inversion SDK1 NA SEMA3E NA NA NA NA NA NA +15:101274420 15:78182785 SELENOS--ACSBG1 BS_68KX6A42 STARFUSION frameshift 22 5 NA [INTRACHROMOSOMAL[chr15:23.03Mb]] SELENOS NA ACSBG1 NA NA NA NA NA NA +15:101274420 15:78182785 SELENOS--ACSBG1 BS_68KX6A42 ARRIBA frameshift 22 5 high [INTRACHROMOSOMAL[chr15:23.03Mb]],deletion SELENOS NA ACSBG1 NA NA NA NA NA NA +7:80789306 7:155806557 SEMA3C--SHH BS_68KX6A42 ARRIBA frameshift 3 3 high [INTRACHROMOSOMAL[chr7:74.88Mb]],duplication SEMA3C NA SHH NA NA Oncogene NA NA NA +7:80916679 7:76330233 SEMA3C--YWHAG BS_68KX6A42 STARFUSION frameshift 23 2 NA [INTRACHROMOSOMAL[chr7:4.38Mb]] SEMA3C NA YWHAG NA NA NA NA NA NA +7:80916679 7:76330233 SEMA3C--YWHAG BS_68KX6A42 ARRIBA frameshift 22 2 high [INTRACHROMOSOMAL[chr7:4.38Mb]],deletion SEMA3C NA YWHAG NA NA NA NA NA NA +7:83490114 7:56293423 SEMA3E--AC073136.1(1998)/AC073136.2(11255) BS_68KX6A42 ARRIBA frameshift 4 2 high [],deletion SEMA3E NA AC073136.1 AC073136.2 NA NA NA NA NA +15:72146446 15:63608218 SENP8--FBXL22(5790)/HERC1(400) BS_68KX6A42 ARRIBA other 8 6 medium [],duplication SENP8 NA FBXL22 HERC1 NA NA NA NA NA +7:107675109 7:141593146 SLC26A4--AGK BS_68KX6A42 STARFUSION frameshift 81 24 NA [INTRACHROMOSOMAL[chr7:33.83Mb]] SLC26A4 NA AGK NA NA NA NA NA NA +7:107675109 7:141593146 SLC26A4--AGK BS_68KX6A42 ARRIBA frameshift 73 21 high [INTRACHROMOSOMAL[chr7:33.83Mb]],deletion SLC26A4 NA AGK NA NA NA NA NA NA +7:107690237 7:116819584 SLC26A4--CAPZA2 BS_68KX6A42 ARRIBA frameshift 78 39 high [INTRACHROMOSOMAL[chr7:9.09Mb]],inversion/3'-3' SLC26A4 NA CAPZA2 NA NA NA NA NA NA +7:107690237 7:116784891 SLC26A4--MET BS_68KX6A42 ARRIBA frameshift 5 8 high [INTRACHROMOSOMAL[chr7:8.95Mb]],inversion/3'-3' SLC26A4 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +7:5291821 7:64213092 SLC29A4--ZNF735 BS_68KX6A42 ARRIBA in-frame 6 4 high [INTRACHROMOSOMAL[chr7:58.90Mb]],deletion SLC29A4 NA ZNF735 NA NA TranscriptionFactor NA NA NA +7:151275114 7:124349924 SMARCD3--AC006148.1 BS_68KX6A42 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr7:26.84Mb]],deletion/5'-5' SMARCD3 NA AC006148.1 NA NA NA NA NA NA +7:127888464 7:150801078 SND1--TMEM176B BS_68KX6A42 STARFUSION other 12 9 NA [INTRACHROMOSOMAL[chr7:22.70Mb]] SND1 NA TMEM176B NA CosmicCensus NA NA NA NA +7:127888464 7:150801078 SND1--TMEM176B BS_68KX6A42 ARRIBA other 25 12 medium [INTRACHROMOSOMAL[chr7:22.70Mb]],inversion SND1 NA TMEM176B NA CosmicCensus NA NA NA NA +15:45023349 15:93498521 SORD--AC091078.1 BS_68KX6A42 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr15:48.24Mb]],deletion SORD NA AC091078.1 NA NA NA NA NA NA +15:45023349 15:93496234 SORD--AC091078.1 BS_68KX6A42 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:48.24Mb]],deletion SORD NA AC091078.1 NA NA NA NA NA NA +7:141750384 7:122325581 SSBP1--CADPS2 BS_68KX6A42 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr7:18.85Mb]],inversion SSBP1 NA CADPS2 NA NA Oncogene NA NA NA +7:141750384 7:122320338 SSBP1--CADPS2 BS_68KX6A42 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr7:18.85Mb]],inversion SSBP1 NA CADPS2 NA NA Oncogene NA NA NA +7:117020629 7:88656436 ST7--EEF1A1P28(16020)/AC002127.2(54195) BS_68KX6A42 ARRIBA frameshift 2 1 high [],inversion ST7 NA EEF1A1P28 AC002127.2 TumorSuppressorGene NA NA NA NA +7:117020629 7:24547493 ST7--RNU6-1103P(10055)/MPP6(25775) BS_68KX6A42 ARRIBA frameshift 12 11 high [],duplication ST7 NA RNU6-1103P MPP6 TumorSuppressorGene NA NA NA NA +7:116953691 7:100064912 ST7--ZNF3 BS_68KX6A42 ARRIBA in-frame 13 1 high [INTRACHROMOSOMAL[chr7:16.87Mb]],inversion ST7 NA ZNF3 NA TumorSuppressorGene TranscriptionFactor NA NA NA +7:116954679 7:100064912 ST7--ZNF3 BS_68KX6A42 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr7:16.87Mb]],inversion ST7 NA ZNF3 NA TumorSuppressorGene TranscriptionFactor NA NA NA +7:116954679 7:100064912 ST7-OT4_1--ZNF3 BS_68KX6A42 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:16.87Mb]],inversion ST7-OT4_1 NA ZNF3 NA NA TranscriptionFactor NA NA NA +7:116955153 7:100064912 ST7-OT4_2--ZNF3 BS_68KX6A42 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr7:16.87Mb]],inversion ST7-OT4_2 NA ZNF3 NA NA TranscriptionFactor NA NA NA +7:116955153 7:100064912 ST7-OT4--ZNF3 BS_68KX6A42 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr7:16.87Mb]],inversion ST7-OT4 NA ZNF3 NA NA TranscriptionFactor NA NA NA +7:116954679 7:100064912 ST7-OT4--ZNF3 BS_68KX6A42 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr7:16.87Mb]],inversion ST7-OT4 NA ZNF3 NA NA TranscriptionFactor NA NA NA +7:38207087 7:126533887 STARD3NL--GRM8 BS_68KX6A42 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr7:88.21Mb]],duplication/3'-3' STARD3NL NA GRM8 NA NA NA NA NA NA +7:43608400 7:101731725 STK17A--MYL10(102429)/CUX1(84179) BS_68KX6A42 ARRIBA frameshift 88 23 high [],deletion STK17A NA MYL10 CUX1 Kinase NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA +7:43608400 7:14077193 STK17A--RPL6P21(5813)/DGKB(67856) BS_68KX6A42 ARRIBA frameshift 41 6 high [],duplication STK17A NA RPL6P21 DGKB Kinase NA NA Kinase NA +7:129470715 7:43442828 STRIP2--HECW1 BS_68KX6A42 ARRIBA frameshift 1 3 high [INTRACHROMOSOMAL[chr7:85.87Mb]],inversion/3'-3' STRIP2 NA HECW1 NA NA NA NA NA NA +15:71411823 15:92570273 THSD4--LINC00930 BS_68KX6A42 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr15:20.78Mb]],inversion THSD4 NA LINC00930 NA NA NA NA NA NA +15:71765199 15:101476293 THSD4--PCSK6 BS_68KX6A42 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr15:29.51Mb]],deletion/5'-5' THSD4 NA PCSK6 NA NA NA NA NA NA +7:38336826 7:141686547 TRGV7(1312)/TRGV6(3874)--KIAA1147 BS_68KX6A42 ARRIBA other 13 1 medium [],deletion TRGV7 TRGV6 KIAA1147 NA NA Oncogene NA NA NA +7:100477277 7:141366840 TSC22D4--TMEM178B BS_68KX6A42 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr7:40.59Mb]],inversion TSC22D4 NA TMEM178B NA NA NA NA NA NA +7:157231327 7:158205273 UBE3C--PTPRN2 BS_68KX6A42 ARRIBA frameshift 6 6 high [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr7:0.27Mb]],inversion UBE3C NA PTPRN2 NA NA NA NA NA TCGAFusion +7:139261741 7:18754942 UBN2--HDAC9 BS_68KX6A42 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr7:120.23Mb]],inversion/3'-3' UBN2 NA HDAC9 NA NA NA NA NA NA +7:7801743 7:21011546 UMAD1--LINC01162 BS_68KX6A42 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr7:12.87Mb]],inversion/3'-3' UMAD1 NA LINC01162 NA NA NA NA NA NA +17:21021113 11:48110058 USP22--PTPRJ BS_68KX6A42 ARRIBA frameshift 7 2 high [INTERCHROMOSOMAL[chr17--chr11]],translocation USP22 NA PTPRJ NA NA TumorSuppressorGene, Oncogene NA NA NA +17:21021113 11:48082141 USP22--PTPRJ BS_68KX6A42 ARRIBA frameshift 2 2 medium [INTERCHROMOSOMAL[chr17--chr11]],translocation USP22 NA PTPRJ NA NA TumorSuppressorGene, Oncogene NA NA NA +4:52659115 4:56179284 USP46--KIAA1211 BS_68KX6A42 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr4:3.39Mb]],inversion USP46 NA KIAA1211 NA NA NA NA NA NA +7:38817817 7:14841450 VPS41--DGKB BS_68KX6A42 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr7:23.75Mb]],deletion VPS41 NA DGKB NA NA Kinase NA NA NA +7:38909154 7:10257709 VPS41--U3(34698)/MGC4859(192111) BS_68KX6A42 ARRIBA frameshift 2 0 medium [],deletion VPS41 NA U3 MGC4859 NA NA NA NA NA +7:76358722 7:65649550 YWHAG--AC073107.1 BS_68KX6A42 ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr7:10.56Mb]],deletion YWHAG NA AC073107.1 NA NA NA NA NA NA +7:76358722 7:65671239 YWHAG--AC073107.1 BS_68KX6A42 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:10.56Mb]],deletion YWHAG NA AC073107.1 NA NA NA NA NA NA +7:76358722 7:65219999 YWHAG--INTS4P1 BS_68KX6A42 ARRIBA frameshift 91 22 high [INTRACHROMOSOMAL[chr7:11.09Mb]],deletion/5'-5' YWHAG NA INTS4P1 NA NA NA NA NA NA +7:149239802 7:5287809 ZNF212--SLC29A4 BS_68KX6A42 ARRIBA frameshift 3 3 high [INTRACHROMOSOMAL[chr7:143.93Mb]],duplication ZNF212 NA SLC29A4 NA TranscriptionFactor NA NA NA NA +7:149239802 7:5287806 ZNF212--SLC29A4 BS_68KX6A42 ARRIBA frameshift 1 3 high [INTRACHROMOSOMAL[chr7:143.93Mb]],duplication ZNF212 NA SLC29A4 NA TranscriptionFactor NA NA NA NA +7:149240056 7:5287809 ZNF212--SLC29A4 BS_68KX6A42 ARRIBA other 1 3 high [INTRACHROMOSOMAL[chr7:143.93Mb]],duplication ZNF212 NA SLC29A4 NA TranscriptionFactor NA NA NA NA +7:100065895 7:116970509 ZNF3--ST7-OT4 BS_68KX6A42 ARRIBA other 4 1 medium [INTRACHROMOSOMAL[chr7:16.87Mb]],inversion ZNF3 NA ST7-OT4 NA TranscriptionFactor NA NA NA NA +7:30284499 7:64227254 ZNRF2--ZNF735(6746)/ZNF679(1220) BS_68KX6A42 ARRIBA other 6 0 low [],inversion ZNRF2 NA ZNF735 ZNF679 NA TranscriptionFactor NA TranscriptionFactor NA +7:100065895 7:116970509 ZSCAN21--ST7 BS_68KX6A42 ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr7:16.89Mb]],inversion/3'-3' ZSCAN21 NA ST7 NA TranscriptionFactor TumorSuppressorGene NA NA NA +7:100065895 7:116970509 ZSCAN21--ST7-OT4 BS_68KX6A42 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr7:16.89Mb]],inversion/3'-3' ZSCAN21 NA ST7-OT4 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_6M2053M0 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_6M2053M0 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:102858013 8:107918170 AZIN1--RSPO2 BS_6M2053M0 ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr8:5.01Mb]],inversion/5'-5' AZIN1 NA RSPO2 NA NA CosmicCensus, Oncogene NA NA NA +8:145055037 8:63307635 C8orf33--RN7SL135P(72724)/AC011124.1(77204) BS_6M2053M0 ARRIBA other 2 1 medium [],duplication C8orf33 NA RN7SL135P AC011124.1 NA NA NA NA NA +14:49633287 4:53073482 DNAAF2--SCFD2 BS_6M2053M0 ARRIBA frameshift 3 1 high [INTERCHROMOSOMAL[chr14--chr4]],translocation/5'-5' DNAAF2 NA SCFD2 NA NA NA NA NA NA +11:92524948 11:90923860 FAT3--DISC1FP1(8808)/AP001002.3(48456) BS_6M2053M0 ARRIBA frameshift 2 0 medium [],inversion FAT3 NA DISC1FP1 AP001002.3 CosmicCensus NA NA NA NA +7:28180463 10:33816351 JAZF1--LINC00838(43693)/RPL23P11(47962) BS_6M2053M0 ARRIBA frameshift 3 1 high [],translocation JAZF1 NA LINC00838 RPL23P11 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +17:58511429 17:65153422 MTMR4--RGS9 BS_6M2053M0 STARFUSION frameshift 4 0 NA [INTRACHROMOSOMAL[chr17:6.58Mb]] MTMR4 NA RGS9 NA NA NA NA NA NA +17:58511429 17:65153422 MTMR4--RGS9 BS_6M2053M0 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr17:6.58Mb]],inversion MTMR4 NA RGS9 NA NA NA NA NA NA +17:58508681 17:65153422 MTMR4--RGS9 BS_6M2053M0 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr17:6.58Mb]],inversion MTMR4 NA RGS9 NA NA NA NA NA NA +11:112961664 11:107630417 NCAM1--ELMOD1 BS_6M2053M0 STARFUSION frameshift 5 5 NA [INTRACHROMOSOMAL[chr11:5.29Mb]] NCAM1 NA ELMOD1 NA NA NA NA NA NA +11:112961664 11:107630417 NCAM1--ELMOD1 BS_6M2053M0 ARRIBA frameshift 5 5 high [INTRACHROMOSOMAL[chr11:5.29Mb]],duplication NCAM1 NA ELMOD1 NA NA NA NA NA NA +8:100709133 8:115267667 PABPC1--CARSP2(475738)/TRPS1(140829) BS_6M2053M0 ARRIBA frameshift 4 2 medium [],inversion PABPC1 NA CARSP2 TRPS1 CosmicCensus NA NA TranscriptionFactor NA +1:214011715 11:86999876 PROX1--AP001528.1 BS_6M2053M0 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr1--chr11]],translocation PROX1 NA AP001528.1 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA +8:18572528 8:18126840 PSD3--AC124242.1(30446)/NAT1(43637) BS_6M2053M0 ARRIBA frameshift 2 1 high [],inversion PSD3 NA AC124242.1 NAT1 NA NA NA Oncogene NA +17:65163089 11:112472264 RGS9--AP003063.1 BS_6M2053M0 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr17--chr11]],translocation/5'-5' RGS9 NA AP003063.1 NA NA NA NA NA NA +6:166626921 6:165302296 RPS6KA2--C6orf118 BS_6M2053M0 STARFUSION frameshift 3 1 NA [INTRACHROMOSOMAL[chr6:1.10Mb]] RPS6KA2 NA C6orf118 NA TumorSuppressorGene, Kinase NA NA NA NA +6:166626921 6:165302296 RPS6KA2--C6orf118 BS_6M2053M0 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr6:1.10Mb]],deletion RPS6KA2 NA C6orf118 NA TumorSuppressorGene, Kinase NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_6M2053M0 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:30073877 8:15623080 SARAF--TUSC3 BS_6M2053M0 STARFUSION in-frame 10 1 NA [INTRACHROMOSOMAL[chr8:14.30Mb]] SARAF NA TUSC3 NA NA NA NA NA NA +8:30073877 8:15623080 SARAF--TUSC3 BS_6M2053M0 ARRIBA in-frame 8 1 high [INTRACHROMOSOMAL[chr8:14.30Mb]],inversion SARAF NA TUSC3 NA NA NA NA NA NA +14:30634037 14:30672011 SCFD1--SCFD1 BS_6M2053M0 ARRIBA frameshift 5 2 medium [SELFIE,INTRACHROMOSOMAL[chr14:0.11Mb]],inversion/3'-3' SCFD1 NA SCFD1 NA NA NA NA NA NA +17:20009424 11:106107391 SPECC1--AP001001.1(5416)/AP001001.2(5068) BS_6M2053M0 ARRIBA other 2 0 medium [],translocation SPECC1 NA AP001001.1 AP001001.2 CosmicCensus, Oncogene NA NA NA NA +17:59061093 11:104947689 TRIM37--CASP4 BS_6M2053M0 ARRIBA frameshift 2 2 medium [INTERCHROMOSOMAL[chr17--chr11]],translocation TRIM37 NA CASP4 NA Oncogene NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_7WM3MNZ0 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_7WM3MNZ0 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +4:78826155 4:66863117 BMP2K--RPS23P3(431596)/RNU6-699P(34145) BS_7WM3MNZ0 ARRIBA frameshift 2 0 high [],inversion BMP2K NA RPS23P3 RNU6-699P Kinase NA NA NA NA +2:187387666 2:189474717 CALCRL--WDR75 BS_7WM3MNZ0 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:1.99Mb]],inversion CALCRL NA WDR75 NA NA NA NA NA NA +2:187431297 2:189448379 CALCRL--WDR75 BS_7WM3MNZ0 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:1.99Mb]],inversion CALCRL NA WDR75 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_7WM3MNZ0 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +19:20497214 11:106107391 AC008554.1--AP001001.1(5416)/AP001001.2(5068) BS_8ZY4GST0 ARRIBA other 10 6 high [],translocation AC008554.1 NA AP001001.1 AP001001.2 NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_8ZY4GST0 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_8ZY4GST0 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +22:19447378 22:17097062 C22orf39--IL17RA BS_8ZY4GST0 STARFUSION in-frame 3 4 NA [INTRACHROMOSOMAL[chr22:2.24Mb]] C22orf39 NA IL17RA NA NA NA NA NA NA +22:19447378 22:17097062 C22orf39--IL17RA BS_8ZY4GST0 ARRIBA in-frame 3 3 high [INTRACHROMOSOMAL[chr22:2.24Mb]],inversion C22orf39 NA IL17RA NA NA NA NA NA NA +11:3057343 11:1436040 CARS--BRSK2 BS_8ZY4GST0 STARFUSION in-frame 7 0 NA [INTRACHROMOSOMAL[chr11:1.54Mb]] CARS NA BRSK2 NA CosmicCensus, Oncogene Kinase, Kinase NA NA NA +11:3057343 11:1436040 CARS--BRSK2 BS_8ZY4GST0 ARRIBA in-frame 7 0 medium [INTRACHROMOSOMAL[chr11:1.54Mb]],inversion CARS NA BRSK2 NA CosmicCensus, Oncogene Kinase, Kinase NA NA NA +17:79837837 19:10681993 CBX4--ILF3 BS_8ZY4GST0 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr17--chr19]],translocation CBX4 NA ILF3 NA Oncogene NA NA NA NA +22:17159474 22:19351446 HDHD5-AS1--C22orf39 BS_8ZY4GST0 STARFUSION other 5 7 NA [INTRACHROMOSOMAL[chr22:2.19Mb]] HDHD5-AS1 NA C22orf39 NA NA NA NA NA NA +22:17159551 22:19351446 HDHD5-AS1--C22orf39 BS_8ZY4GST0 STARFUSION other 5 7 NA [INTRACHROMOSOMAL[chr22:2.19Mb]] HDHD5-AS1 NA C22orf39 NA NA NA NA NA NA +22:17159837 22:19351446 HDHD5-AS1--C22orf39 BS_8ZY4GST0 STARFUSION other 1 7 NA [INTRACHROMOSOMAL[chr22:2.19Mb]] HDHD5-AS1 NA C22orf39 NA NA NA NA NA NA +22:17159551 22:19351446 HDHD5-AS1--C22orf39 BS_8ZY4GST0 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr22:2.19Mb]],inversion HDHD5-AS1 NA C22orf39 NA NA NA NA NA NA +22:17159474 22:19351446 HDHD5-AS1--HIRA BS_8ZY4GST0 STARFUSION other 5 12 NA [INTRACHROMOSOMAL[chr22:2.17Mb]] HDHD5-AS1 NA HIRA NA NA TumorSuppressorGene NA NA NA +22:17159551 22:19351446 HDHD5-AS1--HIRA BS_8ZY4GST0 STARFUSION other 5 12 NA [INTRACHROMOSOMAL[chr22:2.17Mb]] HDHD5-AS1 NA HIRA NA NA TumorSuppressorGene NA NA NA +22:17159551 22:19351446 HDHD5-AS1--HIRA BS_8ZY4GST0 ARRIBA other 5 11 high [INTRACHROMOSOMAL[chr22:2.17Mb]],inversion HDHD5-AS1 NA HIRA NA NA TumorSuppressorGene NA NA NA +22:17159837 22:19351446 HDHD5-AS1--HIRA BS_8ZY4GST0 ARRIBA other 1 11 high [INTRACHROMOSOMAL[chr22:2.17Mb]],inversion HDHD5-AS1 NA HIRA NA NA TumorSuppressorGene NA NA NA +22:19431440 22:17097062 HIRA--IL17RA BS_8ZY4GST0 STARFUSION frameshift 18 13 NA [INTRACHROMOSOMAL[chr22:2.22Mb]] HIRA NA IL17RA NA TumorSuppressorGene NA NA NA NA +22:19447378 22:17097062 HIRA--IL17RA BS_8ZY4GST0 STARFUSION in-frame 3 13 NA [INTRACHROMOSOMAL[chr22:2.22Mb]] HIRA NA IL17RA NA TumorSuppressorGene NA NA NA NA +22:19431440 22:17097062 HIRA--IL17RA BS_8ZY4GST0 ARRIBA frameshift 15 11 high [INTRACHROMOSOMAL[chr22:2.22Mb]],inversion HIRA NA IL17RA NA TumorSuppressorGene NA NA NA NA +22:19447378 22:17097062 HIRA--IL17RA BS_8ZY4GST0 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr22:2.22Mb]],inversion HIRA NA IL17RA NA TumorSuppressorGene NA NA NA NA +4:56049299 4:53425872 KIAA1211--FIP1L1 BS_8ZY4GST0 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr4:2.59Mb]],duplication KIAA1211 NA FIP1L1 NA NA CosmicCensus, Oncogene NA NA NA +4:17961903 4:52920870 LCORL--SCFD2 BS_8ZY4GST0 ARRIBA in-frame 2 1 medium [INTRACHROMOSOMAL[chr4:34.85Mb]],duplication LCORL NA SCFD2 NA TranscriptionFactor NA NA NA NA +4:53557874 4:54695512 LNX1--KIT BS_8ZY4GST0 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.96Mb]],inversion LNX1 NA KIT NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +4:53476753 4:54723584 LNX1--KIT BS_8ZY4GST0 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.96Mb]],inversion LNX1 NA KIT NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +19:3463202 11:105752981 NFIC--GRIA4 BS_8ZY4GST0 STARFUSION other 11 6 NA [INTERCHROMOSOMAL[chr19--chr11]] NFIC NA GRIA4 NA Oncogene, TranscriptionFactor NA NA NA NA +19:3463202 11:105752981 NFIC--GRIA4 BS_8ZY4GST0 ARRIBA other 10 6 high [INTERCHROMOSOMAL[chr19--chr11]],translocation NFIC NA GRIA4 NA Oncogene, TranscriptionFactor NA NA NA NA +4:54229415 4:53425872 PDGFRA--FIP1L1 BS_8ZY4GST0 ARRIBA other 1 0 low [chimerdb_pubmed,ChimerKB,ChimerSeq,ChimerPub,INTRACHROMOSOMAL[chr4:0.77Mb]],duplication PDGFRA NA FIP1L1 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus, Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_8ZY4GST0 ARRIBA other 6 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +19:4400324 11:106234960 SH3GL1--AP001001.2(102844)/AP002001.1(15059) BS_8ZY4GST0 ARRIBA frameshift 3 0 high [],translocation SH3GL1 NA AP001001.2 AP002001.1 CosmicCensus, Oncogene NA NA NA NA +7:117119720 7:116699071 ST7--MET BS_8ZY4GST0 STARFUSION in-frame 13 7 NA [FA_CancerSupp,CCLE,ChimerSeq,YOSHIHARA_TCGA,INTRACHROMOSOMAL[chr7:0.15Mb]] ST7 NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:117119720 7:116699071 ST7--MET BS_8ZY4GST0 ARRIBA in-frame 11 5 high [FA_CancerSupp,CCLE,ChimerSeq,YOSHIHARA_TCGA,INTRACHROMOSOMAL[chr7:0.15Mb]],duplication ST7 NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +4:55396396 4:54014119 TMEM165--CHIC2 BS_8ZY4GST0 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr4:1.33Mb]],inversion TMEM165 NA CHIC2 NA NA CosmicCensus, Oncogene NA NA NA +4:52659115 4:53116878 USP46--SCFD2 BS_8ZY4GST0 ARRIBA frameshift 1 1 low [FA_CancerSupp,INTRACHROMOSOMAL[chr4:0.21Mb]],inversion/5'-5' USP46 NA SCFD2 NA NA NA NA NA NA +4:52601857 4:52920870 USP46--SCFD2 BS_8ZY4GST0 ARRIBA frameshift 2 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr4:0.21Mb]],duplication USP46 NA SCFD2 NA NA NA NA NA NA +4:52626018 4:52885866 USP46--SCFD2 BS_8ZY4GST0 ARRIBA in-frame 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr4:0.21Mb]],duplication USP46 NA SCFD2 NA NA NA NA NA NA +15:42208081 15:44570658 VPS39--SPG11 BS_8ZY4GST0 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr15:2.35Mb]],duplication VPS39 NA SPG11 NA NA NA NA NA NA +12:130628322 12:123735531 AC095350.2--ATP6V0A2 BS_BMMY0H73 STARFUSION other 106 54 NA [INTRACHROMOSOMAL[chr12:6.87Mb]] AC095350.2 NA ATP6V0A2 NA NA NA NA NA NA +12:130628322 12:123735531 AC095350.2--ATP6V0A2 BS_BMMY0H73 ARRIBA other 104 51 high [INTRACHROMOSOMAL[chr12:6.87Mb]],inversion AC095350.2 NA ATP6V0A2 NA NA NA NA NA NA +2:206445524 2:176527753 ADAM23--AC017048.2 BS_BMMY0H73 STARFUSION other 10 8 NA [INTRACHROMOSOMAL[chr2:29.91Mb]] ADAM23 NA AC017048.2 NA Oncogene NA NA NA NA +2:206445524 2:176525359 ADAM23--AC017048.2 BS_BMMY0H73 STARFUSION other 5 8 NA [INTRACHROMOSOMAL[chr2:29.91Mb]] ADAM23 NA AC017048.2 NA Oncogene NA NA NA NA +2:206445524 2:176527753 ADAM23--AC017048.2 BS_BMMY0H73 ARRIBA frameshift 10 8 high [INTRACHROMOSOMAL[chr2:29.91Mb]],inversion ADAM23 NA AC017048.2 NA Oncogene NA NA NA NA +2:206445524 2:176525359 ADAM23--AC017048.2 BS_BMMY0H73 ARRIBA frameshift 5 5 high [INTRACHROMOSOMAL[chr2:29.91Mb]],inversion ADAM23 NA AC017048.2 NA Oncogene NA NA NA NA +1:155983107 1:156334918 ARHGEF2--CCT3 BS_BMMY0H73 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr1:0.30Mb]],duplication ARHGEF2 NA CCT3 NA Oncogene NA NA NA TCGAFusion +12:123722448 12:121020320 ATP6V0A2--OASL BS_BMMY0H73 ARRIBA frameshift 9 7 high [INTRACHROMOSOMAL[chr12:2.67Mb]],duplication/5'-5' ATP6V0A2 NA OASL NA NA NA NA NA NA +21:41168575 21:41442746 BACE2--AP001610.1 BS_BMMY0H73 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr21:0.16Mb]],inversion BACE2 NA AP001610.1 NA NA NA NA NA NA +10:58785080 2:143351396 BICC1--AC096558.1 BS_BMMY0H73 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr10--chr2]],translocation BICC1 NA AC096558.1 NA NA NA NA NA NA +17:67920143 17:73286612 BPTF--CDC42EP4 BS_BMMY0H73 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr17:5.30Mb]],inversion BPTF NA CDC42EP4 NA TranscriptionFactor NA NA NA NA +17:32490245 17:72307589 CDK5R1--SOX9-AS1(70386)/LINC00511(15534) BS_BMMY0H73 ARRIBA other 4 2 medium [],deletion CDK5R1 NA SOX9-AS1 LINC00511 Oncogene NA NA NA NA +16:80804150 10:58037310 CDYL2--MRPS35P3(54317)/AC026884.1(69113) BS_BMMY0H73 ARRIBA frameshift 1 1 high [],translocation CDYL2 NA MRPS35P3 AC026884.1 NA NA NA NA NA +1:160339909 1:156596131 COPA--GPATCH4 BS_BMMY0H73 STARFUSION frameshift 12 7 NA [INTRACHROMOSOMAL[chr1:3.69Mb]] COPA NA GPATCH4 NA NA NA NA NA NA +1:160339909 1:156596478 COPA--GPATCH4 BS_BMMY0H73 STARFUSION in-frame 10 7 NA [INTRACHROMOSOMAL[chr1:3.69Mb]] COPA NA GPATCH4 NA NA NA NA NA NA +1:160339909 1:156596131 COPA--GPATCH4 BS_BMMY0H73 ARRIBA frameshift 11 5 high [INTRACHROMOSOMAL[chr1:3.69Mb]],deletion COPA NA GPATCH4 NA NA NA NA NA NA +1:160339909 1:156596478 COPA--GPATCH4 BS_BMMY0H73 ARRIBA in-frame 9 6 high [INTRACHROMOSOMAL[chr1:3.69Mb]],deletion COPA NA GPATCH4 NA NA NA NA NA NA +1:160336635 1:156597744 COPA--GPATCH4 BS_BMMY0H73 ARRIBA other 6 11 medium [INTRACHROMOSOMAL[chr1:3.69Mb]],deletion COPA NA GPATCH4 NA NA NA NA NA NA +2:207530134 2:209653142 CREB1--MAP2 BS_BMMY0H73 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:1.82Mb]],deletion CREB1 NA MAP2 NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene NA NA NA +1:162719145 1:155131339 DDR2--EFNA1 BS_BMMY0H73 STARFUSION frameshift 9 1 NA [INTRACHROMOSOMAL[chr1:7.50Mb]] DDR2 NA EFNA1 NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA NA +1:162719145 1:155131339 DDR2--EFNA1 BS_BMMY0H73 ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr1:7.50Mb]],duplication DDR2 NA EFNA1 NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA NA +1:197715031 1:145942853 DENND1B--LIX1L BS_BMMY0H73 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:51.55Mb]],deletion DENND1B NA LIX1L NA NA NA NA NA NA +12:123774264 12:58410621 DNAH10--AC025578.1(15483)/AC020637.1(133503) BS_BMMY0H73 ARRIBA frameshift 3 1 high [],inversion DNAH10 NA AC025578.1 AC020637.1 NA NA NA NA NA +12:123774264 12:62830736 DNAH10--PPM1H BS_BMMY0H73 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr12:60.83Mb]],inversion DNAH10 NA PPM1H NA NA NA NA NA NA +1:21233558 1:6349866 ECE1--ACOT7 BS_BMMY0H73 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr1:14.82Mb]],deletion ECE1 NA ACOT7 NA NA NA NA NA NA +12:123630169 12:125905780 EIF2B1--AC005252.1(4297)/LINC00939(52908) BS_BMMY0H73 ARRIBA frameshift 325 87 high [],duplication EIF2B1 NA AC005252.1 LINC00939 NA NA NA NA NA +12:123630169 12:125889151 EIF2B1--AC005252.3(28032)/AC005252.1(11270) BS_BMMY0H73 ARRIBA frameshift 27 8 high [],duplication EIF2B1 NA AC005252.3 AC005252.1 NA NA NA NA NA +5:74640307 7:92110122 ENC1--AKAP9 BS_BMMY0H73 STARFUSION other 6 4 NA [INTERCHROMOSOMAL[chr5--chr7]] ENC1 NA AKAP9 NA Oncogene CosmicCensus, Oncogene NA NA NA +5:74640307 7:92110122 ENC1--AKAP9 BS_BMMY0H73 ARRIBA other 5 3 high [INTERCHROMOSOMAL[chr5--chr7]],translocation ENC1 NA AKAP9 NA Oncogene CosmicCensus, Oncogene NA NA NA +3:115791158 3:116354210 GAP43(69668)/LSAMP(11205)--LSAMP-AS1 BS_BMMY0H73 ARRIBA other 3 1 medium [],deletion GAP43 LSAMP LSAMP-AS1 NA NA NA TumorSuppressorGene NA NA +12:47794760 2:136454938 HDAC7--RN7SKP141(64269)/SMC4P1(89774) BS_BMMY0H73 ARRIBA frameshift 6 2 high [],translocation HDAC7 NA RN7SKP141 SMC4P1 NA NA NA NA NA +5:74639918 7:92109238 HEXB--AKAP9 BS_BMMY0H73 ARRIBA other 1 2 medium [INTERCHROMOSOMAL[chr5--chr7]],translocation/3'-3' HEXB NA AKAP9 NA NA CosmicCensus, Oncogene NA NA NA +X:28789425 2:233744439 IL1RAPL1--UGT1A7 BS_BMMY0H73 ARRIBA frameshift 6 2 high [INTERCHROMOSOMAL[chrX--chr2]],translocation/5'-5' IL1RAPL1 NA UGT1A7 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A1 BS_BMMY0H73 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A1 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A1 BS_BMMY0H73 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A1 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A10 BS_BMMY0H73 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A10 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A10 BS_BMMY0H73 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A10 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A3 BS_BMMY0H73 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A3 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A3 BS_BMMY0H73 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A3 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A4 BS_BMMY0H73 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A4 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A4 BS_BMMY0H73 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A4 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A5 BS_BMMY0H73 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A5 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A5 BS_BMMY0H73 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A5 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A6 BS_BMMY0H73 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A6 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A6 BS_BMMY0H73 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A6 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A7 BS_BMMY0H73 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A7 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A7 BS_BMMY0H73 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A7 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A8 BS_BMMY0H73 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A8 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A8 BS_BMMY0H73 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A8 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A9 BS_BMMY0H73 STARFUSION in-frame 76 19 NA [INTERCHROMOSOMAL[chrX--chr2]] KLHL15 NA UGT1A9 NA NA NA NA NA NA +X:24005989 2:233767034 KLHL15--UGT1A9 BS_BMMY0H73 ARRIBA in-frame 74 19 high [INTERCHROMOSOMAL[chrX--chr2]],translocation KLHL15 NA UGT1A9 NA NA NA NA NA NA +11:24738302 11:50207744 LUZP2--AC109635.5(17303)/AC109635.1(38810) BS_BMMY0H73 ARRIBA frameshift 4 2 high [],deletion LUZP2 NA AC109635.5 AC109635.1 NA NA NA NA NA +1:156475108 1:154391882 MEF2D--AL162591.2(12609)/AL162591.1(10446) BS_BMMY0H73 ARRIBA frameshift 5 0 high [],deletion MEF2D NA AL162591.2 AL162591.1 Oncogene, TranscriptionFactor NA NA NA NA +1:156475108 1:154364373 MEF2D--ATP8B2(13066)/AL162591.2(12593) BS_BMMY0H73 ARRIBA frameshift 8 1 high [],deletion MEF2D NA ATP8B2 AL162591.2 Oncogene, TranscriptionFactor NA NA NA NA +12:124362126 3:187595246 NCOR2--LINC02041(145796)/SST(73660) BS_BMMY0H73 ARRIBA frameshift 5 0 high [],translocation NCOR2 NA LINC02041 SST CosmicCensus, Oncogene NA NA NA NA +2:240011617 2:226995431 NDUFA10--RHBDD1 BS_BMMY0H73 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr2:12.89Mb]],inversion NDUFA10 NA RHBDD1 NA NA NA NA NA NA +2:240018553 2:226995431 NDUFA10--RHBDD1 BS_BMMY0H73 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:12.89Mb]],inversion NDUFA10 NA RHBDD1 NA NA NA NA NA NA +9:84752085 9:84744973 NTRK2--NTRK2 BS_BMMY0H73 ARRIBA in-frame 31 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.36Mb]],duplication/non-canonical_splicing NTRK2 NA NTRK2 NA Oncogene, Kinase Oncogene, Kinase NA NA NA +10:117374356 10:118015110 PDZD8--RAB11FIP2 BS_BMMY0H73 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr10:0.63Mb]],duplication PDZD8 NA RAB11FIP2 NA NA NA NA NA NA +10:117340980 10:118015110 PDZD8--RAB11FIP2 BS_BMMY0H73 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr10:0.63Mb]],duplication PDZD8 NA RAB11FIP2 NA NA NA NA NA NA +1:145916817 1:147650739 PEX11B--ACP6 BS_BMMY0H73 ARRIBA frameshift 23 18 high [INTRACHROMOSOMAL[chr1:1.71Mb]],inversion/5'-5' PEX11B NA ACP6 NA NA NA NA NA NA +1:145913704 1:147625382 PEX11B--BCL9 BS_BMMY0H73 ARRIBA other 20 7 medium [INTRACHROMOSOMAL[chr1:1.62Mb]],inversion PEX11B NA BCL9 NA NA CosmicCensus, Oncogene NA NA NA +6:35347150 6:13053365 PPARD--PHACTR1 BS_BMMY0H73 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr6:22.05Mb]],duplication PPARD NA PHACTR1 NA Oncogene, TranscriptionFactor NA NA NA NA +12:62832114 12:58410621 PPM1H--AC025578.1(15483)/AC020637.1(133503) BS_BMMY0H73 ARRIBA frameshift 3 2 high [],deletion PPM1H NA AC025578.1 AC020637.1 NA NA NA NA NA +1:156782329 1:155395553 PRCC--ASH1L BS_BMMY0H73 ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr1:1.19Mb]],inversion PRCC NA ASH1L NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA +12:42567064 10:71473616 PRICKLE1--CDH23 BS_BMMY0H73 ARRIBA other 1 1 medium [INTERCHROMOSOMAL[chr12--chr10]],translocation/5'-5' PRICKLE1 NA CDH23 NA TumorSuppressorGene NA NA NA NA +12:42589465 10:71510010 PRICKLE1--CDH23-AS1 BS_BMMY0H73 ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr12--chr10]],translocation PRICKLE1 NA CDH23-AS1 NA TumorSuppressorGene NA NA NA NA +12:55974139 12:55760640 RAB5B--AC023055.1 BS_BMMY0H73 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr12:0.15Mb]],inversion RAB5B NA AC023055.1 NA NA NA NA NA NA +12:55974139 12:55760640 RAB5B--SARNP BS_BMMY0H73 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr12:0.16Mb]],inversion RAB5B NA SARNP NA NA Oncogene NA NA NA +2:226839627 2:224916784 RHBDD1--DOCK10 BS_BMMY0H73 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:1.79Mb]],inversion RHBDD1 NA DOCK10 NA NA NA NA NA NA +3:101513091 3:101590215 SENP7--PCNP BS_BMMY0H73 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:0.06Mb],LOCAL_INVERSION:-:+:[60854]],inversion SENP7 NA PCNP NA NA NA NA NA NA +11:62831954 11:62839659 STX5--WDR74 BS_BMMY0H73 STARFUSION other 22 2 NA [YOSHIHARA_TCGA,CCLE,ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[254]] STX5 NA WDR74 NA NA NA NA NA TCGAFusion +11:62831954 11:62839867 STX5--WDR74 BS_BMMY0H73 STARFUSION other 7 2 NA [YOSHIHARA_TCGA,CCLE,ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[254]] STX5 NA WDR74 NA NA NA NA NA TCGAFusion +11:62831954 11:62839659 STX5--WDR74 BS_BMMY0H73 ARRIBA other 22 1 high [YOSHIHARA_TCGA,CCLE,ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[254]],duplication STX5 NA WDR74 NA NA NA NA NA TCGAFusion +11:62831954 11:62839867 STX5--WDR74 BS_BMMY0H73 ARRIBA other 7 0 medium [YOSHIHARA_TCGA,CCLE,ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[254]],duplication STX5 NA WDR74 NA NA NA NA NA TCGAFusion +11:62831954 11:62839706 STX5--WDR74 BS_BMMY0H73 ARRIBA other 2 0 low [YOSHIHARA_TCGA,CCLE,ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr11:0.00Mb],LOCAL_REARRANGEMENT:-:[254]],duplication STX5 NA WDR74 NA NA NA NA NA TCGAFusion +6:33313217 6:28449306 TAPBP--COX11P1(1499)/Z98745.1(6342) BS_BMMY0H73 ARRIBA frameshift 15 4 high [],deletion TAPBP NA COX11P1 Z98745.1 NA NA NA NA NA +6:33313217 6:28504498 TAPBP--GPX6 BS_BMMY0H73 STARFUSION frameshift 24 13 NA [INTRACHROMOSOMAL[chr6:4.77Mb]] TAPBP NA GPX6 NA NA NA NA NA NA +6:33313217 6:28504498 TAPBP--GPX6 BS_BMMY0H73 ARRIBA frameshift 24 11 high [INTRACHROMOSOMAL[chr6:4.77Mb]],deletion TAPBP NA GPX6 NA NA NA NA NA NA +6:33313694 6:28504498 TAPBP--GPX6 BS_BMMY0H73 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:4.77Mb]],deletion TAPBP NA GPX6 NA NA NA NA NA NA +6:33313217 6:28477890 TAPBP--Z98745.1(21749)/GPX6(25406) BS_BMMY0H73 ARRIBA frameshift 7 3 high [],deletion TAPBP NA Z98745.1 GPX6 NA NA NA NA NA +8:544650 8:120001525 TDRP--DEPTOR BS_BMMY0H73 STARFUSION frameshift 12 4 NA [INTRACHROMOSOMAL[chr8:119.33Mb]] TDRP NA DEPTOR NA NA NA NA NA NA +8:544650 8:120001525 TDRP--DEPTOR BS_BMMY0H73 ARRIBA frameshift 7 4 high [INTRACHROMOSOMAL[chr8:119.33Mb]],inversion TDRP NA DEPTOR NA NA NA NA NA NA +18:218886 18:2846768 THOC1--AP001011.1(13703)/EMILIN2(262) BS_BMMY0H73 ARRIBA frameshift 2 0 high [],duplication THOC1 NA AP001011.1 EMILIN2 NA NA NA NA NA +18:218886 2:136420347 THOC1--RN7SKP141(29678)/SMC4P1(124365) BS_BMMY0H73 ARRIBA frameshift 2 0 medium [],translocation THOC1 NA RN7SKP141 SMC4P1 NA NA NA NA NA +12:63805872 12:62914338 TMEM5--PPM1H BS_BMMY0H73 ARRIBA other 2 4 medium [INTRACHROMOSOMAL[chr12:0.84Mb]],duplication/5'-5' TMEM5 NA PPM1H NA NA NA NA NA NA +3:171369620 6:184140 TNIK--AL035696.3 BS_BMMY0H73 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr3--chr6]],translocation/5'-5' TNIK NA AL035696.3 NA Kinase, Kinase NA NA NA NA +6:7904574 6:6033621 TXNDC5--NRN1(26016)/F13A1(110464) BS_BMMY0H73 ARRIBA frameshift 2 1 medium [],deletion TXNDC5 NA NRN1 F13A1 NA NA NA NA NA +18:9950568 18:9775278 VAPA--RAB31 BS_BMMY0H73 ARRIBA in-frame 1 0 low [Klijn_CellLines,CCLE,GTEx,INTRACHROMOSOMAL[chr18:0.05Mb],LOCAL_REARRANGEMENT:+:[51451]],duplication VAPA NA RAB31 NA NA NA NA NA TCGAFusion +18:9914335 18:9845582 VAPA--RAB31 BS_BMMY0H73 ARRIBA frameshift 1 0 low [Klijn_CellLines,CCLE,GTEx,INTRACHROMOSOMAL[chr18:0.05Mb],LOCAL_REARRANGEMENT:+:[51451]],duplication VAPA NA RAB31 NA NA NA NA NA TCGAFusion +7:150047609 7:149891301 AC092666.2--AC092681.1 BS_BYCX6VK1 STARFUSION other 14 2 NA [INTRACHROMOSOMAL[chr7:0.14Mb]] AC092666.2 NA AC092681.1 NA NA NA NA NA NA +19:10087300 19:8438388 C19orf66--MARCH2 BS_BYCX6VK1 ARRIBA in-frame 2 0 medium [INTRACHROMOSOMAL[chr19:1.65Mb]],duplication C19orf66 NA MARCH2 NA NA NA NA NA NA +5:151664087 1:203179877 SPARC--CHI3L1 BS_BYCX6VK1 STARFUSION frameshift 1 8 NA [INTERCHROMOSOMAL[chr5--chr1]] SPARC NA CHI3L1 NA TumorSuppressorGene NA NA NA NA +8:106060381 8:106604782 ZFPM2-AS1--OXR1 BS_BYCX6VK1 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr8:0.30Mb]],inversion ZFPM2-AS1 NA OXR1 NA NA NA NA NA NA +9:41272915 9:63817578 AL845472.1--CR786580.1(3419)/DUX4L50(170) BS_C83TK159 ARRIBA other 5 0 low [],inversion AL845472.1 NA CR786580.1 DUX4L50 NA NA NA NA NA +11:926088 13:60024741 AP2A2--DIAPH3 BS_C83TK159 ARRIBA frameshift 7 0 medium [INTERCHROMOSOMAL[chr11--chr13]],translocation/5'-5' AP2A2 NA DIAPH3 NA NA NA NA NA NA +11:926088 13:60020921 AP2A2--DIAPH3-AS1 BS_C83TK159 STARFUSION other 40 4 NA [INTERCHROMOSOMAL[chr11--chr13]] AP2A2 NA DIAPH3-AS1 NA NA NA NA NA NA +11:926088 13:60020921 AP2A2--DIAPH3-AS1 BS_C83TK159 ARRIBA frameshift 37 4 high [INTERCHROMOSOMAL[chr11--chr13]],translocation AP2A2 NA DIAPH3-AS1 NA NA NA NA NA NA +3:193581707 3:192170656 ATP13A4--FGF12 BS_C83TK159 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:0.63Mb]],deletion ATP13A4 NA FGF12 NA NA Oncogene NA NA NA +11:883200 11:35685259 CHID1--TRIM44 BS_C83TK159 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:34.75Mb]],inversion CHID1 NA TRIM44 NA NA NA NA NA NA +9:31973112 9:32405485 HMGB3P23(327952)/RNA5SP281(320446)--ACO1 BS_C83TK159 ARRIBA other 3 0 medium [],deletion HMGB3P23 RNA5SP281 ACO1 NA NA NA NA NA NA +1:176027572 1:175406777 RFWD2--TNR BS_C83TK159 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.20Mb]],deletion RFWD2 NA TNR NA TumorSuppressorGene Oncogene NA NA NA +1:175528269 1:176046324 TNR--RFWD2 BS_C83TK159 ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.20Mb]],duplication TNR NA RFWD2 NA Oncogene TumorSuppressorGene NA NA TCGAFusion +11:1295645 13:59774823 TOLLIP--DIAPH3 BS_C83TK159 ARRIBA frameshift 5 0 high [INTERCHROMOSOMAL[chr11--chr13]],translocation TOLLIP NA DIAPH3 NA NA NA NA NA NA +11:1295645 13:62703733 TOLLIP--LINC00448 BS_C83TK159 ARRIBA frameshift 5 1 high [INTERCHROMOSOMAL[chr11--chr13]],translocation TOLLIP NA LINC00448 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_EZ3147MX ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_EZ3147MX ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +10:97157818 10:113808086 ARHGAP19-SLIT1--PLEKHS1(24657)/SNORA17(12373) BS_EZ3147MX ARRIBA frameshift 15 3 high [],inversion ARHGAP19-SLIT1 NA PLEKHS1 SNORA17 NA NA NA NA NA +10:101462058 10:1248650 BTRC--ADARB2 BS_EZ3147MX ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr10:99.62Mb]],inversion BTRC NA ADARB2 NA Oncogene Oncogene NA NA NA +10:101462058 10:1242299 BTRC--ADARB2 BS_EZ3147MX ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr10:99.62Mb]],inversion BTRC NA ADARB2 NA Oncogene Oncogene NA NA NA +10:101462058 10:70319317 BTRC--LRRC20 BS_EZ3147MX ARRIBA frameshift 83 30 high [INTRACHROMOSOMAL[chr10:30.97Mb]],duplication/5'-5' BTRC NA LRRC20 NA Oncogene NA NA NA NA +10:101462058 10:70252994 BTRC--NPFFR1 BS_EZ3147MX ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr10:31.07Mb]],duplication/5'-5' BTRC NA NPFFR1 NA Oncogene NA NA NA NA +21:9327298 9:64059259 CR381653.1--AL163540.1(55104)/U6(23170) BS_EZ3147MX ARRIBA other 3 0 medium [],translocation CR381653.1 NA AL163540.1 U6 NA NA NA NA NA +22:11068174 22:10752913 CU104787.1--U2(16630)/CU459211.1(186475) BS_EZ3147MX ARRIBA other 11 0 medium [],inversion CU104787.1 NA U2 CU459211.1 NA NA NA NA NA +16:15884008 16:15904661 FOPNL--FOPNL(16036)/AC130651.1(27036) BS_EZ3147MX ARRIBA frameshift 41 12 high [],duplication FOPNL NA FOPNL AC130651.1 NA NA NA NA NA +10:13807644 10:124150047 FRMD4A--CHST15(56440)/OAT(247256) BS_EZ3147MX ARRIBA other 87 84 high [],duplication FRMD4A NA CHST15 OAT NA NA NA NA NA +10:13810814 10:79098115 FRMD4A--ZMIZ1 BS_EZ3147MX ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr10:64.61Mb]],duplication/5'-5' FRMD4A NA ZMIZ1 NA NA Oncogene NA NA NA +12:26398876 12:58410621 ITPR2--AC025578.1(15483)/AC020637.1(133503) BS_EZ3147MX ARRIBA frameshift 11 6 high [],duplication ITPR2 NA AC025578.1 AC020637.1 NA NA NA NA NA +10:70320058 10:1242299 LRRC20--ADARB2 BS_EZ3147MX ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr10:68.56Mb]],inversion/3'-3' LRRC20 NA ADARB2 NA NA Oncogene NA NA NA +6:111482750 6:111780635 REV3L--FYN BS_EZ3147MX ARRIBA frameshift 3 0 medium [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion +6:111482750 6:111674630 REV3L--FYN BS_EZ3147MX ARRIBA in-frame 3 0 medium [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion +10:133786671 12:26340328 RPL23AP60(7972)--ITPR2 BS_EZ3147MX ARRIBA other 4 0 medium [],translocation RPL23AP60 NA ITPR2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_EZ3147MX ARRIBA other 19 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:97069171 10:113799183 SLIT1--PLEKHS1(15754)/SNORA17(21276) BS_EZ3147MX ARRIBA other 22 18 medium [],inversion SLIT1 NA PLEKHS1 SNORA17 NA NA NA NA NA +9:112817815 9:112617871 SNX30--KIAA1958 BS_EZ3147MX ARRIBA frameshift 17 5 high [YOSHIHARA_TCGA,GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr9:0.08Mb],LOCAL_REARRANGEMENT:+:[81441]],duplication SNX30 NA KIAA1958 NA NA NA NA NA TCGAFusion +9:112817815 9:112645650 SNX30--KIAA1958 BS_EZ3147MX ARRIBA frameshift 1 1 medium [YOSHIHARA_TCGA,GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr9:0.08Mb],LOCAL_REARRANGEMENT:+:[81441]],duplication SNX30 NA KIAA1958 NA NA NA NA NA TCGAFusion +12:103987050 12:125218621 TDG--TMEM132B BS_EZ3147MX ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr12:21.20Mb]],inversion/3'-3' TDG NA TMEM132B NA NA NA NA NA NA +10:79069270 10:124144752 ZMIZ1--CHST15(51145)/OAT(252551) BS_EZ3147MX ARRIBA other 414 212 high [],deletion ZMIZ1 NA CHST15 OAT Oncogene NA NA NA NA +16:16125911 16:79211608 ABCC1--WWOX BS_F0JB4EAK ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr16:61.96Mb]],deletion ABCC1 NA WWOX NA Oncogene TumorSuppressorGene, Oncogene NA NA NA +14:104792598 14:23360281 AKT1--EFS BS_F0JB4EAK ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr14:81.40Mb]],deletion AKT1 NA EFS NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +6:41789336 10:85729614 AL365205.1--GRID1 BS_F0JB4EAK ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr6--chr10]],translocation AL365205.1 NA GRID1 NA NA NA NA NA NA +14:103056999 14:105011935 CDC42BPB--CDCA4 BS_F0JB4EAK ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr14:1.95Mb]],duplication CDC42BPB NA CDCA4 NA Kinase NA NA NA NA +14:21433217 14:104714803 CHD8--INF2 BS_F0JB4EAK STARFUSION other 15 11 NA [INTRACHROMOSOMAL[chr14:83.23Mb]] CHD8 NA INF2 NA NA NA NA NA NA +14:21456032 14:104718795 CHD8--INF2 BS_F0JB4EAK STARFUSION other 2 11 NA [INTRACHROMOSOMAL[chr14:83.23Mb]] CHD8 NA INF2 NA NA NA NA NA NA +14:21433217 14:104714803 CHD8--INF2 BS_F0JB4EAK ARRIBA other 26 9 medium [INTRACHROMOSOMAL[chr14:83.23Mb]],inversion CHD8 NA INF2 NA NA NA NA NA NA +14:21456032 14:104718795 CHD8--INF2 BS_F0JB4EAK ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:83.23Mb]],inversion CHD8 NA INF2 NA NA NA NA NA NA +14:102355768 14:104042069 CINP--TDRD9 BS_F0JB4EAK STARFUSION in-frame 41 13 NA [INTRACHROMOSOMAL[chr14:1.57Mb]] CINP NA TDRD9 NA NA NA NA NA NA +14:102355768 14:104042069 CINP--TDRD9 BS_F0JB4EAK ARRIBA in-frame 34 10 high [INTRACHROMOSOMAL[chr14:1.57Mb]],inversion CINP NA TDRD9 NA NA NA NA NA NA +14:105479828 14:22320532 CRIP2--TRAV41 BS_F0JB4EAK STARFUSION other 5 5 NA [INTRACHROMOSOMAL[chr14:83.15Mb]] CRIP2 NA TRAV41 NA Oncogene NA NA NA NA +14:105479828 14:22320532 CRIP2--TRAV41 BS_F0JB4EAK ARRIBA frameshift 4 5 medium [INTRACHROMOSOMAL[chr14:83.15Mb]],duplication CRIP2 NA TRAV41 NA Oncogene NA NA NA NA +14:105479493 14:22322731 CRIP2--TRAV41(2040)/AC244502.2(10191) BS_F0JB4EAK ARRIBA frameshift 2 1 medium [],duplication CRIP2 NA TRAV41 AC244502.2 Oncogene NA NA NA NA +17:44911672 16:15636342 GFAP--MARF1 BS_F0JB4EAK ARRIBA in-frame 3 0 low [INTERCHROMOSOMAL[chr17--chr16]],translocation GFAP NA MARF1 NA NA NA NA NA NA +9:122159627 9:122313227 NDUFA8--MRRF BS_F0JB4EAK ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr9:0.10Mb]],inversion NDUFA8 NA MRRF NA NA NA NA NA NA +10:6101387 10:11979165 RBM17--UPF2 BS_F0JB4EAK ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr10:5.80Mb]],inversion RBM17 NA UPF2 NA NA NA NA NA NA +6:41789336 10:85729614 TOMM6--GRID1 BS_F0JB4EAK ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr6--chr10]],translocation TOMM6 NA GRID1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_FCDAH728 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_FCDAH728 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:129679928 8:129760589 AC103718.1--GSDMC BS_FCDAH728 ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr8:0.06Mb],LOCAL_REARRANGEMENT:-:[64517]],duplication AC103718.1 NA GSDMC NA NA NA NA NA NA +8:129679928 8:128096518 AC103718.1--PVT1 BS_FCDAH728 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr8:1.58Mb]],inversion AC103718.1 NA PVT1 NA NA Oncogene NA NA NA +1:181651441 1:173864075 CACNA1E--GAS5 BS_FCDAH728 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr1:7.54Mb]],inversion CACNA1E NA GAS5 NA NA TumorSuppressorGene, Oncogene NA NA NA +8:129679928 8:129760589 CCDC26--GSDMC BS_FCDAH728 ARRIBA other 3 1 medium [CCLE,INTRACHROMOSOMAL[chr8:0.07Mb],LOCAL_REARRANGEMENT:-:[67957]],duplication CCDC26 NA GSDMC NA NA NA NA NA NA +8:129480643 8:129760589 CCDC26--GSDMC BS_FCDAH728 ARRIBA other 1 1 medium [CCLE,INTRACHROMOSOMAL[chr8:0.07Mb],LOCAL_REARRANGEMENT:-:[67957]],duplication CCDC26 NA GSDMC NA NA NA NA NA NA +22:39313210 4:84544436 RPL3--RPL3P13 BS_FCDAH728 STARFUSION other 42 0 NA [INTERCHROMOSOMAL[chr22--chr4]] RPL3 NA RPL3P13 NA NA NA NA NA NA +22:39313202 4:84544428 RPL3--RPL3P13 BS_FCDAH728 STARFUSION other 17 0 NA [INTERCHROMOSOMAL[chr22--chr4]] RPL3 NA RPL3P13 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_FCDAH728 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +8:58565066 22:40463286 SDCBP--MKL1 BS_FCDAH728 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr8--chr22]],translocation SDCBP NA MKL1 NA NA Oncogene NA NA NA +19:19096203 1:154207650 SLC25A42--C1orf43 BS_FCDAH728 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr19--chr1]],translocation SLC25A42 NA C1orf43 NA NA NA NA NA NA +17:8161473 17:8804153 VAMP2--PIK3R6 BS_FCDAH728 ARRIBA frameshift 6 0 medium [INTRACHROMOSOMAL[chr17:0.64Mb]],duplication VAMP2 NA PIK3R6 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_G3NN392N ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_G3NN392N ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +18:10550254 21:16071114 NAPG--MIR99AHG BS_G3NN392N ARRIBA frameshift 6 2 high [INTERCHROMOSOMAL[chr18--chr21]],translocation NAPG NA MIR99AHG NA NA NA NA NA NA +3:12590798 3:12763836 RAF1--TMEM40 BS_G3NN392N ARRIBA in-frame 4 6 high [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr3:0.07Mb],LOCAL_REARRANGEMENT:-:[69299]],duplication RAF1 NA TMEM40 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA TCGAFusion +3:12590798 3:12749840 RAF1--TMEM40 BS_G3NN392N ARRIBA frameshift 1 2 high [ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr3:0.07Mb],LOCAL_REARRANGEMENT:-:[69299]],duplication RAF1 NA TMEM40 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_G3NN392N ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +10:1737051 22:21807846 ADARB2--MAPK1 BS_GWSJ4Z9H STARFUSION frameshift 19 1 NA [INTERCHROMOSOMAL[chr10--chr22]] ADARB2 NA MAPK1 NA Oncogene CosmicCensus, Oncogene, Kinase NA NA NA +10:1737051 22:21807846 ADARB2--MAPK1 BS_GWSJ4Z9H ARRIBA frameshift 18 1 high [INTERCHROMOSOMAL[chr10--chr22]],translocation ADARB2 NA MAPK1 NA Oncogene CosmicCensus, Oncogene, Kinase NA NA NA +15:85380798 15:83559253 AKAP13--SH3GL3 BS_GWSJ4Z9H ARRIBA other 9 1 high [INTRACHROMOSOMAL[chr15:1.76Mb]],duplication AKAP13 NA SH3GL3 NA Oncogene NA NA NA NA +4:113174413 16:29082044 ANK2--AC009093.3 BS_GWSJ4Z9H ARRIBA other 9 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation ANK2 NA AC009093.3 NA NA NA NA NA NA +3:138273116 10:2383774 ARMC8--LINC00701(68699)/AC024908.1(62479) BS_GWSJ4Z9H ARRIBA frameshift 3 0 medium [],translocation ARMC8 NA LINC00701 AC024908.1 NA NA NA NA NA +7:112895569 22:32099183 BMT2--SLC5A1 BS_GWSJ4Z9H ARRIBA in-frame 7 3 high [INTERCHROMOSOMAL[chr7--chr22]],translocation BMT2 NA SLC5A1 NA NA NA NA NA NA +7:112895569 22:32104786 BMT2--SLC5A1 BS_GWSJ4Z9H ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr7--chr22]],translocation BMT2 NA SLC5A1 NA NA NA NA NA NA +7:112895569 22:32102022 BMT2--SLC5A1 BS_GWSJ4Z9H ARRIBA frameshift 1 2 high [INTERCHROMOSOMAL[chr7--chr22]],translocation BMT2 NA SLC5A1 NA NA NA NA NA NA +8:144264917 1:153662795 BOP1--ILF2 BS_GWSJ4Z9H ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr8--chr1]],translocation BOP1 NA ILF2 NA Oncogene NA NA NA NA +15:83066751 12:1967910 BTBD1--DCP1B BS_GWSJ4Z9H ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr15--chr12]],translocation BTBD1 NA DCP1B NA NA NA NA NA NA +3:185152628 3:128795360 C3orf70--RAB7A BS_GWSJ4Z9H ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr3:56.26Mb]],inversion C3orf70 NA RAB7A NA NA TumorSuppressorGene NA NA NA +4:54048955 4:54440764 CHIC2--AC098868.1 BS_GWSJ4Z9H ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr4:0.38Mb]],duplication CHIC2 NA AC098868.1 NA CosmicCensus, Oncogene NA NA NA NA +22:26607822 22:45163667 CRYBB1--NUP50-AS1 BS_GWSJ4Z9H ARRIBA frameshift 3 0 low [INTRACHROMOSOMAL[chr22:18.51Mb]],inversion/5'-5' CRYBB1 NA NUP50-AS1 NA NA NA NA NA NA +22:23972219 22:23931955 DDTL--AP000350.2(2381)/AP000350.1(8043) BS_GWSJ4Z9H ARRIBA other 4 0 low [],inversion DDTL NA AP000350.2 AP000350.1 NA NA NA NA NA +9:4299421 9:3395596 GLIS3--RFX3 BS_GWSJ4Z9H ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr9:0.30Mb]],deletion GLIS3 NA RFX3 NA TranscriptionFactor TranscriptionFactor NA NA NA +3:37347296 3:51443903 GOLGA4--DCAF1 BS_GWSJ4Z9H STARFUSION in-frame 11 2 NA [INTRACHROMOSOMAL[chr3:14.03Mb]] GOLGA4 NA DCAF1 NA NA NA NA NA NA +3:37347296 3:51443903 GOLGA4--DCAF1 BS_GWSJ4Z9H ARRIBA in-frame 8 2 high [INTRACHROMOSOMAL[chr3:14.03Mb]],inversion GOLGA4 NA DCAF1 NA NA NA NA NA NA +7:100172087 10:3987182 GPC2--AL513303.1(51369)/MIR6078(3978) BS_GWSJ4Z9H ARRIBA frameshift 4 2 high [],translocation GPC2 NA AL513303.1 MIR6078 NA NA NA NA NA +4:55087607 4:14235515 KDR--AC092546.1 BS_GWSJ4Z9H ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:40.84Mb]],inversion KDR NA AC092546.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +4:55082536 4:54376246 KDR--AC098587.1 BS_GWSJ4Z9H ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr4:0.70Mb]],inversion KDR NA AC098587.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +4:55087607 4:53705811 KDR--AC124017.1 BS_GWSJ4Z9H ARRIBA frameshift 4 2 medium [INTRACHROMOSOMAL[chr4:1.34Mb]],deletion/5'-5' KDR NA AC124017.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +4:55087607 4:54355524 KDR--LINC02283 BS_GWSJ4Z9H ARRIBA frameshift 2 1 low [INTRACHROMOSOMAL[chr4:0.72Mb]],inversion KDR NA LINC02283 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +4:55087607 4:53696139 KDR--LNX1 BS_GWSJ4Z9H ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:1.38Mb]],deletion KDR NA LNX1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +4:55087607 4:55605311 KDR--NMU BS_GWSJ4Z9H ARRIBA frameshift 4 0 medium [INTRACHROMOSOMAL[chr4:0.47Mb]],inversion/5'-5' KDR NA NMU NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +4:54658081 4:55115411 KIT--KDR BS_GWSJ4Z9H ARRIBA in-frame 3 0 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr4:0.34Mb]],inversion KIT NA KDR NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +10:3784913 3:182471134 KLF6--LINC01994 BS_GWSJ4Z9H ARRIBA frameshift 4 2 medium [INTERCHROMOSOMAL[chr10--chr3]],translocation/5'-5' KLF6 NA LINC01994 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +7:116741025 22:21610857 MET--UBE2L3 BS_GWSJ4Z9H ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr7--chr22]],translocation MET NA UBE2L3 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +7:108312665 7:90692223 NRCAM--CDK14 BS_GWSJ4Z9H ARRIBA other 3 1 high [INTRACHROMOSOMAL[chr7:16.94Mb]],deletion/5'-5' NRCAM NA CDK14 NA TumorSuppressorGene, Oncogene Kinase NA NA NA +16:471387 12:14423907 RAB11FIP3--ATF7IP BS_GWSJ4Z9H ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr16--chr12]],translocation RAB11FIP3 NA ATF7IP NA NA Oncogene NA NA NA +1:25338069 17:80880415 RSRP1--RPTOR BS_GWSJ4Z9H ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr1--chr17]],translocation RSRP1 NA RPTOR NA Oncogene NA NA NA NA +1:25267740 17:80880415 RSRP1--RPTOR BS_GWSJ4Z9H ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr1--chr17]],translocation RSRP1 NA RPTOR NA Oncogene NA NA NA NA +4:53352598 4:55630460 SCFD2--NMU BS_GWSJ4Z9H ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr4:2.23Mb]],duplication SCFD2 NA NMU NA NA NA NA NA NA +7:116953691 3:138986241 ST7--FOXL2NB(32790)/PRR23A(19227) BS_GWSJ4Z9H ARRIBA frameshift 2 1 high [],translocation ST7 NA FOXL2NB PRR23A TumorSuppressorGene NA NA NA NA +7:116955153 3:139253145 ST7-OT4_2--MRPS22 BS_GWSJ4Z9H ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr7--chr3]],translocation/5'-5' ST7-OT4_2 NA MRPS22 NA NA NA NA NA NA +7:116955153 3:139253145 ST7-OT4--MRPS22 BS_GWSJ4Z9H ARRIBA other 3 0 high [INTERCHROMOSOMAL[chr7--chr3]],translocation/5'-5' ST7-OT4 NA MRPS22 NA NA NA NA NA NA +15:92444929 12:18434019 ST8SIA2--PIK3C2G BS_GWSJ4Z9H ARRIBA frameshift 3 2 high [INTERCHROMOSOMAL[chr15--chr12]],translocation/5'-5' ST8SIA2 NA PIK3C2G NA NA Kinase NA NA NA +3:136623146 3:195600810 STAG1--APOD(16605)/MUC20P1(14137) BS_GWSJ4Z9H ARRIBA frameshift 4 0 high [],inversion STAG1 NA APOD MUC20P1 CosmicCensus, Oncogene NA NA NA NA +7:73708589 7:93443757 STX1A--CALCR BS_GWSJ4Z9H ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr7:19.70Mb]],duplication STX1A NA CALCR NA NA Oncogene NA NA NA +4:41944926 4:54695654 TMEM33--KIT BS_GWSJ4Z9H ARRIBA frameshift 21 2 high [INTRACHROMOSOMAL[chr4:12.70Mb]],inversion/3'-3' TMEM33 NA KIT NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +22:21592956 7:116755355 UBE2L3--MET BS_GWSJ4Z9H ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr22--chr7]],translocation UBE2L3 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +22:21592956 3:138328652 UBE2L3--NME9 BS_GWSJ4Z9H ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr22--chr3]],translocation/5'-5' UBE2L3 NA NME9 NA NA NA NA NA NA +7:93259632 3:111999247 VPS50--TAGLN3 BS_GWSJ4Z9H ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr7--chr3]],translocation VPS50 NA TAGLN3 NA NA NA NA NA NA +4:113174413 16:29082044 ANK2--AC009093.3 BS_H97S5SQN ARRIBA other 4 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation ANK2 NA AC009093.3 NA NA NA NA NA NA +7:70134571 7:69388333 AUTS2--AC092100.1 BS_H97S5SQN ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr7:0.17Mb]],inversion AUTS2 NA AC092100.1 NA NA NA NA NA NA +7:70134571 7:69172745 AUTS2--RNU6-832P(47369)/AC069280.1(15088) BS_H97S5SQN ARRIBA frameshift 4 1 high [],inversion AUTS2 NA RNU6-832P AC069280.1 NA NA NA NA NA +10:125841330 10:947306 BCCIP--AL359878.2(4563)/AL359878.1(23840) BS_H97S5SQN ARRIBA frameshift 2 0 medium [],duplication BCCIP NA AL359878.2 AL359878.1 NA NA NA NA NA +7:82335135 7:37546703 CACNA2D1--ELMO1(97454)/NECAP1P1(38797) BS_H97S5SQN ARRIBA frameshift 6 1 high [],deletion CACNA2D1 NA ELMO1 NECAP1P1 NA Oncogene NA NA NA +17:20402195 17:60185651 CCDC144CP--USP32 BS_H97S5SQN ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr17:39.78Mb]],inversion CCDC144CP NA USP32 NA NA Oncogene NA NA NA +13:114265240 13:113266747 CDC16--CUL4A BS_H97S5SQN ARRIBA frameshift 4 1 medium [INTRACHROMOSOMAL[chr13:0.97Mb]],inversion/3'-3' CDC16 NA CUL4A NA NA NA NA NA NA +8:4994332 10:47590319 CSMD1--BX547991.1 BS_H97S5SQN ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr8--chr10]],translocation CSMD1 NA BX547991.1 NA TumorSuppressorGene NA NA NA NA +20:34363349 20:34736758 ITCH--NCOA6 BS_H97S5SQN ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.18Mb]],inversion ITCH NA NCOA6 NA NA Oncogene NA NA NA +18:7035987 18:7038950 LAMA1--LAMA1 BS_H97S5SQN ARRIBA in-frame 2 1 low [SELFIE,INTRACHROMOSOMAL[chr18:0.18Mb]],duplication/non-canonical_splicing LAMA1 NA LAMA1 NA NA NA NA NA NA +10:829385 10:131582113 LARP4B--TCERG1L(270392)/LINC01164(190285) BS_H97S5SQN ARRIBA frameshift 1 1 high [],duplication LARP4B NA TCERG1L LINC01164 CosmicCensus NA NA NA NA +7:156605188 7:157216938 LINC01006--UBE3C BS_H97S5SQN ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr7:0.50Mb]],duplication/5'-5' LINC01006 NA UBE3C NA NA NA NA NA NA +7:1957629 7:89882555 MAD1L1--STEAP2-AS1 BS_H97S5SQN ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr7:87.65Mb]],duplication MAD1L1 NA STEAP2-AS1 NA TumorSuppressorGene, Oncogene NA NA NA NA +7:78343778 7:122303858 MAGI2--FEZF1 BS_H97S5SQN ARRIBA frameshift 2 0 high [INTRACHROMOSOMAL[chr7:42.85Mb]],duplication MAGI2 NA FEZF1 NA NA TranscriptionFactor NA NA NA +13:77326474 13:77719532 MYCBP2--SLAIN1 BS_H97S5SQN ARRIBA in-frame 1 0 low [CCLE,INTRACHROMOSOMAL[chr13:0.37Mb]],inversion MYCBP2 NA SLAIN1 NA NA NA NA NA NA +20:34792450 20:34445287 NCOA6--ITCH BS_H97S5SQN ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr20:0.18Mb]],inversion NCOA6 NA ITCH NA Oncogene NA NA NA NA +14:26595410 7:48310757 NOVA1--ABCA13 BS_H97S5SQN ARRIBA frameshift 88 16 high [INTERCHROMOSOMAL[chr14--chr7]],translocation/5'-5' NOVA1 NA ABCA13 NA NA NA NA NA NA +17:9023391 17:9378653 NTN1--STX8 BS_H97S5SQN ARRIBA in-frame 2 0 low [GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr17:0.01Mb],LOCAL_INVERSION:+:-:[6471]],inversion NTN1 NA STX8 NA NA NA NA NA TCGAFusion +17:9023391 17:9505162 NTN1--STX8 BS_H97S5SQN ARRIBA frameshift 1 0 low [GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr17:0.01Mb],LOCAL_INVERSION:+:-:[6471]],inversion NTN1 NA STX8 NA NA NA NA NA TCGAFusion +4:744688 4:139890967 PCGF3--MAML3 BS_H97S5SQN ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr4:138.95Mb]],inversion PCGF3 NA MAML3 NA NA NA NA NA NA +10:87894109 20:56778763 PTEN--AL133232.1(47303)/RNU6-929P(7218) BS_H97S5SQN ARRIBA frameshift 2 0 medium [],translocation PTEN NA AL133232.1 RNU6-929P TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +6:111482750 6:111674630 REV3L--FYN BS_H97S5SQN ARRIBA in-frame 1 0 low [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion +7:3301884 7:78256581 SDK1--MAGI2 BS_H97S5SQN ARRIBA in-frame 2 1 high [INTRACHROMOSOMAL[chr7:73.75Mb]],inversion SDK1 NA MAGI2 NA NA NA NA NA NA +17:9491829 4:190118361 STX8--DUX4L2(26082)/DUX4(55413) BS_H97S5SQN ARRIBA frameshift 5 4 medium [],translocation STX8 NA DUX4L2 DUX4 NA NA NA Oncogene, TranscriptionFactor NA +12:44211387 12:42441315 TMEM117--PPHLN1 BS_H97S5SQN ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:1.38Mb]],duplication TMEM117 NA PPHLN1 NA NA NA NA NA NA +12:43844928 12:42398854 TMEM117--PPHLN1 BS_H97S5SQN ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:1.38Mb]],duplication TMEM117 NA PPHLN1 NA NA NA NA NA NA +12:69360023 12:70430485 YEATS4--KCNMB4 BS_H97S5SQN ARRIBA frameshift 2 2 medium [INTRACHROMOSOMAL[chr12:0.98Mb]],deletion YEATS4 NA KCNMB4 NA NA NA NA NA NA +2:144517278 2:144523828 ZEB2--ZEB2 BS_H97S5SQN ARRIBA frameshift 13 2 medium [SELFIE,INTRACHROMOSOMAL[chr2:0.16Mb]],duplication ZEB2 NA ZEB2 NA Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA +17:1031598 17:1558559 ABR--PITPNA BS_HWGWYCY7 ARRIBA frameshift 3 1 medium [ChimerSeq,INTRACHROMOSOMAL[chr17:0.29Mb]],duplication ABR NA PITPNA NA Oncogene NA NA NA TCGAFusion +5:7396506 5:7347768 ADCY2--LINC02123 BS_HWGWYCY7 ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr5:0.05Mb],LOCAL_INVERSION:+:-:[48231]],inversion ADCY2 NA LINC02123 NA NA NA NA NA NA +1:235326914 1:230776748 ARID4B--AL512328.1 BS_HWGWYCY7 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:4.34Mb]],deletion ARID4B NA AL512328.1 NA NA NA NA NA NA +12:14385400 8:80993307 ATF7IP--PAG1 BS_HWGWYCY7 ARRIBA frameshift 3 0 high [INTERCHROMOSOMAL[chr12--chr8]],translocation ATF7IP NA PAG1 NA Oncogene NA NA NA NA +1:169127410 2:25248250 ATP1B1--DNMT3A BS_HWGWYCY7 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr1--chr2]],translocation ATP1B1 NA DNMT3A NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +8:20204539 8:42089399 ATP6V1B2--KAT6A(37409)/AC103724.1(11919) BS_HWGWYCY7 ARRIBA frameshift 10 3 medium [],deletion ATP6V1B2 NA KAT6A AC103724.1 NA CosmicCensus, Oncogene NA NA NA +10:115129535 10:114277914 ATRNL1--VWA2 BS_HWGWYCY7 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr10:0.80Mb]],duplication ATRNL1 NA VWA2 NA NA NA NA NA NA +14:23308199 21:37339454 BCL2L2--AP001412.1(70957)/AP001437.1(26023) BS_HWGWYCY7 ARRIBA frameshift 3 0 medium [],translocation BCL2L2 NA AP001412.1 AP001437.1 Oncogene NA NA NA NA +14:23308199 21:37339454 BCL2L2-PABPN1--AP001412.1(70957)/AP001437.1(26023) BS_HWGWYCY7 ARRIBA frameshift 3 0 medium [],translocation BCL2L2-PABPN1 NA AP001412.1 AP001437.1 NA NA NA NA NA +1:211778918 8:80694308 LPGAT1--ZNF704 BS_HWGWYCY7 ARRIBA in-frame 1 2 medium [INTERCHROMOSOMAL[chr1--chr8]],translocation LPGAT1 NA ZNF704 NA NA TranscriptionFactor NA NA NA +1:211778918 8:80693107 LPGAT1--ZNF704 BS_HWGWYCY7 ARRIBA in-frame 1 1 medium [INTERCHROMOSOMAL[chr1--chr8]],translocation LPGAT1 NA ZNF704 NA NA TranscriptionFactor NA NA NA +17:19385099 10:117684083 MFAP4--AC005871.1(111626)/AL139121.1(51230) BS_HWGWYCY7 ARRIBA frameshift 4 3 high [],translocation MFAP4 NA AC005871.1 AL139121.1 NA NA NA NA NA +17:19384214 10:132770444 MFAP4--INPP5A BS_HWGWYCY7 ARRIBA other 9 5 medium [INTERCHROMOSOMAL[chr17--chr10]],translocation MFAP4 NA INPP5A NA NA NA NA NA NA +14:32935003 19:54407890 NPAS3--AC245884.4(27930)/TTYH1(7329) BS_HWGWYCY7 ARRIBA frameshift 2 0 medium [],translocation NPAS3 NA AC245884.4 TTYH1 TranscriptionFactor NA NA Oncogene NA +7:6002453 7:6048844 PMS2--EIF2AK1 BS_HWGWYCY7 ARRIBA in-frame 3 1 low [INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:-:[13119]],duplication PMS2 NA EIF2AK1 NA CosmicCensus, Oncogene Kinase NA NA NA +18:38010444 10:114277914 RPL12P40(337268)/AC100781.1(644765)--VWA2 BS_HWGWYCY7 ARRIBA other 4 0 medium [],translocation RPL12P40 AC100781.1 VWA2 NA NA NA NA NA NA +7:140355668 16:89895038 SLC37A3--TCF25 BS_HWGWYCY7 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr7--chr16]],translocation SLC37A3 NA TCF25 NA NA NA NA NA NA +7:17801588 9:70761724 SNX13--TRPM3 BS_HWGWYCY7 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr7--chr9]],translocation SNX13 NA TRPM3 NA NA NA NA NA NA +17:17844351 1:125105182 TOM1L2--LINC01691(3524658)/AC242852.1(18237998) BS_HWGWYCY7 ARRIBA other 2 1 medium [],translocation TOM1L2 NA LINC01691 AC242852.1 TumorSuppressorGene NA NA NA NA +9:70811170 18:80202932 TRPM3--PARD6G BS_HWGWYCY7 ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr9--chr18]],translocation TRPM3 NA PARD6G NA NA NA NA NA NA +9:70784105 7:17816289 TRPM3--SNX13 BS_HWGWYCY7 ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr9--chr7]],translocation TRPM3 NA SNX13 NA NA NA NA NA NA +2:61370321 2:61883548 USP34--CCT4 BS_HWGWYCY7 ARRIBA in-frame 1 0 low [FA_CancerSupp,Klijn_CellLines,CCLE,INTRACHROMOSOMAL[chr2:0.40Mb]],duplication USP34 NA CCT4 NA NA NA NA NA TCGAFusion +1:21782824 1:21834945 USP48--HSPG2 BS_HWGWYCY7 ARRIBA frameshift 2 0 low [CCLE,INTRACHROMOSOMAL[chr1:0.04Mb],LOCAL_REARRANGEMENT:-:[38639]],duplication USP48 NA HSPG2 NA NA Oncogene NA NA TCGAFusion +1:27489986 1:27558883 WASF2--AHDC1 BS_HWGWYCY7 ARRIBA other 2 0 low [YOSHIHARA_TCGA,ChimerSeq,FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.04Mb],LOCAL_REARRANGEMENT:-:[43877]],duplication WASF2 NA AHDC1 NA Oncogene TranscriptionFactor NA NA TCGAFusion +8:76778439 12:4654292 ZFHX4--AC005832.4 BS_HWGWYCY7 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr8--chr12]],translocation ZFHX4 NA AC005832.4 NA TranscriptionFactor NA NA NA NA +8:76778439 12:4654292 ZFHX4--NDUFA9 BS_HWGWYCY7 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr8--chr12]],translocation ZFHX4 NA NDUFA9 NA TranscriptionFactor NA NA NA NA +8:80821374 8:79336824 ZNF704--AC138646.1(22353)/AC100870.1(183321) BS_HWGWYCY7 ARRIBA frameshift 6 0 high [],deletion ZNF704 NA AC138646.1 AC100870.1 TranscriptionFactor NA NA NA NA +22:28987201 8:145072052 ZNRF3--C8orf33(16022) BS_HWGWYCY7 ARRIBA frameshift 9 5 high [],translocation ZNRF3 NA C8orf33 NA CosmicCensus NA NA NA NA +22:28987201 2:194419308 ZNRF3--LINC01821 BS_HWGWYCY7 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr22--chr2]],translocation ZNRF3 NA LINC01821 NA CosmicCensus NA NA NA NA +7:76549861 7:77241691 AC004980.1--CCDC146 BS_JB43XBCQ ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr7:0.49Mb]],deletion AC004980.1 NA CCDC146 NA NA NA NA NA NA +7:76549861 7:77236947 AC004980.1--CCDC146 BS_JB43XBCQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.49Mb]],deletion AC004980.1 NA CCDC146 NA NA NA NA NA NA +7:76549861 7:77167658 AC004980.1--CCDC146 BS_JB43XBCQ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:0.49Mb]],deletion AC004980.1 NA CCDC146 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_JB43XBCQ ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_JB43XBCQ ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +5:176368982 1:10403071 ARL10--PGD BS_JB43XBCQ ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr5--chr1]],translocation ARL10 NA PGD NA NA NA NA NA NA +7:69599962 7:2939928 AUTS2--CARD11 BS_JB43XBCQ STARFUSION in-frame 17 7 NA [INTRACHROMOSOMAL[chr7:66.55Mb]] AUTS2 NA CARD11 NA NA CosmicCensus, Oncogene NA NA NA +7:69599962 7:2939928 AUTS2--CARD11 BS_JB43XBCQ ARRIBA in-frame 15 7 high [INTRACHROMOSOMAL[chr7:66.55Mb]],inversion AUTS2 NA CARD11 NA NA CosmicCensus, Oncogene NA NA NA +14:99231345 14:98030607 BCL11B--LINC01550(52483)/AL163932.1(37633) BS_JB43XBCQ ARRIBA frameshift 1 1 high [],inversion BCL11B NA LINC01550 AL163932.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +14:103913961 15:27986643 C14orf2--OCA2 BS_JB43XBCQ ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr14--chr15]],translocation C14orf2 NA OCA2 NA NA NA NA NA NA +14:103913961 15:27989666 C14orf2--OCA2 BS_JB43XBCQ ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr14--chr15]],translocation C14orf2 NA OCA2 NA NA NA NA NA NA +14:103913961 15:27990647 C14orf2--OCA2 BS_JB43XBCQ ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr14--chr15]],translocation C14orf2 NA OCA2 NA NA NA NA NA NA +7:133070142 7:138259128 CHCHD3--SNORA51(70999)/AC008155.2(38960) BS_JB43XBCQ ARRIBA frameshift 3 1 high [],inversion CHCHD3 NA SNORA51 AC008155.2 TranscriptionFactor NA NA NA NA +14:65044443 14:60975800 CHURC1-FNTB--TRMT5 BS_JB43XBCQ ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr14:3.93Mb]],duplication/5'-5' CHURC1-FNTB NA TRMT5 NA NA NA NA NA NA +14:65044443 14:60975800 FNTB--TRMT5 BS_JB43XBCQ ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr14:4.01Mb]],duplication/5'-5' FNTB NA TRMT5 NA NA NA NA NA NA +15:43909882 15:99228732 FRMD5--TTC23 BS_JB43XBCQ STARFUSION other 10 4 NA [INTRACHROMOSOMAL[chr15:54.94Mb]] FRMD5 NA TTC23 NA NA NA NA NA NA +15:43909882 15:99228732 FRMD5--TTC23 BS_JB43XBCQ ARRIBA in-frame 9 4 high [INTRACHROMOSOMAL[chr15:54.94Mb]],duplication FRMD5 NA TTC23 NA NA NA NA NA NA +15:43909882 15:99241559 FRMD5--TTC23 BS_JB43XBCQ ARRIBA frameshift 1 4 high [INTRACHROMOSOMAL[chr15:54.94Mb]],duplication FRMD5 NA TTC23 NA NA NA NA NA NA +9:31848907 9:32405485 HMGB3P23(203747)/RNA5SP281(444651)--ACO1 BS_JB43XBCQ ARRIBA other 2 0 medium [],deletion HMGB3P23 RNA5SP281 ACO1 NA NA NA NA NA NA +14:44797930 14:44393738 LINC02302(15101)/DOCK11P1(62386)--AL161752.1 BS_JB43XBCQ ARRIBA other 4 0 medium [],deletion LINC02302 DOCK11P1 AL161752.1 NA NA NA NA NA NA +7:1940298 7:94300804 MAD1L1--AC003092.2(223647)/COL1A2(93757) BS_JB43XBCQ ARRIBA other 2 2 medium [],inversion MAD1L1 NA AC003092.2 COL1A2 TumorSuppressorGene, Oncogene NA NA Oncogene NA +2:148233396 18:76362556 MBD5--ZNF516 BS_JB43XBCQ ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr2--chr18]],translocation MBD5 NA ZNF516 NA NA TranscriptionFactor NA NA NA +14:67323812 14:33797457 MPP5--NPAS3 BS_JB43XBCQ ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr14:33.44Mb]],duplication MPP5 NA NPAS3 NA NA TranscriptionFactor NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_JB43XBCQ ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +7:4221364 7:8427702 SDK1--AC007128.1(83186)/NXPH1(6253) BS_JB43XBCQ ARRIBA frameshift 2 0 high [],deletion SDK1 NA AC007128.1 NXPH1 NA NA NA NA NA +5:54519573 5:54287065 SNX18--ARL15 BS_JB43XBCQ ARRIBA frameshift 4 3 high [INTRACHROMOSOMAL[chr5:0.21Mb]],duplication/5'-5' SNX18 NA ARL15 NA NA NA NA NA NA +19:2351511 4:3230370 SPPL2B--HTT BS_JB43XBCQ ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr19--chr4]],translocation/5'-5' SPPL2B NA HTT NA Oncogene NA NA NA NA +15:76060016 14:24576284 TMEM266--CTSG BS_JB43XBCQ ARRIBA other 4 1 high [INTERCHROMOSOMAL[chr15--chr14]],translocation TMEM266 NA CTSG NA NA NA NA NA NA +7:47505318 7:149023053 TNS3--PDIA4 BS_JB43XBCQ ARRIBA other 7 2 medium [INTRACHROMOSOMAL[chr7:101.42Mb]],inversion/5'-5' TNS3 NA PDIA4 NA NA NA NA NA NA +7:47506907 7:149048940 TNS3--RNU6-650P(15773)/COX6B1P1(5021) BS_JB43XBCQ ARRIBA frameshift 13 2 high [],inversion TNS3 NA RNU6-650P COX6B1P1 NA NA NA NA NA +14:102830472 14:103955664 TRAF3--TDRD9 BS_JB43XBCQ STARFUSION other 7 2 NA [INTRACHROMOSOMAL[chr14:1.02Mb]] TRAF3 NA TDRD9 NA Oncogene NA NA NA NA +14:102830472 14:103955664 TRAF3--TDRD9 BS_JB43XBCQ ARRIBA other 7 2 high [INTRACHROMOSOMAL[chr14:1.02Mb]],deletion TRAF3 NA TDRD9 NA Oncogene NA NA NA NA +7:157139338 7:155363197 UBE3C--BLACE BS_JB43XBCQ ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:1.77Mb]],inversion UBE3C NA BLACE NA NA NA NA NA NA +7:157139338 7:155313006 UBE3C--INSIG1(2771)/BLACE(43979) BS_JB43XBCQ ARRIBA frameshift 4 0 medium [],inversion UBE3C NA INSIG1 BLACE NA NA NA NA NA +6:167827237 22:31095303 AFDN--SMTN BS_JGA9BP3A STARFUSION in-frame 157 35 NA [INTERCHROMOSOMAL[chr6--chr22]] AFDN NA SMTN NA CosmicCensus, Oncogene NA NA NA NA +6:167827237 22:31095303 AFDN--SMTN BS_JGA9BP3A ARRIBA in-frame 149 25 high [INTERCHROMOSOMAL[chr6--chr22]],translocation AFDN NA SMTN NA CosmicCensus, Oncogene NA NA NA NA +9:94339020 9:96861603 AL691447.2--ZNF782 BS_JGA9BP3A ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr9:2.46Mb]],inversion AL691447.2 NA ZNF782 NA NA TranscriptionFactor NA NA NA +9:94339020 9:96845016 AL691447.2--ZNF782 BS_JGA9BP3A ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr9:2.46Mb]],inversion AL691447.2 NA ZNF782 NA NA TranscriptionFactor NA NA NA +22:49904179 22:18389967 ALG12--LINC01660 BS_JGA9BP3A ARRIBA frameshift 6 0 high [INTRACHROMOSOMAL[chr22:31.51Mb]],deletion ALG12 NA LINC01660 NA NA NA NA NA NA +4:113174413 16:29082044 ANK2--AC009093.3 BS_JGA9BP3A ARRIBA other 10 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation ANK2 NA AC009093.3 NA NA NA NA NA NA +22:50625363 22:29660158 ARSA--NF2 BS_JGA9BP3A ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr22:20.92Mb]],deletion/5'-5' ARSA NA NF2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +22:41813975 22:43514666 CCDC134--MPPED1(6818)/EFCAB6-AS1(1441) BS_JGA9BP3A ARRIBA other 3 3 medium [],deletion CCDC134 NA MPPED1 EFCAB6-AS1 NA NA NA NA NA +22:28734403 22:29654657 CHEK2--NF2 BS_JGA9BP3A ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr22:0.86Mb]],inversion CHEK2 NA NF2 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +22:28741769 22:29654657 CHEK2--NF2 BS_JGA9BP3A ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr22:0.86Mb]],inversion CHEK2 NA NF2 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +22:19196266 6:166157871 CLTCL1--T BS_JGA9BP3A ARRIBA frameshift 1 3 high [INTERCHROMOSOMAL[chr22--chr6]],translocation/5'-5' CLTCL1 NA T NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA +21:8684995 22:25946137 CR381572.2(4061)/CR381572.1(16466)--MYO18B BS_JGA9BP3A ARRIBA other 37 3 high [],translocation CR381572.2 CR381572.1 MYO18B NA NA TumorSuppressorGene NA NA NA +22:29292050 6:143948185 EWSR1--PLAGL1 BS_JGA9BP3A STARFUSION other 19 13 NA [INTERCHROMOSOMAL[chr22--chr6]] EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +22:29288786 6:143942663 EWSR1--PLAGL1 BS_JGA9BP3A STARFUSION in-frame 11 13 NA [INTERCHROMOSOMAL[chr22--chr6]] EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +22:29287134 6:143942663 EWSR1--PLAGL1 BS_JGA9BP3A STARFUSION frameshift 9 13 NA [INTERCHROMOSOMAL[chr22--chr6]] EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +22:29288786 6:143942663 EWSR1--PLAGL1 BS_JGA9BP3A ARRIBA in-frame 11 6 high [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +22:29291599 6:143942663 EWSR1--PLAGL1 BS_JGA9BP3A ARRIBA frameshift 1 6 high [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +22:29292050 6:143948185 EWSR1--PLAGL1 BS_JGA9BP3A ARRIBA other 18 11 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +22:29287134 6:143942663 EWSR1--PLAGL1 BS_JGA9BP3A ARRIBA frameshift 9 3 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA +22:48489704 6:168017973 FAM19A5--KIF25 BS_JGA9BP3A STARFUSION other 33 13 NA [INTERCHROMOSOMAL[chr22--chr6]] FAM19A5 NA KIF25 NA NA NA NA NA NA +22:48576571 6:168017973 FAM19A5--KIF25 BS_JGA9BP3A STARFUSION other 6 13 NA [INTERCHROMOSOMAL[chr22--chr6]] FAM19A5 NA KIF25 NA NA NA NA NA NA +22:48489704 6:168017973 FAM19A5--KIF25 BS_JGA9BP3A ARRIBA frameshift 37 11 high [INTERCHROMOSOMAL[chr22--chr6]],translocation FAM19A5 NA KIF25 NA NA NA NA NA NA +22:48576571 6:168017973 FAM19A5--KIF25 BS_JGA9BP3A ARRIBA frameshift 6 12 high [INTERCHROMOSOMAL[chr22--chr6]],translocation FAM19A5 NA KIF25 NA NA NA NA NA NA +22:23070570 22:25946137 GNAZ--MYO18B BS_JGA9BP3A ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr22:2.62Mb]],deletion GNAZ NA MYO18B NA NA TumorSuppressorGene NA NA NA +22:19802001 22:29664990 GNB1L--NF2 BS_JGA9BP3A STARFUSION in-frame 10 10 NA [INTRACHROMOSOMAL[chr22:9.75Mb]] GNB1L NA NF2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +22:19802001 22:29664990 GNB1L--NF2 BS_JGA9BP3A ARRIBA in-frame 10 5 high [INTRACHROMOSOMAL[chr22:9.75Mb]],inversion GNB1L NA NF2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +5:75343964 2:219001 HMGCR--SH3YL1 BS_JGA9BP3A ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr5--chr2]],translocation HMGCR NA SH3YL1 NA Oncogene NA NA NA NA +6:159991323 22:27604640 IGF2R--AL133456.1(31067)/AL121885.2(71919) BS_JGA9BP3A ARRIBA frameshift 180 37 high [],translocation IGF2R NA AL133456.1 AL121885.2 TumorSuppressorGene, Oncogene NA NA NA NA +6:159991323 22:27582549 IGF2R--AL133456.1(8976)/AL121885.2(94010) BS_JGA9BP3A ARRIBA frameshift 11 0 high [],translocation IGF2R NA AL133456.1 AL121885.2 TumorSuppressorGene, Oncogene NA NA NA NA +22:33856740 22:28821972 LARGE1--Z93930.2 BS_JGA9BP3A STARFUSION other 10 1 NA [INTRACHROMOSOMAL[chr22:4.31Mb]] LARGE1 NA Z93930.2 NA NA NA NA NA NA +22:33856740 22:28821972 LARGE1--Z93930.2 BS_JGA9BP3A ARRIBA other 9 1 high [INTRACHROMOSOMAL[chr22:4.31Mb]],inversion LARGE1 NA Z93930.2 NA NA NA NA NA NA +22:33919995 22:28987076 LARGE1--ZNRF3 BS_JGA9BP3A STARFUSION other 7 8 NA [INTRACHROMOSOMAL[chr22:4.10Mb]] LARGE1 NA ZNRF3 NA NA CosmicCensus NA NA NA +22:33856740 22:28987076 LARGE1--ZNRF3 BS_JGA9BP3A STARFUSION other 3 8 NA [INTRACHROMOSOMAL[chr22:4.10Mb]] LARGE1 NA ZNRF3 NA NA CosmicCensus NA NA NA +22:33919995 22:28987076 LARGE1--ZNRF3 BS_JGA9BP3A ARRIBA other 6 6 high [INTRACHROMOSOMAL[chr22:4.10Mb]],inversion LARGE1 NA ZNRF3 NA NA CosmicCensus NA NA NA +22:33856740 22:28987076 LARGE1--ZNRF3 BS_JGA9BP3A ARRIBA other 3 6 high [INTRACHROMOSOMAL[chr22:4.10Mb]],inversion LARGE1 NA ZNRF3 NA NA CosmicCensus NA NA NA +6:160622663 6:163455279 LPA--QKI BS_JGA9BP3A ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr6:2.75Mb]],inversion LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA +6:160635123 6:163455279 LPA--QKI BS_JGA9BP3A ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr6:2.75Mb]],inversion LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA +6:160633753 6:163455279 LPA--QKI BS_JGA9BP3A ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr6:2.75Mb]],inversion LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA +6:160467542 6:163455277 LPAL2--QKI BS_JGA9BP3A ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr6:2.89Mb]],inversion LPAL2 NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA +22:50068433 14:18540992 MLC1--BNIP3P6(121719)/CR383656.11(14685) BS_JGA9BP3A ARRIBA frameshift 1 4 high [],translocation MLC1 NA BNIP3P6 CR383656.11 NA NA NA NA NA +22:26004855 19:58400297 MYO18B--LINC02560 BS_JGA9BP3A STARFUSION other 12 3 NA [INTERCHROMOSOMAL[chr22--chr19]] MYO18B NA LINC02560 NA TumorSuppressorGene NA NA NA NA +22:26004855 19:58400297 MYO18B--LINC02560 BS_JGA9BP3A ARRIBA frameshift 11 2 high [INTERCHROMOSOMAL[chr22--chr19]],translocation MYO18B NA LINC02560 NA TumorSuppressorGene NA NA NA NA +11:34150602 11:34152559 NAT10(2932)/ABTB2(386)--ABTB2 BS_JGA9BP3A ARRIBA other 5 1 medium [],duplication NAT10 ABTB2 ABTB2 NA NA Oncogene Oncogene NA NA +22:29642285 22:37967099 NF2--AL031587.6 BS_JGA9BP3A STARFUSION other 99 23 NA [INTRACHROMOSOMAL[chr22:8.25Mb]] NF2 NA AL031587.6 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:29661339 22:50622395 NF2--MAPK8IP2(8414)/ARSA(359) BS_JGA9BP3A ARRIBA frameshift 3 0 high [],deletion NF2 NA MAPK8IP2 ARSA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:29642285 22:37967099 NF2--POLR2F BS_JGA9BP3A STARFUSION frameshift 99 27 NA [INTRACHROMOSOMAL[chr22:8.25Mb]] NF2 NA POLR2F NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:29642285 22:37967099 NF2--POLR2F BS_JGA9BP3A ARRIBA frameshift 99 16 high [INTRACHROMOSOMAL[chr22:8.25Mb]],deletion NF2 NA POLR2F NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:29642285 22:38041068 NF2--POLR2F BS_JGA9BP3A ARRIBA frameshift 1 4 high [INTRACHROMOSOMAL[chr22:8.25Mb]],deletion NF2 NA POLR2F NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +22:44119140 6:156108654 PARVB--MIR1202(161775)/SNORD28B(270096) BS_JGA9BP3A ARRIBA frameshift 1 4 high [],translocation PARVB NA MIR1202 SNORD28B Oncogene NA NA NA NA +22:44119140 6:156145471 PARVB--MIR1202(198592)/SNORD28B(233279) BS_JGA9BP3A ARRIBA frameshift 2 0 high [],translocation PARVB NA MIR1202 SNORD28B Oncogene NA NA NA NA +22:37959476 6:169977881 POLR2F--AL049612.1(167779)/AL596442.1(184636) BS_JGA9BP3A ARRIBA frameshift 17 5 high [],translocation POLR2F NA AL049612.1 AL596442.1 NA NA NA NA NA +19:55236643 22:23617480 PPP6R1--DRICH1 BS_JGA9BP3A ARRIBA frameshift 41 14 high [INTERCHROMOSOMAL[chr19--chr22]],translocation/5'-5' PPP6R1 NA DRICH1 NA NA NA NA NA NA +22:31716036 22:33121252 PRR14L--LINC01640(4958)/Z82198.3(15888) BS_JGA9BP3A ARRIBA frameshift 3 1 medium [],inversion PRR14L NA LINC01640 Z82198.3 NA NA NA NA NA +22:31749993 22:33145201 PRR14L--Z82198.3(7863)/LARGE1(17025) BS_JGA9BP3A ARRIBA other 2 0 high [],inversion PRR14L NA Z82198.3 LARGE1 NA NA NA NA NA +22:36028240 22:22900976 RBFOX2--IGL-@ BS_JGA9BP3A STARFUSION other 27 20 NA [INTRACHROMOSOMAL[chr22:12.82Mb]] RBFOX2 NA IGL-@ NA NA Oncogene NA NA NA +22:36027052 22:22900976 RBFOX2--IGL-@ BS_JGA9BP3A STARFUSION other 14 20 NA [INTRACHROMOSOMAL[chr22:12.82Mb]] RBFOX2 NA IGL-@ NA NA Oncogene NA NA NA +22:36028240 22:22900976 RBFOX2--IGL@ BS_JGA9BP3A STARFUSION other 27 20 NA [INTRACHROMOSOMAL[chr22:12.82Mb]] RBFOX2 NA IGL@ NA NA Oncogene NA NA NA +22:36027052 22:22900976 RBFOX2--IGL@ BS_JGA9BP3A STARFUSION other 14 20 NA [INTRACHROMOSOMAL[chr22:12.82Mb]] RBFOX2 NA IGL@ NA NA Oncogene NA NA NA +22:36028240 22:22900976 RBFOX2--IGLC2 BS_JGA9BP3A STARFUSION frameshift 27 17 NA [INTRACHROMOSOMAL[chr22:12.84Mb]] RBFOX2 NA IGLC2 NA NA NA NA NA NA +22:36027052 22:22900976 RBFOX2--IGLC2 BS_JGA9BP3A STARFUSION other 14 17 NA [INTRACHROMOSOMAL[chr22:12.84Mb]] RBFOX2 NA IGLC2 NA NA NA NA NA NA +22:36027052 22:22900976 RBFOX2--IGLC2 BS_JGA9BP3A ARRIBA frameshift 20 13 high [INTRACHROMOSOMAL[chr22:12.84Mb]],inversion RBFOX2 NA IGLC2 NA NA NA NA NA NA +22:36028240 22:22900976 RBFOX2--IGLC2 BS_JGA9BP3A ARRIBA frameshift 22 9 high [INTRACHROMOSOMAL[chr22:12.84Mb]],inversion RBFOX2 NA IGLC2 NA NA NA NA NA NA +22:36028240 22:22915624 RBFOX2--IGLC5 BS_JGA9BP3A ARRIBA frameshift 16 1 high [INTRACHROMOSOMAL[chr22:12.82Mb]],inversion RBFOX2 NA IGLC5 NA NA NA NA NA NA +19:58397033 22:26013283 RNF225--MYO18B BS_JGA9BP3A ARRIBA other 6 1 medium [INTERCHROMOSOMAL[chr19--chr22]],translocation RNF225 NA MYO18B NA NA TumorSuppressorGene NA NA NA +6:166858200 22:44571376 RPS6KA2--LINC00207 BS_JGA9BP3A ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr6--chr22]],translocation RPS6KA2 NA LINC00207 NA TumorSuppressorGene, Kinase NA NA NA NA +6:157823446 6:144313145 SNX9--AL024474.2 BS_JGA9BP3A ARRIBA frameshift 13 5 high [INTRACHROMOSOMAL[chr6:13.37Mb]],inversion SNX9 NA AL024474.2 NA NA NA NA NA NA +6:157823446 6:144213231 SNX9--TPT1P4(12266)/AL024474.1(43803) BS_JGA9BP3A ARRIBA frameshift 2 0 high [],inversion SNX9 NA TPT1P4 AL024474.1 NA NA NA NA NA +6:157823446 6:144313145 SNX9--UTRN BS_JGA9BP3A ARRIBA frameshift 13 5 high [INTRACHROMOSOMAL[chr6:12.85Mb]],inversion/3'-3' SNX9 NA UTRN NA NA NA NA NA NA +22:20043443 22:11298280 TANGO2--5_8S_rRNA(48321)/AC116618.1(1304186) BS_JGA9BP3A ARRIBA frameshift 12 3 high [],inversion TANGO2 NA 5_8S_rRNA AC116618.1 NA NA NA NA NA +22:41414511 22:41825698 TEF(15185)/AL008582.1(16423)--CCDC134 BS_JGA9BP3A ARRIBA other 2 1 high [],deletion TEF AL008582.1 CCDC134 NA TranscriptionFactor NA NA NA NA +22:29511106 6:169457634 THOC5--WDR27 BS_JGA9BP3A ARRIBA in-frame 3 0 medium [INTERCHROMOSOMAL[chr22--chr6]],translocation THOC5 NA WDR27 NA Oncogene NA NA NA NA +22:38245935 22:37377941 TMEM184B--ELFN2 BS_JGA9BP3A ARRIBA frameshift 33 3 high [INTRACHROMOSOMAL[chr22:0.79Mb]],inversion/5'-5' TMEM184B NA ELFN2 NA NA NA NA NA NA +22:38245935 22:37372034 TMEM184B--Z94160.2 BS_JGA9BP3A STARFUSION other 36 17 NA [INTRACHROMOSOMAL[chr22:0.85Mb]] TMEM184B NA Z94160.2 NA NA NA NA NA NA +22:38245935 22:37372034 TMEM184B--Z94160.2 BS_JGA9BP3A ARRIBA frameshift 36 17 high [INTRACHROMOSOMAL[chr22:0.85Mb]],inversion TMEM184B NA Z94160.2 NA NA NA NA NA NA +22:49853989 6:160650497 ZBED4--LPA BS_JGA9BP3A ARRIBA other 1 2 high [INTERCHROMOSOMAL[chr22--chr6]],translocation ZBED4 NA LPA NA TranscriptionFactor NA NA NA NA +22:49895233 6:160650497 ZBED4(5155)/ALG12(4996)--LPA BS_JGA9BP3A ARRIBA other 1 2 high [],translocation ZBED4 ALG12 LPA NA TranscriptionFactor NA NA NA NA +19:57813294 22:50064198 ZNF552--MLC1 BS_JGA9BP3A STARFUSION frameshift 11 3 NA [INTERCHROMOSOMAL[chr19--chr22]] ZNF552 NA MLC1 NA TranscriptionFactor NA NA NA NA +19:57803907 22:50064198 ZNF552--MLC1 BS_JGA9BP3A STARFUSION other 7 3 NA [INTERCHROMOSOMAL[chr19--chr22]] ZNF552 NA MLC1 NA TranscriptionFactor NA NA NA NA +19:57813294 22:50064198 ZNF552--MLC1 BS_JGA9BP3A ARRIBA frameshift 9 2 high [INTERCHROMOSOMAL[chr19--chr22]],translocation ZNF552 NA MLC1 NA TranscriptionFactor NA NA NA NA +19:57769878 22:31095303 ZNF586--SMTN BS_JGA9BP3A ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr19--chr22]],translocation ZNF586 NA SMTN NA TranscriptionFactor NA NA NA NA +3:115262930 3:115676013 AC046136.1--GAP43 BS_JQVAWTTM ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA +4:113174413 16:29082044 ANK2--AC009093.3 BS_JQVAWTTM ARRIBA other 7 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation ANK2 NA AC009093.3 NA NA NA NA NA NA +9:87499139 9:92517875 DAPK1--ECM2 BS_JQVAWTTM ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:4.78Mb]],inversion DAPK1 NA ECM2 NA Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA NA +8:127796008 2:134070190 PVT1--RN7SKP93(473791)/MGAT5(49793) BS_JQVAWTTM ARRIBA other 2 0 medium [],translocation PVT1 NA RN7SKP93 MGAT5 Oncogene NA NA NA NA +1:44778055 3:308938 RPS8--RPS8P6 BS_JQVAWTTM STARFUSION other 17 0 NA [INTERCHROMOSOMAL[chr1--chr3]] RPS8 NA RPS8P6 NA NA NA NA NA NA +2:69495985 2:52314234 AAK1--AC007402.1 BS_KBEX4RT2 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr2:17.05Mb]],deletion/5'-5' AAK1 NA AC007402.1 NA Kinase, Kinase NA NA NA NA +2:69495985 2:52418940 AAK1--AC007402.1(11023)/AC139712.2(55133) BS_KBEX4RT2 ARRIBA frameshift 1 1 medium [],deletion AAK1 NA AC007402.1 AC139712.2 Kinase, Kinase NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_KBEX4RT2 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_KBEX4RT2 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +2:235807331 2:235034871 AGAP1--SH3BP4 BS_KBEX4RT2 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr2:0.44Mb]],duplication AGAP1 NA SH3BP4 NA NA NA NA NA NA +14:32329408 14:31787780 AKAP6--NUBPL BS_KBEX4RT2 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.47Mb]],duplication AKAP6 NA NUBPL NA NA NA NA NA NA +5:14871352 5:14270825 ANKH--TRIO BS_KBEX4RT2 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr5:0.17Mb]],inversion ANKH NA TRIO NA NA Kinase, Oncogene, Kinase NA NA NA +5:140438617 5:151676201 ANKHD1--SPARC BS_KBEX4RT2 ARRIBA in-frame 2 1 low [INTRACHROMOSOMAL[chr5:11.12Mb]],inversion ANKHD1 NA SPARC NA NA TumorSuppressorGene NA NA NA +5:140438617 5:151676201 ANKHD1-EIF4EBP3--SPARC BS_KBEX4RT2 ARRIBA in-frame 2 1 low [INTRACHROMOSOMAL[chr5:11.11Mb]],inversion ANKHD1-EIF4EBP3 NA SPARC NA NA TumorSuppressorGene NA NA NA +5:82305044 5:82279224 ATP6AP1L--RPS23(647)/ATP6AP1L(238) BS_KBEX4RT2 ARRIBA other 2 1 medium [],duplication ATP6AP1L NA RPS23 ATP6AP1L NA NA NA NA NA +12:54280008 12:47296225 CBX5--AC008083.1(17204)/AC008083.2(45389) BS_KBEX4RT2 ARRIBA other 19 1 high [],inversion CBX5 NA AC008083.1 AC008083.2 TumorSuppressorGene NA NA NA NA +18:68734766 5:113251 CCDC102B--PLEKHG4B BS_KBEX4RT2 ARRIBA other 2 0 high [INTERCHROMOSOMAL[chr18--chr5]],translocation CCDC102B NA PLEKHG4B NA NA NA NA NA NA +18:68798181 5:113251 CCDC102B--PLEKHG4B BS_KBEX4RT2 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr18--chr5]],translocation CCDC102B NA PLEKHG4B NA NA NA NA NA NA +5:138723625 14:27890590 CTNNA1--AL390334.1(45304)/BNIP3P1(373800) BS_KBEX4RT2 ARRIBA other 3 0 high [],translocation CTNNA1 NA AL390334.1 BNIP3P1 Oncogene NA NA NA NA +X:27632000 X:23671529 DCAF8L2--PRDX4 BS_KBEX4RT2 ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chrX:3.90Mb]],duplication DCAF8L2 NA PRDX4 NA NA NA NA NA NA +14:53152261 5:168428033 DDHD1--WWC1 BS_KBEX4RT2 STARFUSION in-frame 12 5 NA [INTERCHROMOSOMAL[chr14--chr5]] DDHD1 NA WWC1 NA NA NA NA NA NA +14:53152261 5:168423533 DDHD1--WWC1 BS_KBEX4RT2 STARFUSION frameshift 5 5 NA [INTERCHROMOSOMAL[chr14--chr5]] DDHD1 NA WWC1 NA NA NA NA NA NA +14:53152261 5:168428033 DDHD1--WWC1 BS_KBEX4RT2 ARRIBA in-frame 12 5 high [INTERCHROMOSOMAL[chr14--chr5]],translocation DDHD1 NA WWC1 NA NA NA NA NA NA +14:53152261 5:168423533 DDHD1--WWC1 BS_KBEX4RT2 ARRIBA frameshift 5 5 high [INTERCHROMOSOMAL[chr14--chr5]],translocation DDHD1 NA WWC1 NA NA NA NA NA NA +14:52657917 5:64200808 ERO1A--RNF180 BS_KBEX4RT2 STARFUSION frameshift 13 2 NA [INTERCHROMOSOMAL[chr14--chr5]] ERO1A NA RNF180 NA NA TumorSuppressorGene NA NA NA +14:52657917 5:64200808 ERO1A--RNF180 BS_KBEX4RT2 ARRIBA frameshift 13 3 high [INTERCHROMOSOMAL[chr14--chr5]],translocation ERO1A NA RNF180 NA NA TumorSuppressorGene NA NA NA +4:15612266 4:15017881 FBXL5--AC098829.1 BS_KBEX4RT2 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.18Mb]],deletion FBXL5 NA AC098829.1 NA NA NA NA NA NA +5:161545227 5:56881879 GABRB2--MAP3K1 BS_KBEX4RT2 ARRIBA frameshift 3 6 high [INTRACHROMOSOMAL[chr5:104.39Mb]],deletion/5'-5' GABRB2 NA MAP3K1 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +5:163464802 14:53953400 HMMR--BMP4 BS_KBEX4RT2 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr5--chr14]],translocation HMMR NA BMP4 NA NA TumorSuppressorGene NA NA NA +17:47253940 17:77307141 ITGB3--SEPT9 BS_KBEX4RT2 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr17:29.97Mb]],deletion ITGB3 NA SEPT9 NA TumorSuppressorGene CosmicCensus, Oncogene NA NA NA +5:163516829 5:177313079 MAT2B--MXD3(322)/LMAN2(18483) BS_KBEX4RT2 ARRIBA frameshift 5 1 medium [],inversion MAT2B NA MXD3 LMAN2 NA TranscriptionFactor NA NA NA +14:31565048 14:32821402 NUBPL--AKAP6 BS_KBEX4RT2 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr14:0.47Mb]],deletion NUBPL NA AKAP6 NA NA NA NA NA NA +5:163456064 5:179240763 NUDCD2--ADAMTS2 BS_KBEX4RT2 ARRIBA frameshift 7 2 medium [INTRACHROMOSOMAL[chr5:15.65Mb]],inversion/5'-5' NUDCD2 NA ADAMTS2 NA NA NA NA NA NA +5:171241078 5:158737537 RANBP17--EBF1 BS_KBEX4RT2 ARRIBA frameshift 3 5 medium [INTRACHROMOSOMAL[chr5:11.76Mb]],duplication/5'-5' RANBP17 NA EBF1 NA Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA +6:111482750 6:111674630 REV3L--FYN BS_KBEX4RT2 ARRIBA in-frame 1 0 low [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion +6:111482750 6:111661947 REV3L--FYN BS_KBEX4RT2 ARRIBA in-frame 1 0 low [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion +5:64200942 5:163180894 RNF180--AC091976.1 BS_KBEX4RT2 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr5:98.64Mb]],inversion RNF180 NA AC091976.1 NA TumorSuppressorGene NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_KBEX4RT2 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +X:17737680 X:27589954 SCML1--AC006210.2(70195)/DCAF8L2(428) BS_KBEX4RT2 ARRIBA other 1 1 high [],deletion SCML1 NA AC006210.2 DCAF8L2 NA NA NA NA NA +X:17737680 X:27631879 SCML1--DCAF8L2 BS_KBEX4RT2 STARFUSION other 12 2 NA [INTRACHROMOSOMAL[chrX:9.84Mb]] SCML1 NA DCAF8L2 NA NA NA NA NA NA +X:17737680 X:27631879 SCML1--DCAF8L2 BS_KBEX4RT2 ARRIBA other 12 2 high [INTRACHROMOSOMAL[chrX:9.84Mb]],deletion SCML1 NA DCAF8L2 NA NA NA NA NA NA +X:17737680 X:23671529 SCML1--PRDX4 BS_KBEX4RT2 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chrX:5.91Mb]],deletion SCML1 NA PRDX4 NA NA NA NA NA NA +14:52730531 5:57678989 STYX--AC008780.2(61558)/AC106822.1(72203) BS_KBEX4RT2 ARRIBA frameshift 11 4 high [],translocation STYX NA AC008780.2 AC106822.1 NA NA NA NA NA +14:52730531 5:179321159 STYX--ADAMTS2 BS_KBEX4RT2 ARRIBA frameshift 7 0 medium [INTERCHROMOSOMAL[chr14--chr5]],translocation/5'-5' STYX NA ADAMTS2 NA NA NA NA NA NA +14:52730531 5:57984757 STYX--LINC02225(85595)/LINC02101(123325) BS_KBEX4RT2 ARRIBA frameshift 4 1 high [],translocation STYX NA LINC02225 LINC02101 NA NA NA NA NA +12:88142487 12:87331930 TMTC3--RPL23AP68(161501)/AC079598.5(414637) BS_KBEX4RT2 ARRIBA other 49 9 high [],duplication TMTC3 NA RPL23AP68 AC079598.5 NA NA NA NA NA +14:103715979 12:132150981 ZFYVE21--NOC4L BS_KBEX4RT2 ARRIBA frameshift 2 1 medium [INTERCHROMOSOMAL[chr14--chr12]],translocation ZFYVE21 NA NOC4L NA NA NA NA NA NA +10:31031833 10:31461037 ZNF438--ZEB1 BS_KBEX4RT2 ARRIBA other 1 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr10:0.29Mb]],inversion ZNF438 NA ZEB1 NA TranscriptionFactor CosmicCensus, TranscriptionFactor NA NA NA +10:30908933 10:31461037 ZNF438--ZEB1 BS_KBEX4RT2 ARRIBA other 1 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr10:0.29Mb]],inversion ZNF438 NA ZEB1 NA TranscriptionFactor CosmicCensus, TranscriptionFactor NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NB9XXBW6 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NB9XXBW6 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +14:32546999 14:31787780 AKAP6--NUBPL BS_NB9XXBW6 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr14:0.47Mb]],duplication AKAP6 NA NUBPL NA NA NA NA NA NA +11:13668806 5:111735507 FAR1--NREP BS_NB9XXBW6 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr11--chr5]],translocation FAR1 NA NREP NA NA NA NA NA NA +18:57580073 18:57602943 FECH--NARS BS_NB9XXBW6 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr18:0.01Mb],LOCAL_REARRANGEMENT:-:[13884]],duplication FECH NA NARS NA NA NA NA NA NA +X:11878018 X:12498680 MSL3(102265)/Y_RNA(176806)--FRMPD4 BS_NB9XXBW6 ARRIBA other 1 1 high [],deletion MSL3 Y_RNA FRMPD4 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NB9XXBW6 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +11:57693915 11:50320914 ZDHHC5--AC024405.2 BS_NB9XXBW6 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr11:7.31Mb]],duplication ZDHHC5 NA AC024405.2 NA NA NA NA NA NA +19:43951400 5:138932578 ZNF221--CTNNA1 BS_NB9XXBW6 ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr19--chr5]],translocation ZNF221 NA CTNNA1 NA TranscriptionFactor Oncogene NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NEVYM2FP ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NEVYM2FP ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +16:76736479 16:77191476 AC106729.1--MON1B BS_NEVYM2FP ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr16:0.26Mb]],deletion AC106729.1 NA MON1B NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NEVYM2FP ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_NGSG2KB6 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_NGSG2KB6 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:115262930 3:115676013 AC046136.1--GAP43 BS_NGSG2KB6 ARRIBA other 2 1 medium [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA +10:109643395 17:19947632 BTF3P15(108405)/AL390123.1(18419)--AKAP10 BS_NGSG2KB6 ARRIBA other 3 1 medium [],translocation BTF3P15 AL390123.1 AKAP10 NA NA NA NA NA NA +7:116888190 7:116699071 CAPZA2--MET BS_NGSG2KB6 STARFUSION in-frame 42 22 NA [YOSHIHARA_TCGA,Klijn_CellLines,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[12684]] CAPZA2 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:116888190 7:116699071 CAPZA2--MET BS_NGSG2KB6 ARRIBA in-frame 36 20 high [YOSHIHARA_TCGA,Klijn_CellLines,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[12684]],duplication CAPZA2 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:116862650 7:116699071 CAPZA2--MET BS_NGSG2KB6 ARRIBA frameshift 1 3 medium [YOSHIHARA_TCGA,Klijn_CellLines,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[12684]],duplication CAPZA2 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:116888190 7:116731668 CAPZA2--MET BS_NGSG2KB6 ARRIBA frameshift 2 2 medium [YOSHIHARA_TCGA,Klijn_CellLines,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr7:0.01Mb],LOCAL_REARRANGEMENT:+:[12684]],duplication CAPZA2 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion +7:116862650 7:157898737 CAPZA2--PTPRN2 BS_NGSG2KB6 ARRIBA frameshift 3 1 medium [INTRACHROMOSOMAL[chr7:40.62Mb]],inversion CAPZA2 NA PTPRN2 NA NA NA NA NA NA +1:19484190 1:19626387 CAPZB--MINOS1 BS_NGSG2KB6 ARRIBA in-frame 1 0 low [CCLE,INTRACHROMOSOMAL[chr1:0.11Mb]],inversion CAPZB NA MINOS1 NA NA NA NA NA NA +4:52714238 4:52920870 DANCR--SCFD2 BS_NGSG2KB6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr4:0.15Mb]],inversion DANCR NA SCFD2 NA NA NA NA NA NA +1:197772868 1:198262575 DENND1B--NEK7 BS_NGSG2KB6 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:0.38Mb]],inversion DENND1B NA NEK7 NA NA Kinase, Kinase NA NA NA +2:182717072 11:18006746 DNAJC10--AC055860.1 BS_NGSG2KB6 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr2--chr11]],translocation DNAJC10 NA AC055860.1 NA NA NA NA NA NA +2:182717072 11:18006746 DNAJC10--SERGEF BS_NGSG2KB6 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr2--chr11]],translocation DNAJC10 NA SERGEF NA NA NA NA NA NA +4:190122413 4:53733187 DUX4L2(30134)/DUX4(51361)--AC124017.1 BS_NGSG2KB6 ARRIBA other 11 1 high [],duplication DUX4L2 DUX4 AC124017.1 NA NA NA Oncogene, TranscriptionFactor NA NA +22:19139612 22:19821375 ESS2--GNB1L BS_NGSG2KB6 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr22:0.64Mb]],duplication ESS2 NA GNB1L NA NA NA NA NA NA +4:15687149 20:36839441 FAM200B--SOGA1 BS_NGSG2KB6 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr4--chr20]],translocation FAM200B NA SOGA1 NA TranscriptionFactor NA NA NA NA +1:37033994 7:5199576 GRIK3--WIPI2 BS_NGSG2KB6 STARFUSION frameshift 20 2 NA [INTERCHROMOSOMAL[chr1--chr7]] GRIK3 NA WIPI2 NA NA NA NA NA NA +1:37033994 7:5199576 GRIK3--WIPI2 BS_NGSG2KB6 ARRIBA frameshift 16 2 high [INTERCHROMOSOMAL[chr1--chr7]],translocation GRIK3 NA WIPI2 NA NA NA NA NA NA +1:37033994 7:5193118 GRIK3--WIPI2 BS_NGSG2KB6 ARRIBA frameshift 1 2 high [INTERCHROMOSOMAL[chr1--chr7]],translocation GRIK3 NA WIPI2 NA NA NA NA NA NA +1:37033994 7:5214535 GRIK3--WIPI2 BS_NGSG2KB6 ARRIBA in-frame 4 1 medium [INTERCHROMOSOMAL[chr1--chr7]],translocation GRIK3 NA WIPI2 NA NA NA NA NA NA +3:8494681 3:7520280 LMCD1-AS1--GRM7-AS1 BS_NGSG2KB6 ARRIBA other 1 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr3:0.39Mb]],deletion LMCD1-AS1 NA GRM7-AS1 NA NA NA NA NA NA +4:53496023 7:5652510 LNX1--RNF216 BS_NGSG2KB6 ARRIBA in-frame 1 2 high [HGNC_GENEFAM,INTERCHROMOSOMAL[chr4--chr7]],translocation LNX1 NA RNF216 NA NA Oncogene NA NA NA +12:19132450 12:102026038 PLEKHA5--WASHC3 BS_NGSG2KB6 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:82.64Mb]],inversion PLEKHA5 NA WASHC3 NA NA NA NA NA NA +12:19132450 12:102013192 PLEKHA5--WASHC3 BS_NGSG2KB6 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:82.64Mb]],inversion PLEKHA5 NA WASHC3 NA NA NA NA NA NA +20:63521588 2:36578830 PPDPF--FEZ2 BS_NGSG2KB6 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr20--chr2]],translocation PPDPF NA FEZ2 NA NA NA NA NA NA +18:22798487 5:179623164 RBBP8--HNRNPH1 BS_NGSG2KB6 ARRIBA other 2 0 low [GTEx,INTERCHROMOSOMAL[chr18--chr5]],translocation RBBP8 NA HNRNPH1 NA TumorSuppressorGene, Oncogene NA NA NA NA +7:155718443 5:52932536 RBM33--AC025180.1 BS_NGSG2KB6 STARFUSION other 90 24 NA [INTERCHROMOSOMAL[chr7--chr5]] RBM33 NA AC025180.1 NA NA NA NA NA NA +7:155718443 5:52932536 RBM33--AC025180.1 BS_NGSG2KB6 ARRIBA frameshift 74 14 high [INTERCHROMOSOMAL[chr7--chr5]],translocation RBM33 NA AC025180.1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_NGSG2KB6 ARRIBA other 11 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:53145333 4:52685473 SCFD2--AC104066.2 BS_NGSG2KB6 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr4:0.18Mb]],inversion SCFD2 NA AC104066.2 NA NA NA NA NA NA +4:53145333 4:49557356 SCFD2--AC119751.1 BS_NGSG2KB6 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr4:3.32Mb]],inversion SCFD2 NA AC119751.1 NA NA NA NA NA NA +4:53145333 4:52712824 SCFD2--DANCR BS_NGSG2KB6 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:0.15Mb]],inversion SCFD2 NA DANCR NA NA NA NA NA NA +4:53352598 4:53458653 SCFD2--FIP1L1 BS_NGSG2KB6 ARRIBA in-frame 1 0 low [CCLE,ChimerSeq,GTEx,INTRACHROMOSOMAL[chr4:0.01Mb],LOCAL_INVERSION:-:+:[11568]],inversion SCFD2 NA FIP1L1 NA NA CosmicCensus, Oncogene NA NA TCGAFusion +15:24856716 15:25360527 SNRPN--UBE3A BS_NGSG2KB6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.36Mb]],inversion SNRPN NA UBE3A NA NA Oncogene NA NA NA +15:24968082 15:25340228 SNRPN--UBE3A BS_NGSG2KB6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.36Mb]],inversion SNRPN NA UBE3A NA NA Oncogene NA NA NA +11:16465701 11:16744601 SOX6--C11orf58 BS_NGSG2KB6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:0.13Mb]],inversion SOX6 NA C11orf58 NA TranscriptionFactor NA NA NA NA +17:51079584 17:19946305 SPAG9--AKAP10 BS_NGSG2KB6 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr17:30.98Mb]],inversion/5'-5' SPAG9 NA AKAP10 NA NA NA NA NA NA +17:50554450 17:51056482 SPATA20--SPAG9 BS_NGSG2KB6 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr17:0.41Mb]],inversion SPATA20 NA SPAG9 NA NA NA NA NA NA +10:125798063 10:71817474 UROS--PSAP BS_NGSG2KB6 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:53.93Mb]],deletion UROS NA PSAP NA NA Oncogene NA NA NA +4:52637500 4:53066458 USP46--SCFD2 BS_NGSG2KB6 ARRIBA other 2 1 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr4:0.21Mb]],inversion/5'-5' USP46 NA SCFD2 NA NA NA NA NA NA +17:32373432 17:32093944 ZNF207--AC090616.2 BS_NGSG2KB6 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr17:0.25Mb]],inversion/3'-3' ZNF207 NA AC090616.2 NA TranscriptionFactor NA NA NA NA +17:32373432 17:32093944 ZNF207--AC090616.5 BS_NGSG2KB6 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr17:0.26Mb]],inversion ZNF207 NA AC090616.5 NA TranscriptionFactor NA NA NA NA +17:32368003 16:13554646 ZNF207--U91319.1 BS_NGSG2KB6 ARRIBA frameshift 10 11 medium [INTERCHROMOSOMAL[chr17--chr16]],translocation ZNF207 NA U91319.1 NA TranscriptionFactor NA NA NA NA +17:32366757 16:13562707 ZNF207--U91319.1 BS_NGSG2KB6 ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr17--chr16]],translocation ZNF207 NA U91319.1 NA TranscriptionFactor NA NA NA NA +7:129410521 9:113275467 AHCYL2--PRPF4 BS_NPA6CZQF ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr7--chr9]],translocation AHCYL2 NA PRPF4 NA NA NA NA NA NA +9:27455133 9:19528138 MOB3B--SLC24A2 BS_NPA6CZQF ARRIBA frameshift 6 1 high [INTRACHROMOSOMAL[chr9:7.54Mb]],deletion MOB3B NA SLC24A2 NA NA NA NA NA NA +7:135598207 10:93670848 NUP205--FRA10AC1 BS_NPA6CZQF ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr7--chr10]],translocation NUP205 NA FRA10AC1 NA NA NA NA NA NA +12:39319906 6:117320030 KIF21A--ROS1 BS_PS0P3QJ3 STARFUSION in-frame 5 4 NA [INTERCHROMOSOMAL[chr12--chr6]] KIF21A NA ROS1 NA NA CosmicCensus, Oncogene, Kinase NA NA NA +12:39319906 6:117320030 KIF21A--ROS1 BS_PS0P3QJ3 ARRIBA in-frame 4 1 high [INTERCHROMOSOMAL[chr12--chr6]],translocation KIF21A NA ROS1 NA NA CosmicCensus, Oncogene, Kinase NA NA NA +12:39315932 6:117320030 KIF21A--ROS1 BS_PS0P3QJ3 ARRIBA in-frame 1 3 high [INTERCHROMOSOMAL[chr12--chr6]],translocation KIF21A NA ROS1 NA NA CosmicCensus, Oncogene, Kinase NA NA NA +12:39318073 6:117320030 KIF21A--ROS1 BS_PS0P3QJ3 ARRIBA in-frame 2 1 high [INTERCHROMOSOMAL[chr12--chr6]],translocation KIF21A NA ROS1 NA NA CosmicCensus, Oncogene, Kinase NA NA NA +12:39322668 6:117320030 KIF21A--ROS1 BS_PS0P3QJ3 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr12--chr6]],translocation KIF21A NA ROS1 NA NA CosmicCensus, Oncogene, Kinase NA NA NA +11:62824166 17:75332797 STX5--GRB2 BS_PS0P3QJ3 ARRIBA frameshift 1 1 high [INTERCHROMOSOMAL[chr11--chr17]],translocation STX5 NA GRB2 NA NA Oncogene NA NA NA +19:1043841 19:21809807 ABCA7--ZNF43 BS_PXCPK5XS ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr19:20.74Mb]],inversion ABCA7 NA ZNF43 NA NA TranscriptionFactor NA NA NA +19:16647120 1:156404601 AC008764.4--C1orf61 BS_PXCPK5XS ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr19--chr1]],translocation AC008764.4 NA C1orf61 NA NA NA NA NA NA +19:16574221 19:1007287 AC008764.8--GRIN3B BS_PXCPK5XS ARRIBA other 17 1 medium [INTRACHROMOSOMAL[chr19:15.56Mb]],inversion/3'-3' AC008764.8 NA GRIN3B NA NA NA NA NA NA +X:27398751 11:33742084 AC107419.1--FBXO3 BS_PXCPK5XS ARRIBA other 1 0 low [INTERCHROMOSOMAL[chrX--chr11]],translocation AC107419.1 NA FBXO3 NA NA NA NA NA NA +X:27336410 11:33742084 AC107419.1--FBXO3 BS_PXCPK5XS ARRIBA other 1 0 low [INTERCHROMOSOMAL[chrX--chr11]],translocation AC107419.1 NA FBXO3 NA NA NA NA NA NA +19:1083066 19:16572817 ARHGAP45--AC008764.8 BS_PXCPK5XS ARRIBA frameshift 115 30 high [INTRACHROMOSOMAL[chr19:15.49Mb]],inversion/3'-3' ARHGAP45 NA AC008764.8 NA NA NA NA NA NA +19:932647 19:887848 ARID3A--MED16 BS_PXCPK5XS ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr19:0.03Mb],LOCAL_INVERSION:+:-:[32563]],duplication/5'-5' ARID3A NA MED16 NA TranscriptionFactor NA NA NA NA +10:100286097 22:24334410 BLOC1S2--SPECC1L BS_PXCPK5XS ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr10--chr22]],translocation BLOC1S2 NA SPECC1L NA NA NA NA NA NA +10:100286097 22:24334410 BLOC1S2--SPECC1L-ADORA2A BS_PXCPK5XS ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr10--chr22]],translocation BLOC1S2 NA SPECC1L-ADORA2A NA NA NA NA NA NA +6:14118065 6:17114962 CD83--STMND1 BS_PXCPK5XS STARFUSION in-frame 13 3 NA [INTRACHROMOSOMAL[chr6:2.97Mb]] CD83 NA STMND1 NA NA NA NA NA NA +6:14118065 6:17114962 CD83--STMND1 BS_PXCPK5XS ARRIBA in-frame 13 3 high [INTRACHROMOSOMAL[chr6:2.97Mb]],deletion CD83 NA STMND1 NA NA NA NA NA NA +9:19336414 9:17332686 DENND4C--CNTLN BS_PXCPK5XS ARRIBA frameshift 18 9 high [INTRACHROMOSOMAL[chr9:1.73Mb]],inversion/3'-3' DENND4C NA CNTLN NA NA NA NA NA NA +17:55411257 17:55842872 MMD--AC090618.1 BS_PXCPK5XS ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr17:0.42Mb]],duplication MMD NA AC090618.1 NA NA NA NA NA NA +17:9023391 17:9378653 NTN1--STX8 BS_PXCPK5XS ARRIBA in-frame 2 0 low [GTEx,CCLE,ChimerSeq,INTRACHROMOSOMAL[chr17:0.01Mb],LOCAL_INVERSION:+:-:[6471]],inversion NTN1 NA STX8 NA NA NA NA NA TCGAFusion +6:162727662 6:163561982 PRKN--QKI BS_PXCPK5XS ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr6:0.69Mb]],inversion PRKN NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA +4:169106847 4:169406747 SH3RF1--NEK1 BS_PXCPK5XS STARFUSION frameshift 11 1 NA [INTRACHROMOSOMAL[chr4:0.12Mb]] SH3RF1 NA NEK1 NA NA Kinase, Kinase NA NA TCGAFusion +4:169106847 4:169406747 SH3RF1--NEK1 BS_PXCPK5XS ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr4:0.12Mb]],duplication SH3RF1 NA NEK1 NA NA Kinase, Kinase NA NA TCGAFusion +19:16647120 1:156404601 SMIM7--C1orf61 BS_PXCPK5XS ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr19--chr1]],translocation SMIM7 NA C1orf61 NA NA NA NA NA NA +17:9378552 17:9162813 STX8--NTN1 BS_PXCPK5XS ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr17:0.01Mb],LOCAL_INVERSION:-:+:[6471]],inversion STX8 NA NTN1 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGA1 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.01Mb],LOCAL_INVERSION:-:+:[9750]],inversion TAF7 NA PCDHGA1 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGA10 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.09Mb],LOCAL_INVERSION:-:+:[92166]],inversion TAF7 NA PCDHGA10 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGA11 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.10Mb]],inversion TAF7 NA PCDHGA11 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGA12 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.11Mb]],inversion TAF7 NA PCDHGA12 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGA2 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.02Mb],LOCAL_INVERSION:-:+:[17939]],inversion TAF7 NA PCDHGA2 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGA3 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.02Mb],LOCAL_INVERSION:-:+:[23008]],inversion TAF7 NA PCDHGA3 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGA4 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.03Mb],LOCAL_INVERSION:-:+:[34219]],inversion TAF7 NA PCDHGA4 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGA5 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_INVERSION:-:+:[43411]],inversion TAF7 NA PCDHGA5 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGA6 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.05Mb],LOCAL_INVERSION:-:+:[53172]],inversion TAF7 NA PCDHGA6 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGA7 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.06Mb],LOCAL_INVERSION:-:+:[61918]],inversion TAF7 NA PCDHGA7 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGA8 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.07Mb],LOCAL_INVERSION:-:+:[69336]],inversion TAF7 NA PCDHGA8 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGA9 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.08Mb],LOCAL_INVERSION:-:+:[82111]],inversion TAF7 NA PCDHGA9 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGB1 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.03Mb],LOCAL_INVERSION:-:+:[29281]],inversion TAF7 NA PCDHGB1 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGB2 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.04Mb],LOCAL_INVERSION:-:+:[39221]],inversion TAF7 NA PCDHGB2 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGB3 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.05Mb],LOCAL_INVERSION:-:+:[49574]],inversion TAF7 NA PCDHGB3 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGB4 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.07Mb],LOCAL_INVERSION:-:+:[66877]],inversion TAF7 NA PCDHGB4 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGB5 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.08Mb],LOCAL_INVERSION:-:+:[77166]],inversion TAF7 NA PCDHGB5 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGB6 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.09Mb],LOCAL_INVERSION:-:+:[87200]],inversion TAF7 NA PCDHGB6 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGB7 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.10Mb],LOCAL_INVERSION:-:+:[96824]],inversion TAF7 NA PCDHGB7 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGC3 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.16Mb]],inversion TAF7 NA PCDHGC3 NA NA TumorSuppressorGene NA NA NA +5:141320518 5:141494807 TAF7--PCDHGC4 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.16Mb]],inversion TAF7 NA PCDHGC4 NA NA NA NA NA NA +5:141320518 5:141494807 TAF7--PCDHGC5 BS_PXCPK5XS ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:0.17Mb]],inversion TAF7 NA PCDHGC5 NA NA NA NA NA NA +15:29761139 15:25405502 TJP1--UBE3A BS_PXCPK5XS ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr15:4.26Mb]],deletion TJP1 NA UBE3A NA NA Oncogene NA NA NA +19:1011656 19:16572808 TMEM259--AC008764.8 BS_PXCPK5XS ARRIBA frameshift 4 4 medium [INTRACHROMOSOMAL[chr19:15.55Mb]],duplication/5'-5' TMEM259 NA AC008764.8 NA NA NA NA NA NA +19:1010842 19:1081550 TMEM259--ARHGAP45 BS_PXCPK5XS STARFUSION in-frame 55 32 NA [INTRACHROMOSOMAL[chr19:0.04Mb],LOCAL_INVERSION:-:+:[44744]] TMEM259 NA ARHGAP45 NA NA NA NA NA NA +19:1011367 19:1081550 TMEM259--ARHGAP45 BS_PXCPK5XS ARRIBA frameshift 1 4 low [INTRACHROMOSOMAL[chr19:0.04Mb],LOCAL_INVERSION:-:+:[44744]],inversion TMEM259 NA ARHGAP45 NA NA NA NA NA NA +15:25405461 15:29800702 UBE3A--TJP1 BS_PXCPK5XS ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:4.26Mb]],duplication UBE3A NA TJP1 NA Oncogene NA NA NA NA +10:30984369 10:31461037 ZNF438--ZEB1 BS_PXCPK5XS ARRIBA other 1 0 low [HGNC_GENEFAM,INTRACHROMOSOMAL[chr10:0.29Mb]],inversion ZNF438 NA ZEB1 NA TranscriptionFactor CosmicCensus, TranscriptionFactor NA NA NA +10:114487958 10:97900248 ABLIM1--CRTAC1 BS_QKT3TJVK ARRIBA frameshift 47 18 high [INTRACHROMOSOMAL[chr10:16.40Mb]],inversion/5'-5' ABLIM1 NA CRTAC1 NA NA NA NA NA NA +12:4669817 19:45678318 AC005833.3--GIPR BS_QKT3TJVK ARRIBA other 17 2 medium [INTERCHROMOSOMAL[chr12--chr19]],translocation/5'-5' AC005833.3 NA GIPR NA NA NA NA NA NA +1:19210559 1:8656441 AL035413.1--RERE BS_QKT3TJVK ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr1:10.39Mb]],inversion AL035413.1 NA RERE NA NA Oncogene NA NA NA +12:32107544 12:69251129 BICD1--CPSF6 BS_QKT3TJVK ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr12:36.86Mb]],deletion BICD1 NA CPSF6 NA NA NA NA NA NA +12:4534157 12:24227161 C12orf4--SOX5-AS1 BS_QKT3TJVK ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr12:19.68Mb]],inversion C12orf4 NA SOX5-AS1 NA NA NA NA NA NA +16:1626166 12:57632133 CRAMP1--B4GALNT1 BS_QKT3TJVK ARRIBA frameshift 5 0 medium [INTERCHROMOSOMAL[chr16--chr12]],translocation CRAMP1 NA B4GALNT1 NA NA NA NA NA NA +12:31460194 12:25209911 DENND5B--KRAS BS_QKT3TJVK STARFUSION in-frame 34 11 NA [INTRACHROMOSOMAL[chr12:6.13Mb]] DENND5B NA KRAS NA NA CosmicCensus, Oncogene NA NA NA +12:31460194 12:25209911 DENND5B--KRAS BS_QKT3TJVK ARRIBA in-frame 33 10 high [INTRACHROMOSOMAL[chr12:6.13Mb]],deletion DENND5B NA KRAS NA NA CosmicCensus, Oncogene NA NA NA +1:62583184 4:105877200 DOCK7--INTS12 BS_QKT3TJVK ARRIBA frameshift 2 3 high [INTERCHROMOSOMAL[chr1--chr4]],translocation DOCK7 NA INTS12 NA NA NA NA NA NA +12:4746258 12:56083751 GALNT8--ERBB3 BS_QKT3TJVK STARFUSION frameshift 8 4 NA [INTRACHROMOSOMAL[chr12:51.23Mb]] GALNT8 NA ERBB3 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +12:4746258 12:56083751 GALNT8--ERBB3 BS_QKT3TJVK ARRIBA frameshift 8 2 high [INTRACHROMOSOMAL[chr12:51.23Mb]],deletion GALNT8 NA ERBB3 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +12:4745626 12:56083751 GALNT8--ERBB3 BS_QKT3TJVK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:51.23Mb]],deletion GALNT8 NA ERBB3 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +10:87513221 10:78232558 MINPP1--AC012560.1 BS_QKT3TJVK ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr10:8.83Mb]],duplication MINPP1 NA AC012560.1 NA NA NA NA NA NA +10:87513221 10:78396411 MINPP1--LINC00595 BS_QKT3TJVK ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr10:8.95Mb]],duplication MINPP1 NA LINC00595 NA NA NA NA NA NA +10:97633347 10:116416517 MORN4--SNRPGP6(7042)/PNLIPRP3(11350) BS_QKT3TJVK ARRIBA other 2 2 high [],duplication MORN4 NA SNRPGP6 PNLIPRP3 NA NA NA NA NA +2:2330967 2:9478222 MYT1L--IAH1 BS_QKT3TJVK ARRIBA other 55 20 high [INTRACHROMOSOMAL[chr2:7.14Mb]],inversion MYT1L NA IAH1 NA TranscriptionFactor NA NA NA NA +2:2330967 2:9481286 MYT1L--IAH1 BS_QKT3TJVK ARRIBA other 1 8 high [INTRACHROMOSOMAL[chr2:7.14Mb]],inversion MYT1L NA IAH1 NA TranscriptionFactor NA NA NA NA +12:4669817 19:45678318 NDUFA9--GIPR BS_QKT3TJVK ARRIBA frameshift 17 2 medium [INTERCHROMOSOMAL[chr12--chr19]],translocation/5'-5' NDUFA9 NA GIPR NA NA NA NA NA NA +5:53560760 5:53886713 NDUFS4--ARL15 BS_QKT3TJVK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:0.20Mb]],inversion NDUFS4 NA ARL15 NA NA NA NA NA NA +5:53604895 5:53886713 NDUFS4--ARL15 BS_QKT3TJVK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr5:0.20Mb]],inversion NDUFS4 NA ARL15 NA NA NA NA NA NA +10:87288442 10:83168248 NUTM2A-AS1--RNU6-478P(100177)/MARK2P15(143380) BS_QKT3TJVK ARRIBA other 7 1 high [],deletion NUTM2A-AS1 NA RNU6-478P MARK2P15 NA NA NA NA NA +17:47818528 8:75439061 OSBPL7--HNF4G BS_QKT3TJVK ARRIBA frameshift 23 6 medium [INTERCHROMOSOMAL[chr17--chr8]],translocation/5'-5' OSBPL7 NA HNF4G NA NA TranscriptionFactor NA NA NA +10:110876070 10:110604231 PDCD4--SMC3 BS_QKT3TJVK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:0.27Mb]],duplication PDCD4 NA SMC3 NA TumorSuppressorGene, Oncogene NA NA NA NA +12:41194188 12:2549943 PDZRN4--CACNA1C BS_QKT3TJVK ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr12:38.49Mb]],duplication PDZRN4 NA CACNA1C NA NA NA NA NA NA +12:41194188 12:2547450 PDZRN4--CACNA1C BS_QKT3TJVK ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr12:38.49Mb]],duplication PDZRN4 NA CACNA1C NA NA NA NA NA NA +1:2181718 1:20779530 PRKCZ--HP1BP3 BS_QKT3TJVK ARRIBA other 1 3 medium [INTRACHROMOSOMAL[chr1:18.56Mb]],inversion PRKCZ NA HP1BP3 NA Kinase NA NA NA NA +1:2175313 1:20776750 PRKCZ--HP1BP3 BS_QKT3TJVK ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr1:18.56Mb]],inversion PRKCZ NA HP1BP3 NA Kinase NA NA NA NA +7:121873557 7:116654776 PTPRZ1--LINC01510(39956)/MET(17614) BS_QKT3TJVK ARRIBA frameshift 4 0 medium [],duplication PTPRZ1 NA LINC01510 MET NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA +12:59705018 12:122538339 SLC16A7--KNTC1 BS_QKT3TJVK STARFUSION in-frame 65 13 NA [INTRACHROMOSOMAL[chr12:62.74Mb]] SLC16A7 NA KNTC1 NA NA NA NA NA NA +12:59705018 12:122538339 SLC16A7--KNTC1 BS_QKT3TJVK ARRIBA in-frame 63 13 high [INTRACHROMOSOMAL[chr12:62.74Mb]],deletion SLC16A7 NA KNTC1 NA NA NA NA NA NA +12:59705018 12:122539676 SLC16A7--KNTC1 BS_QKT3TJVK ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr12:62.74Mb]],deletion SLC16A7 NA KNTC1 NA NA NA NA NA NA +12:59655250 12:122538339 SLC16A7--KNTC1 BS_QKT3TJVK ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr12:62.74Mb]],deletion SLC16A7 NA KNTC1 NA NA NA NA NA NA +6:111483665 6:111720062 TRAF3IP2-AS1--FYN BS_QKT3TJVK ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr6:0.06Mb],LOCAL_INVERSION:+:-:[62030]],inversion TRAF3IP2-AS1 NA FYN NA NA Kinase, Oncogene, Kinase NA NA NA +12:69370975 12:122871061 YEATS4--VPS37B BS_QKT3TJVK ARRIBA frameshift 1 2 low [INTRACHROMOSOMAL[chr12:53.47Mb]],inversion YEATS4 NA VPS37B NA NA NA NA NA NA +12:69397803 12:122920329 YEATS4--VPS37B(23885)/ABCB9(622) BS_QKT3TJVK ARRIBA frameshift 4 3 medium [],inversion YEATS4 NA VPS37B ABCB9 NA NA NA NA NA +12:133131014 12:133234378 ZNF10--ANHX BS_QKT3TJVK ARRIBA other 7 1 high [INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_INVERSION:+:-:[58847]],inversion ZNF10 NA ANHX NA TranscriptionFactor TranscriptionFactor NA NA NA +12:133143622 12:133234378 ZNF10--ANHX BS_QKT3TJVK ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr12:0.06Mb],LOCAL_INVERSION:+:-:[58847]],inversion ZNF10 NA ANHX NA TranscriptionFactor TranscriptionFactor NA NA NA +12:133131014 12:133240514 ZNF10--Y_RNA(1965) BS_QKT3TJVK ARRIBA other 2 1 high [],inversion ZNF10 NA Y_RNA NA TranscriptionFactor NA NA NA NA +17:44958062 6:5216738 AC015936.1(9123)/C1QL1(1631)--LYRM4 BS_QNNX91SM ARRIBA other 2 0 medium [],translocation AC015936.1 C1QL1 LYRM4 NA NA NA NA NA NA +4:113174413 16:29082044 ANK2--AC009093.3 BS_QNNX91SM ARRIBA other 6 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation ANK2 NA AC009093.3 NA NA NA NA NA NA +3:191329723 3:192335464 CCDC50--FGF12 BS_QNNX91SM ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr3:0.74Mb]],inversion CCDC50 NA FGF12 NA NA Oncogene NA NA NA +2:173367831 7:135209755 CDCA7--WDR91 BS_QNNX91SM ARRIBA other 1 1 high [INTERCHROMOSOMAL[chr2--chr7]],translocation CDCA7 NA WDR91 NA NA NA NA NA NA +8:13276262 8:90687361 DLC1--TMEM64 BS_QNNX91SM ARRIBA frameshift 2 3 high [INTRACHROMOSOMAL[chr8:77.02Mb]],inversion/5'-5' DLC1 NA TMEM64 NA TumorSuppressorGene, Oncogene NA NA NA NA +14:49625429 14:44682733 DNAAF2--AL356022.1(144220)/LINC02302(80424) BS_QNNX91SM ARRIBA other 2 1 medium [],inversion DNAAF2 NA AL356022.1 LINC02302 NA NA NA NA NA +2:72465160 2:64249839 EXOC6B--AC012368.1 BS_QNNX91SM ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr2:7.92Mb]],deletion/5'-5' EXOC6B NA AC012368.1 NA NA NA NA NA NA +2:72465160 2:64201358 EXOC6B--LINC00309 BS_QNNX91SM ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr2:7.97Mb]],deletion EXOC6B NA LINC00309 NA NA NA NA NA NA +3:192727181 3:191357088 FGF12--CCDC50 BS_QNNX91SM ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr3:0.74Mb]],inversion FGF12 NA CCDC50 NA Oncogene NA NA NA NA +14:51651996 10:64286466 FRMD6--DBF4P1(115616)/RPL17P35(333908) BS_QNNX91SM ARRIBA other 19 0 high [],translocation FRMD6 NA DBF4P1 RPL17P35 NA NA NA NA NA +14:51651996 10:64301516 FRMD6--DBF4P1(130666)/RPL17P35(318858) BS_QNNX91SM ARRIBA other 8 2 high [],translocation FRMD6 NA DBF4P1 RPL17P35 NA NA NA NA NA +2:64018938 2:63856306 VPS54--UGP2 BS_QNNX91SM ARRIBA other 1 0 low [FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_INVERSION:-:+:[584]],inversion VPS54 NA UGP2 NA NA NA NA NA NA +2:63912345 2:63883960 VPS54--UGP2 BS_QNNX91SM ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr2:0.00Mb],LOCAL_INVERSION:-:+:[584]],inversion VPS54 NA UGP2 NA NA NA NA NA NA +16:22141692 20:3755607 VWA3A--C20orf27 BS_QNNX91SM ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr16--chr20]],translocation VWA3A NA C20orf27 NA NA NA NA NA NA +3:44579762 17:18098268 AC099669.1--DRG2 BS_R7NTZR4C ARRIBA other 5 1 high [INTERCHROMOSOMAL[chr3--chr17]],translocation AC099669.1 NA DRG2 NA NA NA NA NA NA +16:14766444 16:14932793 AC136443.2--AC138932.1 BS_R7NTZR4C ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.14Mb]],duplication/5'-5' AC136443.2 NA AC138932.1 NA NA NA NA NA NA +16:14766444 16:14932793 AC136443.2--NPIPA1 BS_R7NTZR4C ARRIBA other 5 0 low [INTRACHROMOSOMAL[chr16:0.15Mb]],duplication/5'-5' AC136443.2 NA NPIPA1 NA NA NA NA NA NA +15:100330889 2:19125387 ADAMTS17--LINC01376 BS_R7NTZR4C ARRIBA frameshift 5 1 high [INTERCHROMOSOMAL[chr15--chr2]],translocation ADAMTS17 NA LINC01376 NA NA NA NA NA NA +15:100254136 15:99161867 ADAMTS17--TTC23 BS_R7NTZR4C ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr15:0.72Mb]],deletion ADAMTS17 NA TTC23 NA NA NA NA NA NA +X:41337465 18:23479317 DDX3X--RIOK3 BS_R7NTZR4C ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chrX--chr18]],translocation DDX3X NA RIOK3 NA TumorSuppressorGene, CosmicCensus Kinase NA NA NA +4:152411303 4:150193138 FBXW7--DCLK2 BS_R7NTZR4C ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr4:2.06Mb]],inversion FBXW7 NA DCLK2 NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, Kinase NA NA NA +4:152411303 4:150247603 FBXW7--DCLK2 BS_R7NTZR4C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr4:2.06Mb]],inversion FBXW7 NA DCLK2 NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, Kinase NA NA NA +15:98708107 15:99976222 IGF1R--ADAMTS17 BS_R7NTZR4C ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr15:1.01Mb]],inversion IGF1R NA ADAMTS17 NA Kinase, Oncogene, Kinase NA NA NA NA +15:98649676 15:100281401 IGF1R--ADAMTS17 BS_R7NTZR4C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:1.01Mb]],inversion IGF1R NA ADAMTS17 NA Kinase, Oncogene, Kinase NA NA NA NA +15:98708107 15:99690241 IGF1R--MEF2A BS_R7NTZR4C ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr15:0.60Mb]],deletion IGF1R NA MEF2A NA Kinase, Oncogene, Kinase TranscriptionFactor NA NA NA +15:98708107 15:99156297 IGF1R--TTC23 BS_R7NTZR4C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:0.17Mb]],inversion IGF1R NA TTC23 NA Kinase, Oncogene, Kinase NA NA NA NA +15:98708107 15:99228732 IGF1R--TTC23 BS_R7NTZR4C ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr15:0.17Mb]],inversion IGF1R NA TTC23 NA Kinase, Oncogene, Kinase NA NA NA NA +14:38762924 14:38334252 LINC00639--AL161751.1(22322)/AL357094.1(271003) BS_R7NTZR4C ARRIBA other 1 1 high [],deletion LINC00639 NA AL161751.1 AL357094.1 NA NA NA NA NA +15:99675458 15:95021044 MEF2A--AC087633.2 BS_R7NTZR4C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:4.40Mb]],duplication MEF2A NA AC087633.2 NA TranscriptionFactor NA NA NA NA +15:99633173 15:95021044 MEF2A--AC087633.2 BS_R7NTZR4C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:4.40Mb]],duplication MEF2A NA AC087633.2 NA TranscriptionFactor NA NA NA NA +15:99566104 15:100402865 MEF2A--CERS3 BS_R7NTZR4C ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr15:0.68Mb]],inversion MEF2A NA CERS3 NA TranscriptionFactor NA NA NA NA +15:99645764 15:100529075 MEF2A--CERS3 BS_R7NTZR4C ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:0.68Mb]],inversion MEF2A NA CERS3 NA TranscriptionFactor NA NA NA NA +15:99566104 15:98891325 MEF2A--IGF1R BS_R7NTZR4C ARRIBA other 4 0 medium [INTRACHROMOSOMAL[chr15:0.60Mb]],duplication MEF2A NA IGF1R NA TranscriptionFactor Kinase, Oncogene, Kinase NA NA NA +15:99598511 15:99386030 MEF2A--LRRC28 BS_R7NTZR4C ARRIBA other 2 0 medium [CCLE,GTEx,INTRACHROMOSOMAL[chr15:0.17Mb]],duplication MEF2A NA LRRC28 NA TranscriptionFactor NA NA NA TCGAFusion +15:99598511 15:99333923 MEF2A--LRRC28 BS_R7NTZR4C ARRIBA other 1 0 low [CCLE,GTEx,INTRACHROMOSOMAL[chr15:0.17Mb]],duplication MEF2A NA LRRC28 NA TranscriptionFactor NA NA NA TCGAFusion +15:99566104 15:99352369 MEF2A--LRRC28 BS_R7NTZR4C ARRIBA other 1 0 low [CCLE,GTEx,INTRACHROMOSOMAL[chr15:0.17Mb]],duplication MEF2A NA LRRC28 NA TranscriptionFactor NA NA NA TCGAFusion +17:17147387 17:18098270 MPRIP--DRG2 BS_R7NTZR4C STARFUSION in-frame 79 11 NA [CCLE,INTRACHROMOSOMAL[chr17:0.87Mb]] MPRIP NA DRG2 NA NA NA NA NA NA +17:17147387 17:18098270 MPRIP--DRG2 BS_R7NTZR4C ARRIBA in-frame 76 11 high [CCLE,INTRACHROMOSOMAL[chr17:0.87Mb]],deletion MPRIP NA DRG2 NA NA NA NA NA NA +17:17147387 17:18100569 MPRIP--DRG2 BS_R7NTZR4C ARRIBA in-frame 1 0 low [CCLE,INTRACHROMOSOMAL[chr17:0.87Mb]],deletion MPRIP NA DRG2 NA NA NA NA NA NA +1:75300612 8:121335812 SLC44A5--AC068413.1(216058)/RPL35AP19(44325) BS_R7NTZR4C ARRIBA frameshift 3 1 high [],translocation SLC44A5 NA AC068413.1 RPL35AP19 NA NA NA NA NA +15:99156148 15:99997589 TTC23--ADAMTS17 BS_R7NTZR4C ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr15:0.72Mb]],duplication TTC23 NA ADAMTS17 NA NA NA NA NA NA +20:21340852 4:162475553 XRN2--MTHFD2P4(151646)/TOMM22P4(46129) BS_R7NTZR4C ARRIBA frameshift 43 28 high [],translocation XRN2 NA MTHFD2P4 TOMM22P4 NA NA NA NA NA +3:44579762 17:18098268 ZKSCAN7--DRG2 BS_R7NTZR4C ARRIBA other 5 1 high [INTERCHROMOSOMAL[chr3--chr17]],translocation/3'-3' ZKSCAN7 NA DRG2 NA TranscriptionFactor NA NA NA NA +5:43122177 5:50764362 ZNF131--PARP8 BS_R7NTZR4C ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr5:7.47Mb]],inversion/3'-3' ZNF131 NA PARP8 NA TranscriptionFactor NA NA NA NA +3:44579762 17:18098268 ZNF660--DRG2 BS_R7NTZR4C ARRIBA other 5 1 high [INTERCHROMOSOMAL[chr3--chr17]],translocation/3'-3' ZNF660 NA DRG2 NA TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_R9B92M75 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_R9B92M75 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:115262930 3:115676013 AC046136.1--GAP43 BS_R9B92M75 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA +9:136977692 12:122858102 AL807752.7--HIP1R BS_R9B92M75 ARRIBA in-frame 2 1 low [INTERCHROMOSOMAL[chr9--chr12]],translocation AL807752.7 NA HIP1R NA NA NA NA NA NA +5:11732136 5:10748271 CTNND2--DAP BS_R9B92M75 ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr5:0.21Mb]],deletion CTNND2 NA DAP NA CosmicCensus, Oncogene NA NA NA TCGAFusion +5:10748175 5:11236823 DAP--CTNND2 BS_R9B92M75 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr5:0.21Mb]],duplication DAP NA CTNND2 NA NA CosmicCensus, Oncogene NA NA TCGAFusion +4:163700813 4:150193138 MARCH1--DCLK2 BS_R9B92M75 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr4:13.27Mb]],inversion MARCH1 NA DCLK2 NA NA Kinase, Kinase NA NA NA +9:128393142 9:95086682 MIR219A2--C9orf3 BS_R9B92M75 ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr9:33.31Mb]],inversion MIR219A2 NA C9orf3 NA NA NA NA NA NA +18:58252054 18:76990060 NEDD4L--MBP BS_R9B92M75 ARRIBA in-frame 1 0 low [GTEx,INTRACHROMOSOMAL[chr18:18.58Mb]],inversion NEDD4L NA MBP NA TumorSuppressorGene NA NA NA NA +18:58044708 18:77009926 NEDD4L--MBP BS_R9B92M75 ARRIBA in-frame 1 0 low [GTEx,INTRACHROMOSOMAL[chr18:18.58Mb]],inversion NEDD4L NA MBP NA TumorSuppressorGene NA NA NA NA +9:136977692 12:122858102 PTGDS--HIP1R BS_R9B92M75 ARRIBA in-frame 2 1 low [GTEx,ChimerSeq,INTERCHROMOSOMAL[chr9--chr12]],translocation PTGDS NA HIP1R NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_R9B92M75 ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +X:38561627 X:37406209 TSPAN7--PRRG1 BS_R9B92M75 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chrX:1.10Mb]],duplication TSPAN7 NA PRRG1 NA NA NA NA NA NA +19:36310955 22:25478310 AC012617.1--AL008721.2 BS_RX1YTZ7F ARRIBA other 26 1 medium [INTERCHROMOSOMAL[chr19--chr22]],translocation/5'-5' AC012617.1 NA AL008721.2 NA NA NA NA NA NA +1:180314692 1:180682360 ACBD6--XPR1 BS_RX1YTZ7F ARRIBA frameshift 1 0 low [ChimerSeq,INTRACHROMOSOMAL[chr1:0.13Mb]],inversion ACBD6 NA XPR1 NA NA NA NA NA NA +4:61201765 4:41143142 ADGRL3--APBB2 BS_RX1YTZ7F STARFUSION other 13 4 NA [INTRACHROMOSOMAL[chr4:19.98Mb]] ADGRL3 NA APBB2 NA NA NA NA NA NA +4:61201765 4:41143142 ADGRL3--APBB2 BS_RX1YTZ7F ARRIBA other 12 4 high [INTRACHROMOSOMAL[chr4:19.98Mb]],inversion ADGRL3 NA APBB2 NA NA NA NA NA NA +4:61202231 4:41143142 ADGRL3--APBB2 BS_RX1YTZ7F ARRIBA other 1 4 high [INTRACHROMOSOMAL[chr4:19.98Mb]],inversion ADGRL3 NA APBB2 NA NA NA NA NA NA +4:61201765 4:41100750 ADGRL3--APBB2 BS_RX1YTZ7F ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr4:19.98Mb]],inversion ADGRL3 NA APBB2 NA NA NA NA NA NA +1:247640429 1:247860617 AL390860.1--TRIM58 BS_RX1YTZ7F STARFUSION other 9 5 NA [INTRACHROMOSOMAL[chr1:0.11Mb]] AL390860.1 NA TRIM58 NA NA NA NA NA NA +19:35781252 19:37267799 ARHGAP33--AC016590.1 BS_RX1YTZ7F STARFUSION other 5 3 NA [INTRACHROMOSOMAL[chr19:1.48Mb]] ARHGAP33 NA AC016590.1 NA NA NA NA NA NA +19:35781252 19:37267799 ARHGAP33--AC016590.1 BS_RX1YTZ7F ARRIBA frameshift 5 3 high [INTRACHROMOSOMAL[chr19:1.48Mb]],inversion ARHGAP33 NA AC016590.1 NA NA NA NA NA NA +4:15470057 4:13676130 CC2D2A--LINC01182 BS_RX1YTZ7F ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr4:1.49Mb]],inversion/3'-3' CC2D2A NA LINC01182 NA NA NA NA NA NA +9:114258594 9:114194404 COL27A1--COL27A1 BS_RX1YTZ7F ARRIBA in-frame 3 0 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr9:0.16Mb]],duplication/non-canonical_splicing COL27A1 NA COL27A1 NA NA NA NA NA NA +18:31101903 13:99122074 DSC2--DOCK9-AS2(33449)/RPS6P23(51519) BS_RX1YTZ7F ARRIBA frameshift 34 4 high [],translocation DSC2 NA DOCK9-AS2 RPS6P23 NA NA NA NA NA +2:25673386 2:27894533 DTNB--BABAM2 BS_RX1YTZ7F ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr2:2.22Mb]],inversion DTNB NA BABAM2 NA NA NA NA NA NA +2:25419515 2:28338450 DTNB--BABAM2 BS_RX1YTZ7F ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:2.22Mb]],inversion DTNB NA BABAM2 NA NA NA NA NA NA +4:46388636 4:27209750 GABRA2--AC024132.1 BS_RX1YTZ7F STARFUSION other 6 4 NA [INTRACHROMOSOMAL[chr4:19.03Mb]] GABRA2 NA AC024132.1 NA NA NA NA NA NA +4:46388636 4:27209750 GABRA2--AC024132.1 BS_RX1YTZ7F ARRIBA frameshift 5 2 high [INTRACHROMOSOMAL[chr4:19.03Mb]],deletion GABRA2 NA AC024132.1 NA NA NA NA NA NA +4:46388636 4:27150909 GABRA2--AC024132.2(10858)/AC024132.1(56596) BS_RX1YTZ7F ARRIBA frameshift 2 0 medium [],deletion GABRA2 NA AC024132.2 AC024132.1 NA NA NA NA NA +4:46388636 4:27167106 GABRA2--AC024132.2(27055)/AC024132.1(40399) BS_RX1YTZ7F ARRIBA frameshift 23 2 high [],deletion GABRA2 NA AC024132.2 AC024132.1 NA NA NA NA NA +4:46388636 4:27194055 GABRA2--AC024132.2(54004)/AC024132.1(13450) BS_RX1YTZ7F ARRIBA frameshift 1 0 low [],inversion GABRA2 NA AC024132.2 AC024132.1 NA NA NA NA NA +4:46388636 4:27194098 GABRA2--AC024132.2(54047)/AC024132.1(13407) BS_RX1YTZ7F ARRIBA frameshift 5 2 high [],deletion GABRA2 NA AC024132.2 AC024132.1 NA NA NA NA NA +4:46388636 4:27206151 GABRA2--AC024132.2(66100)/AC024132.1(1354) BS_RX1YTZ7F ARRIBA frameshift 2 1 high [],deletion GABRA2 NA AC024132.2 AC024132.1 NA NA NA NA NA +20:63559282 20:61844668 HELZ2--CDH4 BS_RX1YTZ7F ARRIBA in-frame 3 1 high [INTRACHROMOSOMAL[chr20:1.62Mb]],inversion HELZ2 NA CDH4 NA NA TumorSuppressorGene NA NA NA +19:43594809 19:43041398 IRGQ--AC004784.1 BS_RX1YTZ7F ARRIBA frameshift 8 6 high [INTRACHROMOSOMAL[chr19:0.41Mb]],deletion/5'-5' IRGQ NA AC004784.1 NA NA NA NA NA NA +19:43594809 19:43035960 IRGQ--CEACAMP8 BS_RX1YTZ7F STARFUSION other 50 6 NA [INTRACHROMOSOMAL[chr19:0.54Mb]] IRGQ NA CEACAMP8 NA NA NA NA NA NA +19:43594809 19:43035960 IRGQ--CEACAMP8 BS_RX1YTZ7F ARRIBA frameshift 49 1 high [INTRACHROMOSOMAL[chr19:0.54Mb]],deletion IRGQ NA CEACAMP8 NA NA NA NA NA NA +19:34328151 19:27625525 KIAA0355--AC073534.1(3462100)/ERVK-28(12958) BS_RX1YTZ7F ARRIBA frameshift 14 2 high [],duplication KIAA0355 NA AC073534.1 ERVK-28 NA NA NA NA NA +19:36321300 19:36640043 LINC00665--ZNF461 BS_RX1YTZ7F ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr19:0.31Mb]],duplication LINC00665 NA ZNF461 NA NA TranscriptionFactor NA NA NA +21:28048537 21:25683883 LINC01697--JAM2 BS_RX1YTZ7F STARFUSION other 35 3 NA [INTRACHROMOSOMAL[chr21:2.33Mb]] LINC01697 NA JAM2 NA NA NA NA NA NA +21:28048537 21:25683883 LINC01697--JAM2 BS_RX1YTZ7F ARRIBA other 31 2 high [INTRACHROMOSOMAL[chr21:2.33Mb]],duplication LINC01697 NA JAM2 NA NA NA NA NA NA +10:89225092 12:121330672 LIPA--ANAPC5 BS_RX1YTZ7F ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr10--chr12]],translocation LIPA NA ANAPC5 NA NA NA NA NA NA +17:41806147 7:119557949 P3H4--AC079791.1(378800)/LINC02476(146607) BS_RX1YTZ7F ARRIBA frameshift 13 20 medium [],translocation P3H4 NA AC079791.1 LINC02476 NA NA NA NA NA +11:45917458 11:56234333 PEX16--OR5T2(78)/OR5T3(17867) BS_RX1YTZ7F ARRIBA frameshift 3 0 medium [],duplication PEX16 NA OR5T2 OR5T3 NA NA NA NA NA +11:45917458 11:56226439 PEX16--OR8J2(11217)/OR5T2(4843) BS_RX1YTZ7F ARRIBA frameshift 2 3 high [],duplication PEX16 NA OR8J2 OR5T2 NA NA NA NA NA +21:45285678 5:113776862 POFUT2--YTHDC2(181577)/AC106789.1(279144) BS_RX1YTZ7F ARRIBA frameshift 8 1 high [],translocation POFUT2 NA YTHDC2 AC106789.1 NA NA NA NA NA +22:50372150 22:50099443 PPP6R2--MOV10L1 BS_RX1YTZ7F STARFUSION other 4 5 NA [CCLE,INTRACHROMOSOMAL[chr22:0.18Mb]] PPP6R2 NA MOV10L1 NA NA NA NA NA NA +22:50372150 22:50099443 PPP6R2--MOV10L1 BS_RX1YTZ7F ARRIBA other 4 5 high [CCLE,INTRACHROMOSOMAL[chr22:0.18Mb]],duplication PPP6R2 NA MOV10L1 NA NA NA NA NA NA +15:65869625 15:66128411 RAB11A--MEGF11 BS_RX1YTZ7F ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_INVERSION:+:-:[3088]],inversion RAB11A NA MEGF11 NA NA NA NA NA NA +6:111482750 6:111720062 REV3L--FYN BS_RX1YTZ7F ARRIBA frameshift 1 0 low [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion +6:111482750 6:111674630 REV3L--FYN BS_RX1YTZ7F ARRIBA in-frame 1 0 low [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion +1:159854968 1:188042892 SNHG28--AL645474.1(328157)/AL136372.1(24406) BS_RX1YTZ7F ARRIBA other 2 1 medium [],deletion SNHG28 NA AL645474.1 AL136372.1 NA NA NA NA NA +X:7305183 X:6989335 STS--RPS27AP17 BS_RX1YTZ7F STARFUSION other 13 4 NA [INTRACHROMOSOMAL[chrX:0.23Mb]] STS NA RPS27AP17 NA NA NA NA NA NA +X:7305183 X:6990906 STS--RPS27AP17(1123)/PUDP(58014) BS_RX1YTZ7F ARRIBA frameshift 2 3 high [],duplication STS NA RPS27AP17 PUDP NA NA NA NA NA +4:4544907 4:4820406 STX18-AS1--AC092437.1 BS_RX1YTZ7F STARFUSION other 6 2 NA [INTRACHROMOSOMAL[chr4:0.11Mb]] STX18-AS1 NA AC092437.1 NA NA NA NA NA NA +7:866067 7:255849 SUN1--FAM20C BS_RX1YTZ7F ARRIBA frameshift 1 0 low [GTEx,INTRACHROMOSOMAL[chr7:0.56Mb]],duplication SUN1 NA FAM20C NA NA NA NA NA NA +1:180632270 1:180430262 XPR1--ACBD6 BS_RX1YTZ7F ARRIBA in-frame 1 0 low [GTEx,INTRACHROMOSOMAL[chr1:0.13Mb]],inversion XPR1 NA ACBD6 NA NA NA NA NA NA +19:36657617 22:26359106 ZNF461--SEZ6L BS_RX1YTZ7F ARRIBA other 4 1 medium [INTERCHROMOSOMAL[chr19--chr22]],translocation/5'-5' ZNF461 NA SEZ6L NA TranscriptionFactor NA NA NA NA +4:497127 4:13829780 ZNF721--LINC01182 BS_RX1YTZ7F ARRIBA other 6 3 high [INTRACHROMOSOMAL[chr4:13.16Mb]],inversion ZNF721 NA LINC01182 NA TranscriptionFactor NA NA NA NA +4:499056 4:13829780 ZNF721--LINC01182 BS_RX1YTZ7F ARRIBA other 6 1 high [INTRACHROMOSOMAL[chr4:13.16Mb]],inversion ZNF721 NA LINC01182 NA TranscriptionFactor NA NA NA NA +7:9189560 7:8612991 AC004852.2--NXPH1 BS_S6Q7NKA3 ARRIBA other 3 1 medium [INTRACHROMOSOMAL[chr7:0.33Mb]],deletion/5'-5' AC004852.2 NA NXPH1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_S6Q7NKA3 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_S6Q7NKA3 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:115262930 3:115676013 AC046136.1--GAP43 BS_S6Q7NKA3 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA +7:110331817 7:135165596 AC073114.1(115437)/AC092167.1(100422)--TMEM140 BS_S6Q7NKA3 ARRIBA other 29 7 medium [],deletion AC073114.1 AC092167.1 TMEM140 NA NA NA NA NA NA +7:152367263 7:55773180 AC104692.1--PSPHP1 BS_S6Q7NKA3 STARFUSION other 16 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +15:85585823 2:43578607 AKAP13--THADA BS_S6Q7NKA3 ARRIBA frameshift 4 1 high [INTERCHROMOSOMAL[chr15--chr2]],translocation AKAP13 NA THADA NA Oncogene Oncogene NA NA NA +8:61680970 16:48362432 ASPH--SIAH1 BS_S6Q7NKA3 ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr8--chr16]],translocation ASPH NA SIAH1 NA NA TumorSuppressorGene NA NA NA +3:59001741 3:39443699 C3orf67--RPSA(31157)/MOBP(23499) BS_S6Q7NKA3 ARRIBA other 1 2 medium [],deletion C3orf67 NA RPSA MOBP NA NA NA NA NA +17:16343623 17:17635273 CENPV--AC020558.3(17528)/SMCR2(38753) BS_S6Q7NKA3 ARRIBA frameshift 4 1 medium [],inversion CENPV NA AC020558.3 SMCR2 NA NA NA NA NA +3:140176073 13:66305028 CLSTN2--PCDH9 BS_S6Q7NKA3 ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr3--chr13]],translocation CLSTN2 NA PCDH9 NA NA TumorSuppressorGene NA NA NA +15:40030456 15:69261087 EIF2AK4--GLCE BS_S6Q7NKA3 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr15:29.12Mb]],deletion EIF2AK4 NA GLCE NA Kinase NA NA NA NA +3:52690704 20:20412148 GNL3--RALGAPA2 BS_S6Q7NKA3 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr3--chr20]],translocation GNL3 NA RALGAPA2 NA NA NA NA NA NA +17:12034331 17:13960865 MAP2K4--COX10-AS1 BS_S6Q7NKA3 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr17:1.61Mb]],inversion MAP2K4 NA COX10-AS1 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA +22:20507746 22:25830810 MED15--MYO18B BS_S6Q7NKA3 ARRIBA frameshift 12 3 high [INTRACHROMOSOMAL[chr22:5.15Mb]],inversion/3'-3' MED15 NA MYO18B NA NA TumorSuppressorGene NA NA NA +9:94446936 20:56513315 MFSD14B--RTFDC1 BS_S6Q7NKA3 STARFUSION in-frame 54 21 NA [INTERCHROMOSOMAL[chr9--chr20]] MFSD14B NA RTFDC1 NA NA NA NA NA NA +9:94441099 20:56513315 MFSD14B--RTFDC1 BS_S6Q7NKA3 STARFUSION in-frame 21 21 NA [INTERCHROMOSOMAL[chr9--chr20]] MFSD14B NA RTFDC1 NA NA NA NA NA NA +9:94446936 20:56513315 MFSD14B--RTFDC1 BS_S6Q7NKA3 ARRIBA in-frame 54 19 high [INTERCHROMOSOMAL[chr9--chr20]],translocation MFSD14B NA RTFDC1 NA NA NA NA NA NA +9:94441099 20:56513315 MFSD14B--RTFDC1 BS_S6Q7NKA3 ARRIBA in-frame 20 4 high [INTERCHROMOSOMAL[chr9--chr20]],translocation MFSD14B NA RTFDC1 NA NA NA NA NA NA +11:20078104 4:55772622 NAV2--NMU(135924)/RNU6-276P(26014) BS_S6Q7NKA3 ARRIBA frameshift 8 3 high [],translocation NAV2 NA NMU RNU6-276P NA NA NA NA NA +17:67738355 20:20412148 NOL11--RALGAPA2 BS_S6Q7NKA3 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr17--chr20]],translocation NOL11 NA RALGAPA2 NA NA NA NA NA NA +14:33055994 9:121870748 NPAS3--TTLL11 BS_S6Q7NKA3 ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr14--chr9]],translocation NPAS3 NA TTLL11 NA TranscriptionFactor NA NA NA NA +17:29285992 19:46821224 NUFIP2--HNRNPMP2(11041)/AC008622.1(5671) BS_S6Q7NKA3 ARRIBA frameshift 3 2 high [],translocation NUFIP2 NA HNRNPMP2 AC008622.1 NA NA NA NA NA +7:10990847 7:9084548 PHF14--AC004852.2 BS_S6Q7NKA3 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:1.78Mb]],inversion PHF14 NA AC004852.2 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_S6Q7NKA3 ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +20:56484189 9:94451456 RTFDC1--MFSD14B BS_S6Q7NKA3 STARFUSION in-frame 5 3 NA [INTERCHROMOSOMAL[chr20--chr9]] RTFDC1 NA MFSD14B NA NA NA NA NA NA +20:56484189 9:94451456 RTFDC1--MFSD14B BS_S6Q7NKA3 ARRIBA in-frame 5 3 high [INTERCHROMOSOMAL[chr20--chr9]],translocation RTFDC1 NA MFSD14B NA NA NA NA NA NA +3:101513091 3:103540590 SENP7--AC046144.1 BS_S6Q7NKA3 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr3:2.03Mb]],duplication SENP7 NA AC046144.1 NA NA NA NA NA NA +3:101501070 3:103551555 SENP7--AC046144.1(11068)/TUBBP11(79106) BS_S6Q7NKA3 ARRIBA frameshift 1 3 high [],duplication SENP7 NA AC046144.1 TUBBP11 NA NA NA NA NA +17:29929938 17:13664249 SSH2--HS3ST3A1(62322)/COX10-AS1(92229) BS_S6Q7NKA3 ARRIBA frameshift 2 0 high [],inversion SSH2 NA HS3ST3A1 COX10-AS1 NA NA NA NA NA +17:29929938 17:18699154 SSH2--TRIM16L BS_S6Q7NKA3 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr17:10.89Mb]],inversion SSH2 NA TRIM16L NA NA NA NA NA NA +17:9545172 17:30804108 STX8--CRLF3 BS_S6Q7NKA3 ARRIBA frameshift 8 3 high [INTRACHROMOSOMAL[chr17:21.19Mb]],duplication STX8 NA CRLF3 NA NA NA NA NA NA +2:43581741 1:199955873 THADA--AL445687.2(46225)/RNU6-716P(52632) BS_S6Q7NKA3 ARRIBA frameshift 6 1 high [],translocation THADA NA AL445687.2 RNU6-716P Oncogene NA NA NA NA +7:159142446 7:159175971 VIPR2--VIPR2(31014)/PIP5K1P2(55464) BS_S6Q7NKA3 ARRIBA frameshift 18 5 high [],inversion VIPR2 NA VIPR2 PIP5K1P2 NA NA NA NA NA +5:766698 20:20412148 ZDHHC11B--RALGAPA2 BS_S6Q7NKA3 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr5--chr20]],translocation ZDHHC11B NA RALGAPA2 NA NA NA NA NA NA +5:766698 19:9828592 ZDHHC11B--UBL5 BS_S6Q7NKA3 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr5--chr19]],translocation ZDHHC11B NA UBL5 NA NA NA NA NA NA +20:47283571 17:50014155 ZMYND8--AC009720.1 BS_S6Q7NKA3 ARRIBA frameshift 2 0 high [INTERCHROMOSOMAL[chr20--chr17]],translocation/5'-5' ZMYND8 NA AC009720.1 NA Oncogene NA NA NA NA +19:12163206 19:23505981 ZNF136--AC011493.1 BS_S6Q7NKA3 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr19:11.30Mb]],inversion ZNF136 NA AC011493.1 NA TranscriptionFactor NA NA NA NA +19:12163206 19:23534317 ZNF136--ZNF675 BS_S6Q7NKA3 ARRIBA frameshift 3 1 high [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:11.34Mb]],inversion ZNF136 NA ZNF675 NA TranscriptionFactor TranscriptionFactor NA NA NA +19:12163206 19:23574232 ZNF136--ZNF675 BS_S6Q7NKA3 ARRIBA frameshift 2 0 high [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:11.34Mb]],inversion ZNF136 NA ZNF675 NA TranscriptionFactor TranscriptionFactor NA NA NA +19:12163206 19:23528014 ZNF136--ZNF675 BS_S6Q7NKA3 ARRIBA frameshift 2 0 medium [HGNC_GENEFAM,INTRACHROMOSOMAL[chr19:11.34Mb]],inversion ZNF136 NA ZNF675 NA TranscriptionFactor TranscriptionFactor NA NA NA +11:35918011 11:36227085 AC090692.1--LDLRAD3 BS_SNVM7CZT ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr11:0.03Mb],LOCAL_INVERSION:-:+:[25242]],inversion AC090692.1 NA LDLRAD3 NA NA NA NA NA NA +2:60545971 2:29223528 BCL11A--ALK BS_SNVM7CZT STARFUSION in-frame 54 23 NA [INTRACHROMOSOMAL[chr2:30.53Mb]] BCL11A NA ALK NA CosmicCensus, Oncogene, TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +2:60545971 2:29223528 BCL11A--ALK BS_SNVM7CZT ARRIBA in-frame 42 20 high [INTRACHROMOSOMAL[chr2:30.53Mb]],deletion BCL11A NA ALK NA CosmicCensus, Oncogene, TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA +4:150221785 16:64991935 DCLK2--CDH11 BS_SNVM7CZT ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation DCLK2 NA CDH11 NA Kinase, Kinase TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +X:150363530 X:150128705 MAMLD1--LINC00894 BS_SNVM7CZT ARRIBA other 3 0 high [INTRACHROMOSOMAL[chrX:0.14Mb]],duplication MAMLD1 NA LINC00894 NA NA NA NA NA NA +X:150363530 X:150327238 MAMLD1--XRCC6P2(94342)/MAMLD1(34184) BS_SNVM7CZT ARRIBA other 1 1 high [],duplication MAMLD1 NA XRCC6P2 MAMLD1 NA NA NA NA NA +12:109245388 17:31258094 ACACB--NF1 BS_T3DGY9J9 ARRIBA other 1 3 medium [INTERCHROMOSOMAL[chr12--chr17]],translocation ACACB NA NF1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +10:74398579 10:76557209 ADK--LRMDA BS_T3DGY9J9 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr10:0.72Mb]],deletion ADK NA LRMDA NA NA NA NA NA NA +17:82255429 12:69269512 CSNK1D--CPSF6 BS_T3DGY9J9 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr17--chr12]],translocation CSNK1D NA CPSF6 NA Kinase NA NA NA NA +2:202828848 19:14792431 ICA1L--OR7C1 BS_T3DGY9J9 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr2--chr19]],translocation/5'-5' ICA1L NA OR7C1 NA NA NA NA NA NA +17:31253000 12:109245626 NF1--ACACB BS_T3DGY9J9 ARRIBA in-frame 9 3 high [INTERCHROMOSOMAL[chr17--chr12]],translocation NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +17:31249119 12:109245626 NF1--ACACB BS_T3DGY9J9 ARRIBA in-frame 4 2 high [INTERCHROMOSOMAL[chr17--chr12]],translocation NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +1:29181646 8:91189522 SRSF4--LRRC69 BS_T3DGY9J9 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr1--chr8]],translocation SRSF4 NA LRRC69 NA NA NA NA NA NA +19:12551330 19:14102914 AC008758.1--PRKACA BS_W1385R8Y ARRIBA in-frame 7 0 high [INTRACHROMOSOMAL[chr19:1.54Mb]],duplication AC008758.1 NA PRKACA NA NA CosmicCensus, Kinase NA NA NA +10:87880438 10:89222582 AC063965.1--LIPA BS_W1385R8Y ARRIBA other 6 0 high [INTRACHROMOSOMAL[chr10:1.33Mb]],inversion AC063965.1 NA LIPA NA NA NA NA NA NA +16:30716479 16:2770352 AC106886.5--SRRM2 BS_W1385R8Y ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr16:27.93Mb]],duplication AC106886.5 NA SRRM2 NA NA NA NA NA NA +21:26215829 21:26387724 AP000229.1--AP001596.1 BS_W1385R8Y STARFUSION other 20 19 NA [INTRACHROMOSOMAL[chr21:0.16Mb]] AP000229.1 NA AP001596.1 NA NA NA NA NA NA +21:26215829 21:26470751 AP000229.1--AP001596.1 BS_W1385R8Y STARFUSION other 9 19 NA [INTRACHROMOSOMAL[chr21:0.16Mb]] AP000229.1 NA AP001596.1 NA NA NA NA NA NA +21:26215829 21:26503582 AP000229.1--CYYR1-AS1 BS_W1385R8Y STARFUSION other 4 8 NA [INTRACHROMOSOMAL[chr21:0.18Mb]] AP000229.1 NA CYYR1-AS1 NA NA NA NA NA NA +21:26215829 21:26387724 AP000229.1--CYYR1-AS1 BS_W1385R8Y STARFUSION other 3 8 NA [INTRACHROMOSOMAL[chr21:0.18Mb]] AP000229.1 NA CYYR1-AS1 NA NA NA NA NA NA +15:80404546 2:110097889 ARNT2--MALL BS_W1385R8Y ARRIBA frameshift 8 1 high [INTERCHROMOSOMAL[chr15--chr2]],translocation/5'-5' ARNT2 NA MALL NA TranscriptionFactor NA NA NA NA +8:61680970 6:5545178 ASPH--FARS2 BS_W1385R8Y ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr8--chr6]],translocation ASPH NA FARS2 NA NA NA NA NA NA +4:80928441 4:99594435 C4orf22--MTTP BS_W1385R8Y ARRIBA other 11 1 medium [INTRACHROMOSOMAL[chr4:18.60Mb]],deletion C4orf22 NA MTTP NA NA NA NA NA NA +12:121270898 22:31938115 CAMKK2--C22orf24 BS_W1385R8Y ARRIBA frameshift 1 1 low [INTERCHROMOSOMAL[chr12--chr22]],translocation CAMKK2 NA C22orf24 NA Kinase, Oncogene, Kinase NA NA NA NA +12:121270898 22:31954747 CAMKK2--YWHAH BS_W1385R8Y ARRIBA frameshift 39 34 high [INTERCHROMOSOMAL[chr12--chr22]],translocation/5'-5' CAMKK2 NA YWHAH NA Kinase, Oncogene, Kinase NA NA NA NA +1:19485436 9:72688709 CAPZB--TMC1 BS_W1385R8Y ARRIBA other 2 0 low [INTERCHROMOSOMAL[chr1--chr9]],translocation CAPZB NA TMC1 NA NA NA NA NA NA +1:19484190 9:72688709 CAPZB--TMC1 BS_W1385R8Y ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr1--chr9]],translocation CAPZB NA TMC1 NA NA NA NA NA NA +1:19485436 9:72694543 CAPZB--TMC1 BS_W1385R8Y ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr1--chr9]],translocation CAPZB NA TMC1 NA NA NA NA NA NA +1:14180592 1:5902225 KAZN--NPHP4 BS_W1385R8Y ARRIBA frameshift 9 0 high [INTRACHROMOSOMAL[chr1:7.90Mb]],duplication/5'-5' KAZN NA NPHP4 NA NA NA NA NA NA +21:43358059 21:42390037 LINC00322(26020)/LINC01679(88)--TMPRSS3 BS_W1385R8Y ARRIBA other 2 3 high [],inversion LINC00322 LINC01679 TMPRSS3 NA NA Oncogene NA NA NA +10:89215938 1:192811402 LIPA--RGS2 BS_W1385R8Y STARFUSION in-frame 53 46 NA [INTERCHROMOSOMAL[chr10--chr1]] LIPA NA RGS2 NA NA Oncogene NA NA NA +10:89215938 1:192811402 LIPA--RGS2 BS_W1385R8Y ARRIBA in-frame 43 41 high [INTERCHROMOSOMAL[chr10--chr1]],translocation LIPA NA RGS2 NA NA Oncogene NA NA NA +7:1980453 9:93629970 MAD1L1--PHF2 BS_W1385R8Y STARFUSION in-frame 22 5 NA [INTERCHROMOSOMAL[chr7--chr9]] MAD1L1 NA PHF2 NA TumorSuppressorGene, Oncogene NA NA NA NA +7:1980453 9:93629970 MAD1L1--PHF2 BS_W1385R8Y ARRIBA in-frame 21 5 high [INTERCHROMOSOMAL[chr7--chr9]],translocation MAD1L1 NA PHF2 NA TumorSuppressorGene, Oncogene NA NA NA NA +16:21625115 16:47619390 METTL9--PHKB BS_W1385R8Y ARRIBA frameshift 61 23 high [INTRACHROMOSOMAL[chr16:25.80Mb]],inversion/3'-3' METTL9 NA PHKB NA NA NA NA NA NA +2:111344061 2:87125198 MIR4435-2HG--AC083899.1 BS_W1385R8Y ARRIBA other 2 0 medium [INTRACHROMOSOMAL[chr2:24.00Mb]],inversion MIR4435-2HG NA AC083899.1 NA NA NA NA NA NA +4:99591790 X:89057572 MTTP--AL731768.1(75219)/SRIP2(309863) BS_W1385R8Y ARRIBA frameshift 8 2 high [],translocation MTTP NA AL731768.1 SRIP2 NA NA NA NA NA +21:42733426 21:43284951 PDE9A--CRYAA(112146)/LINC00322(37466) BS_W1385R8Y ARRIBA frameshift 14 1 high [],deletion PDE9A NA CRYAA LINC00322 NA Oncogene NA NA NA +22:27910964 15:34342108 PITPNB--NOP10 BS_W1385R8Y ARRIBA frameshift 34 15 high [INTERCHROMOSOMAL[chr22--chr15]],translocation PITPNB NA NOP10 NA NA NA NA NA NA +10:87864624 10:89222582 PTEN--LIPA BS_W1385R8Y STARFUSION other 11 9 NA [INTRACHROMOSOMAL[chr10:1.24Mb]] PTEN NA LIPA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +10:87888590 10:89222582 PTEN--LIPA BS_W1385R8Y STARFUSION other 11 9 NA [INTRACHROMOSOMAL[chr10:1.24Mb]] PTEN NA LIPA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +10:87888590 10:89222582 PTEN--LIPA BS_W1385R8Y ARRIBA other 68 34 high [INTRACHROMOSOMAL[chr10:1.24Mb]],inversion PTEN NA LIPA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +1:192811147 10:87894018 RGS2--PTEN BS_W1385R8Y STARFUSION other 12 7 NA [INTERCHROMOSOMAL[chr1--chr10]] RGS2 NA PTEN NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +1:192811147 10:87894018 RGS2--PTEN BS_W1385R8Y ARRIBA in-frame 12 7 high [INTERCHROMOSOMAL[chr1--chr10]],translocation RGS2 NA PTEN NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +1:192811147 10:87894025 RGS2--PTEN BS_W1385R8Y ARRIBA frameshift 1 7 high [INTERCHROMOSOMAL[chr1--chr10]],translocation RGS2 NA PTEN NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +1:192811147 10:87925513 RGS2--PTEN BS_W1385R8Y ARRIBA frameshift 1 4 high [INTERCHROMOSOMAL[chr1--chr10]],translocation RGS2 NA PTEN NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +4:173403950 4:140360974 SCRG1--SCOC-AS1 BS_W1385R8Y ARRIBA other 3 0 high [INTRACHROMOSOMAL[chr4:33.01Mb]],inversion/3'-3' SCRG1 NA SCOC-AS1 NA NA NA NA NA NA +16:30716479 16:2770352 SRCAP--SRRM2 BS_W1385R8Y ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr16:27.93Mb]],duplication SRCAP NA SRRM2 NA TranscriptionFactor NA NA NA NA +X:123961856 4:99595594 STAG2--AC083902.1 BS_W1385R8Y STARFUSION other 26 14 NA [INTERCHROMOSOMAL[chrX--chr4]] STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA +X:123960866 4:99595594 STAG2--AC083902.1 BS_W1385R8Y STARFUSION other 17 14 NA [INTERCHROMOSOMAL[chrX--chr4]] STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA +X:123961856 4:99595641 STAG2--AC083902.1 BS_W1385R8Y STARFUSION other 14 14 NA [INTERCHROMOSOMAL[chrX--chr4]] STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA +X:123962106 4:99595641 STAG2--AC083902.1 BS_W1385R8Y STARFUSION other 10 14 NA [INTERCHROMOSOMAL[chrX--chr4]] STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA +X:123960866 4:99595641 STAG2--AC083902.1 BS_W1385R8Y STARFUSION other 8 14 NA [INTERCHROMOSOMAL[chrX--chr4]] STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA +X:123961856 4:99594881 STAG2--AC083902.1 BS_W1385R8Y STARFUSION other 6 14 NA [INTERCHROMOSOMAL[chrX--chr4]] STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA +X:123961856 4:99595594 STAG2--AC083902.1 BS_W1385R8Y ARRIBA other 26 9 high [INTERCHROMOSOMAL[chrX--chr4]],translocation STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA +X:123961856 4:99595641 STAG2--AC083902.1 BS_W1385R8Y ARRIBA other 14 12 high [INTERCHROMOSOMAL[chrX--chr4]],translocation STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA +X:123962106 4:99595641 STAG2--AC083902.1 BS_W1385R8Y ARRIBA other 10 12 high [INTERCHROMOSOMAL[chrX--chr4]],translocation STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA +X:123960866 4:99595641 STAG2--AC083902.1 BS_W1385R8Y ARRIBA other 7 7 high [INTERCHROMOSOMAL[chrX--chr4]],translocation STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA +X:123960866 4:99594881 STAG2--AC083902.1 BS_W1385R8Y ARRIBA other 3 0 high [INTERCHROMOSOMAL[chrX--chr4]],translocation STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA +X:123961856 4:99594881 STAG2--AC083902.1 BS_W1385R8Y ARRIBA other 3 0 high [INTERCHROMOSOMAL[chrX--chr4]],translocation STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA +X:123961856 4:80807101 STAG2--C4orf22 BS_W1385R8Y ARRIBA other 16 7 high [INTERCHROMOSOMAL[chrX--chr4]],translocation/5'-5' STAG2 NA C4orf22 NA CosmicCensus, Oncogene NA NA NA NA +X:123961856 4:99594881 STAG2--MTTP BS_W1385R8Y ARRIBA other 6 3 high [INTERCHROMOSOMAL[chrX--chr4]],translocation/5'-5' STAG2 NA MTTP NA CosmicCensus, Oncogene NA NA NA NA +21:42395104 21:44040621 TMPRSS3--TRAPPC10 BS_W1385R8Y ARRIBA other 6 2 medium [INTRACHROMOSOMAL[chr21:1.62Mb]],duplication/5'-5' TMPRSS3 NA TRAPPC10 NA Oncogene NA NA NA NA +21:44037927 21:43357834 TRAPPC10--LINC00322(25795)/LINC01679(313) BS_W1385R8Y ARRIBA frameshift 106 36 high [],duplication TRAPPC10 NA LINC00322 LINC01679 NA NA NA NA NA +21:44037927 21:43357834 TRAPPC10--LINC01679 BS_W1385R8Y ARRIBA frameshift 2 1 medium [INTRACHROMOSOMAL[chr21:0.65Mb]],duplication/5'-5' TRAPPC10 NA LINC01679 NA NA NA NA NA NA +16:89923458 2:806249 TUBB3--LINC01115 BS_W1385R8Y ARRIBA frameshift 4 0 medium [INTERCHROMOSOMAL[chr16--chr2]],translocation TUBB3 NA LINC01115 NA NA NA NA NA NA +17:6755649 8:85202145 XAF1--E2F5 BS_W1385R8Y ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr17--chr8]],translocation XAF1 NA E2F5 NA TumorSuppressorGene, Oncogene TranscriptionFactor NA NA NA +19:12551330 19:14102914 ZNF564--PRKACA BS_W1385R8Y ARRIBA in-frame 7 0 high [INTRACHROMOSOMAL[chr19:1.54Mb]],duplication ZNF564 NA PRKACA NA TranscriptionFactor CosmicCensus, Kinase NA NA NA +5:1632644 21:18024750 AC026412.1--AF130417.1 BS_W4H1D4Y6 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr5--chr21]],translocation AC026412.1 NA AF130417.1 NA NA NA NA NA NA +5:1632845 21:17997566 AC026412.1--CHODL BS_W4H1D4Y6 ARRIBA other 2 1 high [INTERCHROMOSOMAL[chr5--chr21]],translocation/5'-5' AC026412.1 NA CHODL NA NA NA NA NA NA +12:22700094 19:35908307 AC084816.1--TYROBP BS_W4H1D4Y6 ARRIBA other 46 33 high [INTERCHROMOSOMAL[chr12--chr19]],translocation AC084816.1 NA TYROBP NA NA NA NA NA NA +12:22700094 19:35921053 AC084816.1--TYROBP(12758)/LRFN3(14305) BS_W4H1D4Y6 ARRIBA other 29 0 medium [],translocation AC084816.1 NA TYROBP LRFN3 NA NA NA NA NA +7:152367261 7:55773178 AC104692.1--PSPHP1 BS_W4H1D4Y6 STARFUSION other 71 0 NA [INTRACHROMOSOMAL[chr7:96.59Mb]] AC104692.1 NA PSPHP1 NA NA NA NA NA NA +5:70221931 5:21731601 AC138866.1--AC091946.1 BS_W4H1D4Y6 ARRIBA other 29 0 medium [INTRACHROMOSOMAL[chr5:48.44Mb]],deletion/5'-5' AC138866.1 NA AC091946.1 NA NA NA NA NA NA +1:145214677 1:148879699 AC241585.2--PDE4DIP BS_W4H1D4Y6 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr1:3.59Mb]],duplication/5'-5' AC241585.2 NA PDE4DIP NA NA CosmicCensus, Oncogene NA NA NA +1:35869904 1:31188186 AGO1--NKAIN1 BS_W4H1D4Y6 ARRIBA other 4 0 high [INTRACHROMOSOMAL[chr1:4.63Mb]],inversion AGO1 NA NKAIN1 NA NA NA NA NA NA +5:428006 21:22902486 AHRR--AP000949.1(18486)/AP001116.1(163005) BS_W4H1D4Y6 ARRIBA frameshift 2 0 medium [],translocation AHRR NA AP000949.1 AP001116.1 TumorSuppressorGene, TranscriptionFactor NA NA NA NA +1:33036736 1:28622165 AK2--TAF12 BS_W4H1D4Y6 ARRIBA in-frame 3 0 medium [INTRACHROMOSOMAL[chr1:4.36Mb]],deletion AK2 NA TAF12 NA NA NA NA NA NA +14:32535805 14:32433460 AKAP6--AKAP6 BS_W4H1D4Y6 ARRIBA frameshift 8 1 low [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr14:0.51Mb]],duplication/non-canonical_splicing AKAP6 NA AKAP6 NA NA NA NA NA NA +1:55615002 1:39231182 AL603840.1--MACF1 BS_W4H1D4Y6 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr1:16.09Mb]],duplication AL603840.1 NA MACF1 NA NA Oncogene NA NA NA +5:14871352 5:2206461 ANKH--Y_RNA(21641)/AC092266.1(55398) BS_W4H1D4Y6 ARRIBA frameshift 12 1 medium [],deletion ANKH NA Y_RNA AC092266.1 NA NA NA NA NA +5:14871352 5:2229640 ANKH--Y_RNA(44820)/AC092266.1(32219) BS_W4H1D4Y6 ARRIBA frameshift 1 0 low [],deletion ANKH NA Y_RNA AC092266.1 NA NA NA NA NA +19:32675071 19:34850692 ANKRD27--AC008555.2 BS_W4H1D4Y6 STARFUSION other 10 0 NA [INTRACHROMOSOMAL[chr19:2.16Mb]] ANKRD27 NA AC008555.2 NA NA NA NA NA NA +19:32675071 19:34850692 ANKRD27--AC008555.2 BS_W4H1D4Y6 ARRIBA other 10 0 high [INTRACHROMOSOMAL[chr19:2.16Mb]],inversion ANKRD27 NA AC008555.2 NA NA NA NA NA NA +19:32675071 19:34904094 ANKRD27--AC008555.3 BS_W4H1D4Y6 ARRIBA other 9 0 high [INTRACHROMOSOMAL[chr19:2.23Mb]],inversion/5'-5' ANKRD27 NA AC008555.3 NA NA NA NA NA NA +11:133297188 11:133725367 AP003972.1--OPCML(192848)/AP001979.2(58304) BS_W4H1D4Y6 ARRIBA other 1 1 medium [],deletion AP003972.1 NA OPCML AP001979.2 NA TumorSuppressorGene, Oncogene NA NA NA +21:25954590 21:26566368 APP--CYYR1 BS_W4H1D4Y6 ARRIBA in-frame 1 0 low [Klijn_CellLines,INTRACHROMOSOMAL[chr21:0.30Mb]],duplication APP NA CYYR1 NA NA NA NA NA NA +5:96702915 5:95783797 CAST--RHOBTB3 BS_W4H1D4Y6 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr5:0.70Mb]],duplication CAST NA RHOBTB3 NA NA NA NA NA NA +5:96675601 5:95736889 CAST--RHOBTB3 BS_W4H1D4Y6 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr5:0.70Mb]],duplication CAST NA RHOBTB3 NA NA NA NA NA NA +5:216729 5:11106940 CCDC127--CTNND2 BS_W4H1D4Y6 ARRIBA frameshift 1 2 high [INTRACHROMOSOMAL[chr5:10.75Mb]],inversion/5'-5' CCDC127 NA CTNND2 NA NA CosmicCensus, Oncogene NA NA NA +5:216729 19:5182822 CCDC127--PTPRS BS_W4H1D4Y6 ARRIBA frameshift 4 4 high [INTERCHROMOSOMAL[chr5--chr19]],translocation/5'-5' CCDC127 NA PTPRS NA NA NA NA NA NA +5:65521475 5:64413744 CENPK--AC091862.1 BS_W4H1D4Y6 ARRIBA frameshift 5 3 high [INTRACHROMOSOMAL[chr5:1.03Mb]],deletion CENPK NA AC091862.1 NA NA NA NA NA NA +6:118664411 6:117794392 CEP85L--NUS1(83752)/SLC35F1(113134) BS_W4H1D4Y6 ARRIBA other 4 1 high [],inversion CEP85L NA NUS1 SLC35F1 NA NA NA NA NA +6:118710036 6:118154445 CEP85L--SLC35F1 BS_W4H1D4Y6 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr6:0.14Mb]],inversion CEP85L NA SLC35F1 NA NA NA NA NA NA +19:4442341 5:633769 CHAF1A--CEP72 BS_W4H1D4Y6 ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr19--chr5]],translocation CHAF1A NA CEP72 NA NA NA NA NA NA +10:124092324 10:124412200 CHST15--OAT BS_W4H1D4Y6 ARRIBA other 1 1 low [INTRACHROMOSOMAL[chr10:0.30Mb]],duplication CHST15 NA OAT NA NA NA NA NA NA +19:33622296 12:24460776 CHST8--AC069208.1 BS_W4H1D4Y6 ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr19--chr12]],translocation CHST8 NA AC069208.1 NA NA NA NA NA NA +19:33622296 12:23559623 CHST8--SOX5 BS_W4H1D4Y6 ARRIBA other 9 9 high [INTERCHROMOSOMAL[chr19--chr12]],translocation/5'-5' CHST8 NA SOX5 NA NA Oncogene, TranscriptionFactor NA NA NA +5:11236691 5:453370 CTNND2--EXOC3 BS_W4H1D4Y6 STARFUSION frameshift 5 4 NA [INTRACHROMOSOMAL[chr5:10.50Mb]] CTNND2 NA EXOC3 NA CosmicCensus, Oncogene NA NA NA NA +5:11236691 5:453370 CTNND2--EXOC3 BS_W4H1D4Y6 ARRIBA frameshift 5 4 high [INTRACHROMOSOMAL[chr5:10.50Mb]],inversion CTNND2 NA EXOC3 NA CosmicCensus, Oncogene NA NA NA NA +5:11236722 5:448621 CTNND2--EXOC3 BS_W4H1D4Y6 ARRIBA frameshift 10 5 medium [INTRACHROMOSOMAL[chr5:10.50Mb]],inversion CTNND2 NA EXOC3 NA CosmicCensus, Oncogene NA NA NA NA +5:11236691 5:17926824 CTNND2--LINC02223 BS_W4H1D4Y6 ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr5:5.78Mb]],inversion CTNND2 NA LINC02223 NA CosmicCensus, Oncogene NA NA NA NA +5:11110898 19:5188468 CTNND2--PTPRS BS_W4H1D4Y6 ARRIBA frameshift 8 2 medium [INTERCHROMOSOMAL[chr5--chr19]],translocation CTNND2 NA PTPRS NA CosmicCensus, Oncogene NA NA NA NA +5:139648845 12:49755635 CXXC5--TMBIM6 BS_W4H1D4Y6 ARRIBA other 4 1 medium [INTERCHROMOSOMAL[chr5--chr12]],translocation CXXC5 NA TMBIM6 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA +5:139649009 12:49755635 CXXC5--TMBIM6 BS_W4H1D4Y6 ARRIBA other 3 1 medium [INTERCHROMOSOMAL[chr5--chr12]],translocation CXXC5 NA TMBIM6 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA +21:26480272 21:26053348 CYYR1--APP BS_W4H1D4Y6 ARRIBA in-frame 1 0 low [GTEx,INTRACHROMOSOMAL[chr21:0.30Mb]],deletion CYYR1 NA APP NA NA NA NA NA NA +21:26572868 21:26090072 CYYR1--APP BS_W4H1D4Y6 ARRIBA frameshift 1 0 low [GTEx,INTRACHROMOSOMAL[chr21:0.30Mb]],deletion CYYR1 NA APP NA NA NA NA NA NA +5:10748175 21:16973524 DAP--AF212831.1(99833)/NEK4P1(236945) BS_W4H1D4Y6 ARRIBA frameshift 3 0 medium [],translocation DAP NA AF212831.1 NEK4P1 NA NA NA NA NA +6:30889430 6:30624883 DDR1--MRPS18B BS_W4H1D4Y6 ARRIBA frameshift 1 1 low [INTRACHROMOSOMAL[chr6:0.25Mb]],duplication DDR1 NA MRPS18B NA Kinase, Oncogene, Kinase NA NA NA NA +11:65333918 20:56167297 DPF2--CBLN4(161825)/RNA5SP487(37755) BS_W4H1D4Y6 ARRIBA frameshift 11 1 high [],translocation DPF2 NA CBLN4 RNA5SP487 NA NA NA NA NA +2:11447627 2:10802640 E2F6--PDIA6 BS_W4H1D4Y6 ARRIBA in-frame 1 1 low [Klijn_CellLines,INTRACHROMOSOMAL[chr2:0.61Mb]],deletion E2F6 NA PDIA6 NA Oncogene, TranscriptionFactor NA NA NA NA +1:22896478 1:33976054 EPHB2--CSMD2 BS_W4H1D4Y6 ARRIBA frameshift 3 2 high [INTRACHROMOSOMAL[chr1:10.59Mb]],deletion/5'-5' EPHB2 NA CSMD2 NA Kinase, TumorSuppressorGene, Kinase NA NA NA NA +5:442447 21:22884078 EXOC3-AS1--AP000949.1(78)/AP001116.1(181413) BS_W4H1D4Y6 ARRIBA other 2 2 medium [],translocation EXOC3-AS1 NA AP000949.1 AP001116.1 NA NA NA NA NA +3:115791158 3:116354210 GAP43(69668)/LSAMP(11205)--LSAMP-AS1 BS_W4H1D4Y6 ARRIBA other 2 1 medium [],deletion GAP43 LSAMP LSAMP-AS1 NA NA NA TumorSuppressorGene NA NA +1:28710642 1:33031056 GMEB1--AL020995.1 BS_W4H1D4Y6 STARFUSION other 44 19 NA [INTRACHROMOSOMAL[chr1:4.27Mb]] GMEB1 NA AL020995.1 NA TranscriptionFactor NA NA NA NA +1:28710642 1:33031056 GMEB1--AL020995.1 BS_W4H1D4Y6 ARRIBA frameshift 44 19 high [INTRACHROMOSOMAL[chr1:4.27Mb]],deletion GMEB1 NA AL020995.1 NA TranscriptionFactor NA NA NA NA +11:33257889 11:33141986 HIPK3--CSTF3 BS_W4H1D4Y6 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr11:0.09Mb],LOCAL_INVERSION:+:-:[94301]],inversion HIPK3 NA CSTF3 NA Kinase, Kinase NA NA NA NA +15:77464387 15:86939766 HMG20A--AC016987.1 BS_W4H1D4Y6 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:9.45Mb]],inversion HMG20A NA AC016987.1 NA TranscriptionFactor NA NA NA NA +15:77464387 15:86999166 HMG20A--AGBL1 BS_W4H1D4Y6 ARRIBA frameshift 4 0 high [INTRACHROMOSOMAL[chr15:8.59Mb]],inversion/3'-3' HMG20A NA AGBL1 NA TranscriptionFactor NA NA NA NA +15:77464387 15:79260846 HMG20A--ANKRD34C-AS1 BS_W4H1D4Y6 STARFUSION other 6 6 NA [INTRACHROMOSOMAL[chr15:1.71Mb]] HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA +15:77464387 15:79192102 HMG20A--ANKRD34C-AS1 BS_W4H1D4Y6 STARFUSION other 5 6 NA [INTRACHROMOSOMAL[chr15:1.71Mb]] HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA +15:77464387 15:79213359 HMG20A--ANKRD34C-AS1 BS_W4H1D4Y6 STARFUSION other 3 6 NA [INTRACHROMOSOMAL[chr15:1.71Mb]] HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA +15:77464387 15:79260846 HMG20A--ANKRD34C-AS1 BS_W4H1D4Y6 ARRIBA frameshift 5 6 high [INTRACHROMOSOMAL[chr15:1.71Mb]],inversion HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA +15:77464387 15:79213359 HMG20A--ANKRD34C-AS1 BS_W4H1D4Y6 ARRIBA frameshift 3 3 high [INTRACHROMOSOMAL[chr15:1.71Mb]],inversion HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA +15:77464387 15:79236928 HMG20A--ANKRD34C-AS1 BS_W4H1D4Y6 ARRIBA frameshift 1 5 high [INTRACHROMOSOMAL[chr15:1.71Mb]],inversion HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA +15:77464387 15:79192102 HMG20A--ANKRD34C-AS1 BS_W4H1D4Y6 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr15:1.71Mb]],inversion HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA +21:33324573 5:11236823 IFNAR1--CTNND2 BS_W4H1D4Y6 ARRIBA other 6 3 high [INTERCHROMOSOMAL[chr21--chr5]],translocation/3'-3' IFNAR1 NA CTNND2 NA Oncogene CosmicCensus, Oncogene NA NA NA +5:20660768 5:7690691 LINC02241--ADCY2 BS_W4H1D4Y6 ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr5:12.78Mb]],duplication LINC02241 NA ADCY2 NA NA NA NA NA NA +5:20660768 21:18561691 LINC02241--MIR548XHG BS_W4H1D4Y6 STARFUSION other 9 2 NA [INTERCHROMOSOMAL[chr5--chr21]] LINC02241 NA MIR548XHG NA NA NA NA NA NA +5:20660768 21:18570411 LINC02241--MIR548XHG BS_W4H1D4Y6 ARRIBA other 9 3 high [INTERCHROMOSOMAL[chr5--chr21]],translocation LINC02241 NA MIR548XHG NA NA NA NA NA NA +5:20660768 21:18561691 LINC02241--MIR548XHG BS_W4H1D4Y6 ARRIBA other 9 2 high [INTERCHROMOSOMAL[chr5--chr21]],translocation LINC02241 NA MIR548XHG NA NA NA NA NA NA +10:66928452 10:65988797 LRRTM3--CTNNA3 BS_W4H1D4Y6 ARRIBA frameshift 9 14 medium [ChimerPub,INTRACHROMOSOMAL[chr10:0.17Mb]],inversion LRRTM3 NA CTNNA3 NA NA TumorSuppressorGene NA NA NA +10:66926587 10:65988797 LRRTM3--CTNNA3 BS_W4H1D4Y6 ARRIBA frameshift 11 12 medium [ChimerPub,INTRACHROMOSOMAL[chr10:0.17Mb]],inversion LRRTM3 NA CTNNA3 NA NA TumorSuppressorGene NA NA NA +1:39439500 1:44655209 MACF1--TMEM53 BS_W4H1D4Y6 STARFUSION in-frame 93 89 NA [INTRACHROMOSOMAL[chr1:5.15Mb]] MACF1 NA TMEM53 NA Oncogene NA NA NA NA +1:39439500 1:44655209 MACF1--TMEM53 BS_W4H1D4Y6 ARRIBA in-frame 88 87 high [INTRACHROMOSOMAL[chr1:5.15Mb]],inversion MACF1 NA TMEM53 NA Oncogene NA NA NA NA +1:39439500 1:44655119 MACF1--TMEM53 BS_W4H1D4Y6 ARRIBA in-frame 54 56 high [INTRACHROMOSOMAL[chr1:5.15Mb]],inversion MACF1 NA TMEM53 NA Oncogene NA NA NA NA +1:39439500 1:44645464 MACF1--TMEM53 BS_W4H1D4Y6 ARRIBA frameshift 5 1 medium [INTRACHROMOSOMAL[chr1:5.15Mb]],inversion MACF1 NA TMEM53 NA Oncogene NA NA NA NA +1:39438008 1:44655209 MACF1--TMEM53 BS_W4H1D4Y6 ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr1:5.15Mb]],inversion MACF1 NA TMEM53 NA Oncogene NA NA NA NA +22:38202212 22:37956773 MAFF--POLR2F BS_W4H1D4Y6 ARRIBA other 5 0 medium [INTRACHROMOSOMAL[chr22:0.16Mb]],duplication MAFF NA POLR2F NA TranscriptionFactor NA NA NA NA +21:18737924 5:20572254 MIR548XHG--CDH18 BS_W4H1D4Y6 ARRIBA other 11 3 high [INTERCHROMOSOMAL[chr21--chr5]],translocation/5'-5' MIR548XHG NA CDH18 NA NA NA NA NA NA +21:18737924 5:20572254 MIR548XHG--LINC02241 BS_W4H1D4Y6 ARRIBA other 2 1 high [INTERCHROMOSOMAL[chr21--chr5]],translocation MIR548XHG NA LINC02241 NA NA NA NA NA NA +9:21854870 9:17956278 MTAP--ADAMTSL1 BS_W4H1D4Y6 ARRIBA frameshift 14 4 high [INTRACHROMOSOMAL[chr9:2.89Mb]],inversion/3'-3' MTAP NA ADAMTSL1 NA TumorSuppressorGene NA NA NA NA +5:7851585 21:29694063 MTRR--GRIK1 BS_W4H1D4Y6 ARRIBA other 1 2 high [INTERCHROMOSOMAL[chr5--chr21]],translocation MTRR NA GRIK1 NA NA NA NA NA NA +5:16935788 21:18738025 MYO10--MIR548XHG BS_W4H1D4Y6 STARFUSION other 15 4 NA [INTERCHROMOSOMAL[chr5--chr21]] MYO10 NA MIR548XHG NA NA NA NA NA NA +5:16935788 21:18738025 MYO10--MIR548XHG BS_W4H1D4Y6 ARRIBA frameshift 15 4 high [INTERCHROMOSOMAL[chr5--chr21]],translocation MYO10 NA MIR548XHG NA NA NA NA NA NA +5:16935788 21:18760196 MYO10--MIR548XHG(193)/PPIAP22(97583) BS_W4H1D4Y6 ARRIBA frameshift 6 2 high [],translocation MYO10 NA MIR548XHG PPIAP22 NA NA NA NA NA +19:35895980 19:38700600 NFKBID--ACTN4 BS_W4H1D4Y6 STARFUSION in-frame 7 4 NA [INTRACHROMOSOMAL[chr19:2.75Mb]] NFKBID NA ACTN4 NA NA NA NA NA NA +19:35895980 19:38700600 NFKBID--ACTN4 BS_W4H1D4Y6 ARRIBA in-frame 7 4 medium [INTRACHROMOSOMAL[chr19:2.75Mb]],inversion NFKBID NA ACTN4 NA NA NA NA NA NA +19:35895980 19:29953904 NFKBID--URI1 BS_W4H1D4Y6 ARRIBA frameshift 31 16 high [INTRACHROMOSOMAL[chr19:5.87Mb]],deletion/5'-5' NFKBID NA URI1 NA NA NA NA NA NA +5:272772 5:6792728 PDCD6--AC122710.3(12730)/LINC02236(3152) BS_W4H1D4Y6 ARRIBA frameshift 10 0 high [],inversion PDCD6 NA AC122710.3 LINC02236 Oncogene NA NA NA NA +5:272772 5:492071 PDCD6--SLC9A3 BS_W4H1D4Y6 STARFUSION in-frame 6 8 NA [INTRACHROMOSOMAL[chr5:0.12Mb]] PDCD6 NA SLC9A3 NA Oncogene NA NA NA NA +5:272772 5:492071 PDCD6--SLC9A3 BS_W4H1D4Y6 ARRIBA in-frame 6 6 high [INTRACHROMOSOMAL[chr5:0.12Mb]],inversion PDCD6 NA SLC9A3 NA Oncogene NA NA NA NA +15:77365163 15:79475183 PEAK1--KIAA1024(2893)/AC023968.2(84073) BS_W4H1D4Y6 ARRIBA other 3 1 high [],duplication PEAK1 NA KIAA1024 AC023968.2 Kinase NA NA NA NA +7:100328836 11:43572806 PMS2P1--AC068205.1 BS_W4H1D4Y6 ARRIBA other 4 0 medium [INTERCHROMOSOMAL[chr7--chr11]],translocation PMS2P1 NA AC068205.1 NA NA NA NA NA NA +7:100325691 20:62111390 PMS2P1--AL137077.2(42953)/LSM14B(11071) BS_W4H1D4Y6 ARRIBA other 1 1 medium [],translocation PMS2P1 NA AL137077.2 LSM14B NA NA NA NA NA +15:90984018 15:76665789 PRC1--SCAPER BS_W4H1D4Y6 ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr15:14.06Mb]],deletion PRC1 NA SCAPER NA NA NA NA NA NA +19:5273442 21:33030685 PTPRS--AP000282.1 BS_W4H1D4Y6 ARRIBA frameshift 349 107 high [INTERCHROMOSOMAL[chr19--chr21]],translocation PTPRS NA AP000282.1 NA NA NA NA NA NA +19:5273442 5:1060177 PTPRS--SLC12A7 BS_W4H1D4Y6 ARRIBA frameshift 7 0 medium [INTERCHROMOSOMAL[chr19--chr5]],translocation/5'-5' PTPRS NA SLC12A7 NA NA NA NA NA NA +19:5273442 5:1409849 PTPRS--SLC6A3 BS_W4H1D4Y6 STARFUSION frameshift 6 4 NA [INTERCHROMOSOMAL[chr19--chr5]] PTPRS NA SLC6A3 NA NA Oncogene NA NA NA +19:5273442 5:1409849 PTPRS--SLC6A3 BS_W4H1D4Y6 ARRIBA frameshift 6 4 medium [INTERCHROMOSOMAL[chr19--chr5]],translocation PTPRS NA SLC6A3 NA NA Oncogene NA NA NA +15:56243125 15:51242950 RFX7--CYP19A1 BS_W4H1D4Y6 STARFUSION other 12 16 NA [INTRACHROMOSOMAL[chr15:4.75Mb]] RFX7 NA CYP19A1 NA TranscriptionFactor Oncogene NA NA NA +15:56243125 15:51242950 RFX7--CYP19A1 BS_W4H1D4Y6 ARRIBA other 11 16 high [INTRACHROMOSOMAL[chr15:4.75Mb]],deletion RFX7 NA CYP19A1 NA TranscriptionFactor Oncogene NA NA NA +15:56243125 15:51407919 RFX7--GLDN BS_W4H1D4Y6 ARRIBA other 14 7 high [INTRACHROMOSOMAL[chr15:4.68Mb]],deletion/5'-5' RFX7 NA GLDN NA TranscriptionFactor NA NA NA NA +14:63205047 19:51414320 RHOJ--AC008750.1 BS_W4H1D4Y6 STARFUSION other 11 4 NA [INTERCHROMOSOMAL[chr14--chr19]] RHOJ NA AC008750.1 NA NA NA NA NA NA +14:63205047 19:51414320 RHOJ--AC008750.1 BS_W4H1D4Y6 ARRIBA frameshift 11 4 high [INTERCHROMOSOMAL[chr14--chr19]],translocation RHOJ NA AC008750.1 NA NA NA NA NA NA +10:70877379 7:43881957 SGPL1--URGCP BS_W4H1D4Y6 STARFUSION other 11 5 NA [INTERCHROMOSOMAL[chr10--chr7]] SGPL1 NA URGCP NA NA NA NA NA NA +10:70877379 7:43881957 SGPL1--URGCP BS_W4H1D4Y6 ARRIBA frameshift 10 5 high [INTERCHROMOSOMAL[chr10--chr7]],translocation SGPL1 NA URGCP NA NA NA NA NA NA +10:70877379 7:43881957 SGPL1--URGCP-MRPS24 BS_W4H1D4Y6 STARFUSION other 11 3 NA [INTERCHROMOSOMAL[chr10--chr7]] SGPL1 NA URGCP-MRPS24 NA NA NA NA NA NA +10:70877379 7:43881957 SGPL1--URGCP-MRPS24 BS_W4H1D4Y6 ARRIBA frameshift 9 3 high [INTERCHROMOSOMAL[chr10--chr7]],translocation SGPL1 NA URGCP-MRPS24 NA NA NA NA NA NA +5:1063844 5:343893 SLC12A7--AHRR BS_W4H1D4Y6 STARFUSION frameshift 4 5 NA [INTRACHROMOSOMAL[chr5:0.61Mb]] SLC12A7 NA AHRR NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +5:1063844 5:343893 SLC12A7--AHRR BS_W4H1D4Y6 ARRIBA frameshift 4 5 high [INTRACHROMOSOMAL[chr5:0.61Mb]],inversion SLC12A7 NA AHRR NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +5:1063844 5:343893 SLC12A7--PDCD6 BS_W4H1D4Y6 ARRIBA frameshift 4 4 high [INTRACHROMOSOMAL[chr5:0.70Mb]],inversion SLC12A7 NA PDCD6 NA NA Oncogene NA NA NA +9:19831263 5:154799591 SLC24A2(44335)/AL158077.1(64537)--LARP1 BS_W4H1D4Y6 ARRIBA other 5 1 high [],translocation SLC24A2 AL158077.1 LARP1 NA NA NA NA NA NA +9:19849649 5:154799591 SLC24A2(62721)/AL158077.1(46151)--LARP1 BS_W4H1D4Y6 ARRIBA other 17 6 high [],translocation SLC24A2 AL158077.1 LARP1 NA NA NA NA NA NA +5:1409721 21:33030685 SLC6A3--AP000282.1 BS_W4H1D4Y6 ARRIBA frameshift 16 2 high [INTERCHROMOSOMAL[chr5--chr21]],translocation SLC6A3 NA AP000282.1 NA Oncogene NA NA NA NA +1:31261529 9:63825170 SNRNP40--MIR4477B(5516)/FRG1JP(6957) BS_W4H1D4Y6 ARRIBA frameshift 4 0 medium [],translocation SNRNP40 NA MIR4477B FRG1JP NA NA NA NA NA +5:142581914 X:108761279 SPRY4-AS1--AL035425.1(22376)/RNU6-309P(65485) BS_W4H1D4Y6 ARRIBA other 7 6 high [],translocation SPRY4-AS1 NA AL035425.1 RNU6-309P NA NA NA NA NA +15:79923452 15:80906663 ST20--CEMIP BS_W4H1D4Y6 STARFUSION other 12 1 NA [INTRACHROMOSOMAL[chr15:0.86Mb]] ST20 NA CEMIP NA TumorSuppressorGene NA NA NA NA +15:79923452 15:80906663 ST20--CEMIP BS_W4H1D4Y6 ARRIBA frameshift 11 1 high [INTRACHROMOSOMAL[chr15:0.86Mb]],inversion ST20 NA CEMIP NA TumorSuppressorGene NA NA NA NA +15:79923143 15:80906663 ST20-AS1--CEMIP BS_W4H1D4Y6 ARRIBA other 2 1 high [INTRACHROMOSOMAL[chr15:0.85Mb]],inversion/3'-3' ST20-AS1 NA CEMIP NA NA NA NA NA NA +15:79923452 15:80906663 ST20-MTHFS--CEMIP BS_W4H1D4Y6 STARFUSION frameshift 12 1 NA [INTRACHROMOSOMAL[chr15:0.86Mb]] ST20-MTHFS NA CEMIP NA NA NA NA NA NA +15:79923452 15:80906663 ST20-MTHFS--CEMIP BS_W4H1D4Y6 ARRIBA frameshift 12 1 high [INTRACHROMOSOMAL[chr15:0.86Mb]],inversion ST20-MTHFS NA CEMIP NA NA NA NA NA NA +21:32694228 21:28962593 SYNJ1--LTN1 BS_W4H1D4Y6 ARRIBA frameshift 15 3 high [INTRACHROMOSOMAL[chr21:3.64Mb]],inversion/5'-5' SYNJ1 NA LTN1 NA NA NA NA NA NA +21:31558927 21:28158332 TIAM1--LINC01695 BS_W4H1D4Y6 ARRIBA other 7 2 high [INTRACHROMOSOMAL[chr21:2.89Mb]],inversion/5'-5' TIAM1 NA LINC01695 NA Oncogene NA NA NA NA +12:49753081 5:139680364 TMBIM6--CXXC5 BS_W4H1D4Y6 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr12--chr5]],translocation TMBIM6 NA CXXC5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA +12:94650353 12:17695508 TMCC3--MIR3974(22114)/Y_RNA(15426) BS_W4H1D4Y6 ARRIBA frameshift 10 6 high [],inversion TMCC3 NA MIR3974 Y_RNA NA NA NA NA NA +12:94650353 12:17402935 TMCC3--TIMM17BP1(2021)/LINC02378(106418) BS_W4H1D4Y6 ARRIBA frameshift 10 5 high [],inversion TMCC3 NA TIMM17BP1 LINC02378 NA NA NA NA NA +15:79314005 15:90935544 TMED3--UNC45A BS_W4H1D4Y6 ARRIBA in-frame 3 1 medium [INTRACHROMOSOMAL[chr15:11.50Mb]],deletion TMED3 NA UNC45A NA NA NA NA NA NA +8:9580383 8:10301533 TNKS--MSRA BS_W4H1D4Y6 ARRIBA frameshift 1 0 low [CCLE,INTRACHROMOSOMAL[chr8:0.27Mb]],deletion TNKS NA MSRA NA NA NA NA NA NA +1:39883318 1:55832264 TRIT1--AL603840.1 BS_W4H1D4Y6 STARFUSION other 14 7 NA [INTRACHROMOSOMAL[chr1:15.70Mb]] TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA +1:39853970 1:55832264 TRIT1--AL603840.1 BS_W4H1D4Y6 STARFUSION other 12 7 NA [INTRACHROMOSOMAL[chr1:15.70Mb]] TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA +1:39850119 1:55832264 TRIT1--AL603840.1 BS_W4H1D4Y6 STARFUSION other 7 7 NA [INTRACHROMOSOMAL[chr1:15.70Mb]] TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA +1:39852731 1:55832264 TRIT1--AL603840.1 BS_W4H1D4Y6 STARFUSION other 3 7 NA [INTRACHROMOSOMAL[chr1:15.70Mb]] TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA +1:39850123 1:55832264 TRIT1--AL603840.1 BS_W4H1D4Y6 STARFUSION other 3 7 NA [INTRACHROMOSOMAL[chr1:15.70Mb]] TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA +1:39883318 1:55832264 TRIT1--AL603840.1 BS_W4H1D4Y6 ARRIBA frameshift 14 2 high [INTRACHROMOSOMAL[chr1:15.70Mb]],inversion TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA +1:39853970 1:55832264 TRIT1--AL603840.1 BS_W4H1D4Y6 ARRIBA frameshift 11 3 high [INTRACHROMOSOMAL[chr1:15.70Mb]],inversion TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA +1:39850119 1:55832264 TRIT1--AL603840.1 BS_W4H1D4Y6 ARRIBA frameshift 7 5 high [INTRACHROMOSOMAL[chr1:15.70Mb]],inversion TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA +1:39850123 1:55832264 TRIT1--AL603840.1 BS_W4H1D4Y6 ARRIBA frameshift 4 4 high [INTRACHROMOSOMAL[chr1:15.70Mb]],inversion TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA +1:39850123 1:55731180 TRIT1--AL603840.1 BS_W4H1D4Y6 ARRIBA frameshift 1 7 high [INTRACHROMOSOMAL[chr1:15.70Mb]],inversion TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA +1:39852731 1:55832264 TRIT1--AL603840.1 BS_W4H1D4Y6 ARRIBA frameshift 3 3 high [INTRACHROMOSOMAL[chr1:15.70Mb]],inversion TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA +1:39883318 1:55731180 TRIT1--AL603840.1 BS_W4H1D4Y6 ARRIBA frameshift 1 5 high [INTRACHROMOSOMAL[chr1:15.70Mb]],inversion TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA +15:77052385 15:77666960 TSPAN3--LINGO1-AS2 BS_W4H1D4Y6 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr15:0.58Mb]],inversion TSPAN3 NA LINGO1-AS2 NA NA NA NA NA NA +19:4457615 5:538744 UBXN6--MIR4456(2862)/AC106772.1(63876) BS_W4H1D4Y6 ARRIBA frameshift 11 0 medium [],translocation UBXN6 NA MIR4456 AC106772.1 NA NA NA NA NA +15:90936460 15:79845442 UNC45A--MTHFS BS_W4H1D4Y6 ARRIBA frameshift 5 3 high [INTRACHROMOSOMAL[chr15:11.03Mb]],inversion UNC45A NA MTHFS NA NA NA NA NA NA +15:90936460 15:76818910 UNC45A--SCAPER BS_W4H1D4Y6 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr15:14.02Mb]],duplication/5'-5' UNC45A NA SCAPER NA NA NA NA NA NA +15:90936460 15:79845442 UNC45A--ST20-MTHFS BS_W4H1D4Y6 ARRIBA frameshift 5 3 high [INTRACHROMOSOMAL[chr15:11.01Mb]],inversion UNC45A NA ST20-MTHFS NA NA NA NA NA NA +7:43887415 10:70978857 URGCP--AC073176.1(23216)/UNC5B(233713) BS_W4H1D4Y6 ARRIBA frameshift 4 1 high [],translocation URGCP NA AC073176.1 UNC5B NA NA NA TumorSuppressorGene NA +7:43887415 10:70997510 URGCP--AC073176.1(41869)/UNC5B(215060) BS_W4H1D4Y6 ARRIBA frameshift 4 1 high [],translocation URGCP NA AC073176.1 UNC5B NA NA NA TumorSuppressorGene NA +7:43887415 10:70927126 URGCP--PCBD1(38342)/AC073176.2(2799) BS_W4H1D4Y6 ARRIBA frameshift 3 0 high [],translocation URGCP NA PCBD1 AC073176.2 NA NA NA NA NA +7:43887415 10:70893759 URGCP--PCBD1(4975)/AC073176.2(36166) BS_W4H1D4Y6 ARRIBA other 2 1 high [],translocation URGCP NA PCBD1 AC073176.2 NA NA NA NA NA +7:43887415 10:70978857 URGCP-MRPS24--AC073176.1(23216)/UNC5B(233713) BS_W4H1D4Y6 ARRIBA frameshift 4 1 high [],translocation URGCP-MRPS24 NA AC073176.1 UNC5B NA NA NA TumorSuppressorGene NA +7:43887415 10:70997510 URGCP-MRPS24--AC073176.1(41869)/UNC5B(215060) BS_W4H1D4Y6 ARRIBA frameshift 4 1 high [],translocation URGCP-MRPS24 NA AC073176.1 UNC5B NA NA NA TumorSuppressorGene NA +7:43887415 10:70927126 URGCP-MRPS24--PCBD1(38342)/AC073176.2(2799) BS_W4H1D4Y6 ARRIBA frameshift 3 0 medium [],translocation URGCP-MRPS24 NA PCBD1 AC073176.2 NA NA NA NA NA +21:29024777 5:21731601 USP16--AC091946.1 BS_W4H1D4Y6 ARRIBA other 4 3 high [INTERCHROMOSOMAL[chr21--chr5]],translocation/5'-5' USP16 NA AC091946.1 NA NA NA NA NA NA +21:29024777 21:17419376 USP16--AP000457.1(122780)/RNU6-113P(12171) BS_W4H1D4Y6 ARRIBA other 71 4 high [],inversion USP16 NA AP000457.1 RNU6-113P NA NA NA NA NA +19:36996571 1:38380564 ZNF568--LINC01343(165797)/AL513479.1(3274) BS_W4H1D4Y6 ARRIBA frameshift 6 2 medium [],translocation ZNF568 NA LINC01343 AL513479.1 TranscriptionFactor NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_W7MFJZ5A ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_W7MFJZ5A ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:115262930 3:115676013 AC046136.1--GAP43 BS_W7MFJZ5A ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA +9:6669728 9:16668679 AL162411.1--BNC2 BS_W7MFJZ5A ARRIBA other 4 1 high [INTRACHROMOSOMAL[chr9:9.74Mb]],deletion/5'-5' AL162411.1 NA BNC2 NA NA TranscriptionFactor NA NA NA +8:61680967 4:150286033 ASPH--LRBA BS_W7MFJZ5A ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr8--chr4]],translocation ASPH NA LRBA NA NA Oncogene NA NA NA +9:63385752 9:94587469 BMS1P10(5741)/AL591438.1(195502)--FBP2 BS_W7MFJZ5A ARRIBA other 5 2 high [],inversion BMS1P10 AL591438.1 FBP2 NA NA NA NA NA NA +3:41199670 1:94903524 CTNNB1--CNN3 BS_W7MFJZ5A ARRIBA other 1 0 low [INTERCHROMOSOMAL[chr3--chr1]],translocation CTNNB1 NA CNN3 NA CosmicCensus, Oncogene NA NA NA NA +9:32526061 9:6558684 DDX58--GLDC BS_W7MFJZ5A ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr9:25.81Mb]],deletion DDX58 NA GLDC NA TumorSuppressorGene NA NA NA NA +1:98054503 1:98684885 MIR137HG(4640)/NFU1P2(22497)--SNX7 BS_W7MFJZ5A ARRIBA other 2 2 high [],deletion MIR137HG NFU1P2 SNX7 NA NA NA NA NA NA +9:20620654 9:15522398 MLLT3--PSIP1(11379)/AL513423.1(2178) BS_W7MFJZ5A ARRIBA frameshift 2 0 medium [],deletion MLLT3 NA PSIP1 AL513423.1 CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_W7MFJZ5A ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +9:137586967 9:4287562 ZMYND19--GLIS3 BS_W7MFJZ5A ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr9:133.23Mb]],inversion/5'-5' ZMYND19 NA GLIS3 NA NA TranscriptionFactor NA NA NA +1:179229241 1:180314722 ABL2--ACBD6 BS_X0XXN9BK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr1:1.04Mb]],duplication ABL2 NA ACBD6 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA +2:9335179 2:12988219 ASAP2--AC064875.1 BS_X0XXN9BK ARRIBA frameshift 5 4 high [INTRACHROMOSOMAL[chr2:3.56Mb]],deletion/5'-5' ASAP2 NA AC064875.1 NA NA NA NA NA NA +2:9335179 2:12961840 ASAP2--TRIB2(219106)/AC064875.1(4944) BS_X0XXN9BK ARRIBA frameshift 16 7 high [],deletion ASAP2 NA TRIB2 AC064875.1 NA Kinase NA NA NA +12:30719079 12:29121575 CAPRIN2--AC024255.1(142890)/AC012150.1(21621) BS_X0XXN9BK ARRIBA frameshift 3 0 high [],deletion CAPRIN2 NA AC024255.1 AC012150.1 NA NA NA NA NA +12:30719079 12:29072391 CAPRIN2--AC024255.1(93706)/AC012150.1(70805) BS_X0XXN9BK ARRIBA frameshift 2 0 medium [],deletion CAPRIN2 NA AC024255.1 AC012150.1 NA NA NA NA NA +2:96806148 5:79130931 CNNM4--BHMT BS_X0XXN9BK ARRIBA other 2 0 medium [INTERCHROMOSOMAL[chr2--chr5]],translocation/3'-3' CNNM4 NA BHMT NA Oncogene NA NA NA NA +8:103426145 8:67692321 DCAF13--CPA6 BS_X0XXN9BK ARRIBA frameshift 11 0 high [INTRACHROMOSOMAL[chr8:35.67Mb]],inversion DCAF13 NA CPA6 NA NA NA NA NA NA +8:103426145 8:67624251 DCAF13--CPA6 BS_X0XXN9BK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:35.67Mb]],inversion DCAF13 NA CPA6 NA NA NA NA NA NA +21:46545961 4:190118361 DIP2A--DUX4L2(26082)/DUX4(55413) BS_X0XXN9BK ARRIBA frameshift 4 0 medium [],translocation DIP2A NA DUX4L2 DUX4 NA NA NA Oncogene, TranscriptionFactor NA +1:225652686 1:2484448 ENAH--PLCH2 BS_X0XXN9BK STARFUSION frameshift 35 16 NA [INTRACHROMOSOMAL[chr1:222.98Mb]] ENAH NA PLCH2 NA Oncogene Oncogene NA NA NA +1:225652686 1:2484448 ENAH--PLCH2 BS_X0XXN9BK ARRIBA frameshift 30 16 high [INTRACHROMOSOMAL[chr1:222.98Mb]],inversion ENAH NA PLCH2 NA Oncogene Oncogene NA NA NA +6:108561829 6:104688287 FOXO3--AL356967.1(616)/HACE1(39806) BS_X0XXN9BK ARRIBA frameshift 7 1 high [],inversion FOXO3 NA AL356967.1 HACE1 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA TumorSuppressorGene NA +6:108561829 6:104683294 FOXO3--NPM1P10(656531)/AL356967.1(3947) BS_X0XXN9BK ARRIBA frameshift 1 1 high [],inversion FOXO3 NA NPM1P10 AL356967.1 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA +1:245156683 1:245863886 KIF26B--SMYD3 BS_X0XXN9BK ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr1:0.04Mb],LOCAL_INVERSION:+:-:[39911]],inversion KIF26B NA SMYD3 NA NA Oncogene, TranscriptionFactor NA NA TCGAFusion +1:245156683 1:245929937 KIF26B--SMYD3 BS_X0XXN9BK ARRIBA in-frame 1 0 low [FA_CancerSupp,ChimerSeq,CCLE,INTRACHROMOSOMAL[chr1:0.04Mb],LOCAL_INVERSION:+:-:[39911]],inversion KIF26B NA SMYD3 NA NA Oncogene, TranscriptionFactor NA NA TCGAFusion +6:108074250 6:163534982 OSTM1--QKI BS_X0XXN9BK STARFUSION in-frame 80 27 NA [INTRACHROMOSOMAL[chr6:55.25Mb]] OSTM1 NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA +6:108074250 6:163534982 OSTM1--QKI BS_X0XXN9BK ARRIBA in-frame 71 24 high [INTRACHROMOSOMAL[chr6:55.25Mb]],inversion OSTM1 NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA +6:108165567 6:163534982 OSTM1--QKI BS_X0XXN9BK ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr6:55.25Mb]],inversion OSTM1 NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA +2:46007661 19:8659552 PRKCE--LINC01862(20903)/AC243312.1(17292) BS_X0XXN9BK ARRIBA frameshift 2 1 high [],translocation PRKCE NA LINC01862 AC243312.1 TumorSuppressorGene, Kinase NA NA NA NA +20:42282489 3:173892573 PTPRT--NLGN1 BS_X0XXN9BK ARRIBA frameshift 4 0 high [INTERCHROMOSOMAL[chr20--chr3]],translocation/5'-5' PTPRT NA NLGN1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +2:233486 2:49407798 SH3YL1--AC009975.1 BS_X0XXN9BK ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr2:48.54Mb]],duplication/5'-5' SH3YL1 NA AC009975.1 NA NA NA NA NA NA +2:234160 2:49331980 SH3YL1--AC009975.2 BS_X0XXN9BK ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr2:48.94Mb]],duplication SH3YL1 NA AC009975.2 NA NA NA NA NA NA +15:25278884 15:44413336 SNHG14--CASC4 BS_X0XXN9BK ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr15:18.87Mb]],deletion SNHG14 NA CASC4 NA NA NA NA NA NA +1:3652641 1:3892996 TP73--C1orf174 BS_X0XXN9BK STARFUSION other 55 8 NA [INTRACHROMOSOMAL[chr1:0.15Mb]] TP73 NA C1orf174 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA +1:3652641 1:3892996 TP73--C1orf174 BS_X0XXN9BK ARRIBA other 58 8 high [INTRACHROMOSOMAL[chr1:0.15Mb]],inversion TP73 NA C1orf174 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA +1:3652641 1:3896183 TP73--C1orf174 BS_X0XXN9BK ARRIBA other 1 8 high [INTRACHROMOSOMAL[chr1:0.15Mb]],inversion TP73 NA C1orf174 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA +4:1366431 4:1311979 UVSSA--MAEA BS_X0XXN9BK ARRIBA frameshift 1 0 low [CCLE,GTEx,INTRACHROMOSOMAL[chr4:0.01Mb],LOCAL_REARRANGEMENT:+:[7119]],duplication UVSSA NA MAEA NA NA NA NA NA NA +4:1355245 4:1311979 UVSSA--MAEA BS_X0XXN9BK ARRIBA in-frame 1 0 low [CCLE,GTEx,INTRACHROMOSOMAL[chr4:0.01Mb],LOCAL_REARRANGEMENT:+:[7119]],duplication UVSSA NA MAEA NA NA NA NA NA NA +3:21564574 3:74499785 ZNF385D--CNTN3 BS_X0XXN9BK ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr3:51.89Mb]],duplication ZNF385D NA CNTN3 NA TranscriptionFactor NA NA NA NA +8:80821374 8:79919148 ZNF704--AC036214.3 BS_X0XXN9BK STARFUSION other 263 108 NA [INTRACHROMOSOMAL[chr8:0.55Mb]] ZNF704 NA AC036214.3 NA TranscriptionFactor NA NA NA NA +8:80821374 8:79919148 ZNF704--AC036214.3 BS_X0XXN9BK ARRIBA in-frame 233 81 high [INTRACHROMOSOMAL[chr8:0.55Mb]],deletion ZNF704 NA AC036214.3 NA TranscriptionFactor NA NA NA NA +8:80873544 8:79919148 ZNF704--AC036214.3 BS_X0XXN9BK ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:0.55Mb]],deletion ZNF704 NA AC036214.3 NA TranscriptionFactor NA NA NA NA +8:80821374 8:79919148 ZNF704--MRPS28 BS_X0XXN9BK STARFUSION in-frame 263 108 NA [INTRACHROMOSOMAL[chr8:0.60Mb]] ZNF704 NA MRPS28 NA TranscriptionFactor NA NA NA NA +8:80821374 8:79919148 ZNF704--MRPS28 BS_X0XXN9BK ARRIBA in-frame 237 85 high [INTRACHROMOSOMAL[chr8:0.60Mb]],deletion ZNF704 NA MRPS28 NA TranscriptionFactor NA NA NA NA +8:80873544 8:79919148 ZNF704--MRPS28 BS_X0XXN9BK ARRIBA other 1 2 medium [INTRACHROMOSOMAL[chr8:0.60Mb]],deletion ZNF704 NA MRPS28 NA TranscriptionFactor NA NA NA NA +2:227491640 2:229818512 AGFG1--TRIP12 BS_X4DD4KSZ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr2:2.20Mb]],inversion AGFG1 NA TRIP12 NA NA NA NA NA NA +4:113174413 16:29082044 ANK2--AC009093.3 BS_X4DD4KSZ ARRIBA other 5 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation ANK2 NA AC009093.3 NA NA NA NA NA NA +11:100687832 11:102114144 ARHGAP42--YAP1 BS_X4DD4KSZ STARFUSION frameshift 28 5 NA [INTRACHROMOSOMAL[chr11:1.12Mb]] ARHGAP42 NA YAP1 NA NA TumorSuppressorGene, Oncogene NA NA NA +11:100738498 11:102114144 ARHGAP42--YAP1 BS_X4DD4KSZ STARFUSION other 10 5 NA [INTRACHROMOSOMAL[chr11:1.12Mb]] ARHGAP42 NA YAP1 NA NA TumorSuppressorGene, Oncogene NA NA NA +11:100687832 11:102114144 ARHGAP42--YAP1 BS_X4DD4KSZ ARRIBA frameshift 27 3 high [INTRACHROMOSOMAL[chr11:1.12Mb]],deletion ARHGAP42 NA YAP1 NA NA TumorSuppressorGene, Oncogene NA NA NA +11:100738498 11:102114144 ARHGAP42--YAP1 BS_X4DD4KSZ ARRIBA other 9 4 high [INTRACHROMOSOMAL[chr11:1.12Mb]],deletion ARHGAP42 NA YAP1 NA NA TumorSuppressorGene, Oncogene NA NA NA +11:100687832 11:102162456 ARHGAP42--YAP1 BS_X4DD4KSZ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr11:1.12Mb]],deletion ARHGAP42 NA YAP1 NA NA TumorSuppressorGene, Oncogene NA NA NA +X:77910835 X:77902643 ATP7A--COX7B BS_X4DD4KSZ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:+:[3283]],duplication ATP7A NA COX7B NA NA NA NA NA NA +X:78020398 X:77905184 ATP7A--COX7B BS_X4DD4KSZ ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chrX:0.00Mb],LOCAL_REARRANGEMENT:+:[3283]],duplication ATP7A NA COX7B NA NA NA NA NA NA +19:40322028 19:6734307 C19orf47--GPR108 BS_X4DD4KSZ ARRIBA frameshift 1 2 medium [INTRACHROMOSOMAL[chr19:33.58Mb]],deletion C19orf47 NA GPR108 NA NA NA NA NA NA +21:26566266 21:25911962 CYYR1--APP BS_X4DD4KSZ ARRIBA frameshift 1 0 low [GTEx,INTRACHROMOSOMAL[chr21:0.30Mb]],deletion CYYR1 NA APP NA NA NA NA NA NA +21:26566266 21:26000182 CYYR1--APP BS_X4DD4KSZ ARRIBA frameshift 1 0 low [GTEx,INTRACHROMOSOMAL[chr21:0.30Mb]],deletion CYYR1 NA APP NA NA NA NA NA NA +8:88327075 8:87751317 MMP16--AF121898.1 BS_X4DD4KSZ ARRIBA frameshift 2 0 medium [INTRACHROMOSOMAL[chr8:0.28Mb]],deletion MMP16 NA AF121898.1 NA NA NA NA NA NA +8:88056128 8:87542489 MMP16--AF121898.1 BS_X4DD4KSZ ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:0.28Mb]],deletion MMP16 NA AF121898.1 NA NA NA NA NA NA +14:26779879 14:26480143 NOVA1-AS1--NOVA1 BS_X4DD4KSZ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.00Mb],LOCAL_INVERSION:+:-:[658]],inversion NOVA1-AS1 NA NOVA1 NA NA NA NA NA NA +14:26731156 14:26480143 NOVA1-AS1--NOVA1 BS_X4DD4KSZ ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr14:0.00Mb],LOCAL_INVERSION:+:-:[658]],inversion NOVA1-AS1 NA NOVA1 NA NA NA NA NA NA +5:112142197 5:111735507 NREP-AS1(124888)/EPB41L4A(244)--NREP BS_X4DD4KSZ ARRIBA other 3 0 medium [],deletion NREP-AS1 EPB41L4A NREP NA NA NA NA NA NA +20:64268010 20:52367410 PCMTD2--LINC01524 BS_X4DD4KSZ ARRIBA frameshift 8 0 high [INTRACHROMOSOMAL[chr20:11.61Mb]],inversion/3'-3' PCMTD2 NA LINC01524 NA NA NA NA NA NA +14:64704704 14:65561337 PLEKHG3--FUT8 BS_X4DD4KSZ STARFUSION other 15 3 NA [INTRACHROMOSOMAL[chr14:0.66Mb]] PLEKHG3 NA FUT8 NA NA Oncogene NA NA NA +14:64704704 14:65561337 PLEKHG3--FUT8 BS_X4DD4KSZ ARRIBA other 15 3 high [INTRACHROMOSOMAL[chr14:0.66Mb]],deletion PLEKHG3 NA FUT8 NA NA Oncogene NA NA NA +6:111482750 6:111780635 REV3L--FYN BS_X4DD4KSZ ARRIBA frameshift 1 1 medium [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion +6:111482750 6:111720062 REV3L--FYN BS_X4DD4KSZ ARRIBA frameshift 1 1 medium [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion +19:40534343 19:33387481 SPTBN4--PEPD BS_X4DD4KSZ ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr19:6.94Mb]],inversion SPTBN4 NA PEPD NA NA NA NA NA NA +2:229879982 2:227531091 TRIP12--AGFG1 BS_X4DD4KSZ ARRIBA frameshift 1 0 low [ChimerSeq,INTRACHROMOSOMAL[chr2:2.20Mb]],inversion TRIP12 NA AGFG1 NA NA NA NA NA NA +19:28721954 10:34401917 AC005524.1--PARD3 BS_XGDPK33A ARRIBA other 1 1 low [INTERCHROMOSOMAL[chr19--chr10]],translocation AC005524.1 NA PARD3 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_XGDPK33A ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_XGDPK33A ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +3:115262930 3:115676013 AC046136.1--GAP43 BS_XGDPK33A ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr3:0.34Mb]],deletion AC046136.1 NA GAP43 NA NA NA NA NA NA +8:129679928 8:129102389 AC103718.1--LINC00976(136388)/LINC00977(114078) BS_XGDPK33A ARRIBA other 3 3 high [],deletion AC103718.1 NA LINC00976 LINC00977 NA NA NA NA NA +8:129679928 8:129223369 AC103718.1--LINC00977 BS_XGDPK33A ARRIBA other 2 0 low [INTRACHROMOSOMAL[chr8:0.44Mb]],deletion AC103718.1 NA LINC00977 NA NA NA NA NA NA +20:31721655 22:42080582 BCL2L1--SMDT1 BS_XGDPK33A ARRIBA frameshift 3 0 medium [INTERCHROMOSOMAL[chr20--chr22]],translocation/5'-5' BCL2L1 NA SMDT1 NA Oncogene NA NA NA NA +1:156421555 9:95086682 C1orf61--C9orf3 BS_XGDPK33A ARRIBA other 4 0 medium [FA_CancerSupp,INTERCHROMOSOMAL[chr1--chr9]],translocation C1orf61 NA C9orf3 NA NA NA NA NA NA +8:129679928 8:129102389 CCDC26--LINC00976(136388)/LINC00977(114078) BS_XGDPK33A ARRIBA other 1 2 high [],deletion CCDC26 NA LINC00976 LINC00977 NA NA NA NA NA +8:87970931 8:87542489 DCAF4L2(96863)/AC037450.1(3234)--AF121898.1 BS_XGDPK33A ARRIBA other 4 1 high [],deletion DCAF4L2 AC037450.1 AF121898.1 NA NA NA NA NA NA +18:79451816 18:78992074 NFATC1--SALL3 BS_XGDPK33A ARRIBA in-frame 1 1 low [INTRACHROMOSOMAL[chr18:0.39Mb]],duplication NFATC1 NA SALL3 NA Oncogene, TranscriptionFactor TranscriptionFactor NA NA NA +11:47847848 11:47906402 NUP160--AC023232.1(795)/PTPRJ(74156) BS_XGDPK33A ARRIBA frameshift 22 26 high [],duplication NUP160 NA AC023232.1 PTPRJ NA NA NA TumorSuppressorGene, Oncogene NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_XGDPK33A ARRIBA other 8 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +3:101330410 3:101331985 SENP7--SENP7 BS_XGDPK33A ARRIBA other 2 1 medium [SELFIE,[\ChimerSeq\],INTRACHROMOSOMAL[chr3:0.19Mb]],duplication SENP7 NA SENP7 NA NA NA NA NA NA +15:25100890 15:24967932 SNHG14--SNURF BS_XGDPK33A ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr15:0.00Mb],LOCAL_REARRANGEMENT:+:[733]],duplication SNHG14 NA SNURF NA NA NA NA NA NA +19:12881290 1:159999494 DNASE2--KCNJ10 BS_XM1AHBDJ ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr19--chr1]],translocation DNASE2 NA KCNJ10 NA NA NA NA NA NA +16:981145 16:5691792 AC009041.2--RBFOX1 BS_XZM79E42 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr16:4.26Mb]],inversion AC009041.2 NA RBFOX1 NA NA NA NA NA NA +16:3515591 16:5880516 CLUAP1--RBFOX1 BS_XZM79E42 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr16:1.70Mb]],inversion/3'-3' CLUAP1 NA RBFOX1 NA NA NA NA NA NA +16:10929217 16:10845295 DEXI--AC133065.3(3751)/AC133065.1(19619) BS_XZM79E42 ARRIBA other 2 1 medium [],inversion DEXI NA AC133065.3 AC133065.1 NA NA NA NA NA +10:125880543 10:111421756 DHX32--AC021035.1(69653)/RPS6P15(76435) BS_XZM79E42 ARRIBA frameshift 2 2 high [],deletion DHX32 NA AC021035.1 RPS6P15 NA NA NA NA NA +10:125880543 10:111501676 DHX32--RPS6P15(2735)/GPAM(648188) BS_XZM79E42 ARRIBA frameshift 39 5 high [],deletion DHX32 NA RPS6P15 GPAM NA NA NA NA NA +10:125997485 10:125706582 FANK1--AL158835.1 BS_XZM79E42 ARRIBA frameshift 3 0 high [INTRACHROMOSOMAL[chr10:0.19Mb]],duplication FANK1 NA AL158835.1 NA NA NA NA NA NA +16:4316254 16:8735699 GLIS2--ABAT BS_XZM79E42 ARRIBA other 17 0 medium [INTRACHROMOSOMAL[chr16:4.33Mb]],deletion GLIS2 NA ABAT NA TranscriptionFactor NA NA NA NA +16:981145 16:5691792 LMF1--RBFOX1 BS_XZM79E42 ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr16:4.26Mb]],inversion LMF1 NA RBFOX1 NA Oncogene NA NA NA NA +3:183389696 3:149527969 MCF2L2--WWTR1 BS_XZM79E42 ARRIBA frameshift 7 1 high [INTRACHROMOSOMAL[chr3:33.44Mb]],deletion MCF2L2 NA WWTR1 NA NA CosmicCensus NA NA NA +10:110644645 10:111117960 RBM20--AL355863.1(12712)/BTBD7P2(204818) BS_XZM79E42 ARRIBA frameshift 3 0 medium [],deletion RBM20 NA AL355863.1 BTBD7P2 NA NA NA NA NA +18:23453502 16:8740635 RIOK3--ABAT BS_XZM79E42 ARRIBA frameshift 1 1 high [INTERCHROMOSOMAL[chr18--chr16]],translocation/5'-5' RIOK3 NA ABAT NA Kinase NA NA NA NA +18:23453502 16:8781444 RIOK3--TMEM186 BS_XZM79E42 ARRIBA frameshift 3 1 medium [INTERCHROMOSOMAL[chr18--chr16]],translocation RIOK3 NA TMEM186 NA Kinase NA NA NA NA +18:23453502 16:8796590 RIOK3--TMEM186 BS_XZM79E42 ARRIBA in-frame 1 1 medium [INTERCHROMOSOMAL[chr18--chr16]],translocation RIOK3 NA TMEM186 NA Kinase NA NA NA NA +3:149656876 10:124613264 WWTR1--LHPP BS_XZM79E42 ARRIBA in-frame 1 1 low [INTERCHROMOSOMAL[chr3--chr10]],translocation WWTR1 NA LHPP NA CosmicCensus NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_YDEVMD24 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_YDEVMD24 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +17:44911672 16:15636342 GFAP--MARF1 BS_YDEVMD24 ARRIBA in-frame 3 0 low [INTERCHROMOSOMAL[chr17--chr16]],translocation GFAP NA MARF1 NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_YDEVMD24 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +4:337986 11:108297287 ZNF141--ATM BS_YDEVMD24 ARRIBA frameshift 2 0 medium [INTERCHROMOSOMAL[chr4--chr11]],translocation ZNF141 NA ATM NA TranscriptionFactor Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_Z3RCA1T9 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_Z3RCA1T9 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +8:129679928 8:129707182 AC103718.1--AC103718.1(23503)/MTRF1LP2(21562) BS_Z3RCA1T9 ARRIBA other 30 11 high [],duplication AC103718.1 NA AC103718.1 MTRF1LP2 NA NA NA NA NA +8:129679928 8:129102389 AC103718.1--LINC00976(136388)/LINC00977(114078) BS_Z3RCA1T9 ARRIBA other 3 0 high [],deletion AC103718.1 NA LINC00976 LINC00977 NA NA NA NA NA +5:132579502 7:156963905 AC116366.3--NOM1 BS_Z3RCA1T9 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr5--chr7]],translocation AC116366.3 NA NOM1 NA NA NA NA NA NA +4:3504917 4:3506442 AL590235.1(460)/LRPAP1(1459)--LRPAP1 BS_Z3RCA1T9 ARRIBA other 1 2 medium [],duplication AL590235.1 LRPAP1 LRPAP1 NA NA NA NA NA NA +1:155459799 4:14227 ASH1L--BNIP3P41(34869) BS_Z3RCA1T9 ARRIBA frameshift 1 2 high [],translocation ASH1L NA BNIP3P41 NA TranscriptionFactor NA NA NA NA +1:155459797 4:190118361 ASH1L--DUX4L2(26082)/DUX4(55413) BS_Z3RCA1T9 ARRIBA frameshift 19 5 high [],translocation ASH1L NA DUX4L2 DUX4 TranscriptionFactor NA NA Oncogene, TranscriptionFactor NA +8:129679928 8:129707182 CCDC26--AC103718.1(23503)/MTRF1LP2(21562) BS_Z3RCA1T9 ARRIBA other 26 5 high [],duplication CCDC26 NA AC103718.1 MTRF1LP2 NA NA NA NA NA +8:129679928 8:129102389 CCDC26--LINC00976(136388)/LINC00977(114078) BS_Z3RCA1T9 ARRIBA other 3 0 high [],deletion CCDC26 NA LINC00976 LINC00977 NA NA NA NA NA +12:2820225 12:5647801 ITFG2--ANO2 BS_Z3RCA1T9 STARFUSION in-frame 16 12 NA [INTRACHROMOSOMAL[chr12:2.67Mb]] ITFG2 NA ANO2 NA NA NA NA NA NA +12:2824252 12:5647801 ITFG2--ANO2 BS_Z3RCA1T9 STARFUSION other 6 12 NA [INTRACHROMOSOMAL[chr12:2.67Mb]] ITFG2 NA ANO2 NA NA NA NA NA NA +12:2817950 12:5647801 ITFG2--ANO2 BS_Z3RCA1T9 STARFUSION in-frame 3 12 NA [INTRACHROMOSOMAL[chr12:2.67Mb]] ITFG2 NA ANO2 NA NA NA NA NA NA +12:2812856 12:5647801 ITFG2--ANO2 BS_Z3RCA1T9 STARFUSION in-frame 3 12 NA [INTRACHROMOSOMAL[chr12:2.67Mb]] ITFG2 NA ANO2 NA NA NA NA NA NA +12:2820225 12:5647801 ITFG2--ANO2 BS_Z3RCA1T9 ARRIBA in-frame 16 7 high [INTRACHROMOSOMAL[chr12:2.67Mb]],inversion ITFG2 NA ANO2 NA NA NA NA NA NA +12:2824252 12:5647801 ITFG2--ANO2 BS_Z3RCA1T9 ARRIBA other 6 10 high [INTRACHROMOSOMAL[chr12:2.67Mb]],inversion ITFG2 NA ANO2 NA NA NA NA NA NA +12:2818277 12:5647801 ITFG2--ANO2 BS_Z3RCA1T9 ARRIBA frameshift 1 4 medium [INTRACHROMOSOMAL[chr12:2.67Mb]],inversion ITFG2 NA ANO2 NA NA NA NA NA NA +12:2817950 12:5647801 ITFG2--ANO2 BS_Z3RCA1T9 ARRIBA in-frame 3 2 medium [INTRACHROMOSOMAL[chr12:2.67Mb]],inversion ITFG2 NA ANO2 NA NA NA NA NA NA +12:2812856 12:5647801 ITFG2--ANO2 BS_Z3RCA1T9 ARRIBA in-frame 2 2 medium [INTRACHROMOSOMAL[chr12:2.67Mb]],inversion ITFG2 NA ANO2 NA NA NA NA NA NA +18:77016832 6:163455279 MBP--QKI BS_Z3RCA1T9 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr18--chr6]],translocation MBP NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA +18:76988877 6:163534982 MBP--QKI BS_Z3RCA1T9 ARRIBA in-frame 1 1 medium [INTERCHROMOSOMAL[chr18--chr6]],translocation MBP NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA +8:88116507 8:87428546 MMP16--CNBD1 BS_Z3RCA1T9 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr8:0.42Mb]],inversion MMP16 NA CNBD1 NA NA CosmicCensus NA NA NA +8:88167669 8:87428546 MMP16--CNBD1 BS_Z3RCA1T9 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr8:0.42Mb]],inversion MMP16 NA CNBD1 NA NA CosmicCensus NA NA NA +8:127939676 8:129399684 PVT1--CCDC26 BS_Z3RCA1T9 ARRIBA other 1 1 low [CCLE,INTRACHROMOSOMAL[chr8:1.25Mb]],inversion PVT1 NA CCDC26 NA Oncogene NA NA NA NA +5:132579502 7:156963905 RAD50--NOM1 BS_Z3RCA1T9 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr5--chr7]],translocation RAD50 NA NOM1 NA NA NA NA NA NA +6:111343925 6:111720062 REV3L--FYN BS_Z3RCA1T9 ARRIBA frameshift 1 0 low [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion +6:111482750 6:111674630 REV3L--FYN BS_Z3RCA1T9 ARRIBA in-frame 1 0 low [CCLE,ChimerSeq,GTEx,Larsson_TCGA,INTRACHROMOSOMAL[chr6:0.18Mb]],duplication REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion +16:29082041 4:113174416 RRN3P2--ANK2 BS_Z3RCA1T9 ARRIBA other 9 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +1:175528269 1:176027688 TNR--RFWD2 BS_Z3RCA1T9 ARRIBA other 1 1 medium [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.20Mb]],duplication TNR NA RFWD2 NA Oncogene TumorSuppressorGene NA NA TCGAFusion +1:175743226 1:176149074 TNR--RFWD2 BS_Z3RCA1T9 ARRIBA other 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr1:0.20Mb]],duplication TNR NA RFWD2 NA Oncogene TumorSuppressorGene NA NA TCGAFusion +12:4669817 12:29512120 AC005833.3--TMTC1 BS_ZD5HN296 ARRIBA other 5 1 high [INTRACHROMOSOMAL[chr12:24.76Mb]],inversion AC005833.3 NA TMTC1 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.3--ANK2 BS_ZD5HN296 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation AC009093.3 NA ANK2 NA NA NA NA NA NA +16:29082041 4:113174416 AC009093.9--ANK2 BS_ZD5HN296 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' AC009093.9 NA ANK2 NA NA NA NA NA NA +11:6481852 11:33980240 AC084337.2--LMO2(87951)/CAPRIN1(71443) BS_ZD5HN296 ARRIBA frameshift 3 1 high [],inversion AC084337.2 NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA +11:130140483 11:66227504 APLP2--PACS1 BS_ZD5HN296 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:63.83Mb]],duplication APLP2 NA PACS1 NA NA NA NA NA NA +11:1390375 11:32143144 BRSK2--AL078612.2 BS_ZD5HN296 STARFUSION other 33 9 NA [INTRACHROMOSOMAL[chr11:30.67Mb]] BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA +11:1390375 11:32143144 BRSK2--AL078612.2 BS_ZD5HN296 ARRIBA frameshift 32 6 high [INTRACHROMOSOMAL[chr11:30.67Mb]],deletion BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA +11:1390375 11:32137121 BRSK2--AL078612.2 BS_ZD5HN296 ARRIBA frameshift 1 9 high [INTRACHROMOSOMAL[chr11:30.67Mb]],deletion BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA +11:35190065 11:29552360 CD44--AC110058.1 BS_ZD5HN296 STARFUSION other 89 32 NA [INTRACHROMOSOMAL[chr11:5.59Mb]] CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA +11:35190065 11:29552360 CD44--AC110058.1 BS_ZD5HN296 ARRIBA frameshift 84 29 high [INTRACHROMOSOMAL[chr11:5.59Mb]],duplication CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA +11:35189972 11:29552360 CD44--AC110058.1 BS_ZD5HN296 ARRIBA frameshift 1 7 medium [INTRACHROMOSOMAL[chr11:5.59Mb]],duplication CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA +11:35190065 11:30112332 CD44--AC124657.1(27989)/AL358944.1(54831) BS_ZD5HN296 ARRIBA frameshift 6 0 medium [],duplication CD44 NA AC124657.1 AL358944.1 TumorSuppressorGene, Oncogene NA NA NA NA +11:35190065 11:23412045 CD44--WIZP1(5942)/MIR8054(7060) BS_ZD5HN296 ARRIBA frameshift 41 14 high [],inversion CD44 NA WIZP1 MIR8054 TumorSuppressorGene, Oncogene NA NA NA NA +9:21994139 9:25997129 CDKN2A--FAM71BP1(58695)/AL353753.1(69546) BS_ZD5HN296 ARRIBA frameshift 3 0 high [],inversion CDKN2A NA FAM71BP1 AL353753.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +11:33096827 11:32036069 CSTF3--AL035078.1 BS_ZD5HN296 ARRIBA frameshift 4 0 low [INTRACHROMOSOMAL[chr11:1.04Mb]],deletion CSTF3 NA AL035078.1 NA NA NA NA NA NA +11:33096835 11:32029277 CSTF3--RCN1 BS_ZD5HN296 ARRIBA frameshift 1 4 high [INTRACHROMOSOMAL[chr11:0.97Mb]],deletion/5'-5' CSTF3 NA RCN1 NA NA NA NA NA NA +11:6639817 11:29881482 DCHS1--AC107973.1 BS_ZD5HN296 ARRIBA frameshift 3 1 high [INTRACHROMOSOMAL[chr11:23.06Mb]],inversion DCHS1 NA AC107973.1 NA NA NA NA NA NA +11:9264961 11:43679338 DENND5A--AC068205.2 BS_ZD5HN296 ARRIBA frameshift 8 6 high [INTRACHROMOSOMAL[chr11:34.38Mb]],duplication/5'-5' DENND5A NA AC068205.2 NA NA NA NA NA NA +11:6497450 11:7038566 DNHD1--NLRP14 BS_ZD5HN296 ARRIBA other 1 1 high [INTRACHROMOSOMAL[chr11:0.43Mb]],inversion/3'-3' DNHD1 NA NLRP14 NA NA NA NA NA NA +9:137762820 9:137096237 EHMT1--MAN1B1 BS_ZD5HN296 STARFUSION in-frame 8 1 NA [INTRACHROMOSOMAL[chr9:0.51Mb]] EHMT1 NA MAN1B1 NA Oncogene NA NA NA NA +9:137762820 9:137096237 EHMT1--MAN1B1 BS_ZD5HN296 ARRIBA in-frame 8 1 high [INTRACHROMOSOMAL[chr9:0.51Mb]],duplication EHMT1 NA MAN1B1 NA Oncogene NA NA NA NA +22:31439830 22:41539433 EIF4ENIF1--POLR3H BS_ZD5HN296 STARFUSION other 3 7 NA [INTRACHROMOSOMAL[chr22:10.03Mb]] EIF4ENIF1 NA POLR3H NA NA NA NA NA NA +22:31439830 22:41539433 EIF4ENIF1--POLR3H BS_ZD5HN296 ARRIBA frameshift 3 5 medium [INTRACHROMOSOMAL[chr22:10.03Mb]],duplication EIF4ENIF1 NA POLR3H NA NA NA NA NA NA +8:118110085 8:96386050 EXT1--AP003548.1 BS_ZD5HN296 STARFUSION other 8 2 NA [INTRACHROMOSOMAL[chr8:21.41Mb]] EXT1 NA AP003548.1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +8:118110085 8:96386050 EXT1--AP003548.1 BS_ZD5HN296 ARRIBA frameshift 7 2 high [INTRACHROMOSOMAL[chr8:21.41Mb]],deletion EXT1 NA AP003548.1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA +11:33748777 11:35017015 FBXO3--PDHX BS_ZD5HN296 ARRIBA frameshift 4 1 high [INTRACHROMOSOMAL[chr11:1.14Mb]],inversion FBXO3 NA PDHX NA NA NA NA NA NA +9:20916937 12:21759914 FOCAD--AC010197.1 BS_ZD5HN296 ARRIBA frameshift 6 0 high [INTERCHROMOSOMAL[chr9--chr12]],translocation FOCAD NA AC010197.1 NA NA NA NA NA NA +11:33287511 11:32101418 HIPK3--AL078612.1 BS_ZD5HN296 ARRIBA frameshift 16 1 high [INTRACHROMOSOMAL[chr11:1.15Mb]],inversion HIPK3 NA AL078612.1 NA Kinase, Kinase NA NA NA NA +11:33287511 11:32101418 HIPK3--RCN1 BS_ZD5HN296 ARRIBA frameshift 17 1 high [INTRACHROMOSOMAL[chr11:1.15Mb]],inversion/3'-3' HIPK3 NA RCN1 NA Kinase, Kinase NA NA NA NA +11:9384847 11:33286413 IPO7--HIPK3 BS_ZD5HN296 STARFUSION other 5 6 NA [INTRACHROMOSOMAL[chr11:23.81Mb]] IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA +11:9392320 11:33286413 IPO7--HIPK3 BS_ZD5HN296 STARFUSION other 1 6 NA [INTRACHROMOSOMAL[chr11:23.81Mb]] IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA +11:9384847 11:33286413 IPO7--HIPK3 BS_ZD5HN296 ARRIBA frameshift 5 6 high [INTRACHROMOSOMAL[chr11:23.81Mb]],deletion IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA +11:9392320 11:33286413 IPO7--HIPK3 BS_ZD5HN296 ARRIBA frameshift 1 6 high [INTRACHROMOSOMAL[chr11:23.81Mb]],deletion IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA +11:33877791 11:29685382 LMO2--LINC02546 BS_ZD5HN296 ARRIBA other 1 5 medium [INTRACHROMOSOMAL[chr11:4.23Mb]],deletion/5'-5' LMO2 NA LINC02546 NA CosmicCensus, Oncogene NA NA NA NA +7:131443702 7:131506726 MKLN1--PODXL BS_ZD5HN296 STARFUSION in-frame 7 3 NA [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_INVERSION:+:-:[3626]] MKLN1 NA PODXL NA NA NA NA NA NA +7:131443702 7:131506726 MKLN1--PODXL BS_ZD5HN296 ARRIBA in-frame 7 3 high [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_INVERSION:+:-:[3626]],inversion MKLN1 NA PODXL NA NA NA NA NA NA +7:131437997 7:131506726 MKLN1--PODXL BS_ZD5HN296 ARRIBA in-frame 1 1 medium [INTRACHROMOSOMAL[chr7:0.00Mb],LOCAL_INVERSION:+:-:[3626]],inversion MKLN1 NA PODXL NA NA NA NA NA NA +17:21241680 22:28366950 NATD1--TTC28 BS_ZD5HN296 ARRIBA other 3 0 medium [INTERCHROMOSOMAL[chr17--chr22]],translocation/5'-5' NATD1 NA TTC28 NA NA NA NA NA NA +11:19351027 11:9785318 NAV2--SBF2 BS_ZD5HN296 ARRIBA in-frame 8 4 high [INTRACHROMOSOMAL[chr11:9.06Mb]],inversion NAV2 NA SBF2 NA NA NA NA NA NA +12:4669817 12:29512120 NDUFA9--TMTC1 BS_ZD5HN296 ARRIBA frameshift 5 1 high [INTRACHROMOSOMAL[chr12:24.81Mb]],inversion NDUFA9 NA TMTC1 NA NA NA NA NA NA +12:7191700 12:20711386 PEX5--SLCO1C1 BS_ZD5HN296 STARFUSION frameshift 15 13 NA [INTRACHROMOSOMAL[chr12:13.48Mb]] PEX5 NA SLCO1C1 NA NA NA NA NA NA +12:7191700 12:20717132 PEX5--SLCO1C1 BS_ZD5HN296 STARFUSION in-frame 11 13 NA [INTRACHROMOSOMAL[chr12:13.48Mb]] PEX5 NA SLCO1C1 NA NA NA NA NA NA +12:7191700 12:20711386 PEX5--SLCO1C1 BS_ZD5HN296 ARRIBA frameshift 14 12 high [INTRACHROMOSOMAL[chr12:13.48Mb]],deletion PEX5 NA SLCO1C1 NA NA NA NA NA NA +12:7191700 12:20717132 PEX5--SLCO1C1 BS_ZD5HN296 ARRIBA in-frame 11 3 high [INTRACHROMOSOMAL[chr12:13.48Mb]],deletion PEX5 NA SLCO1C1 NA NA NA NA NA NA +12:27682703 12:5358270 PPFIBP1--AC006206.2 BS_ZD5HN296 ARRIBA frameshift 2 0 high [INTRACHROMOSOMAL[chr12:22.14Mb]],duplication PPFIBP1 NA AC006206.2 NA CosmicCensus, Oncogene NA NA NA NA +12:27682703 12:5367803 PPFIBP1--AC006206.2 BS_ZD5HN296 ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr12:22.14Mb]],duplication PPFIBP1 NA AC006206.2 NA CosmicCensus, Oncogene NA NA NA NA +7:103364307 7:103523531 PSMC2--RELN BS_ZD5HN296 ARRIBA frameshift 3 0 medium [INTRACHROMOSOMAL[chr7:0.10Mb]],inversion PSMC2 NA RELN NA NA NA NA NA NA +16:29082041 4:113174416 RRN3P2--ANK2 BS_ZD5HN296 ARRIBA other 5 0 medium [INTERCHROMOSOMAL[chr16--chr4]],translocation/3'-3' RRN3P2 NA ANK2 NA NA NA NA NA NA +22:31496637 22:39415006 SFI1--TAB1 BS_ZD5HN296 ARRIBA other 3 2 high [INTRACHROMOSOMAL[chr22:7.78Mb]],deletion SFI1 NA TAB1 NA NA NA NA NA NA +22:31496637 22:39414880 SFI1--TAB1 BS_ZD5HN296 ARRIBA other 1 2 high [INTRACHROMOSOMAL[chr22:7.78Mb]],deletion SFI1 NA TAB1 NA NA NA NA NA NA +11:35280867 11:23313250 SLC1A2--AC090092.1(110089)/AC100767.2(56866) BS_ZD5HN296 ARRIBA frameshift 132 72 high [],deletion SLC1A2 NA AC090092.1 AC100767.2 NA NA NA NA NA +11:35280867 11:23341431 SLC1A2--AC090092.1(138270)/AC100767.2(28685) BS_ZD5HN296 ARRIBA frameshift 3 0 medium [],deletion SLC1A2 NA AC090092.1 AC100767.2 NA NA NA NA NA +11:35280867 11:6295314 SLC1A2--CCKBR(23187)/AC068733.2(1875) BS_ZD5HN296 ARRIBA frameshift 2 1 medium [],deletion SLC1A2 NA CCKBR AC068733.2 NA NA NA NA NA +2:200389283 2:171893258 SPATS2L--SLC25A12 BS_ZD5HN296 STARFUSION in-frame 6 1 NA [INTRACHROMOSOMAL[chr2:28.31Mb]] SPATS2L NA SLC25A12 NA NA NA NA NA NA +2:200389283 2:171893258 SPATS2L--SLC25A12 BS_ZD5HN296 ARRIBA in-frame 6 1 high [INTRACHROMOSOMAL[chr2:28.31Mb]],inversion SPATS2L NA SLC25A12 NA NA NA NA NA NA +11:8810517 11:35494272 ST5--PAMR1 BS_ZD5HN296 ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr11:26.52Mb]],duplication ST5 NA PAMR1 NA TumorSuppressorGene, Oncogene NA NA NA NA +11:8810517 11:35513477 ST5--PAMR1 BS_ZD5HN296 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:26.52Mb]],duplication ST5 NA PAMR1 NA TumorSuppressorGene, Oncogene NA NA NA NA +11:8810517 11:35528979 ST5--PAMR1 BS_ZD5HN296 ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr11:26.52Mb]],duplication ST5 NA PAMR1 NA TumorSuppressorGene, Oncogene NA NA NA NA +15:92393924 9:35072578 ST8SIA2--VCP BS_ZD5HN296 STARFUSION other 14 0 NA [FA_CancerSupp,INTERCHROMOSOMAL[chr15--chr9]] ST8SIA2 NA VCP NA NA NA NA NA NA +11:6481852 11:33980240 TIMM10B--LMO2(87951)/CAPRIN1(71443) BS_ZD5HN296 ARRIBA frameshift 3 3 high [],inversion TIMM10B NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA +12:26995237 12:5270205 TM7SF3--LINC02443(27054)/AC006206.2(20275) BS_ZD5HN296 ARRIBA frameshift 4 1 medium [],inversion TM7SF3 NA LINC02443 AC006206.2 NA NA NA NA NA +5:73124013 5:54637983 TMEM171--SNX18(91398)/AC016583.1(5574) BS_ZD5HN296 ARRIBA frameshift 2 0 medium [],inversion TMEM171 NA SNX18 AC016583.1 NA NA NA NA NA +11:43396818 11:5841990 TTC17--OR52E6 BS_ZD5HN296 ARRIBA frameshift 2 1 high [INTRACHROMOSOMAL[chr11:37.52Mb]],inversion TTC17 NA OR52E6 NA NA NA NA NA NA +11:43396818 11:5841990 TTC17--TRIM5 BS_ZD5HN296 ARRIBA frameshift 1 1 medium [INTRACHROMOSOMAL[chr11:37.42Mb]],inversion TTC17 NA TRIM5 NA NA NA NA NA NA +11:43391952 11:5667711 TTC17--TRIM5 BS_ZD5HN296 ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr11:37.42Mb]],inversion TTC17 NA TRIM5 NA NA NA NA NA NA +16:28166508 16:31528458 XPO6--AHSP BS_ZD5HN296 STARFUSION frameshift 37 13 NA [INTRACHROMOSOMAL[chr16:3.32Mb]] XPO6 NA AHSP NA NA NA NA NA NA +16:28166508 16:31528458 XPO6--AHSP BS_ZD5HN296 ARRIBA frameshift 37 11 high [INTRACHROMOSOMAL[chr16:3.32Mb]],inversion XPO6 NA AHSP NA NA NA NA NA NA +17:1179667 17:1365058 ABR--YWHAE BS_ZF6BSFNF ARRIBA in-frame 2 0 low [Klijn_CellLines,FA_CancerSupp,ChimerSeq,INTRACHROMOSOMAL[chr17:0.12Mb]],duplication ABR NA YWHAE NA Oncogene CosmicCensus, Oncogene NA NA TCGAFusion +19:29391421 19:29393075 AC011474.1--AC011474.1 BS_ZF6BSFNF ARRIBA other 2 0 low [SELFIE,INTRACHROMOSOMAL[chr19:0.24Mb]],duplication/non-canonical_splicing AC011474.1 NA AC011474.1 NA NA NA NA NA NA +6:69239226 6:69713797 ADGRB3--LMBRD1 BS_ZF6BSFNF ARRIBA in-frame 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr6:0.29Mb]],inversion ADGRB3 NA LMBRD1 NA NA NA NA NA NA +6:69239226 6:69676541 ADGRB3--LMBRD1 BS_ZF6BSFNF ARRIBA frameshift 1 0 low [FA_CancerSupp,INTRACHROMOSOMAL[chr6:0.29Mb]],inversion ADGRB3 NA LMBRD1 NA NA NA NA NA NA +4:113174413 16:29082044 ANK2--AC009093.3 BS_ZF6BSFNF ARRIBA other 6 0 low [INTERCHROMOSOMAL[chr4--chr16]],translocation ANK2 NA AC009093.3 NA NA NA NA NA NA +14:72894057 9:81685896 DPF3--TLE1 BS_ZF6BSFNF ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr14--chr9]],translocation DPF3 NA TLE1 NA TranscriptionFactor NA NA NA NA +3:179451346 3:170708044 GNB4--CLDN11 BS_ZF6BSFNF ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr3:8.54Mb]],inversion GNB4 NA CLDN11 NA NA NA NA NA NA +4:82355304 4:82946474 HNRNPD--LIN54 BS_ZF6BSFNF ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr4:0.54Mb]],duplication HNRNPD NA LIN54 NA Oncogene TranscriptionFactor NA NA NA +7:131107720 7:133630045 LINC-PINT--EXOC4 BS_ZF6BSFNF ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:2.14Mb]],inversion LINC-PINT NA EXOC4 NA TumorSuppressorGene Oncogene NA NA NA +7:130945720 7:133475328 LINC-PINT--EXOC4 BS_ZF6BSFNF ARRIBA other 1 0 low [INTRACHROMOSOMAL[chr7:2.14Mb]],inversion LINC-PINT NA EXOC4 NA TumorSuppressorGene Oncogene NA NA NA +13:35110978 15:20646463 NBEA--AC023310.4(3015)/NBEAP1(11175) BS_ZF6BSFNF ARRIBA frameshift 2 0 medium [],translocation NBEA NA AC023310.4 NBEAP1 CosmicCensus NA NA Oncogene NA +5:9379823 5:84106830 SEMA5A--EDIL3 BS_ZF6BSFNF ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr5:74.39Mb]],duplication SEMA5A NA EDIL3 NA NA NA NA NA NA +20:33438841 1:156404601 SNTA1--C1orf61 BS_ZF6BSFNF ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr20--chr1]],translocation SNTA1 NA C1orf61 NA NA NA NA NA NA +20:21303473 20:21229011 XRN2--KIZ BS_ZF6BSFNF ARRIBA frameshift 2 0 low [INTRACHROMOSOMAL[chr20:0.06Mb],LOCAL_REARRANGEMENT:+:[56682]],duplication XRN2 NA KIZ NA NA Oncogene NA NA NA +20:21303473 20:21205491 XRN2--KIZ BS_ZF6BSFNF ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr20:0.06Mb],LOCAL_REARRANGEMENT:+:[56682]],duplication XRN2 NA KIZ NA NA Oncogene NA NA NA +17:59353526 17:68515394 YPEL2--AC007780.1 BS_ZF6BSFNF ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr17:9.01Mb]],deletion YPEL2 NA AC007780.1 NA NA NA NA NA NA +17:59353526 17:68515394 YPEL2--PRKAR1A BS_ZF6BSFNF ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr17:9.11Mb]],deletion YPEL2 NA PRKAR1A NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA +9:136977692 11:67419487 AL807752.7--CARNS1 BS_ZQ76ZBEX ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr9--chr11]],translocation AL807752.7 NA CARNS1 NA NA NA NA NA NA +1:230660823 1:229258079 COG2--TMEM78(6269)/AL162595.1(202) BS_ZQ76ZBEX ARRIBA frameshift 2 1 high [],duplication COG2 NA TMEM78 AL162595.1 NA NA NA NA NA +9:128393142 9:95086682 MIR219A2--C9orf3 BS_ZQ76ZBEX ARRIBA other 3 0 medium [INTRACHROMOSOMAL[chr9:33.31Mb]],inversion MIR219A2 NA C9orf3 NA NA NA NA NA NA +21:36333718 21:36137825 MORC3--CBR3 BS_ZQ76ZBEX ARRIBA in-frame 1 0 low [INTRACHROMOSOMAL[chr21:0.17Mb]],duplication MORC3 NA CBR3 NA NA NA NA NA NA +21:36320303 21:36137825 MORC3--CBR3 BS_ZQ76ZBEX ARRIBA frameshift 1 0 low [INTRACHROMOSOMAL[chr21:0.17Mb]],duplication MORC3 NA CBR3 NA NA NA NA NA NA +15:41285363 15:41034752 OIP5-AS1--INO80 BS_ZQ76ZBEX ARRIBA other 1 1 medium [INTRACHROMOSOMAL[chr15:0.17Mb]],duplication/5'-5' OIP5-AS1 NA INO80 NA NA NA NA NA NA +17:38747879 17:38762411 PCGF2--PSMB3 BS_ZQ76ZBEX ARRIBA other 3 0 low [INTRACHROMOSOMAL[chr17:0.00Mb],LOCAL_INVERSION:-:+:[2919]],inversion PCGF2 NA PSMB3 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA +9:136977692 11:67419487 PTGDS--CARNS1 BS_ZQ76ZBEX ARRIBA in-frame 2 0 low [INTERCHROMOSOMAL[chr9--chr11]],translocation PTGDS NA CARNS1 NA NA NA NA NA NA +5:181260001 12:110496203 TRIM52--VPS29 BS_ZQ76ZBEX ARRIBA in-frame 2 0 medium [INTERCHROMOSOMAL[chr5--chr12]],translocation TRIM52 NA VPS29 NA NA NA NA NA NA +15:40807866 1:36179513 ZFYVE19--MAP7D1 BS_ZQ76ZBEX ARRIBA in-frame 1 0 low [INTERCHROMOSOMAL[chr15--chr1]],translocation ZFYVE19 NA MAP7D1 NA NA NA NA NA NA +17:16773634 17:60185653 CCDC144A--USP32 BS_ZQKGJD70 ARRIBA in-frame 2 0 low [INTRACHROMOSOMAL[chr17:43.40Mb]],inversion CCDC144A NA USP32 NA NA Oncogene NA NA NA +4:4391591 7:105118022 HGNC:18790--SRPK2 BS_ZQKGJD70 ARRIBA frameshift 2 0 low [INTERCHROMOSOMAL[chr4--chr7]],translocation HGNC:18790 NA SRPK2 NA NA Kinase, Oncogene, Kinase NA NA NA +2:8324542 2:8793987 LINC00299--KIDINS220 BS_ZQKGJD70 STARFUSION other 14 1 NA [INTRACHROMOSOMAL[chr2:0.34Mb]] LINC00299 NA KIDINS220 NA NA NA NA NA NA +2:8324542 2:8793987 LINC00299--KIDINS220 BS_ZQKGJD70 ARRIBA other 14 2 high [INTRACHROMOSOMAL[chr2:0.34Mb]],duplication LINC00299 NA KIDINS220 NA NA NA NA NA NA +7:22219866 2:16097577 RAPGEF5--AC130710.1 BS_ZQKGJD70 ARRIBA frameshift 2 1 high [INTERCHROMOSOMAL[chr7--chr2]],translocation RAPGEF5 NA AC130710.1 NA NA NA NA NA NA +7:22219866 2:16097462 RAPGEF5--AC130710.1 BS_ZQKGJD70 ARRIBA frameshift 1 1 medium [INTERCHROMOSOMAL[chr7--chr2]],translocation RAPGEF5 NA AC130710.1 NA NA NA NA NA NA +7:22219866 2:16085483 RAPGEF5--AC130710.1 BS_ZQKGJD70 ARRIBA frameshift 1 0 low [INTERCHROMOSOMAL[chr7--chr2]],translocation RAPGEF5 NA AC130710.1 NA NA NA NA NA NA +1:145746458 2:16558100 RNF115--FAM49A BS_ZQKGJD70 ARRIBA other 5 1 medium [INTERCHROMOSOMAL[chr1--chr2]],translocation/5'-5' RNF115 NA FAM49A NA NA Oncogene NA NA NA diff --git a/analyses/fusion_filtering/results/pbta-fusion-putative-oncogenic.tsv b/analyses/fusion_filtering/results/pbta-fusion-putative-oncogenic.tsv index 7531c80a2b..350bed4997 100644 --- a/analyses/fusion_filtering/results/pbta-fusion-putative-oncogenic.tsv +++ b/analyses/fusion_filtering/results/pbta-fusion-putative-oncogenic.tsv @@ -1,3315 +1,4354 @@ -Sample FusionName zscore_Gene1A zscore_Gene1B zscore_Gene2A zscore_Gene2B note_expression_Gene1A note_expression_Gene1B note_expression_Gene2A note_expression_Gene2B Fusion_Type Gene1A Gene2A Gene1B Gene2B Gene1A_anno Gene1B_anno Gene2A_anno Gene2B_anno Fusion_anno CalledBy caller.count Kids_First_Participant_ID -BS_07ANYSYQ CFAP43--CFAP43 1.67513566655792 1.67513566655792 NA NA no change no change NA NA frameshift CFAP43 NA CFAP43 NA NA NA NA NA NA ARRIBA 1 PT_S4H6KA09 -BS_07ANYSYQ CHD2--CHD2 1.29914556450049 1.29914556450049 NA NA no change no change NA NA in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_S4H6KA09 -BS_09Z7TC35 SYCP1--SYCP1 19.6796536106104 19.6796536106104 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_YHTK536P -BS_1A6MQ9ZA NF1--ACACB 0.540535682527793 -0.152660331336249 NA NA no change no change NA NA in-frame NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_JSFBMK5V -BS_1AYRM596 SYCP1--SYCP1 61.8991235907429 61.8991235907429 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_BPKVVWVB -BS_1EBQ3T20 CBWD1--GABRG3 -1.37308802076542 1.43124140459464 NA NA no change no change NA NA frameshift CBWD1 NA GABRG3 NA NA NA NA NA NA ARRIBA 1 PT_4347ZBEX -BS_1EBQ3T20 ELOA--IFNLR1 NA 1.69154191456718 NA NA NA no change NA NA frameshift ELOA NA IFNLR1 NA NA NA NA NA NA ARRIBA 1 PT_4347ZBEX -BS_1HQ76V6D GNB1L--NF2 -0.307113258710402 0.096097503423532 NA NA no change no change NA NA in-frame GNB1L NA NF2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_1HQ76V6D NF2--POLR2F 0.096097503423532 -2.77556285705686 NA NA no change differentially expressed NA NA frameshift NF2 NA POLR2F NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_1HQ76V6D RBFOX2--IGLC2 0.808927826290728 2.20294062728113 NA NA no change differentially expressed NA NA frameshift RBFOX2 NA IGLC2 NA NA NA NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_1HQ76V6D AFDN--SMTN NA 0.634174849809215 NA NA NA no change NA NA in-frame AFDN NA SMTN NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_23M72ABG UVRAG--AP003049.2 -0.619880014976044 NA NA NA no change NA NA NA frameshift UVRAG NA AP003049.2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_AQWDQW27 -BS_2A162JH9 PAX3--AC079834.2/AC079834.1 9.26183624232974 NA NA -0.0862444200531154 differentially expressed NA NA no change frameshift PAX3 NA AC079834.2 AC079834.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JNEV57VK -BS_2SFTWNVE SYCP1--SYCP1 19.9131511651988 19.9131511651988 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_BG7GAFK6 -BS_2XD3MNKD KSR2--KSR2 0.362597972736246 0.362597972736246 NA NA no change no change NA NA frameshift KSR2 NA KSR2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_YQWG98Z5 -BS_3NWQXPQV SYCP1--SYCP1 42.5687286480153 42.5687286480153 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_0DWRY9ZX -BS_3X9WMZGJ ABCC9--ABCC9 2.70890297110969 2.70890297110969 NA NA differentially expressed differentially expressed NA NA frameshift ABCC9 NA ABCC9 NA NA NA NA NA NA ARRIBA 1 PT_3VCS1PPF -BS_40MP5BWR NF1--ACACB 1.14501883164291 1.25872867571542 NA NA no change no change NA NA in-frame NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_JSFBMK5V -BS_49FQXT2E PEX5--SLCO1C1 1.17043762299047 0.414802871087638 NA NA no change no change NA NA in-frame PEX5 NA SLCO1C1 NA NA NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E SPATS2L--SLC25A12 0.502265646822512 0.0336983471834196 NA NA no change no change NA NA in-frame SPATS2L NA SLC25A12 NA NA NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E PEX5--SLCO1C1 1.17043762299047 0.414802871087638 NA NA no change no change NA NA frameshift PEX5 NA SLCO1C1 NA NA NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E XPO6--AHSP -0.277008704614788 7.94217406191183 NA NA no change differentially expressed NA NA frameshift XPO6 NA AHSP NA NA NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_4PPHAQXF SEMA5A--MARCH6 5.41908055221033 0.570738448498618 NA NA differentially expressed no change NA NA in-frame SEMA5A NA MARCH6 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_P5HHJJPH -BS_4QW2S1Q8 UBE2R2--AC004870.3/TNS3 0.681485538756286 NA NA 0.0575453622611787 no change NA NA no change frameshift UBE2R2 NA AC004870.3 TNS3 NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 SLC30A9--AC093730.1 0.744410140592888 NA NA NA no change NA NA NA frameshift SLC30A9 NA AC093730.1 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 HIF1AN--AL162274.3/JAKMIP3 3.01673512711964 NA NA -2.75031567035846 differentially expressed NA NA differentially expressed frameshift HIF1AN NA AL162274.3 JAKMIP3 NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 SLC30A9--AC093730.1/TECRL 0.744410140592888 NA NA -0.482914000197048 no change NA NA no change frameshift SLC30A9 NA AC093730.1 TECRL NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 BOD1--AC243725.1 0.862115261436302 NA NA NA no change NA NA NA frameshift BOD1 NA AC243725.1 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 CCAR1--GRID1 0.0999823876854951 0.753606295961801 NA NA no change no change NA NA frameshift CCAR1 NA GRID1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 PTDSS2--SBF2 -1.31181846326075 0.836614320340565 NA NA no change no change NA NA in-frame PTDSS2 NA SBF2 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4W68NV3M SYCP1--SYCP1 28.0341451464025 28.0341451464025 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_D215EQAP -BS_58YXHGAJ NUDT3--CD2AP -0.0956607175975111 1.03553454918396 NA NA no change no change NA NA in-frame NUDT3 NA CD2AP NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_G4N67N0D -BS_58YXHGAJ UBE2J1--ADGRB3 0.700463269825719 -0.102475222702573 NA NA no change no change NA NA frameshift UBE2J1 NA ADGRB3 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_G4N67N0D -BS_58YXHGAJ NUDT3--CD2AP -0.0956607175975111 1.03553454918396 NA NA no change no change NA NA frameshift NUDT3 NA CD2AP NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_G4N67N0D -BS_58YXHGAJ LYRM4--SMAP1 0.443796391548666 0.871863541495761 NA NA no change no change NA NA frameshift LYRM4 NA SMAP1 NA NA Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_G4N67N0D -BS_58YXHGAJ PPARD--SLC17A5 -1.26256202022375 1.36615661769839 NA NA no change no change NA NA frameshift PPARD NA SLC17A5 NA Oncogene, TranscriptionFactor NA NA NA NA STARFUSION, ARRIBA 2 PT_G4N67N0D -BS_58YXHGAJ PPARD--SLC17A5 -1.26256202022375 1.36615661769839 NA NA no change no change NA NA in-frame PPARD NA SLC17A5 NA Oncogene, TranscriptionFactor NA NA NA NA STARFUSION, ARRIBA 2 PT_G4N67N0D -BS_58YXHGAJ BLOC1S5--JARID2 1.91051148778194 -0.331881199756195 NA NA no change no change NA NA frameshift BLOC1S5 NA JARID2 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_G4N67N0D -BS_61E80SD6 SYCP1--SYCP1 20.2578082178762 20.2578082178762 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_39HBKSGG -BS_685DACMS TTYH1--DPRX/RNU6-698P 1.0131999625396 -0.460183734543786 NA NA no change no change NA NA frameshift TTYH1 NA DPRX RNU6-698P Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_7PXN3B4J -BS_68KX6A42 SCRN1--LSM5 -0.37202190674192 3.16650229082635 NA NA no change differentially expressed NA NA in-frame SCRN1 NA LSM5 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 -BS_68KX6A42 JAZF1--MDH2 1.93990729908653 1.62764616036815 NA NA no change no change NA NA frameshift JAZF1 NA MDH2 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 -BS_68KX6A42 AUTS2--RNF216 0.376743638585233 2.55724427904619 NA NA no change differentially expressed NA NA frameshift AUTS2 NA RNF216 NA NA Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 SELENOS--ACSBG1 NA -1.0639682884494 NA NA NA no change NA NA frameshift SELENOS NA ACSBG1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 -BS_68KX6A42 SEMA3C--YWHAG 2.31305404178331 -0.151746799376772 NA NA differentially expressed no change NA NA frameshift SEMA3C NA YWHAG NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 -BS_68KX6A42 PTPN12--WDR60 2.24470614008479 0.592457956338058 NA NA differentially expressed no change NA NA frameshift PTPN12 NA WDR60 NA TumorSuppressorGene NA NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 -BS_68KX6A42 PTPN12--WDR60 2.24470614008479 0.592457956338058 NA NA differentially expressed no change NA NA in-frame PTPN12 NA WDR60 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 AUTS2--RNF216 0.376743638585233 2.55724427904619 NA NA no change differentially expressed NA NA in-frame AUTS2 NA RNF216 NA NA Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 -BS_68KX6A42 DBNL--SLC26A4 2.70198050396378 3.49514897344647 NA NA differentially expressed differentially expressed NA NA frameshift DBNL NA SLC26A4 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 -BS_68KX6A42 DBNL--SLC26A4 2.70198050396378 3.49514897344647 NA NA differentially expressed differentially expressed NA NA in-frame DBNL NA SLC26A4 NA NA NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 SLC26A4--AGK 3.49514897344647 0.909416343914078 NA NA differentially expressed no change NA NA frameshift SLC26A4 NA AGK NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 -BS_6M2053M0 MTMR4--RGS9 0.207944744600952 0.936244834693733 NA NA no change no change NA NA frameshift MTMR4 NA RGS9 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_RE6AXQM1 -BS_6M2053M0 NCAM1--ELMOD1 1.39118454937167 -1.01916869113975 NA NA no change no change NA NA frameshift NCAM1 NA ELMOD1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_RE6AXQM1 -BS_6M2053M0 SARAF--TUSC3 0.285920302772658 0.306615340288004 NA NA no change no change NA NA in-frame SARAF NA TUSC3 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_RE6AXQM1 -BS_6M2053M0 RPS6KA2--C6orf118 -0.489355638245346 1.41733821166399 NA NA no change no change NA NA frameshift RPS6KA2 NA C6orf118 NA TumorSuppressorGene, Kinase NA NA NA NA STARFUSION, ARRIBA 2 PT_RE6AXQM1 -BS_6WP1FHTE MBNL2--RERGL -1.26527339741786 -1.62696998864893 NA NA no change no change NA NA frameshift MBNL2 NA RERGL NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4PJA6KT -BS_7BTZQKYY CHD2--CHD2 0.857255029616391 0.857255029616391 NA NA no change no change NA NA frameshift CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_QZN7FZER -BS_7BTZQKYY ABCC9--ABCC9 6.88613926028842 6.88613926028842 NA NA differentially expressed differentially expressed NA NA frameshift ABCC9 NA ABCC9 NA NA NA NA NA NA ARRIBA 1 PT_QZN7FZER -BS_7FWZ518S SYCP1--SYCP1 37.5330330808122 37.5330330808122 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_SBP79T7F -BS_7G42J2SK PREX2--PREX2 3.73251882529008 3.73251882529008 NA NA differentially expressed differentially expressed NA NA frameshift PREX2 NA PREX2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK USP24--USP24 1.97422458661944 1.97422458661944 NA NA no change no change NA NA frameshift USP24 NA USP24 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK DST--DST -2.61866056788683 -2.61866056788683 NA NA differentially expressed differentially expressed NA NA in-frame DST NA DST NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK SHPRH--SHPRH 2.37870264577081 2.37870264577081 NA NA differentially expressed differentially expressed NA NA frameshift SHPRH NA SHPRH NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK MAP4K5--MAP4K5 0.01508996717745 0.01508996717745 NA NA no change no change NA NA in-frame MAP4K5 NA MAP4K5 NA Kinase Kinase NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK AFDN--AFDN NA NA NA NA NA NA NA NA in-frame AFDN NA AFDN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK VPS13C--VPS13C 1.29519747116373 1.29519747116373 NA NA no change no change NA NA in-frame VPS13C NA VPS13C NA NA NA NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK CAPS2--CAPS2 1.73915974618181 1.73915974618181 NA NA no change no change NA NA frameshift CAPS2 NA CAPS2 NA NA NA NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK CHD2--CHD2 2.09796843712961 2.09796843712961 NA NA differentially expressed differentially expressed NA NA in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK CTAGE5--CTAGE5 2.27612035723694 2.27612035723694 NA NA differentially expressed differentially expressed NA NA in-frame CTAGE5 NA CTAGE5 NA NA NA NA NA NA ARRIBA 1 PT_BWN251DF -BS_8ZD6J47V ELOA--IFNLR1 NA 1.93116731485336 NA NA NA no change NA NA frameshift ELOA NA IFNLR1 NA NA NA NA NA NA ARRIBA 1 PT_4347ZBEX -BS_8ZD6J47V CBWD1--GABRG3 -2.68440891260863 1.91998269768874 NA NA differentially expressed no change NA NA frameshift CBWD1 NA GABRG3 NA NA NA NA NA NA ARRIBA 1 PT_4347ZBEX -BS_8ZY4GST0 ST7--MET 0.603979128760003 2.73557462438209 NA NA no change differentially expressed NA NA in-frame ST7 NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion STARFUSION, ARRIBA 2 PT_V1HNAC2Q -BS_8ZY4GST0 CARS--BRSK2 -0.268689573886028 -0.407673324712974 NA NA no change no change NA NA in-frame CARS NA BRSK2 NA CosmicCensus, Oncogene Kinase, Kinase NA NA NA STARFUSION, ARRIBA 2 PT_V1HNAC2Q -BS_8ZY4GST0 HIRA--IL17RA 0.15789388358148 3.16637098320825 NA NA no change differentially expressed NA NA in-frame HIRA NA IL17RA NA TumorSuppressorGene NA NA NA NA STARFUSION, ARRIBA 2 PT_V1HNAC2Q -BS_8ZY4GST0 C22orf39--IL17RA 0.391704350258847 3.16637098320825 NA NA no change differentially expressed NA NA in-frame C22orf39 NA IL17RA NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_V1HNAC2Q -BS_8ZY4GST0 HIRA--IL17RA 0.15789388358148 3.16637098320825 NA NA no change differentially expressed NA NA frameshift HIRA NA IL17RA NA TumorSuppressorGene NA NA NA NA STARFUSION, ARRIBA 2 PT_V1HNAC2Q -BS_91VYM11A ASB7--SEPT10P1 3.66479903116433 49.3934218013524 NA NA differentially expressed differentially expressed NA NA frameshift ASB7 NA SEPT10P1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_91VYM11A TARSL2--WFS1 2.99090260133463 1.9730468469766 NA NA differentially expressed no change NA NA in-frame TARSL2 NA WFS1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_9M5XJ10G SYCP1--SYCP1 35.5563328588825 35.5563328588825 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_VH6S71AC -BS_BMMY0H73 COPA--GPATCH4 1.98923247983288 1.46017369525855 NA NA no change no change NA NA frameshift COPA NA GPATCH4 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 -BS_BMMY0H73 COPA--GPATCH4 1.98923247983288 1.46017369525855 NA NA no change no change NA NA in-frame COPA NA GPATCH4 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 -BS_BMMY0H73 KLHL15--UGT1A7 1.98317705248468 75.6063233455134 NA NA no change differentially expressed NA NA in-frame KLHL15 NA UGT1A7 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 -BS_BMMY0H73 KLHL15--UGT1A3 1.98317705248468 107.928158702063 NA NA no change differentially expressed NA NA in-frame KLHL15 NA UGT1A3 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 -BS_BMMY0H73 TDRP--DEPTOR -0.21249141580337 0.152362537453076 NA NA no change no change NA NA frameshift TDRP NA DEPTOR NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 -BS_BMMY0H73 KLHL15--UGT1A1 1.98317705248468 24.1952547747033 NA NA no change differentially expressed NA NA in-frame KLHL15 NA UGT1A1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 -BS_BMMY0H73 KLHL15--UGT1A10 1.98317705248468 -0.166260111199399 NA NA no change no change NA NA in-frame KLHL15 NA UGT1A10 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 -BS_BMMY0H73 TAPBP--GPX6 1.6730958737304 61.8422125510704 NA NA no change differentially expressed NA NA frameshift TAPBP NA GPX6 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 -BS_BMMY0H73 KLHL15--UGT1A4 1.98317705248468 18.5395216096894 NA NA no change differentially expressed NA NA in-frame KLHL15 NA UGT1A4 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 -BS_BMMY0H73 KLHL15--UGT1A6 1.98317705248468 20.9062938307699 NA NA no change differentially expressed NA NA in-frame KLHL15 NA UGT1A6 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 -BS_BMMY0H73 KLHL15--UGT1A5 1.98317705248468 NA NA NA no change NA NA NA in-frame KLHL15 NA UGT1A5 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 -BS_BMMY0H73 DDR2--EFNA1 4.00519703160775 2.36134771610556 NA NA differentially expressed differentially expressed NA NA frameshift DDR2 NA EFNA1 NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 -BS_BMMY0H73 KLHL15--UGT1A9 1.98317705248468 -0.124280642387509 NA NA no change no change NA NA in-frame KLHL15 NA UGT1A9 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 -BS_BMMY0H73 KLHL15--UGT1A8 1.98317705248468 108.430506465923 NA NA no change differentially expressed NA NA in-frame KLHL15 NA UGT1A8 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 -BS_BWBDH9GM PAX3--AC079834.2/AC079834.1 9.07174413870486 NA NA -0.0862444200531154 differentially expressed NA NA no change frameshift PAX3 NA AC079834.2 AC079834.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JNEV57VK -BS_CXVJK2FY PREX2--PREX2 4.14921792207501 4.14921792207501 NA NA differentially expressed differentially expressed NA NA frameshift PREX2 NA PREX2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_CYVVA9AB -BS_CXVJK2FY AFDN--AFDN NA NA NA NA NA NA NA NA in-frame AFDN NA AFDN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CYVVA9AB -BS_CXVJK2FY TBCK--TBCK 1.26675779030146 1.26675779030146 NA NA no change no change NA NA frameshift TBCK NA TBCK NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_CYVVA9AB -BS_CXVJK2FY CHD2--CHD2 1.68418374332316 1.68418374332316 NA NA no change no change NA NA in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CYVVA9AB -BS_CXVJK2FY RALGAPB--RALGAPB 1.44012354551712 1.44012354551712 NA NA no change no change NA NA in-frame RALGAPB NA RALGAPB NA NA NA NA NA NA ARRIBA 1 PT_CYVVA9AB -BS_CXVJK2FY COG6--COG6 3.24540697561737 3.24540697561737 NA NA differentially expressed differentially expressed NA NA frameshift COG6 NA COG6 NA NA NA NA NA NA ARRIBA 1 PT_CYVVA9AB -BS_CXVJK2FY USP24--USP24 0.989143659698752 0.989143659698752 NA NA no change no change NA NA frameshift USP24 NA USP24 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CYVVA9AB -BS_CXVJK2FY MAP4K5--MAP4K5 -0.192175669447443 -0.192175669447443 NA NA no change no change NA NA frameshift MAP4K5 NA MAP4K5 NA Kinase Kinase NA NA NA ARRIBA 1 PT_CYVVA9AB -BS_CZ3ER8DY CHD2--CHD2 1.06704761726604 1.06704761726604 NA NA no change no change NA NA in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_ECMZCNTF -BS_CZ3NA7KV USP24--USP24 1.31473291082289 1.31473291082289 NA NA no change no change NA NA frameshift USP24 NA USP24 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_B5K3A4F4 -BS_CZ3NA7KV CHD2--CHD2 1.44981340657417 1.44981340657417 NA NA no change no change NA NA in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_B5K3A4F4 -BS_CZ3NA7KV CAPS2--CAPS2 1.19395940166996 1.19395940166996 NA NA no change no change NA NA frameshift CAPS2 NA CAPS2 NA NA NA NA NA NA ARRIBA 1 PT_B5K3A4F4 -BS_CZ3NA7KV DNAH11--DNAH11 2.82506868835799 2.82506868835799 NA NA differentially expressed differentially expressed NA NA frameshift DNAH11 NA DNAH11 NA NA NA NA NA NA ARRIBA 1 PT_B5K3A4F4 -BS_CZ3NA7KV TBCK--TBCK 1.54832536694166 1.54832536694166 NA NA no change no change NA NA frameshift TBCK NA TBCK NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_B5K3A4F4 -BS_D29RPBSZ PAX3--AC079834.2/AC079834.1 8.34827712293935 NA NA 16.6583405658187 differentially expressed NA NA differentially expressed frameshift PAX3 NA AC079834.2 AC079834.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JNEV57VK -BS_D9GEXXHX UVRAG--AP003049.2 -1.00788196389433 NA NA NA no change NA NA NA frameshift UVRAG NA AP003049.2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_AQWDQW27 -BS_DBDXCXT5 NR6A1--DENND1A 3.75312535179583 0.584506360677543 NA NA differentially expressed no change NA NA frameshift NR6A1 NA DENND1A NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_HFQNKP5X -BS_DRY58DTF MBNL2--RERGL -1.73425428439141 -1.96650168659314 NA NA no change no change NA NA frameshift MBNL2 NA RERGL NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4PJA6KT -BS_E3BAT4C1 SYCP1--SYCP1 44.9530406283042 44.9530406283042 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_F3S9PB94 -BS_E60JZ9Z3 MBNL2--RERGL -1.70418044145985 -2.03386279972777 NA NA no change differentially expressed NA NA frameshift MBNL2 NA RERGL NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4PJA6KT -BS_EJ9JKM1C NR6A1--DENND1A 3.20913830233398 0.691264920917666 NA NA differentially expressed no change NA NA frameshift NR6A1 NA DENND1A NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_HFQNKP5X -BS_EJ9JKM1C ADCY9--CA5B 3.95135554054518 1.37181065631959 NA NA differentially expressed no change NA NA frameshift ADCY9 NA CA5B NA NA NA NA NA NA ARRIBA 1 PT_HFQNKP5X -BS_EK5PCKY0 SHPRH--SHPRH 2.2979693609109 2.2979693609109 NA NA differentially expressed differentially expressed NA NA frameshift SHPRH NA SHPRH NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_EK5PCKY0 FREM1--FREM1 1.64385143216226 1.64385143216226 NA NA no change no change NA NA frameshift FREM1 NA FREM1 NA NA NA NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_EK5PCKY0 CAPS2--CAPS2 2.21933178123026 2.21933178123026 NA NA differentially expressed differentially expressed NA NA frameshift CAPS2 NA CAPS2 NA NA NA NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_EK5PCKY0 CHD2--CHD2 1.75479962412849 1.75479962412849 NA NA no change no change NA NA in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_EK5PCKY0 DNAH11--DNAH11 2.49300066343714 2.49300066343714 NA NA differentially expressed differentially expressed NA NA in-frame DNAH11 NA DNAH11 NA NA NA NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_EK5PCKY0 COG6--COG6 0.980323704385028 0.980323704385028 NA NA no change no change NA NA in-frame COG6 NA COG6 NA NA NA NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_EK5PCKY0 TBCK--TBCK 1.63563247189256 1.63563247189256 NA NA no change no change NA NA frameshift TBCK NA TBCK NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_EK5PCKY0 DST--DST -1.61822841127413 -1.61822841127413 NA NA no change no change NA NA in-frame DST NA DST NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_EK5PCKY0 USP24--USP24 0.299438718458723 0.299438718458723 NA NA no change no change NA NA frameshift USP24 NA USP24 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_EK5PCKY0 VPS13C--VPS13C 0.427740386299775 0.427740386299775 NA NA no change no change NA NA in-frame VPS13C NA VPS13C NA NA NA NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_F0JB4EAK CINP--TDRD9 -0.39181156711301 1.07218872322925 NA NA no change no change NA NA in-frame CINP NA TDRD9 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_KBFM551M -BS_FCAKKZ20 RTFDC1--MFSD14B -1.00217742274922 NA NA NA no change NA NA NA in-frame RTFDC1 NA MFSD14B NA NA NA NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_FCAKKZ20 VIPR2--VIPR2/PIP5K1P2 0.668597444984296 0.668597444984296 NA -0.101392091099978 no change no change NA no change frameshift VIPR2 NA VIPR2 PIP5K1P2 NA NA NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_FCAKKZ20 MFSD14B--RTFDC1 NA -1.00217742274922 NA NA NA no change NA NA in-frame MFSD14B NA RTFDC1 NA NA NA NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_FCAKKZ20 STX8--CRLF3 -0.825681646134818 2.68074607519631 NA NA no change differentially expressed NA NA frameshift STX8 NA CRLF3 NA NA NA NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_G63HYD6N RALGAPB--RALGAPB 1.3328035913468 1.3328035913468 NA NA no change no change NA NA in-frame RALGAPB NA RALGAPB NA NA NA NA NA NA ARRIBA 1 PT_PKP1250P -BS_G63HYD6N CHD2--CHD2 0.603943237967545 0.603943237967545 NA NA no change no change NA NA in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PKP1250P -BS_G63HYD6N COG6--COG6 2.55050804854134 2.55050804854134 NA NA differentially expressed differentially expressed NA NA in-frame COG6 NA COG6 NA NA NA NA NA NA ARRIBA 1 PT_PKP1250P -BS_G63HYD6N SHPRH--SHPRH 2.35559374381441 2.35559374381441 NA NA differentially expressed differentially expressed NA NA frameshift SHPRH NA SHPRH NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_PKP1250P -BS_G63HYD6N CTAGE5--CTAGE5 0.983776806135855 0.983776806135855 NA NA no change no change NA NA in-frame CTAGE5 NA CTAGE5 NA NA NA NA NA NA ARRIBA 1 PT_PKP1250P -BS_G63HYD6N VPS13C--VPS13C 0.986852872117096 0.986852872117096 NA NA no change no change NA NA in-frame VPS13C NA VPS13C NA NA NA NA NA NA ARRIBA 1 PT_PKP1250P -BS_G63HYD6N FREM1--FREM1 1.35929279625511 1.35929279625511 NA NA no change no change NA NA in-frame FREM1 NA FREM1 NA NA NA NA NA NA ARRIBA 1 PT_PKP1250P -BS_G63HYD6N AFDN--AFDN NA NA NA NA NA NA NA NA in-frame AFDN NA AFDN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PKP1250P -BS_G63HYD6N DST--DST -3.77116682185933 -3.77116682185933 NA NA differentially expressed differentially expressed NA NA in-frame DST NA DST NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_PKP1250P -BS_GFM6EA61 NR6A1--DENND1A 1.18415841997133 -0.0627670024673717 NA NA no change no change NA NA frameshift NR6A1 NA DENND1A NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_HFQNKP5X -BS_GFM6EA61 ADCY9--CA5B 2.84112854356969 2.29428786734387 NA NA differentially expressed differentially expressed NA NA frameshift ADCY9 NA CA5B NA NA NA NA NA NA ARRIBA 1 PT_HFQNKP5X -BS_GWSJ4Z9H GOLGA4--DCAF1 1.1303183947706 NA NA NA no change NA NA NA in-frame GOLGA4 NA DCAF1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_9GKVQ9QS -BS_GWSJ4Z9H ADARB2--MAPK1 1.22790438169205 3.64296751900669 NA NA no change differentially expressed NA NA frameshift ADARB2 NA MAPK1 NA Oncogene CosmicCensus, Oncogene, Kinase NA NA NA STARFUSION, ARRIBA 2 PT_9GKVQ9QS -BS_H0QWRJE2 TARSL2--WFS1 3.05182618195255 2.34231821284739 NA NA differentially expressed differentially expressed NA NA frameshift TARSL2 NA WFS1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_H0QWRJE2 TARSL2--WFS1 3.05182618195255 2.34231821284739 NA NA differentially expressed differentially expressed NA NA in-frame TARSL2 NA WFS1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_H0QWRJE2 ASB7--SEPT10P1 3.4771612722488 55.9489797085607 NA NA differentially expressed differentially expressed NA NA frameshift ASB7 NA SEPT10P1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_HD4EJYE3 VIPR2--VIPR2/PIP5K1P2 3.50612509430765 3.50612509430765 NA 12.6093656490224 differentially expressed differentially expressed NA differentially expressed frameshift VIPR2 NA VIPR2 PIP5K1P2 NA NA NA NA NA ARRIBA 1 PT_EZS4SRH6 -BS_HF3RNN2T SYCP1--SYCP1 41.6404622007511 41.6404622007511 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_DFXQFYPV -BS_HHPA8NJ2 SYCP1--SYCP1 26.2502764394737 26.2502764394737 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_QW5VW2PY -BS_HKZENFDA SYCP1--SYCP1 48.7212821197089 48.7212821197089 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_DESHZ91V -BS_J8G4SH4Z SYCP1--SYCP1 26.4529737273257 26.4529737273257 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_P4ZEFY19 -BS_JB43XBCQ AUTS2--CARD11 -0.130506696723083 4.9228092512151 NA NA no change differentially expressed NA NA in-frame AUTS2 NA CARD11 NA NA CosmicCensus, Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_1E3E6GMF -BS_JGA9BP3A NF2--POLR2F -0.0277482287379935 -0.956777218651411 NA NA no change no change NA NA frameshift NF2 NA POLR2F NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_WE1CHTWK -BS_JGA9BP3A ZNF552--MLC1 2.95491329967343 -0.994078381366805 NA NA differentially expressed no change NA NA frameshift ZNF552 NA MLC1 NA TranscriptionFactor NA NA NA NA STARFUSION, ARRIBA 2 PT_WE1CHTWK -BS_JGA9BP3A RBFOX2--IGLC2 0.476311105893857 1.77653459048933 NA NA no change no change NA NA frameshift RBFOX2 NA IGLC2 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_WE1CHTWK -BS_JGA9BP3A GNB1L--NF2 0.66615436674015 -0.0277482287379935 NA NA no change no change NA NA in-frame GNB1L NA NF2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_WE1CHTWK -BS_JGA9BP3A AFDN--SMTN NA 1.40194227388443 NA NA NA no change NA NA in-frame AFDN NA SMTN NA CosmicCensus, Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_WE1CHTWK -BS_JXNZYGCR KSR2--KSR2 1.63236745580557 1.63236745580557 NA NA no change no change NA NA frameshift KSR2 NA KSR2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_3A87PCQK -BS_K74PZET7 SYCP1--SYCP1 48.1636552569426 48.1636552569426 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_ZG4J0EK0 -BS_KBEX4RT2 DDHD1--WWC1 0.573430442337945 0.205993556221446 NA NA no change no change NA NA in-frame DDHD1 NA WWC1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_84Q11Z5X -BS_KBEX4RT2 DDHD1--WWC1 0.573430442337945 0.205993556221446 NA NA no change no change NA NA frameshift DDHD1 NA WWC1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_84Q11Z5X -BS_KBEX4RT2 ERO1A--RNF180 NA 1.40199478678293 NA NA NA no change NA NA frameshift ERO1A NA RNF180 NA NA TumorSuppressorGene NA NA NA STARFUSION, ARRIBA 2 PT_84Q11Z5X -BS_KR4MP5ET UVRAG--AP003049.2 -0.376373330706957 NA NA NA no change NA NA NA frameshift UVRAG NA AP003049.2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_AQWDQW27 -BS_M4TTKPNR C5orf42--C5orf42 -0.203180101508774 -0.203180101508774 NA NA no change no change NA NA in-frame C5orf42 NA C5orf42 NA NA NA NA NA NA ARRIBA 1 PT_YKVK5HTK -BS_M8EA6R2A CBWD1--GABRG3 -1.8350165773512 1.97979534561876 NA NA no change no change NA NA frameshift CBWD1 NA GABRG3 NA NA NA NA NA NA ARRIBA 1 PT_4347ZBEX -BS_M8EA6R2A ELOA--IFNLR1 NA 2.29190600149603 NA NA NA differentially expressed NA NA frameshift ELOA NA IFNLR1 NA NA NA NA NA NA ARRIBA 1 PT_4347ZBEX -BS_MT15SGJN FNBP4--ASRGL1 -1.55030169535296 -3.51279612222008 NA NA no change differentially expressed NA NA in-frame FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA ARRIBA 1 PT_99S5BPE3 -BS_MT15SGJN CHD2--CHD2 0.594229888202575 0.594229888202575 NA NA no change no change NA NA in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_99S5BPE3 -BS_MT15SGJN FNBP4--ASRGL1 -1.55030169535296 -3.51279612222008 NA NA no change differentially expressed NA NA frameshift FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA ARRIBA 1 PT_99S5BPE3 -BS_MX23ZY0Y SLC30A9--AC093730.1 1.20234746339972 NA NA NA no change NA NA NA frameshift SLC30A9 NA AC093730.1 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_MX23ZY0Y CCAR1--GRID1 1.37454799915113 0.794956898912534 NA NA no change no change NA NA frameshift CCAR1 NA GRID1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_MX23ZY0Y UBE2R2--AC004870.3/TNS3 1.20259195943778 NA NA -0.361592708980693 no change NA NA no change frameshift UBE2R2 NA AC004870.3 TNS3 NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_MX23ZY0Y HIF1AN--AL162274.3/JAKMIP3 3.10778168758454 NA NA -2.75031567035846 differentially expressed NA NA differentially expressed frameshift HIF1AN NA AL162274.3 JAKMIP3 NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_MX23ZY0Y PTDSS2--SBF2 -0.380399654903859 1.14670289810466 NA NA no change no change NA NA in-frame PTDSS2 NA SBF2 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_MX23ZY0Y BOD1--AC243725.1 1.36996298542865 NA NA NA no change NA NA NA frameshift BOD1 NA AC243725.1 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_MX23ZY0Y SLC30A9--AC093730.1/TECRL 1.20234746339972 NA NA -0.482914000197048 no change NA NA no change frameshift SLC30A9 NA AC093730.1 TECRL NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_N6N147BY TTYH1--DPRX/RNU6-698P -0.0485854080728933 -0.460183734543786 NA NA no change no change NA NA frameshift TTYH1 NA DPRX RNU6-698P Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_X648RVMK -BS_N8J1DP02 FREM1--FREM1 2.2174594036443 2.2174594036443 NA NA differentially expressed differentially expressed NA NA frameshift FREM1 NA FREM1 NA NA NA NA NA NA ARRIBA 1 PT_VE0Q731Y -BS_NB42PWZN FNBP4--ASRGL1 0.920556107585079 -1.26418780333495 NA NA no change no change NA NA frameshift FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA ARRIBA 1 PT_99S5BPE3 -BS_NB42PWZN FNBP4--ASRGL1 0.920556107585079 -1.26418780333495 NA NA no change no change NA NA in-frame FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA ARRIBA 1 PT_99S5BPE3 -BS_NGHK9RZP COG6--COG6 2.32584743522197 2.32584743522197 NA NA differentially expressed differentially expressed NA NA frameshift COG6 NA COG6 NA NA NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP CTAGE5--CTAGE5 1.35762033160175 1.35762033160175 NA NA no change no change NA NA in-frame CTAGE5 NA CTAGE5 NA NA NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP USP24--USP24 1.19277232022055 1.19277232022055 NA NA no change no change NA NA frameshift USP24 NA USP24 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP AFDN--AFDN NA NA NA NA NA NA NA NA frameshift AFDN NA AFDN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP CFAP43--CFAP43 3.37750017041289 3.37750017041289 NA NA differentially expressed differentially expressed NA NA frameshift CFAP43 NA CFAP43 NA NA NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP RALGAPB--RALGAPB 1.17858404519677 1.17858404519677 NA NA no change no change NA NA in-frame RALGAPB NA RALGAPB NA NA NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP MAP4K5--MAP4K5 0.379361336226921 0.379361336226921 NA NA no change no change NA NA frameshift MAP4K5 NA MAP4K5 NA Kinase Kinase NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP FREM1--FREM1 0.625734487368562 0.625734487368562 NA NA no change no change NA NA frameshift FREM1 NA FREM1 NA NA NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP SHPRH--SHPRH 2.06746393576103 2.06746393576103 NA NA differentially expressed differentially expressed NA NA frameshift SHPRH NA SHPRH NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP CHD2--CHD2 0.94898993041925 0.94898993041925 NA NA no change no change NA NA in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP DNAH11--DNAH11 3.85468648684327 3.85468648684327 NA NA differentially expressed differentially expressed NA NA in-frame DNAH11 NA DNAH11 NA NA NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP CAPS2--CAPS2 1.87798632170627 1.87798632170627 NA NA no change no change NA NA frameshift CAPS2 NA CAPS2 NA NA NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP DST--DST -1.1747757374861 -1.1747757374861 NA NA no change no change NA NA in-frame DST NA DST NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGSG2KB6 GRIK3--WIPI2 3.18275679356866 0.167265095211916 NA NA differentially expressed no change NA NA frameshift GRIK3 NA WIPI2 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_KTRJ8TFY -BS_NGSG2KB6 GRIK3--WIPI2 3.18275679356866 0.167265095211916 NA NA differentially expressed no change NA NA in-frame GRIK3 NA WIPI2 NA NA NA NA NA NA ARRIBA 1 PT_KTRJ8TFY -BS_NKRYMHEP SYCP1--SYCP1 59.0657880259657 59.0657880259657 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_RT1J9P8J -BS_NNPEC7W1 ARHGEF28--AC143336.1/MAP1B 1.71118309909046 NA NA 2.5149485616659 no change NA NA differentially expressed frameshift ARHGEF28 NA AC143336.1 MAP1B NA NA NA NA NA ARRIBA 1 PT_59D00MBQ -BS_NNPEC7W1 SOD2--RAET1E-AS1 1.22917931295258 4.14619741676311 NA NA no change differentially expressed NA NA frameshift SOD2 NA RAET1E-AS1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_59D00MBQ -BS_NT9NZYFD KSR2--KSR2 0.801071478569337 0.801071478569337 NA NA no change no change NA NA frameshift KSR2 NA KSR2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_FC0EF5ZT -BS_NZ71XCG3 SYCP1--SYCP1 33.7159601941391 33.7159601941391 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_7FQ6VECA -BS_P0QF87WC SPEG--SNORD2/MIR3924 1.17485429075605 NA NA NA no change NA NA NA frameshift SPEG NA SNORD2 MIR3924 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_P0QF87WC CRTAC1--IFFO2/AL137127.1 -0.413844030419871 1.93381783150442 NA NA no change no change NA NA frameshift CRTAC1 NA IFFO2 AL137127.1 NA NA NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_P0QF87WC GPM6A--AC107214.2/RWDD4 -1.42917675367277 NA NA 1.13665525292613 no change NA NA no change frameshift GPM6A NA AC107214.2 RWDD4 NA NA NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_P9JP6JFA SLC30A9--AC093730.1 1.21767417067841 NA NA NA no change NA NA NA frameshift SLC30A9 NA AC093730.1 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_P9JP6JFA HIF1AN--AL162274.3/JAKMIP3 2.89624793395999 NA NA -3.22284420312624 differentially expressed NA NA differentially expressed frameshift HIF1AN NA AL162274.3 JAKMIP3 NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_P9JP6JFA UBE2R2--AC004870.3/TNS3 0.246531463004019 NA NA 2.08215067666704 no change NA NA differentially expressed frameshift UBE2R2 NA AC004870.3 TNS3 NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_P9JP6JFA PTDSS2--SBF2 -1.04975428387963 0.0229166050756886 NA NA no change no change NA NA in-frame PTDSS2 NA SBF2 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_P9JP6JFA BOD1--AC243725.1 2.04288257151952 NA NA NA differentially expressed NA NA NA frameshift BOD1 NA AC243725.1 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_P9JP6JFA CCAR1--GRID1 -0.0675025812191853 -2.80722627977232 NA NA no change differentially expressed NA NA frameshift CCAR1 NA GRID1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_P9JP6JFA SLC30A9--AC093730.1/TECRL 1.21767417067841 NA NA -0.482914000197048 no change NA NA no change frameshift SLC30A9 NA AC093730.1 TECRL NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_PS0P3QJ3 KIF21A--ROS1 -0.0801314741396671 3.0075970163929 NA NA no change differentially expressed NA NA in-frame KIF21A NA ROS1 NA NA CosmicCensus, Oncogene, Kinase NA NA NA STARFUSION, ARRIBA 2 PT_6D9C46GC -BS_PXCPK5XS CD83--STMND1 0.349291502116864 4.30054314882629 NA NA no change differentially expressed NA NA in-frame CD83 NA STMND1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_1B1Z7BRQ -BS_PXCPK5XS SH3RF1--NEK1 2.49326085213374 1.87095319180959 NA NA differentially expressed no change NA NA frameshift SH3RF1 NA NEK1 NA NA Kinase, Kinase NA NA TCGAFusion STARFUSION, ARRIBA 2 PT_1B1Z7BRQ -BS_QKT3TJVK GALNT8--ERBB3 1.0106027627464 -0.122551312676188 NA NA no change no change NA NA frameshift GALNT8 NA ERBB3 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA STARFUSION, ARRIBA 2 PT_8VRZRZ7R -BS_QKT3TJVK DENND5B--KRAS 5.30735164399111 6.8053261593639 NA NA differentially expressed differentially expressed NA NA in-frame DENND5B NA KRAS NA NA CosmicCensus, Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_8VRZRZ7R -BS_QKT3TJVK SLC16A7--KNTC1 5.05618421686932 7.89304541147446 NA NA differentially expressed differentially expressed NA NA frameshift SLC16A7 NA KNTC1 NA NA NA NA NA NA ARRIBA 1 PT_8VRZRZ7R -BS_QKT3TJVK SLC16A7--KNTC1 5.05618421686932 7.89304541147446 NA NA differentially expressed differentially expressed NA NA in-frame SLC16A7 NA KNTC1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_8VRZRZ7R -BS_QWNBZ9RJ TTYH1--DPRX/RNU6-698P 0.223060982246283 -0.260931367825278 NA NA no change no change NA NA frameshift TTYH1 NA DPRX RNU6-698P Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_00G007DM -BS_R7NTZR4C MPRIP--DRG2 -0.207218068451268 2.75769531498159 NA NA no change differentially expressed NA NA in-frame MPRIP NA DRG2 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_0MXPTTM3 -BS_S1KK7XRH C5orf42--C5orf42 0.736740762557277 0.736740762557277 NA NA no change no change NA NA frameshift C5orf42 NA C5orf42 NA NA NA NA NA NA ARRIBA 1 PT_YJBPEF4V -BS_S1M423AB SYCP1--SYCP1 65.0475244028002 65.0475244028002 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_BRTVGGRK -BS_S6Q7NKA3 VIPR2--VIPR2/PIP5K1P2 0.637504199678337 0.637504199678337 NA 1.95810122888261 no change no change NA no change frameshift VIPR2 NA VIPR2 PIP5K1P2 NA NA NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_S6Q7NKA3 STX8--CRLF3 -0.32138065711289 1.78830043181558 NA NA no change no change NA NA frameshift STX8 NA CRLF3 NA NA NA NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_S6Q7NKA3 MFSD14B--RTFDC1 NA -0.0776299285342888 NA NA NA no change NA NA in-frame MFSD14B NA RTFDC1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_9S6WMQ92 -BS_S6Q7NKA3 RTFDC1--MFSD14B -0.0776299285342888 NA NA NA no change NA NA NA in-frame RTFDC1 NA MFSD14B NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_9S6WMQ92 -BS_SAA624A4 CFAP43--CFAP43 1.8318884000114 1.8318884000114 NA NA no change no change NA NA in-frame CFAP43 NA CFAP43 NA NA NA NA NA NA ARRIBA 1 PT_EG7PH32E -BS_SDZY6RZ3 C5orf42--C5orf42 0.719585576798057 0.719585576798057 NA NA no change no change NA NA in-frame C5orf42 NA C5orf42 NA NA NA NA NA NA ARRIBA 1 PT_5GQ76YZJ -BS_SNVM7CZT BCL11A--ALK 0.664375740604739 7.2265596356457 NA NA no change differentially expressed NA NA in-frame BCL11A NA ALK NA CosmicCensus, Oncogene, TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA STARFUSION, ARRIBA 2 PT_H2HT2WQX -BS_T3DGY9J9 NF1--ACACB -0.542347495671915 -0.648405220463997 NA NA no change no change NA NA in-frame NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_JSFBMK5V -BS_TE0GVDNG SYCP1--SYCP1 36.1066331114738 36.1066331114738 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_2FK75B27 -BS_TJTEF70D ASB7--SEPT10P1 3.04129812327805 49.612369766886 NA NA differentially expressed differentially expressed NA NA frameshift ASB7 NA SEPT10P1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_TJTEF70D TARSL2--WFS1 2.14188055572536 1.20738126614417 NA NA differentially expressed no change NA NA in-frame TARSL2 NA WFS1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_TJTEF70D TARSL2--WFS1 2.14188055572536 1.20738126614417 NA NA differentially expressed no change NA NA frameshift TARSL2 NA WFS1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_TK84K675 TARSL2--WFS1 2.29308054697854 1.26661758356245 NA NA differentially expressed no change NA NA in-frame TARSL2 NA WFS1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_TK84K675 TARSL2--WFS1 2.29308054697854 1.26661758356245 NA NA differentially expressed no change NA NA frameshift TARSL2 NA WFS1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_TM9MH0RP ARHGEF28--AC143336.1/MAP1B 0.368258050014042 NA NA 3.38426333613006 no change NA NA differentially expressed frameshift ARHGEF28 NA AC143336.1 MAP1B NA NA NA NA NA ARRIBA 1 PT_59D00MBQ -BS_TM9MH0RP SOD2--RAET1E-AS1 2.22097531915907 2.94630120766246 NA NA differentially expressed differentially expressed NA NA frameshift SOD2 NA RAET1E-AS1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_59D00MBQ -BS_TW8DQH8J STX8--CRLF3 -0.652951008533623 2.65720728256629 NA NA no change differentially expressed NA NA frameshift STX8 NA CRLF3 NA NA NA NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_V72H4RQS SYCP1--SYCP1 33.2524864585232 33.2524864585232 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_KN25EYMG -BS_VF5XWFXD PAX3--AC079834.2/AC079834.1 7.88269203621753 NA NA -0.0862444200531154 differentially expressed NA NA no change frameshift PAX3 NA AC079834.2 AC079834.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JNEV57VK -BS_VMEX27TN SYCP1--SYCP1 44.9674411569054 44.9674411569054 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_5AF1501D -BS_VVFBW0YH SYCP1--SYCP1 34.9635629378621 34.9635629378621 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_7QKGGMKV -BS_W1385R8Y LIPA--RGS2 -0.612662117450323 0.32732333843925 NA NA no change no change NA NA in-frame LIPA NA RGS2 NA NA Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_Y585X1BS -BS_W1385R8Y MAD1L1--PHF2 2.66168133149491 1.79259891749038 NA NA differentially expressed no change NA NA in-frame MAD1L1 NA PHF2 NA TumorSuppressorGene, Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_Y585X1BS -BS_W4H1D4Y6 MACF1--TMEM53 -0.140002936850482 4.49618317077538 NA NA no change differentially expressed NA NA frameshift MACF1 NA TMEM53 NA Oncogene NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 NFKBID--ACTN4 1.5184772240444 4.03398841651704 NA NA no change differentially expressed NA NA in-frame NFKBID NA ACTN4 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X7HC5YCY -BS_W4H1D4Y6 CTNND2--EXOC3 -2.81395566425319 -0.10763096993163 NA NA differentially expressed no change NA NA frameshift CTNND2 NA EXOC3 NA CosmicCensus, Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_X7HC5YCY -BS_W4H1D4Y6 SLC12A7--AHRR 2.85137239279467 1.87462107768275 NA NA differentially expressed no change NA NA frameshift SLC12A7 NA AHRR NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA STARFUSION, ARRIBA 2 PT_X7HC5YCY -BS_W4H1D4Y6 PTPRS--SLC6A3 3.77742760462043 -0.258038939045862 NA NA differentially expressed no change NA NA frameshift PTPRS NA SLC6A3 NA NA Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_X7HC5YCY -BS_W4H1D4Y6 MACF1--TMEM53 -0.140002936850482 4.49618317077538 NA NA no change differentially expressed NA NA in-frame MACF1 NA TMEM53 NA Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_X7HC5YCY -BS_W4H1D4Y6 ST20-MTHFS--CEMIP 1.64221404266286 3.16871519349232 NA NA no change differentially expressed NA NA frameshift ST20-MTHFS NA CEMIP NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X7HC5YCY -BS_W4H1D4Y6 PDCD6--SLC9A3 0.558667813889311 5.0392218737359 NA NA no change differentially expressed NA NA in-frame PDCD6 NA SLC9A3 NA Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_X7HC5YCY -BS_W80TJC27 PREX2--PREX2 3.44106652906838 3.44106652906838 NA NA differentially expressed differentially expressed NA NA in-frame PREX2 NA PREX2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_R6WWH1QX -BS_W80TJC27 USP24--USP24 0.908824378630738 0.908824378630738 NA NA no change no change NA NA frameshift USP24 NA USP24 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_R6WWH1QX -BS_W80TJC27 CHD2--CHD2 0.624514512260675 0.624514512260675 NA NA no change no change NA NA in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_R6WWH1QX -BS_WAXJY4XQ CRTAC1--IFFO2/AL137127.1 -0.750212230675337 0.877038799237788 NA NA no change no change NA NA frameshift CRTAC1 NA IFFO2 AL137127.1 NA NA NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_WAXJY4XQ SPEG--SNORD2/MIR3924 -0.0205436969558636 NA NA NA no change NA NA NA frameshift SPEG NA SNORD2 MIR3924 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_WAXJY4XQ GPM6A--AC107214.2/RWDD4 -0.0756289611638536 NA NA 1.90300083332552 no change NA NA no change frameshift GPM6A NA AC107214.2 RWDD4 NA NA NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_WJ9H4NZZ GPM6A--AC107214.2/RWDD4 0.152855881136225 NA NA 2.60302112114679 no change NA NA differentially expressed frameshift GPM6A NA AC107214.2 RWDD4 NA NA NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_WJ9H4NZZ CRTAC1--IFFO2/AL137127.1 -0.875597991800187 1.16606587708859 NA NA no change no change NA NA frameshift CRTAC1 NA IFFO2 AL137127.1 NA NA NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_WJ9H4NZZ SPEG--SNORD2/MIR3924 0.373873119948355 NA NA NA no change NA NA NA frameshift SPEG NA SNORD2 MIR3924 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_X0XXN9BK OSTM1--QKI 1.74000882161834 0.848223352543639 NA NA no change no change NA NA in-frame OSTM1 NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA STARFUSION, ARRIBA 2 PT_Z4BF2NSB -BS_X0XXN9BK ENAH--PLCH2 2.01410033551963 0.117026353729745 NA NA differentially expressed no change NA NA frameshift ENAH NA PLCH2 NA Oncogene Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_Z4BF2NSB -BS_X0XXN9BK ZNF704--MRPS28 2.18845526039285 0.0817416853747794 NA NA differentially expressed no change NA NA in-frame ZNF704 NA MRPS28 NA TranscriptionFactor NA NA NA NA STARFUSION, ARRIBA 2 PT_Z4BF2NSB -BS_X4DD4KSZ ARHGAP42--YAP1 6.17986761171091 2.43657489212946 NA NA differentially expressed differentially expressed NA NA frameshift ARHGAP42 NA YAP1 NA NA TumorSuppressorGene, Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_A06JR0E5 -BS_X67GTEM6 ABCC9--ABCC9 5.72759550712903 5.72759550712903 NA NA differentially expressed differentially expressed NA NA in-frame ABCC9 NA ABCC9 NA NA NA NA NA NA ARRIBA 1 PT_F9G665B1 -BS_XF0ZX2B3 DNAH11--DNAH11 1.6734607877109 1.6734607877109 NA NA no change no change NA NA in-frame DNAH11 NA DNAH11 NA NA NA NA NA NA ARRIBA 1 PT_GAM3E6M3 -BS_XF0ZX2B3 CHD2--CHD2 1.47162766116027 1.47162766116027 NA NA no change no change NA NA in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_GAM3E6M3 -BS_Y8D1F5WW SYCP1--SYCP1 20.7073081052413 20.7073081052413 NA NA differentially expressed differentially expressed NA NA frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_ABMAQYY2 -BS_YB07VF1X NR6A1--DENND1A 2.21074993333533 0.328106568521772 NA NA differentially expressed no change NA NA frameshift NR6A1 NA DENND1A NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_HFQNKP5X -BS_YB07VF1X ADCY9--CA5B 1.372280825009 3.25796969147655 NA NA no change differentially expressed NA NA frameshift ADCY9 NA CA5B NA NA NA NA NA NA ARRIBA 1 PT_HFQNKP5X -BS_Z3RCA1T9 ITFG2--ANO2 2.27283595946951 3.87967563558504 NA NA differentially expressed differentially expressed NA NA in-frame ITFG2 NA ANO2 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_C9YDTZPA -BS_Z3RCA1T9 ITFG2--ANO2 2.27283595946951 3.87967563558504 NA NA differentially expressed differentially expressed NA NA frameshift ITFG2 NA ANO2 NA NA NA NA NA NA ARRIBA 1 PT_C9YDTZPA -BS_Z7890YNR FNBP4--ASRGL1 0.319863715247864 -1.7622822731829 NA NA no change no change NA NA in-frame FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA ARRIBA 1 PT_99S5BPE3 -BS_Z7890YNR FNBP4--ASRGL1 0.319863715247864 -1.7622822731829 NA NA no change no change NA NA frameshift FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA ARRIBA 1 PT_99S5BPE3 -BS_ZD5HN296 PEX5--SLCO1C1 0.51856186430416 0.84607160384629 NA NA no change no change NA NA in-frame PEX5 NA SLCO1C1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_89XRZBSG -BS_ZD5HN296 SPATS2L--SLC25A12 1.23697042940306 -0.532036998890951 NA NA no change no change NA NA in-frame SPATS2L NA SLC25A12 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_89XRZBSG -BS_ZD5HN296 PEX5--SLCO1C1 0.51856186430416 0.84607160384629 NA NA no change no change NA NA frameshift PEX5 NA SLCO1C1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_89XRZBSG -BS_ZD5HN296 EHMT1--MAN1B1 -0.000510567029563247 0.522913131332583 NA NA no change no change NA NA in-frame EHMT1 NA MAN1B1 NA Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_89XRZBSG -BS_ZD5HN296 XPO6--AHSP -0.45309344557087 4.53256189657759 NA NA no change differentially expressed NA NA frameshift XPO6 NA AHSP NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_89XRZBSG -BS_ZVWE73JZ SOD2--RAET1E-AS1 1.87300673439663 2.66082219694778 NA NA no change differentially expressed NA NA frameshift SOD2 NA RAET1E-AS1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_59D00MBQ -BS_ZVWE73JZ ARHGEF28--AC143336.1/MAP1B 1.06143912895008 NA NA 2.84897938653338 no change NA NA differentially expressed frameshift ARHGEF28 NA AC143336.1 MAP1B NA NA NA NA NA ARRIBA 1 PT_59D00MBQ -BS_014EVM2D FAM131B--BRAF -1.10400924507091 1.67803191816588 NA NA no change no change NA NA in-frame FAM131B NA BRAF NA CosmicCensus Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_S21ZTKPS -BS_03FT4S8B MYO3A--MYO3A 3.32856890310251 3.32856890310251 NA NA differentially expressed differentially expressed NA NA frameshift MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_5KRVE8E4 -BS_0448A413 EWSR1--FLI1 0.145216157287144 3.45251406467608 NA NA no change differentially expressed NA NA in-frame EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_VHS5RM2K -BS_044XZ8ST KCNH1--AL590132.1 2.70715082215773 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_QAX38GM7 -BS_044XZ8ST ANTXR1--BRAF 2.97839096214668 1.85547105410597 NA NA differentially expressed no change NA NA in-frame ANTXR1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_QAX38GM7 -BS_044XZ8ST AL590132.1--KCNH1 NA 2.70715082215773 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_QAX38GM7 -BS_044XZ8ST ANTXR1--BRAF 2.97839096214668 1.85547105410597 NA NA differentially expressed no change NA NA frameshift ANTXR1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_QAX38GM7 -BS_044XZ8ST KCNH1--AL590132.1 2.70715082215773 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_QAX38GM7 -BS_044XZ8ST BRAF--ANTXR1 1.85547105410597 2.97839096214668 NA NA no change differentially expressed NA NA in-frame BRAF NA ANTXR1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_QAX38GM7 -BS_044XZ8ST KCNH1--KCNH1 2.70715082215773 2.70715082215773 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QAX38GM7 -BS_044XZ8ST FPGT-TNNI3K--FPGT-TNNI3K 1.58824580806708 1.58824580806708 NA NA no change no change NA NA frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_QAX38GM7 -BS_044XZ8ST ERC2--ERC2 1.27436642939706 1.27436642939706 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QAX38GM7 -BS_044XZ8ST AL590132.1--KCNH1 NA 2.70715082215773 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_QAX38GM7 -BS_044XZ8ST NUP214--AIF1L/NUP214 1.32623052266225 1.11507172263449 NA 1.32623052266225 no change no change NA no change frameshift NUP214 NA AIF1L NUP214 CosmicCensus, Oncogene NA NA CosmicCensus, Oncogene NA ARRIBA 1 PT_QAX38GM7 -BS_063ERW0R FAM135B--FAM135B 1.04580981901164 1.04580981901164 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_3V5GTCJR -BS_063ERW0R ERC2--ERC2 0.793413476949212 0.793413476949212 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3V5GTCJR -BS_063ERW0R KIAA1549--BRAF 4.75315897131261 2.57334733194686 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_3V5GTCJR -BS_06AMMCXR KIAA1549--BRAF 3.98654285462887 2.21383711271607 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_Q3EP24V1 -BS_06XH7EVF FOS--LINC01258 1.79122937023758 0.388264711279293 NA NA no change no change NA NA frameshift FOS NA LINC01258 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_G8DRDA33 -BS_07ANYSYQ ERC2--ERC2 1.1831071300745 1.1831071300745 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_S4H6KA09 -BS_07ANYSYQ KCNH1--AL590132.1 1.73628719321685 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_S4H6KA09 -BS_07ANYSYQ GRK2--TAMM41 NA -0.0290738026388422 NA NA NA no change NA NA frameshift GRK2 NA TAMM41 NA Kinase NA NA NA NA ARRIBA 1 PT_S4H6KA09 -BS_07ANYSYQ C11orf95--RELA 4.29826190280346 3.97585737028289 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_S4H6KA09 -BS_07ANYSYQ KCNH1--AL590132.1 1.73628719321685 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_S4H6KA09 -BS_07ANYSYQ KCNH1--KCNH1 1.73628719321685 1.73628719321685 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_S4H6KA09 -BS_07ANYSYQ RPS6KA3--AL807740.1/AL807742.1 2.47419020540172 NA NA NA differentially expressed NA NA NA frameshift RPS6KA3 NA AL807740.1 AL807742.1 Kinase NA NA NA NA ARRIBA 1 PT_S4H6KA09 -BS_07ANYSYQ ATM--ATP2B2 1.65642307105557 1.09393953668131 NA NA no change no change NA NA frameshift ATM NA ATP2B2 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_S4H6KA09 -BS_07ANYSYQ AL590132.1--KCNH1 NA 1.73628719321685 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_S4H6KA09 -BS_07ANYSYQ INPPL1--GRIK4 0.390513395974238 1.51742656624705 NA NA no change no change NA NA frameshift INPPL1 NA GRIK4 NA Oncogene NA NA NA NA ARRIBA 1 PT_S4H6KA09 -BS_07ANYSYQ ZNF143--MIR4299/AC131935.2 0.0919084587033184 NA NA NA no change NA NA NA frameshift ZNF143 NA MIR4299 AC131935.2 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_S4H6KA09 -BS_07ANYSYQ VGLL4--AC099669.2/ZKSCAN7 2.11286861279109 NA NA 2.79994172898606 differentially expressed NA NA differentially expressed frameshift VGLL4 NA AC099669.2 ZKSCAN7 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_S4H6KA09 -BS_07ANYSYQ AL590132.1--KCNH1 NA 1.73628719321685 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_S4H6KA09 -BS_09R7GDA7 ERC2--ERC2 2.39279317199895 2.39279317199895 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0PT33SCF -BS_09R7GDA7 OPCML--ADGRL1 1.65684127384806 0.659512892749383 NA NA no change no change NA NA in-frame OPCML NA ADGRL1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_0PT33SCF -BS_09Z7TC35 ST18--ST18 1.84297465836006 1.84297465836006 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_YHTK536P -BS_0HW7W7SD WNK3--WNK3 11.3613199272962 11.3613199272962 NA NA differentially expressed differentially expressed NA NA in-frame WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_C73C5BBZ -BS_0J9SHHSC KIAA1549--BRAF 5.98105169686657 1.57495446684748 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_WVC247PK -BS_0SCXXM6N KIAA1549--BRAF 4.52427206746781 1.77370705633981 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_SMDEQVHJ -BS_0T17SY47 ERC2--ERC2 1.48611908203865 1.48611908203865 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BQ8BQ01J -BS_0T17SY47 KCNH1--AL590132.1 2.25104172243631 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_BQ8BQ01J -BS_0T17SY47 RFX4--RFX4 0.745857653213462 0.745857653213462 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_BQ8BQ01J -BS_0T17SY47 CNTN4--CNTN4 -0.194241403729027 -0.194241403729027 NA NA no change no change NA NA in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BQ8BQ01J -BS_0T17SY47 RGS7--RGS7 -1.12148311880205 -1.12148311880205 NA NA no change no change NA NA frameshift RGS7 NA RGS7 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_BQ8BQ01J -BS_0T17SY47 AL590132.1--KCNH1 NA 2.25104172243631 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_BQ8BQ01J -BS_0T17SY47 CSMD3--CSMD3 3.90372148926297 3.90372148926297 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BQ8BQ01J -BS_0T17SY47 KCNH1--AL590132.1 2.25104172243631 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_BQ8BQ01J -BS_0T17SY47 KCNH1--KCNH1 2.25104172243631 2.25104172243631 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BQ8BQ01J -BS_0T17SY47 JAKMIP1--JAKMIP1 -0.709473057211818 -0.709473057211818 NA NA no change no change NA NA in-frame JAKMIP1 NA JAKMIP1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BQ8BQ01J -BS_0T17SY47 AL590132.1--KCNH1 NA 2.25104172243631 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_BQ8BQ01J -BS_0T17SY47 MYT1L--MYT1L 0.630878365167424 0.630878365167424 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_BQ8BQ01J -BS_0VXZCRJS TRIO--RETREG1 3.00611327748066 NA NA NA differentially expressed NA NA NA frameshift TRIO NA RETREG1 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_40HTPY49 -BS_0VXZCRJS EBF4--ASB16-AS1 2.50490442344328 0.477242131841794 NA NA differentially expressed no change NA NA frameshift EBF4 NA ASB16-AS1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_40HTPY49 -BS_0WQJP6ZG C11orf95--RELA 3.81878607332284 2.68699342393284 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_Y6Y9JJ9P -BS_0WVJYM9R LMNTD1--LMNTD1 4.92855504459045 4.92855504459045 NA NA differentially expressed differentially expressed NA NA frameshift LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_MNR94DEV -BS_0WVJYM9R ERC2--ERC2 -0.331149059048462 -0.331149059048462 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_MNR94DEV -BS_0WVJYM9R KIAA1549--BRAF 1.93972473335168 1.3781986787396 NA NA no change no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_MNR94DEV -BS_0WVJYM9R RFX4--RFX4 1.83957833862769 1.83957833862769 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_MNR94DEV -BS_0X9EGHY2 CSMD3--CSMD3 3.30483870934784 3.30483870934784 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_3KK1F95W -BS_0XEG6SNV GNAQ--SETX -0.831175939702553 0.999775745614224 NA NA no change no change NA NA in-frame GNAQ NA SETX NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_82A9SDRN -BS_0XEG6SNV GNAQ--SETX -0.831175939702553 0.999775745614224 NA NA no change no change NA NA frameshift GNAQ NA SETX NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_82A9SDRN -BS_0XEG6SNV FAM129B--RALGDS 2.26588207400686 0.0899382594061848 NA NA differentially expressed no change NA NA frameshift FAM129B NA RALGDS NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_82A9SDRN -BS_0XEG6SNV C11orf95--RELA 4.93417458854812 4.61048400802179 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_82A9SDRN -BS_0Y66ZBWE MTSS1--MTSS1 3.49822788080021 3.49822788080021 NA NA differentially expressed differentially expressed NA NA frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_V2F0865M -BS_0Y66ZBWE ERC2--ERC2 1.20323853096588 1.20323853096588 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_V2F0865M -BS_11WY983P SNTB2--AC109462.1/MMP2 4.68887942428743 NA NA 5.10226346998538 differentially expressed NA NA differentially expressed frameshift SNTB2 NA AC109462.1 MMP2 NA NA NA Oncogene NA ARRIBA 1 PT_7A1PYTP9 -BS_13CGKADW PLEKHA8--PLEKHA8 1.75960951407526 1.75960951407526 NA NA no change no change NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WGWMA5AZ -BS_13CGKADW MAD1L1--MAD1L1 -1.64347859257365 -1.64347859257365 NA NA no change no change NA NA frameshift MAD1L1 NA MAD1L1 NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_WGWMA5AZ -BS_13CGKADW FAM135B--FAM135B 1.83549003010567 1.83549003010567 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_WGWMA5AZ -BS_17WYVEEC KIAA1549--BRAF 5.32195790374399 2.042377140032 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_FKWCVXNC -BS_196BBNEJ MYO3A--MYO3A 5.21665742357809 5.21665742357809 NA NA differentially expressed differentially expressed NA NA frameshift MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_BNARR0N6 -BS_1A6MQ9ZA ACACB--NF1 -0.152660331336249 0.540535682527793 NA NA no change no change NA NA in-frame ACACB NA NF1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JSFBMK5V -BS_1A6MQ9ZA PTPRT--LINC01527 0.944601384687439 140.028567063901 NA NA no change differentially expressed NA NA frameshift PTPRT NA LINC01527 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_JSFBMK5V -BS_1A6MQ9ZA CTIF--MSRB3 -4.30741189747172 0.489445650295316 NA NA differentially expressed no change NA NA frameshift CTIF NA MSRB3 NA Oncogene NA NA NA NA ARRIBA 1 PT_JSFBMK5V -BS_1A6MQ9ZA SATB2--MAIP1/SPATS2L 2.59047234295806 NA NA 3.17116637456849 differentially expressed NA NA differentially expressed frameshift SATB2 NA MAIP1 SPATS2L TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JSFBMK5V -BS_1A6MQ9ZA STC2--MKL1/GAPDHP37 7.66281356058567 0.847046130845051 NA 19.6277698690013 differentially expressed no change NA differentially expressed frameshift STC2 NA MKL1 GAPDHP37 NA Oncogene NA NA NA ARRIBA 1 PT_JSFBMK5V -BS_1AYRM596 ZBTB10--COL22A1 5.09826345921462 2.37421588804932 NA NA differentially expressed differentially expressed NA NA frameshift ZBTB10 NA COL22A1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_BPKVVWVB -BS_1AYRM596 FZD3--EBF2/RNA5SP258 3.41499880240102 0.0370109730094912 NA NA differentially expressed no change NA NA frameshift FZD3 NA EBF2 RNA5SP258 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_BPKVVWVB -BS_1AYRM596 JAK2--JAK2 2.4191121523732 2.4191121523732 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_BPKVVWVB -BS_1D6PZNKN ZSWIM4--AHI1 7.36634127448078 -1.45727161878108 NA NA differentially expressed no change NA NA in-frame ZSWIM4 NA AHI1 NA NA Oncogene NA NA NA ARRIBA 1 PT_7DTGJYA7 -BS_1D6PZNKN ZNF43--ERC1 7.11974294754323 2.58774696691409 NA NA differentially expressed differentially expressed NA NA in-frame ZNF43 NA ERC1 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_7DTGJYA7 -BS_1D6PZNKN BAZ2B--CECR3 1.46987769611355 4.80260175288856 NA NA no change differentially expressed NA NA frameshift BAZ2B NA CECR3 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7DTGJYA7 -BS_1D6PZNKN RANBP3--ZNF675 0.49549693378489 1.5947311326681 NA NA no change no change NA NA frameshift RANBP3 NA ZNF675 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_7DTGJYA7 -BS_1D6PZNKN HIP1--IGF2BP2 4.01387880228366 4.79042819116115 NA NA differentially expressed differentially expressed NA NA in-frame HIP1 NA IGF2BP2 NA CosmicCensus, Oncogene CosmicCensus NA NA NA ARRIBA 1 PT_7DTGJYA7 -BS_1D6PZNKN ROCK1--ATP6V0E1 1.98534038183298 0.10752429713647 NA NA no change no change NA NA in-frame ROCK1 NA ATP6V0E1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_7DTGJYA7 -BS_1D6PZNKN RBX1--AC009961.1 -2.1054732458689 NA NA NA differentially expressed NA NA NA frameshift RBX1 NA AC009961.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_7DTGJYA7 -BS_1D6PZNKN RAB8A--PRKN 4.98113878549812 NA NA NA differentially expressed NA NA NA frameshift RAB8A NA PRKN NA Oncogene NA NA NA NA ARRIBA 1 PT_7DTGJYA7 -BS_1D6PZNKN CACNA1I--MKL1 -1.02234535968842 2.44755578991604 NA NA no change differentially expressed NA NA frameshift CACNA1I NA MKL1 NA NA Oncogene NA NA NA ARRIBA 1 PT_7DTGJYA7 -BS_1D6PZNKN BCL2L13--PARVB 2.06175086318955 1.23341423655678 NA NA differentially expressed no change NA NA frameshift BCL2L13 NA PARVB NA NA Oncogene NA NA NA ARRIBA 1 PT_7DTGJYA7 -BS_1D6PZNKN FGFR1--TACC1 4.20212328302906 2.8282523643421 NA NA differentially expressed differentially expressed NA NA in-frame FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA ARRIBA 1 PT_7DTGJYA7 -BS_1D6PZNKN TACC1--TACC1 2.8282523643421 2.8282523643421 NA NA differentially expressed differentially expressed NA NA frameshift TACC1 NA TACC1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7DTGJYA7 -BS_1D6PZNKN FGF14--ESRRG/GPATCH2 0.763260337450393 1.73019604585085 NA 1.84045427593537 no change no change NA no change frameshift FGF14 NA ESRRG GPATCH2 Oncogene Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_7DTGJYA7 -BS_1D6PZNKN UTRN--AL078604.2/SOD2 2.72531247521673 NA NA 2.09353253002635 differentially expressed NA NA differentially expressed frameshift UTRN NA AL078604.2 SOD2 NA NA NA TumorSuppressorGene NA ARRIBA 1 PT_7DTGJYA7 -BS_1D6PZNKN OXSR1--SCFD2 2.11289154815803 6.22466109042114 NA NA differentially expressed differentially expressed NA NA in-frame OXSR1 NA SCFD2 NA Kinase NA NA NA NA ARRIBA 1 PT_7DTGJYA7 -BS_1EBQ3T20 TAOK3--TAOK3 -0.715184669687764 -0.715184669687764 NA NA no change no change NA NA frameshift TAOK3 NA TAOK3 NA Kinase Kinase NA NA NA ARRIBA 1 PT_4347ZBEX -BS_1EBQ3T20 NEK1--NEK1 0.597899965882944 0.597899965882944 NA NA no change no change NA NA frameshift NEK1 NA NEK1 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_4347ZBEX -BS_1EBQ3T20 FANCC--FANCC 2.41042943399826 2.41042943399826 NA NA differentially expressed differentially expressed NA NA frameshift FANCC NA FANCC NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_4347ZBEX -BS_1EBQ3T20 ARAP2--ARAP2 0.324830471918508 0.324830471918508 NA NA no change no change NA NA in-frame ARAP2 NA ARAP2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_4347ZBEX -BS_1EBQ3T20 XRCC4--MSH3 6.82882535349175 6.30572119148074 NA NA differentially expressed differentially expressed NA NA frameshift XRCC4 NA MSH3 NA NA Oncogene NA NA NA ARRIBA 1 PT_4347ZBEX -BS_1EBQ3T20 TXNL1--TCF4 1.75997436278541 4.86925443513667 NA NA no change differentially expressed NA NA frameshift TXNL1 NA TCF4 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_4347ZBEX -BS_1EBQ3T20 MSH3--MSH3 6.30572119148074 6.30572119148074 NA NA differentially expressed differentially expressed NA NA frameshift MSH3 NA MSH3 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_4347ZBEX -BS_1EBQ3T20 NSMCE2--SDCCAG8 2.28757327744374 1.12937069070223 NA NA differentially expressed no change NA NA frameshift NSMCE2 NA SDCCAG8 NA NA Oncogene NA NA NA ARRIBA 1 PT_4347ZBEX -BS_1EBQ3T20 MTA3--MTA3 0.198737135796564 0.198737135796564 NA NA no change no change NA NA frameshift MTA3 NA MTA3 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_4347ZBEX -BS_1G3WYEN3 FAM135B--FAM135B 1.12875296786479 1.12875296786479 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_TXFYRDP4 -BS_1G3WYEN3 PLEKHA8--PLEKHA8 0.82351606949623 0.82351606949623 NA NA no change no change NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_TXFYRDP4 -BS_1G3WYEN3 KCNH1--AL590132.1 1.57401575148041 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_TXFYRDP4 -BS_1G3WYEN3 KCNH1--KCNH1 1.57401575148041 1.57401575148041 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_TXFYRDP4 -BS_1G3WYEN3 AL590132.1--KCNH1 NA 1.57401575148041 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_TXFYRDP4 -BS_1G3WYEN3 AL590132.1--KCNH1 NA 1.57401575148041 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_TXFYRDP4 -BS_1G3WYEN3 MYT1L--MYT1L 0.991821296744162 0.991821296744162 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_TXFYRDP4 -BS_1G3WYEN3 CSMD3--CSMD3 1.59559003516752 1.59559003516752 NA NA no change no change NA NA frameshift CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_TXFYRDP4 -BS_1G3WYEN3 KCNH1--AL590132.1 1.57401575148041 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_TXFYRDP4 -BS_1G3WYEN3 ERC2--ERC2 2.18995879836283 2.18995879836283 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_TXFYRDP4 -BS_1HQ76V6D QKI--LPA 0.983216698209454 24.2849223355613 NA NA no change differentially expressed NA NA frameshift QKI NA LPA NA TumorSuppressorGene, CosmicCensus NA NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_1HQ76V6D LPA--QKI 24.2849223355613 0.983216698209454 NA NA differentially expressed no change NA NA frameshift LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_1HQ76V6D EWSR1--PLAGL1 -0.0968120164783724 1.78228987357874 NA NA no change no change NA NA frameshift EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_1HQ76V6D EWSR1--PLAGL1 -0.0968120164783724 1.78228987357874 NA NA no change no change NA NA in-frame EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_1HQ76V6D LPA--QKI 24.2849223355613 0.983216698209454 NA NA differentially expressed no change NA NA in-frame LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_1HQ76V6D MYO18B--LINC02560 7.4472859321154 NA NA NA differentially expressed NA NA NA frameshift MYO18B NA LINC02560 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_1HQ76V6D IGF2R--AL133456.1/AL121885.2 2.04742490233434 NA NA NA differentially expressed NA NA NA frameshift IGF2R NA AL133456.1 AL121885.2 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_1J2WQ08M MAML2--YAP1 4.94291467230944 3.13331937181179 NA NA differentially expressed differentially expressed NA NA in-frame MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion ARRIBA 1 PT_MKDQZ17N -BS_1J2WQ08M YAP1--MAML2 3.13331937181179 4.94291467230944 NA NA differentially expressed differentially expressed NA NA in-frame YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_MKDQZ17N -BS_1KYGSMA7 KIAA1549--BRAF 4.58457187095883 2.14947466664326 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_YGN06RPZ -BS_1KYGSMA7 ERC2--ERC2 1.00987191920045 1.00987191920045 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_YGN06RPZ -BS_1N7MQZGR PDE4B--DNAJC6 2.58525816386667 0.668890087124145 NA NA differentially expressed no change NA NA frameshift PDE4B NA DNAJC6 NA NA Oncogene NA NA NA ARRIBA 1 PT_NK8A49X5 -BS_1N7MQZGR BMP2K--AC124016.1/IGBP1P4 3.03935825117924 NA NA -0.497820617402424 differentially expressed NA NA no change frameshift BMP2K NA AC124016.1 IGBP1P4 Kinase NA NA NA NA ARRIBA 1 PT_NK8A49X5 -BS_1N9XZXGE EWSR1--FLI1 -0.304383192183024 3.19568116732593 NA NA no change differentially expressed NA NA in-frame EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_X8S0H6TG -BS_1N9XZXGE EWSR1--FLI1 -0.304383192183024 3.19568116732593 NA NA no change differentially expressed NA NA frameshift EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_X8S0H6TG -BS_1QXEC43H RAB8A--CKM 1.24600620499223 -0.363065600469336 NA NA no change no change NA NA in-frame RAB8A NA CKM NA Oncogene NA NA NA NA ARRIBA 1 PT_FN4GEEFR -BS_1QXEC43H RAB8A--CKM 1.24600620499223 -0.363065600469336 NA NA no change no change NA NA frameshift RAB8A NA CKM NA Oncogene NA NA NA NA ARRIBA 1 PT_FN4GEEFR -BS_1SVVER1H SH3PXD2A--HTRA1 4.92809522025514 -0.321746797896133 NA NA differentially expressed no change NA NA in-frame SH3PXD2A NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_RM9AZ7A8 -BS_1SVVER1H HTRA1--SH3PXD2A -0.321746797896133 4.92809522025514 NA NA no change differentially expressed NA NA in-frame HTRA1 NA SH3PXD2A NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_RM9AZ7A8 -BS_1T19NFJ8 PLEKHA8--PLEKHA8 0.810636972331933 0.810636972331933 NA NA no change no change NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QEMT1845 -BS_1T19NFJ8 KCNH1--KCNH1 2.31351461601261 2.31351461601261 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QEMT1845 -BS_1T19NFJ8 AL590132.1--KCNH1 NA 2.31351461601261 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_QEMT1845 -BS_1T19NFJ8 MYT1L--MYT1L 0.246160012607327 0.246160012607327 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_QEMT1845 -BS_1T19NFJ8 ERC2--ERC2 1.74597156519588 1.74597156519588 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QEMT1845 -BS_1T19NFJ8 CNTN4--CNTN4 0.309012744183239 0.309012744183239 NA NA no change no change NA NA in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QEMT1845 -BS_1T19NFJ8 KCNH1--AL590132.1 2.31351461601261 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_QEMT1845 -BS_1T19NFJ8 AL590132.1--KCNH1 NA 2.31351461601261 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_QEMT1845 -BS_1T19NFJ8 KCNH1--AL590132.1 2.31351461601261 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_QEMT1845 -BS_1T19NFJ8 CSMD3--CSMD3 0.925466480165088 0.925466480165088 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_QEMT1845 -BS_1TPWFSK6 CP--IGFBP7 3.44810130620808 4.05915928752228 NA NA differentially expressed differentially expressed NA NA frameshift CP NA IGFBP7 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_7JQ24F35 -BS_1TWCV047 INTS6--AL138963.3 4.1363528340921 NA NA NA differentially expressed NA NA NA frameshift INTS6 NA AL138963.3 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_85RSG67R -BS_1TWCV047 INTS6--TPT1 4.1363528340921 -1.18695631247714 NA NA differentially expressed no change NA NA in-frame INTS6 NA TPT1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_85RSG67R -BS_1XJ73KBQ LPP--OXR1 10.0115116127008 -0.358763637612953 NA NA differentially expressed no change NA NA frameshift LPP NA OXR1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_AXVH36AM -BS_1XJ73KBQ ERC2--ERC2 -0.331149059048462 -0.331149059048462 NA NA no change no change NA NA frameshift ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AXVH36AM -BS_1XJ73KBQ ZFPM2--PEX5L 0.936864478988185 0.438051736010992 NA NA no change no change NA NA frameshift ZFPM2 NA PEX5L NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_AXVH36AM -BS_1XJ73KBQ HEY1--NCOA2 5.77090436369981 8.72166180428209 NA NA differentially expressed differentially expressed NA NA in-frame HEY1 NA NCOA2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_AXVH36AM -BS_1ZVXF5FE KIAA1549--BRAF 3.84344927061632 1.63525298468285 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_TS0FW57Z -BS_21ET39G7 STIL--PPP2CA 2.98097418231983 1.44500319157731 NA NA differentially expressed no change NA NA frameshift STIL NA PPP2CA NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA ARRIBA 1 PT_KZ56XHJT -BS_21ET39G7 TNPO3--SRPK1 0.57023464645122 0.204734364202762 NA NA no change no change NA NA in-frame TNPO3 NA SRPK1 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_KZ56XHJT -BS_21ET39G7 YPEL1--ZMYND11 -0.83087018550373 1.00130887266746 NA NA no change no change NA NA frameshift YPEL1 NA ZMYND11 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_KZ56XHJT -BS_21ET39G7 CDK18--PHLDB1 1.29271841450185 -0.0982268822476745 NA NA no change no change NA NA in-frame CDK18 NA PHLDB1 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_KZ56XHJT -BS_21RE8W46 KIAA1549--BRAF 3.18105865603248 1.07239496488021 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_VABP80N2 -BS_23M72ABG PLCE1--PIPSL/PLCE1 7.12660042928364 3.55257966462404 NA 7.12660042928364 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_AQWDQW27 -BS_23M72ABG YAP1--FAM118B 3.93119706595254 1.75639507890179 NA NA differentially expressed no change NA NA frameshift YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_AQWDQW27 -BS_23M72ABG YAP1--FAM118B 3.93119706595254 1.75639507890179 NA NA differentially expressed no change NA NA in-frame YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_AQWDQW27 -BS_23QW0BBA PDSS2--FIG4 3.20411347250763 0.217438410525064 NA NA differentially expressed no change NA NA frameshift PDSS2 NA FIG4 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_3X3MF8ZD -BS_23QW0BBA CCND1--MYO16-AS1 10.5710961714118 8.10404183638938 NA NA differentially expressed differentially expressed NA NA frameshift CCND1 NA MYO16-AS1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_3X3MF8ZD -BS_23QW0BBA ORAOV1--AP000439.1/AP000439.4 5.28193890089531 0.528912024605222 NA NA differentially expressed no change NA NA frameshift ORAOV1 NA AP000439.1 AP000439.4 Oncogene NA NA NA NA ARRIBA 1 PT_3X3MF8ZD -BS_23QW0BBA ZNF510--YWHAEP7 3.31742349310347 15.4358550040268 NA NA differentially expressed differentially expressed NA NA frameshift ZNF510 NA YWHAEP7 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_3X3MF8ZD -BS_23QW0BBA GAB2--CYB561A3 1.36346871531179 -0.0129668352114572 NA NA no change no change NA NA frameshift GAB2 NA CYB561A3 NA Oncogene NA NA NA NA ARRIBA 1 PT_3X3MF8ZD -BS_23QW0BBA CRK--DNAH2 1.81290135948455 2.19118875693626 NA NA no change differentially expressed NA NA frameshift CRK NA DNAH2 NA Oncogene NA NA NA NA ARRIBA 1 PT_3X3MF8ZD -BS_23QW0BBA TTC19--ZBTB4 0.536131738779444 0.18866176548857 NA NA no change no change NA NA frameshift TTC19 NA ZBTB4 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_3X3MF8ZD -BS_23QW0BBA CCND1--MYO16 10.5710961714118 17.0127688625013 NA NA differentially expressed differentially expressed NA NA frameshift CCND1 NA MYO16 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_3X3MF8ZD -BS_23QW0BBA GAB2--CYB561A3 1.36346871531179 -0.0129668352114572 NA NA no change no change NA NA in-frame GAB2 NA CYB561A3 NA Oncogene NA NA NA NA ARRIBA 1 PT_3X3MF8ZD -BS_23QW0BBA SMG6--AC015908.2/RN7SL601P -0.485293613320469 NA NA -0.0406598077327238 no change NA NA no change frameshift SMG6 NA AC015908.2 RN7SL601P Oncogene NA NA NA NA ARRIBA 1 PT_3X3MF8ZD -BS_23W9EPFE ERC2--ERC2 0.513343935609362 0.513343935609362 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_1ZAWNGWT -BS_258RRGDM ERC2--ERC2 2.84392752082609 2.84392752082609 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DQ3ZCHB6 -BS_258RRGDM AL590132.1--KCNH1 NA 1.85236087834876 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DQ3ZCHB6 -BS_258RRGDM RFX4--RFX4 2.26314108904831 2.26314108904831 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_DQ3ZCHB6 -BS_258RRGDM KCNH1--AL590132.1 1.85236087834876 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DQ3ZCHB6 -BS_258RRGDM KCNH1--AL590132.1 1.85236087834876 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DQ3ZCHB6 -BS_258RRGDM KCNH1--KCNH1 1.85236087834876 1.85236087834876 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DQ3ZCHB6 -BS_258RRGDM AL590132.1--KCNH1 NA 1.85236087834876 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DQ3ZCHB6 -BS_258RRGDM NPAS2--NPAS2 0.269771267695986 0.269771267695986 NA NA no change no change NA NA frameshift NPAS2 NA NPAS2 NA TumorSuppressorGene, TranscriptionFactor TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_DQ3ZCHB6 -BS_25T139TX PLCE1--PIPSL/PLCE1 7.28203888459808 2.67418563276307 NA 7.28203888459808 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_TH8M3W34 -BS_264RCK7G ERC2--ERC2 1.2661717507735 1.2661717507735 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3A0B29QT -BS_273HKCT4 AL590132.1--KCNH1 NA 1.46666901488323 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_8CZ6ANE0 -BS_273HKCT4 AL590132.1--KCNH1 NA 1.46666901488323 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_8CZ6ANE0 -BS_273HKCT4 KCNH1--KCNH1 1.46666901488323 1.46666901488323 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_8CZ6ANE0 -BS_273HKCT4 ERC2--ERC2 1.34746483969891 1.34746483969891 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_8CZ6ANE0 -BS_273HKCT4 CSMD3--CSMD3 5.23305653172304 5.23305653172304 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_8CZ6ANE0 -BS_273HKCT4 KCNH1--AL590132.1 1.46666901488323 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_8CZ6ANE0 -BS_273HKCT4 KCNH1--AL590132.1 1.46666901488323 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_8CZ6ANE0 -BS_27QE6BV7 ERC2--ERC2 -0.0890707585641141 -0.0890707585641141 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_Z9QE51C3 -BS_27QE6BV7 EWSR1--PLAGL1 -1.20294640940025 1.35308887184032 NA NA no change no change NA NA frameshift EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_Z9QE51C3 -BS_27QE6BV7 EWSR1--PLAGL1 -1.20294640940025 1.35308887184032 NA NA no change no change NA NA in-frame EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_Z9QE51C3 -BS_2A162JH9 RSF1--AP001978.1/AP001541.1 4.43054698783958 NA NA NA differentially expressed NA NA NA frameshift RSF1 NA AP001978.1 AP001541.1 Oncogene NA NA NA NA ARRIBA 1 PT_JNEV57VK -BS_2A162JH9 PAX3--AC079834.1/AC068489.1 9.26183624232974 -0.0862444200531154 NA -0.0416358721398405 differentially expressed no change NA no change frameshift PAX3 NA AC079834.1 AC068489.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JNEV57VK -BS_2A162JH9 PAX3--AC068489.1/AC009302.1 9.26183624232974 -0.0416358721398405 NA NA differentially expressed no change NA NA frameshift PAX3 NA AC068489.1 AC009302.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JNEV57VK -BS_2A5R9MEJ CSMD3--CSMD3 4.77699179311779 4.77699179311779 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_FYPWZBH0 -BS_2ADZNNV4 PLEKHA8--PLEKHA8 -0.397064728442509 -0.397064728442509 NA NA no change no change NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NTK39NNV -BS_2ADZNNV4 KIAA1549--BRAF 4.11361394254672 1.02400854955345 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_NTK39NNV -BS_2ADZNNV4 RFX4--RFX4 2.00950541526478 2.00950541526478 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_NTK39NNV -BS_2AR3AP0N NTRK2--KCTD8 1.29478640701668 0.667697976144462 NA NA no change no change NA NA frameshift NTRK2 NA KCTD8 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_AWBPNFM5 -BS_2AR3AP0N ERC2--ERC2 1.27844700681759 1.27844700681759 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AWBPNFM5 -BS_2AR3AP0N NTRK2--KCTD8 1.29478640701668 0.667697976144462 NA NA no change no change NA NA in-frame NTRK2 NA KCTD8 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_AWBPNFM5 -BS_2AR3AP0N KCTD8--NTRK2 0.667697976144462 1.29478640701668 NA NA no change no change NA NA in-frame KCTD8 NA NTRK2 NA NA Oncogene, Kinase NA NA NA ARRIBA 1 PT_AWBPNFM5 -BS_2EMW8ZG3 NR2C2--LINC01107/LINC01937 2.16400179341092 -0.600954312611768 NA NA differentially expressed no change NA NA frameshift NR2C2 NA LINC01107 LINC01937 TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_FFRHWB74 -BS_2EMW8ZG3 FAT1--SNX25 3.8395958694308 -0.519557485361182 NA NA differentially expressed no change NA NA frameshift FAT1 NA SNX25 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_FFRHWB74 -BS_2EMW8ZG3 LRRFIP1--ARID1B 0.821296772736822 2.6468471584504 NA NA no change differentially expressed NA NA frameshift LRRFIP1 NA ARID1B NA Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_FFRHWB74 -BS_2JP7RBMB CTNND1--RTN4RL2 1.2582773528702 0.150489959327463 NA NA no change no change NA NA frameshift CTNND1 NA RTN4RL2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_Y74CVASJ -BS_2JP7RBMB TNRC6C--GRB2 0.0578223082237793 0.534807565026864 NA NA no change no change NA NA frameshift TNRC6C NA GRB2 NA NA Oncogene NA NA NA ARRIBA 1 PT_Y74CVASJ -BS_2R9TCR03 ARHGAP35--AP2S1/ARHGAP35 1.2500569401241 -0.195272763088246 NA 1.2500569401241 no change no change NA no change frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_ZMKMKCFQ -BS_2SFTWNVE WRN--WRN 2.05983198988594 2.05983198988594 NA NA differentially expressed differentially expressed NA NA in-frame WRN NA WRN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BG7GAFK6 -BS_2SFTWNVE JAK2--JAK2 2.58468951754131 2.58468951754131 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_BG7GAFK6 -BS_2SFTWNVE CCSER1--PTPN13 13.2583806842862 -0.0666091688913873 NA NA differentially expressed no change NA NA in-frame CCSER1 NA PTPN13 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BG7GAFK6 -BS_2SFTWNVE RFX4--RFX4 -0.625274441864876 -0.625274441864876 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_BG7GAFK6 -BS_2SFTWNVE ST18--ST18 2.7828276406102 2.7828276406102 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_BG7GAFK6 -BS_2W3NC4K1 SETD2--ROBO1 1.22376466649065 0.13508369195071 NA NA no change no change NA NA frameshift SETD2 NA ROBO1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_2E552BAR -BS_2WPQ8YCW KIAA1549--BRAF 6.0061826045331 1.4220656718871 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_KQK98ZVP -BS_2XD3MNKD KCNH1--KCNH1 2.58159713075994 2.58159713075994 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_YQWG98Z5 -BS_2XD3MNKD UNC5D--UNC5D 0.492355558787654 0.492355558787654 NA NA no change no change NA NA frameshift UNC5D NA UNC5D NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_YQWG98Z5 -BS_2XD3MNKD MYT1L--MYT1L -0.295553079649779 -0.295553079649779 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_YQWG98Z5 -BS_2XD3MNKD EPHA5--EPHA5 0.246097072382569 0.246097072382569 NA NA no change no change NA NA frameshift EPHA5 NA EPHA5 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_YQWG98Z5 -BS_2XD3MNKD CIT--CIT 0.123958519432002 0.123958519432002 NA NA no change no change NA NA in-frame CIT NA CIT NA Kinase Kinase NA NA NA ARRIBA 1 PT_YQWG98Z5 -BS_2XD3MNKD AL590132.1--KCNH1 NA 2.58159713075994 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_YQWG98Z5 -BS_2XD3MNKD CSMD3--CSMD3 0.960945459365096 0.960945459365096 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_YQWG98Z5 -BS_2XD3MNKD KCNH1--AL590132.1 2.58159713075994 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_YQWG98Z5 -BS_2XD3MNKD RGS7--RGS7 -1.39566455997908 -1.39566455997908 NA NA no change no change NA NA frameshift RGS7 NA RGS7 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_YQWG98Z5 -BS_2XD3MNKD ERC2--ERC2 1.49084113923567 1.49084113923567 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_YQWG98Z5 -BS_2XD3MNKD KCNH1--AL590132.1 2.58159713075994 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_YQWG98Z5 -BS_2XD3MNKD RFX4--RFX4 0.109390279491876 0.109390279491876 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_YQWG98Z5 -BS_2XD3MNKD AL590132.1--KCNH1 NA 2.58159713075994 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_YQWG98Z5 -BS_2YCJV2VV CSMD3--CSMD3 1.70353371672681 1.70353371672681 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_TD6ST5MG -BS_31TF0P1N BCR--SLC2A11 -0.876676165460182 -2.65360216673385 NA NA no change differentially expressed NA NA in-frame BCR NA SLC2A11 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M04EC74B -BS_31TF0P1N COL11A1--COL11A1 2.77333638297428 2.77333638297428 NA NA differentially expressed differentially expressed NA NA in-frame COL11A1 NA COL11A1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_M04EC74B -BS_31TF0P1N BCR--AP000350.4 -0.876676165460182 NA NA NA no change NA NA NA in-frame BCR NA AP000350.4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M04EC74B -BS_31TF0P1N BCR--GALNT12 -0.876676165460182 0.797031023722843 NA NA no change no change NA NA frameshift BCR NA GALNT12 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M04EC74B -BS_34201DKZ CSMD3--CSMD3 2.81221323095155 2.81221323095155 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_V0X73HEQ -BS_34201DKZ RFX4--RFX4 2.52381896892499 2.52381896892499 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_V0X73HEQ -BS_37GTVG4N CSMD3--CSMD3 2.118115024788 2.118115024788 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_DQT78GS5 -BS_37GTVG4N TTYH1--MIR515-2/MIR519C -0.0670729259556552 NA NA NA no change NA NA NA frameshift TTYH1 NA MIR515-2 MIR519C Oncogene NA NA NA NA ARRIBA 1 PT_DQT78GS5 -BS_37GTVG4N MYT1L--MYT1L 0.929142375649243 0.929142375649243 NA NA no change no change NA NA frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_DQT78GS5 -BS_37GTVG4N TTYH1--MIR512-2/MIR1323 -0.0670729259556552 NA NA NA no change NA NA NA frameshift TTYH1 NA MIR512-2 MIR1323 Oncogene NA NA NA NA ARRIBA 1 PT_DQT78GS5 -BS_37GTVG4N ZDHHC15--CASK 4.75421321444187 5.90286676925301 NA NA differentially expressed differentially expressed NA NA frameshift ZDHHC15 NA CASK NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_DQT78GS5 -BS_398KYV92 ERC2--ERC2 2.42597369773651 2.42597369773651 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_976P4557 -BS_398KYV92 CSMD3--CSMD3 1.88565493911134 1.88565493911134 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_976P4557 -BS_398KYV92 PRDM2--PRDM2 0.520561822537701 0.520561822537701 NA NA no change no change NA NA frameshift PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_976P4557 -BS_398KYV92 AL590132.1--KCNH1 NA 3.63653654788377 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_976P4557 -BS_398KYV92 AL590132.1--KCNH1 NA 3.63653654788377 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_976P4557 -BS_398KYV92 KCNH1--AL590132.1 3.63653654788377 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_976P4557 -BS_398KYV92 KCNH1--AL590132.1 3.63653654788377 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_976P4557 -BS_398KYV92 DCLK2--DCLK2 0.181453492689899 0.181453492689899 NA NA no change no change NA NA frameshift DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_976P4557 -BS_398KYV92 KCNH1--KCNH1 3.63653654788377 3.63653654788377 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_976P4557 -BS_39CGACC7 CNTN4--CNTN4 -0.280347057016724 -0.280347057016724 NA NA no change no change NA NA in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CBAYDRF9 -BS_39CGACC7 KCNH1--AL590132.1 1.72212556182583 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CBAYDRF9 -BS_39CGACC7 AL590132.1--KCNH1 NA 1.72212556182583 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_CBAYDRF9 -BS_39CGACC7 KCNH1--AL590132.1 1.72212556182583 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CBAYDRF9 -BS_39CGACC7 ERC2--ERC2 1.54977691457693 1.54977691457693 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CBAYDRF9 -BS_39CGACC7 AL590132.1--KCNH1 NA 1.72212556182583 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_CBAYDRF9 -BS_39CGACC7 JAKMIP1--JAKMIP1 -0.849399393779297 -0.849399393779297 NA NA no change no change NA NA in-frame JAKMIP1 NA JAKMIP1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CBAYDRF9 -BS_39CGACC7 CSMD3--CSMD3 1.05852973613184 1.05852973613184 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CBAYDRF9 -BS_39CGACC7 ARHGAP35--AP2S1/ARHGAP35 1.46719312470225 -0.426165439483713 NA 1.46719312470225 no change no change NA no change frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_CBAYDRF9 -BS_39CGACC7 KCNH1--KCNH1 1.72212556182583 1.72212556182583 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CBAYDRF9 -BS_3AC3SRWH SELENOI--MAP4K4 NA 1.90209067706911 NA NA NA no change NA NA in-frame SELENOI NA MAP4K4 NA NA Kinase NA NA NA ARRIBA 1 PT_SDPA6AAP -BS_3AC3SRWH PELI2--KTN1 -0.78854484357549 -0.782801969591798 NA NA no change no change NA NA frameshift PELI2 NA KTN1 NA NA CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_SDPA6AAP -BS_3BDAG9YN ATF6B--PGAM5 -0.31478938453304 4.20810341563799 NA NA no change differentially expressed NA NA frameshift ATF6B NA PGAM5 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_62VNQ8C4 -BS_3BDAG9YN PCDH18--FER 14.3051070598085 7.19072811929787 NA NA differentially expressed differentially expressed NA NA frameshift PCDH18 NA FER NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_62VNQ8C4 -BS_3DCBDJAT AMOTL1--AP002001.2/GUCY1A2 5.34484310769404 NA NA -0.719839821455339 differentially expressed NA NA no change frameshift AMOTL1 NA AP002001.2 GUCY1A2 NA NA NA Oncogene NA ARRIBA 1 PT_AKQZZPH8 -BS_3DCBDJAT YAP1--MAML2 3.21413289676854 4.76987446671968 NA NA differentially expressed differentially expressed NA NA in-frame YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_AKQZZPH8 -BS_3DCBDJAT PLCE1--PIPSL/PLCE1 6.95439219818185 5.07288555391086 NA 6.95439219818185 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_AKQZZPH8 -BS_3DCBDJAT ALX4--CDC42EP2 23.1728763015302 2.73731763573746 NA NA differentially expressed differentially expressed NA NA frameshift ALX4 NA CDC42EP2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_AKQZZPH8 -BS_3DCBDJAT MAML2--YAP1 4.76987446671968 3.21413289676854 NA NA differentially expressed differentially expressed NA NA in-frame MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion ARRIBA 1 PT_AKQZZPH8 -BS_3DCBDJAT PICALM--TP53AIP1/ARHGAP32 0.787217424615178 -1.25727985947186 NA -0.210298684483497 no change no change NA no change frameshift PICALM NA TP53AIP1 ARHGAP32 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_AKQZZPH8 -BS_3DCBDJAT MAML2--YAP1 4.76987446671968 3.21413289676854 NA NA differentially expressed differentially expressed NA NA frameshift MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion ARRIBA 1 PT_AKQZZPH8 -BS_3F4FQJMR QKI--ARID1B 1.34819836433665 1.97350769543857 NA NA no change no change NA NA in-frame QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_8RB7TPS2 -BS_3F4FQJMR ARID1B--PLAGL1 1.97350769543857 0.858255952722617 NA NA no change no change NA NA in-frame ARID1B NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_8RB7TPS2 -BS_3F4FQJMR MAP3K5--TAAR8/TAAR7P 0.161093290489682 -0.219358000129583 NA NA no change no change NA NA frameshift MAP3K5 NA TAAR8 TAAR7P Kinase, Kinase NA NA NA NA ARRIBA 1 PT_8RB7TPS2 -BS_3F4FQJMR ARID1B--QKI 1.97350769543857 1.34819836433665 NA NA no change no change NA NA frameshift ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_8RB7TPS2 -BS_3G3KWY18 UNC79--UNC79 -0.0984123771363708 -0.0984123771363708 NA NA no change no change NA NA frameshift UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_48N4Y6YP -BS_3H71BH6Q ROBO2--ROBO2 -0.257910227719242 -0.257910227719242 NA NA no change no change NA NA frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_AWMZ12NP -BS_3J85TTZM HIPK3--EHF/AC087783.2 5.43704280710522 -0.483864516775706 NA NA differentially expressed no change NA NA frameshift HIPK3 NA EHF AC087783.2 Kinase, Kinase TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_5ZHYHDY2 -BS_3J85TTZM PLCL1--AC016903.2/PARD3B -0.457608782405196 -0.0585149942998221 NA 3.98151020595559 no change no change NA differentially expressed frameshift PLCL1 NA AC016903.2 PARD3B Oncogene NA NA NA NA ARRIBA 1 PT_5ZHYHDY2 -BS_3J85TTZM CHIC2--AC021220.1/RNU6-746P 4.1211088793363 NA NA NA differentially expressed NA NA NA frameshift CHIC2 NA AC021220.1 RNU6-746P CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_5ZHYHDY2 -BS_3J85TTZM GTF2B--KIF18B -0.45176472910263 12.5417965584074 NA NA no change differentially expressed NA NA in-frame GTF2B NA KIF18B NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_5ZHYHDY2 -BS_3KASVCSQ ERC2--ERC2 1.89080755705488 1.89080755705488 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_T2V4X5ZW -BS_3MS8WVNR ST18--ST18 0.580638722505059 0.580638722505059 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_AP658JQV -BS_3MS8WVNR ZNF592--LINC00924/AC015574.1 2.93909332337982 -0.436027605408041 NA NA differentially expressed no change NA NA frameshift ZNF592 NA LINC00924 AC015574.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_AP658JQV -BS_3MS8WVNR KCNH1--AL590132.1 0.875393308752539 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_AP658JQV -BS_3MS8WVNR FPGT-TNNI3K--FPGT-TNNI3K 1.25752542985356 1.25752542985356 NA NA no change no change NA NA frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_AP658JQV -BS_3MS8WVNR KCNH1--AL590132.1 0.875393308752539 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_AP658JQV -BS_3MS8WVNR AL590132.1--KCNH1 NA 0.875393308752539 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_AP658JQV -BS_3MS8WVNR JAKMIP1--JAKMIP1 -0.823170257467398 -0.823170257467398 NA NA no change no change NA NA in-frame JAKMIP1 NA JAKMIP1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AP658JQV -BS_3MS8WVNR ERC2--ERC2 -0.147779886787052 -0.147779886787052 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AP658JQV -BS_3MS8WVNR KCNH1--KCNH1 0.875393308752539 0.875393308752539 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AP658JQV -BS_3MS8WVNR CSMD3--CSMD3 -0.421642548132477 -0.421642548132477 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_AP658JQV -BS_3MYEMXPQ JAK2--JAK2 4.88943909609102 4.88943909609102 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RQ21EBK9 -BS_3MYEMXPQ ST18--ST18 3.59320168161708 3.59320168161708 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RQ21EBK9 -BS_3NNQ6PSB JAK2--JAK2 3.01207993880509 3.01207993880509 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_GNKRMTQY -BS_3NWQXPQV ST18--ST18 3.36558632718554 3.36558632718554 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_0DWRY9ZX -BS_3NWQXPQV RBBP5--C1orf186 2.23154559254065 -0.265705785462165 NA NA differentially expressed no change NA NA frameshift RBBP5 NA C1orf186 NA Oncogene NA NA NA NA ARRIBA 1 PT_0DWRY9ZX -BS_3P20Q2C3 ARHGEF10--ARHGEF10 1.12671194382567 1.12671194382567 NA NA no change no change NA NA in-frame ARHGEF10 NA ARHGEF10 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_HYXSSCJ5 -BS_3P20Q2C3 KCNH1--AL590132.1 2.155859836416 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_HYXSSCJ5 -BS_3P20Q2C3 CSMD3--CSMD3 5.75885484408647 5.75885484408647 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_HYXSSCJ5 -BS_3P20Q2C3 ERC2--ERC2 2.30579033011895 2.30579033011895 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_HYXSSCJ5 -BS_3P20Q2C3 KCNH1--AL590132.1 2.155859836416 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_HYXSSCJ5 -BS_3P20Q2C3 AL590132.1--KCNH1 NA 2.155859836416 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_HYXSSCJ5 -BS_3P20Q2C3 KCNH1--KCNH1 2.155859836416 2.155859836416 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_HYXSSCJ5 -BS_3P20Q2C3 AL590132.1--KCNH1 NA 2.155859836416 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_HYXSSCJ5 -BS_3PYESPHA ERC2--ERC2 2.40883717221698 2.40883717221698 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_A594A46X -BS_3Q0GTSYH KIAA1549--BRAF 4.3646924490107 2.18915876378451 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_KXB1PJV0 -BS_3T6X4BPC FGFR1--TACC1 1.86569205686232 3.26558631231877 NA NA no change differentially expressed NA NA in-frame FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA ARRIBA 1 PT_BBHAD51D -BS_3T6X4BPC BRINP1--BRINP1 1.23480538180573 1.23480538180573 NA NA no change no change NA NA frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_BBHAD51D -BS_3T6X4BPC ERC2--ERC2 1.91763427667443 1.91763427667443 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BBHAD51D -BS_3W07B2TG MARK2--STK33 0.729603474323404 0.733370307543051 NA NA no change no change NA NA in-frame MARK2 NA STK33 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_HMY997GX -BS_3W07B2TG CDH20--CDH20 -1.7818655134958 -1.7818655134958 NA NA no change no change NA NA frameshift CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_HMY997GX -BS_3W07B2TG IGFBP7--STK32B 3.96483742686659 0.870801291941799 NA NA differentially expressed no change NA NA frameshift IGFBP7 NA STK32B NA TumorSuppressorGene, Oncogene Kinase NA NA NA ARRIBA 1 PT_HMY997GX -BS_3W07B2TG ST13--ROS1 -0.553796544883674 5.82777268752117 NA NA no change differentially expressed NA NA in-frame ST13 NA ROS1 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_HMY997GX -BS_3W07B2TG AHNAK--AC116535.2 5.02125786855031 NA NA NA differentially expressed NA NA NA frameshift AHNAK NA AC116535.2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_HMY997GX -BS_3W07B2TG BRINP1--BRINP1 0.0152681203408005 0.0152681203408005 NA NA no change no change NA NA frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_HMY997GX -BS_3X9WMZGJ MCM9--MCM9 1.37813707044024 1.37813707044024 NA NA no change no change NA NA frameshift MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_3VCS1PPF -BS_3XY76V8T CSMD3--CSMD3 1.63939172107387 1.63939172107387 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_GDDWPDMC -BS_3XY76V8T MAP4--KIF1A 0.853376179051082 0.301440370632433 NA NA no change no change NA NA frameshift MAP4 NA KIF1A NA Oncogene NA NA NA NA ARRIBA 1 PT_GDDWPDMC -BS_3XY76V8T ERC2--ERC2 0.893303772359441 0.893303772359441 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GDDWPDMC -BS_3Y0QXZQB MTAP--AC092506.1/CDK4P1 4.84204044953271 NA NA NA differentially expressed NA NA NA frameshift MTAP NA AC092506.1 CDK4P1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_K8ZV7APT -BS_401R3KV0 CREBBP--DOK5 2.39176668955086 1.11773257827142 NA NA differentially expressed no change NA NA frameshift CREBBP NA DOK5 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_MBAXTJET -BS_401R3KV0 SMG1--C16orf96 0.781942473578665 7.20082434074301 NA NA no change differentially expressed NA NA frameshift SMG1 NA C16orf96 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_MBAXTJET -BS_401R3KV0 BCAS1--RAF1 -1.13608301185825 -0.173225368601259 NA NA no change no change NA NA in-frame BCAS1 NA RAF1 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_MBAXTJET -BS_401R3KV0 RAF1--DLGAP4 -0.173225368601259 0.251822704352114 NA NA no change no change NA NA frameshift RAF1 NA DLGAP4 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_MBAXTJET -BS_40MP5BWR UBE2E2--SOX5 -0.965336318700493 6.77701670487605 NA NA no change differentially expressed NA NA frameshift UBE2E2 NA SOX5 NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_JSFBMK5V -BS_40MP5BWR ACACB--NF1 1.25872867571542 1.14501883164291 NA NA no change no change NA NA in-frame ACACB NA NF1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JSFBMK5V -BS_40MP5BWR SSPO--DDR1 3.09700592392193 4.30450855136475 NA NA differentially expressed differentially expressed NA NA in-frame SSPO NA DDR1 NA NA Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_JSFBMK5V -BS_40MP5BWR UBE2E2--SOX5/MIR920 -0.965336318700493 6.77701670487605 NA NA no change differentially expressed NA NA frameshift UBE2E2 NA SOX5 MIR920 NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_JSFBMK5V -BS_40MP5BWR RUNX1--CNTNAP2 7.9403139973535 -2.82191397549039 NA NA differentially expressed differentially expressed NA NA frameshift RUNX1 NA CNTNAP2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_JSFBMK5V -BS_42DY6WS7 KIAA1549--BRAF 4.4469625790677 2.12508155938076 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_12JTZFC2 -BS_42DY6WS7 ROBO1--FA2H/AC009132.1 4.38545732817719 0.515666647046778 NA NA differentially expressed no change NA NA frameshift ROBO1 NA FA2H AC009132.1 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_12JTZFC2 -BS_42DY6WS7 RFX4--RFX4 0.441710852488503 0.441710852488503 NA NA no change no change NA NA in-frame RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_12JTZFC2 -BS_42Y3YANN KIAA1549--BRAF 3.58320349350045 1.81499155914605 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_BDNE55YT -BS_42Y3YANN KIAA1549--BRAF 3.58320349350045 1.81499155914605 NA NA differentially expressed no change NA NA frameshift KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_BDNE55YT -BS_45J79YTF ARHGAP35--AP2S1/ARHGAP35 4.5121280455704 0.282529975239407 NA 4.5121280455704 differentially expressed no change NA differentially expressed frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_6GDPNFA6 -BS_45J79YTF MET--PTPRZ1 11.3103218377188 4.69881043444573 NA NA differentially expressed differentially expressed NA NA in-frame MET NA PTPRZ1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_6GDPNFA6 -BS_45J79YTF PTPRZ1--MET 4.69881043444573 11.3103218377188 NA NA differentially expressed differentially expressed NA NA in-frame PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_6GDPNFA6 -BS_470DYRJQ MTSS1--MTSS1 1.83852292921997 1.83852292921997 NA NA no change no change NA NA frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_0EWY6S6S -BS_470DYRJQ KIAA1549--BRAF 3.16013812458463 2.55868169515212 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_0EWY6S6S -BS_470DYRJQ ERC2--ERC2 0.229974949628067 0.229974949628067 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0EWY6S6S -BS_470DYRJQ ST18--ST18 1.10359632694947 1.10359632694947 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_0EWY6S6S -BS_470DYRJQ CYB5R4--CYB5R4 1.48461917748328 1.48461917748328 NA NA no change no change NA NA frameshift CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0EWY6S6S -BS_478TN841 FAM135B--FAM135B 1.10837788821166 1.10837788821166 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_W6AWJJK7 -BS_478TN841 ERC2--ERC2 -0.183421829904394 -0.183421829904394 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_W6AWJJK7 -BS_479S95Q6 TANC1--HTRA1 4.39847007073968 -0.0225372146611391 NA NA differentially expressed no change NA NA in-frame TANC1 NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_8V3360DR -BS_479S95Q6 HTRA1--TANC1 -0.0225372146611391 4.39847007073968 NA NA no change differentially expressed NA NA in-frame HTRA1 NA TANC1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_8V3360DR -BS_479S95Q6 FAM126A--CDK6 3.72954363188644 6.34397995692937 NA NA differentially expressed differentially expressed NA NA frameshift FAM126A NA CDK6 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_8V3360DR -BS_479S95Q6 XXYLT1--SEC22A 1.36761127146996 1.0597452053616 NA NA no change no change NA NA frameshift XXYLT1 NA SEC22A NA Oncogene NA NA NA NA ARRIBA 1 PT_8V3360DR -BS_49852ZBH KIAA1549--BRAF 3.6153571487341 1.66741954153585 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_5VAKED5F -BS_49852ZBH MYT1L--MYT1L -0.833937924842591 -0.833937924842591 NA NA no change no change NA NA frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_5VAKED5F -BS_49BQS7Z6 RFX4--RFX4 2.89565935091024 2.89565935091024 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_HNZNZ635 -BS_49BQS7Z6 CSMD3--CSMD3 3.36601187042234 3.36601187042234 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_HNZNZ635 -BS_49BQS7Z6 ACO2--MKL1 -0.761701539955673 0.853867400303679 NA NA no change no change NA NA frameshift ACO2 NA MKL1 NA NA Oncogene NA NA NA ARRIBA 1 PT_HNZNZ635 -BS_49BQS7Z6 GRK3--THOC5 NA -0.245870462033129 NA NA NA no change NA NA frameshift GRK3 NA THOC5 NA Kinase Oncogene NA NA NA ARRIBA 1 PT_HNZNZ635 -BS_49BQS7Z6 NPAS2--NPAS2 -0.402203274374439 -0.402203274374439 NA NA no change no change NA NA frameshift NPAS2 NA NPAS2 NA TumorSuppressorGene, TranscriptionFactor TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_HNZNZ635 -BS_49BQS7Z6 LMNTD1--LMNTD1 7.55098217217178 7.55098217217178 NA NA differentially expressed differentially expressed NA NA frameshift LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_HNZNZ635 -BS_49BQS7Z6 MKL1--ACO2 0.853867400303679 -0.761701539955673 NA NA no change no change NA NA frameshift MKL1 NA ACO2 NA Oncogene NA NA NA NA ARRIBA 1 PT_HNZNZ635 -BS_49CJNZ06 QKI--PRKN 1.23090402034054 NA NA NA no change NA NA NA frameshift QKI NA PRKN NA TumorSuppressorGene, CosmicCensus NA NA NA NA ARRIBA 1 PT_M9XXJ4GR -BS_49CJNZ06 MSI2--AC015813.2 1.41236533725795 NA NA NA no change NA NA NA in-frame MSI2 NA AC015813.2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M9XXJ4GR -BS_49CJNZ06 MSI2--AC015813.1 1.41236533725795 NA NA NA no change NA NA NA in-frame MSI2 NA AC015813.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M9XXJ4GR -BS_49F4RAA4 BRAF--TRG-AS1 0.773812262266101 15.8006760494219 NA NA no change differentially expressed NA NA frameshift BRAF NA TRG-AS1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_J06X17XH -BS_49F4RAA4 MBNL1--BRAF 5.37559112531502 0.773812262266101 NA NA differentially expressed no change NA NA frameshift MBNL1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_J06X17XH -BS_49F4RAA4 MBNL1--BRAF 5.37559112531502 0.773812262266101 NA NA differentially expressed no change NA NA in-frame MBNL1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_J06X17XH -BS_49FQXT2E MYT1L--MYT1L -0.549743765107898 -0.549743765107898 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E SCLT1--ADGRL3 1.26047059225594 2.75493374393765 NA NA no change differentially expressed NA NA frameshift SCLT1 NA ADGRL3 NA Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E CDKN2A--FAM71BP1/AL353753.1 2.7003445634787 167.619348063179 NA NA differentially expressed differentially expressed NA NA frameshift CDKN2A NA FAM71BP1 AL353753.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E YY1AP1--AL121899.1/TGM3 1.15335661651825 NA NA 0.435952690999929 no change NA NA no change frameshift YY1AP1 NA AL121899.1 TGM3 NA NA NA TumorSuppressorGene NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E AC084337.2--LMO2/CAPRIN1 NA 1.61593174667929 NA 1.423286247545 NA no change NA no change frameshift AC084337.2 NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E RCN1--HIPK3 2.22958974113722 4.10378842460816 NA NA differentially expressed differentially expressed NA NA frameshift RCN1 NA HIPK3 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E IPO7--HIPK3 2.46034912136839 4.10378842460816 NA NA differentially expressed differentially expressed NA NA frameshift IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E FGF6--WWC3 38.1532511908995 1.62763451402893 NA NA differentially expressed no change NA NA frameshift FGF6 NA WWC3 NA Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E CD44--WIZP1/MIR8054 3.82347151617288 8.23354064087672 NA NA differentially expressed differentially expressed NA NA frameshift CD44 NA WIZP1 MIR8054 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E BRSK2--AL078612.2 -2.26092819987393 NA NA NA differentially expressed NA NA NA frameshift BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E ERC2--ERC2 1.14052472378994 1.14052472378994 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E CDKN2A--AL353753.1 2.7003445634787 NA NA NA differentially expressed NA NA NA frameshift CDKN2A NA AL353753.1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E SLC1A2--SWAP70 0.508326477276863 2.50449242460556 NA NA no change differentially expressed NA NA frameshift SLC1A2 NA SWAP70 NA NA Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E WWC3--FGF6 1.62763451402893 38.1532511908995 NA NA no change differentially expressed NA NA frameshift WWC3 NA FGF6 NA NA Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E PPFIBP1--AC006206.2 2.08582937800502 NA NA NA differentially expressed NA NA NA frameshift PPFIBP1 NA AC006206.2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E WWC3--FGF6/C12orf4 1.62763451402893 38.1532511908995 NA 3.94489753256313 no change differentially expressed NA differentially expressed frameshift WWC3 NA FGF6 C12orf4 NA Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E TIMM10B--LMO2/CAPRIN1 1.07376051290028 1.61593174667929 NA 1.423286247545 no change no change NA no change frameshift TIMM10B NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E BRSK2--THEM7P -2.26092819987393 -0.488102983182883 NA NA differentially expressed no change NA NA frameshift BRSK2 NA THEM7P NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E HIPK3--AL078612.1 4.10378842460816 NA NA NA differentially expressed NA NA NA frameshift HIPK3 NA AL078612.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E CD44--AC124657.1/AL358944.1 3.82347151617288 NA NA NA differentially expressed NA NA NA frameshift CD44 NA AC124657.1 AL358944.1 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_49FQXT2E CD44--AC110058.1 3.82347151617288 NA NA NA differentially expressed NA NA NA frameshift CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_4A45GGSW KIAA1549--BRAF 4.28540418279215 2.07432534710027 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_QJDY4Y9P -BS_4B0BAVTX TICRR--ERG 15.9447665119334 0.252323759115303 NA NA differentially expressed no change NA NA frameshift TICRR NA ERG NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_7FZ8SE69 -BS_4B0BAVTX WNK1--EMILIN2 1.015494657704 2.68892972033244 NA NA no change differentially expressed NA NA frameshift WNK1 NA EMILIN2 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_7FZ8SE69 -BS_4B0BAVTX TRIM24--BRAF 5.7209287970633 1.8880134474259 NA NA differentially expressed no change NA NA in-frame TRIM24 NA BRAF NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_7FZ8SE69 -BS_4B0BAVTX ARNT2--AC068492.1/CXCR4 0.148475183650438 -0.411495052108292 NA 1.20638714030116 no change no change NA no change frameshift ARNT2 NA AC068492.1 CXCR4 TranscriptionFactor NA NA CosmicCensus NA ARRIBA 1 PT_7FZ8SE69 -BS_4B0BAVTX IGF1R--HNRNPM 7.4605950580233 0.678106057090441 NA NA differentially expressed no change NA NA frameshift IGF1R NA HNRNPM NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_7FZ8SE69 -BS_4B0BAVTX ATRX--AL157778.1/AL137843.1 3.47421970415005 NA NA NA differentially expressed NA NA NA frameshift ATRX NA AL157778.1 AL137843.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_7FZ8SE69 -BS_4B0BAVTX DNTTIP1--SPO11 0.607911229065868 106.607788566181 NA NA no change differentially expressed NA NA in-frame DNTTIP1 NA SPO11 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7FZ8SE69 -BS_4B0BAVTX CRK--NPC1 -1.03471142902115 0.267712488747434 NA NA no change no change NA NA frameshift CRK NA NPC1 NA Oncogene NA NA NA NA ARRIBA 1 PT_7FZ8SE69 -BS_4B0BAVTX DHRS7B--CAMKK1 0.614474286947782 -1.21285203367993 NA NA no change no change NA NA frameshift DHRS7B NA CAMKK1 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_7FZ8SE69 -BS_4B0BAVTX IGF1R--HNRNPM 7.4605950580233 0.678106057090441 NA NA differentially expressed no change NA NA in-frame IGF1R NA HNRNPM NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_7FZ8SE69 -BS_4B0BAVTX DACH2--DACH2 -0.1882081446842 -0.1882081446842 NA NA no change no change NA NA frameshift DACH2 NA DACH2 NA Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_7FZ8SE69 -BS_4B0BAVTX ERC2--ERC2 -0.906571429200747 -0.906571429200747 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7FZ8SE69 -BS_4B0BAVTX HSP90AA1--NDUFB2 -0.854678485608071 -1.2909254723977 NA NA no change no change NA NA frameshift HSP90AA1 NA NDUFB2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_7FZ8SE69 -BS_4B0BAVTX CUL2--NEBL 1.15744338471905 -1.57496024490018 NA NA no change no change NA NA frameshift CUL2 NA NEBL NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_7FZ8SE69 -BS_4B0BAVTX VPS4B--ATP8B1/RSL24D1P11 1.59691479061749 0.176124455814364 NA 5.96857886507134 no change no change NA differentially expressed frameshift VPS4B NA ATP8B1 RSL24D1P11 NA Oncogene NA NA NA ARRIBA 1 PT_7FZ8SE69 -BS_4BWB0FA0 KIAA1549--BRAF 3.93336829838858 1.08123295889003 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_EXYXBDGP -BS_4C4MZ4NT KIAA1549--BRAF 4.4206953895488 1.0670740521233 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_A9F8Y6MA -BS_4CP4T22V JAK2--JAK2 2.1995285804025 2.1995285804025 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_9HMVHQEH -BS_4D9DD103 ST18--ST18 0.381753534041345 0.381753534041345 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_9A6RPJ97 -BS_4GTESTSE KCNH1--KCNH1 2.37389011663645 2.37389011663645 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_1ZAWNGWT -BS_4GTESTSE ERC2--ERC2 0.934886748802673 0.934886748802673 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_1ZAWNGWT -BS_4GTESTSE DNAH7--DNAH7/STK17B -0.441483133704173 -0.441483133704173 NA 6.59459232120723 no change no change NA differentially expressed frameshift DNAH7 NA DNAH7 STK17B NA NA NA Kinase NA ARRIBA 1 PT_1ZAWNGWT -BS_4HQ3T2NC KIAA1549--BRAF 4.88309780934886 1.72642059144756 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_6N1QWCXE -BS_4JWBB28H PAX3--NCOA1 7.82990399075702 2.41645528213689 NA NA differentially expressed differentially expressed NA NA in-frame PAX3 NA NCOA1 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_69C7CBFW -BS_4NF35AF6 GOPC--ROS1 -0.48585220429012 3.10174658749103 NA NA no change differentially expressed NA NA in-frame GOPC NA ROS1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_FAPEH6R1 -BS_4NF35AF6 VKORC1L1--ZNF92/AC114501.3 2.19695107353989 3.05348183998408 NA NA differentially expressed differentially expressed NA NA frameshift VKORC1L1 NA ZNF92 AC114501.3 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_FAPEH6R1 -BS_4NWHYH53 C11orf95--RELA 4.53828300732576 3.8942299264604 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_Y4FN0XN1 -BS_4NWHYH53 RFX4--RFX4 2.25122929841478 2.25122929841478 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_Y4FN0XN1 -BS_4NWHYH53 RELA--C11orf95 3.8942299264604 4.53828300732576 NA NA differentially expressed differentially expressed NA NA in-frame RELA NA C11orf95 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Y4FN0XN1 -BS_4PH1MBGR ST18--ST18 3.33023240523719 3.33023240523719 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_NDVJE438 -BS_4PH1MBGR JAK2--JAK2 1.64551180765513 1.64551180765513 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_NDVJE438 -BS_4PPHAQXF ABHD2--SGMS1 3.32954875994557 0.145347166065839 NA NA differentially expressed no change NA NA in-frame ABHD2 NA SGMS1 NA Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_P5HHJJPH -BS_4PPHAQXF CDK14--PTPRZ1 1.86615207545302 5.83257671729728 NA NA no change differentially expressed NA NA frameshift CDK14 NA PTPRZ1 NA Kinase NA NA NA NA ARRIBA 1 PT_P5HHJJPH -BS_4PPHAQXF SLC12A7--TERT 1.54545889491905 1.80195245324164 NA NA no change no change NA NA frameshift SLC12A7 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA TCGAFusion ARRIBA 1 PT_P5HHJJPH -BS_4PWDGEB0 TMEM260--VRK1 -0.464447624442126 -0.100264830615095 NA NA no change no change NA NA in-frame TMEM260 NA VRK1 NA NA Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_FF0NV7ZM -BS_4PWDGEB0 EWSR1--PATZ1 0.0978771779248229 6.99302597696667 NA NA no change differentially expressed NA NA in-frame EWSR1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA STARFUSION 1 PT_FF0NV7ZM -BS_4QW2S1Q8 CDK6--SEM1 11.8161021448603 NA NA NA differentially expressed NA NA NA frameshift CDK6 NA SEM1 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 CDK6--AC004893.2 11.8161021448603 NA NA NA differentially expressed NA NA NA frameshift CDK6 NA AC004893.2 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 FOXP2--ST7/AC006326.1 0.415406457548382 0.258298366538482 NA NA no change no change NA NA frameshift FOXP2 NA ST7 AC006326.1 TranscriptionFactor TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 ST7--TNPO3 0.258298366538482 1.74522639139356 NA NA no change no change NA NA frameshift ST7 NA TNPO3 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 LNX1--KIT 0.881135383992749 0.451536983976889 NA NA no change no change NA NA frameshift LNX1 NA KIT NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 ST7--CAV2 0.258298366538482 0.525544667271661 NA NA no change no change NA NA frameshift ST7 NA CAV2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 PDGFC--PRDM5 3.72105701816914 4.80672932073705 NA NA differentially expressed differentially expressed NA NA frameshift PDGFC NA PRDM5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 MET--GCK 14.5303902303343 -0.552938346181626 NA NA differentially expressed no change NA NA in-frame MET NA GCK NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 GRID1--CCAR1 0.753606295961801 0.0999823876854951 NA NA no change no change NA NA in-frame GRID1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 TRRAP--RABGEF1 3.25560326761459 0.337533976249551 NA NA differentially expressed no change NA NA frameshift TRRAP NA RABGEF1 NA Kinase, CosmicCensus, Kinase NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 MET--CAMK2B 14.5303902303343 -0.10301693865396 NA NA differentially expressed no change NA NA in-frame MET NA CAMK2B NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 NUP98--PRMT3/HMGB1P40 0.991508757206233 1.07157913121874 NA NA no change no change NA NA frameshift NUP98 NA PRMT3 HMGB1P40 TumorSuppressorGene, CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 FAM155A--SPRY2 -0.16741921766502 1.82911314374198 NA NA no change no change NA NA frameshift FAM155A NA SPRY2 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4QW2S1Q8 GRID1--CCAR1 0.753606295961801 0.0999823876854951 NA NA no change no change NA NA frameshift GRID1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_4T0HPZDC PAPPA2--PAPPA2 12.9786331723958 12.9786331723958 NA NA differentially expressed differentially expressed NA NA frameshift PAPPA2 NA PAPPA2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_06H29FCG -BS_4T0HPZDC RFX4--RFX4 1.97217394040481 1.97217394040481 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_06H29FCG -BS_4W1DBAN4 ERC2--ERC2 3.22011779907409 3.22011779907409 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_5D3AVPCW -BS_4W1DBAN4 PRDM2--PRDM2 0.7768161197343 0.7768161197343 NA NA no change no change NA NA frameshift PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_5D3AVPCW -BS_4W1DBAN4 CSMD3--CSMD3 3.06280948700061 3.06280948700061 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_5D3AVPCW -BS_4W68NV3M JAK2--JAK2 1.8097109735987 1.8097109735987 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_D215EQAP -BS_4Y6BCYK5 KIAA1549--BRAF 3.8759063500538 1.08475764845914 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_N9SG16EC -BS_51RA1PGE UBE2D2--DPYSL3/JAKMIP2-AS1 -0.398585560211234 0.815724752429675 NA 1.93631854927032 no change no change NA no change frameshift UBE2D2 NA DPYSL3 JAKMIP2-AS1 Oncogene NA NA NA NA ARRIBA 1 PT_HMF8J4EG -BS_51RA1PGE ROBO1--LINC02008 3.25419685139543 NA NA NA differentially expressed NA NA NA frameshift ROBO1 NA LINC02008 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_HMF8J4EG -BS_51RA1PGE ARHGAP35--AP2S1/ARHGAP35 1.72241056866125 0.550727008940252 NA 1.72241056866125 no change no change NA no change frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_HMF8J4EG -BS_51RA1PGE UBE2D2--CDC23 -0.398585560211234 1.45624135832943 NA NA no change no change NA NA frameshift UBE2D2 NA CDC23 NA Oncogene NA NA NA NA ARRIBA 1 PT_HMF8J4EG -BS_51RA1PGE UBE2D2--CDC23 -0.398585560211234 1.45624135832943 NA NA no change no change NA NA in-frame UBE2D2 NA CDC23 NA Oncogene NA NA NA NA ARRIBA 1 PT_HMF8J4EG -BS_52426AMF KIAA1549--BRAF 3.36631672588848 2.26831363466005 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_3HRS5CWF -BS_52426AMF USH2A--USH2A/ESRRG 1.01762729972789 1.01762729972789 NA 3.15389592112604 no change no change NA differentially expressed frameshift USH2A NA USH2A ESRRG NA NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_3HRS5CWF -BS_52426AMF ERC2--ERC2 0.130994270887932 0.130994270887932 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3HRS5CWF -BS_52C576HH ZCCHC8--ROS1 0.000386645338917881 3.13279079831004 NA NA no change differentially expressed NA NA in-frame ZCCHC8 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_KFYJBQB8 -BS_52DAPP1Y FAM135B--FAM135B 1.28649026087177 1.28649026087177 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_WYF217NZ -BS_52DAPP1Y KIAA1549--BRAF 5.11139081784326 2.28517195905204 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_WYF217NZ -BS_53GQKVEX KIAA1549--BRAF 4.14008614751619 0.936992729332076 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_GQZ84ACS -BS_53M8PP88 RFX4--RFX4 2.89471159922227 2.89471159922227 NA NA differentially expressed differentially expressed NA NA in-frame RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_NPETR8RY -BS_55P8HPYD PFKFB3--ZMIZ1 1.74240659080767 4.00918909753136 NA NA no change differentially expressed NA NA in-frame PFKFB3 NA ZMIZ1 NA NA Oncogene NA NA NA ARRIBA 1 PT_Q25V9Y6M -BS_55P8HPYD KIAA1549--BRAF 5.19798467343819 1.96317248458175 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_Q25V9Y6M -BS_58YXHGAJ SMAP1--AL008729.1 0.871863541495761 NA NA NA no change NA NA NA frameshift SMAP1 NA AL008729.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_G4N67N0D -BS_58YXHGAJ TBPL1--HBS1L 0.129896131439085 0.303696301605903 NA NA no change no change NA NA in-frame TBPL1 NA HBS1L NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_G4N67N0D -BS_58YXHGAJ TBPL1--HBS1L 0.129896131439085 0.303696301605903 NA NA no change no change NA NA frameshift TBPL1 NA HBS1L NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_G4N67N0D -BS_58YXHGAJ ARID1B--AL390955.2/AL390955.1 2.03584666823131 NA NA NA differentially expressed NA NA NA frameshift ARID1B NA AL390955.2 AL390955.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_G4N67N0D -BS_58YXHGAJ JARID2--CAGE1 -0.331881199756195 26.3422117936935 NA NA no change differentially expressed NA NA frameshift JARID2 NA CAGE1 NA NA Oncogene NA NA NA ARRIBA 1 PT_G4N67N0D -BS_58YXHGAJ TBPL1--AL353596.1 0.129896131439085 NA NA NA no change NA NA NA frameshift TBPL1 NA AL353596.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_G4N67N0D -BS_58YXHGAJ SENP6--ZSCAN23 -0.390626400844032 2.5646892152652 NA NA no change differentially expressed NA NA frameshift SENP6 NA ZSCAN23 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_G4N67N0D -BS_58YXHGAJ TTBK1--AL008628.1/PSMB1 0.130860477771676 NA NA 0.644143871297847 no change NA NA no change frameshift TTBK1 NA AL008628.1 PSMB1 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_G4N67N0D -BS_58YXHGAJ RPS6KA2--SNORD65/AL365503.1 -0.851061010375074 NA NA NA no change NA NA NA frameshift RPS6KA2 NA SNORD65 AL365503.1 TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_G4N67N0D -BS_58YXHGAJ FOXO3--AL589740.1 0.380404379977976 NA NA NA no change NA NA NA frameshift FOXO3 NA AL589740.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_G4N67N0D -BS_58YXHGAJ DST--AL357080.1/AL355596.1 -1.37667474256669 NA NA NA no change NA NA NA frameshift DST NA AL357080.1 AL355596.1 Oncogene NA NA NA NA ARRIBA 1 PT_G4N67N0D -BS_58YXHGAJ SMAP1--TBC1D7 0.871863541495761 0.669652551215988 NA NA no change no change NA NA frameshift SMAP1 NA TBC1D7 NA Oncogene NA NA NA NA ARRIBA 1 PT_G4N67N0D -BS_58YXHGAJ JARID2--CAGE1 -0.331881199756195 26.3422117936935 NA NA no change differentially expressed NA NA in-frame JARID2 NA CAGE1 NA NA Oncogene NA NA NA STARFUSION 1 PT_G4N67N0D -BS_58YXHGAJ EZR--MDN1 0.743050028134091 -2.4854807111831 NA NA no change differentially expressed NA NA frameshift EZR NA MDN1 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_G4N67N0D -BS_58YXHGAJ SENP6--RNU2-45P/ZSCAN23 -0.390626400844032 -0.0917092771760362 NA 2.5646892152652 no change no change NA differentially expressed frameshift SENP6 NA RNU2-45P ZSCAN23 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_G4N67N0D -BS_58YXHGAJ MYO6--SRSF3/MIR3925 -1.52245102594639 2.92791323477751 NA NA no change differentially expressed NA NA frameshift MYO6 NA SRSF3 MIR3925 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_G4N67N0D -BS_593HEWBF BRAF--AC002456.2 2.27030408702492 -1.91307187413938 NA NA differentially expressed no change NA NA frameshift BRAF NA AC002456.2 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_DB800CE1 -BS_593HEWBF DGKI--LRRC4 1.60357604798287 0.688187069079458 NA NA no change no change NA NA frameshift DGKI NA LRRC4 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_DB800CE1 -BS_593HEWBF BRAF--AC006153.1 2.27030408702492 NA NA NA differentially expressed NA NA NA frameshift BRAF NA AC006153.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_DB800CE1 -BS_593HEWBF TNS3--BRAF 2.10419035236569 2.27030408702492 NA NA differentially expressed differentially expressed NA NA in-frame TNS3 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_DB800CE1 -BS_593HEWBF NOD1--AC009500.1/AC004852.2 2.53267550300801 NA NA NA differentially expressed NA NA NA frameshift NOD1 NA AC009500.1 AC004852.2 Oncogene NA NA NA NA ARRIBA 1 PT_DB800CE1 -BS_593HEWBF AHCYL2--ZNF746 5.50084022548655 1.36782824027968 NA NA differentially expressed no change NA NA in-frame AHCYL2 NA ZNF746 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_DB800CE1 -BS_593HEWBF BRAF--CLDN12 2.27030408702492 0.487220473399658 NA NA differentially expressed no change NA NA frameshift BRAF NA CLDN12 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_DB800CE1 -BS_593HEWBF BRAF--CDK14 2.27030408702492 1.46533058512729 NA NA differentially expressed no change NA NA frameshift BRAF NA CDK14 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase NA NA NA ARRIBA 1 PT_DB800CE1 -BS_593HEWBF SND1--DGKI/CREB3L2 0.850824686732481 1.60357604798287 NA 5.83253567966169 no change no change NA differentially expressed frameshift SND1 NA DGKI CREB3L2 CosmicCensus NA NA CosmicCensus, Oncogene, TranscriptionFactor NA ARRIBA 1 PT_DB800CE1 -BS_59ZJWJTF LOXL2--CTNNA1 12.479072815972 2.99703869534713 NA NA differentially expressed differentially expressed NA NA frameshift LOXL2 NA CTNNA1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3AWKWXEV -BS_5CTVXVRX ZNF552--AC007228.1 1.72461033891104 NA NA NA no change NA NA NA frameshift ZNF552 NA AC007228.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DW2XRPC9 -BS_5CTVXVRX TCF4--TCP10 0.913483159089131 13.1684842011353 NA NA no change differentially expressed NA NA in-frame TCF4 NA TCP10 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DW2XRPC9 -BS_5CTVXVRX GAS2--RB1CC1 9.19127993595809 0.441428473687406 NA NA differentially expressed no change NA NA frameshift GAS2 NA RB1CC1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_DW2XRPC9 -BS_5CTVXVRX PRKAA1--NUSAP1 1.874178540739 13.6377415331856 NA NA no change differentially expressed NA NA frameshift PRKAA1 NA NUSAP1 NA TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_DW2XRPC9 -BS_5CTVXVRX PRKAA1--OIP5 1.874178540739 12.1483056720565 NA NA no change differentially expressed NA NA frameshift PRKAA1 NA OIP5 NA TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_DW2XRPC9 -BS_5K3R0F5D KCNH1--AL590132.1 1.45845659013808 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_A0F23R7E -BS_5K3R0F5D AL590132.1--KCNH1 NA 1.45845659013808 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_A0F23R7E -BS_5K3R0F5D KCNH1--AL590132.1 1.45845659013808 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_A0F23R7E -BS_5K3R0F5D KCNH1--KCNH1 1.45845659013808 1.45845659013808 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_A0F23R7E -BS_5K3R0F5D ERC2--ERC2 2.00122342518623 2.00122342518623 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_A0F23R7E -BS_5K3R0F5D AL590132.1--KCNH1 NA 1.45845659013808 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_A0F23R7E -BS_5NWDARXG PLEKHA8--PLEKHA8 1.11028713441949 1.11028713441949 NA NA no change no change NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_EEKE0V9T -BS_5NWDARXG RFX4--RFX4 1.52170464120797 1.52170464120797 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_EEKE0V9T -BS_5NWDARXG CSMD3--CSMD3 1.35786652754775 1.35786652754775 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_EEKE0V9T -BS_5P3CZQV8 NF1--MYO1D 0.103940331026975 0.776953589093701 NA NA no change no change NA NA frameshift NF1 NA MYO1D NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_MXASQ2GW -BS_5PEFNDCY WRN--WRN 1.29456909530623 1.29456909530623 NA NA no change no change NA NA frameshift WRN NA WRN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_VQDNSYXM -BS_5PEFNDCY PLCE1--PIPSL/PLCE1 3.82336271449026 2.67418563276307 NA 3.82336271449026 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_VQDNSYXM -BS_5PEFNDCY MTSS1--MTSS1 2.40955202655797 2.40955202655797 NA NA differentially expressed differentially expressed NA NA frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_VQDNSYXM -BS_5PEFNDCY KIAA1549--BRAF 4.18651944297626 2.28220689072008 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_VQDNSYXM -BS_5PEFNDCY PLEKHA8--PLEKHA8 1.49951778361798 1.49951778361798 NA NA no change no change NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_VQDNSYXM -BS_5PEFNDCY ERC2--ERC2 0.478983799058925 0.478983799058925 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_VQDNSYXM -BS_5PEFNDCY ST18--ST18 0.179100984282432 0.179100984282432 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VQDNSYXM -BS_5PEFNDCY RFX4--RFX4 1.39666693938505 1.39666693938505 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VQDNSYXM -BS_5PJCHF6V CYB5R4--CYB5R4 2.35006330592135 2.35006330592135 NA NA differentially expressed differentially expressed NA NA frameshift CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_Q90R6M3E -BS_5PJCHF6V ARHGAP42--SORL1/RNU6-256P 1.94653340612641 -0.807043734401641 NA NA no change no change NA NA frameshift ARHGAP42 NA SORL1 RNU6-256P NA Oncogene NA NA NA ARRIBA 1 PT_Q90R6M3E -BS_5PJCHF6V ROBO3--SORL1/RNU6-256P 0.756215473907498 -0.807043734401641 NA NA no change no change NA NA frameshift ROBO3 NA SORL1 RNU6-256P NA Oncogene NA NA NA ARRIBA 1 PT_Q90R6M3E -BS_5PJCHF6V MRE11--AP001804.1 NA NA NA NA NA NA NA NA frameshift MRE11 NA AP001804.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_Q90R6M3E -BS_5PJCHF6V JAK2--JAK2 2.36500884534332 2.36500884534332 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_Q90R6M3E -BS_5PJCHF6V ST18--ST18 3.54792712563537 3.54792712563537 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_Q90R6M3E -BS_5PV5N4HQ KIAA1549--BRAF 5.29531862047146 1.88082575995459 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_YRMG61G8 -BS_5VPM0F36 USP15--ACVRL1 1.67304120617937 1.034866933872 NA NA no change no change NA NA frameshift USP15 NA ACVRL1 NA Oncogene Kinase NA NA NA ARRIBA 1 PT_HGM20MW7 -BS_5VPM0F36 DBX2--DCTN2 4.1392615663892 0.634101217519831 NA NA differentially expressed no change NA NA frameshift DBX2 NA DCTN2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_HGM20MW7 -BS_5VQP0E6K PAPSS1--DKK2 3.70062699181856 20.1281573943202 NA NA differentially expressed differentially expressed NA NA frameshift PAPSS1 NA DKK2 NA Kinase NA NA NA NA ARRIBA 1 PT_H6E09982 -BS_5YJEPPTP EPHA5--EPHA5 2.27323723753287 2.27323723753287 NA NA differentially expressed differentially expressed NA NA in-frame EPHA5 NA EPHA5 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_RFF7MKTC -BS_5YJEPPTP CSMD3--CSMD3 3.15084812934018 3.15084812934018 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_RFF7MKTC -BS_5YJEPPTP KIAA1549--BRAF 4.16630257839045 1.6753839054886 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_RFF7MKTC -BS_60K3EQ9S ERC2--ERC2 1.56106573799078 1.56106573799078 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2D1KGV99 -BS_60K3EQ9S AL590132.1--KCNH1 NA 1.13957961623969 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_2D1KGV99 -BS_60K3EQ9S KCNH1--AL590132.1 1.13957961623969 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_2D1KGV99 -BS_60K3EQ9S CSMD3--CSMD3 1.2624507366126 1.2624507366126 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2D1KGV99 -BS_60K3EQ9S KCNH1--KCNH1 1.13957961623969 1.13957961623969 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2D1KGV99 -BS_61E80SD6 JAK2--JAK2 4.04401328053356 4.04401328053356 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_39HBKSGG -BS_61E80SD6 PLCE1--PIPSL/PLCE1 2.57843745671245 6.27658559340273 NA 2.57843745671245 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_39HBKSGG -BS_61E80SD6 RNF10--SIRT4 0.316712578136637 0.7711929235954 NA NA no change no change NA NA frameshift RNF10 NA SIRT4 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_39HBKSGG -BS_61E80SD6 RNF10--SIRT4 0.316712578136637 0.7711929235954 NA NA no change no change NA NA in-frame RNF10 NA SIRT4 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_39HBKSGG -BS_61E80SD6 KCNN1--ZNF729/AC011494.1 0.263720893168801 83.617561934771 NA NA no change differentially expressed NA NA frameshift KCNN1 NA ZNF729 AC011494.1 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_39HBKSGG -BS_61E80SD6 AP3D1--KLF2/AC020917.3 0.0293351907265983 0.626019513341465 NA NA no change no change NA NA frameshift AP3D1 NA KLF2 AC020917.3 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_39HBKSGG -BS_66ABA973 KIAA1549--BRAF 4.76015522655213 2.10255647412996 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_0K0DPVF6 -BS_66HQ3E4Z KIAA1549--BRAF 5.39297326608578 1.52428246004081 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_AC5SD9AC -BS_67Z63A2K KCNH1--KCNH1 1.33936226198201 1.33936226198201 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NYBH025T -BS_67Z63A2K KCNH1--AL590132.1 1.33936226198201 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_NYBH025T -BS_67Z63A2K AL590132.1--KCNH1 NA 1.33936226198201 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_NYBH025T -BS_67Z63A2K KCNH1--AL590132.1 1.33936226198201 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_NYBH025T -BS_67Z63A2K AL590132.1--KCNH1 NA 1.33936226198201 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_NYBH025T -BS_680K119G ERC2--ERC2 1.14052472378994 1.14052472378994 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_44HPG5YT -BS_680K119G CSMD3--CSMD3 0.943275994793565 0.943275994793565 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_44HPG5YT -BS_680K119G AL590132.1--KCNH1 NA 1.22123530658558 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_44HPG5YT -BS_680K119G KCNH1--KCNH1 1.22123530658558 1.22123530658558 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_44HPG5YT -BS_680K119G KCNH1--AL590132.1 1.22123530658558 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_44HPG5YT -BS_680K119G KCNH1--AL590132.1 1.22123530658558 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_44HPG5YT -BS_680K119G AL590132.1--KCNH1 NA 1.22123530658558 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_44HPG5YT -BS_685DACMS CHFR--CHFR 0.387275840360831 0.387275840360831 NA NA no change no change NA NA frameshift CHFR NA CHFR NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_7PXN3B4J -BS_685DACMS GRK4--TMEM50B -0.153259318035031 -1.9361975292492 NA NA no change no change NA NA frameshift GRK4 NA TMEM50B NA Kinase NA NA NA NA ARRIBA 1 PT_7PXN3B4J -BS_68KX6A42 OSBPL3--AC005487.1/AC002487.1 2.44513759995731 NA NA NA differentially expressed NA NA NA frameshift OSBPL3 NA AC005487.1 AC002487.1 Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 AHCYL2--DGKB 0.106047098190238 -0.559376118430487 NA NA no change no change NA NA frameshift AHCYL2 NA DGKB NA NA Kinase NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 EXOC4--PAXBP1P1/DPP6 3.01067193663707 NA NA -0.0102463069327767 differentially expressed NA NA no change frameshift EXOC4 NA PAXBP1P1 DPP6 Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 CDK14--THSD7A 0.265744891037305 3.69033745956168 NA NA no change differentially expressed NA NA frameshift CDK14 NA THSD7A NA Kinase NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 JAZF1--AC091705.1/AC005165.1 1.93990729908653 NA NA NA no change NA NA NA frameshift JAZF1 NA AC091705.1 AC005165.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 ABCB1--LINC01392/AC073901.1 0.305712320673931 5.67783752994618 NA NA no change differentially expressed NA NA frameshift ABCB1 NA LINC01392 AC073901.1 Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 AMPH--CFTR -0.423165655047774 0.187948043469921 NA NA no change no change NA NA frameshift AMPH NA CFTR NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 CAPZA2--ABCB1 2.11186926611552 0.305712320673931 NA NA differentially expressed no change NA NA frameshift CAPZA2 NA ABCB1 NA NA Oncogene NA NA TCGAFusion ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 KIAA1147--TRGV8 -0.346863089767241 8.57861363704236 NA NA no change differentially expressed NA NA frameshift KIAA1147 NA TRGV8 NA Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 CHD2--AC091078.1 1.72111281956675 NA NA NA no change NA NA NA frameshift CHD2 NA AC091078.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 MARCH6--TERT -0.800468274304093 3.30166949456583 NA NA no change differentially expressed NA NA frameshift MARCH6 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 ADCK2--LINC01003/AC104843.2 2.33785725077247 2.65034155191863 NA NA differentially expressed differentially expressed NA NA frameshift ADCK2 NA LINC01003 AC104843.2 Kinase NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 GNA12--NXPH1 1.46311673578503 3.58864176635001 NA NA no change differentially expressed NA NA in-frame GNA12 NA NXPH1 NA Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 PIAS1--AC091912.1/LINC02226 1.68114964926783 NA NA NA no change NA NA NA frameshift PIAS1 NA AC091912.1 LINC02226 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 MET--MET 11.1775292156991 11.1775292156991 NA NA differentially expressed differentially expressed NA NA in-frame MET NA MET NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 GRID2IP--TERT 0.189338285009191 3.30166949456583 NA NA no change differentially expressed NA NA frameshift GRID2IP NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 DGKB--CALM1P2/AC073347.1 -0.559376118430487 -0.117069205189829 NA NA no change no change NA NA frameshift DGKB NA CALM1P2 AC073347.1 Kinase NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 VPS41--DGKB 1.36988989039353 -0.559376118430487 NA NA no change no change NA NA frameshift VPS41 NA DGKB NA NA Kinase NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 PTPN12--CALN1 2.24470614008479 -1.29446674506907 NA NA differentially expressed no change NA NA frameshift PTPN12 NA CALN1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 KIAA1147--TRGV7 -0.346863089767241 7.38872400525628 NA NA no change differentially expressed NA NA frameshift KIAA1147 NA TRGV7 NA Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 CUX1--AC073136.1 0.455056710978962 NA NA NA no change NA NA NA frameshift CUX1 NA AC073136.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 CUX1--AC073136.1/AC073136.2 0.455056710978962 NA NA NA no change NA NA NA frameshift CUX1 NA AC073136.1 AC073136.2 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 SSBP1--CADPS2 2.11916272475531 -0.571847246088688 NA NA differentially expressed no change NA NA in-frame SSBP1 NA CADPS2 NA NA Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 PIAS1--SENP8 1.68114964926783 7.19458282259413 NA NA no change differentially expressed NA NA in-frame PIAS1 NA SENP8 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 ST7--EEF1A1P28/AC002127.2 0.693273102897807 1.40243399216158 NA -0.0475448513883556 no change no change NA no change frameshift ST7 NA EEF1A1P28 AC002127.2 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 ZSCAN21--ST7-OT4 1.49615690742851 0.0548626115608093 NA NA no change no change NA NA frameshift ZSCAN21 NA ST7-OT4 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 IGF1R--AC091941.1/AC091912.2 6.65275541381753 NA NA NA differentially expressed NA NA NA frameshift IGF1R NA AC091941.1 AC091912.2 Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 SLC29A4--ZNF735 -0.410470821937626 120.350411246089 NA NA no change differentially expressed NA NA in-frame SLC29A4 NA ZNF735 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 CCDC136--RNA5SP250/AC104843.1 -0.0236702768158832 NA NA NA no change NA NA NA frameshift CCDC136 NA RNA5SP250 AC104843.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 MDH2--C7orf65/HUS1 1.62764616036815 -0.469881962216695 NA 2.39215768373847 no change no change NA differentially expressed frameshift MDH2 NA C7orf65 HUS1 NA NA NA Oncogene NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 GNA12--STARD3NL 1.46311673578503 2.07403982766862 NA NA no change differentially expressed NA NA frameshift GNA12 NA STARD3NL NA Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 CREB3L2--NXPH1/AC009500.1 3.18141649602605 3.58864176635001 NA NA differentially expressed differentially expressed NA NA frameshift CREB3L2 NA NXPH1 AC009500.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 ZNF212--SLC29A4 1.785264824171 -0.410470821937626 NA NA no change no change NA NA frameshift ZNF212 NA SLC29A4 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 KMT2C--SFRP4/STARD3NL 1.27899555577542 3.93095561430068 NA 2.07403982766862 no change differentially expressed NA differentially expressed frameshift KMT2C NA SFRP4 STARD3NL TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 BRAF--FOXK1 1.40251569652281 1.79354113115153 NA NA no change no change NA NA frameshift BRAF NA FOXK1 NA Kinase, CosmicCensus, Oncogene, Kinase TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 MPP6--CNTNAP2 -0.140039492134722 -1.32260466797957 NA NA no change no change NA NA frameshift MPP6 NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 H2AFV--DGKB 3.08870812771352 -0.559376118430487 NA NA differentially expressed no change NA NA frameshift H2AFV NA DGKB NA NA Kinase NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 JAZF1--AC005165.1 1.93990729908653 NA NA NA no change NA NA NA frameshift JAZF1 NA AC005165.1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 PTPRN2--ZNF786 -0.456361365247457 2.22119322799995 NA NA no change differentially expressed NA NA frameshift PTPRN2 NA ZNF786 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 GLI3--AC092013.1/SOCS5P1 2.30949137958329 -0.701550431212421 NA -0.0747119177254645 differentially expressed no change NA no change frameshift GLI3 NA AC092013.1 SOCS5P1 Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 NUP205--LINC01510/MET 1.91825719459156 -0.260400966738816 NA 11.1775292156991 no change no change NA differentially expressed frameshift NUP205 NA LINC01510 MET NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 NUP205--STK17A 1.91825719459156 4.81180058502878 NA NA no change differentially expressed NA NA frameshift NUP205 NA STK17A NA NA Kinase NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 NXPH1--SRPK2 3.58864176635001 0.78725562604958 NA NA differentially expressed no change NA NA frameshift NXPH1 NA SRPK2 NA NA Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 KIAA1549--TNRC18 3.64713423981507 1.05937987438076 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA TNRC18 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 KMT2C--CALCR 1.27899555577542 -0.235955194496471 NA NA no change no change NA NA frameshift KMT2C NA CALCR NA TumorSuppressorGene, CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 IGF1R--FAM169B 6.65275541381753 2.33707631339743 NA NA differentially expressed differentially expressed NA NA frameshift IGF1R NA FAM169B NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 IKZF1--CNTNAP2 4.93510161167235 -1.32260466797957 NA NA differentially expressed no change NA NA frameshift IKZF1 NA CNTNAP2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 USP22--PTPRJ -0.198768064982749 2.69198873092009 NA NA no change differentially expressed NA NA frameshift USP22 NA PTPRJ NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 IKZF1--CFAP69 4.93510161167235 -0.26300129091769 NA NA differentially expressed no change NA NA frameshift IKZF1 NA CFAP69 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 SLC26A4--MET 3.49514897344647 11.1775292156991 NA NA differentially expressed differentially expressed NA NA frameshift SLC26A4 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 STK17A--MYL10/CUX1 4.81180058502878 -0.254972929819628 NA 0.455056710978962 differentially expressed no change NA no change frameshift STK17A NA MYL10 CUX1 Kinase NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 IGF1R--RNU1-76P/AC091941.1 6.65275541381753 NA NA NA differentially expressed NA NA NA frameshift IGF1R NA RNU1-76P AC091941.1 Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 PTPRN2--GNA12 -0.456361365247457 1.46311673578503 NA NA no change no change NA NA in-frame PTPRN2 NA GNA12 NA NA Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 STK17A--RPL6P21/DGKB 4.81180058502878 NA NA -0.559376118430487 differentially expressed NA NA no change frameshift STK17A NA RPL6P21 DGKB Kinase NA NA Kinase NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 HIP1--NOG/C17orf67 2.5724568144186 -0.445881341062263 NA -0.0346183645000925 differentially expressed no change NA no change frameshift HIP1 NA NOG C17orf67 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 CHD2--TBC1D2B 1.72111281956675 2.16229705324577 NA NA no change differentially expressed NA NA in-frame CHD2 NA TBC1D2B NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 CNTNAP2--DYNC1I1 -1.32260466797957 -1.25091413030053 NA NA no change no change NA NA frameshift CNTNAP2 NA DYNC1I1 NA TumorSuppressorGene, CosmicCensus NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 PIAS1--MARCH6 1.68114964926783 -0.800468274304093 NA NA no change no change NA NA in-frame PIAS1 NA MARCH6 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 PTPRN2--ZNF786 -0.456361365247457 2.22119322799995 NA NA no change differentially expressed NA NA in-frame PTPRN2 NA ZNF786 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 HGF--NPM1P14/AC002463.1 3.75733389641823 0.642016684078439 NA NA differentially expressed no change NA NA frameshift HGF NA NPM1P14 AC002463.1 Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 RNF216--KMT2E 2.55724427904619 0.805427147953998 NA NA differentially expressed no change NA NA frameshift RNF216 NA KMT2E NA Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 SEMA3C--SHH 2.31305404178331 2.54423901428369 NA NA differentially expressed differentially expressed NA NA frameshift SEMA3C NA SHH NA NA Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 IKZF1--GALNT17 4.93510161167235 NA NA NA differentially expressed NA NA NA frameshift IKZF1 NA GALNT17 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 KIAA1549--TNRC18 3.64713423981507 1.05937987438076 NA NA differentially expressed no change NA NA frameshift KIAA1549 NA TNRC18 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 IKZF1--FOXK1 4.93510161167235 1.79354113115153 NA NA differentially expressed no change NA NA frameshift IKZF1 NA FOXK1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 ZSCAN21--ST7 1.49615690742851 0.693273102897807 NA NA no change no change NA NA frameshift ZSCAN21 NA ST7 NA TranscriptionFactor TumorSuppressorGene NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 IKZF1--AC004830.1 4.93510161167235 NA NA NA differentially expressed NA NA NA frameshift IKZF1 NA AC004830.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 IKZF1--CNTNAP2 4.93510161167235 -1.32260466797957 NA NA differentially expressed no change NA NA in-frame IKZF1 NA CNTNAP2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 DBNL--DGKB 2.70198050396378 -0.559376118430487 NA NA differentially expressed no change NA NA frameshift DBNL NA DGKB NA NA Kinase NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 CUX1--NUPR2/AC006970.1 0.455056710978962 NA NA NA no change NA NA NA frameshift CUX1 NA NUPR2 AC006970.1 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 HIPK2--ZNF804B -0.466827070149206 0.430562027546509 NA NA no change no change NA NA frameshift HIPK2 NA ZNF804B NA Kinase, TumorSuppressorGene, Oncogene, Kinase TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 SCFD2--IGFBP7 3.4135494757454 3.38517215778193 NA NA differentially expressed differentially expressed NA NA in-frame SCFD2 NA IGFBP7 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 PTPRN2--GNA12 -0.456361365247457 1.46311673578503 NA NA no change no change NA NA frameshift PTPRN2 NA GNA12 NA NA Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 SCFD2--IGFBP7 3.4135494757454 3.38517215778193 NA NA differentially expressed differentially expressed NA NA frameshift SCFD2 NA IGFBP7 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 HOPX--SPINK2 -0.840043031098931 0.347421248121977 NA NA no change no change NA NA frameshift HOPX NA SPINK2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 ST7--RNU6-1103P/MPP6 0.693273102897807 NA NA -0.140039492134722 no change NA NA no change frameshift ST7 NA RNU6-1103P MPP6 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 ST7--ZNF3 0.693273102897807 2.59074382613144 NA NA no change differentially expressed NA NA in-frame ST7 NA ZNF3 NA TumorSuppressorGene TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_68KX6A42 MAD1L1--AC092100.1/Y_RNA 0.506311098493657 NA NA -0.162236315085263 no change NA NA no change frameshift MAD1L1 NA AC092100.1 Y_RNA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 -BS_699TN5RN ERC2--ERC2 0.48129917599406 0.48129917599406 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_JWW33RTB -BS_6DCSD5Y6 MDFIC--ST7 11.3909554752578 4.80906422685076 NA NA differentially expressed differentially expressed NA NA frameshift MDFIC NA ST7 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_4YWZ538V -BS_6DCSD5Y6 ST7--CPED1 4.80906422685076 7.42232534093731 NA NA differentially expressed differentially expressed NA NA frameshift ST7 NA CPED1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_4YWZ538V -BS_6DCSD5Y6 GNAS--PMEPA1 0.278185355453925 2.63654902726142 NA NA no change differentially expressed NA NA frameshift GNAS NA PMEPA1 NA CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_4YWZ538V -BS_6DCSD5Y6 ATP9A--PMEPA1 -0.361131443028112 2.63654902726142 NA NA no change differentially expressed NA NA frameshift ATP9A NA PMEPA1 NA NA Oncogene NA NA NA ARRIBA 1 PT_4YWZ538V -BS_6DCSD5Y6 TSPAN12--MET/CAPZA2 16.9166431867035 12.480730303402 NA -0.109114763795844 differentially expressed differentially expressed NA no change frameshift TSPAN12 NA MET CAPZA2 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_4YWZ538V -BS_6DCSD5Y6 TSPAN12--MET 16.9166431867035 12.480730303402 NA NA differentially expressed differentially expressed NA NA in-frame TSPAN12 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_4YWZ538V -BS_6DCSD5Y6 ST7--CTTNBP2 4.80906422685076 6.06964331817141 NA NA differentially expressed differentially expressed NA NA in-frame ST7 NA CTTNBP2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_4YWZ538V -BS_6DCSD5Y6 GNAS--TOX2 0.278185355453925 1.26008673148482 NA NA no change no change NA NA frameshift GNAS NA TOX2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_4YWZ538V -BS_6DCSD5Y6 GNAS--KCNG1/AL121785.1 0.278185355453925 2.30054077873269 NA NA no change differentially expressed NA NA frameshift GNAS NA KCNG1 AL121785.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_4YWZ538V -BS_6H1C1ME9 THADA--THADA 1.17741961592589 1.17741961592589 NA NA no change no change NA NA in-frame THADA NA THADA NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_1MW98VR1 -BS_6H1C1ME9 CSMD3--CSMD3 1.01885988525477 1.01885988525477 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_1MW98VR1 -BS_6H1C1ME9 ECT2L--ECT2L 5.47487446607479 5.47487446607479 NA NA differentially expressed differentially expressed NA NA frameshift ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_1MW98VR1 -BS_6HTK4YJP SLC12A7--ZBTB16 4.24614999856855 2.85857518792409 NA NA differentially expressed differentially expressed NA NA frameshift SLC12A7 NA ZBTB16 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_7F3ZPZB7 -BS_6HTK4YJP MYO9A--ARHGAP26 4.60771595792019 3.44040640536611 NA NA differentially expressed differentially expressed NA NA frameshift MYO9A NA ARHGAP26 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_7F3ZPZB7 -BS_6HTK4YJP EVC--STK32B 14.5379686349655 1.67638148599656 NA NA differentially expressed no change NA NA frameshift EVC NA STK32B NA NA Kinase NA NA NA ARRIBA 1 PT_7F3ZPZB7 -BS_6JHXXVR7 ABR--AC134669.2 -1.26404565805495 NA NA NA no change NA NA NA frameshift ABR NA AC134669.2 NA Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 NFKBIE--ZBTB9/GGNBP1 2.90186314815711 4.80913589550387 NA -0.421942346900392 differentially expressed differentially expressed NA no change frameshift NFKBIE NA ZBTB9 GGNBP1 CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 NDUFA5--CDH10/AC091893.1 0.309419354024423 -2.71137582563851 NA NA no change differentially expressed NA NA frameshift NDUFA5 NA CDH10 AC091893.1 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 FN1--MDH1B 7.2244460780863 -1.50377766085916 NA NA differentially expressed no change NA NA frameshift FN1 NA MDH1B NA Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 RABEP1--APBB1IP -0.334440298733512 3.18929398582228 NA NA no change differentially expressed NA NA frameshift RABEP1 NA APBB1IP NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 CUX1--CUX1 1.36116559281642 1.36116559281642 NA NA no change no change NA NA frameshift CUX1 NA CUX1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 SND1--IQUB 2.81321203671249 9.19070804553794 NA NA differentially expressed differentially expressed NA NA in-frame SND1 NA IQUB NA CosmicCensus NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 NUP205--LINC01510/MET 3.34033435624178 0.682436192917446 NA 11.1392074100231 differentially expressed no change NA differentially expressed frameshift NUP205 NA LINC01510 MET NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 SRF--NOMO2 2.61660914997428 -2.09089727933912 NA NA differentially expressed differentially expressed NA NA frameshift SRF NA NOMO2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 NFKBIE--GPR156 2.90186314815711 -0.981378102982626 NA NA differentially expressed no change NA NA frameshift NFKBIE NA GPR156 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 NFKBIE--RNA5SP178/MARCH11 2.90186314815711 NA NA -2.1297793447927 differentially expressed NA NA differentially expressed frameshift NFKBIE NA RNA5SP178 MARCH11 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 NPAS3--RNU6-1060P/AL139231.1 -0.0648182531739379 NA NA NA no change NA NA NA frameshift NPAS3 NA RNU6-1060P AL139231.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 CDC42BPA--TMEM161B-AS1 0.158825674791609 -2.86603795131563 NA NA no change differentially expressed NA NA frameshift CDC42BPA NA TMEM161B-AS1 NA Kinase NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 CREBBP--APP 4.30934106650149 0.702319814728032 NA NA differentially expressed no change NA NA in-frame CREBBP NA APP NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 SRPK1--KLHL28 1.97399996585718 4.17729519595844 NA NA no change differentially expressed NA NA frameshift SRPK1 NA KLHL28 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 SRPK1--RNU6-679P/AC106771.1 1.97399996585718 NA NA NA no change NA NA NA frameshift SRPK1 NA RNU6-679P AC106771.1 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 PIK3CB--LINC01449/INHBA -1.18074020309755 -0.409203537543301 NA 4.61546500661688 no change no change NA differentially expressed frameshift PIK3CB NA LINC01449 INHBA CosmicCensus, Kinase NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 NF1--ABR 1.18344090191443 -1.26404565805495 NA NA no change no change NA NA frameshift NF1 NA ABR NA TumorSuppressorGene, CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 API5--SLX4 3.11845216961031 0.108347906197283 NA NA differentially expressed no change NA NA frameshift API5 NA SLX4 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 FOXP2--AC016831.1 7.66327984615303 NA NA NA differentially expressed NA NA NA frameshift FOXP2 NA AC016831.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 ZNF318--LINC01493/AC021723.1 2.5857829267814 NA NA NA differentially expressed NA NA NA frameshift ZNF318 NA LINC01493 AC021723.1 Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 FN1--FASTKD2 7.2244460780863 3.13371216273153 NA NA differentially expressed differentially expressed NA NA in-frame FN1 NA FASTKD2 NA Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 CDC5L--CPNE5 2.32166597637352 -1.78241061002393 NA NA differentially expressed no change NA NA frameshift CDC5L NA CPNE5 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 CDC5L--AL135908.1 2.32166597637352 NA NA NA differentially expressed NA NA NA frameshift CDC5L NA AL135908.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 FANCD2--DOCK3 3.29451227245733 -3.55534499603569 NA NA differentially expressed differentially expressed NA NA frameshift FANCD2 NA DOCK3 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 ABR--EVI2B -1.26404565805495 1.99229127384418 NA NA no change no change NA NA frameshift ABR NA EVI2B NA Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 SND1--IQUB 2.81321203671249 9.19070804553794 NA NA differentially expressed differentially expressed NA NA frameshift SND1 NA IQUB NA CosmicCensus NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 BRSK1--HSPD1P15/CDH18 -2.31775562603067 -0.0370656907136378 NA -1.72930683827661 differentially expressed no change NA no change frameshift BRSK1 NA HSPD1P15 CDH18 Kinase, TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 FOXP2--GPR22 7.66327984615303 -1.58984077641626 NA NA differentially expressed no change NA NA frameshift FOXP2 NA GPR22 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 COPB1--RAG1 3.42508608923226 10.2585936784579 NA NA differentially expressed differentially expressed NA NA frameshift COPB1 NA RAG1 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 METTL22--LMO2/CAPRIN1 1.04444230444293 -1.36133731752072 NA 4.57881938360767 no change no change NA differentially expressed frameshift METTL22 NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 CUX1--SPAM1 1.36116559281642 173.423139482319 NA NA no change differentially expressed NA NA frameshift CUX1 NA SPAM1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6JHXXVR7 PTPRH--CDH10/AC091893.1 4.73350400506873 -2.71137582563851 NA NA differentially expressed differentially expressed NA NA frameshift PTPRH NA CDH10 AC091893.1 Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_6M2053M0 PSD3--AC124242.1/NAT1 -0.513155977478644 NA NA 3.10727134198733 no change NA NA differentially expressed frameshift PSD3 NA AC124242.1 NAT1 NA NA NA Oncogene NA ARRIBA 1 PT_RE6AXQM1 -BS_6M2053M0 PROX1--AP001528.1 0.223172707770476 NA NA NA no change NA NA NA frameshift PROX1 NA AP001528.1 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RE6AXQM1 -BS_6M2053M0 JAZF1--LINC00838/RPL23P11 0.730639826442292 -0.180090319708998 NA -0.0652250785262547 no change no change NA no change frameshift JAZF1 NA LINC00838 RPL23P11 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RE6AXQM1 -BS_6M2053M0 TRIM37--CASP4 0.152553086248306 2.09228620789934 NA NA no change differentially expressed NA NA frameshift TRIM37 NA CASP4 NA Oncogene NA NA NA NA ARRIBA 1 PT_RE6AXQM1 -BS_6M2053M0 PABPC1--CARSP2/TRPS1 2.92117561450522 NA NA 1.43877429447816 differentially expressed NA NA no change frameshift PABPC1 NA CARSP2 TRPS1 CosmicCensus NA NA TranscriptionFactor NA ARRIBA 1 PT_RE6AXQM1 -BS_6M2053M0 FAT3--DISC1FP1/AP001002.3 0.81897841362433 1.07805217576365 NA NA no change no change NA NA frameshift FAT3 NA DISC1FP1 AP001002.3 CosmicCensus NA NA NA NA ARRIBA 1 PT_RE6AXQM1 -BS_6MY8W3H0 FAM135B--FAM135B 1.89096405484759 1.89096405484759 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_PY4QFHHV -BS_6MY8W3H0 KCNH1--AL590132.1 4.11489877258609 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_PY4QFHHV -BS_6MY8W3H0 KCNH1--KCNH1 4.11489877258609 4.11489877258609 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_PY4QFHHV -BS_6MY8W3H0 CSMD3--CSMD3 2.73630420134679 2.73630420134679 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PY4QFHHV -BS_6MY8W3H0 KCNH1--AL590132.1 4.11489877258609 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_PY4QFHHV -BS_6MY8W3H0 RFX4--RFX4 0.35981163418789 0.35981163418789 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_PY4QFHHV -BS_6MY8W3H0 AL590132.1--KCNH1 NA 4.11489877258609 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_PY4QFHHV -BS_6MY8W3H0 AL590132.1--KCNH1 NA 4.11489877258609 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_PY4QFHHV -BS_6MZ7FRZH C11orf95--RELA 4.48421640185791 5.46360715535048 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_6BX46NVR -BS_6MZ7FRZH ASRGL1--RHOG -2.90718477783423 -0.0679336513302681 NA NA differentially expressed no change NA NA in-frame ASRGL1 NA RHOG NA NA Oncogene NA NA NA ARRIBA 1 PT_6BX46NVR -BS_6MZ7FRZH RFX4--RFX4 2.27731564132531 2.27731564132531 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_6BX46NVR -BS_6N3AFF66 KIAA1549--BRAF 5.48723507174155 2.24930854337418 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_SBHN5F68 -BS_6T4JGBGY KCNH1--KCNH1 0.793893117485448 0.793893117485448 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_218SX3G4 -BS_6VPKXXMR CTSB--RNF19A 0.915096499586039 1.0369202390839 NA NA no change no change NA NA frameshift CTSB NA RNF19A NA Oncogene NA NA NA NA ARRIBA 1 PT_6PP78VNE -BS_6VPKXXMR GPR176--TAF1 -0.648810270889008 2.1986991504319 NA NA no change differentially expressed NA NA in-frame GPR176 NA TAF1 NA NA Kinase NA NA NA ARRIBA 1 PT_6PP78VNE -BS_6VPKXXMR TAF1--WDR17 2.1986991504319 1.03171478948016 NA NA differentially expressed no change NA NA frameshift TAF1 NA WDR17 NA Kinase NA NA NA NA ARRIBA 1 PT_6PP78VNE -BS_6VPKXXMR EPHA3--TSKU 19.1721967169927 8.90003236284469 NA NA differentially expressed differentially expressed NA NA in-frame EPHA3 NA TSKU NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_6PP78VNE -BS_6VPKXXMR EPHA3--GUCY2EP/AP003119.1 19.1721967169927 -0.215972505236898 NA NA differentially expressed no change NA NA frameshift EPHA3 NA GUCY2EP AP003119.1 Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_6PP78VNE -BS_6VPKXXMR TAF1--MARK2P4/WDR17 2.1986991504319 -0.0451743159528945 NA 1.03171478948016 differentially expressed no change NA no change frameshift TAF1 NA MARK2P4 WDR17 Kinase NA NA NA NA ARRIBA 1 PT_6PP78VNE -BS_6VPKXXMR ROBO2--MTCYBP27/RNU6-976P 1.98261203223809 NA NA NA no change NA NA NA frameshift ROBO2 NA MTCYBP27 RNU6-976P CosmicCensus NA NA NA NA ARRIBA 1 PT_6PP78VNE -BS_6VPKXXMR SPRED1--EIF2AK4 2.83272370422026 -1.10744835915515 NA NA differentially expressed no change NA NA frameshift SPRED1 NA EIF2AK4 NA NA Kinase NA NA NA ARRIBA 1 PT_6PP78VNE -BS_6WP1FHTE AKAP13--TMBIM6 3.86115291231542 2.06056419179142 NA NA differentially expressed differentially expressed NA NA in-frame AKAP13 NA TMBIM6 NA Oncogene NA NA NA NA ARRIBA 1 PT_Z4PJA6KT -BS_6WP1FHTE LANCL2--EGFR 0.879931255399666 3.52764831790165 NA NA no change differentially expressed NA NA frameshift LANCL2 NA EGFR NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_Z4PJA6KT -BS_6WP1FHTE ERC2--ERC2 1.20466618094545 1.20466618094545 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_Z4PJA6KT -BS_6WP1FHTE ST7--AC007036.1/ZNRF2 4.29495750012328 NA NA 4.72007251750714 differentially expressed NA NA differentially expressed frameshift ST7 NA AC007036.1 ZNRF2 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_Z4PJA6KT -BS_6WP1FHTE AC010132.3--LINC-PINT NA -1.04571558793558 NA NA NA no change NA NA frameshift AC010132.3 NA LINC-PINT NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Z4PJA6KT -BS_6WP1FHTE C7orf25--LINC-PINT 4.47755478961887 -1.04571558793558 NA NA differentially expressed no change NA NA frameshift C7orf25 NA LINC-PINT NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Z4PJA6KT -BS_6WP1FHTE NCOR1--GDPD1 1.72102784960227 -0.55450141041219 NA NA no change no change NA NA frameshift NCOR1 NA GDPD1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_Z4PJA6KT -BS_6WP1FHTE SREBF1--TNKS 0.751412414211757 4.10399892732552 NA NA no change differentially expressed NA NA frameshift SREBF1 NA TNKS NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4PJA6KT -BS_70FFPA51 PPP4R3B--ZIC5 NA 0.737942615445401 NA NA NA no change NA NA in-frame PPP4R3B NA ZIC5 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_BCWGRGDB -BS_70FFPA51 FKBP9--AC004869.1/HMGN1P19 3.1054673467839 NA NA -0.0294627825494395 differentially expressed NA NA no change frameshift FKBP9 NA AC004869.1 HMGN1P19 CosmicCensus NA NA NA NA ARRIBA 1 PT_BCWGRGDB -BS_70FFPA51 NF2--PISD -2.68013287136074 -0.757410094020417 NA NA differentially expressed no change NA NA in-frame NF2 NA PISD NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_BCWGRGDB -BS_70FFPA51 NF2--PISD -2.68013287136074 -0.757410094020417 NA NA differentially expressed no change NA NA frameshift NF2 NA PISD NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_BCWGRGDB -BS_7327SDAQ IRAK3--AC108721.1 2.00142867098913 NA NA NA differentially expressed NA NA NA frameshift IRAK3 NA AC108721.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_7WT6P5M8 -BS_7327SDAQ ZNF521--PPM1E 1.16610755885942 1.82791799154809 NA NA no change no change NA NA frameshift ZNF521 NA PPM1E NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_7WT6P5M8 -BS_7327SDAQ PTPRZ1--MET 4.13222521914009 1.60524498205299 NA NA differentially expressed no change NA NA in-frame PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_7WT6P5M8 -BS_7327SDAQ ZNF521--RAD51C 1.16610755885942 -0.374548440260789 NA NA no change no change NA NA frameshift ZNF521 NA RAD51C NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene NA NA NA ARRIBA 1 PT_7WT6P5M8 -BS_7327SDAQ PTPRZ1--MET 4.13222521914009 1.60524498205299 NA NA differentially expressed no change NA NA frameshift PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_7WT6P5M8 -BS_7327SDAQ TMEM132E--ETV4 0.887726351953358 6.32029494598271 NA NA no change differentially expressed NA NA in-frame TMEM132E NA ETV4 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_7WT6P5M8 -BS_7327SDAQ TCF12--POLR2M 5.23372520620468 -0.011471136949151 NA NA differentially expressed no change NA NA frameshift TCF12 NA POLR2M NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7WT6P5M8 -BS_7327SDAQ CHFR--OR4A41P/OR4A42P -0.0148133495985387 -0.0817941527241854 NA -0.0563967449092603 no change no change NA no change frameshift CHFR NA OR4A41P OR4A42P TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_7WT6P5M8 -BS_7327SDAQ TCF12--ALDH1A2 5.23372520620468 1.3177321080697 NA NA differentially expressed no change NA NA frameshift TCF12 NA ALDH1A2 NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene NA NA NA ARRIBA 1 PT_7WT6P5M8 -BS_7327SDAQ JAZF1--SDK1 1.01624839256815 2.55057079153607 NA NA no change differentially expressed NA NA frameshift JAZF1 NA SDK1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7WT6P5M8 -BS_7327SDAQ TMEM132E--ETV4 0.887726351953358 6.32029494598271 NA NA no change differentially expressed NA NA frameshift TMEM132E NA ETV4 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_7WT6P5M8 -BS_742RHK1M CDC42BPA--MEG8 3.97477451803632 7.01871672352147 NA NA differentially expressed differentially expressed NA NA frameshift CDC42BPA NA MEG8 NA Kinase NA NA NA NA ARRIBA 1 PT_1TB2V1PH -BS_74FS6GMW AL138752.2--CUX1 NA 0.769530514325184 NA NA NA no change NA NA frameshift AL138752.2 NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_XTVQB9S4 -BS_74FS6GMW AL138752.2--CUX1 NA 0.769530514325184 NA NA NA no change NA NA in-frame AL138752.2 NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_XTVQB9S4 -BS_74FS6GMW SHB--CUX1 3.84830320936978 0.769530514325184 NA NA differentially expressed no change NA NA in-frame SHB NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_XTVQB9S4 -BS_74FS6GMW CUX1--SHB 0.769530514325184 3.84830320936978 NA NA no change differentially expressed NA NA frameshift CUX1 NA SHB NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_XTVQB9S4 -BS_74FS6GMW SHB--CUX1 3.84830320936978 0.769530514325184 NA NA differentially expressed no change NA NA frameshift SHB NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_XTVQB9S4 -BS_74FS6GMW CUX1--AL138752.2 0.769530514325184 NA NA NA no change NA NA NA frameshift CUX1 NA AL138752.2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_XTVQB9S4 -BS_74FS6GMW NPAS3--ARHGAP5 2.56873158356076 2.36918644151005 NA NA differentially expressed differentially expressed NA NA frameshift NPAS3 NA ARHGAP5 NA TranscriptionFactor CosmicCensus NA NA NA ARRIBA 1 PT_XTVQB9S4 -BS_74G5K7JF C11orf95--NCOA1 3.44066350681856 2.34324479221579 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA NCOA1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_8PV84CNE -BS_74G5K7JF PLCE1--PIPSL/PLCE1 8.09529454304416 7.87880665064339 NA 8.09529454304416 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_8PV84CNE -BS_775HDFNY KIAA1549--BRAF 4.011210110761 2.11760032008653 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_GCKT4FJX -BS_7B89YR6K ROBO2--ROBO2 1.80554424569801 1.80554424569801 NA NA no change no change NA NA frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_ZZWYKZZ8 -BS_7BTZQKYY PLEKHA8--PLEKHA8 0.518368376213763 0.518368376213763 NA NA no change no change NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QZN7FZER -BS_7BTZQKYY LMNTD1--LMNTD1 12.7626773375492 12.7626773375492 NA NA differentially expressed differentially expressed NA NA frameshift LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_QZN7FZER -BS_7BTZQKYY DNAH9--DNAH9 5.25052862963271 5.25052862963271 NA NA differentially expressed differentially expressed NA NA frameshift DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QZN7FZER -BS_7BTZQKYY FAT3--NDUFB11P1/FAT3 3.93561735395327 -0.18635853916265 NA 3.93561735395327 differentially expressed no change NA differentially expressed frameshift FAT3 NA NDUFB11P1 FAT3 CosmicCensus NA NA CosmicCensus NA ARRIBA 1 PT_QZN7FZER -BS_7BTZQKYY FAM135B--FAM135B 1.30754769257087 1.30754769257087 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_QZN7FZER -BS_7BTZQKYY ECT2L--ECT2L 21.2442602557792 21.2442602557792 NA NA differentially expressed differentially expressed NA NA frameshift ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_QZN7FZER -BS_7BTZQKYY CSMD3--CSMD3 4.64204546357697 4.64204546357697 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_QZN7FZER -BS_7BTZQKYY LRGUK--LRGUK 19.9090189716203 19.9090189716203 NA NA differentially expressed differentially expressed NA NA in-frame LRGUK NA LRGUK NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QZN7FZER -BS_7BTZQKYY PLCE1--PIPSL/PLCE1 5.42457509043084 7.22486786620522 NA 5.42457509043084 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_QZN7FZER -BS_7BTZQKYY PRKD1--AL133372.2 2.76916539053175 NA NA NA differentially expressed NA NA NA frameshift PRKD1 NA AL133372.2 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_QZN7FZER -BS_7BTZQKYY FOXP2--FOXP2 5.56308207039609 5.56308207039609 NA NA differentially expressed differentially expressed NA NA frameshift FOXP2 NA FOXP2 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_QZN7FZER -BS_7BTZQKYY PAPPA2--PAPPA2 12.0804472478924 12.0804472478924 NA NA differentially expressed differentially expressed NA NA frameshift PAPPA2 NA PAPPA2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QZN7FZER -BS_7BTZQKYY RFX3--RFX3 7.65025136575417 7.65025136575417 NA NA differentially expressed differentially expressed NA NA in-frame RFX3 NA RFX3 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_QZN7FZER -BS_7BTZQKYY ARHGAP35--AP2S1/ARHGAP35 2.04985811428039 -0.790911611646808 NA 2.04985811428039 differentially expressed no change NA differentially expressed frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_QZN7FZER -BS_7BTZQKYY RFX4--RFX4 2.1137877788009 2.1137877788009 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_QZN7FZER -BS_7BW0YRPY ARHGEF12--ETS1 1.65906972804983 3.08285693715961 NA NA no change differentially expressed NA NA frameshift ARHGEF12 NA ETS1 NA TumorSuppressorGene, CosmicCensus, Oncogene Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_0T2EWNYR -BS_7C40TRCY JAK2--JAK2 0.993954214120359 0.993954214120359 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_NCDHZ8H8 -BS_7FWZ518S ST18--ST18 2.66546261417082 2.66546261417082 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_SBP79T7F -BS_7FWZ518S PRKAR2A--ULK4 4.11431765575204 2.68108284582589 NA NA differentially expressed differentially expressed NA NA frameshift PRKAR2A NA ULK4 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_SBP79T7F -BS_7FWZ518S FAM135B--FAM135B 1.86248723488335 1.86248723488335 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_SBP79T7F -BS_7FWZ518S CSMD3--CSMD3 0.0469481941687346 0.0469481941687346 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_SBP79T7F -BS_7FWZ518S CDH10--CDH10 0.216090943818237 0.216090943818237 NA NA no change no change NA NA frameshift CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_SBP79T7F -BS_7FWZ518S BAIAP2--MAP2K6 0.409982481969658 4.44047061880811 NA NA no change differentially expressed NA NA frameshift BAIAP2 NA MAP2K6 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_SBP79T7F -BS_7G42J2SK RELA--AP001994.1/AP001360.1 4.35949074949949 NA NA NA differentially expressed NA NA NA frameshift RELA NA AP001994.1 AP001360.1 Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK C11orf95--RELA 4.00690888067391 4.35949074949949 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK CADM1--SLC17A6 1.06156700305898 0.371855670999435 NA NA no change no change NA NA frameshift CADM1 NA SLC17A6 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK ADAMTS2--CLK4 4.55980629855511 -0.945588039205328 NA NA differentially expressed no change NA NA in-frame ADAMTS2 NA CLK4 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK KMT2C--KMT2C 2.15956900127204 2.15956900127204 NA NA differentially expressed differentially expressed NA NA frameshift KMT2C NA KMT2C NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK CNTRL--CNTRL 3.71924440310096 3.71924440310096 NA NA differentially expressed differentially expressed NA NA frameshift CNTRL NA CNTRL NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK UBE4B--UBE4B -0.313051063972169 -0.313051063972169 NA NA no change no change NA NA frameshift UBE4B NA UBE4B NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK PBRM1--PBRM1 4.53482970565797 4.53482970565797 NA NA differentially expressed differentially expressed NA NA in-frame PBRM1 NA PBRM1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK FRYL--FRYL 2.16682544951488 2.16682544951488 NA NA differentially expressed differentially expressed NA NA in-frame FRYL NA FRYL NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK CDKL4--CDKL4/MAP4K3 11.7311792088127 11.7311792088127 NA 2.16476646301817 differentially expressed differentially expressed NA differentially expressed frameshift CDKL4 NA CDKL4 MAP4K3 Kinase, Kinase Kinase, Kinase NA Kinase NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK NEK10--NEK10 3.50338079453899 3.50338079453899 NA NA differentially expressed differentially expressed NA NA frameshift NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK RAB6A--PIK3C2A -1.27705940089731 1.00773171400033 NA NA no change no change NA NA frameshift RAB6A NA PIK3C2A NA NA Kinase NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK CADM1--AP003063.1/AP003100.1 1.06156700305898 NA NA NA no change NA NA NA frameshift CADM1 NA AP003063.1 AP003100.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK NUMA1--AP001994.1/AP001360.1 -0.664241124822618 NA NA NA no change NA NA NA frameshift NUMA1 NA AP001994.1 AP001360.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK PLCE1--PIPSL/PLCE1 6.90616847140518 11.4883046883512 NA 6.90616847140518 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK NBEA--NBEA 0.649307032670811 0.649307032670811 NA NA no change no change NA NA frameshift NBEA NA NBEA NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK WRN--WRN 2.9734944663455 2.9734944663455 NA NA differentially expressed differentially expressed NA NA frameshift WRN NA WRN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BWN251DF -BS_7G42J2SK UBR5--UBR5 0.643267659597317 0.643267659597317 NA NA no change no change NA NA in-frame UBR5 NA UBR5 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_BWN251DF -BS_7GJT4A6A UBE3C--EXOC4 2.41965584106165 4.03308592038427 NA NA differentially expressed differentially expressed NA NA in-frame UBE3C NA EXOC4 NA NA Oncogene NA NA NA ARRIBA 1 PT_9JT1441X -BS_7GJT4A6A PRKCE--AC073111.4 1.48597768164777 NA NA NA no change NA NA NA frameshift PRKCE NA AC073111.4 NA TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_9JT1441X -BS_7GJT4A6A PRKCE--AC073111.5 1.48597768164777 NA NA NA no change NA NA NA frameshift PRKCE NA AC073111.5 NA TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_9JT1441X -BS_7GJT4A6A STAG1--CLRN1-AS1 3.40401056848453 12.7015690920632 NA NA differentially expressed differentially expressed NA NA frameshift STAG1 NA CLRN1-AS1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9JT1441X -BS_7GJT4A6A FAM208A--ROBO2 0.315652045707434 1.98602093625944 NA NA no change no change NA NA frameshift FAM208A NA ROBO2 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_9JT1441X -BS_7N0B2CY1 CSMD3--CSMD3 3.42947819958104 3.42947819958104 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_NPHZQW6A -BS_7N0B2CY1 ERC2--ERC2 3.27407879330693 3.27407879330693 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NPHZQW6A -BS_7N0B2CY1 KIAA1549--KIAA1549 3.79069661052825 3.79069661052825 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA KIAA1549 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_NPHZQW6A -BS_7P83Z28P PLCE1--PIPSL/PLCE1 5.6410753956057 5.54731677388306 NA 5.6410753956057 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_K63972GG -BS_7P83Z28P KIAA1549--BRAF 3.67159500612655 2.30874127548758 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_K63972GG -BS_7WM3MNZ0 BMP2K--RPS23P3/RNU6-699P 3.03935825117924 -0.0805791472287598 NA NA differentially expressed no change NA NA frameshift BMP2K NA RPS23P3 RNU6-699P Kinase NA NA NA NA ARRIBA 1 PT_W5GP3F6B -BS_7XRN3CFX CSMD3--CSMD3 0.61261934115502 0.61261934115502 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_7XRN3CFX AL590132.1--KCNH1 NA 2.13054798618757 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_7XRN3CFX ERC2--ERC2 1.35909374411592 1.35909374411592 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_7XRN3CFX KCNH1--AL590132.1 2.13054798618757 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_7XRN3CFX KCNH1--AL590132.1 2.13054798618757 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_7XRN3CFX AL590132.1--KCNH1 NA 2.13054798618757 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_7XRN3CFX KCNH1--KCNH1 2.13054798618757 2.13054798618757 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_7XRN3CFX CDH10--CDH10 0.13357491709741 0.13357491709741 NA NA no change no change NA NA frameshift CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_7XRN3CFX MTAP--AL354994.1 4.36934563655736 NA NA NA differentially expressed NA NA NA frameshift MTAP NA AL354994.1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_7XRN3CFX WNK3--WNK3 6.18466974544391 6.18466974544391 NA NA differentially expressed differentially expressed NA NA in-frame WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_7Z93ZYMS KIAA1549--BRAF 3.8759063500538 1.76737958524981 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_3J0ASVHN -BS_7ZV3DPGT GPC5--MIR17HG/GPC5 0.892987972201013 21.6278561445881 NA 0.892987972201013 no change differentially expressed NA no change frameshift GPC5 NA MIR17HG GPC5 TumorSuppressorGene, CosmicCensus, Oncogene NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA ARRIBA 1 PT_QD6KKKJH -BS_81SP2HX4 MAP4--FECHP1/KRT8P18 -2.0899979036013 53.2868556199498 NA -0.0897950133157401 differentially expressed differentially expressed NA no change frameshift MAP4 NA FECHP1 KRT8P18 Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_81SP2HX4 PRMT8--CCND2 0.773974865726146 8.10696527319421 NA NA no change differentially expressed NA NA frameshift PRMT8 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C -BS_81SP2HX4 NGEF--CSRNP3 0.535806713362737 1.36429448651205 NA NA no change no change NA NA frameshift NGEF NA CSRNP3 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_XA98HG1C -BS_81SP2HX4 PRMT8--AC007207.1/CCND2-AS1 0.773974865726146 NA NA 1.40359860436119 no change NA NA no change frameshift PRMT8 NA AC007207.1 CCND2-AS1 NA NA NA Oncogene NA ARRIBA 1 PT_XA98HG1C -BS_81SP2HX4 TANK--AC062031.1/RNU7-2P 2.61746320574556 -0.23488732253055 NA NA differentially expressed no change NA NA frameshift TANK NA AC062031.1 RNU7-2P TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_81SP2HX4 MAP4--CNTN4 -2.0899979036013 1.47541007523494 NA NA differentially expressed no change NA NA in-frame MAP4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C -BS_81SP2HX4 CCND2--PARP11 8.10696527319421 13.0055781198645 NA NA differentially expressed differentially expressed NA NA frameshift CCND2 NA PARP11 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_81SP2HX4 NGEF--CSRNP3/GALNT3 0.535806713362737 1.36429448651205 NA -0.641985299195113 no change no change NA no change frameshift NGEF NA CSRNP3 GALNT3 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_XA98HG1C -BS_81SP2HX4 CCND2--MYRIP 8.10696527319421 -1.92398057528222 NA NA differentially expressed no change NA NA frameshift CCND2 NA MYRIP NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_81SP2HX4 NMT1--RPS6KB1 1.01186803769751 1.91117123371946 NA NA no change no change NA NA frameshift NMT1 NA RPS6KB1 NA Oncogene Kinase NA NA NA ARRIBA 1 PT_XA98HG1C -BS_81SP2HX4 ERC1--PRMT8 5.33122944318442 0.773974865726146 NA NA differentially expressed no change NA NA frameshift ERC1 NA PRMT8 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_81SP2HX4 UBE2E1--SNORD77/ALS2CL -2.39127936109367 NA NA -1.74238618435748 differentially expressed NA NA no change frameshift UBE2E1 NA SNORD77 ALS2CL NA NA NA Oncogene NA ARRIBA 1 PT_XA98HG1C -BS_81SP2HX4 CCND2--NINJ2 8.10696527319421 2.12211056537719 NA NA differentially expressed differentially expressed NA NA in-frame CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_84XCR9GG ZNF33B--AL583859.2/AL136452.1 -0.138712825396424 NA NA NA no change NA NA NA frameshift ZNF33B NA AL583859.2 AL136452.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_CB1DN0V8 -BS_84XCR9GG UNC5B--GRID1 0.564494152269343 -2.00161011406602 NA NA no change differentially expressed NA NA frameshift UNC5B NA GRID1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 -BS_84XCR9GG TRRAP--NPM1P14/AC002463.1 3.30112155056111 -0.108773992844755 NA NA differentially expressed no change NA NA frameshift TRRAP NA NPM1P14 AC002463.1 Kinase, CosmicCensus, Kinase NA NA NA NA ARRIBA 1 PT_CB1DN0V8 -BS_84XCR9GG VAV3--5S_rRNA/DEFB115 5.05085162538562 -0.305368524588531 NA NA differentially expressed no change NA NA frameshift VAV3 NA 5S_rRNA DEFB115 Oncogene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 -BS_84XCR9GG PLCE1--C10orf35/AL450311.1 3.49859946837197 -1.41898409825171 NA NA differentially expressed no change NA NA frameshift PLCE1 NA C10orf35 AL450311.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 -BS_84XCR9GG SLK--LHPP 2.07833094786557 -2.36020919574483 NA NA differentially expressed differentially expressed NA NA frameshift SLK NA LHPP NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_CB1DN0V8 -BS_84XCR9GG ANXA7--MRPS21P6/RPS27P18 -1.5735102852335 2.60459932153564 NA -0.0294627825494395 no change differentially expressed NA no change frameshift ANXA7 NA MRPS21P6 RPS27P18 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 -BS_84XCR9GG DUSP5--DOCK1 2.19925460237813 0.128648008418218 NA NA differentially expressed no change NA NA in-frame DUSP5 NA DOCK1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 -BS_84XCR9GG VAV3--DEFB115 5.05085162538562 NA NA NA differentially expressed NA NA NA frameshift VAV3 NA DEFB115 NA Oncogene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 -BS_84XCR9GG DUSP5--DOCK1 2.19925460237813 0.128648008418218 NA NA differentially expressed no change NA NA frameshift DUSP5 NA DOCK1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 -BS_84XCR9GG LHPP--SLK -2.36020919574483 2.07833094786557 NA NA differentially expressed differentially expressed NA NA frameshift LHPP NA SLK NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_CB1DN0V8 -BS_8F9BDWY4 JAK2--JAK2 1.42760569239949 1.42760569239949 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_XY404K0D -BS_8F9BDWY4 CSMD3--CSMD3 4.32155632842864 4.32155632842864 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XY404K0D -BS_8F9BDWY4 FAM135B--FAM135B -0.299791756476218 -0.299791756476218 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_XY404K0D -BS_8F9BDWY4 TFDP2--TFDP2 2.7496507975335 2.7496507975335 NA NA differentially expressed differentially expressed NA NA frameshift TFDP2 NA TFDP2 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_XY404K0D -BS_8F9BDWY4 ADAM9--TACC1/PLEKHA2 0.562315608626043 3.77953893003995 NA 1.29028351619856 no change differentially expressed NA no change frameshift ADAM9 NA TACC1 PLEKHA2 Oncogene Oncogene NA Oncogene NA ARRIBA 1 PT_XY404K0D -BS_8F9BDWY4 ARHGAP35--AP2S1/ARHGAP35 2.61355719665359 -0.382040144922394 NA 2.61355719665359 differentially expressed no change NA differentially expressed frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_XY404K0D -BS_8F9BDWY4 FGFR1--TACC1 2.64184026875163 3.77953893003995 NA NA differentially expressed differentially expressed NA NA in-frame FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA ARRIBA 1 PT_XY404K0D -BS_8GW1TMV2 DDX1--AC008164.1/AC008069.1 -1.24019294766478 NA NA -0.637085305131329 no change NA NA no change frameshift DDX1 NA AC008164.1 AC008069.1 Oncogene NA NA NA NA ARRIBA 1 PT_GR8P8NY5 -BS_8GW1TMV2 TFE3--AC245047.7/SSX5 2.9508181612491 NA NA -0.0528873665361719 differentially expressed NA NA no change frameshift TFE3 NA AC245047.7 SSX5 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_GR8P8NY5 -BS_8J3B6ZB6 KIAA1549--BRAF 4.51409051898434 1.73029500935129 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_EF398HVC -BS_8MA5B8Y9 KCNH1--KCNH1 1.95516130844469 1.95516130844469 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AP658JQV -BS_8MA5B8Y9 MYT1L--MYT1L 0.278270679032542 0.278270679032542 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_AP658JQV -BS_8MA5B8Y9 ZNF592--LINC00924/AC015574.1 2.28439892342603 -1.22607403353817 NA NA differentially expressed no change NA NA frameshift ZNF592 NA LINC00924 AC015574.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_AP658JQV -BS_8MA5B8Y9 AL590132.1--KCNH1 NA 1.95516130844469 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_AP658JQV -BS_8MA5B8Y9 AL590132.1--KCNH1 NA 1.95516130844469 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_AP658JQV -BS_8MA5B8Y9 ERC2--ERC2 2.59017281193549 2.59017281193549 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AP658JQV -BS_8MA5B8Y9 CNTN4--CNTN4 1.35267444216513 1.35267444216513 NA NA no change no change NA NA in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AP658JQV -BS_8MA5B8Y9 DMXL1--SOX6 1.11715645990541 5.01357913301443 NA NA no change differentially expressed NA NA frameshift DMXL1 NA SOX6 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_AP658JQV -BS_8MA5B8Y9 KCNH1--AL590132.1 1.95516130844469 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_AP658JQV -BS_8MA5B8Y9 ZNF592--LINC02254 2.28439892342603 NA NA NA differentially expressed NA NA NA frameshift ZNF592 NA LINC02254 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_AP658JQV -BS_8MA5B8Y9 KCNH1--AL590132.1 1.95516130844469 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_AP658JQV -BS_8NY9J9NQ NF2--AC069503.2 -2.46733282118206 NA NA NA differentially expressed NA NA NA frameshift NF2 NA AC069503.2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_JEW5HG4W -BS_8NY9J9NQ SGPL1--DIP2C 1.90103088678145 1.08594636932279 NA NA no change no change NA NA frameshift SGPL1 NA DIP2C NA NA Oncogene NA NA NA ARRIBA 1 PT_JEW5HG4W -BS_8NY9J9NQ NF2--PSMD9 -2.46733282118206 2.51336990799559 NA NA differentially expressed differentially expressed NA NA frameshift NF2 NA PSMD9 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_JEW5HG4W -BS_8NY9J9NQ PLCE1--PIPSL/PLCE1 4.58790363781198 4.97617639489402 NA 4.58790363781198 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_JEW5HG4W -BS_8NY9J9NQ ZNF33A--SKINT1L 1.10206597235612 NA NA NA no change NA NA NA frameshift ZNF33A NA SKINT1L NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JEW5HG4W -BS_8NY9J9NQ NF2--PSMD9 -2.46733282118206 2.51336990799559 NA NA differentially expressed differentially expressed NA NA in-frame NF2 NA PSMD9 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_JEW5HG4W -BS_8NY9J9NQ NF2--AC069503.3/PSMD9 -2.46733282118206 NA NA 2.51336990799559 differentially expressed NA NA differentially expressed frameshift NF2 NA AC069503.3 PSMD9 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_JEW5HG4W -BS_8NY9J9NQ EGFR--AC004899.1/GDI2P1 6.60476593002192 NA NA -0.283915109908497 differentially expressed NA NA no change frameshift EGFR NA AC004899.1 GDI2P1 Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_JEW5HG4W -BS_8NY9J9NQ NF2--AC069503.2 -2.46733282118206 NA NA NA differentially expressed NA NA NA in-frame NF2 NA AC069503.2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_JEW5HG4W -BS_8NY9J9NQ PMPCB--CNTNAP2 0.30568356088251 0.343128903275248 NA NA no change no change NA NA in-frame PMPCB NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_JEW5HG4W -BS_8NY9J9NQ TFCP2--TMPRSS12 -1.1560875461209 3.65967508482564 NA NA no change differentially expressed NA NA in-frame TFCP2 NA TMPRSS12 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JEW5HG4W -BS_8NY9J9NQ RTN3--RNA5-8SP4/ZNF254 -2.76061663832282 NA NA 1.62727459379096 differentially expressed NA NA no change frameshift RTN3 NA RNA5-8SP4 ZNF254 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_JEW5HG4W -BS_8NY9J9NQ TFCP2--TMPRSS12 -1.1560875461209 3.65967508482564 NA NA no change differentially expressed NA NA frameshift TFCP2 NA TMPRSS12 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JEW5HG4W -BS_8NY9J9NQ PATJ--PRF1 NA 0.302280481571868 NA NA NA no change NA NA in-frame PATJ NA PRF1 NA Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JEW5HG4W -BS_8PNA0V6R WNK3--WNK3 9.06723232710711 9.06723232710711 NA NA differentially expressed differentially expressed NA NA in-frame WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_QQZXYR4M -BS_8PNA0V6R ZNF121--POLRMT 5.55888026177105 -2.04582285102063 NA NA differentially expressed differentially expressed NA NA frameshift ZNF121 NA POLRMT NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_QQZXYR4M -BS_8PNA0V6R PBRM1--PBRM1 3.37852872723558 3.37852872723558 NA NA differentially expressed differentially expressed NA NA frameshift PBRM1 NA PBRM1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_QQZXYR4M -BS_8RCR7Y4B PIK3C3--PIK3C3 1.84648779676156 1.84648779676156 NA NA no change no change NA NA in-frame PIK3C3 NA PIK3C3 NA Kinase Kinase NA NA NA ARRIBA 1 PT_RXJZ3C5G -BS_8RCR7Y4B MYT1L--MYT1L 0.20441152187085 0.20441152187085 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RXJZ3C5G -BS_8RHPJ740 CSMD3--CSMD3 0.94918126844842 0.94918126844842 NA NA no change no change NA NA frameshift CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_ZA95JQEB -BS_8RHPJ740 FAM135B--FAM135B 1.73351553135441 1.73351553135441 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_ZA95JQEB -BS_8RHPJ740 ECT2L--ECT2L 7.17013584456416 7.17013584456416 NA NA differentially expressed differentially expressed NA NA frameshift ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_ZA95JQEB -BS_8RHPJ740 MYO3A--MYO3A 6.2874813869769 6.2874813869769 NA NA differentially expressed differentially expressed NA NA frameshift MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_ZA95JQEB -BS_8RHPJ740 RFX4--RFX4 2.07462736504472 2.07462736504472 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ZA95JQEB -BS_8S86CM61 ST18--ST18 3.59396274315551 3.59396274315551 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_SA94083W -BS_8SKZ7BRN ZNF384--AC018653.2/ACSM4 2.19703816662868 NA NA 44.6901588987938 differentially expressed NA NA differentially expressed frameshift ZNF384 NA AC018653.2 ACSM4 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9D2N4S5Z -BS_8T7DZV2F RTKN2--RN7SL591P/ZNF365 3.23344146199604 -0.477529656403699 NA -3.09653138960227 differentially expressed no change NA differentially expressed frameshift RTKN2 NA RN7SL591P ZNF365 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_62VNQ8C4 -BS_8VAZSJEN KIAA1549--BRAF 3.92704340161532 1.57077871956464 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_6R95FQT2 -BS_8Z3SCKB5 CNBD1--AC090572.3 45.0681729805378 NA NA NA differentially expressed NA NA NA frameshift CNBD1 NA AC090572.3 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_66XN3MT1 -BS_8ZD6J47V MYLK--MYLK -0.969933472130383 -0.969933472130383 NA NA no change no change NA NA frameshift MYLK NA MYLK NA Kinase Kinase NA NA NA ARRIBA 1 PT_4347ZBEX -BS_8ZD6J47V MSH3--MSH3 3.7505171813649 3.7505171813649 NA NA differentially expressed differentially expressed NA NA frameshift MSH3 NA MSH3 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_4347ZBEX -BS_8ZD6J47V ASTN2--ANKS6 2.21975426045007 1.41951051617803 NA NA differentially expressed no change NA NA in-frame ASTN2 NA ANKS6 NA Oncogene NA NA NA NA ARRIBA 1 PT_4347ZBEX -BS_8ZD6J47V CABLES1--LAMA3 -0.840972923164651 -0.973003126730369 NA NA no change no change NA NA frameshift CABLES1 NA LAMA3 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_4347ZBEX -BS_8ZD6J47V ARHGAP35--AP2S1/ARHGAP35 3.62337532966382 0.414491404666552 NA 3.62337532966382 differentially expressed no change NA differentially expressed frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_4347ZBEX -BS_8ZP3CBQA RFX4--RFX4 3.24991915571252 3.24991915571252 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_T4VKB29K -BS_8ZP3CBQA CDH20--CDH20 -0.00133656031047675 -0.00133656031047675 NA NA no change no change NA NA frameshift CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_T4VKB29K -BS_8ZP3CBQA LMNTD1--LMNTD1 5.50192560712276 5.50192560712276 NA NA differentially expressed differentially expressed NA NA frameshift LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_T4VKB29K -BS_8ZP3CBQA ECT2L--ECT2L 8.43721410497273 8.43721410497273 NA NA differentially expressed differentially expressed NA NA frameshift ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_T4VKB29K -BS_8ZS9F31R GAS2--RB1CC1/NPBWR1 8.54583403787482 0.967003107816341 NA -0.50891864205558 differentially expressed no change NA no change frameshift GAS2 NA RB1CC1 NPBWR1 NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_DW2XRPC9 -BS_8ZS9F31R TCF4--TCP10 0.154747989030989 19.8108198850542 NA NA no change differentially expressed NA NA in-frame TCF4 NA TCP10 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DW2XRPC9 -BS_8ZS9F31R FOXN3--EFCAB11 4.53842008798213 1.66738115973406 NA NA differentially expressed no change NA NA frameshift FOXN3 NA EFCAB11 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DW2XRPC9 -BS_8ZS9F31R GAS2--RB1CC1 8.54583403787482 0.967003107816341 NA NA differentially expressed no change NA NA frameshift GAS2 NA RB1CC1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_DW2XRPC9 -BS_8ZS9F31R FARSA--ERCC2 1.37931794162161 3.1596950122702 NA NA no change differentially expressed NA NA in-frame FARSA NA ERCC2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_DW2XRPC9 -BS_8ZS9F31R PRKAA1--OIP5 2.00589339257116 13.9501453664601 NA NA differentially expressed differentially expressed NA NA frameshift PRKAA1 NA OIP5 NA TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_DW2XRPC9 -BS_8ZY4GST0 TMEM165--CHIC2 1.31788203480811 5.42452490377513 NA NA no change differentially expressed NA NA in-frame TMEM165 NA CHIC2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_V1HNAC2Q -BS_8ZY4GST0 LCORL--SCFD2 4.2226087994615 4.43285796389504 NA NA differentially expressed differentially expressed NA NA in-frame LCORL NA SCFD2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_V1HNAC2Q -BS_8ZY4GST0 LNX1--KIT 2.42954105442852 1.92423571962442 NA NA differentially expressed no change NA NA frameshift LNX1 NA KIT NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_V1HNAC2Q -BS_8ZY4GST0 SH3GL1--AP001001.2/AP002001.1 1.24847192030262 NA NA NA no change NA NA NA frameshift SH3GL1 NA AP001001.2 AP002001.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_V1HNAC2Q -BS_8ZY4GST0 CBX4--ILF3 2.13604409105834 1.50489842678545 NA NA differentially expressed no change NA NA frameshift CBX4 NA ILF3 NA Oncogene NA NA NA NA ARRIBA 1 PT_V1HNAC2Q -BS_90B22NGP PLEKHA8--PLEKHA8 1.36511716114852 1.36511716114852 NA NA no change no change NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_JCECCFPB -BS_90B22NGP ERC2--ERC2 2.15103744255133 2.15103744255133 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_JCECCFPB -BS_90B22NGP MTSS1--MTSS1 3.40325648429872 3.40325648429872 NA NA differentially expressed differentially expressed NA NA frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_JCECCFPB -BS_912NX4Y0 KCNH1--AL590132.1 3.22660645268006 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_1P436YMM -BS_912NX4Y0 KCNH1--AL590132.1 3.22660645268006 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_1P436YMM -BS_912NX4Y0 ERC2--ERC2 2.02285757782527 2.02285757782527 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_1P436YMM -BS_912NX4Y0 AL590132.1--KCNH1 NA 3.22660645268006 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_1P436YMM -BS_912NX4Y0 KCNH1--KCNH1 3.22660645268006 3.22660645268006 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_1P436YMM -BS_912NX4Y0 AL590132.1--KCNH1 NA 3.22660645268006 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_1P436YMM -BS_91VYM11A SMG1--OR8B10P/AP000916.2 1.06033108329153 -0.282211320979534 NA NA no change no change NA NA frameshift SMG1 NA OR8B10P AP000916.2 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_91VYM11A BCAT1--TNN 0.681322084596187 19.3075405584804 NA NA no change differentially expressed NA NA frameshift BCAT1 NA TNN NA NA Oncogene NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_91VYM11A RBM5--SUCLG2 -0.926439252007122 0.36925047604763 NA NA no change no change NA NA frameshift RBM5 NA SUCLG2 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_92VDQ0NE ERC2--ERC2 2.96491721347898 2.96491721347898 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DFQAH7RS -BS_92VDQ0NE KCNH1--KCNH1 2.3338658135749 2.3338658135749 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DFQAH7RS -BS_92VDQ0NE FPGT-TNNI3K--FPGT-TNNI3K 2.5421519900179 2.5421519900179 NA NA differentially expressed differentially expressed NA NA frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_DFQAH7RS -BS_92VDQ0NE KCNH1--AL590132.1 2.3338658135749 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DFQAH7RS -BS_92VDQ0NE CSMD3--CSMD3 2.36360182844287 2.36360182844287 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_DFQAH7RS -BS_92VDQ0NE AL590132.1--KCNH1 NA 2.3338658135749 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DFQAH7RS -BS_92VDQ0NE NBEA--AC023310.4/NBEAP1 0.476684237090947 NA NA 1.21072255058853 no change NA NA no change frameshift NBEA NA AC023310.4 NBEAP1 CosmicCensus NA NA Oncogene NA ARRIBA 1 PT_DFQAH7RS -BS_92VDQ0NE KCNH1--AL590132.1 2.3338658135749 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DFQAH7RS -BS_92VDQ0NE AL590132.1--KCNH1 NA 2.3338658135749 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DFQAH7RS -BS_9755PSCS ATRX--ATP7A 2.54216929511301 8.2087383695188 NA NA differentially expressed differentially expressed NA NA frameshift ATRX NA ATP7A NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_KBA2VNA2 -BS_97M1E2DW HNRNPA2B1--MET -0.691608512068411 5.80988552352964 NA NA no change differentially expressed NA NA in-frame HNRNPA2B1 NA MET NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_B38P3Y5T -BS_97M1E2DW HNRNPA2B1--MET -0.691608512068411 5.80988552352964 NA NA no change differentially expressed NA NA frameshift HNRNPA2B1 NA MET NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_B38P3Y5T -BS_983Z6CA6 ERMN--ROR2 -0.529866537175657 3.09538345704035 NA NA no change differentially expressed NA NA frameshift ERMN NA ROR2 NA NA Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA ARRIBA 1 PT_3KM9W8S8 -BS_996ZS2A4 ADAMTS14--PRF1/ADAMTS14 -0.429037531889779 6.36731376458341 NA -0.429037531889779 no change differentially expressed NA no change frameshift ADAMTS14 NA PRF1 ADAMTS14 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_RX1EWBP9 -BS_996ZS2A4 MYH9--EIF3D 4.41360016520186 2.24604824716662 NA NA differentially expressed differentially expressed NA NA in-frame MYH9 NA EIF3D NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RX1EWBP9 -BS_996ZS2A4 SFMBT2--LINC00707/AL392086.1 4.20330659246651 2.88843885191453 NA NA differentially expressed differentially expressed NA NA frameshift SFMBT2 NA LINC00707 AL392086.1 Oncogene NA NA NA NA ARRIBA 1 PT_RX1EWBP9 -BS_99B1XRZQ EPHA4--PGM2 -0.335809191913048 3.00115954644905 NA NA no change differentially expressed NA NA in-frame EPHA4 NA PGM2 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_3VCS1PPF -BS_99B1XRZQ NEK11--TMEM108 3.60573534242749 1.00643608129447 NA NA differentially expressed no change NA NA frameshift NEK11 NA TMEM108 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_3VCS1PPF -BS_9BJARSX3 BRINP1--BRINP1 -1.26544843510156 -1.26544843510156 NA NA no change no change NA NA frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_41QYPSGV -BS_9CA93S6D DDX10--SNORD39/AP003049.2 -0.168620715166579 NA NA NA no change NA NA NA frameshift DDX10 NA SNORD39 AP003049.2 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_HSHPZAEZ -BS_9DFBHHB5 CSMD3--CSMD3 3.68956377252372 3.68956377252372 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_KMHGNCNR -BS_9DFBHHB5 PLEKHA8--PLEKHA8 0.804175150092281 0.804175150092281 NA NA no change no change NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_KMHGNCNR -BS_9DZ253JY RFX4--RFX4 -0.580181964284706 -0.580181964284706 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_N8W26H19 -BS_9DZ253JY NRXN2--NRXN2 -0.748509923040552 -0.748509923040552 NA NA no change no change NA NA frameshift NRXN2 NA NRXN2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_N8W26H19 -BS_9DZ253JY MTSS1--MTSS1 -0.844867063996434 -0.844867063996434 NA NA no change no change NA NA frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_N8W26H19 -BS_9F09XV62 AL590132.1--KCNH1 NA 1.36555473307387 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_C2VY5NM6 -BS_9F09XV62 KCNH1--KCNH1 1.36555473307387 1.36555473307387 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_C2VY5NM6 -BS_9F09XV62 KCNH1--AL590132.1 1.36555473307387 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_C2VY5NM6 -BS_9F09XV62 AL590132.1--KCNH1 NA 1.36555473307387 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_C2VY5NM6 -BS_9F09XV62 MICALL2--HIPK2 -0.0461467070259852 2.83438417621037 NA NA no change differentially expressed NA NA in-frame MICALL2 NA HIPK2 NA NA Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA ARRIBA 1 PT_C2VY5NM6 -BS_9F09XV62 KCNH1--AL590132.1 1.36555473307387 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_C2VY5NM6 -BS_9GJ23RHH PHLPP1--GDAP1 -2.03252620271219 -1.67976615816774 NA NA differentially expressed no change NA NA in-frame PHLPP1 NA GDAP1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_M2J30CF7 -BS_9GJ23RHH KMT2A--MLLT10 1.39631892354767 4.66454031762148 NA NA no change differentially expressed NA NA in-frame KMT2A NA MLLT10 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_M2J30CF7 -BS_9GJ23RHH MLLT10--AP001267.3 4.66454031762148 NA NA NA differentially expressed NA NA NA frameshift MLLT10 NA AP001267.3 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M2J30CF7 -BS_9GJ23RHH SIK3--MLLT10 -2.27469873843125 4.66454031762148 NA NA differentially expressed differentially expressed NA NA in-frame SIK3 NA MLLT10 NA Oncogene, Kinase CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_M2J30CF7 -BS_9GJ23RHH MLLT10--JPH1 4.66454031762148 -1.29887364809367 NA NA differentially expressed no change NA NA frameshift MLLT10 NA JPH1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M2J30CF7 -BS_9M5XJ10G ST18--ST18 1.72247097971399 1.72247097971399 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VH6S71AC -BS_9NJHQE9F CDH20--CDH20 -1.13190495981598 -1.13190495981598 NA NA no change no change NA NA frameshift CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_VJZN69T9 -BS_9NZ2D6AD RPS6KA5--CCDC88C 1.6491090831349 2.59625780402617 NA NA no change differentially expressed NA NA frameshift RPS6KA5 NA CCDC88C NA Kinase NA NA NA NA ARRIBA 1 PT_9YMRNZHH -BS_9NZ2D6AD MYCN--AC010880.1 16.5788596595211 NA NA NA differentially expressed NA NA NA frameshift MYCN NA AC010880.1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9YMRNZHH -BS_9NZ2D6AD KNTC1--CLIP1 4.86143082342917 1.05742775258834 NA NA differentially expressed no change NA NA in-frame KNTC1 NA CLIP1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_9YMRNZHH -BS_9Q6Z6VJC CSMD3--CSMD3 3.37203857586554 3.37203857586554 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_M5HDHQNQ -BS_9Q6Z6VJC KIAA1549--BRAF 5.38928159274473 1.42356191819153 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_M5HDHQNQ -BS_9RT63JD9 ERC2--ERC2 1.75390213150833 1.75390213150833 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AEDWCP8Z -BS_9SJWWYQ4 KIAA1549--BRAF 4.23217148914235 1.73158487684077 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_3CVMBGD7 -BS_9SJWWYQ4 CSMD3--CSMD3 3.93673087058962 3.93673087058962 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_3CVMBGD7 -BS_9XVACXP0 CCDC88A--ALK 2.26469536393717 6.96445284389594 NA NA differentially expressed differentially expressed NA NA in-frame CCDC88A NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_387VK1T9 -BS_9XWJ88Q1 ANKH--FOS 5.20305884039585 1.68842694380057 NA NA differentially expressed no change NA NA in-frame ANKH NA FOS NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_DEKWG1QG -BS_9XWJ88Q1 ELMO1--EPDR1 0.222224080822055 1.09659774210168 NA NA no change no change NA NA frameshift ELMO1 NA EPDR1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DEKWG1QG -BS_9XWJ88Q1 FOS--ANKH 1.68842694380057 5.20305884039585 NA NA no change differentially expressed NA NA frameshift FOS NA ANKH NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DEKWG1QG -BS_A0DYVX9J CCND2--AL451164.2/AL451164.1 11.4918089677634 NA NA NA differentially expressed NA NA NA frameshift CCND2 NA AL451164.2 AL451164.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J DENND4C--TEK 4.48650502939247 0.479492921976698 NA NA differentially expressed no change NA NA frameshift DENND4C NA TEK NA NA Oncogene, Kinase NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J WNK1--LARP4B 3.41455792388367 2.91661732495298 NA NA differentially expressed differentially expressed NA NA frameshift WNK1 NA LARP4B NA Kinase, Kinase CosmicCensus NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J TMEFF1--PLPP7/PRRC2B 4.38822269207864 NA NA 5.11313374374537 differentially expressed NA NA differentially expressed frameshift TMEFF1 NA PLPP7 PRRC2B TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J RXRA--KDM4C 2.08644933112556 1.69501395012742 NA NA differentially expressed no change NA NA frameshift RXRA NA KDM4C NA TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J MYL6--LIMA1 2.70047870445778 1.70226840858618 NA NA differentially expressed no change NA NA frameshift MYL6 NA LIMA1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J CCND2--ADARB2 11.4918089677634 3.32854849916965 NA NA differentially expressed differentially expressed NA NA in-frame CCND2 NA ADARB2 NA CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J WNK1--PRKG1 3.41455792388367 -0.804067503575517 NA NA differentially expressed no change NA NA frameshift WNK1 NA PRKG1 NA Kinase, Kinase Kinase NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J TMEM268--EHMT1 NA 0.667412004356463 NA NA NA no change NA NA frameshift TMEM268 NA EHMT1 NA NA Oncogene NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J ANKRD52--PRKG1 3.25538171204634 -0.804067503575517 NA NA differentially expressed no change NA NA frameshift ANKRD52 NA PRKG1 NA NA Kinase NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J NTNG2--LPAR1 1.53051965142487 -2.69518811097313 NA NA no change differentially expressed NA NA frameshift NTNG2 NA LPAR1 NA NA Oncogene NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J MARCH9--MARS 3.07968714354907 2.59558396286173 NA NA differentially expressed differentially expressed NA NA frameshift MARCH9 NA MARS NA NA Oncogene NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J LRMP--AC069208.1 -0.540915963235278 NA NA NA no change NA NA NA frameshift LRMP NA AC069208.1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J ERC1--AC069208.1 3.07162344091614 NA NA NA differentially expressed NA NA NA frameshift ERC1 NA AC069208.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J KDM4C--RXRA 1.69501395012742 2.08644933112556 NA NA no change differentially expressed NA NA frameshift KDM4C NA RXRA NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J EHMT1--C9orf135 0.667412004356463 3.70586894264502 NA NA no change differentially expressed NA NA in-frame EHMT1 NA C9orf135 NA Oncogene NA NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J GNAQ--APBA1 -0.412084422678318 -2.04151159402173 NA NA no change differentially expressed NA NA frameshift GNAQ NA APBA1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J TMEFF1--PRRC2B 4.38822269207864 5.11313374374537 NA NA differentially expressed differentially expressed NA NA in-frame TMEFF1 NA PRRC2B NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A0DYVX9J TMEFF1--PRRC2B 4.38822269207864 5.11313374374537 NA NA differentially expressed differentially expressed NA NA frameshift TMEFF1 NA PRRC2B NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_QDGVJKE0 -BS_A13BMEF5 KIAA1549--BRAF 5.52790558109922 1.9481244445974 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_TB8HPJBN -BS_A13BMEF5 MCM9--MCM9 3.17880213451907 3.17880213451907 NA NA differentially expressed differentially expressed NA NA in-frame MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_TB8HPJBN -BS_A14Z8BBK RAB3GAP2--PLCH2 2.21648720638974 1.80640909936668 NA NA differentially expressed no change NA NA in-frame RAB3GAP2 NA PLCH2 NA NA Oncogene NA NA NA ARRIBA 1 PT_G1QNGVCZ -BS_A14Z8BBK JAK2--JAK2 2.28880682628116 2.28880682628116 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_G1QNGVCZ -BS_A1VEGWTR KIAA1549--BRAF 5.12974520228616 1.83839423443223 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_5ABCFCSK -BS_A3QZB9Y2 LMO7--RNF219-AS1 -0.0797194985908457 -1.050467715346 NA NA no change no change NA NA frameshift LMO7 NA RNF219-AS1 NA Oncogene NA NA NA NA ARRIBA 1 PT_HT4HJXY6 -BS_A3QZB9Y2 PLCE1--PIPSL/PLCE1 6.61929356438305 10.1740870314455 NA 6.61929356438305 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_HT4HJXY6 -BS_A3QZB9Y2 CHST14--PAWR 5.95088721664141 2.26735144856832 NA NA differentially expressed differentially expressed NA NA frameshift CHST14 NA PAWR NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_HT4HJXY6 -BS_ABYF92Z9 PLCE1--PIPSL/PLCE1 3.98252658926009 5.91637142770597 NA 3.98252658926009 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_6MB6RED3 -BS_AD4JPN9Q ERC2--ERC2 1.24131505782358 1.24131505782358 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_17W3GJPT -BS_AG3D3435 RFX4--RFX4 1.74775160032409 1.74775160032409 NA NA no change no change NA NA in-frame RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_7YSCM82T -BS_AG3D3435 ECT2L--ECT2L 8.5995084526027 8.5995084526027 NA NA differentially expressed differentially expressed NA NA frameshift ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_7YSCM82T -BS_AG4H9S3J KCNH1--AL590132.1 1.94576954875202 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_NFDHYPGT -BS_AG4H9S3J AL590132.1--KCNH1 NA 1.94576954875202 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_NFDHYPGT -BS_AG4H9S3J ERC2--ERC2 1.97330659492886 1.97330659492886 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NFDHYPGT -BS_AG4H9S3J KCNH1--KCNH1 1.94576954875202 1.94576954875202 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NFDHYPGT -BS_AGTPCRR4 FAM135B--FAM135B 1.57428020777411 1.57428020777411 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_TS0H697Y -BS_AGTPCRR4 RFX4--RFX4 2.88901290743377 2.88901290743377 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_TS0H697Y -BS_AHEFXG7W LTBP1--DDX1/AC008278.1 6.08519979800709 -0.190386631315136 NA NA differentially expressed no change NA NA frameshift LTBP1 NA DDX1 AC008278.1 NA Oncogene NA NA NA ARRIBA 1 PT_VY45XTT7 -BS_AJ6X83G5 AL590132.1--KCNH1 NA 4.34563609346822 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_TRXF649Z -BS_AJ6X83G5 AL590132.1--KCNH1 NA 4.34563609346822 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_TRXF649Z -BS_AJ6X83G5 ERC2--ERC2 3.27479483775499 3.27479483775499 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_TRXF649Z -BS_AJ6X83G5 KCNH1--AL590132.1 4.34563609346822 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_TRXF649Z -BS_AJ6X83G5 KCNH1--AL590132.1 4.34563609346822 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_TRXF649Z -BS_AJ6X83G5 KCNH1--KCNH1 4.34563609346822 4.34563609346822 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_TRXF649Z -BS_AKRHBPNZ FGFR2--SHTN1 0.80343970516797 -0.836270432838888 NA NA no change no change NA NA in-frame FGFR2 NA SHTN1 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus NA NA NA ARRIBA 1 PT_3NM45TQ8 -BS_AM70R8RG JAK2--JAK2 0.701024288148947 0.701024288148947 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_PABK01H0 -BS_AM70R8RG NTRK3--NTRK3 4.48318027067348 4.48318027067348 NA NA differentially expressed differentially expressed NA NA frameshift NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_PABK01H0 -BS_AMQGM1V9 AL590132.1--KCNH1 NA 2.39846041535519 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_J3B812DT -BS_AMQGM1V9 KCNH1--AL590132.1 2.39846041535519 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_J3B812DT -BS_AMQGM1V9 ERC2--ERC2 3.08906103639255 3.08906103639255 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_J3B812DT -BS_AMQGM1V9 MYT1L--MYT1L 1.84126464611398 1.84126464611398 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_J3B812DT -BS_AMQGM1V9 KCNH1--AL590132.1 2.39846041535519 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_J3B812DT -BS_AMQGM1V9 JAK2--JAK2 1.50846115183583 1.50846115183583 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_J3B812DT -BS_AMQGM1V9 AL590132.1--KCNH1 NA 2.39846041535519 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_J3B812DT -BS_AMQGM1V9 PLEKHA8--PLEKHA8 0.861801841317374 0.861801841317374 NA NA no change no change NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_J3B812DT -BS_AMQGM1V9 CSMD3--CSMD3 3.00214034076767 3.00214034076767 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_J3B812DT -BS_AMQGM1V9 KCNH1--KCNH1 2.39846041535519 2.39846041535519 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_J3B812DT -BS_AMZ70B6F NTRK3--NTRK3 3.93357239622448 3.93357239622448 NA NA differentially expressed differentially expressed NA NA frameshift NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_3VQEVNDD -BS_AMZ70B6F POU6F2--POU6F2 10.1224248132471 10.1224248132471 NA NA differentially expressed differentially expressed NA NA frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_3VQEVNDD -BS_AP0SZ364 CSMD3--CSMD3 3.82967471343461 3.82967471343461 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PGVQ4XRZ -BS_AP0SZ364 PID1--RAF1 0.670408505812708 0.194351157118852 NA NA no change no change NA NA in-frame PID1 NA RAF1 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_PGVQ4XRZ -BS_ARFQ1WG3 MYT1L--MYT1L -0.0217603194287894 -0.0217603194287894 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_8GW4J4TD -BS_ARFQ1WG3 CSMD3--CSMD3 4.68830628342787 4.68830628342787 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_8GW4J4TD -BS_AWH9757B KCNH1--KCNH1 2.54822849466082 2.54822849466082 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_59FJRPVX -BS_AWH9757B ERC2--ERC2 1.92647073025803 1.92647073025803 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_59FJRPVX -BS_AWH9757B KCNH1--AL590132.1 2.54822849466082 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_59FJRPVX -BS_AWH9757B KCNH1--AL590132.1 2.54822849466082 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_59FJRPVX -BS_AWH9757B AL590132.1--KCNH1 NA 2.54822849466082 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_59FJRPVX -BS_AWH9757B CHD7--MYBL1 2.63749534606694 6.04663838138519 NA NA differentially expressed differentially expressed NA NA frameshift CHD7 NA MYBL1 NA NA Oncogene, TranscriptionFactor, Oncogene NA NA NA ARRIBA 1 PT_59FJRPVX -BS_AWH9757B MYBL1--NSMAF/TOX 6.04663838138519 0.652245952893013 NA -0.297808099648475 differentially expressed no change NA no change frameshift MYBL1 NA NSMAF TOX Oncogene, TranscriptionFactor, Oncogene NA NA NA NA ARRIBA 1 PT_59FJRPVX -BS_AWH9757B AL590132.1--KCNH1 NA 2.54822849466082 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_59FJRPVX -BS_AWH9757B MYBL1--AC079015.1 6.04663838138519 NA NA NA differentially expressed NA NA NA frameshift MYBL1 NA AC079015.1 NA Oncogene, TranscriptionFactor, Oncogene NA NA NA NA ARRIBA 1 PT_59FJRPVX -BS_AWH9757B CHD7--MYBL1 2.63749534606694 6.04663838138519 NA NA differentially expressed differentially expressed NA NA in-frame CHD7 NA MYBL1 NA NA Oncogene, TranscriptionFactor, Oncogene NA NA NA ARRIBA 1 PT_59FJRPVX -BS_AWH9757B ARHGAP35--AP2S1/ARHGAP35 3.56262043327527 0.147336688025593 NA 3.56262043327527 differentially expressed no change NA differentially expressed frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_59FJRPVX -BS_AZN38B7V AES--MIA -1.31027844425873 3.11374905811767 NA NA no change differentially expressed NA NA frameshift AES NA MIA NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_ZCXS29JJ -BS_AZN38B7V DNAJA4--HMG20A -2.57070034812216 3.53021239196671 NA NA differentially expressed differentially expressed NA NA in-frame DNAJA4 NA HMG20A NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_ZCXS29JJ -BS_AZN38B7V AES--SNRPA/MIA/MIA-RAB4B -1.31027844425873 -0.237346645127505 NA 3.11374905811767 no change no change NA differentially expressed frameshift AES NA SNRPA MIA NA NA NA TumorSuppressorGene NA ARRIBA 1 PT_ZCXS29JJ -BS_AZN38B7V ZNF880--ANKRD24 2.29399523984672 -1.5230548371722 NA NA differentially expressed no change NA NA frameshift ZNF880 NA ANKRD24 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ZCXS29JJ -BS_AZN38B7V NECTIN2--SEMA4B NA 1.78306566574484 NA NA NA no change NA NA in-frame NECTIN2 NA SEMA4B NA NA Oncogene NA NA NA ARRIBA 1 PT_ZCXS29JJ -BS_AZN38B7V DNAJA4--HMG20A -2.57070034812216 3.53021239196671 NA NA differentially expressed differentially expressed NA NA frameshift DNAJA4 NA HMG20A NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_ZCXS29JJ -BS_AZN38B7V ARHGAP35--SCAPER 0.182509463647499 -2.5774548866531 NA NA no change differentially expressed NA NA frameshift ARHGAP35 NA SCAPER NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ZCXS29JJ -BS_AZN38B7V PTCH1--GAS1RR 1.12143649946739 NA NA NA no change NA NA NA frameshift PTCH1 NA GAS1RR NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_ZCXS29JJ -BS_AZN38B7V NECTIN2--SEMA4B NA 1.78306566574484 NA NA NA no change NA NA frameshift NECTIN2 NA SEMA4B NA NA Oncogene NA NA NA ARRIBA 1 PT_ZCXS29JJ -BS_AZN38B7V DAPK3--AC008507.1/AC005597.1 -1.62814533294773 NA NA 0.26289929171415 no change NA NA no change frameshift DAPK3 NA AC008507.1 AC005597.1 Kinase, TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_ZCXS29JJ -BS_AZN38B7V RECK--SNRPD3 3.77703808170719 0.303300575684859 NA NA differentially expressed no change NA NA frameshift RECK NA SNRPD3 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_ZCXS29JJ -BS_AZN38B7V PTCH1--AL513318.2 1.12143649946739 NA NA NA no change NA NA NA frameshift PTCH1 NA AL513318.2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_ZCXS29JJ -BS_B1C6GZ84 DEAF1--AP000593.2/AP000593.1 -0.550215465641146 NA NA NA no change NA NA NA frameshift DEAF1 NA AP000593.2 AP000593.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_2QZJ4T95 -BS_B1C6GZ84 SEPT11--FAM172A 0.571793292814118 2.59754786589594 NA NA no change differentially expressed NA NA in-frame SEPT11 NA FAM172A NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_2QZJ4T95 -BS_B1C6GZ84 CTNND2--RPS17P11/MFSD4BP1 0.300610538947561 -0.180133778386322 NA NA no change no change NA NA frameshift CTNND2 NA RPS17P11 MFSD4BP1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_2QZJ4T95 -BS_B1C6GZ84 SCFD2--PDGFRA 11.5398634636459 8.58831659116166 NA NA differentially expressed differentially expressed NA NA in-frame SCFD2 NA PDGFRA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_2QZJ4T95 -BS_B1C6GZ84 ABCC8--PTH/HMGN2P36 -2.17747024545642 -0.125014002859089 NA -0.0592010336834036 differentially expressed no change NA no change frameshift ABCC8 NA PTH HMGN2P36 NA Oncogene NA NA NA ARRIBA 1 PT_2QZJ4T95 -BS_B1C6GZ84 DUSP8--AHNAK -1.48115730966727 1.04703134350942 NA NA no change no change NA NA frameshift DUSP8 NA AHNAK NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_2QZJ4T95 -BS_B1C6GZ84 SCFD2--PDGFRA 11.5398634636459 8.58831659116166 NA NA differentially expressed differentially expressed NA NA frameshift SCFD2 NA PDGFRA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_2QZJ4T95 -BS_B1C6GZ84 TRIO--CDH9 2.27878327023543 -1.11413912084661 NA NA differentially expressed no change NA NA frameshift TRIO NA CDH9 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_2QZJ4T95 -BS_B1C6GZ84 CHIC2--PDGFRA 9.66168794480973 8.58831659116166 NA NA differentially expressed differentially expressed NA NA in-frame CHIC2 NA PDGFRA NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_2QZJ4T95 -BS_B1C6GZ84 MARK2--CNTN5 1.39776527204114 -0.674346345241447 NA NA no change no change NA NA frameshift MARK2 NA CNTN5 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_2QZJ4T95 -BS_B1C6GZ84 SCFD2--GSX2/RPL22P13 11.5398634636459 4.69037994662461 NA NA differentially expressed differentially expressed NA NA frameshift SCFD2 NA GSX2 RPL22P13 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_2QZJ4T95 -BS_B1C6GZ84 SSBP2--AC010266.2/AC010266.1 -1.19351412088648 NA NA NA no change NA NA NA frameshift SSBP2 NA AC010266.2 AC010266.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_2QZJ4T95 -BS_B1C6GZ84 CHIC2--PDGFRA 9.66168794480973 8.58831659116166 NA NA differentially expressed differentially expressed NA NA frameshift CHIC2 NA PDGFRA NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_2QZJ4T95 -BS_B1C6GZ84 TRIO--ELL2 2.27878327023543 0.72278389980231 NA NA differentially expressed no change NA NA frameshift TRIO NA ELL2 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_2QZJ4T95 -BS_B1C6GZ84 NRG3--CCND2 0.626832933423007 9.10592306082471 NA NA no change differentially expressed NA NA frameshift NRG3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2QZJ4T95 -BS_B1C6GZ84 EWSR1--AC026477.1/AC108114.1 0.604480325664079 NA NA NA no change NA NA NA frameshift EWSR1 NA AC026477.1 AC108114.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_2QZJ4T95 -BS_B1HVNV0T CSMD3--CSMD3 3.35188637502363 3.35188637502363 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_FYECBRPP -BS_B1HVNV0T ERC2--ERC2 1.87721172435107 1.87721172435107 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_FYECBRPP -BS_B1HVNV0T MYT1L--MYT1L 1.08175524778127 1.08175524778127 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_FYECBRPP -BS_B24PKKQB SEZ6L2--MYH9 0.681998679613159 5.57950384111599 NA NA no change differentially expressed NA NA frameshift SEZ6L2 NA MYH9 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_596H0BQF -BS_B3M5SGPA NFIB--FOCAD 3.19677770454228 -0.696274590358608 NA NA differentially expressed no change NA NA frameshift NFIB NA FOCAD NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_4XVA57J7 -BS_B61168DE ARFGAP1--MAFB -0.485123375825252 2.50129186628968 NA NA no change differentially expressed NA NA frameshift ARFGAP1 NA MAFB NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_1NN9AW39 -BS_B61168DE INPP4B--GAB1 6.24864998162747 2.73220288890374 NA NA differentially expressed differentially expressed NA NA in-frame INPP4B NA GAB1 NA TumorSuppressorGene Oncogene NA NA NA ARRIBA 1 PT_1NN9AW39 -BS_B61168DE BMP2--C20orf78/AL135936.1 2.32183105539529 -0.113476013694111 NA NA differentially expressed no change NA NA frameshift BMP2 NA C20orf78 AL135936.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1NN9AW39 -BS_B6M763JS RFX4--RFX4 -0.362160799744141 -0.362160799744141 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_QT3MK7BZ -BS_B741RZY9 NEK5--AC090001.1 6.09521353286245 NA NA NA differentially expressed NA NA NA frameshift NEK5 NA AC090001.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_ZS2YDFBE -BS_B741RZY9 FBXL13--FBXL13 12.7084361964394 12.7084361964394 NA NA differentially expressed differentially expressed NA NA in-frame FBXL13 NA FBXL13 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_ZS2YDFBE -BS_B741RZY9 DNAH9--DNAH9 4.08693172674674 4.08693172674674 NA NA differentially expressed differentially expressed NA NA frameshift DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZS2YDFBE -BS_B741RZY9 LMNTD1--LMNTD1 7.96119634712886 7.96119634712886 NA NA differentially expressed differentially expressed NA NA frameshift LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_ZS2YDFBE -BS_B741RZY9 RFX4--RFX4 0.966518255434 0.966518255434 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ZS2YDFBE -BS_B741RZY9 ECT2L--ECT2L 12.8360252706434 12.8360252706434 NA NA differentially expressed differentially expressed NA NA frameshift ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_ZS2YDFBE -BS_B7QS4DHK SPARC--LTBP4 2.65713908218208 5.39327070646788 NA NA differentially expressed differentially expressed NA NA in-frame SPARC NA LTBP4 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_S4YNE17X -BS_B7QS4DHK POU2F1--POU2F1 1.46712409815989 1.46712409815989 NA NA no change no change NA NA in-frame POU2F1 NA POU2F1 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_S4YNE17X -BS_B7X8VXQ3 KIAA1549--BRAF 3.4392924056729 1.73287394341899 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_FAD8FQ6S -BS_B8T7M0WV ERC2--ERC2 0.835999516027625 0.835999516027625 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_R1N5M7NH -BS_B9V8RGTA EWSR1--FLI1 0.326563147480939 4.25291256554405 NA NA no change differentially expressed NA NA frameshift EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_J50NZYZF -BS_B9V8RGTA EWSR1--FLI1 0.326563147480939 4.25291256554405 NA NA no change differentially expressed NA NA in-frame EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_J50NZYZF -BS_BB0YW800 ERC2--ERC2 0.249009241034361 0.249009241034361 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XCX9W17B -BS_BC936YNZ PID1--BRAF 1.12235864538734 1.80754609393609 NA NA no change no change NA NA frameshift PID1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_KHX1WQ4H -BS_BC936YNZ BRAF--PID1 1.80754609393609 1.12235864538734 NA NA no change no change NA NA in-frame BRAF NA PID1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_KHX1WQ4H -BS_BC936YNZ PID1--BRAF 1.12235864538734 1.80754609393609 NA NA no change no change NA NA in-frame PID1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_KHX1WQ4H -BS_BHR08WGW ERC2--ERC2 -0.339132496052811 -0.339132496052811 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_6TZR2DH1 -BS_BJDNWMJH ERBB4--ERBB4/AC093865.1 1.61935660616203 1.61935660616203 NA NA no change no change NA NA frameshift ERBB4 NA ERBB4 AC093865.1 Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_KVFS3Z2Q -BS_BJDNWMJH RFX4--RFX4 2.06979653086977 2.06979653086977 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_KVFS3Z2Q -BS_BKQZ550R DNAJC25--ZNF367 -1.69513676195163 1.00404178396865 NA NA no change no change NA NA frameshift DNAJC25 NA ZNF367 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_41WETNRC -BS_BKQZ550R DNAJC25-GNG10--ZNF367 -1.57286385797839 1.00404178396865 NA NA no change no change NA NA frameshift DNAJC25-GNG10 NA ZNF367 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_41WETNRC -BS_BKQZ550R TMEFF1--RPSAP49/SPIN1 -0.687058892276533 NA NA 0.246782123687613 no change NA NA no change frameshift TMEFF1 NA RPSAP49 SPIN1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_41WETNRC -BS_BKQZ550R KANK1--NTRK2 2.49113745904729 0.679926085371086 NA NA differentially expressed no change NA NA in-frame KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA ARRIBA 1 PT_41WETNRC -BS_BKR4E30C CNTN4--CNTN4 -0.694916042376779 -0.694916042376779 NA NA no change no change NA NA in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_E3S6H59E -BS_BKR4E30C ERC2--ERC2 0.839646024262393 0.839646024262393 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_E3S6H59E -BS_BKR4E30C KCNH1--AL590132.1 2.25897054304064 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_E3S6H59E -BS_BKR4E30C WNK3--WNK3 4.10830088202697 4.10830088202697 NA NA differentially expressed differentially expressed NA NA in-frame WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_E3S6H59E -BS_BKR4E30C AL590132.1--KCNH1 NA 2.25897054304064 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_E3S6H59E -BS_BKR4E30C AL590132.1--KCNH1 NA 2.25897054304064 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_E3S6H59E -BS_BKR4E30C KCNH1--AL590132.1 2.25897054304064 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_E3S6H59E -BS_BKR4E30C KCNH1--KCNH1 2.25897054304064 2.25897054304064 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_E3S6H59E -BS_BMMY0H73 PRCC--ASH1L 1.0673354200485 0.51932845988546 NA NA no change no change NA NA frameshift PRCC NA ASH1L NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_X5TQR8V2 -BS_BMMY0H73 BPTF--CDC42EP4 0.318395230226004 1.55219699937145 NA NA no change no change NA NA frameshift BPTF NA CDC42EP4 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X5TQR8V2 -BS_BMMY0H73 PPARD--PHACTR1 1.3236803701185 -0.44697730032675 NA NA no change no change NA NA in-frame PPARD NA PHACTR1 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X5TQR8V2 -BS_BMMY0H73 ARHGEF2--CCT3 1.68612282566568 1.69629794220698 NA NA no change no change NA NA in-frame ARHGEF2 NA CCT3 NA Oncogene NA NA NA TCGAFusion ARRIBA 1 PT_X5TQR8V2 -BS_BMMY0H73 MEF2D--ATP8B2/AL162591.2 -0.236544918042292 0.595472755632336 NA NA no change no change NA NA frameshift MEF2D NA ATP8B2 AL162591.2 Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X5TQR8V2 -BS_BMMY0H73 TNIK--AL035696.3 1.1834857052103 NA NA NA no change NA NA NA frameshift TNIK NA AL035696.3 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_X5TQR8V2 -BS_BMMY0H73 NCOR2--LINC02041/SST 2.36248438304885 NA NA -1.54219562519574 differentially expressed NA NA no change frameshift NCOR2 NA LINC02041 SST CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_X5TQR8V2 -BS_BMMY0H73 MEF2D--AL162591.2/AL162591.1 -0.236544918042292 NA NA NA no change NA NA NA frameshift MEF2D NA AL162591.2 AL162591.1 Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X5TQR8V2 -BS_BMMY0H73 NTRK2--NTRK2 0.836954625198283 0.836954625198283 NA NA no change no change NA NA in-frame NTRK2 NA NTRK2 NA Oncogene, Kinase Oncogene, Kinase NA NA NA ARRIBA 1 PT_X5TQR8V2 -BS_BMMY0H73 ADAM23--AC017048.2 1.16522082849634 127.2178610415 NA NA no change differentially expressed NA NA frameshift ADAM23 NA AC017048.2 NA Oncogene NA NA NA NA ARRIBA 1 PT_X5TQR8V2 -BS_BN986DF6 KIAA1549--BRAF 4.88309780934886 2.04902757281215 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_PFA762TK -BS_BPSTSCBJ KIAA1549--BRAF 4.95123809660659 1.57217156876652 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_ATE3YRH5 -BS_BPWEFR89 POU6F2--POU6F2 12.6191076539515 12.6191076539515 NA NA differentially expressed differentially expressed NA NA frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_FN4GEEFR -BS_BSV07M7Z ST18--ST18 3.7062685411604 3.7062685411604 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_PX4E85V1 -BS_BSV07M7Z JAK2--JAK2 0.794107564048361 0.794107564048361 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_PX4E85V1 -BS_BSV07M7Z MYT1L--MYT1L 1.44418268459067 1.44418268459067 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_PX4E85V1 -BS_BSV07M7Z ZNF528--ZNF610/ZNF880 1.71357636787013 4.78166780050234 NA 3.60571950503174 no change differentially expressed NA differentially expressed frameshift ZNF528 NA ZNF610 ZNF880 TranscriptionFactor TranscriptionFactor NA TranscriptionFactor NA ARRIBA 1 PT_PX4E85V1 -BS_BVSW4GTG AC005324.4--FOXO3 NA 2.95024003948143 NA NA NA differentially expressed NA NA in-frame AC005324.4 NA FOXO3 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_DACV00WF -BS_BVSW4GTG ATXN7--FLNB 3.3323905332232 -0.0928527981694598 NA NA differentially expressed no change NA NA in-frame ATXN7 NA FLNB NA NA Oncogene NA NA NA ARRIBA 1 PT_DACV00WF -BS_BVSW4GTG ZNF286A--FOXO3 5.36957828719003 2.95024003948143 NA NA differentially expressed differentially expressed NA NA in-frame ZNF286A NA FOXO3 NA TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_DACV00WF -BS_BWBDH9GM RSF1--AP001978.1/AP001541.1 4.50786093093775 NA NA NA differentially expressed NA NA NA frameshift RSF1 NA AP001978.1 AP001541.1 Oncogene NA NA NA NA ARRIBA 1 PT_JNEV57VK -BS_BWBDH9GM PAX3--AC068489.1/AC009302.1 9.07174413870486 -0.0416358721398405 NA NA differentially expressed no change NA NA frameshift PAX3 NA AC068489.1 AC009302.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JNEV57VK -BS_BYCX6VK1 SPARC--CHI3L1 3.56774751758711 3.81362275209601 NA NA differentially expressed differentially expressed NA NA frameshift SPARC NA CHI3L1 NA TumorSuppressorGene NA NA NA NA STARFUSION 1 PT_3AWKWXEV -BS_C05FKR8X C11orf95--RELA 5.91473108899467 4.57124562858994 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_ZWY04DCR -BS_C3P5BC92 LRMDA--VTI1A NA 2.95067020054632 NA NA NA differentially expressed NA NA frameshift LRMDA NA VTI1A NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_T2M1338J -BS_C3P5BC92 VTI1A--LRMDA 2.95067020054632 NA NA NA differentially expressed NA NA NA in-frame VTI1A NA LRMDA NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_T2M1338J -BS_C41DJZ1F MBOAT2--FBLN2 2.82727196388312 6.81677358549248 NA NA differentially expressed differentially expressed NA NA frameshift MBOAT2 NA FBLN2 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_30H1KV15 -BS_C41DJZ1F ZFX--AL807742.1 6.15752660752704 NA NA NA differentially expressed NA NA NA frameshift ZFX NA AL807742.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_30H1KV15 -BS_C41DJZ1F UHMK1--AL592295.3/FCGR2A 0.197872881635349 NA NA 2.53984276341864 no change NA NA differentially expressed frameshift UHMK1 NA AL592295.3 FCGR2A Kinase NA NA NA NA ARRIBA 1 PT_30H1KV15 -BS_C51RB0YR ADAMTS18--ADAMTS18 1.46808602362305 1.46808602362305 NA NA no change no change NA NA in-frame ADAMTS18 NA ADAMTS18 NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_DMMKT7X1 -BS_C51RB0YR ZFHX4--ZFHX4 6.0419515435189 6.0419515435189 NA NA differentially expressed differentially expressed NA NA in-frame ZFHX4 NA ZFHX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_DMMKT7X1 -BS_C6SKJG3N KIAA1549--BRAF 2.72853524505195 1.3365065934867 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_XDV8W16W -BS_C6ZZ3FY5 AL590132.1--KCNH1 NA 1.17365269285413 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_X71D7G5S -BS_C6ZZ3FY5 KCNH1--AL590132.1 1.17365269285413 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_X71D7G5S -BS_C6ZZ3FY5 KCNH1--KCNH1 1.17365269285413 1.17365269285413 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_X71D7G5S -BS_C6ZZ3FY5 CAMK2D--AC093840.1/TEMN3-AS1 0.163834449254723 NA NA NA no change NA NA NA frameshift CAMK2D NA AC093840.1 TEMN3-AS1 Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_X71D7G5S -BS_C6ZZ3FY5 ERC2--ERC2 0.207920909594334 0.207920909594334 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_X71D7G5S -BS_C7A2TYAC KIAA1549--BRAF 5.19004500577718 1.64737392402353 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_JXGMAHHN -BS_C7A2TYAC CSMD3--CSMD3 4.22071879790455 4.22071879790455 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JXGMAHHN -BS_C7N3J4NW ERC2--ERC2 2.68600216532528 2.68600216532528 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_KDW5HHWQ -BS_C7N3J4NW AL590132.1--KCNH1 NA 4.52260483756419 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KDW5HHWQ -BS_C7N3J4NW TNNI3K--TNNI3K -1.33328995998294 -1.33328995998294 NA NA no change no change NA NA frameshift TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_KDW5HHWQ -BS_C7N3J4NW KCNH1--AL590132.1 4.52260483756419 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_KDW5HHWQ -BS_C7N3J4NW FPGT-TNNI3K--FPGT-TNNI3K 2.4189411713657 2.4189411713657 NA NA differentially expressed differentially expressed NA NA frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_KDW5HHWQ -BS_C7N3J4NW KCNH1--KCNH1 4.52260483756419 4.52260483756419 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_KDW5HHWQ -BS_C7N3J4NW KCNH1--AL590132.1 4.52260483756419 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_KDW5HHWQ -BS_C7N3J4NW AL590132.1--KCNH1 NA 4.52260483756419 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KDW5HHWQ -BS_C83TK159 RFWD2--TNR 1.04103402084496 4.39089956108166 NA NA no change differentially expressed NA NA frameshift RFWD2 NA TNR NA TumorSuppressorGene Oncogene NA NA NA ARRIBA 1 PT_1AAYYGGY -BS_CB6VK7PB KIAA1549--BRAF 3.85972634094652 1.62577641680774 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_JMW6Q6NH -BS_CB6VK7PB CSMD3--CSMD3 3.94296376039033 3.94296376039033 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JMW6Q6NH -BS_CGB2WS2A ERC2--ERC2 0.218988545153557 0.218988545153557 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_VJ0M4E8Y -BS_CGB2WS2A KIAA1549--BRAF 4.42596920945418 2.16836698601632 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_VJ0M4E8Y -BS_CQSAJ7BF KCNH1--AL590132.1 3.79598842231576 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_GPQJYAW4 -BS_CQSAJ7BF AL590132.1--KCNH1 NA 3.79598842231576 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_GPQJYAW4 -BS_CQSAJ7BF ERC2--ERC2 2.5389773171545 2.5389773171545 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GPQJYAW4 -BS_CQSAJ7BF KCNH1--KCNH1 3.79598842231576 3.79598842231576 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GPQJYAW4 -BS_CQSAJ7BF AL590132.1--KCNH1 NA 3.79598842231576 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_GPQJYAW4 -BS_CQSAJ7BF KCNH1--AL590132.1 3.79598842231576 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_GPQJYAW4 -BS_CREQ97QC FAM135B--FAM135B 1.82574773328825 1.82574773328825 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_BCN28SW9 -BS_CREQ97QC AL590132.1--KCNH1 NA 2.53244202934516 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_BCN28SW9 -BS_CREQ97QC AL590132.1--KCNH1 NA 2.53244202934516 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_BCN28SW9 -BS_CREQ97QC FGFR2--INA 0.994320071146606 0.094752964535984 NA NA no change no change NA NA in-frame FGFR2 NA INA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_BCN28SW9 -BS_CREQ97QC CNTN4--CNTN4 1.81696390385054 1.81696390385054 NA NA no change no change NA NA in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BCN28SW9 -BS_CREQ97QC CSMD3--CSMD3 2.67422220706879 2.67422220706879 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BCN28SW9 -BS_CREQ97QC KCNH1--KCNH1 2.53244202934516 2.53244202934516 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BCN28SW9 -BS_CREQ97QC KCNH1--AL590132.1 2.53244202934516 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_BCN28SW9 -BS_CREQ97QC KCNH1--AL590132.1 2.53244202934516 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_BCN28SW9 -BS_CREQ97QC ERC2--ERC2 3.06619482801689 3.06619482801689 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BCN28SW9 -BS_CTR5X93B RFX4--RFX4 0.695873615535818 0.695873615535818 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_XNMKQ4MR -BS_CTR5X93B SRGAP3--RAF1 1.09409651957874 0.103970964566882 NA NA no change no change NA NA in-frame SRGAP3 NA RAF1 NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_XNMKQ4MR -BS_CVGFNCBJ AL590132.1--KCNH1 NA 3.09734467623406 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_CB9PD1YP -BS_CVGFNCBJ MYT1L--MYT1L 0.966731551264612 0.966731551264612 NA NA no change no change NA NA frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_CB9PD1YP -BS_CVGFNCBJ ERC2--ERC2 1.79197314003363 1.79197314003363 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CB9PD1YP -BS_CVGFNCBJ KCNH1--AL590132.1 3.09734467623406 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CB9PD1YP -BS_CVGFNCBJ KCNH1--KCNH1 3.09734467623406 3.09734467623406 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CB9PD1YP -BS_CVGFNCBJ KCNH1--AL590132.1 3.09734467623406 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CB9PD1YP -BS_CW9QV8AG JAK2--JAK2 0.848459690572796 0.848459690572796 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_ZZ8SBJJ5 -BS_CW9QV8AG FPGT-TNNI3K--FPGT-TNNI3K 2.55712981812646 2.55712981812646 NA NA differentially expressed differentially expressed NA NA frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_ZZ8SBJJ5 -BS_CW9QV8AG ERC2--ERC2 2.04418350737689 2.04418350737689 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZZ8SBJJ5 -BS_CW9QV8AG KCNH1--KCNH1 2.11918290638347 2.11918290638347 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZZ8SBJJ5 -BS_CXVGG342 CLIP1--ROS1 0.956695457881605 6.27527441783892 NA NA no change differentially expressed NA NA in-frame CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_2WVW55DA -BS_CXVJK2FY C11orf95--RELA 3.91627764253082 4.50810336207501 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_CYVVA9AB -BS_CXVJK2FY NEK10--NEK10 2.43971876356177 2.43971876356177 NA NA differentially expressed differentially expressed NA NA frameshift NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_CYVVA9AB -BS_CXVJK2FY CDH10--CDH10 0.140539930567771 0.140539930567771 NA NA no change no change NA NA frameshift CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CYVVA9AB -BS_CXVJK2FY BMP2K--BMP2K 3.68135141487273 3.68135141487273 NA NA differentially expressed differentially expressed NA NA frameshift BMP2K NA BMP2K NA Kinase Kinase NA NA NA ARRIBA 1 PT_CYVVA9AB -BS_CZ3ER8DY KDM2A--AP001317.1/AP003038.1 -0.466496744187175 NA NA NA no change NA NA NA frameshift KDM2A NA AP001317.1 AP003038.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ECMZCNTF -BS_CZ3ER8DY RFX4--RFX4 1.49157160685246 1.49157160685246 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ECMZCNTF -BS_CZ3ER8DY NEK10--NEK10 3.16792986366846 3.16792986366846 NA NA differentially expressed differentially expressed NA NA frameshift NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_ECMZCNTF -BS_CZ3ER8DY PLCE1--PIPSL/PLCE1 5.75713619505047 9.0332009987533 NA 5.75713619505047 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_ECMZCNTF -BS_CZ3ER8DY C11orf95--RELA 3.89008167453102 4.03965363581365 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_ECMZCNTF -BS_CZ3ER8DY EFNA4--RELA/RN7SL309P 1.13268052716839 4.03965363581365 NA 4.74482062883432 no change differentially expressed NA differentially expressed frameshift EFNA4 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_ECMZCNTF -BS_CZ3ER8DY AL691442.1--RELA/RN7SL309P NA 4.03965363581365 NA 4.74482062883432 NA differentially expressed NA differentially expressed frameshift AL691442.1 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_ECMZCNTF -BS_CZ3NA7KV AAMDC--PRDM11 -1.58498672030824 1.62135370461607 NA NA no change no change NA NA frameshift AAMDC NA PRDM11 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_B5K3A4F4 -BS_CZ3NA7KV MTOR--MTOR -0.130471671298006 -0.130471671298006 NA NA no change no change NA NA in-frame MTOR NA MTOR NA CosmicCensus, Oncogene, Kinase CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_B5K3A4F4 -BS_CZ3NA7KV MEN1--AC015771.1/Y_RNA -1.61673741097542 NA NA -0.162236315085263 no change NA NA no change frameshift MEN1 NA AC015771.1 Y_RNA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_B5K3A4F4 -BS_CZ3NA7KV RTN3--ATM -1.93430254384063 2.20235699562485 NA NA no change differentially expressed NA NA frameshift RTN3 NA ATM NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_B5K3A4F4 -BS_CZ3NA7KV TRPM7--TRPM7 1.87190602505046 1.87190602505046 NA NA no change no change NA NA in-frame TRPM7 NA TRPM7 NA Kinase Kinase NA NA NA ARRIBA 1 PT_B5K3A4F4 -BS_CZ3NA7KV CHKA--SPTY2D1 -2.58159127119654 4.18103216508096 NA NA differentially expressed differentially expressed NA NA in-frame CHKA NA SPTY2D1 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_B5K3A4F4 -BS_CZ3NA7KV SYTL2--CHKA -1.32249436408835 -2.58159127119654 NA NA no change differentially expressed NA NA in-frame SYTL2 NA CHKA NA NA Oncogene, Kinase NA NA NA ARRIBA 1 PT_B5K3A4F4 -BS_CZ3NA7KV SLC1A2--EIF3F -0.254749737973694 0.486150013171827 NA NA no change no change NA NA frameshift SLC1A2 NA EIF3F NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_B5K3A4F4 -BS_CZ3NA7KV C11orf95--RELA 3.73241317135758 3.75330104585591 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_B5K3A4F4 -BS_CZ82ANWP AL590132.1--KCNH1 NA 1.64589038396749 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_868QRW9G -BS_CZ82ANWP AL590132.1--KCNH1 NA 1.64589038396749 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_868QRW9G -BS_CZ82ANWP CSMD3--CSMD3 2.73630420134679 2.73630420134679 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_868QRW9G -BS_CZ82ANWP ERC2--ERC2 1.21603862607496 1.21603862607496 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_868QRW9G -BS_CZ82ANWP KCNH1--AL590132.1 1.64589038396749 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_868QRW9G -BS_CZ82ANWP PDGFB--LRP1 5.64012209355913 2.90643787036364 NA NA differentially expressed differentially expressed NA NA in-frame PDGFB NA LRP1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_868QRW9G -BS_CZ82ANWP KCNH1--AL590132.1 1.64589038396749 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_868QRW9G -BS_CZ82ANWP KCNH1--KCNH1 1.64589038396749 1.64589038396749 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_868QRW9G -BS_CZ82ANWP DNAH7--DNAH7/STK17B -1.05774418450758 -1.05774418450758 NA -0.181585101662527 no change no change NA no change frameshift DNAH7 NA DNAH7 STK17B NA NA NA Kinase NA ARRIBA 1 PT_868QRW9G -BS_D0BGESQF RRAS2--AC018523.2 -0.569167852689654 NA NA NA no change NA NA NA frameshift RRAS2 NA AC018523.2 NA Oncogene NA NA NA NA ARRIBA 1 PT_ZN1F7RMP -BS_D0BGESQF ROBO2--FRY 2.9076557957902 1.05380349871901 NA NA differentially expressed no change NA NA in-frame ROBO2 NA FRY NA CosmicCensus NA NA NA NA ARRIBA 1 PT_ZN1F7RMP -BS_D144EJRQ MDM2--CARD8 2.11366531468313 2.27267892718441 NA NA differentially expressed differentially expressed NA NA frameshift MDM2 NA CARD8 NA CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_V8714N9H -BS_D144EJRQ RALYL--PVT1/MIR1208 0.858513771204222 0.246557674356344 NA NA no change no change NA NA frameshift RALYL NA PVT1 MIR1208 NA Oncogene NA NA NA ARRIBA 1 PT_V8714N9H -BS_D29RPBSZ TANC2--CDH13 3.10084993339276 0.19218187942394 NA NA differentially expressed no change NA NA frameshift TANC2 NA CDH13 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_JNEV57VK -BS_D2K9C7XR COBL--ZNF852 -0.875660884858534 3.51432974212811 NA NA no change differentially expressed NA NA in-frame COBL NA ZNF852 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_N673SYWW -BS_D2K9C7XR COBL--ZNF445 -0.875660884858534 3.49731127042416 NA NA no change differentially expressed NA NA frameshift COBL NA ZNF445 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_N673SYWW -BS_D2K9C7XR CDH20--CDH20 -0.210022154177675 -0.210022154177675 NA NA no change no change NA NA frameshift CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_N673SYWW -BS_D2K9C7XR CDH10--CDH10 0.619336264967629 0.619336264967629 NA NA no change no change NA NA frameshift CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_N673SYWW -BS_D3YBV7KB GOPC--ROS1 -1.95268141014346 1.24447769446565 NA NA no change no change NA NA in-frame GOPC NA ROS1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_NPPBNRVV -BS_D8N31T39 CLIP1--ROS1 0.275177016357751 3.13279079831004 NA NA no change differentially expressed NA NA in-frame CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_2WVW55DA -BS_D9GEXXHX YAP1--FAM118B 3.96489645292019 1.16332409986271 NA NA differentially expressed no change NA NA in-frame YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_AQWDQW27 -BS_D9GEXXHX FBXL7--CDH4 3.12389077222007 -1.8940610195433 NA NA differentially expressed no change NA NA in-frame FBXL7 NA CDH4 NA Oncogene TumorSuppressorGene NA NA NA ARRIBA 1 PT_AQWDQW27 -BS_D9GEXXHX DACT1--AKAP6 2.63055344761131 2.41881141311073 NA NA differentially expressed differentially expressed NA NA frameshift DACT1 NA AKAP6 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_AQWDQW27 -BS_DFGS950G ERC2--ERC2 1.85149762888438 1.85149762888438 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_JJ8QNAM8 -BS_DFWFBYSN ST18--ST18 3.49802335446178 3.49802335446178 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RJ98S3KZ -BS_DHA5FMVW ICAM1--QTRT1 2.94843913482047 0.0673425418184692 NA NA differentially expressed no change NA NA in-frame ICAM1 NA QTRT1 NA Oncogene NA NA NA NA ARRIBA 1 PT_ND34A6PR -BS_DHA5FMVW ICAM1--QTRT1 2.94843913482047 0.0673425418184692 NA NA differentially expressed no change NA NA frameshift ICAM1 NA QTRT1 NA Oncogene NA NA NA NA ARRIBA 1 PT_ND34A6PR -BS_DMZP9G1H THADA--THADA -0.712018422422327 -0.712018422422327 NA NA no change no change NA NA in-frame THADA NA THADA NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2ZXR2PDN -BS_DMZP9G1H CSMD3--CSMD3 2.26071894969288 2.26071894969288 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2ZXR2PDN -BS_DMZP9G1H AL590132.1--KCNH1 NA 3.64021074302108 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_2ZXR2PDN -BS_DMZP9G1H KCNH1--AL590132.1 3.64021074302108 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_2ZXR2PDN -BS_DMZP9G1H KCNH1--AL590132.1 3.64021074302108 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_2ZXR2PDN -BS_DMZP9G1H AL590132.1--KCNH1 NA 3.64021074302108 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_2ZXR2PDN -BS_DMZP9G1H ERC2--ERC2 2.92927527036164 2.92927527036164 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2ZXR2PDN -BS_DMZP9G1H KCNH1--KCNH1 3.64021074302108 3.64021074302108 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2ZXR2PDN -BS_DPF1CX0G DST--USP24 0.50811201209747 2.89923914185713 NA NA no change differentially expressed NA NA in-frame DST NA USP24 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZVV78QP5 -BS_DPF1CX0G KIAA1549--BRAF 4.98789137646865 2.27626401932161 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_ZVV78QP5 -BS_DRD9QXR5 RFX4--RFX4 0.396570148927346 0.396570148927346 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_MQHST8YC -BS_DRD9QXR5 MYT1L--MYT1L -0.383304160999534 -0.383304160999534 NA NA no change no change NA NA frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_MQHST8YC -BS_DRY58DTF CIC--AC011466.3 0.396871679533931 NA NA NA no change NA NA NA frameshift CIC NA AC011466.3 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4PJA6KT -BS_DRY58DTF MEGF8--AL121832.1/GATA5 -0.305304364187075 NA NA -0.450859439670077 no change NA NA no change frameshift MEGF8 NA AL121832.1 GATA5 NA NA NA TumorSuppressorGene, TranscriptionFactor NA ARRIBA 1 PT_Z4PJA6KT -BS_DS438CXE RFX4--RFX4 3.08147123455164 3.08147123455164 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_0DXHDZJR -BS_DSS3S5XD KIAA1549--BRAF 5.91033583648805 1.47963468210677 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_SDK91A16 -BS_DSS3S5XD CSMD3--CSMD3 2.70682672592678 2.70682672592678 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_SDK91A16 -BS_DV86M0Y7 ERC2--ERC2 0.747645094639144 0.747645094639144 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2Z7GVDTM -BS_DV86M0Y7 KIAA1549--BRAF 3.06612187130819 2.52991391394521 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_2Z7GVDTM -BS_DVCQ8XDZ ERC2--ERC2 2.5465653940672 2.5465653940672 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0RN3VSXZ -BS_DVCQ8XDZ KCNH1--AL590132.1 2.95985518736006 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_0RN3VSXZ -BS_DVCQ8XDZ UNC79--UNC79 0.264858612718268 0.264858612718268 NA NA no change no change NA NA frameshift UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0RN3VSXZ -BS_DVCQ8XDZ KCNH1--AL590132.1 2.95985518736006 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_0RN3VSXZ -BS_DVCQ8XDZ AL590132.1--KCNH1 NA 2.95985518736006 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_0RN3VSXZ -BS_DVCQ8XDZ AL590132.1--KCNH1 NA 2.95985518736006 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_0RN3VSXZ -BS_DVCQ8XDZ POU6F2--POU6F2 3.61897735918897 3.61897735918897 NA NA differentially expressed differentially expressed NA NA frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_0RN3VSXZ -BS_DVCQ8XDZ KCNH1--KCNH1 2.95985518736006 2.95985518736006 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0RN3VSXZ -BS_E1CGF3KV QKI--CDC5L 2.71196805791191 4.53394714156923 NA NA differentially expressed differentially expressed NA NA in-frame QKI NA CDC5L NA TumorSuppressorGene, CosmicCensus TranscriptionFactor NA NA NA ARRIBA 1 PT_2PRV78FX -BS_E1CGF3KV MYB--QKI 9.02894310471745 2.71196805791191 NA NA differentially expressed differentially expressed NA NA in-frame MYB NA QKI NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_2PRV78FX -BS_E1CGF3KV CDC5L--MYB 4.53394714156923 9.02894310471745 NA NA differentially expressed differentially expressed NA NA in-frame CDC5L NA MYB NA TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_2PRV78FX -BS_E3BAT4C1 PRKCE--PRAG1 -0.512818883276359 NA NA NA no change NA NA NA frameshift PRKCE NA PRAG1 NA TumorSuppressorGene, Kinase Kinase NA NA NA ARRIBA 1 PT_F3S9PB94 -BS_E4F1D721 RFX4--RFX4 2.52862694750378 2.52862694750378 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_1DY2TP9N -BS_E4GC9EXR ERC2--ERC2 0.125135590649298 0.125135590649298 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_W6AWJJK7 -BS_E4QK839R CSMD3--CSMD3 0.907514677627082 0.907514677627082 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_VZTTTP3Q -BS_E4QK839R ERC2--ERC2 -0.147779886787052 -0.147779886787052 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_VZTTTP3Q -BS_E60JZ9Z3 ST7--AC007036.1/ZNRF2 1.27512981189533 NA NA 4.75743061043688 no change NA NA differentially expressed frameshift ST7 NA AC007036.1 ZNRF2 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_Z4PJA6KT -BS_E94QRJDW RNF130--BRAF -0.323695054296904 1.64334146890491 NA NA no change no change NA NA in-frame RNF130 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_20ZM6THA -BS_E94QRJDW BRAF--RNF130 1.64334146890491 -0.323695054296904 NA NA no change no change NA NA frameshift BRAF NA RNF130 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_20ZM6THA -BS_EBMCTR80 NTRK2--DIAPH2 0.452138412044829 5.17194233513738 NA NA no change differentially expressed NA NA in-frame NTRK2 NA DIAPH2 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_8R00BMHH -BS_EBMCTR80 RCN2--EMP1 1.15922571367102 2.71523699162648 NA NA no change differentially expressed NA NA frameshift RCN2 NA EMP1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_8R00BMHH -BS_EBMCTR80 DIAPH2--NTRK2 5.17194233513738 0.452138412044829 NA NA differentially expressed no change NA NA in-frame DIAPH2 NA NTRK2 NA NA Oncogene, Kinase NA NA NA ARRIBA 1 PT_8R00BMHH -BS_EF775B3K ERC2--ERC2 2.22356537384608 2.22356537384608 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XNTFM9XY -BS_EF775B3K GAB1--SYK 1.9799050973261 3.59323331301505 NA NA no change differentially expressed NA NA in-frame GAB1 NA SYK NA Oncogene Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_XNTFM9XY -BS_EF775B3K RFX4--RFX4 1.56471919559032 1.56471919559032 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_XNTFM9XY -BS_EFE4YEK3 ST18--ST18 3.05591539223612 3.05591539223612 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RH59ET3M -BS_EFEZB0ZH CSMD1--MAP4 2.93587795399164 0.554262964430129 NA NA differentially expressed no change NA NA in-frame CSMD1 NA MAP4 NA TumorSuppressorGene Oncogene NA NA NA ARRIBA 1 PT_DW6V5V8E -BS_EFEZB0ZH KIAA1549--BRAF 4.73676387921309 0.846169537412455 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_DW6V5V8E -BS_EHVYJAVA MCM9--MCM9 2.67163179749525 2.67163179749525 NA NA differentially expressed differentially expressed NA NA in-frame MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_GHHY5AAE -BS_EHVYJAVA RFX4--RFX4 1.2938097880149 1.2938097880149 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_GHHY5AAE -BS_EHVYJAVA FAM135B--FAM135B 0.770819117176645 0.770819117176645 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_GHHY5AAE -BS_EJ9JKM1C DENND1A--TFAP4 0.691264920917666 0.809297028668144 NA NA no change no change NA NA frameshift DENND1A NA TFAP4 NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_HFQNKP5X -BS_EJ9JKM1C VTI1A--CHST15/OAT 2.48763677359662 -0.0529855743700483 NA -0.755166551723886 differentially expressed no change NA no change frameshift VTI1A NA CHST15 OAT CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_HFQNKP5X -BS_EK5PCKY0 IFT88--IFT88 3.56280435673238 3.56280435673238 NA NA differentially expressed differentially expressed NA NA in-frame IFT88 NA IFT88 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_EK5PCKY0 NEK10--NEK10 4.02809629040949 4.02809629040949 NA NA differentially expressed differentially expressed NA NA frameshift NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_EK5PCKY0 RFX4--RFX4 1.99772430049518 1.99772430049518 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_EK5PCKY0 TP53BP1--TP53BP1 2.16103700874744 2.16103700874744 NA NA differentially expressed differentially expressed NA NA in-frame TP53BP1 NA TP53BP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_EK5PCKY0 DNAH9--DNAH9 2.32889939594603 2.32889939594603 NA NA differentially expressed differentially expressed NA NA frameshift DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_EK5PCKY0 C11orf95--RELA 2.83030160813892 3.12538873402916 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_EK5PCKY0 TAOK1--TAOK1 4.40636740002517 4.40636740002517 NA NA differentially expressed differentially expressed NA NA frameshift TAOK1 NA TAOK1 NA Kinase Kinase NA NA NA ARRIBA 1 PT_GFTCNWQ0 -BS_EMMF4PZX TMEM165--FRYL 1.00631034907892 1.83146813684746 NA NA no change no change NA NA frameshift TMEM165 NA FRYL NA NA Oncogene NA NA NA ARRIBA 1 PT_BZKJR4GK -BS_EN2VK7NY KIAA1549--BRAF 2.90949425258426 1.23256289199418 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_Y572BRC1 -BS_ERJAJ0KA FAM135B--FAM135B 0.432433200738042 0.432433200738042 NA NA no change no change NA NA in-frame FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_DXF7ZZQZ -BS_ERJAJ0KA ERC2--ERC2 1.31732947578092 1.31732947578092 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DXF7ZZQZ -BS_ERJAJ0KA MYB--MMP16 8.27018934833848 7.87368056290788 NA NA differentially expressed differentially expressed NA NA frameshift MYB NA MMP16 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DXF7ZZQZ -BS_ERJAJ0KA AL590132.1--KCNH1 NA 1.66800358746845 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DXF7ZZQZ -BS_ERJAJ0KA KCNH1--AL590132.1 1.66800358746845 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DXF7ZZQZ -BS_ERJAJ0KA AL590132.1--KCNH1 NA 1.66800358746845 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DXF7ZZQZ -BS_ERJAJ0KA RFX4--RFX4 1.24794411040682 1.24794411040682 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_DXF7ZZQZ -BS_ERJAJ0KA KCNH1--AL590132.1 1.66800358746845 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DXF7ZZQZ -BS_ERJAJ0KA KCNH1--KCNH1 1.66800358746845 1.66800358746845 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DXF7ZZQZ -BS_ERWT0ZWE NDST4--NDST4 22.3496309495519 22.3496309495519 NA NA differentially expressed differentially expressed NA NA frameshift NDST4 NA NDST4 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_7BJBEBZT -BS_ERWT0ZWE ST18--ST18 2.97804658776938 2.97804658776938 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_7BJBEBZT -BS_ERWT0ZWE CSMD3--CSMD3 0.175380596935486 0.175380596935486 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_7BJBEBZT -BS_ERWT0ZWE ELL--ZFP28 0.500420741660386 2.00180811611681 NA NA no change differentially expressed NA NA in-frame ELL NA ZFP28 NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_7BJBEBZT -BS_ERWT0ZWE ELL--ZFP28 0.500420741660386 2.00180811611681 NA NA no change differentially expressed NA NA frameshift ELL NA ZFP28 NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_7BJBEBZT -BS_ERWT0ZWE NEK10--NEK10 1.35013869115848 1.35013869115848 NA NA no change no change NA NA frameshift NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_7BJBEBZT -BS_ERWT0ZWE USH2A--USH2A/ESRRG 25.0768537724709 25.0768537724709 NA 8.47570136614215 differentially expressed differentially expressed NA differentially expressed frameshift USH2A NA USH2A ESRRG NA NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_7BJBEBZT -BS_ERWT0ZWE JAK2--JAK2 1.35915729426611 1.35915729426611 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_7BJBEBZT -BS_ET8CJXSF KIAA1549--BRAF 4.11065658041514 1.97696683206092 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_VGXHFMND -BS_ET8CJXSF ST18--ST18 0.531474236931646 0.531474236931646 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VGXHFMND -BS_ET8CJXSF RFX4--RFX4 1.40823487605862 1.40823487605862 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VGXHFMND -BS_EZ3147MX FRMD4A--ZMIZ1 1.75221008286286 1.98610074174931 NA NA no change no change NA NA frameshift FRMD4A NA ZMIZ1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KAQMYFYB -BS_EZ3147MX BTRC--ADARB2 -0.164985830636128 -0.156989288153003 NA NA no change no change NA NA frameshift BTRC NA ADARB2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_KAQMYFYB -BS_EZ3147MX REV3L--FYN 1.42816373229834 4.25532101112455 NA NA no change differentially expressed NA NA in-frame REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_KAQMYFYB -BS_EZ3147MX REV3L--FYN 1.42816373229834 4.25532101112455 NA NA no change differentially expressed NA NA frameshift REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_KAQMYFYB -BS_EZ3147MX BTRC--LRRC20 -0.164985830636128 1.29594176012959 NA NA no change no change NA NA frameshift BTRC NA LRRC20 NA Oncogene NA NA NA NA ARRIBA 1 PT_KAQMYFYB -BS_EZ3147MX BTRC--NPFFR1 -0.164985830636128 -0.737577498316832 NA NA no change no change NA NA frameshift BTRC NA NPFFR1 NA Oncogene NA NA NA NA ARRIBA 1 PT_KAQMYFYB -BS_F0JB4EAK ABCC1--WWOX 0.460805858624994 2.37968510381672 NA NA no change differentially expressed NA NA in-frame ABCC1 NA WWOX NA Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_KBFM551M -BS_F0JB4EAK CDC42BPB--CDCA4 -0.225985023373808 1.79349639688475 NA NA no change no change NA NA frameshift CDC42BPB NA CDCA4 NA Kinase NA NA NA NA ARRIBA 1 PT_KBFM551M -BS_F0JB4EAK AKT1--EFS -0.28461310836056 1.62952421073774 NA NA no change no change NA NA frameshift AKT1 NA EFS NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_KBFM551M -BS_F0JB4EAK CRIP2--TRAV41 -0.524861968906446 0.69591399968298 NA NA no change no change NA NA frameshift CRIP2 NA TRAV41 NA Oncogene NA NA NA NA ARRIBA 1 PT_KBFM551M -BS_F0JB4EAK CRIP2--TRAV41/AC244502.2 -0.524861968906446 0.69591399968298 NA NA no change no change NA NA frameshift CRIP2 NA TRAV41 AC244502.2 Oncogene NA NA NA NA ARRIBA 1 PT_KBFM551M -BS_F4E8R9VY FGFR2--SHTN1 0.702908257319563 -1.0401099811826 NA NA no change no change NA NA in-frame FGFR2 NA SHTN1 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus NA NA NA ARRIBA 1 PT_8ECE2D92 -BS_F6V1Y4QS GOPC--ROS1 -2.06647730842001 3.77656253265184 NA NA differentially expressed differentially expressed NA NA in-frame GOPC NA ROS1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_Z7YJ7MSM -BS_F6V1Y4QS SASH1--LINC02067 0.696568421704232 NA NA NA no change NA NA NA frameshift SASH1 NA LINC02067 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_Z7YJ7MSM -BS_F6Z5HFWH RFX4--RFX4 0.26305706762623 0.26305706762623 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_JN3S17B3 -BS_F8N6CFQE CSMD3--CSMD3 4.34379711592182 4.34379711592182 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_EZEMVRVT -BS_F8N6CFQE MYT1L--MYT1L -0.994109682779672 -0.994109682779672 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_EZEMVRVT -BS_F8N6CFQE KIAA1549--BRAF 4.011210110761 1.97008111544165 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_EZEMVRVT -BS_FAQQ0GCQ SRGAP3--TM4SF18 0.0767948885045081 0.634561158692046 NA NA no change no change NA NA frameshift SRGAP3 NA TM4SF18 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ MGLL--ERC2 0.0376555447690341 -1.18887183324169 NA NA no change no change NA NA frameshift MGLL NA ERC2 NA NA Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ ARL6IP5--AC137630.1 -0.0299586178957712 NA NA NA no change NA NA NA frameshift ARL6IP5 NA AC137630.1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ ERC2--ATP1B3 -1.18887183324169 -1.64425506698359 NA NA no change no change NA NA in-frame ERC2 NA ATP1B3 NA Oncogene NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ COMMD2--CBLB 1.43698529944835 0.412894671802207 NA NA no change no change NA NA frameshift COMMD2 NA CBLB NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ LRIG1--FYTTD1 0.364506044116744 2.12781049886511 NA NA no change differentially expressed NA NA in-frame LRIG1 NA FYTTD1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ ZNF148--NFKBIZ/LINC02085 5.2927186994275 3.81669446862688 NA NA differentially expressed differentially expressed NA NA frameshift ZNF148 NA NFKBIZ LINC02085 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ SLMAP--KALRN 0.908120134881195 0.511874071974098 NA NA no change no change NA NA in-frame SLMAP NA KALRN NA NA Kinase NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ HLTF--LINC01983 0.392973513684276 NA NA NA no change NA NA NA frameshift HLTF NA LINC01983 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ SLC4A7--ST6GAL1 5.26926106646103 3.48083817538717 NA NA differentially expressed differentially expressed NA NA frameshift SLC4A7 NA ST6GAL1 NA NA Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ UBA3--ROBO2 -0.442536729460711 -0.45070281922893 NA NA no change no change NA NA frameshift UBA3 NA ROBO2 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ ATXN7--CACNA2D3 2.63304162520009 -1.20886410009921 NA NA differentially expressed no change NA NA frameshift ATXN7 NA CACNA2D3 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ SRGAP3--TM4SF18 0.0767948885045081 0.634561158692046 NA NA no change no change NA NA in-frame SRGAP3 NA TM4SF18 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ CACNA2D3--AC132008.2 -1.20886410009921 NA NA NA no change NA NA NA frameshift CACNA2D3 NA AC132008.2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ CACNA2D3--LINC02008 -1.20886410009921 NA NA NA no change NA NA NA frameshift CACNA2D3 NA LINC02008 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ ARL6IP5--AC137630.4 -0.0299586178957712 NA NA NA no change NA NA NA frameshift ARL6IP5 NA AC137630.4 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ PTPRG--ATP13A4 5.82806445706272 -0.5449368149364 NA NA differentially expressed no change NA NA in-frame PTPRG NA ATP13A4 NA Oncogene NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ PTPRG--OSBPL10 5.82806445706272 4.78255711080107 NA NA differentially expressed differentially expressed NA NA in-frame PTPRG NA OSBPL10 NA Oncogene NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ FGF12--MME -0.157237712897883 -0.401515822860587 NA NA no change no change NA NA frameshift FGF12 NA MME NA Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ CCDC66--ULK4 0.218188716452202 3.11288226888775 NA NA no change differentially expressed NA NA frameshift CCDC66 NA ULK4 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ CACNA2D3--AC129807.1 -1.20886410009921 NA NA NA no change NA NA NA frameshift CACNA2D3 NA AC129807.1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ DIRC2--LRRC3B 1.79898818141284 -1.99450136943218 NA NA no change no change NA NA frameshift DIRC2 NA LRRC3B NA Oncogene TumorSuppressorGene NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ RBMS3--AC068633.1/IGSF11 3.36339966124749 NA NA 0.398668003404166 differentially expressed NA NA no change frameshift RBMS3 NA AC068633.1 IGSF11 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ LRCH3--FANCD2 0.983358521688459 0.834761546674823 NA NA no change no change NA NA frameshift LRCH3 NA FANCD2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ RNF13--CNTN4 0.430785383202723 -0.635113846764398 NA NA no change no change NA NA frameshift RNF13 NA CNTN4 NA NA Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ ACAD11--CSTA -1.72926365262437 3.41641154592532 NA NA no change differentially expressed NA NA frameshift ACAD11 NA CSTA NA NA Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ SETD2--ROBO1 1.41953735031442 0.697466788768392 NA NA no change no change NA NA frameshift SETD2 NA ROBO1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ SUMF1--BFSP2 3.73498620133292 26.8336913033686 NA NA differentially expressed differentially expressed NA NA in-frame SUMF1 NA BFSP2 NA NA Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ PTPRG--OSBPL10 5.82806445706272 4.78255711080107 NA NA differentially expressed differentially expressed NA NA frameshift PTPRG NA OSBPL10 NA Oncogene NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ ABCC5--CADM2 -1.31610860586718 2.10380211421911 NA NA no change differentially expressed NA NA frameshift ABCC5 NA CADM2 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ CACNA2D3--ATXN7 -1.20886410009921 2.63304162520009 NA NA no change differentially expressed NA NA frameshift CACNA2D3 NA ATXN7 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAQQ0GCQ ARL6IP5--ARIH2 -0.0299586178957712 -0.00623184646305169 NA NA no change no change NA NA frameshift ARL6IP5 NA ARIH2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H -BS_FAVRBEW7 RFX4--RFX4 -0.224282284304868 -0.224282284304868 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_WYVMWYVA -BS_FAVRBEW7 NEK5--AC090001.1 6.60142921668522 NA NA NA differentially expressed NA NA NA frameshift NEK5 NA AC090001.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_WYVMWYVA -BS_FAVRBEW7 SLC9A8--ABCB5 0.125832118825987 -0.258532823184195 NA NA no change no change NA NA frameshift SLC9A8 NA ABCB5 NA NA Oncogene NA NA NA ARRIBA 1 PT_WYVMWYVA -BS_FBJ5Q54N BMI1--RNU6-413P/ARMC3 1.54191960491049 NA NA -0.0440606299493207 no change NA NA no change frameshift BMI1 NA RNU6-413P ARMC3 Oncogene NA NA NA NA ARRIBA 1 PT_FMK5VFYW -BS_FCAKKZ20 NTRK3--PHF14 3.67462249729734 4.70105213121907 NA NA differentially expressed differentially expressed NA NA frameshift NTRK3 NA PHF14 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_FCAKKZ20 PHF12--GAS7 3.32128834643133 -1.08325913360013 NA NA differentially expressed no change NA NA frameshift PHF12 NA GAS7 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_FCAKKZ20 GPM6B--SRPX -1.42433973386035 -0.203533440851777 NA NA no change no change NA NA in-frame GPM6B NA SRPX NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_FCAKKZ20 TXLNG--ERAS 1.7984964383662 7.43877890907587 NA NA no change differentially expressed NA NA frameshift TXLNG NA ERAS NA NA Oncogene NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_FCAKKZ20 THADA--AL445687.2/RNU6-716P 1.4006058455854 NA NA NA no change NA NA NA frameshift THADA NA AL445687.2 RNU6-716P Oncogene NA NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_FCAKKZ20 ZNF81--AC091808.1/MIR3937 6.6949250851119 NA NA NA differentially expressed NA NA NA frameshift ZNF81 NA AC091808.1 MIR3937 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_FCAKKZ20 AKAP13--THADA 1.57084471540474 1.4006058455854 NA NA no change no change NA NA frameshift AKAP13 NA THADA NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_FCDAH728 CACNA1E--GAS5 0.406398447216913 2.29690942243032 NA NA no change differentially expressed NA NA frameshift CACNA1E NA GAS5 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_KZ56XHJT -BS_FCDAH728 SDCBP--MKL1 1.06906630342657 -0.0930189677486063 NA NA no change no change NA NA frameshift SDCBP NA MKL1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KZ56XHJT -BS_FEPRNEXX MYT1L--MYT1L 1.31787484062313 1.31787484062313 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_00G007DM -BS_FEPRNEXX MTSS1--MTSS1 2.01105043960387 2.01105043960387 NA NA differentially expressed differentially expressed NA NA frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_00G007DM -BS_FEPRNEXX PLEKHA8--PLEKHA8 2.13365747733173 2.13365747733173 NA NA differentially expressed differentially expressed NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_00G007DM -BS_FEPRNEXX ST18--ST18 2.17175517797261 2.17175517797261 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_00G007DM -BS_FEPRNEXX HIVEP1--HIVEP1 0.803889896161693 0.803889896161693 NA NA no change no change NA NA in-frame HIVEP1 NA HIVEP1 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_00G007DM -BS_FEPRNEXX ERC2--ERC2 0.993530153292197 0.993530153292197 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_00G007DM -BS_FJWZ3M7V KIAA1549--BRAF 4.46000142918069 1.50567596420849 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_X1PRY0FC -BS_FJZPQZ2C UNC79--UNC79 0.134160950055608 0.134160950055608 NA NA no change no change NA NA frameshift UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_FJZPQZ2C ERC2--ERC2 0.639243712898144 0.639243712898144 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_FJZPQZ2C KCNH1--AL590132.1 1.0998317466907 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_FJZPQZ2C ACVR1--ACVR1 1.76088512441085 1.76088512441085 NA NA no change no change NA NA frameshift ACVR1 NA ACVR1 NA CosmicCensus, Kinase CosmicCensus, Kinase NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_FJZPQZ2C AL590132.1--KCNH1 NA 1.0998317466907 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_FJZPQZ2C KCNH1--AL590132.1 1.0998317466907 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_FJZPQZ2C AL590132.1--KCNH1 NA 1.0998317466907 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_FJZPQZ2C KCNH1--KCNH1 1.0998317466907 1.0998317466907 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_FJZPQZ2C FAM135B--FAM135B 0.294355757649903 0.294355757649903 NA NA no change no change NA NA in-frame FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_3T3VGWC6 -BS_FKDQJJB5 STAT3--CCDC57 2.6831715413045 1.19223482745806 NA NA differentially expressed no change NA NA frameshift STAT3 NA CCDC57 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_YFS3AWC0 -BS_FKDQJJB5 ROR1--DNAJC6 12.6630642236138 -1.29466974449389 NA NA differentially expressed no change NA NA in-frame ROR1 NA DNAJC6 NA Kinase, Kinase Oncogene NA NA NA ARRIBA 1 PT_YFS3AWC0 -BS_FKDQJJB5 STAT3--CD36 2.6831715413045 0.623530638012332 NA NA differentially expressed no change NA NA frameshift STAT3 NA CD36 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_YFS3AWC0 -BS_FRM9TG02 NCOR2--SCARB1 3.11855582304504 0.468860501950697 NA NA differentially expressed no change NA NA in-frame NCOR2 NA SCARB1 NA CosmicCensus, Oncogene Oncogene NA NA TCGAFusion ARRIBA 1 PT_3P3D97AB -BS_FTKPQ5FZ C11orf95--RELA 6.18489671018741 4.49080755069457 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_VR8T8JX8 -BS_FW5ECXXK ERC2--ERC2 2.03273808162032 2.03273808162032 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3C6QA9MA -BS_FW5ECXXK SNX15--MACROD1 -1.20397924565669 -2.40742512371681 NA NA no change differentially expressed NA NA frameshift SNX15 NA MACROD1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3C6QA9MA -BS_FW5ECXXK AL590132.1--KCNH1 NA 2.34646935425043 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3C6QA9MA -BS_FW5ECXXK ARL2-SNX15--MACROD1 -0.410167103089346 -2.40742512371681 NA NA no change differentially expressed NA NA frameshift ARL2-SNX15 NA MACROD1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3C6QA9MA -BS_FW5ECXXK AL590132.1--KCNH1 NA 2.34646935425043 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3C6QA9MA -BS_FW5ECXXK C11orf95--RELA 3.46067721739119 3.18961498927351 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_3C6QA9MA -BS_FW5ECXXK KCNH1--AL590132.1 2.34646935425043 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_3C6QA9MA -BS_FW5ECXXK KCNH1--KCNH1 2.34646935425043 2.34646935425043 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3C6QA9MA -BS_FW5ECXXK EED--ADGRB3 -0.99756619236814 0.346110024319294 NA NA no change no change NA NA in-frame EED NA ADGRB3 NA TumorSuppressorGene, CosmicCensus NA NA NA NA ARRIBA 1 PT_3C6QA9MA -BS_FW5ECXXK KCNH1--AL590132.1 2.34646935425043 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_3C6QA9MA -BS_FWMJPKCV ARHGAP35--AP2S1/ARHGAP35 3.0268116733432 -1.05821215552187 NA 3.0268116733432 differentially expressed no change NA differentially expressed frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_7VPSS2SN -BS_FWMJPKCV MYT1L--MYT1L 0.484478916690872 0.484478916690872 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_7VPSS2SN -BS_FWMJPKCV CSMD3--CSMD3 4.87570570489012 4.87570570489012 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_7VPSS2SN -BS_FYRDYBMZ RAD23B--AL157937.1/DMRTA1 1.02394024025455 NA NA 0.99407500186647 no change NA NA no change frameshift RAD23B NA AL157937.1 DMRTA1 TumorSuppressorGene, Oncogene NA NA TranscriptionFactor NA ARRIBA 1 PT_ARCM3PXM -BS_FYRDYBMZ PREX1--SCD5 0.420107351516492 2.79518063328022 NA NA no change differentially expressed NA NA frameshift PREX1 NA SCD5 NA Oncogene NA NA NA NA ARRIBA 1 PT_ARCM3PXM -BS_FYRDYBMZ MTAP--AL445487.1/RAD23B 0.3603976901359 NA NA 1.02394024025455 no change NA NA no change frameshift MTAP NA AL445487.1 RAD23B TumorSuppressorGene NA NA TumorSuppressorGene, Oncogene NA ARRIBA 1 PT_ARCM3PXM -BS_G00FHF3Q JAK2--JAK2 1.33927862340786 1.33927862340786 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_TKWTTRQ7 -BS_G1Y281HX CTDSP1--CFLAR 2.45712612816046 1.48755185155247 NA NA differentially expressed no change NA NA frameshift CTDSP1 NA CFLAR NA NA Oncogene NA NA NA ARRIBA 1 PT_P1290MMP -BS_G1Y281HX ZEB2--ARHGAP15 2.01046493122374 5.66476128624578 NA NA differentially expressed differentially expressed NA NA in-frame ZEB2 NA ARHGAP15 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_P1290MMP -BS_G23JJAZY ST18--ST18 0.686012023031182 0.686012023031182 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_23K3YS1P -BS_G23JJAZY C11orf95--RELA 4.27120134451453 4.13452360301398 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_23K3YS1P -BS_G23JJAZY ABTB2--AP002791.1/AP003028.1 1.87927266881078 NA NA NA no change NA NA NA frameshift ABTB2 NA AP002791.1 AP003028.1 Oncogene NA NA NA NA ARRIBA 1 PT_23K3YS1P -BS_G3RJTBZD ARID1B--LDB2 3.31484073560701 -0.507510244833549 NA NA differentially expressed no change NA NA frameshift ARID1B NA LDB2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_3CHB9PK5 -BS_G63HYD6N ARHGEF10--ARHGEF10 -0.509511957935737 -0.509511957935737 NA NA no change no change NA NA frameshift ARHGEF10 NA ARHGEF10 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_PKP1250P -BS_G63HYD6N ARHGEF10--KBTBD11-OT1 -0.509511957935737 -1.3556306704153 NA NA no change no change NA NA frameshift ARHGEF10 NA KBTBD11-OT1 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_PKP1250P -BS_G63HYD6N KBTBD11-OT1--ARHGEF10 -1.3556306704153 -0.509511957935737 NA NA no change no change NA NA in-frame KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_PKP1250P -BS_G63HYD6N C11orf95--RELA 5.72441050162175 4.95228108716172 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_PKP1250P -BS_G63HYD6N RELA--MACROD1 4.95228108716172 0.350245059669162 NA NA differentially expressed no change NA NA in-frame RELA NA MACROD1 NA Oncogene, TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_PKP1250P -BS_G63HYD6N NUP214--NUP214 1.2449001950456 1.2449001950456 NA NA no change no change NA NA in-frame NUP214 NA NUP214 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PKP1250P -BS_G63HYD6N KBTBD11-OT1--ARHGEF10 -1.3556306704153 -0.509511957935737 NA NA no change no change NA NA frameshift KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_PKP1250P -BS_G63HYD6N CNTRL--CNTRL 0.518228377869074 0.518228377869074 NA NA no change no change NA NA frameshift CNTRL NA CNTRL NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PKP1250P -BS_G63HYD6N ARHGEF10--KBTBD11-OT1 -0.509511957935737 -1.3556306704153 NA NA no change no change NA NA in-frame ARHGEF10 NA KBTBD11-OT1 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_PKP1250P -BS_G7AGNB5G MCM9--MCM9 3.38264558394982 3.38264558394982 NA NA differentially expressed differentially expressed NA NA in-frame MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_EYHJQQ8E -BS_G9XE3N9T RFX4--RFX4 1.97788824635969 1.97788824635969 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_2VSDT9CK -BS_G9XE3N9T CSMD3--CSMD3 1.74943412184877 1.74943412184877 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2VSDT9CK -BS_G9XE3N9T ERC2--ERC2 0.333067302893621 0.333067302893621 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2VSDT9CK -BS_GCA4GET3 KIAA1549--BRAF 4.26311757300539 3.07695507075687 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_6TKJRSPW -BS_GDHH6T5A CSMD3--CSMD3 0.158674532376996 0.158674532376996 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_K8ZV7APT -BS_GE2RVZE6 JAK2--JAK2 1.2272588074024 1.2272588074024 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_TKWTTRQ7 -BS_GE2RVZE6 UNC5C--GRIA2 1.82403983992763 -0.388313348015945 NA NA no change no change NA NA in-frame UNC5C NA GRIA2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_TKWTTRQ7 -BS_GE2RVZE6 BRIP1--BRIP1 2.86609256664677 2.86609256664677 NA NA differentially expressed differentially expressed NA NA in-frame BRIP1 NA BRIP1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_TKWTTRQ7 -BS_GG9W3J9Y NTRK3--NTRK3 2.12973082491998 2.12973082491998 NA NA differentially expressed differentially expressed NA NA frameshift NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_J5NSRW1Y -BS_GHNJ4CYC KIAA1549--BRAF 4.6484190399533 1.86999735237559 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_1J2DT6MM -BS_GMDQK06Q RFX4--RFX4 2.01619756000224 2.01619756000224 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_FAQWD7GX -BS_GMDQK06Q CSMD3--CSMD3 1.61759760906473 1.61759760906473 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_FAQWD7GX -BS_GW0GKWMS ARAP2--PCDH7 1.33817624198497 3.29603334112774 NA NA no change differentially expressed NA NA frameshift ARAP2 NA PCDH7 NA Oncogene NA NA NA NA ARRIBA 1 PT_P2NGYMG5 -BS_GW0GKWMS PTPRZ1--ARAP2 3.65038068757468 1.33817624198497 NA NA differentially expressed no change NA NA frameshift PTPRZ1 NA ARAP2 NA NA Oncogene NA NA NA ARRIBA 1 PT_P2NGYMG5 -BS_GW0GKWMS HPSE--CCDC91/AC022081.1 2.52613534081755 0.806901575703259 NA NA differentially expressed no change NA NA frameshift HPSE NA CCDC91 AC022081.1 Oncogene NA NA NA NA ARRIBA 1 PT_P2NGYMG5 -BS_GWCRMKE6 CSMD3--CSMD3 1.6219733754571 1.6219733754571 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_D5KHK0SS -BS_GWSJ4Z9H KDR--LINC02283 7.61987514510085 NA NA NA differentially expressed NA NA NA frameshift KDR NA LINC02283 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H RAB11FIP3--ATF7IP 0.129953091902114 2.7748355287098 NA NA no change differentially expressed NA NA frameshift RAB11FIP3 NA ATF7IP NA NA Oncogene NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H KLF6--LINC01994 4.29512986233626 NA NA NA differentially expressed NA NA NA frameshift KLF6 NA LINC01994 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H STX1A--CALCR -1.08378489302576 0.377640875259569 NA NA no change no change NA NA frameshift STX1A NA CALCR NA NA Oncogene NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H KDR--LNX1 7.61987514510085 1.06496072900083 NA NA differentially expressed no change NA NA frameshift KDR NA LNX1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H C3orf70--RAB7A 4.22733082282357 1.21085286674467 NA NA differentially expressed no change NA NA frameshift C3orf70 NA RAB7A NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H ST7--FOXL2NB/PRR23A 0.718754589219064 1.1085173217319 NA -0.13179218818729 no change no change NA no change frameshift ST7 NA FOXL2NB PRR23A TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H TMEM33--KIT 2.7844381538141 2.04860543624382 NA NA differentially expressed differentially expressed NA NA frameshift TMEM33 NA KIT NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H KDR--AC124017.1 7.61987514510085 NA NA NA differentially expressed NA NA NA frameshift KDR NA AC124017.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H KDR--AC092546.1 7.61987514510085 NA NA NA differentially expressed NA NA NA frameshift KDR NA AC092546.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H UBE2L3--MET 4.21385492837669 9.19437478015907 NA NA differentially expressed differentially expressed NA NA in-frame UBE2L3 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H KDR--AC098587.1 7.61987514510085 NA NA NA differentially expressed NA NA NA frameshift KDR NA AC098587.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H BOP1--ILF2 0.689244803697917 3.49787458854502 NA NA no change differentially expressed NA NA frameshift BOP1 NA ILF2 NA Oncogene NA NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H ST8SIA2--PIK3C2G 6.16390903556821 0.671982104819354 NA NA differentially expressed no change NA NA frameshift ST8SIA2 NA PIK3C2G NA NA Kinase NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H STAG1--APOD/MUC20P1 2.21881422208357 0.924499929217149 NA NA differentially expressed no change NA NA frameshift STAG1 NA APOD MUC20P1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H KIT--KDR 2.04860543624382 7.61987514510085 NA NA differentially expressed differentially expressed NA NA in-frame KIT NA KDR NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H MET--UBE2L3 9.19437478015907 4.21385492837669 NA NA differentially expressed differentially expressed NA NA in-frame MET NA UBE2L3 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H CHIC2--AC098868.1 5.84285882785366 NA NA NA differentially expressed NA NA NA frameshift CHIC2 NA AC098868.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GWSJ4Z9H KDR--NMU 7.61987514510085 5.95836571269081 NA NA differentially expressed differentially expressed NA NA frameshift KDR NA NMU NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9GKVQ9QS -BS_GXTFW99H ACO2--MKL1 -1.74488530548868 1.94372495531633 NA NA no change no change NA NA frameshift ACO2 NA MKL1 NA NA Oncogene NA NA NA ARRIBA 1 PT_HNZNZ635 -BS_GXTFW99H MKL1--ACO2 1.94372495531633 -1.74488530548868 NA NA no change no change NA NA frameshift MKL1 NA ACO2 NA Oncogene NA NA NA NA ARRIBA 1 PT_HNZNZ635 -BS_GYA4V1RD ERC2--ERC2 0.0343871465356449 0.0343871465356449 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XWVQW6JX -BS_GYA4V1RD ROBO2--ROBO2 0.153381827272339 0.153381827272339 NA NA no change no change NA NA frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_XWVQW6JX -BS_GYA4V1RD BRAF--HIPK2 1.84573007831092 1.9433104184316 NA NA no change no change NA NA frameshift BRAF NA HIPK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA ARRIBA 1 PT_XWVQW6JX -BS_GYA4V1RD SND1--PTN 1.11093785235806 1.15688245419917 NA NA no change no change NA NA frameshift SND1 NA PTN NA CosmicCensus Oncogene NA NA NA ARRIBA 1 PT_XWVQW6JX -BS_GYA4V1RD CSMD3--CSMD3 2.84796100159301 2.84796100159301 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XWVQW6JX -BS_GYA4V1RD CHCHD3--AC073311.1 0.552347740588053 NA NA NA no change NA NA NA frameshift CHCHD3 NA AC073311.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_XWVQW6JX -BS_GYA4V1RD ARHGAP35--AP2S1/ARHGAP35 1.8162611470286 -0.847567954126686 NA 1.8162611470286 no change no change NA no change frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_XWVQW6JX -BS_GYA4V1RD KIAA1549--BRAF 3.93967848608631 1.84573007831092 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_XWVQW6JX -BS_GYXSDZ56 KIAA1549--BRAF 3.42409136038555 1.39646309265099 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_5P3XJ97K -BS_GYXSDZ56 CDH20--CDH20 2.37690786458075 2.37690786458075 NA NA differentially expressed differentially expressed NA NA frameshift CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_5P3XJ97K -BS_GYXSDZ56 KCNH1--KCNH1 1.14938082793054 1.14938082793054 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_5P3XJ97K -BS_GYXSDZ56 CSMD3--CSMD3 2.70952253348753 2.70952253348753 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_5P3XJ97K -BS_H0QWRJE2 DAW1--ZNF609 3.72986367775454 1.94623115953513 NA NA differentially expressed no change NA NA frameshift DAW1 NA ZNF609 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_H0QWRJE2 RFX4--RFX4 3.57815999212234 3.57815999212234 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_H1ZS5FMZ CTIF--AC068112.1/LINC01912 -1.60638615579452 NA NA NA no change NA NA NA frameshift CTIF NA AC068112.1 LINC01912 Oncogene NA NA NA NA ARRIBA 1 PT_MXK5R7RJ -BS_H1ZS5FMZ AGAP2--AC080011.1/AC087883.1 1.93023831171293 NA NA NA no change NA NA NA frameshift AGAP2 NA AC080011.1 AC087883.1 Oncogene NA NA NA NA ARRIBA 1 PT_MXK5R7RJ -BS_H1ZS5FMZ IGF2R--AC097512.1 6.05552776154401 NA NA NA differentially expressed NA NA NA frameshift IGF2R NA AC097512.1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_MXK5R7RJ -BS_H1ZS5FMZ IGF2R--AC097512.1/AC114912.1 6.05552776154401 NA NA NA differentially expressed NA NA NA frameshift IGF2R NA AC097512.1 AC114912.1 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_MXK5R7RJ -BS_H1ZS5FMZ WWOX--CDYL2 0.368299723060233 0.36739824845356 NA NA no change no change NA NA in-frame WWOX NA CDYL2 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_MXK5R7RJ -BS_H1ZS5FMZ EPS15--DMD -0.681093003240555 4.1632531752252 NA NA no change differentially expressed NA NA in-frame EPS15 NA DMD NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA ARRIBA 1 PT_MXK5R7RJ -BS_H1ZS5FMZ PSIP1--FREM1 2.06032527307444 2.14207317479441 NA NA differentially expressed differentially expressed NA NA frameshift PSIP1 NA FREM1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_MXK5R7RJ -BS_H3FE3TH9 KIAA1549--BRAF 4.90747296253817 2.02117577786561 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_1BV6ND1D -BS_H4B5Y6S0 KCNA1--PIK3C2G 0.764878382646851 3.42863886271241 NA NA no change differentially expressed NA NA frameshift KCNA1 NA PIK3C2G NA NA Kinase NA NA NA ARRIBA 1 PT_QYEF3JAT -BS_H4B5Y6S0 DDX1--MYT1L/AC018685.2 0.0861249115014623 1.89002085221661 NA 1.81083354178763 no change no change NA no change frameshift DDX1 NA MYT1L AC018685.2 Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_QYEF3JAT -BS_H4B5Y6S0 LRRFIP1--MYT1L -0.382197954661408 1.89002085221661 NA NA no change no change NA NA frameshift LRRFIP1 NA MYT1L NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_QYEF3JAT -BS_H4B5Y6S0 JAK2--JAK2 3.69335182696567 3.69335182696567 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_QYEF3JAT -BS_H4NXBD2D TFRC--LINC00969 2.53681303552133 0.225556345978515 NA NA differentially expressed no change NA NA frameshift TFRC NA LINC00969 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_0CVRX4SJ -BS_H4NXBD2D C11orf95--RELA 4.35359837542632 4.28943147545753 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_0CVRX4SJ -BS_H8A9PSYA KIAA1549--BRAF 4.73676387921309 2.30091453046798 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_XSS1ANXD -BS_H8A9PSYA ST18--ST18 -0.161033904721446 -0.161033904721446 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_XSS1ANXD -BS_H8A9PSYA REV3L--FYN 1.66834709856344 3.82628071687816 NA NA no change differentially expressed NA NA in-frame REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_XSS1ANXD -BS_H97S5SQN STX8--DUX4L2/DUX4 5.14576582724774 NA NA -0.595069764557869 differentially expressed NA NA no change frameshift STX8 NA DUX4L2 DUX4 NA NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_DMAF1J4A -BS_H97S5SQN REV3L--FYN 1.11093654491433 3.06934040837545 NA NA no change differentially expressed NA NA in-frame REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_DMAF1J4A -BS_H97S5SQN LARP4B--TCERG1L/LINC01164 0.658241734535496 -0.465703309561521 NA -0.518594851234628 no change no change NA no change frameshift LARP4B NA TCERG1L LINC01164 CosmicCensus NA NA NA NA ARRIBA 1 PT_DMAF1J4A -BS_H97S5SQN ZEB2--ZEB2 1.22006588396808 1.22006588396808 NA NA no change no change NA NA frameshift ZEB2 NA ZEB2 NA Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_DMAF1J4A -BS_H97S5SQN CSMD1--BX547991.1 0.264149379464527 NA NA NA no change NA NA NA frameshift CSMD1 NA BX547991.1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_DMAF1J4A -BS_H97S5SQN PTEN--AL133232.1/RNU6-929P 0.445370485389077 NA NA NA no change NA NA NA frameshift PTEN NA AL133232.1 RNU6-929P TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_DMAF1J4A -BS_H97S5SQN CACNA2D1--ELMO1/NECAP1P1 0.741712617111906 0.31478987270267 NA 1.96341291524239 no change no change NA no change frameshift CACNA2D1 NA ELMO1 NECAP1P1 NA Oncogene NA NA NA ARRIBA 1 PT_DMAF1J4A -BS_H97S5SQN MAGI2--FEZF1 1.83442781805369 -0.591235290064746 NA NA no change no change NA NA frameshift MAGI2 NA FEZF1 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_DMAF1J4A -BS_H97S5SQN MAD1L1--STEAP2-AS1 0.407534323901044 -0.87123876917458 NA NA no change no change NA NA frameshift MAD1L1 NA STEAP2-AS1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_DMAF1J4A -BS_HA20Y4XY NF1--AC007923.1/AC004253.2 2.58364645951573 NA NA NA differentially expressed NA NA NA frameshift NF1 NA AC007923.1 AC004253.2 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_4ZSR5DY8 -BS_HBJZR69P CLU--CD74 -0.473444506054868 3.50923536810087 NA NA no change differentially expressed NA NA frameshift CLU NA CD74 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_8WNA6M94 -BS_HC44ZA0V QKI--AL355297.4 1.44951069778525 NA NA NA no change NA NA NA frameshift QKI NA AL355297.4 NA TumorSuppressorGene, CosmicCensus NA NA NA NA ARRIBA 1 PT_8RB7TPS2 -BS_HC44ZA0V QKI--ARID1B 1.44951069778525 3.16947653293838 NA NA no change differentially expressed NA NA in-frame QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_8RB7TPS2 -BS_HC44ZA0V ARID1B--PLAGL1 3.16947653293838 1.75337328976212 NA NA differentially expressed no change NA NA in-frame ARID1B NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_8RB7TPS2 -BS_HC44ZA0V UNC79--UNC79 0.369413858944292 0.369413858944292 NA NA no change no change NA NA frameshift UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_8RB7TPS2 -BS_HC44ZA0V ARID1B--QKI 3.16947653293838 1.44951069778525 NA NA differentially expressed no change NA NA frameshift ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_8RB7TPS2 -BS_HC44ZA0V ARID1B--QKI 3.16947653293838 1.44951069778525 NA NA differentially expressed no change NA NA in-frame ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_8RB7TPS2 -BS_HCP5C912 FAM135B--FAM135B 0.913637284899852 0.913637284899852 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_WG5PHHSQ -BS_HCP5C912 CSMD1--CSMD1 2.03249254160222 2.03249254160222 NA NA differentially expressed differentially expressed NA NA in-frame CSMD1 NA CSMD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_WG5PHHSQ -BS_HCP5C912 KCNH1--AL590132.1 2.36645309200404 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_WG5PHHSQ -BS_HCP5C912 AL590132.1--KCNH1 NA 2.36645309200404 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_WG5PHHSQ -BS_HCP5C912 KCNH1--AL590132.1 2.36645309200404 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_WG5PHHSQ -BS_HCP5C912 AL590132.1--KCNH1 NA 2.36645309200404 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_WG5PHHSQ -BS_HCP5C912 KCNH1--KCNH1 2.36645309200404 2.36645309200404 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WG5PHHSQ -BS_HCP5C912 CIT--CIT 0.636760518914325 0.636760518914325 NA NA no change no change NA NA in-frame CIT NA CIT NA Kinase Kinase NA NA NA ARRIBA 1 PT_WG5PHHSQ -BS_HCP5C912 DCLK2--DCLK2 1.13625401292197 1.13625401292197 NA NA no change no change NA NA frameshift DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_WG5PHHSQ -BS_HCP5C912 CSMD3--CSMD3 2.24089274460001 2.24089274460001 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_WG5PHHSQ -BS_HCP5C912 MYT1L--MYT1L 1.0163164093915 1.0163164093915 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_WG5PHHSQ -BS_HCP5C912 CNTN4--CNTN4 1.31833622237883 1.31833622237883 NA NA no change no change NA NA in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WG5PHHSQ -BS_HCP5C912 FPGT-TNNI3K--FPGT-TNNI3K 1.67513469680017 1.67513469680017 NA NA no change no change NA NA frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_WG5PHHSQ -BS_HCP5C912 ERC2--ERC2 3.26761893288053 3.26761893288053 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WG5PHHSQ -BS_HD4EJYE3 JAK2--JAK2 1.99992723267244 1.99992723267244 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_EZS4SRH6 -BS_HD4EJYE3 BPTF--SPTAN1 3.00838076607321 0.250644640864367 NA NA differentially expressed no change NA NA frameshift BPTF NA SPTAN1 NA TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_EZS4SRH6 -BS_HF3RNN2T ST18--ST18 3.64311054924169 3.64311054924169 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_DFXQFYPV -BS_HF3RNN2T JAK2--JAK2 2.37863632941891 2.37863632941891 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_DFXQFYPV -BS_HHPA8NJ2 CTDSP1--CFLAR -0.717487697607462 0.513243984344517 NA NA no change no change NA NA frameshift CTDSP1 NA CFLAR NA NA Oncogene NA NA NA ARRIBA 1 PT_QW5VW2PY -BS_HHPA8NJ2 ST18--ST18 1.81901003743557 1.81901003743557 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_QW5VW2PY -BS_HKZENFDA JAK2--JAK2 3.25379140507938 3.25379140507938 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_DESHZ91V -BS_HQ5BJ6MW KIAA1549--BRAF 4.011210110761 1.84328767607918 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_E1TRJP8V -BS_HSHN8PBB KIAA1549--BRAF 5.56624555663444 0.927517397239808 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_E78NHRWQ -BS_HTEPAKCM JAK2--JAK2 2.45899199059467 2.45899199059467 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_G3AVDN4E -BS_HV8PFRBR RFX4--RFX4 2.07730468106479 2.07730468106479 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_DEYCW197 -BS_HWGWYCY7 ATP1B1--DNMT3A -0.403443550519799 1.41401228026198 NA NA no change no change NA NA in-frame ATP1B1 NA DNMT3A NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JT9HH7M6 -BS_HWGWYCY7 ZNRF3--C8orf33 0.332512514013035 1.27805577860816 NA NA no change no change NA NA frameshift ZNRF3 NA C8orf33 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_JT9HH7M6 -BS_HWGWYCY7 ZNRF3--LINC01821 0.332512514013035 NA NA NA no change NA NA NA frameshift ZNRF3 NA LINC01821 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_JT9HH7M6 -BS_HWGWYCY7 ATF7IP--PAG1 2.92246165947078 0.89876502781246 NA NA differentially expressed no change NA NA frameshift ATF7IP NA PAG1 NA Oncogene NA NA NA NA ARRIBA 1 PT_JT9HH7M6 -BS_HWGWYCY7 ZNF704--AC138646.1/AC100870.1 -0.649527763405248 NA NA NA no change NA NA NA frameshift ZNF704 NA AC138646.1 AC100870.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JT9HH7M6 -BS_HWGWYCY7 LPGAT1--ZNF704 2.87585720912214 -0.649527763405248 NA NA differentially expressed no change NA NA in-frame LPGAT1 NA ZNF704 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_JT9HH7M6 -BS_HWGWYCY7 ABR--PITPNA 0.704514667716855 1.20013431226103 NA NA no change no change NA NA frameshift ABR NA PITPNA NA Oncogene NA NA NA TCGAFusion ARRIBA 1 PT_JT9HH7M6 -BS_HWGWYCY7 ATP6V1B2--KAT6A/AC103724.1 1.41538784632188 1.94559654364499 NA NA no change no change NA NA frameshift ATP6V1B2 NA KAT6A AC103724.1 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JT9HH7M6 -BS_HWGWYCY7 ZFHX4--NDUFA9 2.16207628954831 4.07791125986629 NA NA differentially expressed differentially expressed NA NA in-frame ZFHX4 NA NDUFA9 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JT9HH7M6 -BS_HWGWYCY7 BCL2L2--AP001412.1/AP001437.1 -2.91055988769935 -0.107862011727848 NA 2.74111799431565 differentially expressed no change NA differentially expressed frameshift BCL2L2 NA AP001412.1 AP001437.1 Oncogene NA NA NA NA ARRIBA 1 PT_JT9HH7M6 -BS_HWGWYCY7 ZFHX4--AC005832.4 2.16207628954831 NA NA NA differentially expressed NA NA NA frameshift ZFHX4 NA AC005832.4 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JT9HH7M6 -BS_HWGWYCY7 NPAS3--AC245884.4/TTYH1 0.351590597834913 NA NA -4.74833522531375 no change NA NA differentially expressed frameshift NPAS3 NA AC245884.4 TTYH1 TranscriptionFactor NA NA Oncogene NA ARRIBA 1 PT_JT9HH7M6 -BS_HX0S30NE LMTK2--SLC25A13 -0.00408993829710469 0.949756074933333 NA NA no change no change NA NA frameshift LMTK2 NA SLC25A13 NA Kinase NA NA NA NA ARRIBA 1 PT_H45M7M2T -BS_HX0S30NE JAZF1--DPY19L2P3 0.822145985341483 1.18863203811276 NA NA no change no change NA NA frameshift JAZF1 NA DPY19L2P3 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_H45M7M2T -BS_HX0S30NE SND1--LHFPL3 2.16067651494264 2.54326872063027 NA NA differentially expressed differentially expressed NA NA frameshift SND1 NA LHFPL3 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_H45M7M2T -BS_HX0S30NE BRAF--TRIM24 2.35413687712063 7.67335489597872 NA NA differentially expressed differentially expressed NA NA frameshift BRAF NA TRIM24 NA Kinase, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_H45M7M2T -BS_HX0S30NE TAX1BP1--BRAF 0.613524029262006 2.35413687712063 NA NA no change differentially expressed NA NA in-frame TAX1BP1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_H45M7M2T -BS_HX0S30NE CAPZA2--BRAF 2.48669469141898 2.35413687712063 NA NA differentially expressed differentially expressed NA NA frameshift CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_H45M7M2T -BS_HX0S30NE CAPZA2--BRAF 2.48669469141898 2.35413687712063 NA NA differentially expressed differentially expressed NA NA in-frame CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_H45M7M2T -BS_HX0S30NE TRIM24--BRAF 7.67335489597872 2.35413687712063 NA NA differentially expressed differentially expressed NA NA in-frame TRIM24 NA BRAF NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_H45M7M2T -BS_HX0S30NE TRIM24--BRAF/AC006006.1 7.67335489597872 2.35413687712063 NA NA differentially expressed differentially expressed NA NA frameshift TRIM24 NA BRAF AC006006.1 TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_H45M7M2T -BS_HX0S30NE TSPAN13--SP4 -1.02070301121232 1.27803640853296 NA NA no change no change NA NA frameshift TSPAN13 NA SP4 NA TumorSuppressorGene TranscriptionFactor NA NA NA ARRIBA 1 PT_H45M7M2T -BS_HZ707C55 LMNTD1--LMNTD1 5.72977509897454 5.72977509897454 NA NA differentially expressed differentially expressed NA NA frameshift LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_ZZRBX5JT -BS_HZ707C55 ULK4--GRID2 6.92881077470304 1.48971247384477 NA NA differentially expressed no change NA NA frameshift ULK4 NA GRID2 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_ZZRBX5JT -BS_HZ707C55 RFX4--RFX4 2.73544433584819 2.73544433584819 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ZZRBX5JT -BS_HZ707C55 GRID2--ULK4 1.48971247384477 6.92881077470304 NA NA no change differentially expressed NA NA frameshift GRID2 NA ULK4 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_ZZRBX5JT -BS_HZ707C55 FANK1--CAMK1D 2.42241517290701 0.737748878914648 NA NA differentially expressed no change NA NA frameshift FANK1 NA CAMK1D NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_ZZRBX5JT -BS_HZ707C55 GRID2--ULK4 1.48971247384477 6.92881077470304 NA NA no change differentially expressed NA NA in-frame GRID2 NA ULK4 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_ZZRBX5JT -BS_HZE3KYZ1 ARHGAP39--NRBP2 -0.47097015069844 -1.24848869448651 NA NA no change no change NA NA frameshift ARHGAP39 NA NRBP2 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_E4ECAFEN -BS_HZRM07TW WWP1--CCDC25 -0.47655663998608 -3.1493662678719 NA NA no change differentially expressed NA NA in-frame WWP1 NA CCDC25 NA Oncogene NA NA NA NA ARRIBA 1 PT_EDWA0XTP -BS_HZRM07TW TNFRSF10B--AC022360.2/RNU4-37P 1.84026523912879 NA NA NA no change NA NA NA frameshift TNFRSF10B NA AC022360.2 RNU4-37P TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EDWA0XTP -BS_HZRM07TW CSPP1--NSMCE2/TRIB1 -1.38272345958931 -0.624252881377302 NA 1.89081316551046 no change no change NA no change frameshift CSPP1 NA NSMCE2 TRIB1 NA NA NA Kinase NA ARRIBA 1 PT_EDWA0XTP -BS_HZRM07TW PTK2--AC022893.2/TERF1 0.446430785726616 NA NA 0.751008466275184 no change NA NA no change frameshift PTK2 NA AC022893.2 TERF1 Kinase NA NA TranscriptionFactor NA ARRIBA 1 PT_EDWA0XTP -BS_HZRM07TW MSRA--WWP1 -0.619883234202468 -0.47655663998608 NA NA no change no change NA NA frameshift MSRA NA WWP1 NA NA Oncogene NA NA NA ARRIBA 1 PT_EDWA0XTP -BS_HZRM07TW HOOK3--CHRAC1 0.605009745091199 1.54142190456139 NA NA no change no change NA NA in-frame HOOK3 NA CHRAC1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_EDWA0XTP -BS_HZRM07TW AGO2--NRBP2 4.94917806260729 -2.52575072534744 NA NA differentially expressed differentially expressed NA NA in-frame AGO2 NA NRBP2 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_EDWA0XTP -BS_HZRM07TW BMP1--CSMD1 -0.144534169399235 -1.6709180048611 NA NA no change no change NA NA frameshift BMP1 NA CSMD1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_EDWA0XTP -BS_HZRM07TW DLC1--NUDCD1 4.19099465814845 2.20033562030468 NA NA differentially expressed differentially expressed NA NA frameshift DLC1 NA NUDCD1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_EDWA0XTP -BS_HZRM07TW MSRA--WWP1 -0.619883234202468 -0.47655663998608 NA NA no change no change NA NA in-frame MSRA NA WWP1 NA NA Oncogene NA NA NA ARRIBA 1 PT_EDWA0XTP -BS_J483EMFP MYT1L--MYT1L 0.56898347680459 0.56898347680459 NA NA no change no change NA NA frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ESHACWF6 -BS_J60G8DMK PLCE1--PIPSL/PLCE1 6.70175253671849 4.58299785797524 NA 6.70175253671849 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_G16WS1MW -BS_J70GK8SM ZBTB44--TTC28 3.0169221921101 7.04995320326815 NA NA differentially expressed differentially expressed NA NA frameshift ZBTB44 NA TTC28 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_QWR0EECG -BS_J70GK8SM C11orf95--MAML2 2.10553480568594 7.17318274116564 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA MAML2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_QWR0EECG -BS_J70GK8SM ZBTB44--TTC28 3.0169221921101 7.04995320326815 NA NA differentially expressed differentially expressed NA NA in-frame ZBTB44 NA TTC28 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_QWR0EECG -BS_J71N7D09 MTSS1--MTSS1 2.97196056370411 2.97196056370411 NA NA differentially expressed differentially expressed NA NA frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_TVK2KY36 -BS_J71N7D09 NFIB--NFIB 7.94039610109147 7.94039610109147 NA NA differentially expressed differentially expressed NA NA frameshift NFIB NA NFIB NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_TVK2KY36 -BS_J8G4SH4Z JAK2--JAK2 2.52095818308961 2.52095818308961 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_P4ZEFY19 -BS_J8G4SH4Z ST18--ST18 3.62186120089765 3.62186120089765 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_P4ZEFY19 -BS_JAEM78XS BTRC--RPS27P18/TEX36-AS1 0.0589249791201992 -0.0294627825494395 NA NA no change no change NA NA frameshift BTRC NA RPS27P18 TEX36-AS1 Oncogene NA NA NA NA ARRIBA 1 PT_82MX6J77 -BS_JAEM78XS NOTCH3--SLC47A1 6.57890887339714 10.2184948872745 NA NA differentially expressed differentially expressed NA NA frameshift NOTCH3 NA SLC47A1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_82MX6J77 -BS_JAEM78XS UNC5C--NPNT 8.03180416082163 4.5993381972818 NA NA differentially expressed differentially expressed NA NA frameshift UNC5C NA NPNT NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_82MX6J77 -BS_JAEM78XS BTRC--TEX36 0.0589249791201992 51.7284664439215 NA NA no change differentially expressed NA NA in-frame BTRC NA TEX36 NA Oncogene NA NA NA NA ARRIBA 1 PT_82MX6J77 -BS_JB43XBCQ MPP5--NPAS3 0.586882339747847 1.37588095974279 NA NA no change no change NA NA frameshift MPP5 NA NPAS3 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_1E3E6GMF -BS_JB43XBCQ BCL11B--LINC01550/AL163932.1 -0.0513766655742274 2.83027856900406 NA NA no change differentially expressed NA NA frameshift BCL11B NA LINC01550 AL163932.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1E3E6GMF -BS_JB43XBCQ CHCHD3--SNORA51/AC008155.2 1.04008837861096 -0.263448158573777 NA NA no change no change NA NA frameshift CHCHD3 NA SNORA51 AC008155.2 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1E3E6GMF -BS_JB43XBCQ SPPL2B--HTT -0.892574265708022 0.206137784758658 NA NA no change no change NA NA frameshift SPPL2B NA HTT NA Oncogene NA NA NA NA ARRIBA 1 PT_1E3E6GMF -BS_JFB984RG CNTN6--CNTN6 1.86146538857701 1.86146538857701 NA NA no change no change NA NA in-frame CNTN6 NA CNTN6 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7KBMN6C2 -BS_JFEZA9KE ALDH7A1--SMARCC1 1.49529118853696 8.76930229756403 NA NA no change differentially expressed NA NA in-frame ALDH7A1 NA SMARCC1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_F822DBA0 -BS_JFEZA9KE EWSR1--FLI1 0.115992581344481 3.82403634565776 NA NA no change differentially expressed NA NA in-frame EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_F822DBA0 -BS_JFR750KD AFAP1--NTRK2 6.59770602044061 0.686225995013765 NA NA differentially expressed no change NA NA in-frame AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_S2SQJVGK -BS_JFR750KD PLCE1--PIPSL/PLCE1 4.31787128482829 3.65885729706281 NA 4.31787128482829 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_S2SQJVGK -BS_JGA9BP3A NF2--MAPK8IP2/ARSA -0.0277482287379935 -2.38758966026075 NA -0.722629502188629 no change differentially expressed NA no change frameshift NF2 NA MAPK8IP2 ARSA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_JGA9BP3A EWSR1--PLAGL1 0.274681413204135 2.66869706376358 NA NA no change differentially expressed NA NA in-frame EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA STARFUSION, ARRIBA 2 PT_WE1CHTWK -BS_JGA9BP3A IGF2R--AL133456.1/AL121885.2 2.95638907803939 NA NA NA differentially expressed NA NA NA frameshift IGF2R NA AL133456.1 AL121885.2 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_JGA9BP3A PARVB--MIR1202/SNORD28B -1.48711188883044 NA NA NA no change NA NA NA frameshift PARVB NA MIR1202 SNORD28B Oncogene NA NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_JGA9BP3A CLTCL1--T -0.878187321214514 5.54296010320638 NA NA no change differentially expressed NA NA frameshift CLTCL1 NA T NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_JGA9BP3A HMGCR--SH3YL1 2.73478039754687 0.399813525648162 NA NA differentially expressed no change NA NA in-frame HMGCR NA SH3YL1 NA Oncogene NA NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_JGA9BP3A RPS6KA2--LINC00207 -3.5308484463149 5.95772472124759 NA NA differentially expressed differentially expressed NA NA frameshift RPS6KA2 NA LINC00207 NA TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_JGA9BP3A THOC5--WDR27 1.77437813106906 1.70496469177598 NA NA no change no change NA NA in-frame THOC5 NA WDR27 NA Oncogene NA NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_JGA9BP3A CHEK2--NF2 2.99010609664888 -0.0277482287379935 NA NA differentially expressed no change NA NA frameshift CHEK2 NA NF2 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_JGA9BP3A EWSR1--PLAGL1 0.274681413204135 2.66869706376358 NA NA no change differentially expressed NA NA frameshift EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA STARFUSION, ARRIBA 2 PT_WE1CHTWK -BS_JGA9BP3A LPA--QKI 18.0189696902466 1.30845731316986 NA NA differentially expressed no change NA NA frameshift LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_JGA9BP3A MYO18B--LINC02560 8.38839130755515 NA NA NA differentially expressed NA NA NA frameshift MYO18B NA LINC02560 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_JGA9BP3A ZNF586--SMTN 2.8843980818095 1.40194227388443 NA NA differentially expressed no change NA NA in-frame ZNF586 NA SMTN NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_JGA9BP3A LPA--QKI 18.0189696902466 1.30845731316986 NA NA differentially expressed no change NA NA in-frame LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_JGA9BP3A ARSA--NF2 -0.722629502188629 -0.0277482287379935 NA NA no change no change NA NA frameshift ARSA NA NF2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_WE1CHTWK -BS_JH29M4KG CSMD3--CSMD3 2.54176141329804 2.54176141329804 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_0MHKP408 -BS_JH29M4KG CDH10--CDH10 0.448222059369526 0.448222059369526 NA NA no change no change NA NA frameshift CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_0MHKP408 -BS_JHGW42S6 MYO3A--MYO3A 5.69487240754913 5.69487240754913 NA NA differentially expressed differentially expressed NA NA frameshift MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_EB89G70N -BS_JK0VPG1T CTNND1--KHDRBS1 4.73545375243183 0.836902696097752 NA NA differentially expressed no change NA NA in-frame CTNND1 NA KHDRBS1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_ATS9XDJ5 -BS_JKXA3FQC SSBP1--TPK1 -0.714183306942491 1.67436416504261 NA NA no change no change NA NA frameshift SSBP1 NA TPK1 NA NA Oncogene NA NA NA ARRIBA 1 PT_4JG5KWE8 -BS_JKXA3FQC BRAF--TPK1 1.3098198682233 1.67436416504261 NA NA no change no change NA NA frameshift BRAF NA TPK1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA ARRIBA 1 PT_4JG5KWE8 -BS_JKXA3FQC FAM131B--BRAF -0.972049658673086 1.3098198682233 NA NA no change no change NA NA in-frame FAM131B NA BRAF NA CosmicCensus Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_4JG5KWE8 -BS_JMHG7GCN KIAA1549--BRAF 3.93336829838858 2.30580970287874 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_5CNZ47XV -BS_JQVAWTTM DAPK1--ECM2 0.788983448585186 4.8208373809366 NA NA no change differentially expressed NA NA frameshift DAPK1 NA ECM2 NA Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_M23Q0DC3 -BS_JR5ATB7G PDE4D--AC009163.4 9.86495596610285 NA NA NA differentially expressed NA NA NA frameshift PDE4D NA AC009163.4 NA Oncogene NA NA NA NA ARRIBA 1 PT_8M6W215T -BS_JR5ATB7G TMSB10--GNAS 1.19522463495218 0.144017658661509 NA NA no change no change NA NA in-frame TMSB10 NA GNAS NA Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_8M6W215T -BS_JR5ATB7G PDE4D--TMEM170A 9.86495596610285 1.94670608979934 NA NA differentially expressed no change NA NA frameshift PDE4D NA TMEM170A NA Oncogene NA NA NA NA ARRIBA 1 PT_8M6W215T -BS_JR5ATB7G MACF1--SLC6A18 1.249614825001 113.974930121708 NA NA no change differentially expressed NA NA in-frame MACF1 NA SLC6A18 NA Oncogene NA NA NA NA ARRIBA 1 PT_8M6W215T -BS_JRYJGYC4 CDK11A--NBAS 0.10954152400037 3.1358684255944 NA NA no change differentially expressed NA NA frameshift CDK11A NA NBAS NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_S2BEPYQ0 -BS_JRYJGYC4 TRIM33--SYCP1 3.11251899155054 0.276757368530994 NA NA differentially expressed no change NA NA frameshift TRIM33 NA SYCP1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_S2BEPYQ0 -BS_JRYJGYC4 TRIM33--SIKE1 3.11251899155054 6.93988156399764 NA NA differentially expressed differentially expressed NA NA in-frame TRIM33 NA SIKE1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_S2BEPYQ0 -BS_JRYJGYC4 TRIM33--NR1H5P 3.11251899155054 -0.051075430432349 NA NA differentially expressed no change NA NA frameshift TRIM33 NA NR1H5P NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_S2BEPYQ0 -BS_JRYJGYC4 RFX4--RFX4 1.63315130670126 1.63315130670126 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_S2BEPYQ0 -BS_JS95PE0J ASH1L--C11orf74 2.96984847664842 -0.429610270594167 NA NA differentially expressed no change NA NA frameshift ASH1L NA C11orf74 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KZ04SDDS -BS_JSPR854S CD109--CD109 8.89291265714136 8.89291265714136 NA NA differentially expressed differentially expressed NA NA in-frame CD109 NA CD109 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0H65S44B -BS_JT82QGXF AFF2--SND1 3.87895247917512 1.69059254610637 NA NA differentially expressed no change NA NA in-frame AFF2 NA SND1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_MSBPMJ56 -BS_JT82QGXF SND1--AFF2 1.69059254610637 3.87895247917512 NA NA no change differentially expressed NA NA in-frame SND1 NA AFF2 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_MSBPMJ56 -BS_JT82QGXF JAK2--JAK2 0.134267690754607 0.134267690754607 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_MSBPMJ56 -BS_JTMXAMB7 BRCA1--BRCA1 4.21681225628192 4.21681225628192 NA NA differentially expressed differentially expressed NA NA frameshift BRCA1 NA BRCA1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_5F4N0CAP -BS_JVA2NQFF MYT1L--MYT1L 0.234231566158916 0.234231566158916 NA NA no change no change NA NA frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_4TASAQKA -BS_JVA2NQFF ADAM12--ADAM12 4.9215151310861 4.9215151310861 NA NA differentially expressed differentially expressed NA NA frameshift ADAM12 NA ADAM12 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_4TASAQKA -BS_JVA2NQFF KCNH1--KCNH1 2.61868128775996 2.61868128775996 NA NA differentially expressed differentially expressed NA NA in-frame KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_4TASAQKA -BS_JVA2NQFF KCNH1--AL590132.1 2.61868128775996 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_4TASAQKA -BS_JVA2NQFF KCNH1--AL590132.1 2.61868128775996 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_4TASAQKA -BS_JVA2NQFF MYRFL--MYRFL 1.64731274872458 1.64731274872458 NA NA no change no change NA NA frameshift MYRFL NA MYRFL NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_4TASAQKA -BS_JVA2NQFF AL590132.1--KCNH1 NA 2.61868128775996 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_4TASAQKA -BS_JVA2NQFF AL590132.1--KCNH1 NA 2.61868128775996 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_4TASAQKA -BS_JVA2NQFF KIAA1549--BRAF 5.71112828499369 2.45483578017908 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_4TASAQKA -BS_JVA2NQFF CSMD3--CSMD3 4.22209350295346 4.22209350295346 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_4TASAQKA -BS_JWSR581E KIAA1549--BRAF 3.94597403296416 1.68067655757769 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_6E8JYRXM -BS_JX7S9MY7 RFX4--RFX4 0.720425877778094 0.720425877778094 NA NA no change no change NA NA in-frame RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_B0JFCN5W -BS_JXF8A2A6 EWSR1--FLI1 -0.363088069336966 3.14508610685544 NA NA no change differentially expressed NA NA in-frame EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_EHE800JJ -BS_JXNZYGCR KCNH1--AL590132.1 2.20543927315673 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_3A87PCQK -BS_JXNZYGCR KCNH1--AL590132.1 2.20543927315673 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_3A87PCQK -BS_JXNZYGCR ZNF699--ZNF699/ZNF559 8.33424197449621 8.33424197449621 NA 0.481255028485551 differentially expressed differentially expressed NA no change frameshift ZNF699 NA ZNF699 ZNF559 TranscriptionFactor TranscriptionFactor NA TranscriptionFactor NA ARRIBA 1 PT_3A87PCQK -BS_JXNZYGCR AL590132.1--KCNH1 NA 2.20543927315673 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3A87PCQK -BS_JXNZYGCR CSMD3--CSMD3 3.80829846782287 3.80829846782287 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_3A87PCQK -BS_JXNZYGCR KCNH1--KCNH1 2.20543927315673 2.20543927315673 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3A87PCQK -BS_JXNZYGCR ROBO2--ROBO2 0.253015951344799 0.253015951344799 NA NA no change no change NA NA frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_3A87PCQK -BS_JXNZYGCR ERC2--ERC2 2.19806406049512 2.19806406049512 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3A87PCQK -BS_K17VQECG SAFB2--HOOK2 -0.320080365942364 0.252478366911188 NA NA no change no change NA NA frameshift SAFB2 NA HOOK2 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG SYNE2--RTN1 1.60575960229664 -0.842666029431606 NA NA no change no change NA NA frameshift SYNE2 NA RTN1 NA Oncogene NA NA NA TCGAFusion ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG DAAM1--FUT8 2.62989205386353 1.0576631080895 NA NA differentially expressed no change NA NA frameshift DAAM1 NA FUT8 NA NA Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG SAFB--AC005394.2 0.537104828582588 NA NA NA no change NA NA NA frameshift SAFB NA AC005394.2 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG MAST1--GRXCR1 -0.775925371738836 8.05440506247101 NA NA no change differentially expressed NA NA in-frame MAST1 NA GRXCR1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG SAFB--AC005524.1/MAN1A2P1 0.537104828582588 NA NA 1.98587289758871 no change NA NA no change frameshift SAFB NA AC005524.1 MAN1A2P1 TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG PSMA2--ABCB1 0.387271193132519 1.44406873936898 NA NA no change no change NA NA in-frame PSMA2 NA ABCB1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG XAB2--ELMO1 0.600273601345075 -1.92257045420575 NA NA no change no change NA NA frameshift XAB2 NA ELMO1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG MAP2K2--RTN4R -1.26454403344495 0.0103748039501517 NA NA no change no change NA NA frameshift MAP2K2 NA RTN4R NA Kinase, CosmicCensus, Kinase NA NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG DNMT1--CASP14/OR1I1 2.28935593617197 0.210221232720497 NA 3.6822697743572 differentially expressed no change NA differentially expressed frameshift DNMT1 NA CASP14 OR1I1 TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG RB1--SPATA2P1/RN7SKP6 1.88589182772054 -0.0370460225569195 NA -0.0358677575541047 no change no change NA no change frameshift RB1 NA SPATA2P1 RN7SKP6 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG ETNK1--SLC22A23 3.23191825024273 0.292642030939777 NA NA differentially expressed no change NA NA frameshift ETNK1 NA SLC22A23 NA CosmicCensus, Kinase Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG SMARCA4--WIZ 0.0735396990278778 2.53806342233824 NA NA no change differentially expressed NA NA in-frame SMARCA4 NA WIZ NA TumorSuppressorGene, CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG SAFB2--MAST1 -0.320080365942364 -0.775925371738836 NA NA no change no change NA NA frameshift SAFB2 NA MAST1 NA TumorSuppressorGene, TranscriptionFactor Kinase, Kinase NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG AC010132.3--ABCB1 NA 1.44406873936898 NA NA NA no change NA NA in-frame AC010132.3 NA ABCB1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG FOXP1--CNTN3/NIPA2P2 1.94281375792023 -0.488811222278476 NA -0.0963368371749954 no change no change NA no change frameshift FOXP1 NA CNTN3 NIPA2P2 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG LRIG1--KMT2C 1.10179459990997 2.43693622648328 NA NA no change differentially expressed NA NA frameshift LRIG1 NA KMT2C NA TumorSuppressorGene, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG NIN--AL359232.1 3.68704758774643 NA NA NA differentially expressed NA NA NA frameshift NIN NA AL359232.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG WDR19--KLF3/RNA5SP158 -0.853162144139242 2.5039189782548 NA NA no change differentially expressed NA NA frameshift WDR19 NA KLF3 RNA5SP158 NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG SAFB--AC005524.1 0.537104828582588 NA NA NA no change NA NA NA frameshift SAFB NA AC005524.1 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG KHSRP--SH3GL1 1.04826516423697 1.31806259131186 NA NA no change no change NA NA in-frame KHSRP NA SH3GL1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG SRP54--PRKCH 1.40111523118676 0.661709339875937 NA NA no change no change NA NA frameshift SRP54 NA PRKCH NA NA Kinase NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG LMTK2--AC002454.1 1.02338315357926 -0.282425111435574 NA NA no change no change NA NA frameshift LMTK2 NA AC002454.1 NA Kinase NA NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG NIN--AL133166.1 3.68704758774643 NA NA NA differentially expressed NA NA NA frameshift NIN NA AL133166.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG KHSRP--SH3GL1 1.04826516423697 1.31806259131186 NA NA no change no change NA NA frameshift KHSRP NA SH3GL1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG LMTK2--CDK6 1.02338315357926 8.48023401380702 NA NA no change differentially expressed NA NA frameshift LMTK2 NA CDK6 NA Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K17VQECG SYNE2--CTAGE5 1.60575960229664 -0.428937576020336 NA NA no change no change NA NA frameshift SYNE2 NA CTAGE5 NA Oncogene NA NA NA NA ARRIBA 1 PT_KEQ53KRH -BS_K2FHZGTK MED13L--CUX2 2.6079077215546 -0.684395726294581 NA NA differentially expressed no change NA NA frameshift MED13L NA CUX2 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_AXMVG8QE -BS_K2VYFVKZ CSMD3--CSMD3 3.70345534896448 3.70345534896448 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PFA762TK -BS_K2VYFVKZ KIAA1549--BRAF 4.70842545466112 1.15742652535968 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_PFA762TK -BS_K5802F84 KCNH1--AL590132.1 3.45071797026707 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_NZFFMZ0B -BS_K5802F84 MCF2--MCF2 -0.929251915059878 -0.929251915059878 NA NA no change no change NA NA frameshift MCF2 NA MCF2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NZFFMZ0B -BS_K5802F84 KCNH1--AL590132.1 3.45071797026707 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_NZFFMZ0B -BS_K5802F84 AL590132.1--KCNH1 NA 3.45071797026707 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_NZFFMZ0B -BS_K5802F84 CSMD3--CSMD3 2.50665202191594 2.50665202191594 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_NZFFMZ0B -BS_K5802F84 FAM135B--FAM135B 0.627046516674576 0.627046516674576 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_NZFFMZ0B -BS_K5802F84 AL590132.1--KCNH1 NA 3.45071797026707 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_NZFFMZ0B -BS_K5802F84 ERC2--ERC2 2.56162711678514 2.56162711678514 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NZFFMZ0B -BS_K5802F84 DCLK2--DCLK2 -0.131026901364242 -0.131026901364242 NA NA no change no change NA NA frameshift DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_NZFFMZ0B -BS_K5802F84 KCNH1--KCNH1 3.45071797026707 3.45071797026707 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NZFFMZ0B -BS_K5802F84 RFX4--RFX4 -0.236106981031555 -0.236106981031555 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_NZFFMZ0B -BS_K5802F84 MYT1L--MYT1L 0.912159958446425 0.912159958446425 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_NZFFMZ0B -BS_K5802F84 JAK2--JAK2 0.953997330918629 0.953997330918629 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_NZFFMZ0B -BS_K74PZET7 JAK2--JAK2 2.10344773438264 2.10344773438264 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_ZG4J0EK0 -BS_K7MVS0Z7 KIAA1549--BRAF 4.99003210990286 1.68859032189065 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_ADTP7EHN -BS_K81DR8XG NCOA2--PAX3 3.29500313179703 6.25722030898709 NA NA differentially expressed differentially expressed NA NA in-frame NCOA2 NA PAX3 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GH6HM5QF -BS_K81DR8XG NCOA2--PAX3 3.29500313179703 6.25722030898709 NA NA differentially expressed differentially expressed NA NA frameshift NCOA2 NA PAX3 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GH6HM5QF -BS_K81DR8XG ELF2--LINC02462/AC093722.1 1.45268626995997 NA NA NA no change NA NA NA frameshift ELF2 NA LINC02462 AC093722.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_GH6HM5QF -BS_K81DR8XG PAX3--NCOA2 6.25722030898709 3.29500313179703 NA NA differentially expressed differentially expressed NA NA in-frame PAX3 NA NCOA2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GH6HM5QF -BS_K81DR8XG FGFR4--PLXNB1 7.17882170974798 -0.121708807185699 NA NA differentially expressed no change NA NA frameshift FGFR4 NA PLXNB1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA ARRIBA 1 PT_GH6HM5QF -BS_KBEX4RT2 AAK1--AC007402.1 0.458772777296013 NA NA NA no change NA NA NA frameshift AAK1 NA AC007402.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_84Q11Z5X -BS_KBEX4RT2 AAK1--AC007402.1/AC139712.2 0.458772777296013 NA NA NA no change NA NA NA frameshift AAK1 NA AC007402.1 AC139712.2 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_84Q11Z5X -BS_KBEX4RT2 HMMR--BMP4 7.25211590039153 1.34133781441946 NA NA differentially expressed no change NA NA frameshift HMMR NA BMP4 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_84Q11Z5X -BS_KBEX4RT2 GABRB2--MAP3K1 -1.69862970720351 7.31170660325733 NA NA no change differentially expressed NA NA frameshift GABRB2 NA MAP3K1 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_84Q11Z5X -BS_KBEX4RT2 REV3L--FYN 1.31539963153558 3.42299141831989 NA NA no change differentially expressed NA NA in-frame REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_84Q11Z5X -BS_KBEX4RT2 ANKHD1-EIF4EBP3--SPARC -0.999381346613629 2.1190386644916 NA NA no change differentially expressed NA NA in-frame ANKHD1-EIF4EBP3 NA SPARC NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_84Q11Z5X -BS_KBEX4RT2 ANKH--TRIO 3.5736039183275 4.40931717555727 NA NA differentially expressed differentially expressed NA NA frameshift ANKH NA TRIO NA NA Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_84Q11Z5X -BS_KBEX4RT2 RNF180--AC091976.1 1.40199478678293 NA NA NA no change NA NA NA frameshift RNF180 NA AC091976.1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_84Q11Z5X -BS_KBEX4RT2 ANKHD1--SPARC -0.327561651904508 2.1190386644916 NA NA no change differentially expressed NA NA in-frame ANKHD1 NA SPARC NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_84Q11Z5X -BS_KBEX4RT2 MAT2B--MXD3/LMAN2 0.137951056233346 6.08853103999952 NA 4.73704114806299 no change differentially expressed NA differentially expressed frameshift MAT2B NA MXD3 LMAN2 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_84Q11Z5X -BS_KBEX4RT2 RANBP17--EBF1 1.91196618661283 -0.378806849327628 NA NA no change no change NA NA frameshift RANBP17 NA EBF1 NA Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_84Q11Z5X -BS_KBEX4RT2 ITGB3--SEPT9 11.3246963632173 2.0667732944679 NA NA differentially expressed differentially expressed NA NA in-frame ITGB3 NA SEPT9 NA TumorSuppressorGene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_84Q11Z5X -BS_KBT7MQ6H FRMD8--ME3 1.67483727948324 -1.30498613282838 NA NA no change no change NA NA in-frame FRMD8 NA ME3 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CYBYN18G -BS_KBT7MQ6H DKK3--CSTF3 -0.124555892097447 1.11428773078287 NA NA no change no change NA NA in-frame DKK3 NA CSTF3 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CYBYN18G -BS_KBT7MQ6H C11orf95--RELA 5.5111378320735 5.32523418850425 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_CYBYN18G -BS_KBT7MQ6H FAT3--MIR100HG 2.63650720650311 5.07628465569548 NA NA differentially expressed differentially expressed NA NA frameshift FAT3 NA MIR100HG NA CosmicCensus NA NA NA NA ARRIBA 1 PT_CYBYN18G -BS_KBT7MQ6H LTBP3--AP000769.1/AP000769.3 2.98481124175287 NA NA NA differentially expressed NA NA NA frameshift LTBP3 NA AP000769.1 AP000769.3 Oncogene NA NA NA NA ARRIBA 1 PT_CYBYN18G -BS_KBT7MQ6H LTBP3--AP000769.3/MALAT1 2.98481124175287 NA NA 3.89391742992976 differentially expressed NA NA differentially expressed frameshift LTBP3 NA AP000769.3 MALAT1 Oncogene NA NA CosmicCensus, Oncogene NA ARRIBA 1 PT_CYBYN18G -BS_KBT7MQ6H CADM1--CASP5 0.764847148931186 8.98562414775416 NA NA no change differentially expressed NA NA in-frame CADM1 NA CASP5 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_CYBYN18G -BS_KBT7MQ6H C11orf95--RELA 5.5111378320735 5.32523418850425 NA NA differentially expressed differentially expressed NA NA frameshift C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_CYBYN18G -BS_KBT7MQ6H DKK3--CSTF3-AS1 -0.124555892097447 0.974532271174258 NA NA no change no change NA NA frameshift DKK3 NA CSTF3-AS1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CYBYN18G -BS_KBT7MQ6H STX5--HTATIP2 -0.218793851331368 0.147362949342611 NA NA no change no change NA NA frameshift STX5 NA HTATIP2 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_CYBYN18G -BS_KBT7MQ6H STX5--HTATIP2 -0.218793851331368 0.147362949342611 NA NA no change no change NA NA in-frame STX5 NA HTATIP2 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_CYBYN18G -BS_KBT7MQ6H CARS--PAFAH1B2 1.71030233125429 1.8019716615586 NA NA no change no change NA NA in-frame CARS NA PAFAH1B2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CYBYN18G -BS_KBT7MQ6H PPME1--CADM1 -0.872824220022731 0.764847148931186 NA NA no change no change NA NA frameshift PPME1 NA CADM1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_CYBYN18G -BS_KDSTG5YY MGMT--AL355537.2/AL391869.1 2.22692867254858 NA NA NA differentially expressed NA NA NA frameshift MGMT NA AL355537.2 AL391869.1 CosmicCensus NA NA NA NA ARRIBA 1 PT_2CJ31SBX -BS_KE56MMY0 LHFPL2--TERT/MIR4457 4.88514302894691 15.692091676861 NA NA differentially expressed differentially expressed NA NA frameshift LHFPL2 NA TERT MIR4457 NA CosmicCensus, Oncogene, Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KE56MMY0 ABR--AC134669.2 -1.29086608460143 NA NA NA no change NA NA NA frameshift ABR NA AC134669.2 NA Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KE56MMY0 NFKBIE--GPR156 2.64755508319488 -0.891553571212849 NA NA differentially expressed no change NA NA frameshift NFKBIE NA GPR156 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KE56MMY0 API5--SLX4 2.8546831173809 0.728737644472622 NA NA differentially expressed no change NA NA frameshift API5 NA SLX4 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KE56MMY0 RABEP1--APBB1IP -0.597638570473982 2.8139882332999 NA NA no change differentially expressed NA NA frameshift RABEP1 NA APBB1IP NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KE56MMY0 PTPRH--CDH10/AC091893.1 3.99496598971688 -2.7367647348177 NA NA differentially expressed differentially expressed NA NA frameshift PTPRH NA CDH10 AC091893.1 Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KE56MMY0 ST5--MUC5AC 2.17830576278101 21.6617035666719 NA NA differentially expressed differentially expressed NA NA in-frame ST5 NA MUC5AC NA TumorSuppressorGene, Oncogene Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KE56MMY0 ABR--EVI2B -1.29086608460143 1.76862343670827 NA NA no change no change NA NA frameshift ABR NA EVI2B NA Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KE56MMY0 CDC5L--AL135908.1 2.2493798984288 NA NA NA differentially expressed NA NA NA frameshift CDC5L NA AL135908.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KE56MMY0 ARHGEF2--NTRK1 2.11149462496571 5.90929100181055 NA NA differentially expressed differentially expressed NA NA frameshift ARHGEF2 NA NTRK1 NA Oncogene CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KE56MMY0 EIF3D--DNAL4 2.6268729906938 0.70048982967186 NA NA differentially expressed no change NA NA frameshift EIF3D NA DNAL4 NA NA Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KE56MMY0 VPS53--TACC2 1.13064693876642 0.0799665356029479 NA NA no change no change NA NA frameshift VPS53 NA TACC2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KE56MMY0 PI4KB--ASH1L 1.2221657808372 2.59013996456844 NA NA no change differentially expressed NA NA frameshift PI4KB NA ASH1L NA Kinase TranscriptionFactor NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KE56MMY0 CD44--OFCC1 4.40527903309253 1.39788936275977 NA NA differentially expressed no change NA NA frameshift CD44 NA OFCC1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KE56MMY0 SRF--NOMO2 2.80395084373535 -1.32422541630436 NA NA differentially expressed no change NA NA frameshift SRF NA NOMO2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KE56MMY0 BRSK1--HSPD1P15/CDH18 -2.58390344185451 -0.0370656907136378 NA -1.74914738815675 differentially expressed no change NA no change frameshift BRSK1 NA HSPD1P15 CDH18 Kinase, TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KE56MMY0 SMG5--DDR2 0.0599574881226042 6.20944198890505 NA NA no change differentially expressed NA NA in-frame SMG5 NA DDR2 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA ARRIBA 1 PT_9PJR0ZK7 -BS_KEA474HN KIAA1549--BRAF 4.14885313248434 2.09065935470838 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_EQ5C5TEA -BS_KEA474HN MYT1L--MYT1L -0.75133641894521 -0.75133641894521 NA NA no change no change NA NA frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_EQ5C5TEA -BS_KEA474HN RFX4--RFX4 1.17410928998228 1.17410928998228 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_EQ5C5TEA -BS_KF0ZXDER SCARA5--CACNA2D3 24.812685688321 1.68027355734833 NA NA differentially expressed no change NA NA frameshift SCARA5 NA CACNA2D3 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_CX58G6P6 -BS_KF0ZXDER PLCE1--PIPSL/PLCE1 7.19639867612492 4.07661256027974 NA 7.19639867612492 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_CX58G6P6 -BS_KM2EX0K6 CSMD3--CSMD3 5.39531325245846 5.39531325245846 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PAW18EK3 -BS_KN92S7YQ JAK2--JAK2 2.37523588107998 2.37523588107998 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_HEGTYPQJ -BS_KN92S7YQ PLCE1--PIPSL/PLCE1 1.97604520119882 5.91637142770597 NA 1.97604520119882 no change differentially expressed NA no change frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_HEGTYPQJ -BS_KND4B5CW ATP6V0E2--LINC01510/MET -4.22014736915816 17.0381177552317 NA 5.57130280655861 differentially expressed differentially expressed NA differentially expressed frameshift ATP6V0E2 NA LINC01510 MET NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA ARRIBA 1 PT_2NQPX1R2 -BS_KP735TJ6 TPM3--NTRK1 -0.464645976688514 2.25335525709219 NA NA no change differentially expressed NA NA frameshift TPM3 NA NTRK1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_MSQ6GSVP -BS_KPT2WPHW AL590132.1--KCNH1 NA 2.98292480077658 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_CR2YBSPT -BS_KPT2WPHW CSMD3--CSMD3 2.71221511060106 2.71221511060106 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CR2YBSPT -BS_KPT2WPHW POU6F2--POU6F2 2.21311226100979 2.21311226100979 NA NA differentially expressed differentially expressed NA NA frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_CR2YBSPT -BS_KPT2WPHW KCNH1--AL590132.1 2.98292480077658 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CR2YBSPT -BS_KPT2WPHW AL590132.1--KCNH1 NA 2.98292480077658 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_CR2YBSPT -BS_KPT2WPHW KCNH1--KCNH1 2.98292480077658 2.98292480077658 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CR2YBSPT -BS_KPT2WPHW DCLK2--DCLK2 0.736772569797044 0.736772569797044 NA NA no change no change NA NA frameshift DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_CR2YBSPT -BS_KPT2WPHW TNNI3K--TNNI3K -1.22918452764266 -1.22918452764266 NA NA no change no change NA NA frameshift TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_CR2YBSPT -BS_KPT2WPHW FPGT-TNNI3K--FPGT-TNNI3K 1.50581868215835 1.50581868215835 NA NA no change no change NA NA frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_CR2YBSPT -BS_KPT2WPHW KCNH1--AL590132.1 2.98292480077658 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CR2YBSPT -BS_KPT2WPHW CNTN4--CNTN4 1.74719072916341 1.74719072916341 NA NA no change no change NA NA in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CR2YBSPT -BS_KPT2WPHW ERC2--ERC2 3.17718515524143 3.17718515524143 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CR2YBSPT -BS_KQ6ZW085 KCNH1--KCNH1 2.88136858926657 2.88136858926657 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_SSE4AH59 -BS_KQ6ZW085 AL590132.1--KCNH1 NA 2.88136858926657 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_SSE4AH59 -BS_KQ6ZW085 CSMD3--CSMD3 1.89728717561136 1.89728717561136 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_SSE4AH59 -BS_KQ6ZW085 ERC2--ERC2 2.24080423105456 2.24080423105456 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_SSE4AH59 -BS_KQ6ZW085 KCNH1--AL590132.1 2.88136858926657 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_SSE4AH59 -BS_KQ6ZW085 KCNH1--AL590132.1 2.88136858926657 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_SSE4AH59 -BS_KQ6ZW085 AL590132.1--KCNH1 NA 2.88136858926657 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_SSE4AH59 -BS_KQ6ZW085 FAM135B--FAM135B 1.29177809725197 1.29177809725197 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_SSE4AH59 -BS_KR4MP5ET YAP1--FAM118B 3.94076203531845 1.85425407841019 NA NA differentially expressed no change NA NA frameshift YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_AQWDQW27 -BS_KR4MP5ET YAP1--FAM118B 3.94076203531845 1.85425407841019 NA NA differentially expressed no change NA NA in-frame YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_AQWDQW27 -BS_KSKZ9J7J MN1--AC008667.1 2.91046922078752 NA NA NA differentially expressed NA NA NA frameshift MN1 NA AC008667.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_80NVYCBS -BS_KSKZ9J7J MN1--CXXC5 2.91046922078752 0.838702848899986 NA NA differentially expressed no change NA NA in-frame MN1 NA CXXC5 NA CosmicCensus, Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_80NVYCBS -BS_KSKZ9J7J MN1--PSD2 2.91046922078752 -1.59352601761741 NA NA differentially expressed no change NA NA in-frame MN1 NA PSD2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_80NVYCBS -BS_KSKZ9J7J MN1--CXXC5 2.91046922078752 0.838702848899986 NA NA differentially expressed no change NA NA frameshift MN1 NA CXXC5 NA CosmicCensus, Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_80NVYCBS -BS_KVAJYZ6F PRKCA--SLC44A1 3.95127317556802 1.06824580077447 NA NA differentially expressed no change NA NA in-frame PRKCA NA SLC44A1 NA Kinase NA NA NA NA ARRIBA 1 PT_JW2FDK4W -BS_KVAJYZ6F PRKCA--SLC44A1 3.95127317556802 1.06824580077447 NA NA differentially expressed no change NA NA frameshift PRKCA NA SLC44A1 NA Kinase NA NA NA NA ARRIBA 1 PT_JW2FDK4W -BS_KVAJYZ6F SLC44A1--PRKCA 1.06824580077447 3.95127317556802 NA NA no change differentially expressed NA NA in-frame SLC44A1 NA PRKCA NA NA Kinase NA NA NA ARRIBA 1 PT_JW2FDK4W -BS_KVNGNETA SPOP--LINC02141/AC018554.2 1.59744919005265 NA NA NA no change NA NA NA frameshift SPOP NA LINC02141 AC018554.2 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_GGCQAGPS -BS_KVNGNETA NOC4L--PNCK -0.206316822968886 -0.0612253832216984 NA NA no change no change NA NA in-frame NOC4L NA PNCK NA NA Kinase NA NA NA ARRIBA 1 PT_GGCQAGPS -BS_KVNGNETA JAK2--JAK2 2.89388397490868 2.89388397490868 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_GGCQAGPS -BS_KVNGNETA POU6F2--POU6F2 8.63723707131441 8.63723707131441 NA NA differentially expressed differentially expressed NA NA frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GGCQAGPS -BS_KVV7001W CSMD3--CSMD3 2.11109328366007 2.11109328366007 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_E8XM8JFZ -BS_KX6J8TRK KCNH1--AL590132.1 1.29032899749049 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_XA8ASFJK -BS_KX6J8TRK KCNH1--KCNH1 1.29032899749049 1.29032899749049 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XA8ASFJK -BS_KX6J8TRK ROBO2--ROBO2 1.32056354159118 1.32056354159118 NA NA no change no change NA NA frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_XA8ASFJK -BS_KX6J8TRK AL590132.1--KCNH1 NA 1.29032899749049 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_XA8ASFJK -BS_KX6J8TRK DNAH9--DNAH9 2.5416482946521 2.5416482946521 NA NA differentially expressed differentially expressed NA NA frameshift DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XA8ASFJK -BS_KX6J8TRK ERC2--ERC2 -0.176225225224712 -0.176225225224712 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XA8ASFJK -BS_KX6J8TRK AL590132.1--KCNH1 NA 1.29032899749049 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_XA8ASFJK -BS_KX6J8TRK KCNH1--AL590132.1 1.29032899749049 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_XA8ASFJK -BS_KXH37MPN MYT1L--MYT1L -0.118352432104425 -0.118352432104425 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_AP9P5D7N -BS_KXMYBQ6N RFX4--RFX4 1.30616690410226 1.30616690410226 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_0WKX8Q5X -BS_KYF0Q0E7 BCAS3--SMIM20 2.26432677528137 -3.14332707368218 NA NA differentially expressed differentially expressed NA NA frameshift BCAS3 NA SMIM20 NA Oncogene NA NA NA NA ARRIBA 1 PT_5FR2YA6E -BS_KYF0Q0E7 BCAS3--SEL1L3 2.26432677528137 1.07203251437841 NA NA differentially expressed no change NA NA frameshift BCAS3 NA SEL1L3 NA Oncogene NA NA NA NA ARRIBA 1 PT_5FR2YA6E -BS_KYF0Q0E7 BCAS3--SEL1L3 2.26432677528137 1.07203251437841 NA NA differentially expressed no change NA NA in-frame BCAS3 NA SEL1L3 NA Oncogene NA NA NA NA ARRIBA 1 PT_5FR2YA6E -BS_KZPR01BD VPS53--AL022318.4 1.63922324645767 NA NA NA no change NA NA NA in-frame VPS53 NA AL022318.4 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_3873YK5S -BS_KZPR01BD ZNF57--SF3A2 -0.051922266076602 -0.121112591570955 NA NA no change no change NA NA in-frame ZNF57 NA SF3A2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_3873YK5S -BS_KZPR01BD SLC9A1--CXXC5 0.145488180522553 0.941166930756793 NA NA no change no change NA NA frameshift SLC9A1 NA CXXC5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_3873YK5S -BS_KZPR01BD VPS53--APOBEC3D 1.63922324645767 2.341844378102 NA NA no change differentially expressed NA NA in-frame VPS53 NA APOBEC3D NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_3873YK5S -BS_KZPR01BD MYT1L--MYT1L -0.117509030660004 -0.117509030660004 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_3873YK5S -BS_KZPR01BD ALKBH5--MAP4 1.24917277238146 0.575491259564807 NA NA no change no change NA NA frameshift ALKBH5 NA MAP4 NA NA Oncogene NA NA NA ARRIBA 1 PT_3873YK5S -BS_KZPR01BD EWSR1--PLAGL1 -0.699882273440283 2.33046661562807 NA NA no change differentially expressed NA NA in-frame EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_3873YK5S -BS_KZPR01BD EWSR1--PLAGL1 -0.699882273440283 2.33046661562807 NA NA no change differentially expressed NA NA frameshift EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_3873YK5S -BS_KZPR01BD RFX4--RFX4 1.78371515170999 1.78371515170999 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_3873YK5S -BS_KZPR01BD CAMTA1--SH3PXD2B 0.717824830406318 1.64307823365396 NA NA no change no change NA NA frameshift CAMTA1 NA SH3PXD2B NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_3873YK5S -BS_M0QYNVK8 CRK--ITGAE 0.777044308714694 -2.27490823780217 NA NA no change differentially expressed NA NA frameshift CRK NA ITGAE NA Oncogene NA NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_M0QYNVK8 DENND5A--DLG1 -0.388684260212514 0.172069786627534 NA NA no change no change NA NA frameshift DENND5A NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_M0QYNVK8 ZZEF1--USP6 2.21125162415515 2.05135457209005 NA NA differentially expressed differentially expressed NA NA in-frame ZZEF1 NA USP6 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_M0QYNVK8 NCOR1--YWHAE 4.50566284493151 -0.800677570061718 NA NA differentially expressed no change NA NA in-frame NCOR1 NA YWHAE NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_M0QYNVK8 CRK--ITGAE 0.777044308714694 -2.27490823780217 NA NA no change differentially expressed NA NA in-frame CRK NA ITGAE NA Oncogene NA NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_M0QYNVK8 ME2--AC026898.1/SMAD2 -0.563790277518977 NA NA 2.66997401297741 no change NA NA differentially expressed frameshift ME2 NA AC026898.1 SMAD2 NA NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA ARRIBA 1 PT_37B5JRP1 -BS_M0QYNVK8 CADM2--CADM2 4.90279370595685 4.90279370595685 NA NA differentially expressed differentially expressed NA NA frameshift CADM2 NA CADM2 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_M0QYNVK8 ATRX--Z83820.1 4.23659275950106 NA NA NA differentially expressed NA NA NA frameshift ATRX NA Z83820.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_M0QYNVK8 ABR--ZZEF1 0.0130591180460454 2.21125162415515 NA NA no change differentially expressed NA NA in-frame ABR NA ZZEF1 NA Oncogene NA NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_M0QYNVK8 NRF1--TFR2 1.16008399702849 -1.07490599973672 NA NA no change no change NA NA frameshift NRF1 NA TFR2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_M0QYNVK8 RPA1--SMTNL2 0.726744603524384 4.5940320378334 NA NA no change differentially expressed NA NA in-frame RPA1 NA SMTNL2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_M0QYNVK8 KIT--LINC02465 1.16238187417037 NA NA NA no change NA NA NA frameshift KIT NA LINC02465 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_M0QYNVK8 YWHAE--NLRP1 -0.800677570061718 -0.90985045421288 NA NA no change no change NA NA frameshift YWHAE NA NLRP1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_M0QYNVK8 SNAPC3--ELF5 1.34022243254341 0.0824844057942329 NA NA no change no change NA NA frameshift SNAPC3 NA ELF5 NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_M1PVEHCM ERC2--ERC2 3.06413611377392 3.06413611377392 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_KBDP8ZCR -BS_M1PVEHCM AL590132.1--KCNH1 NA 3.7516905102167 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KBDP8ZCR -BS_M1PVEHCM KCNH1--AL590132.1 3.7516905102167 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_KBDP8ZCR -BS_M1PVEHCM FPGT-TNNI3K--FPGT-TNNI3K 0.681211701133986 0.681211701133986 NA NA no change no change NA NA frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_KBDP8ZCR -BS_M1PVEHCM KCNH1--KCNH1 3.7516905102167 3.7516905102167 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_KBDP8ZCR -BS_M1PVEHCM TNNI3K--TNNI3K -0.92262046271937 -0.92262046271937 NA NA no change no change NA NA frameshift TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_KBDP8ZCR -BS_M1PVEHCM AL590132.1--KCNH1 NA 3.7516905102167 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KBDP8ZCR -BS_M1PVEHCM KCNH1--AL590132.1 3.7516905102167 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_KBDP8ZCR -BS_M1T1K5WV KCNH1--KCNH1 4.38810987959662 4.38810987959662 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_C94VR1Y2 -BS_M1T1K5WV AL590132.1--KCNH1 NA 4.38810987959662 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_C94VR1Y2 -BS_M1T1K5WV EEA1--RNU6-1329P/LINC02413 4.93210610375618 NA NA NA differentially expressed NA NA NA frameshift EEA1 NA RNU6-1329P LINC02413 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_C94VR1Y2 -BS_M1T1K5WV KCNH1--AL590132.1 4.38810987959662 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_C94VR1Y2 -BS_M1T1K5WV KCNH1--AL590132.1 4.38810987959662 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_C94VR1Y2 -BS_M1T1K5WV AL590132.1--KCNH1 NA 4.38810987959662 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_C94VR1Y2 -BS_M4NVX721 KCNH1--KCNH1 2.08174243082969 2.08174243082969 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_FWD7NZQ0 -BS_M4NVX721 PRDM2--PRDM2 0.307787780723811 0.307787780723811 NA NA no change no change NA NA frameshift PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_FWD7NZQ0 -BS_M4NVX721 CSMD3--CSMD3 0.543048603232541 0.543048603232541 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_FWD7NZQ0 -BS_M4NVX721 KCNH1--AL590132.1 2.08174243082969 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_FWD7NZQ0 -BS_M4NVX721 ROBO2--ROBO2 2.05170882123773 2.05170882123773 NA NA differentially expressed differentially expressed NA NA frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_FWD7NZQ0 -BS_M4NVX721 ERC2--ERC2 1.90785354702004 1.90785354702004 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_FWD7NZQ0 -BS_M4NVX721 ZNF385D--ZNF385D 2.20218652127543 2.20218652127543 NA NA differentially expressed differentially expressed NA NA in-frame ZNF385D NA ZNF385D NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_FWD7NZQ0 -BS_M4NVX721 AL590132.1--KCNH1 NA 2.08174243082969 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_FWD7NZQ0 -BS_M4NVX721 MYT1L--MYT1L 0.810155762078621 0.810155762078621 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_FWD7NZQ0 -BS_M4NVX721 KCNH1--AL590132.1 2.08174243082969 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_FWD7NZQ0 -BS_M4NVX721 ARHGAP35--AP2S1/ARHGAP35 2.27540976392622 0.384694182884399 NA 2.27540976392622 differentially expressed no change NA differentially expressed frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_FWD7NZQ0 -BS_M4NVX721 JAK2--JAK2 0.751066482979368 0.751066482979368 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_FWD7NZQ0 -BS_M4NVX721 EPHA5--EPHA5 2.25937693876882 2.25937693876882 NA NA differentially expressed differentially expressed NA NA in-frame EPHA5 NA EPHA5 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_FWD7NZQ0 -BS_M4TTKPNR KIAA1549--BRAF 3.53241683330873 1.16591056519129 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_YKVK5HTK -BS_M4TTKPNR CSMD3--CSMD3 2.86562385203518 2.86562385203518 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_YKVK5HTK -BS_M7HCF7DW CLIP1--ROS1 0.701996602600803 4.94975375488994 NA NA no change differentially expressed NA NA in-frame CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_2WVW55DA -BS_M7QJ8VF0 GPC5--MIR17HG/GPC5 1.62401513437384 27.8159238555117 NA 1.62401513437384 no change differentially expressed NA no change frameshift GPC5 NA MIR17HG GPC5 TumorSuppressorGene, CosmicCensus, Oncogene NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA ARRIBA 1 PT_QD6KKKJH -BS_M85CXHDV EPHA3--TSKU 11.4753137334033 6.21890968726958 NA NA differentially expressed differentially expressed NA NA in-frame EPHA3 NA TSKU NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_6PP78VNE -BS_M85CXHDV ROBO2--MTCYBP27/RNU6-976P 2.29301128036544 NA NA NA differentially expressed NA NA NA frameshift ROBO2 NA MTCYBP27 RNU6-976P CosmicCensus NA NA NA NA ARRIBA 1 PT_6PP78VNE -BS_M86ECPHK DSTYK--TNFRSF13C 0.431290336285335 5.20846970101954 NA NA no change differentially expressed NA NA frameshift DSTYK NA TNFRSF13C NA Kinase NA NA NA NA ARRIBA 1 PT_74XM7BV7 -BS_M8EA6R2A CABLES1--LAMA3 -1.0960377134666 -1.00103571124037 NA NA no change no change NA NA frameshift CABLES1 NA LAMA3 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_4347ZBEX -BS_M8M56Z4Y KIAA1549--BRAF 4.62403990481821 0.673237602007822 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_K30AWQ8A -BS_M8M56Z4Y C1orf61--PCDHGC3 0.742805241041039 3.51345393038425 NA NA no change differentially expressed NA NA in-frame C1orf61 NA PCDHGC3 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_K30AWQ8A -BS_M9C4RY4P SH3PXD2A--HTRA1 4.53716023239853 0.11347043758797 NA NA differentially expressed no change NA NA in-frame SH3PXD2A NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_NMZBRFYS -BS_M9C4RY4P SH3PXD2A--HTRA1 4.53716023239853 0.11347043758797 NA NA differentially expressed no change NA NA frameshift SH3PXD2A NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_NMZBRFYS -BS_MA1A3GY0 SATB2--STAG2 4.85522662151378 0.753473510238843 NA NA differentially expressed no change NA NA in-frame SATB2 NA STAG2 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_4XWYZYJS -BS_MA2T7ET1 ERC2--ERC2 0.0375024252669641 0.0375024252669641 NA NA no change no change NA NA frameshift ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_1Z015H6V -BS_MB7WN0ZB ZEB2--ZEB2 1.60503988859396 1.60503988859396 NA NA no change no change NA NA frameshift ZEB2 NA ZEB2 NA Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_5BWZA0NT -BS_MBSTWZA6 KIAA1549--BRAF 3.57240037576415 1.49703178104305 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_9C2G356W -BS_MBSTWZA6 CSMD3--CSMD3 3.65091307964838 3.65091307964838 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_9C2G356W -BS_ME3HKN2C ERC2--ERC2 0.224491826683595 0.224491826683595 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3WA1XB8G -BS_ME3HKN2C RFX4--RFX4 1.86738639858151 1.86738639858151 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_3WA1XB8G -BS_ME3HKN2C GYG2--SRY/RNASEH2CP1 3.55216189974472 -0.189827062338771 NA 59.9209665291559 differentially expressed no change NA differentially expressed frameshift GYG2 NA SRY RNASEH2CP1 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_3WA1XB8G -BS_MF47B9ZW KCNH1--AL590132.1 3.57797207955671 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_7F485CXV -BS_MF47B9ZW KCNH1--KCNH1 3.57797207955671 3.57797207955671 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7F485CXV -BS_MF47B9ZW AL590132.1--KCNH1 NA 3.57797207955671 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_7F485CXV -BS_MF47B9ZW KCNH1--AL590132.1 3.57797207955671 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_7F485CXV -BS_MF47B9ZW ERC2--ERC2 3.38748946358359 3.38748946358359 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7F485CXV -BS_MF9X3PKH KIAA1549--BRAF 3.76393062789238 1.25377214643967 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_XXZHRPNM -BS_MF9X3PKH RFX4--RFX4 0.910824508726124 0.910824508726124 NA NA no change no change NA NA in-frame RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_XXZHRPNM -BS_MKM0EEN1 ZNF423--OGFOD1 3.26664534942448 1.32040297646766 NA NA differentially expressed no change NA NA frameshift ZNF423 NA OGFOD1 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_W4XVT4AJ -BS_MKM0EEN1 FANCC--FANCC 1.38851992457729 1.38851992457729 NA NA no change no change NA NA in-frame FANCC NA FANCC NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_W4XVT4AJ -BS_MKM0EEN1 MAP2--MAP2 0.566502438573039 0.566502438573039 NA NA no change no change NA NA in-frame MAP2 NA MAP2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_W4XVT4AJ -BS_MKM0EEN1 PHACTR1--HRASLS2 0.0717632305386956 7.3528802657007 NA NA no change differentially expressed NA NA frameshift PHACTR1 NA HRASLS2 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_W4XVT4AJ -BS_MKM0EEN1 AK3--DMRT1 0.334928802409354 21.3980796004468 NA NA no change differentially expressed NA NA frameshift AK3 NA DMRT1 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_W4XVT4AJ -BS_MKM0EEN1 PHACTR1--HRASLS2 0.0717632305386956 7.3528802657007 NA NA no change differentially expressed NA NA in-frame PHACTR1 NA HRASLS2 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_W4XVT4AJ -BS_MKM0EEN1 ITGA9--CLASP2 6.06042640918812 0.990152027783002 NA NA differentially expressed no change NA NA in-frame ITGA9 NA CLASP2 NA Oncogene NA NA NA NA ARRIBA 1 PT_W4XVT4AJ -BS_MKP2Y41Z RFX4--RFX4 2.59595358633295 2.59595358633295 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_3R0P995B -BS_MM20BVW9 ZNF224--CDC14C/AC091730.1 0.436527694328666 1.53076914918955 NA NA no change no change NA NA frameshift ZNF224 NA CDC14C AC091730.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JXSDFPNM -BS_MM20BVW9 CPQ--ZNF774 3.17545755199143 0.517863885669491 NA NA differentially expressed no change NA NA frameshift CPQ NA ZNF774 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_JXSDFPNM -BS_MN5XVP5A ZNF730--ATF7IP 6.75552396883313 5.93401983321037 NA NA differentially expressed differentially expressed NA NA frameshift ZNF730 NA ATF7IP NA TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_MN5XVP5A MTMR3--TRMT11 0.936837325040085 -1.78560875246957 NA NA no change no change NA NA frameshift MTMR3 NA TRMT11 NA Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_MN5XVP5A ATF7IP--LINC02484/AC093689.1 5.93401983321037 NA NA NA differentially expressed NA NA NA frameshift ATF7IP NA LINC02484 AC093689.1 Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_MN5XVP5A PEX14--UBIAD1 -0.3858734700498 4.10524171265897 NA NA no change differentially expressed NA NA frameshift PEX14 NA UBIAD1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_MN5XVP5A MTOR--PEX14 -0.01480563768093 -0.3858734700498 NA NA no change no change NA NA frameshift MTOR NA PEX14 NA CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_MN5XVP5A DCHS1--ABTB2 6.96627834328837 1.67673959547744 NA NA differentially expressed no change NA NA in-frame DCHS1 NA ABTB2 NA NA Oncogene NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_MN5XVP5A STIM1--DLG1 1.24640725640014 0.329412945509222 NA NA no change no change NA NA in-frame STIM1 NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_MN5XVP5A BICD1--PACRG 2.74293265524352 -0.160257158995201 NA NA differentially expressed no change NA NA frameshift BICD1 NA PACRG NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_MN5XVP5A APIP--EHF -1.58631144792918 5.12286166330891 NA NA no change differentially expressed NA NA frameshift APIP NA EHF NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_MN5XVP5A DLG1--LINC01063 0.329412945509222 0.180271355478027 NA NA no change no change NA NA frameshift DLG1 NA LINC01063 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_MQCKXD60 ASXL2--ASXL2 9.26657257636877 9.26657257636877 NA NA differentially expressed differentially expressed NA NA frameshift ASXL2 NA ASXL2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_FCM7XPVR -BS_MQCKXD60 C11orf95--RELA 5.30089157842654 4.09977894626653 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_FCM7XPVR -BS_MQCKXD60 ATF2--AC104088.1/AC078883.4 -0.53753845082687 15.8294970965139 NA -0.31833650306979 no change differentially expressed NA no change frameshift ATF2 NA AC104088.1 AC078883.4 Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_FCM7XPVR -BS_MQCKXD60 DNMT3A--LRP1B 5.72349495545616 -1.27027321386129 NA NA differentially expressed no change NA NA frameshift DNMT3A NA LRP1B NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_FCM7XPVR -BS_MT15SGJN C11orf95--RELA 3.50461475732844 3.3747595646412 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_99S5BPE3 -BS_MV6ASWV9 AUTS2--ELK3 6.08545008634162 2.30528469043418 NA NA differentially expressed differentially expressed NA NA frameshift AUTS2 NA ELK3 NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_ESHACWF6 -BS_MV6ASWV9 CDCP1--SRGAP1 9.70204631166557 7.30439275245447 NA NA differentially expressed differentially expressed NA NA in-frame CDCP1 NA SRGAP1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_ESHACWF6 -BS_MV6ASWV9 TFDP1--FAM122C 2.38164765082892 2.46222164258228 NA NA differentially expressed differentially expressed NA NA frameshift TFDP1 NA FAM122C NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ESHACWF6 -BS_MV6ASWV9 ZNF428--RNF128 0.931138559538287 -1.63273232541835 NA NA no change no change NA NA frameshift ZNF428 NA RNF128 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ESHACWF6 -BS_MV6ASWV9 DYRK1A--AC092155.1 3.56870656549271 21.9165058586434 NA NA differentially expressed differentially expressed NA NA frameshift DYRK1A NA AC092155.1 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_ESHACWF6 -BS_MV6ASWV9 SRGAP1--CDCP1 7.30439275245447 9.70204631166557 NA NA differentially expressed differentially expressed NA NA in-frame SRGAP1 NA CDCP1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_ESHACWF6 -BS_MV6ASWV9 TFDP1--PLAC1 2.38164765082892 4.41932491548367 NA NA differentially expressed differentially expressed NA NA frameshift TFDP1 NA PLAC1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ESHACWF6 -BS_MVW01FPB PLEKHA8--PLEKHA8 1.78707246638805 1.78707246638805 NA NA no change no change NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3KM9W8S8 -BS_MX23ZY0Y PTPRJ--MIR8070/USP47 6.94172669069025 NA NA -0.243139922765431 differentially expressed NA NA no change frameshift PTPRJ NA MIR8070 USP47 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_MX23ZY0Y ASCC1--CCAR1 1.89484380158755 1.37454799915113 NA NA no change no change NA NA in-frame ASCC1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_MX23ZY0Y PCGF6--LINC01515 1.30280733528132 7.3510656964377 NA NA no change differentially expressed NA NA frameshift PCGF6 NA LINC01515 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_MX23ZY0Y ADGRL3--NFXL1 5.48554981402008 3.67651675417061 NA NA differentially expressed differentially expressed NA NA frameshift ADGRL3 NA NFXL1 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_MX23ZY0Y ASCC1--CCAR1 1.89484380158755 1.37454799915113 NA NA no change no change NA NA frameshift ASCC1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_MX23ZY0Y NUP98--PRMT3/HMGB1P40 1.75850803699294 0.620079564058278 NA NA no change no change NA NA frameshift NUP98 NA PRMT3 HMGB1P40 TumorSuppressorGene, CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_MX23ZY0Y ASCC1--CTNNA3 1.89484380158755 -0.734738311859846 NA NA no change no change NA NA frameshift ASCC1 NA CTNNA3 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_MX23ZY0Y FAM155A--SPRY2 0.42351897265262 3.76548339520936 NA NA no change differentially expressed NA NA frameshift FAM155A NA SPRY2 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_MY9D8XZ1 ADAM12--ADAM12 2.53133843875623 2.53133843875623 NA NA differentially expressed differentially expressed NA NA frameshift ADAM12 NA ADAM12 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_YPCR2XRS -BS_MY9D8XZ1 RFX4--RFX4 1.25885856783573 1.25885856783573 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_YPCR2XRS -BS_MY9D8XZ1 ERC2--RAF1 -0.709615977872377 -0.854688011606934 NA NA no change no change NA NA in-frame ERC2 NA RAF1 NA Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_YPCR2XRS -BS_N0877CX1 BCR--KIAA1671 -1.56171258186862 2.05906756012766 NA NA no change differentially expressed NA NA frameshift BCR NA KIAA1671 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RRG1V7EP -BS_N1E0H8YQ MYRFL--MYRFL 1.73910097032138 1.73910097032138 NA NA no change no change NA NA frameshift MYRFL NA MYRFL NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_CGPJY881 -BS_N1E0H8YQ CSMD3--CSMD3 2.49185963582259 2.49185963582259 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CGPJY881 -BS_N1E0H8YQ KIAA1549--BRAF 3.64362177396909 1.75466649189317 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_CGPJY881 -BS_N5DVEJXT C11orf95--RELA 5.49771438281932 5.1039710042587 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_VBVZ2NAR -BS_N5DVEJXT RFX4--RFX4 2.29648059404909 2.29648059404909 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VBVZ2NAR -BS_N5DVEJXT LTBP3--AC090559.1 3.97695252545668 NA NA NA differentially expressed NA NA NA frameshift LTBP3 NA AC090559.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_VBVZ2NAR -BS_N6N147BY KAT6A--AC016868.1/GOLGA7 5.49687306901801 NA NA -1.58872367991778 differentially expressed NA NA no change frameshift KAT6A NA AC016868.1 GOLGA7 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_X648RVMK -BS_N6NE6B3W MCM9--MCM9 1.48388204738549 1.48388204738549 NA NA no change no change NA NA in-frame MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_H0HWHRPB -BS_N6NE6B3W CDH10--CDH10 0.533017844689151 0.533017844689151 NA NA no change no change NA NA frameshift CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_H0HWHRPB -BS_N6NE6B3W CSMD3--CSMD3 0.585048991177327 0.585048991177327 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_H0HWHRPB -BS_N6NE6B3W RFX4--RFX4 0.172693479456928 0.172693479456928 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_H0HWHRPB -BS_N6NE6B3W ST18--ST18 2.28259622466794 2.28259622466794 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_H0HWHRPB -BS_N6NE6B3W FAM135B--FAM135B 2.52278768558364 2.52278768558364 NA NA differentially expressed differentially expressed NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_H0HWHRPB -BS_N6NE6B3W CSMD1--CSMD1 2.80933964887444 2.80933964887444 NA NA differentially expressed differentially expressed NA NA frameshift CSMD1 NA CSMD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_H0HWHRPB -BS_N6NE6B3W ERC2--ERC2 1.14052472378994 1.14052472378994 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_H0HWHRPB -BS_N6NE6B3W FYN--FYN 1.17312438550703 1.17312438550703 NA NA no change no change NA NA frameshift FYN NA FYN NA Kinase, Oncogene, Kinase Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_H0HWHRPB -BS_N6NE6B3W ARHGAP35--AP2S1/ARHGAP35 1.93758689354974 -0.596259882821998 NA 1.93758689354974 no change no change NA no change frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_H0HWHRPB -BS_N6NE6B3W MTSS1--MTSS1 2.32012532868115 2.32012532868115 NA NA differentially expressed differentially expressed NA NA frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_H0HWHRPB -BS_N6NE6B3W PLEKHA8--PLEKHA8 2.28256743058207 2.28256743058207 NA NA differentially expressed differentially expressed NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_H0HWHRPB -BS_N8J1DP02 RFX4--RFX4 1.92509618456065 1.92509618456065 NA NA no change no change NA NA in-frame RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VE0Q731Y -BS_N8J1DP02 MYO3A--MYO3A 3.93377223912116 3.93377223912116 NA NA differentially expressed differentially expressed NA NA frameshift MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_VE0Q731Y -BS_N8J1DP02 CSMD3--CSMD3 0.359070655918653 0.359070655918653 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_VE0Q731Y -BS_NB42PWZN C11orf95--RELA 5.88272008935557 5.34465212084127 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_99S5BPE3 -BS_NB42PWZN RBFOX2--OPCML 0.592444488490874 -0.530831412470435 NA NA no change no change NA NA frameshift RBFOX2 NA OPCML NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_99S5BPE3 -BS_NB42PWZN SOX5--DUSP16 7.13664038262836 3.44118176512234 NA NA differentially expressed differentially expressed NA NA frameshift SOX5 NA DUSP16 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_99S5BPE3 -BS_NB5XWMJT BRINP1--BRINP1 1.13661099922563 1.13661099922563 NA NA no change no change NA NA frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_ZR8MQRVG -BS_NB5XWMJT KIAA1549--BRAF 3.6958372304439 0.761503678834143 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_ZR8MQRVG -BS_NB5XWMJT RFX4--RFX4 1.73779703421555 1.73779703421555 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ZR8MQRVG -BS_NDFDQBCZ HMGA2--NCOR2 22.0947965752701 2.74222615816646 NA NA differentially expressed differentially expressed NA NA in-frame HMGA2 NA NCOR2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_QPY0H50V -BS_NDFDQBCZ NCOR2--HMGA2 2.74222615816646 22.0947965752701 NA NA differentially expressed differentially expressed NA NA in-frame NCOR2 NA HMGA2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_QPY0H50V -BS_NDN62H0S MYT1L--MYT1L 0.294808446448857 0.294808446448857 NA NA no change no change NA NA frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_124TTG01 -BS_NDRDM2A9 KDM6A--KDM6A 0.221303557100888 0.221303557100888 NA NA no change no change NA NA frameshift KDM6A NA KDM6A NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PZVE3FWF -BS_NFRXNAFE ERC2--ERC2 2.26769944810697 2.26769944810697 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_RXT6KRR6 -BS_NFRXNAFE JAK2--JAK2 1.05557636380963 1.05557636380963 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RXT6KRR6 -BS_NGHK9RZP TP53BP1--PRR32/Z82209.1 1.66122166711595 -0.479358381273428 NA NA no change no change NA NA frameshift TP53BP1 NA PRR32 Z82209.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP PTPRU--AL807740.1 0.826058735460997 NA NA NA no change NA NA NA frameshift PTPRU NA AL807740.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP NCOA6--NCOA6 0.716550328298229 0.716550328298229 NA NA no change no change NA NA frameshift NCOA6 NA NCOA6 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP PTPRU--AL928596.1/AL807740.1 0.826058735460997 NA NA NA no change NA NA NA frameshift PTPRU NA AL928596.1 AL807740.1 Oncogene NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP MAP3K4--MAP3K4 -0.596887094815724 -0.596887094815724 NA NA no change no change NA NA frameshift MAP3K4 NA MAP3K4 NA Kinase, TumorSuppressorGene, Kinase Kinase, TumorSuppressorGene, Kinase NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP N4BP2--N4BP2 5.26939309117396 5.26939309117396 NA NA differentially expressed differentially expressed NA NA frameshift N4BP2 NA N4BP2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP NEK10--NEK10 4.0458007737382 4.0458007737382 NA NA differentially expressed differentially expressed NA NA frameshift NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP C11orf95--RELA 5.02055255084435 5.33970834116522 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP NUP214--NUP214 1.85309507327042 1.85309507327042 NA NA no change no change NA NA in-frame NUP214 NA NUP214 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP DNAH9--DNAH9 3.00887536518982 3.00887536518982 NA NA differentially expressed differentially expressed NA NA frameshift DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGHK9RZP MAST4--MAST4 3.15985578512675 3.15985578512675 NA NA differentially expressed differentially expressed NA NA in-frame MAST4 NA MAST4 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_2SCVQ2N6 -BS_NGSG2KB6 ZNF207--U91319.1 1.12365049663053 -0.644669060212207 NA NA no change no change NA NA frameshift ZNF207 NA U91319.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KTRJ8TFY -BS_NGSG2KB6 UROS--PSAP -0.541546563001072 0.00591136254125253 NA NA no change no change NA NA frameshift UROS NA PSAP NA NA Oncogene NA NA NA ARRIBA 1 PT_KTRJ8TFY -BS_NGSG2KB6 DENND1B--NEK7 0.932780560563454 2.31659579989082 NA NA no change differentially expressed NA NA frameshift DENND1B NA NEK7 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_KTRJ8TFY -BS_NGSG2KB6 LNX1--RNF216 0.647015442192811 0.534589385220346 NA NA no change no change NA NA in-frame LNX1 NA RNF216 NA NA Oncogene NA NA NA ARRIBA 1 PT_KTRJ8TFY -BS_NGSG2KB6 FAM200B--SOGA1 1.24758887813719 0.292166942358043 NA NA no change no change NA NA frameshift FAM200B NA SOGA1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KTRJ8TFY -BS_NH7K4CD9 ROR1--AP001360.2/TRIM29 10.5564046010821 NA NA 2.78145218027854 differentially expressed NA NA differentially expressed frameshift ROR1 NA AP001360.2 TRIM29 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_ZD45GXZ0 -BS_NH7K4CD9 GSK3B--LINC02485/U6 1.73915214520952 NA NA -0.0294627825494395 no change NA NA no change frameshift GSK3B NA LINC02485 U6 Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_ZD45GXZ0 -BS_NH7K4CD9 NFIA--PATJ 5.09510354939009 NA NA NA differentially expressed NA NA NA frameshift NFIA NA PATJ NA TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_ZD45GXZ0 -BS_NH7K4CD9 NFIA--TM2D1 5.09510354939009 -1.02163447774748 NA NA differentially expressed no change NA NA in-frame NFIA NA TM2D1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ZD45GXZ0 -BS_NH7K4CD9 CNNM2--BMPR1B 3.01790742725596 2.82795536804947 NA NA differentially expressed differentially expressed NA NA frameshift CNNM2 NA BMPR1B NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_ZD45GXZ0 -BS_NJ4WPQVK HEYL--RACK1 1.86142201411719 NA NA NA no change NA NA NA frameshift HEYL NA RACK1 NA TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_EV71W1JW -BS_NJ4WPQVK NCOR1--DNAH9 3.48104627967117 0.519120982722368 NA NA differentially expressed no change NA NA in-frame NCOR1 NA DNAH9 NA CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_EV71W1JW -BS_NJ4WPQVK ATRX--CYLC1 0.695523251243245 300.289828154827 NA NA no change differentially expressed NA NA frameshift ATRX NA CYLC1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_EV71W1JW -BS_NJ4WPQVK CHCHD3--EXOC4 2.30590711323194 2.44628916581444 NA NA differentially expressed differentially expressed NA NA in-frame CHCHD3 NA EXOC4 NA TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_EV71W1JW -BS_NJ4WPQVK ZNF451--CPNE5 2.68384792106204 -0.392062188479404 NA NA differentially expressed no change NA NA in-frame ZNF451 NA CPNE5 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_EV71W1JW -BS_NJ4WPQVK TSC22D1--P2RY14 -4.09614158807687 -0.747117143428074 NA NA differentially expressed no change NA NA frameshift TSC22D1 NA P2RY14 NA TumorSuppressorGene, TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_EV71W1JW -BS_NJ4WPQVK WDR70--CTNND2 3.31688963625366 0.230619531073052 NA NA differentially expressed no change NA NA in-frame WDR70 NA CTNND2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_EV71W1JW -BS_NJ4WPQVK TMEM14B--DST 1.01404628774074 0.393346064324939 NA NA no change no change NA NA frameshift TMEM14B NA DST NA NA Oncogene NA NA NA ARRIBA 1 PT_EV71W1JW -BS_NKRYMHEP ST18--ST18 3.04935679870791 3.04935679870791 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RT1J9P8J -BS_NKRYMHEP ARHGAP35--AP2S1/ARHGAP35 3.37781279597819 -0.573557383464317 NA 3.37781279597819 differentially expressed no change NA differentially expressed frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_RT1J9P8J -BS_NKRYMHEP WNK3--WNK3 10.7593093375989 10.7593093375989 NA NA differentially expressed differentially expressed NA NA in-frame WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_RT1J9P8J -BS_NKRYMHEP MYT1L--MYT1L 2.02479892100247 2.02479892100247 NA NA differentially expressed differentially expressed NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RT1J9P8J -BS_NKRYMHEP JAK2--JAK2 1.81808333496779 1.81808333496779 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RT1J9P8J -BS_NKRYMHEP SNCAIP--SNCAIP 4.93595944420471 4.93595944420471 NA NA differentially expressed differentially expressed NA NA frameshift SNCAIP NA SNCAIP NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_RT1J9P8J -BS_NPQJ20KX KIAA1549--BRAF 4.04779555698381 0.908435997674997 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_6MWPJ96F -BS_NQB91P48 KIAA1549--BRAF 5.5419101514765 1.74700109860292 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_C1M4YF1R -BS_NQB91P48 PLCE1--PIPSL/PLCE1 4.49119241047971 3.76438911541161 NA 4.49119241047971 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_C1M4YF1R -BS_NR3P3GN2 ARHGAP35--AP2S1/ARHGAP35 2.04528264672208 0.864028767063312 NA 2.04528264672208 differentially expressed no change NA differentially expressed frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_DJ106XYS -BS_NR9FRY5T ZEB2--ARHGAP15 2.77661068539252 9.16826128244073 NA NA differentially expressed differentially expressed NA NA frameshift ZEB2 NA ARHGAP15 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_YDWBWTVN -BS_NRFQEQKP KIAA1549--BRAF 4.53947311275515 2.41161208910699 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_3RN24N9X -BS_NRFQEQKP NRCAM--ZNF532 2.40337370753035 1.95184778520861 NA NA differentially expressed no change NA NA in-frame NRCAM NA ZNF532 NA TumorSuppressorGene, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_3RN24N9X -BS_NRFQEQKP CSMD3--CSMD3 4.61797685191957 4.61797685191957 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_3RN24N9X -BS_NRPG5K4K RFX4--RFX4 1.65296566173785 1.65296566173785 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_962TCBVR -BS_NRPG5K4K CSMD3--CSMD3 2.42253157083095 2.42253157083095 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_962TCBVR -BS_NRPG5K4K KIAA1549--BRAF 3.74706681048251 1.42655117955396 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_962TCBVR -BS_NT9NZYFD AL590132.1--KCNH1 NA 2.65501621838205 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_FC0EF5ZT -BS_NT9NZYFD KCNH1--KCNH1 2.65501621838205 2.65501621838205 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_FC0EF5ZT -BS_NT9NZYFD AL590132.1--KCNH1 NA 2.65501621838205 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_FC0EF5ZT -BS_NT9NZYFD ERC2--ERC2 1.68200515194201 1.68200515194201 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_FC0EF5ZT -BS_NT9NZYFD KCNH1--AL590132.1 2.65501621838205 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_FC0EF5ZT -BS_NT9NZYFD KCNH1--AL590132.1 2.65501621838205 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_FC0EF5ZT -BS_NT9NZYFD CREB3L2--TMEM178B 3.58013932852225 1.74767652863148 NA NA differentially expressed no change NA NA frameshift CREB3L2 NA TMEM178B NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_FC0EF5ZT -BS_NT9NZYFD EPHA5--EPHA5 1.02499754746863 1.02499754746863 NA NA no change no change NA NA in-frame EPHA5 NA EPHA5 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_FC0EF5ZT -BS_NT9NZYFD POU6F2--POU6F2 2.60059443962191 2.60059443962191 NA NA differentially expressed differentially expressed NA NA frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_FC0EF5ZT -BS_NT9NZYFD FRK--FRK/NT5DC1 2.25409245109802 2.25409245109802 NA 1.79186712677459 differentially expressed differentially expressed NA no change frameshift FRK NA FRK NT5DC1 Kinase, TumorSuppressorGene, Kinase Kinase, TumorSuppressorGene, Kinase NA NA NA ARRIBA 1 PT_FC0EF5ZT -BS_NT9NZYFD TTC39B--TTC39B -0.273160194923072 -0.273160194923072 NA NA no change no change NA NA in-frame TTC39B NA TTC39B NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_FC0EF5ZT -BS_NVKGSMXS KCNH1--KCNH1 3.80828793984113 3.80828793984113 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DA4WFQ96 -BS_NVKGSMXS ERC2--ERC2 3.05877016798324 3.05877016798324 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DA4WFQ96 -BS_NVKGSMXS KCNH1--AL590132.1 3.80828793984113 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DA4WFQ96 -BS_NVKGSMXS AL590132.1--KCNH1 NA 3.80828793984113 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DA4WFQ96 -BS_NYS8TRCB AL590132.1--KCNH1 NA 1.32612157964562 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_76Q72M5T -BS_NYS8TRCB RFX4--RFX4 1.54750560444767 1.54750560444767 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_76Q72M5T -BS_NYS8TRCB KCNH1--KCNH1 1.32612157964562 1.32612157964562 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_76Q72M5T -BS_NYS8TRCB AL590132.1--KCNH1 NA 1.32612157964562 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_76Q72M5T -BS_NYS8TRCB KCNH1--AL590132.1 1.32612157964562 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_76Q72M5T -BS_NYS8TRCB CSMD3--CSMD3 1.41131014671978 1.41131014671978 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_76Q72M5T -BS_NYS8TRCB KCNH1--AL590132.1 1.32612157964562 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_76Q72M5T -BS_NYS8TRCB ERC2--ERC2 1.64737521677661 1.64737521677661 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_76Q72M5T -BS_NZ71XCG3 SNCAIP--MGC32805/LINC02201 5.77766467125673 -0.353302503913127 NA NA differentially expressed no change NA NA frameshift SNCAIP NA MGC32805 LINC02201 Oncogene NA NA NA NA ARRIBA 1 PT_7FQ6VECA -BS_NZ71XCG3 ST18--ST18 3.25982343074217 3.25982343074217 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_7FQ6VECA -BS_P0QF87WC EXOC4--CHCHD3 4.15697416997172 2.70766401854677 NA NA differentially expressed differentially expressed NA NA in-frame EXOC4 NA CHCHD3 NA Oncogene TranscriptionFactor NA NA TCGAFusion ARRIBA 1 PT_8GN3TQRM -BS_P0QF87WC ATF6--RPL31P13/AL592402.1 2.91758765717543 -0.124958934136626 NA NA differentially expressed no change NA NA frameshift ATF6 NA RPL31P13 AL592402.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_P0QF87WC NTRK3--NTRK3 0.708352937487962 0.708352937487962 NA NA no change no change NA NA frameshift NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_P0QF87WC EXOC4--CHCHD3 4.15697416997172 2.70766401854677 NA NA differentially expressed differentially expressed NA NA frameshift EXOC4 NA CHCHD3 NA Oncogene TranscriptionFactor NA NA TCGAFusion ARRIBA 1 PT_8GN3TQRM -BS_P0QF87WC KLHL7--RNF216 1.51747853066411 2.56147075939561 NA NA no change differentially expressed NA NA frameshift KLHL7 NA RNF216 NA NA Oncogene NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_P0W5VJH4 DNAH9--DNAH9 1.11688844130067 1.11688844130067 NA NA no change no change NA NA frameshift DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DH8A0SNQ -BS_P0W5VJH4 PKHD1--PKHD1 137.889494169588 137.889494169588 NA NA differentially expressed differentially expressed NA NA frameshift PKHD1 NA PKHD1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DH8A0SNQ -BS_P0W5VJH4 NEK10--NEK10 3.6853150669116 3.6853150669116 NA NA differentially expressed differentially expressed NA NA in-frame NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_DH8A0SNQ -BS_P277RYX5 GATB--NIM1K -0.638946864229146 2.11349616566539 NA NA no change differentially expressed NA NA frameshift GATB NA NIM1K NA NA Kinase NA NA NA ARRIBA 1 PT_Y7F2JZMQ -BS_P39SQPTS TTYH1--MIR512-2/MIR1323 0.153946753059526 NA NA NA no change NA NA NA frameshift TTYH1 NA MIR512-2 MIR1323 Oncogene NA NA NA NA ARRIBA 1 PT_01MZ62KG -BS_P39SQPTS MYT1L--MYT1L 1.46408480574648 1.46408480574648 NA NA no change no change NA NA frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_01MZ62KG -BS_P44PE00R ERC2--ERC2 2.95165073766078 2.95165073766078 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_APPA7SFD -BS_P44PE00R FAM135B--FAM135B 2.07844565203401 2.07844565203401 NA NA differentially expressed differentially expressed NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_APPA7SFD -BS_P4D8Y3S8 BCR--MKL1 -1.61621697729864 1.70871835199541 NA NA no change no change NA NA frameshift BCR NA MKL1 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_F1086Z0A -BS_P4D8Y3S8 WBP1L--HIVEP3 1.88963410320396 1.73120131769286 NA NA no change no change NA NA frameshift WBP1L NA HIVEP3 NA NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_F1086Z0A -BS_P4NX9MPA KCNH1--KCNH1 0.942426579237604 0.942426579237604 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DFQAH7RS -BS_P78SMRBS ECT2L--ECT2L 8.64307137679426 8.64307137679426 NA NA differentially expressed differentially expressed NA NA frameshift ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_YXZPWFVB -BS_P78SMRBS RFX4--RFX4 3.68413668857824 3.68413668857824 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_YXZPWFVB -BS_P78SMRBS NEK5--AC090001.1 3.96666437838803 NA NA NA differentially expressed NA NA NA frameshift NEK5 NA AC090001.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_YXZPWFVB -BS_P78SMRBS PLEKHA8--PLEKHA8 1.21278144695327 1.21278144695327 NA NA no change no change NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_YXZPWFVB -BS_P7EY9DXG PLCE1--PIPSL/PLCE1 8.91147838265902 9.25381457483064 NA 8.91147838265902 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_H8Z52K09 -BS_P9JP6JFA KCNQ5--COX18 0.589596245877429 0.296131813395344 NA NA no change no change NA NA frameshift KCNQ5 NA COX18 NA Oncogene NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_P9JP6JFA ASCC1--CTNNA3 1.08999020279916 -1.4159588098489 NA NA no change no change NA NA frameshift ASCC1 NA CTNNA3 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_P9JP6JFA PDGFC--PRDM5 7.39710042578583 4.0440431473423 NA NA differentially expressed differentially expressed NA NA frameshift PDGFC NA PRDM5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_Y5KY6KN9 -BS_PEP9NZXN RAB6A--SRF 0.350725353087675 0.186931457963134 NA NA no change no change NA NA in-frame RAB6A NA SRF NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_7TEHW6VQ -BS_PEP9NZXN WNK3--WNK3 10.7650702377479 10.7650702377479 NA NA differentially expressed differentially expressed NA NA in-frame WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_7TEHW6VQ -BS_PEP9NZXN KIAA1549--BRAF 4.87194539131777 2.30091453046798 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_7TEHW6VQ -BS_PGHK1JRW ERC1--EPB41 2.32882263065385 1.15076329274794 NA NA differentially expressed no change NA NA in-frame ERC1 NA EPB41 NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA ARRIBA 1 PT_TV5DYHNC -BS_PGHK1JRW BCR--MIF -0.719976638204589 0.0206232868529188 NA NA no change no change NA NA frameshift BCR NA MIF NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_TV5DYHNC -BS_PGK832G2 CREB1--SPAG16 4.59447052153919 -2.33082478145622 NA NA differentially expressed differentially expressed NA NA frameshift CREB1 NA SPAG16 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_VTM2STE3 -BS_PGK832G2 DYNC1H1--B2M -0.136044935813528 0.741947760480988 NA NA no change no change NA NA frameshift DYNC1H1 NA B2M NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_VTM2STE3 -BS_PJPGVD62 ERBB4--ERBB4 0.950747273935577 0.950747273935577 NA NA no change no change NA NA frameshift ERBB4 NA ERBB4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_ZZRBX5JT -BS_PK18H7E7 CSMD3--CSMD3 4.38251643124699 4.38251643124699 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2YT37G8P -BS_PK18H7E7 GPAT4--NRG1/RNU6-663P NA -1.29443794695155 NA NA NA no change NA NA frameshift GPAT4 NA NRG1 RNU6-663P NA CosmicCensus NA NA NA ARRIBA 1 PT_2YT37G8P -BS_PK18H7E7 KIAA1549--BRAF 3.94597403296416 1.62984310108074 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_2YT37G8P -BS_PN2CE34A YAP1--FAM118B 3.58908079612563 0.966445780056633 NA NA differentially expressed no change NA NA in-frame YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_54MH6Q46 -BS_PN2CE34A ITGB5--CACNA1D 7.20194086169277 1.93627208386904 NA NA differentially expressed no change NA NA frameshift ITGB5 NA CACNA1D NA NA CosmicCensus NA NA NA ARRIBA 1 PT_54MH6Q46 -BS_PN2CE34A BACH1--QRICH1 4.71047595627917 0.779034861665355 NA NA differentially expressed no change NA NA frameshift BACH1 NA QRICH1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_54MH6Q46 -BS_PN2CE34A STAG2--OPHN1 3.92775502399476 1.26796551412057 NA NA differentially expressed no change NA NA frameshift STAG2 NA OPHN1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_54MH6Q46 -BS_PNYN0AYD ZNF236--FRG1CP/FRG1DP 6.6672891638889 NA NA NA differentially expressed NA NA NA frameshift ZNF236 NA FRG1CP FRG1DP TranscriptionFactor NA NA NA NA ARRIBA 1 PT_C2D4JXS1 -BS_PNYN0AYD ARFGEF3--EYA4 0.804054455927511 0.721551416153573 NA NA no change no change NA NA frameshift ARFGEF3 NA EYA4 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_C2D4JXS1 -BS_PNYN0AYD MNT--PRKDC 1.01532008258545 2.64294474978706 NA NA no change differentially expressed NA NA in-frame MNT NA PRKDC NA TumorSuppressorGene, TranscriptionFactor Kinase NA NA NA ARRIBA 1 PT_C2D4JXS1 -BS_PNYN0AYD AFF3--TMEM182 4.38275029496636 2.0560743008593 NA NA differentially expressed differentially expressed NA NA frameshift AFF3 NA TMEM182 NA CosmicCensus, Oncogene NA NA NA TCGAFusion ARRIBA 1 PT_C2D4JXS1 -BS_PNYN0AYD TRIM37--MSI2 0.0125731075831868 2.22431489700334 NA NA no change differentially expressed NA NA frameshift TRIM37 NA MSI2 NA Oncogene CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_C2D4JXS1 -BS_PNYN0AYD PTGIS--AL391117.1 11.0982946915767 NA NA NA differentially expressed NA NA NA frameshift PTGIS NA AL391117.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_C2D4JXS1 -BS_PNYN0AYD ERC1--PHBP17 2.53453529324617 64.7760040207123 NA NA differentially expressed differentially expressed NA NA frameshift ERC1 NA PHBP17 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_C2D4JXS1 -BS_PNYN0AYD ZNF337--WWP2 -0.54734124968373 2.54022066200063 NA NA no change differentially expressed NA NA frameshift ZNF337 NA WWP2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_C2D4JXS1 -BS_PNYN0AYD RPGRIP1L--AL009028.1/TBX22 3.55916956842931 NA NA -0.0845317414825413 differentially expressed NA NA no change frameshift RPGRIP1L NA AL009028.1 TBX22 NA NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_C2D4JXS1 -BS_PNYN0AYD SEPT7--ELMO1/NECAP1P1 0.535828116968175 -1.32993568165001 NA 4.04047353563682 no change no change NA differentially expressed frameshift SEPT7 NA ELMO1 NECAP1P1 NA Oncogene NA NA NA ARRIBA 1 PT_C2D4JXS1 -BS_PQ6QEVE8 ALK--SPDYA 9.94101182353293 -1.06033774924285 NA NA differentially expressed no change NA NA frameshift ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_RGX23JFP -BS_PQ6QEVE8 PPP1CB--ALK 2.44874556428233 9.94101182353293 NA NA differentially expressed differentially expressed NA NA in-frame PPP1CB NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RGX23JFP -BS_PQ6QEVE8 ALK--PPP1CB 9.94101182353293 2.44874556428233 NA NA differentially expressed differentially expressed NA NA frameshift ALK NA PPP1CB NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_RGX23JFP -BS_PQ6QEVE8 SPDYA--ALK -1.06033774924285 9.94101182353293 NA NA no change differentially expressed NA NA in-frame SPDYA NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RGX23JFP -BS_PQ7CQFYR BRAF--KIAA1549 1.01127763659386 3.80729225545591 NA NA no change differentially expressed NA NA in-frame BRAF NA KIAA1549 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_R0M1QBY4 -BS_PQ7CQFYR KCNH1--AL590132.1 3.81828899190024 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_R0M1QBY4 -BS_PQ7CQFYR KCNH1--KCNH1 3.81828899190024 3.81828899190024 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_R0M1QBY4 -BS_PQ7CQFYR AL590132.1--KCNH1 NA 3.81828899190024 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_R0M1QBY4 -BS_PQ7CQFYR BRAF--KIAA1549 1.01127763659386 3.80729225545591 NA NA no change differentially expressed NA NA frameshift BRAF NA KIAA1549 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_R0M1QBY4 -BS_PQ7CQFYR KIAA1549--BRAF 3.80729225545591 1.01127763659386 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_R0M1QBY4 -BS_PQ7CQFYR KCNH1--AL590132.1 3.81828899190024 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_R0M1QBY4 -BS_PS0P3QJ3 STX5--GRB2 -1.82668881106069 1.06823297586655 NA NA no change no change NA NA frameshift STX5 NA GRB2 NA NA Oncogene NA NA NA ARRIBA 1 PT_6D9C46GC -BS_PSNBFWQV EWSR1--FLI1 0.247259096066417 3.56737033843267 NA NA no change differentially expressed NA NA in-frame EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_J50NZYZF -BS_PXCPK5XS PRKN--QKI NA 2.08733469353897 NA NA NA differentially expressed NA NA frameshift PRKN NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_1B1Z7BRQ -BS_PXCPK5XS UBE3A--TJP1 1.73640528833582 1.46572226707158 NA NA no change no change NA NA frameshift UBE3A NA TJP1 NA Oncogene NA NA NA NA ARRIBA 1 PT_1B1Z7BRQ -BS_PXCPK5XS TJP1--UBE3A 1.46572226707158 1.73640528833582 NA NA no change no change NA NA in-frame TJP1 NA UBE3A NA NA Oncogene NA NA NA ARRIBA 1 PT_1B1Z7BRQ -BS_PXCPK5XS ABCA7--ZNF43 -1.63400157710299 5.16612408920312 NA NA no change differentially expressed NA NA frameshift ABCA7 NA ZNF43 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_1B1Z7BRQ -BS_PZVHMSYN CREBBP--SMG1 2.48081109851509 1.9624355002684 NA NA differentially expressed no change NA NA in-frame CREBBP NA SMG1 NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, Kinase NA NA NA ARRIBA 1 PT_0MJEAART -BS_PZVHMSYN CDH20--CDH20 -0.335371893915577 -0.335371893915577 NA NA no change no change NA NA frameshift CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0MJEAART -BS_PZVHMSYN CSMD3--CSMD3 2.7863263624543 2.7863263624543 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_0MJEAART -BS_PZVHMSYN ARHGAP35--AP2S1/ARHGAP35 1.81913614550998 -0.344018186247298 NA 1.81913614550998 no change no change NA no change frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_0MJEAART -BS_PZVHMSYN ST18--ST18 -0.0503482869113309 -0.0503482869113309 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_0MJEAART -BS_PZVHMSYN THADA--THADA 0.394332532839374 0.394332532839374 NA NA no change no change NA NA in-frame THADA NA THADA NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0MJEAART -BS_Q2T9ZRM0 SPAG9--ZNF70 0.710858342937062 7.62799745479686 NA NA no change differentially expressed NA NA frameshift SPAG9 NA ZNF70 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_J4MWGQFQ -BS_Q3TBCK4V CSMD3--CSMD3 3.93516994289062 3.93516994289062 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BK92NM09 -BS_Q3TBCK4V KIAA1549--BRAF 3.97723451106741 1.8951763354662 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_BK92NM09 -BS_Q79NP5YY KIAA1549--BRAF 3.86944591965154 2.06665860580848 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_4Z34K4XB -BS_Q9V7A95C PAX3--NCOA1 7.27268300423548 2.88133428219589 NA NA differentially expressed differentially expressed NA NA in-frame PAX3 NA NCOA1 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_1DRAVX4S -BS_Q9V7A95C DUSP6--AC078777.1/LINC02421 7.86967560595244 NA NA NA differentially expressed NA NA NA frameshift DUSP6 NA AC078777.1 LINC02421 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1DRAVX4S -BS_Q9V7A95C NCOA1--REST 2.88133428219589 6.37091328863039 NA NA differentially expressed differentially expressed NA NA frameshift NCOA1 NA REST NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_1DRAVX4S -BS_Q9V7A95C NCOA1--NOA1 2.88133428219589 0.185793201630566 NA NA differentially expressed no change NA NA frameshift NCOA1 NA NOA1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1DRAVX4S -BS_Q9V7A95C DYRK2--AC008033.1/AC008033.2 17.7343407644179 NA NA NA differentially expressed NA NA NA frameshift DYRK2 NA AC008033.1 AC008033.2 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_1DRAVX4S -BS_Q9V7A95C DYRK2--LINC02384 17.7343407644179 NA NA NA differentially expressed NA NA NA frameshift DYRK2 NA LINC02384 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_1DRAVX4S -BS_Q9V7A95C DYRK2--Metazoa_SRP/RAP1B 17.7343407644179 -4.62305681474779 NA 3.23412918468502 differentially expressed differentially expressed NA differentially expressed frameshift DYRK2 NA Metazoa_SRP RAP1B Kinase, Kinase NA NA Oncogene NA ARRIBA 1 PT_1DRAVX4S -BS_QAG1RDXN CLIP1--ROS1 0.801353254299252 5.80835045271689 NA NA no change differentially expressed NA NA in-frame CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_2WVW55DA -BS_QB7YGKN1 NRCAM--PRKCB 3.02162816514391 1.70259487776353 NA NA differentially expressed no change NA NA frameshift NRCAM NA PRKCB NA TumorSuppressorGene, Oncogene TumorSuppressorGene, CosmicCensus, Kinase NA NA NA ARRIBA 1 PT_9P7P6YAQ -BS_QB7YGKN1 PRKCB--NRCAM 1.70259487776353 3.02162816514391 NA NA no change differentially expressed NA NA in-frame PRKCB NA NRCAM NA TumorSuppressorGene, CosmicCensus, Kinase TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_9P7P6YAQ -BS_QB7YGKN1 PRKCB--NRCAM 1.70259487776353 3.02162816514391 NA NA no change differentially expressed NA NA frameshift PRKCB NA NRCAM NA TumorSuppressorGene, CosmicCensus, Kinase TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_9P7P6YAQ -BS_QB84TBA3 CAMK2D--AC097522.1/RNU6-1252P 2.95800331856013 NA NA NA differentially expressed NA NA NA frameshift CAMK2D NA AC097522.1 RNU6-1252P Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_JC4DHFJR -BS_QB84TBA3 PCDH9--FBXW7 0.285458096394338 0.631758022707921 NA NA no change no change NA NA frameshift PCDH9 NA FBXW7 NA TumorSuppressorGene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JC4DHFJR -BS_QBR4WCQ2 EWSR1--ATF1 -0.992620722535862 3.21241829929844 NA NA no change differentially expressed NA NA in-frame EWSR1 NA ATF1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_6PFFSB6D -BS_QBR4WCQ2 ATF1--EWSR1 3.21241829929844 -0.992620722535862 NA NA differentially expressed no change NA NA in-frame ATF1 NA EWSR1 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_6PFFSB6D -BS_QC3XCE6X AL590132.1--KCNH1 NA 2.68439756085587 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_GB8MNK85 -BS_QC3XCE6X KCNH1--KCNH1 2.68439756085587 2.68439756085587 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GB8MNK85 -BS_QC3XCE6X AL590132.1--KCNH1 NA 2.68439756085587 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_GB8MNK85 -BS_QC3XCE6X CSMD3--CSMD3 3.20983819105746 3.20983819105746 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_GB8MNK85 -BS_QC3XCE6X KCNH1--AL590132.1 2.68439756085587 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_GB8MNK85 -BS_QC3XCE6X KCNH1--AL590132.1 2.68439756085587 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_GB8MNK85 -BS_QC3XCE6X POU6F2--POU6F2 2.15622122175368 2.15622122175368 NA NA differentially expressed differentially expressed NA NA frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GB8MNK85 -BS_QC3XCE6X PRDM2--PRDM2 0.910201702929508 0.910201702929508 NA NA no change no change NA NA frameshift PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GB8MNK85 -BS_QC3XCE6X ERC2--ERC2 2.30030971661851 2.30030971661851 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GB8MNK85 -BS_QEYPFYHD MTSS1--MTSS1 3.97579060205475 3.97579060205475 NA NA differentially expressed differentially expressed NA NA frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_M0AP3Z15 -BS_QEYPFYHD PBRM1--CLSTN2 6.0991457324796 -0.0561521857816495 NA NA differentially expressed no change NA NA frameshift PBRM1 NA CLSTN2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M0AP3Z15 -BS_QEYPFYHD JAK2--JAK2 3.23156044514416 3.23156044514416 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_M0AP3Z15 -BS_QEYPFYHD ST18--ST18 2.56902035103332 2.56902035103332 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_M0AP3Z15 -BS_QF5VVZX5 ERC2--ERC2 3.00659668259872 3.00659668259872 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CGWPWSXM -BS_QH82PBMB KIAA1549--BRAF 3.49554969702731 2.38730875748618 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_JQ45JK94 -BS_QHS3V0GP ARHGAP35--AP2S1/ARHGAP35 3.59284327170994 0.974141006513695 NA 3.59284327170994 differentially expressed no change NA differentially expressed frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_NESAQHB1 -BS_QHS3V0GP MKLN1--CDK14 3.71276538891591 1.57558609797448 NA NA differentially expressed no change NA NA frameshift MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion ARRIBA 1 PT_NESAQHB1 -BS_QHS3V0GP CDK14--MKLN1 1.57558609797448 3.71276538891591 NA NA no change differentially expressed NA NA in-frame CDK14 NA MKLN1 NA Kinase NA NA NA NA ARRIBA 1 PT_NESAQHB1 -BS_QHS3V0GP CDK14--MKLN1 1.57558609797448 3.71276538891591 NA NA no change differentially expressed NA NA frameshift CDK14 NA MKLN1 NA Kinase NA NA NA NA ARRIBA 1 PT_NESAQHB1 -BS_QHS3V0GP CDK14--CDK14 1.57558609797448 1.57558609797448 NA NA no change no change NA NA frameshift CDK14 NA CDK14 NA Kinase Kinase NA NA NA ARRIBA 1 PT_NESAQHB1 -BS_QKT3TJVK PTPRZ1--LINC01510/MET 2.92979247075843 1.59820248352773 NA 0.575844247366767 differentially expressed no change NA no change frameshift PTPRZ1 NA LINC01510 MET NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA ARRIBA 1 PT_8VRZRZ7R -BS_QKT3TJVK OSBPL7--HNF4G -0.241799001544068 2.1788371959715 NA NA no change differentially expressed NA NA frameshift OSBPL7 NA HNF4G NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_8VRZRZ7R -BS_QKT3TJVK PDCD4--SMC3 2.44278784915046 5.12034059463742 NA NA differentially expressed differentially expressed NA NA frameshift PDCD4 NA SMC3 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_8VRZRZ7R -BS_QKT3TJVK PRKCZ--HP1BP3 -3.55655851978728 1.62970103467131 NA NA differentially expressed no change NA NA frameshift PRKCZ NA HP1BP3 NA Kinase NA NA NA NA ARRIBA 1 PT_8VRZRZ7R -BS_QNAQGAV6 RFX4--RFX4 1.52705176886828 1.52705176886828 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_XCX9W17B -BS_QNAQGAV6 CSMD3--CSMD3 0.514605750882079 0.514605750882079 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XCX9W17B -BS_QNAQGAV6 FAM135B--FAM135B 1.7580422048433 1.7580422048433 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_XCX9W17B -BS_QNAQGAV6 PRDM2--PRDM2 0.137027464268641 0.137027464268641 NA NA no change no change NA NA frameshift PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_XCX9W17B -BS_QNAQGAV6 AL590132.1--KCNH1 NA 2.69891017592312 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_XCX9W17B -BS_QNAQGAV6 KCNH1--AL590132.1 2.69891017592312 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_XCX9W17B -BS_QNAQGAV6 KCNH1--KCNH1 2.69891017592312 2.69891017592312 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XCX9W17B -BS_QNAQGAV6 ERC2--ERC2 1.83097917703789 1.83097917703789 NA NA no change no change NA NA frameshift ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XCX9W17B -BS_QNAQGAV6 AL590132.1--KCNH1 NA 2.69891017592312 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_XCX9W17B -BS_QNAQGAV6 KCNH1--AL590132.1 2.69891017592312 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_XCX9W17B -BS_QNNX91SM DLC1--TMEM64 -0.436760972938451 2.24203682239972 NA NA no change differentially expressed NA NA frameshift DLC1 NA TMEM64 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_CSKHQB16 -BS_QNNX91SM FGF12--CCDC50 2.05492713217893 4.89713897500463 NA NA differentially expressed differentially expressed NA NA in-frame FGF12 NA CCDC50 NA Oncogene NA NA NA NA ARRIBA 1 PT_CSKHQB16 -BS_QNNX91SM CCDC50--FGF12 4.89713897500463 2.05492713217893 NA NA differentially expressed differentially expressed NA NA in-frame CCDC50 NA FGF12 NA NA Oncogene NA NA NA ARRIBA 1 PT_CSKHQB16 -BS_QP6MSKRE MAML2--YAP1 5.16311107103836 3.5565149138431 NA NA differentially expressed differentially expressed NA NA in-frame MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion ARRIBA 1 PT_MKDQZ17N -BS_QP6MSKRE YAP1--MAML2 3.5565149138431 5.16311107103836 NA NA differentially expressed differentially expressed NA NA in-frame YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_MKDQZ17N -BS_QPPPGYP4 CDH10--CDH10 -1.25172681353453 -1.25172681353453 NA NA no change no change NA NA frameshift CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CZRDBM1Q -BS_QPPPGYP4 BRINP1--BRINP1 0.101550067046762 0.101550067046762 NA NA no change no change NA NA frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_CZRDBM1Q -BS_QPPPGYP4 JAK2--JAK2 1.094072843816 1.094072843816 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_CZRDBM1Q -BS_QPPPGYP4 ST18--ST18 2.98848253027166 2.98848253027166 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_CZRDBM1Q -BS_QRDT19KS PCM1--MTUS1 1.96778056135026 0.336142070865778 NA NA no change no change NA NA frameshift PCM1 NA MTUS1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_24DDXEB5 -BS_QRDT19KS SPTBN2--FYN 0.663314927897526 3.99548561021485 NA NA no change differentially expressed NA NA frameshift SPTBN2 NA FYN NA NA Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_24DDXEB5 -BS_QRDT19KS TNPO2--IER2 1.94840301442203 -0.156788713785479 NA NA no change no change NA NA in-frame TNPO2 NA IER2 NA NA Oncogene NA NA NA ARRIBA 1 PT_24DDXEB5 -BS_QRDT19KS JAK2--JAK2 1.50846115183583 1.50846115183583 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_24DDXEB5 -BS_QRNSKFMS KIAA1549--BRAF 3.79402386966635 1.85304009169995 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_B5VQ16GW -BS_QRNSKFMS ZNF507--LINC01837 3.1672037259998 NA NA NA differentially expressed NA NA NA frameshift ZNF507 NA LINC01837 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_B5VQ16GW -BS_QSTAVWGE C11orf95--RELA 1.81507422250582 2.17271059233018 NA NA no change differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_JP1FDKN9 -BS_QSTAVWGE LMNTD1--LMNTD1 8.0851042894518 8.0851042894518 NA NA differentially expressed differentially expressed NA NA frameshift LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_JP1FDKN9 -BS_QSTAVWGE LRGUK--LRGUK 13.3492980371435 13.3492980371435 NA NA differentially expressed differentially expressed NA NA in-frame LRGUK NA LRGUK NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_JP1FDKN9 -BS_QSTAVWGE RFX4--RFX4 2.42225309122851 2.42225309122851 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_JP1FDKN9 -BS_QTSXW7DA RFX4--RFX4 1.12154059469909 1.12154059469909 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ZD9AYB6F -BS_QTSXW7DA ERC2--ERC2 -0.0131371907444414 -0.0131371907444414 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZD9AYB6F -BS_QTSXW7DA ST18--ST18 0.0814788087177379 0.0814788087177379 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ZD9AYB6F -BS_QV51J756 AL590132.1--KCNH1 NA 2.42269956787958 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_CWD717Q0 -BS_QV51J756 AL590132.1--KCNH1 NA 2.42269956787958 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_CWD717Q0 -BS_QV51J756 FAM135B--FAM135B 1.40181323665606 1.40181323665606 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_CWD717Q0 -BS_QV51J756 CSMD3--CSMD3 2.34783365613732 2.34783365613732 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CWD717Q0 -BS_QV51J756 KCNH1--KCNH1 2.42269956787958 2.42269956787958 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CWD717Q0 -BS_QV51J756 KCNH1--AL590132.1 2.42269956787958 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CWD717Q0 -BS_QV51J756 KCNH1--AL590132.1 2.42269956787958 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CWD717Q0 -BS_QW60M0FE PLCE1--PIPSL/PLCE1 7.1434148743393 7.14108925175116 NA 7.1434148743393 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_7M2PGCBV -BS_QWNBZ9RJ ST18--ST18 1.80113658972867 1.80113658972867 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_00G007DM -BS_QWNBZ9RJ MYT1L--MYT1L 1.74394355409673 1.74394355409673 NA NA no change no change NA NA frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_00G007DM -BS_QWNBZ9RJ CSMD3--CSMD3 5.15821049705447 5.15821049705447 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_00G007DM -BS_QWNBZ9RJ MTSS1--MTSS1 3.40589088875528 3.40589088875528 NA NA differentially expressed differentially expressed NA NA frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_00G007DM -BS_QWNBZ9RJ BRINP1--BRINP1 -0.708675481075049 -0.708675481075049 NA NA no change no change NA NA frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_00G007DM -BS_QWTE1CWR TCF20--LINC02063 2.07729509465173 NA NA NA differentially expressed NA NA NA frameshift TCF20 NA LINC02063 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR CRK--MICU2 1.20244616310102 -2.27536707995628 NA NA no change differentially expressed NA NA in-frame CRK NA MICU2 NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR TCF20--AC025187.1/LINC02063 2.07729509465173 NA NA NA differentially expressed NA NA NA frameshift TCF20 NA AC025187.1 LINC02063 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR CTTN--PYGM -0.996282486696477 -3.20323999899065 NA NA no change differentially expressed NA NA frameshift CTTN NA PYGM NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR NETO1--DYM 1.29755580976325 2.37531674141038 NA NA no change differentially expressed NA NA in-frame NETO1 NA DYM NA NA Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR CORO1C--NSUN6 4.09510378684349 -1.76550025223457 NA NA differentially expressed no change NA NA frameshift CORO1C NA NSUN6 NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR CENPF--RD3/AC105275.1/SLC30A1 2.78552101024273 -0.347712287640732 NA NA differentially expressed no change NA NA frameshift CENPF NA RD3 AC105275.1 Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR WASF3--DNAH9 -1.93857275590648 2.13438466649242 NA NA no change differentially expressed NA NA in-frame WASF3 NA DNAH9 NA NA Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR RPAIN--MINK1 0.389136005857318 -1.16179448021536 NA NA no change no change NA NA in-frame RPAIN NA MINK1 NA NA Kinase NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR SRGAP2--KIF14 0.696588623419139 14.0965713532816 NA NA no change differentially expressed NA NA frameshift SRGAP2 NA KIF14 NA NA Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR DYM--AC091042.1/AC110597.1 2.37531674141038 NA NA NA differentially expressed NA NA NA frameshift DYM NA AC091042.1 AC110597.1 Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR KIF14--SRGAP2 14.0965713532816 0.696588623419139 NA NA differentially expressed no change NA NA in-frame KIF14 NA SRGAP2 NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR ABR--WASF3 0.214354884401455 -1.93857275590648 NA NA no change no change NA NA frameshift ABR NA WASF3 NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR RBM34--AL391645.1 -1.32255521451965 NA NA NA no change NA NA NA frameshift RBM34 NA AL391645.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR ABCD4--ZNF521/RN7SL97P -0.391502078639608 0.346252993600225 NA -0.0294627825494395 no change no change NA no change frameshift ABCD4 NA ZNF521 RN7SL97P NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR DYM--ZBTB7C 2.37531674141038 2.77928965607128 NA NA differentially expressed differentially expressed NA NA frameshift DYM NA ZBTB7C NA Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR ZC3H11A--CENPF -1.08557703258478 2.78552101024273 NA NA no change differentially expressed NA NA in-frame ZC3H11A NA CENPF NA NA Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR ZDHHC20--USP12 -0.751356792624626 -2.97493329886689 NA NA no change differentially expressed NA NA frameshift ZDHHC20 NA USP12 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR ROCK1--EXOGP1/AC022809.1 -0.564133975510864 -0.104721449762104 NA NA no change no change NA NA frameshift ROCK1 NA EXOGP1 AC022809.1 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR ZNF532--AC090771.2 2.01012800559957 NA NA NA differentially expressed NA NA NA frameshift ZNF532 NA AC090771.2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR VPS53--MIS12 0.944312107336555 -1.26916935715939 NA NA no change no change NA NA frameshift VPS53 NA MIS12 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR ZBED6--CENPF 2.24758066327826 2.78552101024273 NA NA differentially expressed differentially expressed NA NA in-frame ZBED6 NA CENPF NA TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QWTE1CWR MAPKAPK2--PTCHD3/RAB18 1.87094794566939 0.694436778548057 NA -0.688283386789638 no change no change NA no change frameshift MAPKAPK2 NA PTCHD3 RAB18 Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_QX12J6W1 TBC1D22A--ZNRF3 -0.48662965057614 0.184866184384724 NA NA no change no change NA NA frameshift TBC1D22A NA ZNRF3 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_XRQHMBHB -BS_QXKRN6CR ADAMTS9--GEMIN8/AC002524.1 -0.0693398563297132 3.28904903435923 NA NA no change differentially expressed NA NA frameshift ADAMTS9 NA GEMIN8 AC002524.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RM5S859Q -BS_QXKRN6CR C11orf95--RELA 5.3916309839366 4.50424394209314 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_RM5S859Q -BS_QXKRN6CR PFKFB4--ADAMTS9 0.352739557923718 -0.0693398563297132 NA NA no change no change NA NA frameshift PFKFB4 NA ADAMTS9 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_RM5S859Q -BS_QXKRN6CR MARK2--RPL21P41/KBTBD8 -0.521526894924951 -0.0294627825494395 NA -0.544526873004053 no change no change NA no change frameshift MARK2 NA RPL21P41 KBTBD8 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_RM5S859Q -BS_QXKRN6CR C11orf95--RELA/RN7SL309P 5.3916309839366 4.50424394209314 NA -0.127540765796411 differentially expressed differentially expressed NA no change frameshift C11orf95 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_RM5S859Q -BS_QXKRN6CR IL1RAPL1--ADAMTS9 6.92886693908218 -0.0693398563297132 NA NA differentially expressed no change NA NA in-frame IL1RAPL1 NA ADAMTS9 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_RM5S859Q -BS_QYPHA40N MSI2--RNF213 2.81506472364979 3.40025014431807 NA NA differentially expressed differentially expressed NA NA frameshift MSI2 NA RNF213 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_3AWKWXEV -BS_QZFEB94Q PTPN11--TXNRD1 0.165918309438402 1.19184632488631 NA NA no change no change NA NA frameshift PTPN11 NA TXNRD1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_25Z2NX27 -BS_QZFEB94Q GNB1--WNK1 -0.291668505135275 0.135793674491889 NA NA no change no change NA NA in-frame GNB1 NA WNK1 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_25Z2NX27 -BS_R13X6TMW CSMD3--CSMD3 2.60191294920665 2.60191294920665 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_J0SZ1SX5 -BS_R244Z0WX KIAA1549--BRAF 2.36551031739424 0.923715122078912 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_JPWVCTAJ -BS_R244Z0WX COL11A1--COL11A1 1.9681641741162 1.9681641741162 NA NA no change no change NA NA in-frame COL11A1 NA COL11A1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_JPWVCTAJ -BS_R439VVPK ZFAT--WRN 0.955849442577341 2.80737464776234 NA NA no change differentially expressed NA NA in-frame ZFAT NA WRN NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_26V72ZXB -BS_R439VVPK TACC1--AF279873.3/AC087855.2 -1.04161637818067 NA NA NA no change NA NA NA frameshift TACC1 NA AF279873.3 AC087855.2 Oncogene NA NA NA NA ARRIBA 1 PT_26V72ZXB -BS_R439VVPK WRN--AC016074.1/RNU6-442P 2.80737464776234 NA NA NA differentially expressed NA NA NA frameshift WRN NA AC016074.1 RNU6-442P CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_26V72ZXB -BS_R439VVPK PRKDC--DEFA1/DEFT1P 1.99004825215972 -0.453327460121488 NA -0.101877109100804 no change no change NA no change frameshift PRKDC NA DEFA1 DEFT1P Kinase NA NA NA NA ARRIBA 1 PT_26V72ZXB -BS_R4Y180DM FOS--ERRFI1 1.53564182812438 -1.24077640886212 NA NA no change no change NA NA frameshift FOS NA ERRFI1 NA Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_NBSRQAMS -BS_R4Y180DM EWSR1--FLI1 -0.560904257193176 2.14860178415005 NA NA no change differentially expressed NA NA in-frame EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_NBSRQAMS -BS_R5SNFB5B NBEA--AC023310.4/NBEAP1 0.134361003293948 NA NA 2.7037089163661 no change NA NA differentially expressed frameshift NBEA NA AC023310.4 NBEAP1 CosmicCensus NA NA Oncogene NA ARRIBA 1 PT_C2D4JXS1 -BS_R5SNFB5B TRIM37--MSI2 -0.632725125052435 1.26006959439748 NA NA no change no change NA NA frameshift TRIM37 NA MSI2 NA Oncogene CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_C2D4JXS1 -BS_R5SNFB5B MNT--PRKDC 0.233226868240074 2.85873565111628 NA NA no change differentially expressed NA NA frameshift MNT NA PRKDC NA TumorSuppressorGene, TranscriptionFactor Kinase NA NA NA ARRIBA 1 PT_C2D4JXS1 -BS_R7HZCZ8B CSMD3--CSMD3 1.69085096245822 1.69085096245822 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_0CRPE7YP -BS_R7HZCZ8B AL590132.1--KCNH1 NA 1.36988329808555 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_0CRPE7YP -BS_R7HZCZ8B DNAH9--DNAH9 1.01305522805456 1.01305522805456 NA NA no change no change NA NA frameshift DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0CRPE7YP -BS_R7HZCZ8B KCNH1--KCNH1 1.36988329808555 1.36988329808555 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0CRPE7YP -BS_R7HZCZ8B ERC2--ERC2 0.64547643900261 0.64547643900261 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0CRPE7YP -BS_R7HZCZ8B AL590132.1--KCNH1 NA 1.36988329808555 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_0CRPE7YP -BS_R7HZCZ8B ROBO2--ROBO2 1.04046949505913 1.04046949505913 NA NA no change no change NA NA frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_0CRPE7YP -BS_R7HZCZ8B KCNH1--AL590132.1 1.36988329808555 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_0CRPE7YP -BS_R7HZCZ8B KCNH1--AL590132.1 1.36988329808555 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_0CRPE7YP -BS_R7HZCZ8B MYT1L--MYT1L 0.140746793901079 0.140746793901079 NA NA no change no change NA NA frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_0CRPE7YP -BS_R7NTZR4C IGF1R--TTC23 9.11041642060958 13.3792172996008 NA NA differentially expressed differentially expressed NA NA in-frame IGF1R NA TTC23 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_0MXPTTM3 -BS_R7NTZR4C IGF1R--ADAMTS17 9.11041642060958 14.6297356965046 NA NA differentially expressed differentially expressed NA NA frameshift IGF1R NA ADAMTS17 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_0MXPTTM3 -BS_R7NTZR4C IGF1R--TTC23 9.11041642060958 13.3792172996008 NA NA differentially expressed differentially expressed NA NA frameshift IGF1R NA TTC23 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_0MXPTTM3 -BS_R7NTZR4C DDX3X--RIOK3 1.46583401373688 1.39526496780677 NA NA no change no change NA NA frameshift DDX3X NA RIOK3 NA TumorSuppressorGene, CosmicCensus Kinase NA NA NA ARRIBA 1 PT_0MXPTTM3 -BS_R7NTZR4C MEF2A--CERS3 6.07453890596805 0.952889419954518 NA NA differentially expressed no change NA NA frameshift MEF2A NA CERS3 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_0MXPTTM3 -BS_R7NTZR4C IGF1R--MEF2A 9.11041642060958 6.07453890596805 NA NA differentially expressed differentially expressed NA NA in-frame IGF1R NA MEF2A NA Kinase, Oncogene, Kinase TranscriptionFactor NA NA NA ARRIBA 1 PT_0MXPTTM3 -BS_R7NTZR4C FBXW7--DCLK2 0.173669351463408 3.32919709530815 NA NA no change differentially expressed NA NA frameshift FBXW7 NA DCLK2 NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, Kinase NA NA NA ARRIBA 1 PT_0MXPTTM3 -BS_R7NTZR4C MEF2A--AC087633.2 6.07453890596805 NA NA NA differentially expressed NA NA NA frameshift MEF2A NA AC087633.2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_0MXPTTM3 -BS_R7NTZR4C ZNF131--PARP8 1.81029986842993 1.21992882195238 NA NA no change no change NA NA frameshift ZNF131 NA PARP8 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_0MXPTTM3 -BS_R7NTZR4C FBXW7--DCLK2 0.173669351463408 3.32919709530815 NA NA no change differentially expressed NA NA in-frame FBXW7 NA DCLK2 NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, Kinase NA NA NA ARRIBA 1 PT_0MXPTTM3 -BS_R9B92M75 MARCH1--DCLK2 3.01457754296407 2.00500433123795 NA NA differentially expressed differentially expressed NA NA in-frame MARCH1 NA DCLK2 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_1YQH5NSH -BS_R9B92M75 DAP--CTNND2 0.923950076251302 1.1100457408566 NA NA no change no change NA NA in-frame DAP NA CTNND2 NA NA CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_1YQH5NSH -BS_R9B92M75 NEDD4L--MBP -0.698364074352027 0.758761483861204 NA NA no change no change NA NA in-frame NEDD4L NA MBP NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1YQH5NSH -BS_R9B92M75 CTNND2--DAP 1.1100457408566 0.923950076251302 NA NA no change no change NA NA frameshift CTNND2 NA DAP NA CosmicCensus, Oncogene NA NA NA TCGAFusion ARRIBA 1 PT_1YQH5NSH -BS_RB2S0KDF NCAPG2--CDK14 0.0103950713202447 -0.0640737049510798 NA NA no change no change NA NA in-frame NCAPG2 NA CDK14 NA NA Kinase NA NA NA ARRIBA 1 PT_A9YAZJNN -BS_RB2S0KDF CREB3L2--CDK14 8.92897605051636 -0.0640737049510798 NA NA differentially expressed no change NA NA frameshift CREB3L2 NA CDK14 NA CosmicCensus, Oncogene, TranscriptionFactor Kinase NA NA NA ARRIBA 1 PT_A9YAZJNN -BS_RB2S0KDF SRPK2--HYAL4 -0.508038256361888 91.37447920452 NA NA no change differentially expressed NA NA frameshift SRPK2 NA HYAL4 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_A9YAZJNN -BS_RB2S0KDF RAB31--SMCHD1 0.0368847284034723 1.36682892247342 NA NA no change no change NA NA frameshift RAB31 NA SMCHD1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_A9YAZJNN -BS_RB2S0KDF WDR86--AC015983.1/FEZF1 6.68397988037547 NA NA 0.351166278683329 differentially expressed NA NA no change frameshift WDR86 NA AC015983.1 FEZF1 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_A9YAZJNN -BS_RB2S0KDF CDK14--TMBIM7P -0.0640737049510798 0.00938885503475301 NA NA no change no change NA NA frameshift CDK14 NA TMBIM7P NA Kinase NA NA NA NA ARRIBA 1 PT_A9YAZJNN -BS_RB2S0KDF NCOR2--SCARB1 3.25330923654286 0.217222840007962 NA NA differentially expressed no change NA NA in-frame NCOR2 NA SCARB1 NA CosmicCensus, Oncogene Oncogene NA NA TCGAFusion ARRIBA 1 PT_A9YAZJNN -BS_RB2S0KDF DGKB--Y_RNA/AC093813.1 -0.169164044802887 9.20029628525851 NA NA no change differentially expressed NA NA frameshift DGKB NA Y_RNA AC093813.1 Kinase NA NA NA NA ARRIBA 1 PT_A9YAZJNN -BS_RB2S0KDF SRPK2--DPY19L2P2 -0.508038256361888 3.37188034858987 NA NA no change differentially expressed NA NA frameshift SRPK2 NA DPY19L2P2 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_A9YAZJNN -BS_RCC8BXVE ST18--ST18 2.38810125126492 2.38810125126492 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_WWZ2Q14R -BS_RCCN63K6 UBIAD1--LINC01358 4.00178122371545 1.53153240405155 NA NA differentially expressed no change NA NA frameshift UBIAD1 NA LINC01358 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RCCN63K6 SULF2--ZHX3 1.73633772418732 3.0231953821181 NA NA no change differentially expressed NA NA frameshift SULF2 NA ZHX3 NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RCCN63K6 MID1--CC2D2A 1.68915482684479 3.20912931406333 NA NA no change differentially expressed NA NA in-frame MID1 NA CC2D2A NA Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RCCN63K6 PSMB2--PATJ -0.191721888574716 NA NA NA no change NA NA NA in-frame PSMB2 NA PATJ NA NA Oncogene NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RCCN63K6 STIM1--DLG1 0.754992738946413 0.26240347895349 NA NA no change no change NA NA in-frame STIM1 NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RCCN63K6 ARHGAP20--OR4A6P/TRIM48 0.770141851109822 -0.0467500233313125 NA 15.7985951567984 no change no change NA differentially expressed frameshift ARHGAP20 NA OR4A6P TRIM48 Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RCCN63K6 UBIAD1--LINC01135 4.00178122371545 1.00749334328474 NA NA differentially expressed no change NA NA frameshift UBIAD1 NA LINC01135 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RCCN63K6 ECE1--TNFRSF8 2.43726734542774 3.96530702099717 NA NA differentially expressed differentially expressed NA NA in-frame ECE1 NA TNFRSF8 NA NA Oncogene NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RCCN63K6 ECE1--TNFRSF8 2.43726734542774 3.96530702099717 NA NA differentially expressed differentially expressed NA NA frameshift ECE1 NA TNFRSF8 NA NA Oncogene NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RCCN63K6 ZNF362--MYSM1/AL136985.3 2.48902822497629 -0.149781621030764 NA NA differentially expressed no change NA NA frameshift ZNF362 NA MYSM1 AL136985.3 TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RCCN63K6 MID1--C1QTNF7 1.68915482684479 4.57541828907599 NA NA no change differentially expressed NA NA frameshift MID1 NA C1QTNF7 NA Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RCCN63K6 HP1BP3--SCMH1 2.53277383611544 0.00158872217887159 NA NA differentially expressed no change NA NA frameshift HP1BP3 NA SCMH1 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RCCN63K6 AXIN1--RBFOX1 0.395708623081245 -1.90987040761568 NA NA no change no change NA NA frameshift AXIN1 NA RBFOX1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RCCN63K6 ATF7IP--LINC02484/AC093689.1 6.48188579564502 NA NA NA differentially expressed NA NA NA frameshift ATF7IP NA LINC02484 AC093689.1 Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RCCN63K6 LRRC59--CNTNAP2 3.0292989324592 -0.472440854064417 NA NA differentially expressed no change NA NA frameshift LRRC59 NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RCCN63K6 SULF2--ZHX3 1.73633772418732 3.0231953821181 NA NA no change differentially expressed NA NA in-frame SULF2 NA ZHX3 NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RCCN63K6 DAB2IP--VAV1 0.32246773083446 2.90692066131066 NA NA no change differentially expressed NA NA frameshift DAB2IP NA VAV1 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_RPC00TAJ -BS_RD4D5F9F ST18--ST18 2.40846455858466 2.40846455858466 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_NTEKMKTX -BS_RGSMX7QD KIAA1549--BRAF 4.16919994063811 2.59727891288935 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_4EDBZRM2 -BS_RHD7XPNP ADAMTS18--ADAMTS18 2.18224872026377 2.18224872026377 NA NA differentially expressed differentially expressed NA NA frameshift ADAMTS18 NA ADAMTS18 NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_JN3EN2HR -BS_RHD7XPNP PRKCE--LINC01121 0.794432253606178 -0.290804430000356 NA NA no change no change NA NA frameshift PRKCE NA LINC01121 NA TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_JN3EN2HR -BS_RHD7XPNP THADA--THADA 1.95123105613062 1.95123105613062 NA NA no change no change NA NA in-frame THADA NA THADA NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_JN3EN2HR -BS_RQSKD7PN FGF2--AP003715.1/AP002428.1 1.75922802413276 NA NA NA no change NA NA NA frameshift FGF2 NA AP003715.1 AP002428.1 Oncogene NA NA NA NA ARRIBA 1 PT_2E552BAR -BS_RQSKD7PN CDK12--ABCA6 2.24834163545594 4.26008600022651 NA NA differentially expressed differentially expressed NA NA frameshift CDK12 NA ABCA6 NA CosmicCensus, Kinase NA NA NA NA ARRIBA 1 PT_2E552BAR -BS_RRAEQZ97 RTN4--FBXO36 -1.55157572210413 1.10144751492535 NA NA no change no change NA NA frameshift RTN4 NA FBXO36 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_FXPJM0MW -BS_RRAEQZ97 MTA3--KIDINS220 0.179476922877206 1.50804429725671 NA NA no change no change NA NA frameshift MTA3 NA KIDINS220 NA Oncogene NA NA NA NA ARRIBA 1 PT_FXPJM0MW -BS_RRAEQZ97 CNNM4--MIR3681HG 0.0157443121175889 NA NA NA no change NA NA NA frameshift CNNM4 NA MIR3681HG NA Oncogene NA NA NA NA ARRIBA 1 PT_FXPJM0MW -BS_RRAEQZ97 AGFG1--ASXL2 0.909756460567779 7.13284054132409 NA NA no change differentially expressed NA NA frameshift AGFG1 NA ASXL2 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_FXPJM0MW -BS_RRAEQZ97 FBXO11--Y_RNA/FMNL2 0.308979321372668 9.75616860301682 NA -0.761305715776389 no change differentially expressed NA no change frameshift FBXO11 NA Y_RNA FMNL2 CosmicCensus NA NA NA NA ARRIBA 1 PT_FXPJM0MW -BS_RRAEQZ97 DCTN1--ALK -1.12737072329121 3.47344655536017 NA NA no change differentially expressed NA NA in-frame DCTN1 NA ALK NA CosmicCensus Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_FXPJM0MW -BS_RRAEQZ97 BCL2L11--AC107079.1/AC112715.1 4.82557818094537 -0.276235092835016 NA NA differentially expressed no change NA NA frameshift BCL2L11 NA AC107079.1 AC112715.1 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_FXPJM0MW -BS_RRAEQZ97 ZEB2--PPM1G 1.74506347236632 1.08361155140069 NA NA no change no change NA NA frameshift ZEB2 NA PPM1G NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_FXPJM0MW -BS_RRAEQZ97 RFTN2--TCF7L1 2.03372593702581 0.151957087121097 NA NA differentially expressed no change NA NA frameshift RFTN2 NA TCF7L1 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_FXPJM0MW -BS_RRAEQZ97 ASXL2--SPHKAP/AC074019.1 7.13284054132409 0.644300776000902 NA NA differentially expressed no change NA NA frameshift ASXL2 NA SPHKAP AC074019.1 CosmicCensus NA NA NA NA ARRIBA 1 PT_FXPJM0MW -BS_RRAEQZ97 BIN1--NBAS -1.58473832527318 -0.276384285583669 NA NA no change no change NA NA frameshift BIN1 NA NBAS NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_FXPJM0MW -BS_RRAEQZ97 MAP4K4--PTCD3 0.278075356336498 0.914982977142445 NA NA no change no change NA NA in-frame MAP4K4 NA PTCD3 NA Kinase NA NA NA NA ARRIBA 1 PT_FXPJM0MW -BS_RRAEQZ97 MAP4K4--PTCD3 0.278075356336498 0.914982977142445 NA NA no change no change NA NA frameshift MAP4K4 NA PTCD3 NA Kinase NA NA NA NA ARRIBA 1 PT_FXPJM0MW -BS_RSRPX3S8 RANBP2--LRRC49 1.37021259645773 0.108415046070821 NA NA no change no change NA NA frameshift RANBP2 NA LRRC49 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_GR8P8NY5 -BS_RSRPX3S8 DDX1--AC008164.1/AC008069.1 -0.94037686351241 NA NA -0.637085305131329 no change NA NA no change frameshift DDX1 NA AC008164.1 AC008069.1 Oncogene NA NA NA NA ARRIBA 1 PT_GR8P8NY5 -BS_RSRPX3S8 NTRK3--NTRK3 3.19446272269547 3.19446272269547 NA NA differentially expressed differentially expressed NA NA frameshift NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_GR8P8NY5 -BS_RVSEDNJ4 KIAA1549--BRAF 5.37817634059716 2.95900585235885 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_HGHV85PZ -BS_RWJZFTP9 KIAA1549--BRAF 5.54365565136759 1.46355824961763 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_S0PBN4M7 -BS_RWJZFTP9 PRKAR1A--PRKCA 1.8749207474269 2.91990053742385 NA NA no change differentially expressed NA NA in-frame PRKAR1A NA PRKCA NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase NA NA NA ARRIBA 1 PT_S0PBN4M7 -BS_RWJZFTP9 GNPTAB--SPTAN1 2.49245373430586 -0.0238685449508238 NA NA differentially expressed no change NA NA frameshift GNPTAB NA SPTAN1 NA NA Oncogene NA NA NA ARRIBA 1 PT_S0PBN4M7 -BS_RX1YTZ7F REV3L--FYN 0.883500472848205 2.78155591474725 NA NA no change differentially expressed NA NA frameshift REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_4XB3YTJM -BS_RX1YTZ7F HELZ2--CDH4 2.79409875843097 0.284673954600277 NA NA differentially expressed no change NA NA in-frame HELZ2 NA CDH4 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_4XB3YTJM -BS_RX1YTZ7F REV3L--FYN 0.883500472848205 2.78155591474725 NA NA no change differentially expressed NA NA in-frame REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_4XB3YTJM -BS_RXN5T5YT ALDOA--APC2 0.72936134360482 3.2728876310085 NA NA no change differentially expressed NA NA frameshift ALDOA NA APC2 NA NA Oncogene NA NA NA ARRIBA 1 PT_PR4YBBH3 -BS_RXN5T5YT PDGFRA--LNX1 5.96554261759033 2.40365154214051 NA NA differentially expressed differentially expressed NA NA frameshift PDGFRA NA LNX1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_PR4YBBH3 -BS_S0175QKX CUBN--CUBN 2.49211952265106 2.49211952265106 NA NA differentially expressed differentially expressed NA NA frameshift CUBN NA CUBN NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0NY38X3W -BS_S1KK7XRH MCM9--MCM9 3.33536469072209 3.33536469072209 NA NA differentially expressed differentially expressed NA NA in-frame MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_YJBPEF4V -BS_S1KK7XRH KIAA1549--BRAF 3.56517432758634 1.70563401821636 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_YJBPEF4V -BS_S1M423AB PAPPA2--PAPPA2 27.4104640808702 27.4104640808702 NA NA differentially expressed differentially expressed NA NA frameshift PAPPA2 NA PAPPA2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BRTVGGRK -BS_S1M423AB ST18--ST18 2.99425452312708 2.99425452312708 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_BRTVGGRK -BS_S2TA8R29 TRIM24--ROS1 1.50175017288153 3.0075970163929 NA NA no change differentially expressed NA NA in-frame TRIM24 NA ROS1 NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_4A2H0KNR -BS_S458NMKH NTRK2--AFAP1 0.841861413534496 5.57429126570269 NA NA no change differentially expressed NA NA frameshift NTRK2 NA AFAP1 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_S2SQJVGK -BS_S458NMKH AFAP1--NTRK2 5.57429126570269 0.841861413534496 NA NA differentially expressed no change NA NA in-frame AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_S2SQJVGK -BS_S458NMKH AFAP1--NTRK2 5.57429126570269 0.841861413534496 NA NA differentially expressed no change NA NA frameshift AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_S2SQJVGK -BS_S458NMKH NTRK2--AFAP1 0.841861413534496 5.57429126570269 NA NA no change differentially expressed NA NA in-frame NTRK2 NA AFAP1 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_S2SQJVGK -BS_S4V9E1XJ KIAA1549--BRAF 3.5903817502984 1.93296653308728 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_Y572BRC1 -BS_S4V9E1XJ KIAA1549--BRAF 3.5903817502984 1.93296653308728 NA NA differentially expressed no change NA NA frameshift KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_Y572BRC1 -BS_S50KQEXV KIAA1549--BRAF 4.70129436123432 2.06775558953679 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_MPRBGGEJ -BS_S5P8VTN5 CTDP1--SALL3/ATP9B 1.42883598855421 3.42455365039177 NA 0.530837620110541 no change differentially expressed NA no change frameshift CTDP1 NA SALL3 ATP9B NA TranscriptionFactor NA NA NA ARRIBA 1 PT_858H7ABM -BS_S5P8VTN5 MACF1--TTYH1 1.19768331723293 -0.452331457044392 NA NA no change no change NA NA frameshift MACF1 NA TTYH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_858H7ABM -BS_S69QZAJR CDH10--CDH10 -1.01430164516955 -1.01430164516955 NA NA no change no change NA NA frameshift CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_5JA1N2H4 -BS_S69QZAJR FAM135B--FAM135B 0.836854728993941 0.836854728993941 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_5JA1N2H4 -BS_S69QZAJR ERC2--ERC2 0.542497788333405 0.542497788333405 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_5JA1N2H4 -BS_S69QZAJR FAT2--AGAP3 1.62735448535151 -0.420832303599566 NA NA no change no change NA NA frameshift FAT2 NA AGAP3 NA Oncogene NA NA NA NA ARRIBA 1 PT_5JA1N2H4 -BS_S6NJRR5W RFX4--RFX4 2.20017713562991 2.20017713562991 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VTF65Y63 -BS_S6Q7NKA3 AKAP13--THADA 2.02402216077587 2.78943937854425 NA NA differentially expressed differentially expressed NA NA frameshift AKAP13 NA THADA NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_S6Q7NKA3 CLSTN2--PCDH9 2.27186888202309 -3.5569246572954 NA NA differentially expressed differentially expressed NA NA in-frame CLSTN2 NA PCDH9 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_S6Q7NKA3 THADA--AL445687.2/RNU6-716P 2.78943937854425 NA NA NA differentially expressed NA NA NA frameshift THADA NA AL445687.2 RNU6-716P Oncogene NA NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_S6Q7NKA3 ZNF136--ZNF675 4.53982792289252 3.87317389458029 NA NA differentially expressed differentially expressed NA NA frameshift ZNF136 NA ZNF675 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_S6Q7NKA3 ZMYND8--AC009720.1 0.362083440055714 NA NA NA no change NA NA NA frameshift ZMYND8 NA AC009720.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_S6Q7NKA3 EIF2AK4--GLCE -1.24516272317641 1.72912749151021 NA NA no change no change NA NA frameshift EIF2AK4 NA GLCE NA Kinase NA NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_S6Q7NKA3 MED15--MYO18B -0.0284324719359973 8.48364524436338 NA NA no change differentially expressed NA NA frameshift MED15 NA MYO18B NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_S6Q7NKA3 NPAS3--TTLL11 -1.29578922847299 -0.714166307825918 NA NA no change no change NA NA in-frame NPAS3 NA TTLL11 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_S6Q7NKA3 ASPH--SIAH1 -0.235385032554014 3.48329318434059 NA NA no change differentially expressed NA NA in-frame ASPH NA SIAH1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_S6Q7NKA3 ZNF136--AC011493.1 4.53982792289252 NA NA NA differentially expressed NA NA NA frameshift ZNF136 NA AC011493.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_S6S7SK3P TCF4--RPL17P45/KC6 4.10319235869528 -0.0294627825494395 NA -0.550632402877963 differentially expressed no change NA no change frameshift TCF4 NA RPL17P45 KC6 TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_S6S7SK3P PKN2--BLNK 3.31942978745409 1.42950815474321 NA NA differentially expressed no change NA NA frameshift PKN2 NA BLNK NA Kinase, Kinase TumorSuppressorGene NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_S6S7SK3P STAG1--SERF1AP1/STMN1P2 3.38288372100489 NA NA -0.0581769584730617 differentially expressed NA NA no change frameshift STAG1 NA SERF1AP1 STMN1P2 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_S6S7SK3P SNAPC3--ELF5 2.23366081709083 7.84388952719729 NA NA differentially expressed differentially expressed NA NA frameshift SNAPC3 NA ELF5 NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_S6S7SK3P PKN2--BLNK 3.31942978745409 1.42950815474321 NA NA differentially expressed no change NA NA in-frame PKN2 NA BLNK NA Kinase, Kinase TumorSuppressorGene NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_S6S7SK3P BMPR2--FEV 2.68131652956648 -0.504897979070045 NA NA differentially expressed no change NA NA in-frame BMPR2 NA FEV NA Kinase, TumorSuppressorGene, Kinase CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_S6S7SK3P HOOK3--HOOK3 2.96230817990614 2.96230817990614 NA NA differentially expressed differentially expressed NA NA frameshift HOOK3 NA HOOK3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_S6S7SK3P POLQ--IFT57 3.17568839933342 2.97559147543245 NA NA differentially expressed differentially expressed NA NA frameshift POLQ NA IFT57 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_37B5JRP1 -BS_S71RJ8DH NF2--TTC28 -2.36744887126932 10.504474473101 NA NA differentially expressed differentially expressed NA NA frameshift NF2 NA TTC28 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_E6FTW238 -BS_S7CZY2CH PLCE1--PIPSL/PLCE1 5.85726900005445 5.82495338082956 NA 5.85726900005445 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_BXXZE0CQ -BS_SAA624A4 RFX4--RFX4 0.150644704040934 0.150644704040934 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_EG7PH32E -BS_SAA624A4 ERBB4--ERBB4 -1.07231535774669 -1.07231535774669 NA NA no change no change NA NA frameshift ERBB4 NA ERBB4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_EG7PH32E -BS_SAA624A4 CSMD3--CSMD3 -0.117536584848106 -0.117536584848106 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_EG7PH32E -BS_SBFNFZ8B ERC2--ERC2 3.30946793305326 3.30946793305326 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_1EB5KHZX -BS_SBFNFZ8B CSMD3--CSMD3 2.10757416730666 2.10757416730666 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_1EB5KHZX -BS_SD8YBRBR FKBP4--ERC1 2.85580851665461 5.39227058392096 NA NA differentially expressed differentially expressed NA NA frameshift FKBP4 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_TPDB1WC8 -BS_SD8YBRBR FKBP4--ERC1 2.85580851665461 5.39227058392096 NA NA differentially expressed differentially expressed NA NA in-frame FKBP4 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_TPDB1WC8 -BS_SD8YBRBR LRIG3--SOX5 13.833916679484 10.764819814996 NA NA differentially expressed differentially expressed NA NA in-frame LRIG3 NA SOX5 NA TumorSuppressorGene, CosmicCensus Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_TPDB1WC8 -BS_SD8YBRBR GTF3C5--VAV2/LINC00094 -0.62901660183438 2.28083095987134 NA -1.06900572727553 no change differentially expressed NA no change frameshift GTF3C5 NA VAV2 LINC00094 NA Oncogene NA NA NA ARRIBA 1 PT_TPDB1WC8 -BS_SD8YBRBR NLK--MREGP1/AC024940.5 -1.47213808751609 NA NA NA no change NA NA NA frameshift NLK NA MREGP1 AC024940.5 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_TPDB1WC8 -BS_SDA4RMMG KIAA1549--BRAF 3.93336829838858 1.70171325849099 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_EW604JB3 -BS_SDA4RMMG CSMD3--CSMD3 2.66324804443703 2.66324804443703 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_EW604JB3 -BS_SDA4RMMG RFX4--RFX4 2.80561563290321 2.80561563290321 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_EW604JB3 -BS_SDA4RMMG PAPPA2--PAPPA2 4.13104799735119 4.13104799735119 NA NA differentially expressed differentially expressed NA NA frameshift PAPPA2 NA PAPPA2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_EW604JB3 -BS_SDZY6RZ3 KIAA1549--BRAF 4.52173025979985 2.3994959866819 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_5GQ76YZJ -BS_SFKZSJN1 MTSS1--MTSS1 1.49117024804738 1.49117024804738 NA NA no change no change NA NA frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_409Y4N1N -BS_SFKZSJN1 ERC2--ERC2 0.501977966877605 0.501977966877605 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_409Y4N1N -BS_SFKZSJN1 CYB5R4--CYB5R4 1.2338580987085 1.2338580987085 NA NA no change no change NA NA frameshift CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_409Y4N1N -BS_SFKZSJN1 ST18--ST18 1.47659314458645 1.47659314458645 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_409Y4N1N -BS_SFKZSJN1 CDH20--CDH20 1.98886096549727 1.98886096549727 NA NA no change no change NA NA frameshift CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_409Y4N1N -BS_SFKZSJN1 MYT1L--MYT1L 0.510976675285703 0.510976675285703 NA NA no change no change NA NA frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_409Y4N1N -BS_SFKZSJN1 RFX4--RFX4 2.04158684177372 2.04158684177372 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_409Y4N1N -BS_SFKZSJN1 LMNTD1--LMNTD1 5.36117149183392 5.36117149183392 NA NA differentially expressed differentially expressed NA NA frameshift LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_409Y4N1N -BS_SFKZSJN1 CSMD3--CSMD3 1.04161405775424 1.04161405775424 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_409Y4N1N -BS_SFRQXM76 SACM1L--ROBO1 -1.33894347708631 1.23279068310831 NA NA no change no change NA NA frameshift SACM1L NA ROBO1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_DPVW4M1W -BS_SFRQXM76 SERINC3--OVOL2 -0.257517980795976 6.34844549443832 NA NA no change differentially expressed NA NA frameshift SERINC3 NA OVOL2 NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_DPVW4M1W -BS_SHMC4902 KIAA1549--BRAF 5.0846577987738 1.87481695212006 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_TPSMT960 -BS_SKGJ5SY9 HACE1--BVES 1.3413402302831 3.32994660905189 NA NA no change differentially expressed NA NA in-frame HACE1 NA BVES NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_D1WJ3BJX -BS_SKGJ5SY9 HACE1--BVES 1.3413402302831 3.32994660905189 NA NA no change differentially expressed NA NA frameshift HACE1 NA BVES NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_D1WJ3BJX -BS_SM8VQFPD ERC2--ERC2 2.90426967780508 2.90426967780508 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_5KP2E0DS -BS_SNVM7CZT DCLK2--CDH11 4.04919824847623 3.53901917537939 NA NA differentially expressed differentially expressed NA NA frameshift DCLK2 NA CDH11 NA Kinase, Kinase TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_H2HT2WQX -BS_SQX5E15Z PLCE1--PIPSL/PLCE1 4.74766594394271 5.64043299956541 NA 4.74766594394271 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_1N6ATKJS -BS_SXCZ3CXN NRXN2--BUD13 0.644307285950258 0.893512088936526 NA NA no change no change NA NA frameshift NRXN2 NA BUD13 NA Oncogene NA NA NA NA ARRIBA 1 PT_CMB6TASJ -BS_SXCZ3CXN NRXN2--AP000770.1/BUD13 0.644307285950258 -0.155102130284522 NA 0.893512088936526 no change no change NA no change frameshift NRXN2 NA AP000770.1 BUD13 Oncogene NA NA NA NA ARRIBA 1 PT_CMB6TASJ -BS_SXCZ3CXN C11orf95--LRP5 4.62031746532604 4.8534222559129 NA NA differentially expressed differentially expressed NA NA frameshift C11orf95 NA LRP5 NA NA Oncogene NA NA NA ARRIBA 1 PT_CMB6TASJ -BS_SXCZ3CXN RFX4--RFX4 2.39937943656192 2.39937943656192 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_CMB6TASJ -BS_SXCZ3CXN PHF21A--DISC1FP1 0.377624783966145 -0.367973037106405 NA NA no change no change NA NA frameshift PHF21A NA DISC1FP1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_CMB6TASJ -BS_SXCZ3CXN PLCE1--PIPSL/PLCE1 6.95097493441973 4.17926294110296 NA 6.95097493441973 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_CMB6TASJ -BS_SXCZ3CXN C11orf95--RELA 4.62031746532604 5.30797066638922 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_CMB6TASJ -BS_SXRS2P6T KIAA1549--BRAF 3.70959330293431 1.55679858823304 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_7YGZ526E -BS_SXRS2P6T AC104836.1--TGFBR3 NA 3.4412276777406 NA NA NA differentially expressed NA NA frameshift AC104836.1 NA TGFBR3 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_7YGZ526E -BS_SXRS2P6T TGFBR3--SETSIP 3.4412276777406 12.9953082376413 NA NA differentially expressed differentially expressed NA NA frameshift TGFBR3 NA SETSIP NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_7YGZ526E -BS_SXRS2P6T TGFBR3--LPCAT2BP 3.4412276777406 -0.101474974285067 NA NA differentially expressed no change NA NA frameshift TGFBR3 NA LPCAT2BP NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_7YGZ526E -BS_SXRS2P6T BTBD8--TGFBR3 3.24914210750381 3.4412276777406 NA NA differentially expressed differentially expressed NA NA frameshift BTBD8 NA TGFBR3 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_7YGZ526E -BS_T0RKFEKR KIAA1549--BRAF 2.77733834999502 1.56938493525077 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_AYVKQZRB -BS_T0RKFEKR KCNH1--KCNH1 1.00175338794987 1.00175338794987 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AYVKQZRB -BS_T1DVKKJB AGPAT3--CD44 3.23047148581931 4.34435898188052 NA NA differentially expressed differentially expressed NA NA frameshift AGPAT3 NA CD44 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_JP1FDKN9 -BS_T1DVKKJB C11orf95--RELA 6.48658765188245 6.13886450164672 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_JP1FDKN9 -BS_T1DVKKJB PLCE1--PIPSL/PLCE1 7.33995118494141 2.89864088018587 NA 7.33995118494141 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_JP1FDKN9 -BS_T1QMEH1N SPG7--BBX -1.64748190848966 1.84928576236343 NA NA no change no change NA NA frameshift SPG7 NA BBX NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_EXJAEW1M -BS_T1W4JA94 KIAA1549--BRAF 4.43123279885865 1.65942450601597 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_QT9T89S5 -BS_T1YHK6B7 GAB2--SERPING1 1.36220073641988 5.25085357313193 NA NA no change differentially expressed NA NA frameshift GAB2 NA SERPING1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DNH1VP67 -BS_T1YHK6B7 COPB1--TEAD1/LINC00958 0.448849002644448 6.9125147792295 NA 7.34589042058677 no change differentially expressed NA differentially expressed frameshift COPB1 NA TEAD1 LINC00958 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_DNH1VP67 -BS_T1YHK6B7 CDK13--ST7-AS2 2.27052368840023 -0.0598042091161661 NA NA differentially expressed no change NA NA frameshift CDK13 NA ST7-AS2 NA Kinase NA NA NA NA ARRIBA 1 PT_DNH1VP67 -BS_T1YHK6B7 ST7--PDE1C 1.31619490618878 0.990003083021962 NA NA no change no change NA NA frameshift ST7 NA PDE1C NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_DNH1VP67 -BS_T1YHK6B7 RRAS2--INSC 2.14936402025707 6.66359575565769 NA NA differentially expressed differentially expressed NA NA in-frame RRAS2 NA INSC NA Oncogene NA NA NA NA ARRIBA 1 PT_DNH1VP67 -BS_T1YHK6B7 GAB2--SERPING1 1.36220073641988 5.25085357313193 NA NA no change differentially expressed NA NA in-frame GAB2 NA SERPING1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DNH1VP67 -BS_T1YHK6B7 RRAS2--INSC 2.14936402025707 6.66359575565769 NA NA differentially expressed differentially expressed NA NA frameshift RRAS2 NA INSC NA Oncogene NA NA NA NA ARRIBA 1 PT_DNH1VP67 -BS_T1YHK6B7 GAB2--RPS4XP13/SERPING1 1.36220073641988 17.1612281590514 NA 5.25085357313193 no change differentially expressed NA differentially expressed frameshift GAB2 NA RPS4XP13 SERPING1 Oncogene NA NA NA NA ARRIBA 1 PT_DNH1VP67 -BS_T1YHK6B7 ZC3HAV1--CNTNAP2 4.04914727114579 -2.13723612333253 NA NA differentially expressed differentially expressed NA NA in-frame ZC3HAV1 NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_DNH1VP67 -BS_T2QPMZCM ERC2--ERC2 0.903808312942885 0.903808312942885 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_6VJ5PNKS -BS_T3DGY9J9 CSNK1D--CPSF6 0.966429890806851 0.821756667600636 NA NA no change no change NA NA frameshift CSNK1D NA CPSF6 NA Kinase NA NA NA NA ARRIBA 1 PT_JSFBMK5V -BS_T4P3J13C CSMD3--CSMD3 2.18715134084823 2.18715134084823 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_N9KYV4WB -BS_T55Y4Z0Y RFX4--RFX4 1.91265418754897 1.91265418754897 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VBNP6JFB -BS_TA9WP4TH CDK8--SNORA68/uc_338 1.21114506760244 18.1375715514782 NA 5.65154891806781 no change differentially expressed NA differentially expressed frameshift CDK8 NA SNORA68 uc_338 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_B7QRTN72 -BS_TA9WP4TH CDK8--SNORA9/RPL21P110 1.21114506760244 12.1634113944315 NA 1.44956750828289 no change differentially expressed NA no change frameshift CDK8 NA SNORA9 RPL21P110 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_B7QRTN72 -BS_TBWYAFSM ROBO2--ROBO2 4.16917403376853 4.16917403376853 NA NA differentially expressed differentially expressed NA NA frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_625X34JX -BS_TDEFAPNH CYB5R4--CYB5R4 1.1140643351292 1.1140643351292 NA NA no change no change NA NA frameshift CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GYJ97915 -BS_TDEFAPNH FGFR1--TACC1 1.88385285406245 2.5274903204582 NA NA no change differentially expressed NA NA in-frame FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA ARRIBA 1 PT_GYJ97915 -BS_TDEFAPNH TNNI3K--TNNI3K -1.31039819625781 -1.31039819625781 NA NA no change no change NA NA frameshift TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_GYJ97915 -BS_TDEFAPNH TACC1--FGFR1 2.5274903204582 1.88385285406245 NA NA differentially expressed no change NA NA frameshift TACC1 NA FGFR1 NA Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_GYJ97915 -BS_TDEFAPNH MYT1L--MYT1L 1.07486286555123 1.07486286555123 NA NA no change no change NA NA frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_GYJ97915 -BS_TDEFAPNH ROBO2--ROBO2 4.63613761574065 4.63613761574065 NA NA differentially expressed differentially expressed NA NA frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_GYJ97915 -BS_TDEFAPNH JAK2--JAK2 1.52248252954992 1.52248252954992 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_GYJ97915 -BS_TDEFAPNH FPGT-TNNI3K--FPGT-TNNI3K 2.26136009221594 2.26136009221594 NA NA differentially expressed differentially expressed NA NA frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_GYJ97915 -BS_TDEFAPNH CSMD3--CSMD3 3.71554042406426 3.71554042406426 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_GYJ97915 -BS_TE0GVDNG ATF6--ATF6 2.59404355514992 2.59404355514992 NA NA differentially expressed differentially expressed NA NA frameshift ATF6 NA ATF6 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_2FK75B27 -BS_TG93XC55 TTC39B--TTC39B 0.879481158557882 0.879481158557882 NA NA no change no change NA NA frameshift TTC39B NA TTC39B NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DDFAZ345 -BS_TG93XC55 KCNH1--KCNH1 4.06632583757526 4.06632583757526 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DDFAZ345 -BS_TG93XC55 KCNH1--AL590132.1 4.06632583757526 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DDFAZ345 -BS_TG93XC55 AL590132.1--KCNH1 NA 4.06632583757526 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DDFAZ345 -BS_TG93XC55 KCNH1--AL590132.1 4.06632583757526 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DDFAZ345 -BS_TG93XC55 FPGT-TNNI3K--FPGT-TNNI3K 1.38879024481945 1.38879024481945 NA NA no change no change NA NA frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_DDFAZ345 -BS_TG93XC55 TNNI3K--TNNI3K 0.0895766536045855 0.0895766536045855 NA NA no change no change NA NA frameshift TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_DDFAZ345 -BS_TG93XC55 AL590132.1--KCNH1 NA 4.06632583757526 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DDFAZ345 -BS_TG93XC55 CSMD3--CSMD3 2.73896489476882 2.73896489476882 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_DDFAZ345 -BS_TG93XC55 ERC2--ERC2 3.12232219439727 3.12232219439727 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DDFAZ345 -BS_TGS109T3 SARS2--PBX4 -0.282503572321946 2.04491603336622 NA NA no change differentially expressed NA NA in-frame SARS2 NA PBX4 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_18QG3Z4H -BS_TGS109T3 ZNF84--AC100807.1/AC087354.1 3.87077358572034 NA NA NA differentially expressed NA NA NA frameshift ZNF84 NA AC100807.1 AC087354.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_18QG3Z4H -BS_TGS109T3 ZNF26--FAM135B 4.2269665246008 1.3843591611601 NA NA differentially expressed no change NA NA frameshift ZNF26 NA FAM135B NA TranscriptionFactor CosmicCensus NA NA NA ARRIBA 1 PT_18QG3Z4H -BS_TGW6HC4X STAT4--AC079777.1/HMGB1P27 0.310815720807434 NA NA -0.205157753308558 no change NA NA no change frameshift STAT4 NA AC079777.1 HMGB1P27 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X0FPPTMT -BS_THSPSG2Z NF2--LINC01638/AL020994.3 0.152657607757932 NA NA NA no change NA NA NA frameshift NF2 NA LINC01638 AL020994.3 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M0FVZ88D -BS_THSPSG2Z POU6F2--POU6F2 10.4145547684554 10.4145547684554 NA NA differentially expressed differentially expressed NA NA frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_M0FVZ88D -BS_TJTEF70D TOP2A--SMG1 11.0439219638137 0.800365144019705 NA NA differentially expressed no change NA NA frameshift TOP2A NA SMG1 NA Oncogene Kinase, Kinase NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_TJTEF70D RHBDD1--LYN 7.78898828972282 0.288641023495184 NA NA differentially expressed no change NA NA frameshift RHBDD1 NA LYN NA NA Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_TJTEF70D DAW1--ZNF609 0.726954556642898 1.65935389948097 NA NA no change no change NA NA frameshift DAW1 NA ZNF609 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_TK84K675 COL5A1--TSC22D1 5.69784118984648 -2.10172521257773 NA NA differentially expressed differentially expressed NA NA frameshift COL5A1 NA TSC22D1 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_TK84K675 ERC2--ERC2 -1.14024465137469 -1.14024465137469 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_MDWPRDBT -BS_TM9MH0RP EPS8--EPS8 3.03347250624721 3.03347250624721 NA NA differentially expressed differentially expressed NA NA frameshift EPS8 NA EPS8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_59D00MBQ -BS_TM9MH0RP NTRK2--CTNND2 1.87625965312201 1.08540221972816 NA NA no change no change NA NA in-frame NTRK2 NA CTNND2 NA Oncogene, Kinase CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_59D00MBQ -BS_TM9MH0RP SETD1B--GYS1 1.82405604574888 1.30683263253933 NA NA no change no change NA NA in-frame SETD1B NA GYS1 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_59D00MBQ -BS_TMTV769C ST18--ST18 1.13203680009561 1.13203680009561 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_8FWP7BR3 -BS_TNRHHYNC RFX4--RFX4 1.91146401870931 1.91146401870931 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_S8E3281G -BS_TNRHHYNC EPB41L3--EPB41L3 -1.14211308037454 -1.14211308037454 NA NA no change no change NA NA frameshift EPB41L3 NA EPB41L3 NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_S8E3281G -BS_TNRHHYNC WNK3--WNK3 2.80925290650017 2.80925290650017 NA NA differentially expressed differentially expressed NA NA in-frame WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_S8E3281G -BS_TQ5QHR17 ZNF556--TMPRSS9 -0.10790933439163 10.6198116901077 NA NA no change differentially expressed NA NA frameshift ZNF556 NA TMPRSS9 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_M7NFAC5G -BS_TRKH2SPE DDX6--XRRA1 2.99799814501874 1.78655152627141 NA NA differentially expressed no change NA NA frameshift DDX6 NA XRRA1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RA6AGBA7 -BS_TRKH2SPE DDX6--XRRA1 2.99799814501874 1.78655152627141 NA NA differentially expressed no change NA NA in-frame DDX6 NA XRRA1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RA6AGBA7 -BS_TRKH2SPE POU6F2--POU6F2 6.82593898589816 6.82593898589816 NA NA differentially expressed differentially expressed NA NA frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_RA6AGBA7 -BS_TRKH2SPE SFMBT2--BDH1 2.20391720485726 -1.23801290511568 NA NA differentially expressed no change NA NA frameshift SFMBT2 NA BDH1 NA Oncogene NA NA NA NA ARRIBA 1 PT_RA6AGBA7 -BS_TRKH2SPE CAMTA1--SMAP2 1.25330819473422 -0.340567494380737 NA NA no change no change NA NA frameshift CAMTA1 NA SMAP2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RA6AGBA7 -BS_TRKH2SPE ZEB2--LINC01798 1.76368839396078 NA NA NA no change NA NA NA frameshift ZEB2 NA LINC01798 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RA6AGBA7 -BS_TRKH2SPE DIP2B--TEAD4 0.778986365607847 0.0874554267136117 NA NA no change no change NA NA in-frame DIP2B NA TEAD4 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_RA6AGBA7 -BS_TRKH2SPE FOXJ3--NFYC 1.11925421571295 0.831503028483757 NA NA no change no change NA NA frameshift FOXJ3 NA NFYC NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RA6AGBA7 -BS_TRKH2SPE NTRK3--NTRK3 2.09091726351676 2.09091726351676 NA NA differentially expressed differentially expressed NA NA frameshift NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RA6AGBA7 -BS_TRKH2SPE ZNF589--GABRA3 -0.00924232432168245 0.59101422205068 NA NA no change no change NA NA frameshift ZNF589 NA GABRA3 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RA6AGBA7 -BS_TW8DQH8J WNK3--WNK3 4.78475267363928 4.78475267363928 NA NA differentially expressed differentially expressed NA NA frameshift WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_TW8DQH8J ERN1--ATP8B1 1.47724519984033 2.75853825010059 NA NA no change differentially expressed NA NA frameshift ERN1 NA ATP8B1 NA Kinase Oncogene NA NA NA ARRIBA 1 PT_9S6WMQ92 -BS_TXZ7KHTQ PCDH9--TPT1-AS1 2.72082122502083 -1.10512232407116 NA NA differentially expressed no change NA NA frameshift PCDH9 NA TPT1-AS1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_VWZZTK38 -BS_TXZ7KHTQ ADNP2--EXOC6 1.59077018118278 -0.639243804483322 NA NA no change no change NA NA in-frame ADNP2 NA EXOC6 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_VWZZTK38 -BS_TXZ7KHTQ KIT--AC098868.1/LINC02260 1.79709218923413 NA NA NA no change NA NA NA frameshift KIT NA AC098868.1 LINC02260 Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_VWZZTK38 -BS_TYAYZ9ZW FGFR1--HERC6 -0.725681342616348 -0.498287537724599 NA NA no change no change NA NA frameshift FGFR1 NA HERC6 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_NV584F7Q -BS_TYAYZ9ZW ZNF521--MYO18B 0.0887810303512433 0.0954125009930125 NA NA no change no change NA NA frameshift ZNF521 NA MYO18B NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene NA NA NA ARRIBA 1 PT_NV584F7Q -BS_TZ5D0A7R ARHGAP35--AP2S1/ARHGAP35 1.25731556156497 -0.0698125452536308 NA 1.25731556156497 no change no change NA no change frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_8SDJXNFR -BS_TZ5D0A7R NCOA2--JAG2 5.87172112426916 1.76229400690467 NA NA differentially expressed no change NA NA frameshift NCOA2 NA JAG2 NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_8SDJXNFR -BS_TZ5D0A7R JAG2--TMOD2 1.76229400690467 -3.00436286550644 NA NA no change differentially expressed NA NA frameshift JAG2 NA TMOD2 NA Oncogene NA NA NA NA ARRIBA 1 PT_8SDJXNFR -BS_TZ5D0A7R C11orf95--NCOA2 4.72643266901602 5.87172112426916 NA NA differentially expressed differentially expressed NA NA frameshift C11orf95 NA NCOA2 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_8SDJXNFR -BS_TZ5D0A7R PLCE1--PIPSL/PLCE1 5.92825228563835 3.9732566730221 NA 5.92825228563835 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_8SDJXNFR -BS_TZVFR600 CTNNB1--LINC01572 1.03207401559984 10.9676878848193 NA NA no change differentially expressed NA NA frameshift CTNNB1 NA LINC01572 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RFB07MZS -BS_TZVFR600 EIF3H--PVT1 7.94083432271731 7.95237672096039 NA NA differentially expressed differentially expressed NA NA frameshift EIF3H NA PVT1 NA NA Oncogene NA NA NA ARRIBA 1 PT_RFB07MZS -BS_V0Q1G94N KIAA1549--BRAF 3.76393062789238 1.94347224846006 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_Y572BRC1 -BS_V3REENH9 KIAA1549--BRAF 3.01343323546446 0.896902403246304 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_P9RT6693 -BS_V3Z3DB4N CDK14--KLF14/AC016831.6 5.4000049894713 0.290701008592063 NA 67.1127450984614 differentially expressed no change NA differentially expressed frameshift CDK14 NA KLF14 AC016831.6 Kinase TranscriptionFactor NA NA NA ARRIBA 1 PT_PF9EC93Q -BS_V3Z3DB4N RSF1--TENM4 4.51414190223587 5.14771496455627 NA NA differentially expressed differentially expressed NA NA frameshift RSF1 NA TENM4 NA Oncogene NA NA NA NA ARRIBA 1 PT_PF9EC93Q -BS_V3Z3DB4N CDK14--STEAP4/EIF4A1P13 5.4000049894713 -0.61573888532462 NA -0.0699256872624616 differentially expressed no change NA no change frameshift CDK14 NA STEAP4 EIF4A1P13 Kinase NA NA NA NA ARRIBA 1 PT_PF9EC93Q -BS_V3Z3DB4N ZNF528--HAS1 1.92563885951693 -1.40317246226098 NA NA no change no change NA NA frameshift ZNF528 NA HAS1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_PF9EC93Q -BS_V3Z3DB4N CDK14--RNU6-1125P/RPL31P35 5.4000049894713 NA NA 97.1368350765486 differentially expressed NA NA differentially expressed frameshift CDK14 NA RNU6-1125P RPL31P35 Kinase NA NA NA NA ARRIBA 1 PT_PF9EC93Q -BS_V3Z3DB4N MKLN1--CDK14 8.65543782267119 5.4000049894713 NA NA differentially expressed differentially expressed NA NA in-frame MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion ARRIBA 1 PT_PF9EC93Q -BS_V3Z3DB4N ERC2--ERC2 0.928035977622253 0.928035977622253 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_PF9EC93Q -BS_V3Z3DB4N CDK14--MKLN1 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA in-frame CDK14 NA MKLN1 NA Kinase NA NA NA NA ARRIBA 1 PT_PF9EC93Q -BS_V3Z3DB4N SRPK2--LHFPL3 0.92186894897023 1.4927168058623 NA NA no change no change NA NA frameshift SRPK2 NA LHFPL3 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_PF9EC93Q -BS_V3Z3DB4N CDK14--MKLN1 5.4000049894713 8.65543782267119 NA NA differentially expressed differentially expressed NA NA frameshift CDK14 NA MKLN1 NA Kinase NA NA NA NA ARRIBA 1 PT_PF9EC93Q -BS_V3Z3DB4N MKLN1--CDK14 8.65543782267119 5.4000049894713 NA NA differentially expressed differentially expressed NA NA frameshift MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion ARRIBA 1 PT_PF9EC93Q -BS_V4W81SFC EIF2AK4--CCDC47 -0.26005390127199 2.11232027220733 NA NA no change differentially expressed NA NA in-frame EIF2AK4 NA CCDC47 NA Kinase NA NA NA NA ARRIBA 1 PT_W17NV5YG -BS_V4W81SFC YAP1--MAMLD1 3.25980173175086 2.52430226610353 NA NA differentially expressed differentially expressed NA NA in-frame YAP1 NA MAMLD1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_W17NV5YG -BS_V72GX2AZ KIAA1549--BRAF 3.53607614537665 1.88920897965447 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_V07ZH5JS -BS_V72H4RQS NCAM1--CADM1 0.954128289878702 2.62327963155869 NA NA no change differentially expressed NA NA in-frame NCAM1 NA CADM1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_KN25EYMG -BS_V7BJM89K FUCA2--FGFR1OP 0.84139510340879 -0.138793153379994 NA NA no change no change NA NA frameshift FUCA2 NA FGFR1OP NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_94EHCMXA -BS_V89HGTET KIAA1549--BRAF 3.04867242540208 1.28278562318281 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_N9CGVG02 -BS_V89HGTET PLCE1--PIPSL/PLCE1 4.31132318471027 3.76438911541161 NA 4.31132318471027 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_N9CGVG02 -BS_V96WVE3Z POU6F2--POU6F2 8.91959248165928 8.91959248165928 NA NA differentially expressed differentially expressed NA NA frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_H3WWDMW9 -BS_VA5T4KAA DLD--NRCAM 1.89064216000293 1.08130496150473 NA NA no change no change NA NA in-frame DLD NA NRCAM NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_2ZTXV44P -BS_VA5T4KAA DLD--NRCAM 1.89064216000293 1.08130496150473 NA NA no change no change NA NA frameshift DLD NA NRCAM NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_2ZTXV44P -BS_VAAHBH60 C11orf95--RELA/RN7SL309P 5.84290434698574 5.40743688847517 NA 7.26510464780709 differentially expressed differentially expressed NA differentially expressed frameshift C11orf95 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GH27VJBD -BS_VAAHBH60 C11orf95--RELA 5.84290434698574 5.40743688847517 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GH27VJBD -BS_VAAHBH60 C2CD3--MACROD1 4.25296925918212 -1.83376536467715 NA NA differentially expressed no change NA NA in-frame C2CD3 NA MACROD1 NA NA Oncogene NA NA NA ARRIBA 1 PT_GH27VJBD -BS_VAAHBH60 C2CD3--MACROD1/STIP1 4.25296925918212 -1.83376536467715 NA 1.30690006630198 differentially expressed no change NA no change frameshift C2CD3 NA MACROD1 STIP1 NA Oncogene NA NA NA ARRIBA 1 PT_GH27VJBD -BS_VARR255N KIAA1549--BRAF 2.90026506175739 1.55960215605618 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_W3FSA7NH -BS_VJ2S5DVS GLI3--RALA 6.18522094876595 2.01154228911604 NA NA differentially expressed differentially expressed NA NA frameshift GLI3 NA RALA NA Oncogene, TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_MT27S7S4 -BS_VJ2S5DVS TNFAIP1--AC007491.1/CRNDE 1.38199468998703 NA NA 1.67423303352905 no change NA NA no change frameshift TNFAIP1 NA AC007491.1 CRNDE Oncogene NA NA NA NA ARRIBA 1 PT_MT27S7S4 -BS_VJ2S5DVS PCCA--FGF14 4.14815933114217 -1.59996010156886 NA NA differentially expressed no change NA NA frameshift PCCA NA FGF14 NA NA Oncogene NA NA NA ARRIBA 1 PT_MT27S7S4 -BS_VJ2S5DVS FGF14--UBAC2 -1.59996010156886 2.15451218922236 NA NA no change differentially expressed NA NA in-frame FGF14 NA UBAC2 NA Oncogene NA NA NA NA ARRIBA 1 PT_MT27S7S4 -BS_VJ2S5DVS NOTCH1--AGPAT2/FAM69B 6.86130388184095 0.712367590411219 NA -0.175954385214715 differentially expressed no change NA no change frameshift NOTCH1 NA AGPAT2 FAM69B TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_MT27S7S4 -BS_VJ2S5DVS KIF21A--SNAPC3 -1.58729756116538 0.694601976835736 NA NA no change no change NA NA frameshift KIF21A NA SNAPC3 NA NA Oncogene NA NA NA ARRIBA 1 PT_MT27S7S4 -BS_VJ2S5DVS CHD9--PHKB 5.64409369538003 2.97696130140132 NA NA differentially expressed differentially expressed NA NA in-frame CHD9 NA PHKB NA Oncogene NA NA NA NA ARRIBA 1 PT_MT27S7S4 -BS_VJ2S5DVS BNC2--SGMS1 7.51854884923976 1.63200420357088 NA NA differentially expressed no change NA NA frameshift BNC2 NA SGMS1 NA TranscriptionFactor TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_MT27S7S4 -BS_VJ2S5DVS ERCC6--FTH1P12/RNU6-246P 5.91239393162892 -0.888827669112816 NA NA differentially expressed no change NA NA frameshift ERCC6 NA FTH1P12 RNU6-246P Oncogene NA NA NA NA ARRIBA 1 PT_MT27S7S4 -BS_VJ2S5DVS SARNP--AL590824.1/FAM46A -1.3962679016493 NA NA 0.877969325070145 no change NA NA no change frameshift SARNP NA AL590824.1 FAM46A Oncogene NA NA NA NA ARRIBA 1 PT_MT27S7S4 -BS_VJ2S5DVS PHKB--CHD9 2.97696130140132 5.64409369538003 NA NA differentially expressed differentially expressed NA NA frameshift PHKB NA CHD9 NA NA Oncogene NA NA NA ARRIBA 1 PT_MT27S7S4 -BS_VJ2S5DVS RBL2--AC002524.1/GLRA2 1.41744764470725 NA NA -1.21364886506901 no change NA NA no change frameshift RBL2 NA AC002524.1 GLRA2 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_MT27S7S4 -BS_VJ2S5DVS PIK3CB--CLSTN2 -0.0134177956563635 0.0383694030437045 NA NA no change no change NA NA frameshift PIK3CB NA CLSTN2 NA CosmicCensus, Kinase NA NA NA NA ARRIBA 1 PT_MT27S7S4 -BS_VJAC9H58 VGLL3--CHD9 11.3279670851281 4.67696665531553 NA NA differentially expressed differentially expressed NA NA frameshift VGLL3 NA CHD9 NA NA Oncogene NA NA NA ARRIBA 1 PT_SABHZ7XX -BS_VJAC9H58 VGLL3--CHD9 11.3279670851281 4.67696665531553 NA NA differentially expressed differentially expressed NA NA in-frame VGLL3 NA CHD9 NA NA Oncogene NA NA NA ARRIBA 1 PT_SABHZ7XX -BS_VJAC9H58 CHD9--VGLL3 4.67696665531553 11.3279670851281 NA NA differentially expressed differentially expressed NA NA in-frame CHD9 NA VGLL3 NA Oncogene NA NA NA NA ARRIBA 1 PT_SABHZ7XX -BS_VMMJYN8Z AL590132.1--KCNH1 NA 2.63800883023558 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_WY8REZ3P -BS_VMMJYN8Z ST18--ST18 -0.86338484742586 -0.86338484742586 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_WY8REZ3P -BS_VMMJYN8Z KCNH1--AL590132.1 2.63800883023558 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_WY8REZ3P -BS_VMMJYN8Z KCNH1--AL590132.1 2.63800883023558 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_WY8REZ3P -BS_VMMJYN8Z KCNH1--KCNH1 2.63800883023558 2.63800883023558 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WY8REZ3P -BS_VMMJYN8Z ERC2--ERC2 2.33959689098127 2.33959689098127 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WY8REZ3P -BS_VMMJYN8Z AL590132.1--KCNH1 NA 2.63800883023558 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_WY8REZ3P -BS_VMQMGSJY PCNX1--DPF3 NA 1.71626445126886 NA NA NA no change NA NA frameshift PCNX1 NA DPF3 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_63F63QY0 -BS_VMQMGSJY ZFPM2--AC027031.2 1.28227291925511 NA NA NA no change NA NA NA frameshift ZFPM2 NA AC027031.2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_63F63QY0 -BS_VNE0ZPBS ERC2--ERC2 2.75898519901412 2.75898519901412 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_F9F3E8YR -BS_VNE0ZPBS KCNH1--AL590132.1 3.56526165284459 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_F9F3E8YR -BS_VNE0ZPBS KCNH1--AL590132.1 3.56526165284459 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_F9F3E8YR -BS_VNE0ZPBS KCNH1--KCNH1 3.56526165284459 3.56526165284459 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_F9F3E8YR -BS_VNE0ZPBS AL590132.1--KCNH1 NA 3.56526165284459 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_F9F3E8YR -BS_VNE0ZPBS AL590132.1--KCNH1 NA 3.56526165284459 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_F9F3E8YR -BS_VNE0ZPBS JAK2--JAK2 0.993954214120359 0.993954214120359 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_F9F3E8YR -BS_VNK9XYV9 KIAA1549--KIAA1549 3.14328478166288 3.14328478166288 NA NA differentially expressed differentially expressed NA NA frameshift KIAA1549 NA KIAA1549 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_WYR1DVHX -BS_VNK9XYV9 RFX4--RFX4 -0.301564809287849 -0.301564809287849 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_WYR1DVHX -BS_VP3C8WZT KIAA1549--BRAF 4.11951901449022 1.62306086160364 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_962TCBVR -BS_VP3C8WZT WNK3--WNK3 10.672209437426 10.672209437426 NA NA differentially expressed differentially expressed NA NA in-frame WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_962TCBVR -BS_VPBMDMQX PKN1--ARHGEF1 1.96567244671541 1.08021696507261 NA NA no change no change NA NA frameshift PKN1 NA ARHGEF1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_STRDJQ01 -BS_VPMKHW9X KCNH1--AL590132.1 3.9944346318268 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_WPYCXMDA -BS_VPMKHW9X KCNH1--AL590132.1 3.9944346318268 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_WPYCXMDA -BS_VPMKHW9X MCM9--MCM9 1.54420896674022 1.54420896674022 NA NA no change no change NA NA in-frame MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_WPYCXMDA -BS_VPMKHW9X AL590132.1--KCNH1 NA 3.9944346318268 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_WPYCXMDA -BS_VPMKHW9X ERC2--ERC2 2.8652544891693 2.8652544891693 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WPYCXMDA -BS_VPMKHW9X CNTN4--CNTN4 2.60836383211905 2.60836383211905 NA NA differentially expressed differentially expressed NA NA in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WPYCXMDA -BS_VPMKHW9X KCNH1--KCNH1 3.9944346318268 3.9944346318268 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WPYCXMDA -BS_VPMKHW9X AL590132.1--KCNH1 NA 3.9944346318268 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_WPYCXMDA -BS_VR7FR1NE KIAA1549--BRAF 3.95852147491727 1.59157396847229 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_6MWPJ96F -BS_VTJ9ESSV KCNH1--KCNH1 2.53696660505022 2.53696660505022 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_MA0J8DSN -BS_VTJ9ESSV KCNH1--AL590132.1 2.53696660505022 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_MA0J8DSN -BS_VTJ9ESSV ERC2--ERC2 1.82627640568591 1.82627640568591 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_MA0J8DSN -BS_VTJ9ESSV AL590132.1--KCNH1 NA 2.53696660505022 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_MA0J8DSN -BS_VTJ9ESSV AL590132.1--KCNH1 NA 2.53696660505022 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_MA0J8DSN -BS_VTJ9ESSV KCNH1--AL590132.1 2.53696660505022 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_MA0J8DSN -BS_VTJ9ESSV ARHGAP35--AP2S1/ARHGAP35 2.27243331152027 -1.21252236632362 NA 2.27243331152027 differentially expressed no change NA differentially expressed frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_MA0J8DSN -BS_VVFBW0YH GTF2F2--PCDH17 1.0452859655418 6.46297263095476 NA NA no change differentially expressed NA NA in-frame GTF2F2 NA PCDH17 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_7QKGGMKV -BS_VVFBW0YH STK24--RPS10P21/SNORD37 0.824229292010384 99.935154074055 NA NA no change differentially expressed NA NA frameshift STK24 NA RPS10P21 SNORD37 Kinase NA NA NA NA ARRIBA 1 PT_7QKGGMKV -BS_VVFBW0YH RRAS2--WNT9B/LINC01974 1.46859543507773 -0.777673993200134 NA NA no change no change NA NA frameshift RRAS2 NA WNT9B LINC01974 Oncogene NA NA NA NA ARRIBA 1 PT_7QKGGMKV -BS_VVTHDRBD OSBPL9--AL592045.1/MIXL1 -0.00225303492110324 NA NA 10.929380199741 no change NA NA differentially expressed frameshift OSBPL9 NA AL592045.1 MIXL1 NA NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_Y76A7PBA -BS_VW85Q4XJ KIAA1549--BRAF 3.00009964850016 1.49124893146122 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_2YT37G8P -BS_VXHWZJDC CLTCL1--AC245060.2/AC245060.4 1.24904172959104 NA NA NA no change NA NA NA frameshift CLTCL1 NA AC245060.2 AC245060.4 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_5X061J42 -BS_VXHWZJDC ADIPOR2--ERC1 1.89253186574967 5.26137251727071 NA NA no change differentially expressed NA NA frameshift ADIPOR2 NA ERC1 NA NA CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_5X061J42 -BS_W1385R8Y SRCAP--SRRM2 -0.745812792516335 0.291078897584339 NA NA no change no change NA NA frameshift SRCAP NA SRRM2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Y585X1BS -BS_W1385R8Y CAMKK2--YWHAH -1.39350092901059 -2.37770707831688 NA NA no change differentially expressed NA NA frameshift CAMKK2 NA YWHAH NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_Y585X1BS -BS_W1385R8Y CAMKK2--C22orf24 -1.39350092901059 0.894229603196406 NA NA no change no change NA NA frameshift CAMKK2 NA C22orf24 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_Y585X1BS -BS_W1385R8Y PDE9A--CRYAA/LINC00322 3.66017817641768 2.5281772742612 NA 1.5621918694889 differentially expressed differentially expressed NA no change frameshift PDE9A NA CRYAA LINC00322 NA Oncogene NA NA NA ARRIBA 1 PT_Y585X1BS -BS_W1385R8Y RGS2--PTEN 0.32732333843925 2.7957281701359 NA NA no change differentially expressed NA NA frameshift RGS2 NA PTEN NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_Y585X1BS -BS_W1385R8Y ZNF564--PRKACA -0.998746031968493 0.0734950776996731 NA NA no change no change NA NA in-frame ZNF564 NA PRKACA NA TranscriptionFactor CosmicCensus, Kinase NA NA NA ARRIBA 1 PT_Y585X1BS -BS_W1385R8Y RGS2--PTEN 0.32732333843925 2.7957281701359 NA NA no change differentially expressed NA NA in-frame RGS2 NA PTEN NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_Y585X1BS -BS_W1385R8Y AC008758.1--PRKACA NA 0.0734950776996731 NA NA NA no change NA NA in-frame AC008758.1 NA PRKACA NA NA CosmicCensus, Kinase NA NA NA ARRIBA 1 PT_Y585X1BS -BS_W1385R8Y ARNT2--MALL -1.12769721912889 4.46382083440708 NA NA no change differentially expressed NA NA frameshift ARNT2 NA MALL NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Y585X1BS -BS_W18SF91A ERC2--ERC2 0.243595524861717 0.243595524861717 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_HBT0C66Y -BS_W18SF91A KCNH1--AL590132.1 1.61597671485542 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_HBT0C66Y -BS_W18SF91A RFX4--RFX4 2.10066808627053 2.10066808627053 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_HBT0C66Y -BS_W18SF91A KCNH1--KCNH1 1.61597671485542 1.61597671485542 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_HBT0C66Y -BS_W18SF91A ST18--ST18 1.93643216635544 1.93643216635544 NA NA no change no change NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_HBT0C66Y -BS_W18SF91A MYT1L--MYT1L -1.61831031108123 -1.61831031108123 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_HBT0C66Y -BS_W18SF91A KCNH1--AL590132.1 1.61597671485542 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_HBT0C66Y -BS_W18SF91A AL590132.1--KCNH1 NA 1.61597671485542 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_HBT0C66Y -BS_W18SF91A AL590132.1--KCNH1 NA 1.61597671485542 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_HBT0C66Y -BS_W18SF91A CSMD3--CSMD3 0.150274689576499 0.150274689576499 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_HBT0C66Y -BS_W36RZSFA RXRA--EPHB2 -0.202736735635646 3.30371915591417 NA NA no change differentially expressed NA NA frameshift RXRA NA EPHB2 NA TranscriptionFactor Kinase, TumorSuppressorGene, Kinase NA NA NA ARRIBA 1 PT_7TRGHZBK -BS_W3R88RFP SHB--PSIP1 0.13949785664032 -1.18160082012232 NA NA no change no change NA NA in-frame SHB NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2ECVKTTQ -BS_W3R88RFP SHB--PSIP1 0.13949785664032 -1.18160082012232 NA NA no change no change NA NA frameshift SHB NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2ECVKTTQ -BS_W3R88RFP AL138752.2--PSIP1 NA -1.18160082012232 NA NA NA no change NA NA in-frame AL138752.2 NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2ECVKTTQ -BS_W3R88RFP ABI1--SLX4IP 0.361508138749733 2.7036781641044 NA NA no change differentially expressed NA NA frameshift ABI1 NA SLX4IP NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_2ECVKTTQ -BS_W4H1D4Y6 HMG20A--ANKRD34C-AS1 1.41228102897185 0.0057967910938702 NA NA no change no change NA NA frameshift HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 CTNND2--LINC02223 -2.81395566425319 NA NA NA differentially expressed NA NA NA frameshift CTNND2 NA LINC02223 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 DDR1--MRPS18B 3.3596116002424 1.84292260905199 NA NA differentially expressed no change NA NA frameshift DDR1 NA MRPS18B NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 TMBIM6--CXXC5 2.36023656346926 1.63972948988479 NA NA differentially expressed no change NA NA frameshift TMBIM6 NA CXXC5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 MTAP--ADAMTSL1 4.52588858050896 3.13896347666549 NA NA differentially expressed differentially expressed NA NA frameshift MTAP NA ADAMTSL1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 GMEB1--AL020995.1 4.08572278067886 NA NA NA differentially expressed NA NA NA frameshift GMEB1 NA AL020995.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 URGCP-MRPS24--AC073176.1/UNC5B -1.39255016603236 NA NA -1.28354834039325 no change NA NA no change frameshift URGCP-MRPS24 NA AC073176.1 UNC5B NA NA NA TumorSuppressorGene NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 HMG20A--AGBL1 1.41228102897185 -0.590152551463221 NA NA no change no change NA NA frameshift HMG20A NA AGBL1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 TRIT1--AL603840.1 0.0528613453874165 NA NA NA no change NA NA NA frameshift TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 ST20--CEMIP 0.451441599120259 3.16871519349232 NA NA no change differentially expressed NA NA frameshift ST20 NA CEMIP NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 CCDC127--CTNND2 0.786395216028494 -2.81395566425319 NA NA no change differentially expressed NA NA frameshift CCDC127 NA CTNND2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 URGCP--AC073176.1/UNC5B -0.661316405252497 NA NA -1.28354834039325 no change NA NA no change frameshift URGCP NA AC073176.1 UNC5B NA NA NA TumorSuppressorGene NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 SLC6A3--AP000282.1 -0.258038939045862 NA NA NA no change NA NA NA frameshift SLC6A3 NA AP000282.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 LRRTM3--CTNNA3 0.645505686892853 0.308765216953495 NA NA no change no change NA NA frameshift LRRTM3 NA CTNNA3 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 ZNF568--LINC01343/AL513479.1 3.09468992058139 -0.273536901497991 NA NA differentially expressed no change NA NA frameshift ZNF568 NA LINC01343 AL513479.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 AHRR--AP000949.1/AP001116.1 1.87462107768275 NA NA NA no change NA NA NA frameshift AHRR NA AP000949.1 AP001116.1 TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 E2F6--PDIA6 3.67812899935831 3.82515070170512 NA NA differentially expressed differentially expressed NA NA in-frame E2F6 NA PDIA6 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 SLC12A7--PDCD6 2.85137239279467 0.558667813889311 NA NA differentially expressed no change NA NA frameshift SLC12A7 NA PDCD6 NA NA Oncogene NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 HMG20A--AC016987.1 1.41228102897185 NA NA NA no change NA NA NA frameshift HMG20A NA AC016987.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 CTNND2--PTPRS -2.81395566425319 3.77742760462043 NA NA differentially expressed differentially expressed NA NA frameshift CTNND2 NA PTPRS NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 EPHB2--CSMD2 0.759657076638186 1.48407638355506 NA NA no change no change NA NA frameshift EPHB2 NA CSMD2 NA Kinase, TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4H1D4Y6 PDCD6--AC122710.3/LINC02236 0.558667813889311 NA NA NA no change NA NA NA frameshift PDCD6 NA AC122710.3 LINC02236 Oncogene NA NA NA NA ARRIBA 1 PT_X7HC5YCY -BS_W4HGV6E7 ZNF528--ZNF610/ZNF880 0.589547239395339 1.83829943154208 NA 2.1567988295027 no change no change NA differentially expressed frameshift ZNF528 NA ZNF610 ZNF880 TranscriptionFactor TranscriptionFactor NA TranscriptionFactor NA ARRIBA 1 PT_2C63FJAM -BS_W4HGV6E7 C6orf58--QKI 12.5106587201147 2.1446437561174 NA NA differentially expressed differentially expressed NA NA frameshift C6orf58 NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_2C63FJAM -BS_W4HGV6E7 MYB--QKI 9.10196567919669 2.1446437561174 NA NA differentially expressed differentially expressed NA NA in-frame MYB NA QKI NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_2C63FJAM -BS_W4HGV6E7 QKI--C6orf58/AL592291.1 2.1446437561174 12.5106587201147 NA NA differentially expressed differentially expressed NA NA frameshift QKI NA C6orf58 AL592291.1 TumorSuppressorGene, CosmicCensus NA NA NA NA ARRIBA 1 PT_2C63FJAM -BS_W4HGV6E7 PLCE1--PIPSL/PLCE1 4.87926458067718 4.8788412822714 NA 4.87926458067718 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_2C63FJAM -BS_W4HGV6E7 TP63--TP63 12.4333249028921 12.4333249028921 NA NA differentially expressed differentially expressed NA NA frameshift TP63 NA TP63 NA TumorSuppressorGene, CosmicCensus, TranscriptionFactor TumorSuppressorGene, CosmicCensus, TranscriptionFactor NA NA NA ARRIBA 1 PT_2C63FJAM -BS_W4HGV6E7 MYO3A--MYO3A 3.10170404784092 3.10170404784092 NA NA differentially expressed differentially expressed NA NA frameshift MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_2C63FJAM -BS_W4HGV6E7 RFX4--RFX4 2.58210152262184 2.58210152262184 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_2C63FJAM -BS_W4HGV6E7 QKI--C6orf58 2.1446437561174 12.5106587201147 NA NA differentially expressed differentially expressed NA NA frameshift QKI NA C6orf58 NA TumorSuppressorGene, CosmicCensus NA NA NA NA ARRIBA 1 PT_2C63FJAM -BS_W4HGV6E7 PACRG--LINC00271/AL133319.1 3.40372253215831 5.48865476617296 NA NA differentially expressed differentially expressed NA NA frameshift PACRG NA LINC00271 AL133319.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_2C63FJAM -BS_W4HGV6E7 MYB--QKI 9.10196567919669 2.1446437561174 NA NA differentially expressed differentially expressed NA NA frameshift MYB NA QKI NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_2C63FJAM -BS_W60RQAKK CORO1C--HNRNPKP3/API5 0.148585331928523 3.52445111589269 NA 1.36019330975827 no change differentially expressed NA no change frameshift CORO1C NA HNRNPKP3 API5 Oncogene NA NA NA NA ARRIBA 1 PT_CSZ9QA1N -BS_W60RQAKK CORO1C--API5 0.148585331928523 1.36019330975827 NA NA no change no change NA NA frameshift CORO1C NA API5 NA Oncogene NA NA NA NA ARRIBA 1 PT_CSZ9QA1N -BS_W60RQAKK MPZL1--RABGAP1L 2.83881409649482 0.296532351279467 NA NA differentially expressed no change NA NA frameshift MPZL1 NA RABGAP1L NA NA Oncogene NA NA NA ARRIBA 1 PT_CSZ9QA1N -BS_W60RQAKK UCK2--RABGAP1L 0.879934440171543 0.296532351279467 NA NA no change no change NA NA frameshift UCK2 NA RABGAP1L NA NA Oncogene NA NA NA ARRIBA 1 PT_CSZ9QA1N -BS_W60RQAKK RABGAP1L--ASH1L 0.296532351279467 2.87945751222729 NA NA no change differentially expressed NA NA frameshift RABGAP1L NA ASH1L NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_CSZ9QA1N -BS_W60RQAKK ASH1L--CADM3 2.87945751222729 -0.696373411576237 NA NA differentially expressed no change NA NA frameshift ASH1L NA CADM3 NA TranscriptionFactor TumorSuppressorGene NA NA NA ARRIBA 1 PT_CSZ9QA1N -BS_W60RQAKK PCDH9--DYNC2H1/AP002989.1 2.37788022133083 -2.16273174637886 NA NA differentially expressed differentially expressed NA NA frameshift PCDH9 NA DYNC2H1 AP002989.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CSZ9QA1N -BS_W60RQAKK ETV3--ASH1L 1.7338584760195 2.87945751222729 NA NA no change differentially expressed NA NA frameshift ETV3 NA ASH1L NA Oncogene, TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_CSZ9QA1N -BS_W60RQAKK USP15--TMPO-AS1 2.10229255615248 12.6033076467852 NA NA differentially expressed differentially expressed NA NA frameshift USP15 NA TMPO-AS1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CSZ9QA1N -BS_W60RQAKK PCDH9--PDGFD 2.37788022133083 2.42466995339057 NA NA differentially expressed differentially expressed NA NA frameshift PCDH9 NA PDGFD NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CSZ9QA1N -BS_W644VEVE NMT1--RPS6KB1 1.14775455252728 2.58226793936485 NA NA no change differentially expressed NA NA frameshift NMT1 NA RPS6KB1 NA Oncogene Kinase NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--AC113608.1/snoU13 10.5051335938283 NA NA NA differentially expressed NA NA NA frameshift CCND2 NA AC113608.1 snoU13 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE WNK1--RN7SL104P/AC010145.1 1.94863063009368 NA NA NA no change NA NA NA frameshift WNK1 NA RN7SL104P AC010145.1 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--NINJ2 10.5051335938283 4.30346219338763 NA NA differentially expressed differentially expressed NA NA frameshift CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE WNK1--MYCNOS 1.94863063009368 14.3828701915834 NA NA no change differentially expressed NA NA frameshift WNK1 NA MYCNOS NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--NINJ2 10.5051335938283 4.30346219338763 NA NA differentially expressed differentially expressed NA NA in-frame CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE B4GALNT3--CCND2-AS1 9.84057173156904 2.35256618193704 NA NA differentially expressed differentially expressed NA NA frameshift B4GALNT3 NA CCND2-AS1 NA NA Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE B4GALNT3--CCND2 9.84057173156904 10.5051335938283 NA NA differentially expressed differentially expressed NA NA in-frame B4GALNT3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE B4GALNT3--CCND2 9.84057173156904 10.5051335938283 NA NA differentially expressed differentially expressed NA NA frameshift B4GALNT3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--RN7SL104P/AC010145.1 10.5051335938283 NA NA NA differentially expressed NA NA NA frameshift CCND2 NA RN7SL104P AC010145.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE WNK1--CCDC77 1.94863063009368 2.84829449265605 NA NA no change differentially expressed NA NA in-frame WNK1 NA CCDC77 NA Kinase, Kinase NA NA NA TCGAFusion ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--AC010145.1 10.5051335938283 NA NA NA differentially expressed NA NA NA frameshift CCND2 NA AC010145.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--AC010880.1 10.5051335938283 NA NA NA differentially expressed NA NA NA frameshift CCND2 NA AC010880.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--B4GALNT3 10.5051335938283 9.84057173156904 NA NA differentially expressed differentially expressed NA NA in-frame CCND2 NA B4GALNT3 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--MYCNOS 10.5051335938283 14.3828701915834 NA NA differentially expressed differentially expressed NA NA frameshift CCND2 NA MYCNOS NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--CRACR2A 10.5051335938283 28.5413150224443 NA NA differentially expressed differentially expressed NA NA in-frame CCND2 NA CRACR2A NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE ERC1--CACNA1C 3.38205052943934 -1.49491098309613 NA NA differentially expressed no change NA NA in-frame ERC1 NA CACNA1C NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE WNK1--CCDC77 1.94863063009368 2.84829449265605 NA NA no change differentially expressed NA NA frameshift WNK1 NA CCDC77 NA Kinase, Kinase NA NA NA TCGAFusion ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--AC010745.1/AC010745.2 10.5051335938283 171.467593322993 NA 277.880413973593 differentially expressed differentially expressed NA differentially expressed frameshift CCND2 NA AC010745.1 AC010745.2 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE B4GALNT3--ERC1 9.84057173156904 3.38205052943934 NA NA differentially expressed differentially expressed NA NA in-frame B4GALNT3 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE B4GALNT3--ERC1 9.84057173156904 3.38205052943934 NA NA differentially expressed differentially expressed NA NA frameshift B4GALNT3 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--B4GALNT3 10.5051335938283 9.84057173156904 NA NA differentially expressed differentially expressed NA NA frameshift CCND2 NA B4GALNT3 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE NINJ2--CCND2-AS1 4.30346219338763 2.35256618193704 NA NA differentially expressed differentially expressed NA NA frameshift NINJ2 NA CCND2-AS1 NA NA Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--CRACR2A 10.5051335938283 28.5413150224443 NA NA differentially expressed differentially expressed NA NA frameshift CCND2 NA CRACR2A NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE ERC1--AC010880.1/AC104623.1 3.38205052943934 NA NA NA differentially expressed NA NA NA frameshift ERC1 NA AC010880.1 AC104623.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--WNK1 10.5051335938283 1.94863063009368 NA NA differentially expressed no change NA NA frameshift CCND2 NA WNK1 NA CosmicCensus, Oncogene Kinase, Kinase NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE HSPG2--AC068759.1 2.69940299427287 NA NA NA differentially expressed NA NA NA frameshift HSPG2 NA AC068759.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--TSPAN9 10.5051335938283 1.93250949774353 NA NA differentially expressed no change NA NA in-frame CCND2 NA TSPAN9 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--WNT5B 10.5051335938283 7.93034064068299 NA NA differentially expressed differentially expressed NA NA in-frame CCND2 NA WNT5B NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE ERC1--AC005842.1 3.38205052943934 NA NA NA differentially expressed NA NA NA frameshift ERC1 NA AC005842.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--WNT5B 10.5051335938283 7.93034064068299 NA NA differentially expressed differentially expressed NA NA frameshift CCND2 NA WNT5B NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE RAD52--B4GALNT3 0.476202672173778 9.84057173156904 NA NA no change differentially expressed NA NA frameshift RAD52 NA B4GALNT3 NA Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE WNK1--AC007207.1/CCND2-AS1 1.94863063009368 NA NA 2.35256618193704 no change NA NA differentially expressed frameshift WNK1 NA AC007207.1 CCND2-AS1 Kinase, Kinase NA NA Oncogene NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE CCND2--TSPAN9 10.5051335938283 1.93250949774353 NA NA differentially expressed no change NA NA frameshift CCND2 NA TSPAN9 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE PARP11--ERC1 4.92179106477613 3.38205052943934 NA NA differentially expressed differentially expressed NA NA frameshift PARP11 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE MYCN--CCND2 17.0922306769188 10.5051335938283 NA NA differentially expressed differentially expressed NA NA frameshift MYCN NA CCND2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE ERC1--AC007207.1/CCND2-AS1 3.38205052943934 NA NA 2.35256618193704 differentially expressed NA NA differentially expressed frameshift ERC1 NA AC007207.1 CCND2-AS1 CosmicCensus, Oncogene NA NA Oncogene NA ARRIBA 1 PT_XA98HG1C -BS_W644VEVE PARP11--AC007207.1/CCND2-AS1 4.92179106477613 NA NA 2.35256618193704 differentially expressed NA NA differentially expressed frameshift PARP11 NA AC007207.1 CCND2-AS1 NA NA NA Oncogene NA ARRIBA 1 PT_XA98HG1C -BS_W6AC5J3C FGFR2--CTNNA3 2.08959768666655 4.87582943065148 NA NA differentially expressed differentially expressed NA NA in-frame FGFR2 NA CTNNA3 NA Kinase, CosmicCensus, Oncogene, Kinase TumorSuppressorGene NA NA NA ARRIBA 1 PT_16EJ7BZ9 -BS_W6AC5J3C USH2A--USH2A/ESRRG 1.30681957638819 1.30681957638819 NA 2.61498803166866 no change no change NA differentially expressed frameshift USH2A NA USH2A ESRRG NA NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_16EJ7BZ9 -BS_W7FP2G3F RFX4--RFX4 0.769637987785003 0.769637987785003 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_GERCQ0JG -BS_W7FP2G3F BRINP1--BRINP1 -0.861619546184219 -0.861619546184219 NA NA no change no change NA NA frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_GERCQ0JG -BS_W7MFJZ5A DDX58--GLDC 1.8686701422294 6.82971797211736 NA NA no change differentially expressed NA NA frameshift DDX58 NA GLDC NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_C5FKRB1P -BS_W7MFJZ5A ZMYND19--GLIS3 -0.579781392219945 2.74765237366769 NA NA no change differentially expressed NA NA frameshift ZMYND19 NA GLIS3 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_C5FKRB1P -BS_W7MFJZ5A ASPH--LRBA -0.256409801367408 0.726588291805817 NA NA no change no change NA NA in-frame ASPH NA LRBA NA NA Oncogene NA NA NA ARRIBA 1 PT_C5FKRB1P -BS_W7MFJZ5A MLLT3--PSIP1/AL513423.1 1.07075940228733 1.13045273311222 NA NA no change no change NA NA frameshift MLLT3 NA PSIP1 AL513423.1 CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_C5FKRB1P -BS_W80TJC27 AKAP8L--RAB1B -1.73481795470197 -1.35889707065891 NA NA no change no change NA NA frameshift AKAP8L NA RAB1B NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_R6WWH1QX -BS_W80TJC27 C11orf95--RELA 3.38576384730861 3.80137213701998 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_R6WWH1QX -BS_W97QQYKQ ERC2--ERC2 0.676256637087827 0.676256637087827 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GKWWWJ0X -BS_W97QQYKQ KIAA1549--BRAF 3.90159534181415 1.52000343071927 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_GKWWWJ0X -BS_W97QQYKQ JAK2--JAK2 2.11096079536158 2.11096079536158 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_GKWWWJ0X -BS_W97QQYKQ PLEKHA8--PLEKHA8 0.496792926558309 0.496792926558309 NA NA no change no change NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GKWWWJ0X -BS_W9N9844Q MMP16--CNBD1 11.2817703510469 0.250297252609979 NA NA differentially expressed no change NA NA frameshift MMP16 NA CNBD1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_3CHB9PK5 -BS_WAXJY4XQ GRIK2--NKAIN2 0.106863103581769 -2.83914623950803 NA NA no change differentially expressed NA NA frameshift GRIK2 NA NKAIN2 NA NA Oncogene NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_WAXJY4XQ VCAN--FBXL17 3.93605530495433 1.7317230541867 NA NA differentially expressed no change NA NA frameshift VCAN NA FBXL17 NA Oncogene NA NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_WAXJY4XQ KLHL7--RNF216 1.98469732169392 2.68410142488556 NA NA no change differentially expressed NA NA frameshift KLHL7 NA RNF216 NA NA Oncogene NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_WCRKYV0T RALGDS--AL807752.7 -1.04269698906069 NA NA NA no change NA NA NA frameshift RALGDS NA AL807752.7 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_GVDMG7KC -BS_WCRKYV0T ERC2--ERC2 2.97675733791211 2.97675733791211 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GVDMG7KC -BS_WCRKYV0T CYB5R4--CYB5R4 0.699983675568324 0.699983675568324 NA NA no change no change NA NA frameshift CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GVDMG7KC -BS_WCRKYV0T RALGDS--LCNL1 -1.04269698906069 -1.94366889962462 NA NA no change no change NA NA frameshift RALGDS NA LCNL1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_GVDMG7KC -BS_WCRKYV0T MYT1L--MYT1L 1.56965707239042 1.56965707239042 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_GVDMG7KC -BS_WCRKYV0T RGS7--RGS7 0.354547220838591 0.354547220838591 NA NA no change no change NA NA frameshift RGS7 NA RGS7 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_GVDMG7KC -BS_WCRKYV0T KCNH1--KCNH1 4.09600660418697 4.09600660418697 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GVDMG7KC -BS_WCRKYV0T CNTN4--CNTN4 1.91660250378006 1.91660250378006 NA NA no change no change NA NA in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GVDMG7KC -BS_WCRKYV0T KCNH1--AL590132.1 4.09600660418697 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_GVDMG7KC -BS_WCRKYV0T AL590132.1--KCNH1 NA 4.09600660418697 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_GVDMG7KC -BS_WCRKYV0T AL590132.1--KCNH1 NA 4.09600660418697 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_GVDMG7KC -BS_WCRKYV0T CSMD3--CSMD3 2.02507492041003 2.02507492041003 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_GVDMG7KC -BS_WCRKYV0T POU6F2--POU6F2 3.6850883812966 3.6850883812966 NA NA differentially expressed differentially expressed NA NA frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GVDMG7KC -BS_WCRKYV0T KCNH1--AL590132.1 4.09600660418697 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_GVDMG7KC -BS_WCRKYV0T DCLK2--DCLK2 0.212574443794768 0.212574443794768 NA NA no change no change NA NA frameshift DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_GVDMG7KC -BS_WFD0GE5X MYO3A--MYO3A 6.58798914393632 6.58798914393632 NA NA differentially expressed differentially expressed NA NA frameshift MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_WKNKNYHH -BS_WFD0GE5X RFX4--RFX4 3.22431901768294 3.22431901768294 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_WKNKNYHH -BS_WG203ECV FADS2--CD74 3.03164844818859 2.80152497794984 NA NA differentially expressed differentially expressed NA NA frameshift FADS2 NA CD74 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_962TCBVR -BS_WG203ECV PSAP--RGMA 1.41788120801224 2.51832484174345 NA NA no change differentially expressed NA NA frameshift PSAP NA RGMA NA Oncogene NA NA NA NA ARRIBA 1 PT_962TCBVR -BS_WG203ECV KIAA1549--BRAF 4.24628165867839 1.20116970208134 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_962TCBVR -BS_WGK8ZMVA KCNH1--AL590132.1 0.942426579237604 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DNAJYFZT -BS_WGK8ZMVA AL590132.1--KCNH1 NA 0.942426579237604 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DNAJYFZT -BS_WGK8ZMVA ERC2--ERC2 0.218988545153557 0.218988545153557 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DNAJYFZT -BS_WGK8ZMVA AL590132.1--KCNH1 NA 0.942426579237604 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DNAJYFZT -BS_WGK8ZMVA BCOR--EP300 7.45038655555892 3.92660163520615 NA NA differentially expressed differentially expressed NA NA frameshift BCOR NA EP300 NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_DNAJYFZT -BS_WGK8ZMVA KCNH1--KCNH1 0.942426579237604 0.942426579237604 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DNAJYFZT -BS_WGK8ZMVA ASXL1--SNRPN 0.789697778244528 -1.88600078327376 NA NA no change no change NA NA frameshift ASXL1 NA SNRPN NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_DNAJYFZT -BS_WGK8ZMVA EP300--BCOR 3.92660163520615 7.45038655555892 NA NA differentially expressed differentially expressed NA NA in-frame EP300 NA BCOR NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_DNAJYFZT -BS_WGK8ZMVA KCNH1--AL590132.1 0.942426579237604 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DNAJYFZT -BS_WH5HDE0A JAK2--JAK2 3.11240462097496 3.11240462097496 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_H3WWDMW9 -BS_WH8G4VFB KMT2C--TSC22D4 3.46682223730518 -1.96435152007621 NA NA differentially expressed no change NA NA frameshift KMT2C NA TSC22D4 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_R4T1V1K4 -BS_WH8G4VFB CUX1--SSPO 0.591245833292167 0.413209263116594 NA NA no change no change NA NA frameshift CUX1 NA SSPO NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_R4T1V1K4 -BS_WH8G4VFB KMT2C--C7orf61 3.46682223730518 2.50338131682072 NA NA differentially expressed differentially expressed NA NA frameshift KMT2C NA C7orf61 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_R4T1V1K4 -BS_WH8G4VFB CREB3L2--TSC22D4 4.31842399486367 -1.96435152007621 NA NA differentially expressed no change NA NA in-frame CREB3L2 NA TSC22D4 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_R4T1V1K4 -BS_WH8G4VFB KMT2C--TSC22D4 3.46682223730518 -1.96435152007621 NA NA differentially expressed no change NA NA in-frame KMT2C NA TSC22D4 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_R4T1V1K4 -BS_WH8G4VFB CABIN1--MIF 1.23060719422623 1.67499953309725 NA NA no change no change NA NA in-frame CABIN1 NA MIF NA NA Oncogene NA NA NA ARRIBA 1 PT_R4T1V1K4 -BS_WH8G4VFB GIGYF1--SND1/MIR129-1 0.102158870803411 1.62580971732056 NA NA no change no change NA NA frameshift GIGYF1 NA SND1 MIR129-1 NA CosmicCensus NA TumorSuppressorGene NA ARRIBA 1 PT_R4T1V1K4 -BS_WH8G4VFB CUX1--SSPO 0.591245833292167 0.413209263116594 NA NA no change no change NA NA in-frame CUX1 NA SSPO NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_R4T1V1K4 -BS_WH8G4VFB TCAF1--CUX1 -0.367047876924794 0.591245833292167 NA NA no change no change NA NA frameshift TCAF1 NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_R4T1V1K4 -BS_WJ9H4NZZ KMT2C--PTPRS 4.34558336154571 3.72590624193454 NA NA differentially expressed differentially expressed NA NA in-frame KMT2C NA PTPRS NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_WJ9H4NZZ GRIK2--NKAIN2 0.534526824583529 -2.08866710687181 NA NA no change differentially expressed NA NA frameshift GRIK2 NA NKAIN2 NA NA Oncogene NA NA NA ARRIBA 1 PT_8GN3TQRM -BS_WJGFDRWK EWSR1--FLI1 -0.223271325147637 3.46847223869888 NA NA no change differentially expressed NA NA in-frame EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_PJFTMJ6H -BS_WKESC3XN WASF3--DNAH9 -2.14371013331988 1.07003272803922 NA NA differentially expressed no change NA NA in-frame WASF3 NA DNAH9 NA NA Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN RSF1--CFH/CFHR3 4.55836929647326 -0.458018519525433 NA 9.61740418084933 differentially expressed no change NA differentially expressed frameshift RSF1 NA CFH CFHR3 Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN ZNF827--LSM6 2.69881300275546 -0.316898375172256 NA NA differentially expressed no change NA NA frameshift ZNF827 NA LSM6 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN RBM34--AL391645.1 0.444017071585245 NA NA NA no change NA NA NA frameshift RBM34 NA AL391645.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN VPS53--MIS12 1.36897755300091 0.0622539068482417 NA NA no change no change NA NA frameshift VPS53 NA MIS12 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN ZBED6--CENPF 5.37576392629314 3.50109377747469 NA NA differentially expressed differentially expressed NA NA in-frame ZBED6 NA CENPF NA TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN UBE2J2--HFM1/CDC7 2.81541198317728 -0.532310559227602 NA -0.00530015929314185 differentially expressed no change NA no change frameshift UBE2J2 NA HFM1 CDC7 NA NA NA Kinase, Kinase NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN ZC3H11A--CENPF 0.182420663067193 3.50109377747469 NA NA no change differentially expressed NA NA in-frame ZC3H11A NA CENPF NA NA Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN CENPF--RD3/AC105275.1/SLC30A1 3.50109377747469 -0.273584838250086 NA NA differentially expressed no change NA NA frameshift CENPF NA RD3 AC105275.1 Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN STK32B--IFITM9P 4.54515871028097 35.0114871163029 NA NA differentially expressed differentially expressed NA NA frameshift STK32B NA IFITM9P NA Kinase NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN DENND1B--DPT 2.37663792079585 -0.957371397168884 NA NA differentially expressed no change NA NA frameshift DENND1B NA DPT NA NA Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN PTPN12--PLXNA4 3.55161676444223 1.29366870885478 NA NA differentially expressed no change NA NA in-frame PTPN12 NA PLXNA4 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN PTPN12--PLXNA4 3.55161676444223 1.29366870885478 NA NA differentially expressed no change NA NA frameshift PTPN12 NA PLXNA4 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN ABR--WASF3 0.283117959223922 -2.14371013331988 NA NA no change differentially expressed NA NA frameshift ABR NA WASF3 NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN SRGAP2--KIF14 1.65492666227548 19.1846435501321 NA NA no change differentially expressed NA NA frameshift SRGAP2 NA KIF14 NA NA Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN MAPKAPK2--PTCHD3/RAB18 2.41944844785327 7.68102166399376 NA 0.126224392794894 differentially expressed differentially expressed NA no change frameshift MAPKAPK2 NA PTCHD3 RAB18 Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN CRK--MICU2 1.84013903122716 -1.61128859186814 NA NA no change no change NA NA in-frame CRK NA MICU2 NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN RPAIN--MINK1 0.530965646460985 -0.0273076124663867 NA NA no change no change NA NA in-frame RPAIN NA MINK1 NA NA Kinase NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WKESC3XN KIF14--SRGAP2 19.1846435501321 1.65492666227548 NA NA differentially expressed no change NA NA in-frame KIF14 NA SRGAP2 NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 -BS_WMEHNDSK ASAP1--NDRG1 5.994075986954 2.82062245643953 NA NA differentially expressed differentially expressed NA NA in-frame ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_B54PH840 -BS_WMEHNDSK SQLE--PVT1 5.76068331541943 7.60148413720297 NA NA differentially expressed differentially expressed NA NA frameshift SQLE NA PVT1 NA NA Oncogene NA NA NA ARRIBA 1 PT_B54PH840 -BS_WMEHNDSK SQLE--TRIB1/AC091114.1 5.76068331541943 10.1542563841137 NA NA differentially expressed differentially expressed NA NA frameshift SQLE NA TRIB1 AC091114.1 NA Kinase NA NA NA ARRIBA 1 PT_B54PH840 -BS_WMEHNDSK TATDN1--AC105180.1/ZFAT 8.61895432121722 NA NA 15.2368026122682 differentially expressed NA NA differentially expressed frameshift TATDN1 NA AC105180.1 ZFAT NA NA NA TranscriptionFactor NA ARRIBA 1 PT_B54PH840 -BS_WMEHNDSK MTSS1--ZFAT 5.02153125311621 15.2368026122682 NA NA differentially expressed differentially expressed NA NA frameshift MTSS1 NA ZFAT NA TumorSuppressorGene TranscriptionFactor NA NA NA ARRIBA 1 PT_B54PH840 -BS_WMEHNDSK EFR3A--HNF4G/RNU2-54P 4.13607860295738 -1.13175192677142 NA NA differentially expressed no change NA NA frameshift EFR3A NA HNF4G RNU2-54P NA TranscriptionFactor NA NA NA ARRIBA 1 PT_B54PH840 -BS_WMEHNDSK RNF139--NSMCE2 4.86623926403561 10.1778237757844 NA NA differentially expressed differentially expressed NA NA in-frame RNF139 NA NSMCE2 NA Oncogene NA NA NA NA ARRIBA 1 PT_B54PH840 -BS_WMEHNDSK MTSS1--CASC8 5.02153125311621 37.972061706893 NA NA differentially expressed differentially expressed NA NA frameshift MTSS1 NA CASC8 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_B54PH840 -BS_WMEHNDSK ASAP1--NDRG1 5.994075986954 2.82062245643953 NA NA differentially expressed differentially expressed NA NA frameshift ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_B54PH840 -BS_WMEHNDSK ERBB4--ERBB4 -1.08239729264121 -1.08239729264121 NA NA no change no change NA NA frameshift ERBB4 NA ERBB4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_B54PH840 -BS_WMEHNDSK MTSS1--ZFAT 5.02153125311621 15.2368026122682 NA NA differentially expressed differentially expressed NA NA in-frame MTSS1 NA ZFAT NA TumorSuppressorGene TranscriptionFactor NA NA NA ARRIBA 1 PT_B54PH840 -BS_WMEHNDSK ZFAT--AC079098.1/AC013546.1 15.2368026122682 NA NA NA differentially expressed NA NA NA frameshift ZFAT NA AC079098.1 AC013546.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_B54PH840 -BS_WRQHPSXQ PATJ--PATJ NA NA NA NA NA NA NA NA in-frame PATJ NA PATJ NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_4159VCJY -BS_WRQHPSXQ PLCE1--PIPSL/PLCE1 4.66603109864836 3.33774426233977 NA 4.66603109864836 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_4159VCJY -BS_WRQHPSXQ BRINP1--BRINP1 0.466823371814577 0.466823371814577 NA NA no change no change NA NA frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_4159VCJY -BS_WSQMAA33 TAF1--AL590762.3/AL590762.2 4.8570149885607 NA NA NA differentially expressed NA NA NA frameshift TAF1 NA AL590762.3 AL590762.2 Kinase NA NA NA NA ARRIBA 1 PT_92YX7KK9 -BS_WSQMAA33 UVRAG--UVRAG 2.2974060263153 2.2974060263153 NA NA differentially expressed differentially expressed NA NA frameshift UVRAG NA UVRAG NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_92YX7KK9 -BS_WSQMAA33 SNAPC3--RPL7P33/SNAPC3 2.10034611679263 -0.0780591310994776 NA 2.10034611679263 differentially expressed no change NA differentially expressed frameshift SNAPC3 NA RPL7P33 SNAPC3 Oncogene NA NA Oncogene NA ARRIBA 1 PT_92YX7KK9 -BS_WSQMAA33 OBSCN--OBSCN -0.888759011518853 -0.888759011518853 NA NA no change no change NA NA in-frame OBSCN NA OBSCN NA Kinase, Oncogene, Kinase Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_92YX7KK9 -BS_WSQMAA33 TEX11--NONO 44.7839891124191 3.15147350034207 NA NA differentially expressed differentially expressed NA NA in-frame TEX11 NA NONO NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_92YX7KK9 -BS_WVW3W6ZB PLCE1--PIPSL/PLCE1 9.15402486412951 7.39103776026252 NA 9.15402486412951 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_M1RYN7B0 -BS_WYERXS4G MAML2--NHSL2 5.64671751725929 -0.269153971079075 NA NA differentially expressed no change NA NA frameshift MAML2 NA NHSL2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_46F28BFH -BS_WYERXS4G YAP1--MAML2 3.01484740389624 5.64671751725929 NA NA differentially expressed differentially expressed NA NA in-frame YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_46F28BFH -BS_WYG77VVP AL590132.1--KCNH1 NA 2.76380173850783 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DH8A0SNQ -BS_WYG77VVP KCNH1--KCNH1 2.76380173850783 2.76380173850783 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DH8A0SNQ -BS_WYG77VVP KCNH1--AL590132.1 2.76380173850783 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DH8A0SNQ -BS_WYG77VVP KCNH1--AL590132.1 2.76380173850783 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DH8A0SNQ -BS_WYG77VVP AL590132.1--KCNH1 NA 2.76380173850783 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DH8A0SNQ -BS_X0F9AYEC ERC2--ERC2 0.26780453053356 0.26780453053356 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_Y8HSH496 -BS_X0F9AYEC MTSS1--MTSS1 2.16977478202785 2.16977478202785 NA NA differentially expressed differentially expressed NA NA frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y8HSH496 -BS_X0F9AYEC CSMD3--CSMD3 0.52175028895983 0.52175028895983 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_Y8HSH496 -BS_X0XXN9BK FOXO3--AL356967.1/HACE1 0.0643341978823225 NA NA -1.33266693427451 no change NA NA no change frameshift FOXO3 NA AL356967.1 HACE1 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA TumorSuppressorGene NA ARRIBA 1 PT_Z4BF2NSB -BS_X0XXN9BK ASAP2--TRIB2/AC064875.1 0.818366500299653 2.46909600584101 NA NA no change differentially expressed NA NA frameshift ASAP2 NA TRIB2 AC064875.1 NA Kinase NA NA NA ARRIBA 1 PT_Z4BF2NSB -BS_X0XXN9BK PTPRT--NLGN1 -0.468068521274688 -1.24932337554958 NA NA no change no change NA NA frameshift PTPRT NA NLGN1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_Z4BF2NSB -BS_X0XXN9BK DIP2A--DUX4L2/DUX4 0.228721585818245 NA NA 0.291606954499814 no change NA NA no change frameshift DIP2A NA DUX4L2 DUX4 NA NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_Z4BF2NSB -BS_X0XXN9BK FOXO3--NPM1P10/AL356967.1 0.0643341978823225 34.8277462670523 NA NA no change differentially expressed NA NA frameshift FOXO3 NA NPM1P10 AL356967.1 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4BF2NSB -BS_X0XXN9BK ZNF704--AC036214.3 2.18845526039285 NA NA NA differentially expressed NA NA NA in-frame ZNF704 NA AC036214.3 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4BF2NSB -BS_X0XXN9BK PRKCE--LINC01862/AC243312.1 -0.452974141369971 NA NA NA no change NA NA NA frameshift PRKCE NA LINC01862 AC243312.1 TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_Z4BF2NSB -BS_X0XXN9BK ZNF385D--CNTN3 0.25944144944878 -0.740924522808771 NA NA no change no change NA NA frameshift ZNF385D NA CNTN3 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4BF2NSB -BS_X0XXN9BK ABL2--ACBD6 1.73023327255976 1.86915542177134 NA NA no change no change NA NA frameshift ABL2 NA ACBD6 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_Z4BF2NSB -BS_X16PENSA RFX4--RFX4 1.20631761767036 1.20631761767036 NA NA no change no change NA NA in-frame RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_50ZFWMZE -BS_X16PENSA KIAA1549--BRAF 4.35929805461543 1.50567596420849 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_50ZFWMZE -BS_X16PENSA PLCE1--PIPSL/PLCE1 5.19958493499777 3.33774426233977 NA 5.19958493499777 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_50ZFWMZE -BS_X23724NJ BRINP1--BRINP1 -1.11140191666289 -1.11140191666289 NA NA no change no change NA NA frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y8RNS9JE -BS_X23724NJ SEPT9--SRP68 4.09206439450249 1.37978826633059 NA NA differentially expressed no change NA NA frameshift SEPT9 NA SRP68 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_Y8RNS9JE -BS_X23724NJ CLU--AC124242.1/NAT1 -0.60819802989195 NA NA -0.0905332487124077 no change NA NA no change frameshift CLU NA AC124242.1 NAT1 TumorSuppressorGene, Oncogene NA NA Oncogene NA ARRIBA 1 PT_Y8RNS9JE -BS_X23724NJ VEZT--ANKS1B 1.66788966807224 -1.07099389526786 NA NA no change no change NA NA in-frame VEZT NA ANKS1B NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_Y8RNS9JE -BS_X23724NJ SEPT9--SRP68 4.09206439450249 1.37978826633059 NA NA differentially expressed no change NA NA in-frame SEPT9 NA SRP68 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_Y8RNS9JE -BS_X23724NJ GALK2--AC114781.4/HELQ 2.23347599080902 NA NA 3.18701820729563 differentially expressed NA NA differentially expressed frameshift GALK2 NA AC114781.4 HELQ Kinase NA NA NA NA ARRIBA 1 PT_Y8RNS9JE -BS_X23724NJ S100B--SLC10A2/LINC01309 -0.415797815105481 -0.190765074785473 NA -0.0625293374938759 no change no change NA no change frameshift S100B NA SLC10A2 LINC01309 Oncogene NA NA NA NA ARRIBA 1 PT_Y8RNS9JE -BS_X23724NJ HMGA2--DTX1 42.3761169273448 1.52902513191634 NA NA differentially expressed no change NA NA frameshift HMGA2 NA DTX1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Y8RNS9JE -BS_X23724NJ CDH20--CDH20 -1.8394199482446 -1.8394199482446 NA NA no change no change NA NA frameshift CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_Y8RNS9JE -BS_X2QTK3QD NF2--ADCY8 -2.60925502926917 -3.76065874824775 NA NA differentially expressed differentially expressed NA NA frameshift NF2 NA ADCY8 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_T2M1338J -BS_X2QTK3QD PLCE1--PIPSL/PLCE1 7.07227228240522 4.38248525538312 NA 7.07227228240522 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_T2M1338J -BS_X2QTK3QD GSE1--FAM19A5 1.4668847124315 -3.43431085305085 NA NA no change differentially expressed NA NA frameshift GSE1 NA FAM19A5 NA Oncogene NA NA NA NA ARRIBA 1 PT_T2M1338J -BS_X2QTK3QD NSD1--SLIT3 3.63643417255857 2.45492634152628 NA NA differentially expressed differentially expressed NA NA frameshift NSD1 NA SLIT3 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_T2M1338J -BS_X2QTK3QD NF2--ADCY8/AC087341.1 -2.60925502926917 -3.76065874824775 NA NA differentially expressed differentially expressed NA NA frameshift NF2 NA ADCY8 AC087341.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_T2M1338J -BS_X4DD4KSZ REV3L--FYN 0.818488625428732 1.34714954441684 NA NA no change no change NA NA frameshift REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_A06JR0E5 -BS_X67GTEM6 ECT2L--ECT2L 5.9312163167896 5.9312163167896 NA NA differentially expressed differentially expressed NA NA frameshift ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_F9G665B1 -BS_X67GTEM6 RFX4--RFX4 2.86310673645846 2.86310673645846 NA NA differentially expressed differentially expressed NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_F9G665B1 -BS_X9EGD530 KIAA1549--BRAF 4.45218564032844 0.616654347835318 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_YGN06RPZ -BS_XBQZYS8G BCL10--FEZ2 3.41365940041512 -1.24155682970545 NA NA differentially expressed no change NA NA frameshift BCL10 NA FEZ2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_W7FK539G -BS_XBQZYS8G BCL10--CRIM1 3.41365940041512 2.07931047777373 NA NA differentially expressed differentially expressed NA NA frameshift BCL10 NA CRIM1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_W7FK539G -BS_XBQZYS8G MELK--MELK 38.3965100943052 38.3965100943052 NA NA differentially expressed differentially expressed NA NA frameshift MELK NA MELK NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_W7FK539G -BS_XF0ZX2B3 NEK10--NEK10 2.38712282114093 2.38712282114093 NA NA differentially expressed differentially expressed NA NA frameshift NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_GAM3E6M3 -BS_XF0ZX2B3 C11orf95--RELA 2.79144411942699 3.17999835764806 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GAM3E6M3 -BS_XG0DBWVT SNRNP70--AXL 0.22047424686926 2.93752849008954 NA NA no change differentially expressed NA NA in-frame SNRNP70 NA AXL NA NA Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_Y660CKCB -BS_XGDPK33A NUP160--AC023232.1/PTPRJ 2.38476051665319 NA NA 4.91581176082518 differentially expressed NA NA differentially expressed frameshift NUP160 NA AC023232.1 PTPRJ NA NA NA TumorSuppressorGene, Oncogene NA ARRIBA 1 PT_G16VK7FR -BS_XGDPK33A BCL2L1--SMDT1 1.4383023741181 -0.415193101001129 NA NA no change no change NA NA frameshift BCL2L1 NA SMDT1 NA Oncogene NA NA NA NA ARRIBA 1 PT_G16VK7FR -BS_XGDPK33A NFATC1--SALL3 1.54640967797428 1.8961909131379 NA NA no change no change NA NA in-frame NFATC1 NA SALL3 NA Oncogene, TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_G16VK7FR -BS_XGSA3GQE KIAA1549--BRAF 4.67498549548679 1.8760201058237 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_HV6C0T34 -BS_XJTW0P8P CYB5R4--CYB5R4 0.83209862433368 0.83209862433368 NA NA no change no change NA NA frameshift CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_6DB7B9WV -BS_XJTW0P8P ERC2--ERC2 2.69920467541433 2.69920467541433 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_6DB7B9WV -BS_XJTW0P8P JAK2--JAK2 1.50846115183583 1.50846115183583 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_6DB7B9WV -BS_XJTW0P8P STK31--STK31 3.74252170661443 3.74252170661443 NA NA differentially expressed differentially expressed NA NA in-frame STK31 NA STK31 NA Kinase Kinase NA NA NA ARRIBA 1 PT_6DB7B9WV -BS_XKKB4MZV KIAA1549--BRAF 5.41135666626338 1.52713025425626 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_RV0RDER2 -BS_XZM79E42 MCF2L2--WWTR1 -1.88891338206098 2.29093447545152 NA NA no change differentially expressed NA NA frameshift MCF2L2 NA WWTR1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_2JDDX6TJ -BS_XZM79E42 RIOK3--ABAT 0.0189911345178307 -0.406108959879449 NA NA no change no change NA NA frameshift RIOK3 NA ABAT NA Kinase NA NA NA NA ARRIBA 1 PT_2JDDX6TJ -BS_XZM79E42 RIOK3--TMEM186 0.0189911345178307 1.21886058272115 NA NA no change no change NA NA frameshift RIOK3 NA TMEM186 NA Kinase NA NA NA NA ARRIBA 1 PT_2JDDX6TJ -BS_XZM79E42 RIOK3--TMEM186 0.0189911345178307 1.21886058272115 NA NA no change no change NA NA in-frame RIOK3 NA TMEM186 NA Kinase NA NA NA NA ARRIBA 1 PT_2JDDX6TJ -BS_XZM79E42 WWTR1--LHPP 2.29093447545152 -1.53057729746997 NA NA differentially expressed no change NA NA in-frame WWTR1 NA LHPP NA CosmicCensus NA NA NA NA ARRIBA 1 PT_2JDDX6TJ -BS_Y0PCBNJV KIAA1549--BRAF 5.2490338395666 1.94579964966518 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_S2CXXZCF -BS_Y3G1X98S ZBTB7B--UBAP2L 3.3323858918427 2.17859573419883 NA NA differentially expressed differentially expressed NA NA frameshift ZBTB7B NA UBAP2L NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7M2PGCBV -BS_Y3G1X98S EHMT1--UNC79 2.17570862235408 -1.54498087483262 NA NA differentially expressed no change NA NA in-frame EHMT1 NA UNC79 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7M2PGCBV -BS_Y3G1X98S TPM3--PKLR 1.2865854544713 0.121300581170092 NA NA no change no change NA NA in-frame TPM3 NA PKLR NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_7M2PGCBV -BS_Y3G1X98S ZBTB16--FXYD6 4.77936016429413 -1.67749031366587 NA NA differentially expressed no change NA NA in-frame ZBTB16 NA FXYD6 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7M2PGCBV -BS_Y3G1X98S ZBTB16--FXYD6-FXYD2 4.77936016429413 0.0277949120762977 NA NA differentially expressed no change NA NA frameshift ZBTB16 NA FXYD6-FXYD2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7M2PGCBV -BS_Y3G1X98S RNF216--VPS41 2.20036214661756 2.21538850415991 NA NA differentially expressed differentially expressed NA NA in-frame RNF216 NA VPS41 NA Oncogene NA NA NA NA ARRIBA 1 PT_7M2PGCBV -BS_Y3G1X98S ST6GAL1--ROPN1 3.36533063177152 5.34653614518006 NA NA differentially expressed differentially expressed NA NA in-frame ST6GAL1 NA ROPN1 NA Oncogene NA NA NA NA ARRIBA 1 PT_7M2PGCBV -BS_Y3G1X98S VCL--MIR34AHG 4.96070894703337 NA NA NA differentially expressed NA NA NA frameshift VCL NA MIR34AHG NA Oncogene NA NA NA NA ARRIBA 1 PT_7M2PGCBV -BS_Y7F9E2E9 FPGT-TNNI3K--FPGT-TNNI3K 2.2103375188701 2.2103375188701 NA NA differentially expressed differentially expressed NA NA frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_ZZTQQVCT -BS_Y7F9E2E9 PLEKHA8--PLEKHA8 0.561027048826701 0.561027048826701 NA NA no change no change NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZZTQQVCT -BS_Y7F9E2E9 ERC2--ERC2 -0.208885958500723 -0.208885958500723 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZZTQQVCT -BS_Y8D1F5WW GK5--ATR 0.912904235309182 -0.77152272865446 NA NA no change no change NA NA frameshift GK5 NA ATR NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_ABMAQYY2 -BS_Y8D1F5WW PCDH17--FRY 11.039879145096 -0.418686008386891 NA NA differentially expressed no change NA NA frameshift PCDH17 NA FRY NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_ABMAQYY2 -BS_Y8D1F5WW ST18--ST18 3.32847731548142 3.32847731548142 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ABMAQYY2 -BS_YB07VF1X RNF213--HSPG2 3.41726888643104 7.93834815266123 NA NA differentially expressed differentially expressed NA NA frameshift RNF213 NA HSPG2 NA CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_HFQNKP5X -BS_YB07VF1X DENND1A--TFAP4 0.328106568521772 0.894124524781412 NA NA no change no change NA NA frameshift DENND1A NA TFAP4 NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_HFQNKP5X -BS_YB07VF1X PTK2--AARD/SLC30A8 0.469475321509506 -0.465260465825876 NA -0.560109160459538 no change no change NA no change frameshift PTK2 NA AARD SLC30A8 Kinase NA NA NA NA ARRIBA 1 PT_HFQNKP5X -BS_YB07VF1X AUTS2--ZNF268 -0.208583506680775 3.97329785432868 NA NA no change differentially expressed NA NA frameshift AUTS2 NA ZNF268 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_HFQNKP5X -BS_YB2RXRHT AL590132.1--KCNH1 NA 3.25714229475116 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_H45M7M2T -BS_YB2RXRHT JAZF1--DPY19L2P3 1.23702791157207 -0.0880387892640659 NA NA no change no change NA NA frameshift JAZF1 NA DPY19L2P3 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_H45M7M2T -BS_YB2RXRHT MYT1L--MYT1L 0.877978169645164 0.877978169645164 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_H45M7M2T -BS_YB2RXRHT DCLK2--DCLK2 1.22751115793762 1.22751115793762 NA NA no change no change NA NA frameshift DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_H45M7M2T -BS_YB2RXRHT TAX1BP1--BRAF 0.660372374193481 2.32818000980563 NA NA no change differentially expressed NA NA in-frame TAX1BP1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_H45M7M2T -BS_YB2RXRHT CAPZA2--BRAF 1.64304374863556 2.32818000980563 NA NA no change differentially expressed NA NA frameshift CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_H45M7M2T -BS_YB2RXRHT KCNH1--KCNH1 3.25714229475116 3.25714229475116 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_H45M7M2T -BS_YB2RXRHT KCNH1--AL590132.1 3.25714229475116 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_H45M7M2T -BS_YB2RXRHT ERC2--ERC2 2.64949082134707 2.64949082134707 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_H45M7M2T -BS_YB2RXRHT SND1--LHFPL3 0.919816755823727 2.36041102225372 NA NA no change differentially expressed NA NA frameshift SND1 NA LHFPL3 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_H45M7M2T -BS_YB2RXRHT KCNH1--AL590132.1 3.25714229475116 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_H45M7M2T -BS_YB2RXRHT AL590132.1--KCNH1 NA 3.25714229475116 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_H45M7M2T -BS_YB2RXRHT CSMD3--CSMD3 2.06131692114501 2.06131692114501 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_H45M7M2T -BS_YB2RXRHT RFX4--RFX4 0.762167683836575 0.762167683836575 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_H45M7M2T -BS_YBJBSRHV SPRED1--NPY1R 1.7710318975767 -0.229766081371398 NA NA no change no change NA NA frameshift SPRED1 NA NPY1R NA NA Oncogene NA NA NA ARRIBA 1 PT_9CSZBV2P -BS_YBJBSRHV ARHGAP35--AP2S1/ARHGAP35 2.79539173053587 1.27622795507178 NA 2.79539173053587 differentially expressed no change NA differentially expressed frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_9CSZBV2P -BS_YBJBSRHV ZC4H2--FOXR2 -4.16785796253817 435.341252972891 NA NA differentially expressed differentially expressed NA NA frameshift ZC4H2 NA FOXR2 NA NA TranscriptionFactor, Oncogene NA NA NA ARRIBA 1 PT_9CSZBV2P -BS_YBJBSRHV UNC79--UNC79 0.48177251220274 0.48177251220274 NA NA no change no change NA NA frameshift UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_9CSZBV2P -BS_YBJBSRHV KIAA1191--SOX30 -0.766879780174756 28.3022598104317 NA NA no change differentially expressed NA NA frameshift KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_9CSZBV2P -BS_YBJBSRHV KIAA1191--SOX30 -0.766879780174756 28.3022598104317 NA NA no change differentially expressed NA NA in-frame KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_9CSZBV2P -BS_YBJBSRHV ZC4H2--AL627224.1/FOXR2 -4.16785796253817 NA NA 435.341252972891 differentially expressed NA NA differentially expressed frameshift ZC4H2 NA AL627224.1 FOXR2 NA NA NA TranscriptionFactor, Oncogene NA ARRIBA 1 PT_9CSZBV2P -BS_YDEVMD24 ZNF141--ATM 0.0553007237215956 1.6405152592164 NA NA no change no change NA NA frameshift ZNF141 NA ATM NA TranscriptionFactor Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_NK8A49X5 -BS_YEQVW4ND KANK1--NTRK2 1.80047148360201 0.779581255480132 NA NA no change no change NA NA in-frame KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA ARRIBA 1 PT_NA8NZ0BN -BS_YEQVW4ND ERC2--ERC2 1.9638840746652 1.9638840746652 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NA8NZ0BN -BS_YEQVW4ND BACE2--ZNF8 1.65858622894666 1.3410637801528 NA NA no change no change NA NA frameshift BACE2 NA ZNF8 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_NA8NZ0BN -BS_YEQVW4ND ABL1--PTTG1 0.952659781428832 0.595917469186222 NA NA no change no change NA NA frameshift ABL1 NA PTTG1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA ARRIBA 1 PT_NA8NZ0BN -BS_YEW22W35 RB1--LINC01881 0.0653831716591596 NA NA NA no change NA NA NA frameshift RB1 NA LINC01881 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9N0SR1D7 -BS_YMAJC22S AL590132.1--KCNH1 NA 2.60350383149347 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_ZMKMKCFQ -BS_YMAJC22S AL590132.1--KCNH1 NA 2.60350383149347 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_ZMKMKCFQ -BS_YMAJC22S KCNH1--AL590132.1 2.60350383149347 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_ZMKMKCFQ -BS_YMAJC22S ERC2--ERC2 2.27539556218159 2.27539556218159 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZMKMKCFQ -BS_YMAJC22S KCNH1--AL590132.1 2.60350383149347 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_ZMKMKCFQ -BS_YMAJC22S KCNH1--KCNH1 2.60350383149347 2.60350383149347 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZMKMKCFQ -BS_YNEQJ6AH KCNH1--KCNH1 1.87535594092743 1.87535594092743 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NS1F6DT8 -BS_YNEQJ6AH AL590132.1--KCNH1 NA 1.87535594092743 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_NS1F6DT8 -BS_YNEQJ6AH ERC2--ERC2 1.56891756283607 1.56891756283607 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NS1F6DT8 -BS_YNEQJ6AH AL590132.1--KCNH1 NA 1.87535594092743 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_NS1F6DT8 -BS_YNEQJ6AH KCNH1--AL590132.1 1.87535594092743 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_NS1F6DT8 -BS_YNEQJ6AH KCNH1--AL590132.1 1.87535594092743 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_NS1F6DT8 -BS_YVMEEBKC CSMD3--CSMD3 4.37995579811248 4.37995579811248 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_DMHFS0HX -BS_YVMEEBKC KIAA1549--BRAF 4.57461450386824 2.042377140032 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_DMHFS0HX -BS_YY5B2XDD CSMD3--CSMD3 2.98313849109802 2.98313849109802 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_1KEER2Q1 -BS_YY5B2XDD KIAA1549--BRAF 4.03261152470672 2.37694030994884 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_1KEER2Q1 -BS_YZ2Z1Q6Y KIAA1549--BRAF 4.11656808490397 1.75211450428537 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_TH18S0JQ -BS_Z0AVVB1V KIAA1549--BRAF 3.08777704999453 1.63525298468285 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_SJEG0MKD -BS_Z1A875MW ERC2--ERC2 2.04499769879763 2.04499769879763 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_D9NTSYSC -BS_Z1A875MW GTF2I--BRAF 1.75524439376199 2.29895322502449 NA NA no change differentially expressed NA NA in-frame GTF2I NA BRAF NA TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_D9NTSYSC -BS_Z2NWPQKF KCNH1--AL590132.1 2.02558036552263 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_YY7CRV21 -BS_Z2NWPQKF AL590132.1--KCNH1 NA 2.02558036552263 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_YY7CRV21 -BS_Z2NWPQKF ERC2--ERC2 1.26754064971675 1.26754064971675 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_YY7CRV21 -BS_Z2NWPQKF KCNH1--KCNH1 2.02558036552263 2.02558036552263 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_YY7CRV21 -BS_Z2NWPQKF RFX4--RFX4 1.50168107271341 1.50168107271341 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_YY7CRV21 -BS_Z2NWPQKF MYT1L--MYT1L -1.7324248086433 -1.7324248086433 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_YY7CRV21 -BS_Z2NWPQKF KCNH1--AL590132.1 2.02558036552263 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_YY7CRV21 -BS_Z2NWPQKF AL590132.1--KCNH1 NA 2.02558036552263 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_YY7CRV21 -BS_Z3RCA1T9 ASH1L--DUX4L2/DUX4 1.04002297398583 NA NA -0.595069764557869 no change NA NA no change frameshift ASH1L NA DUX4L2 DUX4 TranscriptionFactor NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_C9YDTZPA -BS_Z3RCA1T9 MBP--QKI -0.0368929033522181 2.64928053722281 NA NA no change differentially expressed NA NA frameshift MBP NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_C9YDTZPA -BS_Z3RCA1T9 MBP--QKI -0.0368929033522181 2.64928053722281 NA NA no change differentially expressed NA NA in-frame MBP NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_C9YDTZPA -BS_Z3RCA1T9 ASH1L--BNIP3P41 1.04002297398583 -0.154607014039302 NA NA no change no change NA NA frameshift ASH1L NA BNIP3P41 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_C9YDTZPA -BS_Z3RCA1T9 REV3L--FYN 1.60514848825742 4.51202285926897 NA NA no change differentially expressed NA NA in-frame REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_C9YDTZPA -BS_Z3RCA1T9 MMP16--CNBD1 10.0023294443951 -0.241739394025977 NA NA differentially expressed no change NA NA frameshift MMP16 NA CNBD1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_C9YDTZPA -BS_Z3RCA1T9 REV3L--FYN 1.60514848825742 4.51202285926897 NA NA no change differentially expressed NA NA frameshift REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_C9YDTZPA -BS_Z45HD492 JAK2--JAK2 0.630670806764628 0.630670806764628 NA NA no change no change NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_T3REPTTC -BS_Z6BWR941 KIAA1549--BRAF 4.07491451163637 2.0960755896029 NA NA differentially expressed differentially expressed NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_YJGTKDV0 -BS_Z6BWR941 CSMD3--CSMD3 4.84466991683206 4.84466991683206 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_YJGTKDV0 -BS_Z6MC4N8D ERC2--ERC2 0.682337447982684 0.682337447982684 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3PSG2DQT -BS_Z7890YNR HOXC10--TRHDE 14.7269494036559 1.45016423767665 NA NA differentially expressed no change NA NA frameshift HOXC10 NA TRHDE NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_99S5BPE3 -BS_Z7890YNR C11orf95--RELA 5.99402775088314 5.48246792679446 NA NA differentially expressed differentially expressed NA NA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_99S5BPE3 -BS_Z7890YNR RBFOX2--OPCML 0.830062323366618 -0.631615750500058 NA NA no change no change NA NA frameshift RBFOX2 NA OPCML NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_99S5BPE3 -BS_Z7890YNR SOX5--DUSP16 5.72965727170595 3.03738167886622 NA NA differentially expressed differentially expressed NA NA frameshift SOX5 NA DUSP16 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_99S5BPE3 -BS_Z7PKVY9J MTSS1--CLU 3.73389535557254 -1.24190513122216 NA NA differentially expressed no change NA NA frameshift MTSS1 NA CLU NA TumorSuppressorGene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_M0AP3Z15 -BS_Z7PKVY9J JAK2--JAK2 3.76965142873203 3.76965142873203 NA NA differentially expressed differentially expressed NA NA frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_M0AP3Z15 -BS_Z7Y2466H PLCE1--PIPSL/PLCE1 5.48136392201688 4.78087206020971 NA 5.48136392201688 differentially expressed differentially expressed NA differentially expressed frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_9B6KWJT2 -BS_Z7Y2466H MYT1L--MYT1L -1.24965522189478 -1.24965522189478 NA NA no change no change NA NA in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_9B6KWJT2 -BS_Z7Y2466H PEAK1--LINGO1 6.79644428758628 1.36589882056722 NA NA differentially expressed no change NA NA frameshift PEAK1 NA LINGO1 NA Kinase NA NA NA NA ARRIBA 1 PT_9B6KWJT2 -BS_Z7Y2466H KIAA1549--BRAF 3.13481869215152 1.89755848335526 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_9B6KWJT2 -BS_Z85M2R3N RFX4--RFX4 1.89650941286259 1.89650941286259 NA NA no change no change NA NA frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_QJ3144WH -BS_Z85M2R3N MFHAS1--PRAG1 1.48785972124293 NA NA NA no change NA NA NA frameshift MFHAS1 NA PRAG1 NA Oncogene Kinase NA NA NA ARRIBA 1 PT_QJ3144WH -BS_ZA9XT151 MTSS1--MTSS1 0.341931619561428 0.341931619561428 NA NA no change no change NA NA frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_WP871F5S -BS_ZA9XT151 BRINP1--BRINP1 -1.86374443588536 -1.86374443588536 NA NA no change no change NA NA frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_WP871F5S -BS_ZA9XT151 NRXN2--NRXN2 -0.753504554004558 -0.753504554004558 NA NA no change no change NA NA frameshift NRXN2 NA NRXN2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WP871F5S -BS_ZA9XT151 OPCML--OPCML -0.610699371770599 -0.610699371770599 NA NA no change no change NA NA in-frame OPCML NA OPCML NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_WP871F5S -BS_ZD5HN296 BRSK2--AL078612.2 -2.40002688639666 NA NA NA differentially expressed NA NA NA frameshift BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_ZD5HN296 CDKN2A--FAM71BP1/AL353753.1 2.74127685954926 -0.050759979026114 NA NA differentially expressed no change NA NA frameshift CDKN2A NA FAM71BP1 AL353753.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_ZD5HN296 AC084337.2--LMO2/CAPRIN1 NA 2.33173763996533 NA 1.67151300021531 NA differentially expressed NA no change frameshift AC084337.2 NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG -BS_ZD5HN296 TIMM10B--LMO2/CAPRIN1 1.45702175506524 2.33173763996533 NA 1.67151300021531 no change differentially expressed NA no change frameshift TIMM10B NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG -BS_ZD5HN296 PPFIBP1--AC006206.2 0.535396012349975 NA NA NA no change NA NA NA frameshift PPFIBP1 NA AC006206.2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_ZD5HN296 IPO7--HIPK3 2.05832022623958 2.81773191872838 NA NA differentially expressed differentially expressed NA NA frameshift IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_89XRZBSG -BS_ZD5HN296 HIPK3--AL078612.1 2.81773191872838 NA NA NA differentially expressed NA NA NA frameshift HIPK3 NA AL078612.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_ZD5HN296 HIPK3--RCN1 2.81773191872838 2.03768264918596 NA NA differentially expressed differentially expressed NA NA frameshift HIPK3 NA RCN1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_ZD5HN296 EXT1--AP003548.1 2.62855830990291 NA NA NA differentially expressed NA NA NA frameshift EXT1 NA AP003548.1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_ZD5HN296 CD44--AC124657.1/AL358944.1 3.42782123518118 NA NA NA differentially expressed NA NA NA frameshift CD44 NA AC124657.1 AL358944.1 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_ZD5HN296 CD44--AC110058.1 3.42782123518118 NA NA NA differentially expressed NA NA NA frameshift CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_ZD5HN296 CD44--WIZP1/MIR8054 3.42782123518118 44.4158678609757 NA NA differentially expressed differentially expressed NA NA frameshift CD44 NA WIZP1 MIR8054 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG -BS_ZF6BSFNF YPEL2--PRKAR1A -0.242130933466887 0.785133148260572 NA NA no change no change NA NA in-frame YPEL2 NA PRKAR1A NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_NWYSD53S -BS_ZF6BSFNF ABR--YWHAE 0.426186089042468 1.15763646966891 NA NA no change no change NA NA in-frame ABR NA YWHAE NA Oncogene CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_NWYSD53S -BS_ZF6BSFNF NBEA--AC023310.4/NBEAP1 -0.084250446254581 NA NA -0.393354259316685 no change NA NA no change frameshift NBEA NA AC023310.4 NBEAP1 CosmicCensus NA NA Oncogene NA ARRIBA 1 PT_NWYSD53S -BS_ZF6BSFNF DPF3--TLE1 -0.357901759055357 0.535934798982283 NA NA no change no change NA NA in-frame DPF3 NA TLE1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_NWYSD53S -BS_ZF6BSFNF HNRNPD--LIN54 0.795376711445968 0.519260701498293 NA NA no change no change NA NA in-frame HNRNPD NA LIN54 NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_NWYSD53S -BS_ZH1FBX50 AL590132.1--KCNH1 NA 4.14287006567823 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_7JQ24F35 -BS_ZH1FBX50 KCNH1--AL590132.1 4.14287006567823 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_7JQ24F35 -BS_ZH1FBX50 KCNH1--KCNH1 4.14287006567823 4.14287006567823 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7JQ24F35 -BS_ZH1FBX50 ERC2--ERC2 3.18100083635448 3.18100083635448 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7JQ24F35 -BS_ZH1FBX50 LRRK2--LRRK2 -0.110347214199108 -0.110347214199108 NA NA no change no change NA NA frameshift LRRK2 NA LRRK2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_7JQ24F35 -BS_ZH1FBX50 AL590132.1--KCNH1 NA 4.14287006567823 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_7JQ24F35 -BS_ZH1FBX50 MCM9--MCM9 1.25085239437806 1.25085239437806 NA NA no change no change NA NA in-frame MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_7JQ24F35 -BS_ZH1FBX50 KCNH1--AL590132.1 4.14287006567823 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_7JQ24F35 -BS_ZHHAM3AN ERC2--ERC2 -0.793970175226962 -0.793970175226962 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_J06X17XH -BS_ZHHAM3AN MBNL1--BRAF 5.7896130605859 1.19449968298627 NA NA differentially expressed no change NA NA in-frame MBNL1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_J06X17XH -BS_ZJZXDPTP ABR--ANKS1B 0.218408197302932 -1.72187031122531 NA NA no change no change NA NA in-frame ABR NA ANKS1B NA Oncogene NA NA NA NA ARRIBA 1 PT_VREE80NP -BS_ZN8136D9 STXBP1--RREB1 -1.46187105209397 8.36121357315506 NA NA no change differentially expressed NA NA frameshift STXBP1 NA RREB1 NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_AYZA2WCW -BS_ZQKGJD70 HGNC:18790--SRPK2 NA 0.376460038592386 NA NA NA no change NA NA frameshift HGNC:18790 NA SRPK2 NA NA Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_VBG3Z18B -BS_ZQKGJD70 CCDC144A--USP32 2.2317012721281 0.190519457743846 NA NA differentially expressed no change NA NA in-frame CCDC144A NA USP32 NA NA Oncogene NA NA NA ARRIBA 1 PT_VBG3Z18B -BS_ZR96A4FH AL590132.1--KCNH1 NA 3.30347144946073 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_E546ZRXA -BS_ZR96A4FH ERC2--ERC2 3.43743942701882 3.43743942701882 NA NA differentially expressed differentially expressed NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_E546ZRXA -BS_ZR96A4FH AL590132.1--KCNH1 NA 3.30347144946073 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_E546ZRXA -BS_ZR96A4FH CSMD3--CSMD3 2.70682672592678 2.70682672592678 NA NA differentially expressed differentially expressed NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_E546ZRXA -BS_ZR96A4FH PTPRG--PTPRG 4.44311073324993 4.44311073324993 NA NA differentially expressed differentially expressed NA NA in-frame PTPRG NA PTPRG NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_E546ZRXA -BS_ZR96A4FH MYT1L--MYT1L 1.26370720326508 1.26370720326508 NA NA no change no change NA NA frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_E546ZRXA -BS_ZR96A4FH CUX2--CUX2 0.45649639902395 0.45649639902395 NA NA no change no change NA NA frameshift CUX2 NA CUX2 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_E546ZRXA -BS_ZR96A4FH KCNH1--AL590132.1 3.30347144946073 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_E546ZRXA -BS_ZR96A4FH BRINP1--BRINP1 0.555906509721534 0.555906509721534 NA NA no change no change NA NA frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_E546ZRXA -BS_ZR96A4FH KCNH1--AL590132.1 3.30347144946073 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_E546ZRXA -BS_ZR96A4FH POU6F2--POU6F2 4.61171467057673 4.61171467057673 NA NA differentially expressed differentially expressed NA NA frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_E546ZRXA -BS_ZR96A4FH KCNH1--KCNH1 3.30347144946073 3.30347144946073 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_E546ZRXA -BS_ZR96A4FH FPGT-TNNI3K--FPGT-TNNI3K 2.22176734373427 2.22176734373427 NA NA differentially expressed differentially expressed NA NA frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_E546ZRXA -BS_ZRM0W01M MYT1L--MYT1L 1.06147769515764 1.06147769515764 NA NA no change no change NA NA frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_EYZ25B99 -BS_ZRM0W01M ERC2--ERC2 0.581949612174132 0.581949612174132 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_EYZ25B99 -BS_ZRM0W01M CSMD3--CSMD3 1.54187539761285 1.54187539761285 NA NA no change no change NA NA in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_EYZ25B99 -BS_ZRM0W01M TNNI3K--TNNI3K -1.28783269207138 -1.28783269207138 NA NA no change no change NA NA frameshift TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_EYZ25B99 -BS_ZRM0W01M FPGT-TNNI3K--FPGT-TNNI3K 1.23211692674217 1.23211692674217 NA NA no change no change NA NA frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_EYZ25B99 -BS_ZRM0W01M PLEKHA8--PLEKHA8 2.26342040662446 2.26342040662446 NA NA differentially expressed differentially expressed NA NA in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_EYZ25B99 -BS_ZTWGFWTX KIAA1549--BRAF 2.98221899409301 0.719939895016428 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_TEBD1SES -BS_ZV1P6W9C TRRAP--NRXN3 2.45284789594628 -1.05918366122826 NA NA differentially expressed no change NA NA in-frame TRRAP NA NRXN3 NA Kinase, CosmicCensus, Kinase NA NA NA NA ARRIBA 1 PT_ZVYRFGEN -BS_ZV68CES9 NBEA--AC023310.4/NBEAP1 2.30336250187542 NA NA 14.6220167576737 differentially expressed NA NA differentially expressed frameshift NBEA NA AC023310.4 NBEAP1 CosmicCensus NA NA Oncogene NA ARRIBA 1 PT_F0N89D15 -BS_ZV68CES9 GNPTAB--MMP2 -2.54020542309452 2.73520057788001 NA NA differentially expressed differentially expressed NA NA frameshift GNPTAB NA MMP2 NA NA Oncogene NA NA NA ARRIBA 1 PT_F0N89D15 -BS_ZV68CES9 ST18--ST18 2.98087596989946 2.98087596989946 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_F0N89D15 -BS_ZV9Z3SY6 KIAA1549--BRAF 4.59449283077586 1.16760322052968 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_S3FJSBJT -BS_ZVZDDW2G GPHN--FAM19A5 -0.949991372143894 -3.75328159911884 NA NA no change differentially expressed NA NA in-frame GPHN NA FAM19A5 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_E3ADF4ZB -BS_ZVZDDW2G RALGAPA1--PI4KA -0.0627716838090541 -1.18673462061397 NA NA no change no change NA NA frameshift RALGAPA1 NA PI4KA NA NA Kinase NA NA NA ARRIBA 1 PT_E3ADF4ZB -BS_ZVZDDW2G CECR2--RAD51B -0.577042686786537 0.0515906352414793 NA NA no change no change NA NA frameshift CECR2 NA RAD51B NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_E3ADF4ZB -BS_ZVZDDW2G BCR--FERMT2 -1.13811291765802 0.686166413645313 NA NA no change no change NA NA in-frame BCR NA FERMT2 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_E3ADF4ZB -BS_ZVZDDW2G MN1--PATZ1 2.55421986321191 4.10800824578231 NA NA differentially expressed differentially expressed NA NA frameshift MN1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_E3ADF4ZB -BS_ZVZDDW2G SPTLC2--YPEL1/MAPK1 1.54521928520328 -1.61999507337803 NA 1.87916108092814 no change no change NA no change frameshift SPTLC2 NA YPEL1 MAPK1 NA NA NA CosmicCensus, Oncogene, Kinase NA ARRIBA 1 PT_E3ADF4ZB -BS_ZVZDDW2G MN1--PATZ1 2.55421986321191 4.10800824578231 NA NA differentially expressed differentially expressed NA NA in-frame MN1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_E3ADF4ZB -BS_ZVZDDW2G PCNX1--MNAT1 NA 0.148214743588275 NA NA NA no change NA NA in-frame PCNX1 NA MNAT1 NA NA Oncogene NA NA NA ARRIBA 1 PT_E3ADF4ZB -BS_ZVZDDW2G NUMB--TRAV7 0.426827616118184 76.1930864076837 NA NA no change differentially expressed NA NA frameshift NUMB NA TRAV7 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_E3ADF4ZB -BS_ZVZDDW2G PI4KA--MDGA2 -1.18673462061397 0.64342072589718 NA NA no change no change NA NA frameshift PI4KA NA MDGA2 NA Kinase NA NA NA NA ARRIBA 1 PT_E3ADF4ZB -BS_ZVZDDW2G NPAS3--SMARCB1 0.583666428068417 -0.314932300463267 NA NA no change no change NA NA in-frame NPAS3 NA SMARCB1 NA TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_E3ADF4ZB -BS_ZXYDSBM9 ST18--ST18 2.56181075138733 2.56181075138733 NA NA differentially expressed differentially expressed NA NA frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_R63RHJWX -BS_ZXYDSBM9 KCNH1--KCNH1 3.36154002506614 3.36154002506614 NA NA differentially expressed differentially expressed NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_R63RHJWX -BS_ZXYDSBM9 KCNH1--AL590132.1 3.36154002506614 NA NA NA differentially expressed NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_R63RHJWX -BS_ZXYDSBM9 GOPC--FYN 0.362893850138177 3.46315914267084 NA NA no change differentially expressed NA NA frameshift GOPC NA FYN NA CosmicCensus, Oncogene Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_R63RHJWX -BS_ZXYDSBM9 FAM49A--AC010145.1 0.891381650769836 NA NA NA no change NA NA NA frameshift FAM49A NA AC010145.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_R63RHJWX -BS_ZXYDSBM9 AL590132.1--KCNH1 NA 3.36154002506614 NA NA NA differentially expressed NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_R63RHJWX -BS_ZXYDSBM9 FAM49A--RN7SL104P/AC010145.1 0.891381650769836 NA NA NA no change NA NA NA frameshift FAM49A NA RN7SL104P AC010145.1 Oncogene NA NA NA NA ARRIBA 1 PT_R63RHJWX -BS_ZXYDSBM9 AL590132.1--KCNH1 NA 3.36154002506614 NA NA NA differentially expressed NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_R63RHJWX -BS_ZXYDSBM9 KCNH1--AL590132.1 3.36154002506614 NA NA NA differentially expressed NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_R63RHJWX -BS_ZXYDSBM9 CHFR--CHFR 0.33442574352158 0.33442574352158 NA NA no change no change NA NA in-frame CHFR NA CHFR NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_R63RHJWX -BS_ZXYDSBM9 FAM49A--MYCNOS 0.891381650769836 17.2534643854775 NA NA no change differentially expressed NA NA frameshift FAM49A NA MYCNOS NA Oncogene NA NA NA NA ARRIBA 1 PT_R63RHJWX -BS_ZZMYDZJW KIAA1549--BRAF 3.9927307238719 1.80381332399274 NA NA differentially expressed no change NA NA in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_5M8A47WW -BS_ZZPBANDD AL590132.1--KCNH1 NA 1.8257156814599 NA NA NA no change NA NA in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_9YNQJZ5G -BS_ZZPBANDD ERC2--ERC2 1.83473078524255 1.83473078524255 NA NA no change no change NA NA in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_9YNQJZ5G -BS_ZZPBANDD KCNH1--AL590132.1 1.8257156814599 NA NA NA no change NA NA NA frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_9YNQJZ5G -BS_ZZPBANDD KCNH1--AL590132.1 1.8257156814599 NA NA NA no change NA NA NA in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_9YNQJZ5G -BS_ZZPBANDD KCNH1--KCNH1 1.8257156814599 1.8257156814599 NA NA no change no change NA NA frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_9YNQJZ5G -BS_ZZPBANDD CNTN4--CNTN4 0.929214656254379 0.929214656254379 NA NA no change no change NA NA in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_9YNQJZ5G -BS_ZZPBANDD AL590132.1--KCNH1 NA 1.8257156814599 NA NA NA no change NA NA frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_9YNQJZ5G -BS_ZZWMD6FA PPP1CB--ALK 2.92816423753225 7.31193792330893 NA NA differentially expressed differentially expressed NA NA in-frame PPP1CB NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RGX23JFP -BS_ZZWMD6FA FAM135B--FAM135B 0.657503364142687 0.657503364142687 NA NA no change no change NA NA frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_RGX23JFP -BS_ZZWMD6FA ALK--SPDYA 7.31193792330893 -1.38853393296424 NA NA differentially expressed no change NA NA frameshift ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_RGX23JFP -BS_ZZWMD6FA ALK--PPP1CB 7.31193792330893 2.92816423753225 NA NA differentially expressed differentially expressed NA NA frameshift ALK NA PPP1CB NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_RGX23JFP +Sample FusionName Fusion_Type Gene1A Gene2A Gene1B Gene2B Gene1A_anno Gene1B_anno Gene2A_anno Gene2B_anno Fusion_anno CalledBy caller.count Kids_First_Participant_ID +BS_044XZ8ST BRAF--ANTXR1 in-frame BRAF NA ANTXR1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_QAX38GM7 +BS_07ANYSYQ CFAP43--CFAP43 frameshift CFAP43 NA CFAP43 NA NA NA NA NA NA ARRIBA 1 PT_S4H6KA09 +BS_07ANYSYQ CHD2--CHD2 in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_S4H6KA09 +BS_09Z7TC35 SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_YHTK536P +BS_1A6MQ9ZA NF1--ACACB in-frame NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_JSFBMK5V +BS_1AYRM596 SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_BPKVVWVB +BS_1D6PZNKN BCL2L13--PARVB frameshift BCL2L13 NA PARVB NA NA Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_7DTGJYA7 +BS_1D6PZNKN OXSR1--SCFD2 in-frame OXSR1 NA SCFD2 NA Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_7DTGJYA7 +BS_1D6PZNKN SCUBE1--HSD17B4 frameshift SCUBE1 NA HSD17B4 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_7DTGJYA7 +BS_1D6PZNKN ZNF43--ERC1 in-frame ZNF43 NA ERC1 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_7DTGJYA7 +BS_1EBQ3T20 CBWD1--GABRG3 frameshift CBWD1 NA GABRG3 NA NA NA NA NA NA ARRIBA 1 PT_4347ZBEX +BS_1EBQ3T20 ELOA--IFNLR1 frameshift ELOA NA IFNLR1 NA NA NA NA NA NA ARRIBA 1 PT_4347ZBEX +BS_1HQ76V6D AFDN--SMTN in-frame AFDN NA SMTN NA CosmicCensus, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_WE1CHTWK +BS_1HQ76V6D GNB1L--NF2 in-frame GNB1L NA NF2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_1HQ76V6D NF2--POLR2F frameshift NF2 NA POLR2F NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_WE1CHTWK +BS_1HQ76V6D RBFOX2--IGLC2 frameshift RBFOX2 NA IGLC2 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_WE1CHTWK +BS_1SVVER1H HTRA1--SH3PXD2A in-frame HTRA1 NA SH3PXD2A NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_RM9AZ7A8 +BS_1SVVER1H SH3PXD2A--HTRA1 in-frame SH3PXD2A NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_RM9AZ7A8 +BS_1XJ73KBQ ZFPM2--PEX5L frameshift ZFPM2 NA PEX5L NA TranscriptionFactor NA NA NA NA ARRIBA, STARFUSION 2 PT_AXVH36AM +BS_23M72ABG UVRAG--AP003049.2 frameshift UVRAG NA AP003049.2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_AQWDQW27 +BS_23QW0BBA CRK--DNAH2 frameshift CRK NA DNAH2 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_3X3MF8ZD +BS_23QW0BBA IRS2--MYO16 in-frame IRS2 NA MYO16 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_3X3MF8ZD +BS_2A162JH9 PAX3--AC079834.2/AC079834.1 frameshift PAX3 NA AC079834.2 AC079834.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JNEV57VK +BS_2SFTWNVE SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_BG7GAFK6 +BS_2XD3MNKD KSR2--KSR2 frameshift KSR2 NA KSR2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_YQWG98Z5 +BS_31TF0P1N PITPNB--ANKS6 in-frame PITPNB NA ANKS6 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_M04EC74B +BS_3F4FQJMR ARID1B--PLAGL1 in-frame ARID1B NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_8RB7TPS2 +BS_3F4FQJMR KIF6--FAM26F frameshift KIF6 NA FAM26F NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_8RB7TPS2 +BS_3F4FQJMR QKI--ARID1B in-frame QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_8RB7TPS2 +BS_3NWQXPQV SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_0DWRY9ZX +BS_3X9WMZGJ ABCC9--ABCC9 frameshift ABCC9 NA ABCC9 NA NA NA NA NA NA ARRIBA 1 PT_3VCS1PPF +BS_401R3KV0 BCAS1--RAF1 in-frame BCAS1 NA RAF1 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_MBAXTJET +BS_401R3KV0 CREBBP--DOK5 frameshift CREBBP NA DOK5 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_MBAXTJET +BS_401R3KV0 TSEN2--BCAS1 in-frame TSEN2 NA BCAS1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_MBAXTJET +BS_40MP5BWR AUTS2--DCDC1 in-frame AUTS2 NA DCDC1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_JSFBMK5V +BS_40MP5BWR NF1--ACACB in-frame NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_JSFBMK5V +BS_45J79YTF PTPRZ1--MET in-frame PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_6GDPNFA6 +BS_479S95Q6 HTRA1--TANC1 in-frame HTRA1 NA TANC1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_8V3360DR +BS_479S95Q6 TANC1--HTRA1 in-frame TANC1 NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_8V3360DR +BS_49BQS7Z6 BCL2L13--IGLV6-57 in-frame BCL2L13 NA IGLV6-57 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_HNZNZ635 +BS_49FQXT2E PEX5--SLCO1C1 in-frame PEX5 NA SLCO1C1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_89XRZBSG +BS_49FQXT2E PEX5--SLCO1C1 frameshift PEX5 NA SLCO1C1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_89XRZBSG +BS_49FQXT2E RER1--ADAMTS17 frameshift RER1 NA ADAMTS17 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_89XRZBSG +BS_49FQXT2E SPATS2L--SLC25A12 in-frame SPATS2L NA SLC25A12 NA NA NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E XPO6--AHSP frameshift XPO6 NA AHSP NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_89XRZBSG +BS_4B0BAVTX CCDC68--CCDC39 frameshift CCDC68 NA CCDC39 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_7FZ8SE69 +BS_4B0BAVTX CCDC68--CCDC39 in-frame CCDC68 NA CCDC39 NA NA NA NA NA NA ARRIBA 1 PT_7FZ8SE69 +BS_4B0BAVTX DNTTIP1--SPO11 in-frame DNTTIP1 NA SPO11 NA TranscriptionFactor NA NA NA NA ARRIBA, STARFUSION 2 PT_7FZ8SE69 +BS_4B0BAVTX SCHIP1--CCDC68 frameshift SCHIP1 NA CCDC68 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_7FZ8SE69 +BS_4B0BAVTX SCHIP1--CCDC68 in-frame SCHIP1 NA CCDC68 NA NA NA NA NA NA ARRIBA 1 PT_7FZ8SE69 +BS_4JWBB28H PAX3--NCOA1 in-frame PAX3 NA NCOA1 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_69C7CBFW +BS_4PPHAQXF SEMA5A--MARCH6 in-frame SEMA5A NA MARCH6 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_P5HHJJPH +BS_4QW2S1Q8 BOD1--AC243725.1 frameshift BOD1 NA AC243725.1 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 CCAR1--GRID1 frameshift CCAR1 NA GRID1 NA TumorSuppressorGene NA NA NA NA ARRIBA, STARFUSION 2 PT_Y5KY6KN9 +BS_4QW2S1Q8 HIF1AN--AL162274.3/JAKMIP3 frameshift HIF1AN NA AL162274.3 JAKMIP3 NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 PDGFC--PRDM5 frameshift PDGFC NA PRDM5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_Y5KY6KN9 +BS_4QW2S1Q8 PTDSS2--SBF2 in-frame PTDSS2 NA SBF2 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 SLC30A9--AC093730.1 frameshift SLC30A9 NA AC093730.1 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 SLC30A9--AC093730.1/TECRL frameshift SLC30A9 NA AC093730.1 TECRL NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 UBE2R2--AC004870.3/TNS3 frameshift UBE2R2 NA AC004870.3 TNS3 NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4W68NV3M SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_D215EQAP +BS_58YXHGAJ BLOC1S5--JARID2 frameshift BLOC1S5 NA JARID2 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_G4N67N0D +BS_58YXHGAJ LYRM4--SMAP1 frameshift LYRM4 NA SMAP1 NA NA Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_G4N67N0D +BS_58YXHGAJ NUDT3--CD2AP frameshift NUDT3 NA CD2AP NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_G4N67N0D +BS_58YXHGAJ NUDT3--CD2AP in-frame NUDT3 NA CD2AP NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_G4N67N0D +BS_58YXHGAJ PPARD--SLC17A5 in-frame PPARD NA SLC17A5 NA Oncogene, TranscriptionFactor NA NA NA NA STARFUSION, ARRIBA 2 PT_G4N67N0D +BS_58YXHGAJ PPARD--SLC17A5 frameshift PPARD NA SLC17A5 NA Oncogene, TranscriptionFactor NA NA NA NA STARFUSION, ARRIBA 2 PT_G4N67N0D +BS_58YXHGAJ UBE2J1--ADGRB3 frameshift UBE2J1 NA ADGRB3 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_G4N67N0D +BS_593HEWBF PTPRZ1--AHCYL2 frameshift PTPRZ1 NA AHCYL2 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_DB800CE1 +BS_593HEWBF PTPRZ1--AHCYL2 in-frame PTPRZ1 NA AHCYL2 NA NA NA NA NA NA ARRIBA 1 PT_DB800CE1 +BS_593HEWBF TNS3--BRAF in-frame TNS3 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_DB800CE1 +BS_61E80SD6 SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_39HBKSGG +BS_685DACMS TTYH1--DPRX/RNU6-698P frameshift TTYH1 NA DPRX RNU6-698P Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_7PXN3B4J +BS_68KX6A42 AUTS2--RNF216 in-frame AUTS2 NA RNF216 NA NA Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 +BS_68KX6A42 AUTS2--RNF216 frameshift AUTS2 NA RNF216 NA NA Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 DBNL--SLC26A4 frameshift DBNL NA SLC26A4 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 +BS_68KX6A42 DBNL--SLC26A4 in-frame DBNL NA SLC26A4 NA NA NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 JAZF1--MDH2 frameshift JAZF1 NA MDH2 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 +BS_68KX6A42 PTPN12--WDR60 frameshift PTPN12 NA WDR60 NA TumorSuppressorGene NA NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 +BS_68KX6A42 PTPN12--WDR60 in-frame PTPN12 NA WDR60 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 SCRN1--LSM5 in-frame SCRN1 NA LSM5 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 +BS_68KX6A42 SELENOS--ACSBG1 frameshift SELENOS NA ACSBG1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 +BS_68KX6A42 SEMA3C--YWHAG frameshift SEMA3C NA YWHAG NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 +BS_68KX6A42 SLC26A4--AGK frameshift SLC26A4 NA AGK NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 +BS_6DCSD5Y6 TSPAN12--MET in-frame TSPAN12 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_4YWZ538V +BS_6JHXXVR7 ABR--AC134669.2 frameshift ABR NA AC134669.2 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_6JHXXVR7 ADCY9--AC093525.2 frameshift ADCY9 NA AC093525.2 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_6JHXXVR7 ADCY9--ATP6V0C in-frame ADCY9 NA ATP6V0C NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_6JHXXVR7 ADCY9--ATP6V0C frameshift ADCY9 NA ATP6V0C NA NA NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 AMBRA1--AKAP6 frameshift AMBRA1 NA AKAP6 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_6JHXXVR7 ATP6V0D1--WARS frameshift ATP6V0D1 NA WARS NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_6JHXXVR7 IMMP2L--CNOT4 in-frame IMMP2L NA CNOT4 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_6JHXXVR7 IMMP2L--CNOT4 frameshift IMMP2L NA CNOT4 NA NA NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 PNPLA8--IMMP2L in-frame PNPLA8 NA IMMP2L NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_6JHXXVR7 PNPLA8--IMMP2L frameshift PNPLA8 NA IMMP2L NA NA NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 RABEP1--APBB1IP frameshift RABEP1 NA APBB1IP NA CosmicCensus, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_6JHXXVR7 RAI14--MARF1 in-frame RAI14 NA MARF1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_6JHXXVR7 RAI14--MARF1 frameshift RAI14 NA MARF1 NA NA NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 SND1--IQUB frameshift SND1 NA IQUB NA CosmicCensus NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 SND1--IQUB in-frame SND1 NA IQUB NA CosmicCensus NA NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_6JHXXVR7 TMEM131--NPHP1 frameshift TMEM131 NA NPHP1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_6M2053M0 MTMR4--RGS9 frameshift MTMR4 NA RGS9 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_RE6AXQM1 +BS_6M2053M0 NCAM1--ELMOD1 frameshift NCAM1 NA ELMOD1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_RE6AXQM1 +BS_6M2053M0 RPS6KA2--C6orf118 frameshift RPS6KA2 NA C6orf118 NA TumorSuppressorGene, Kinase NA NA NA NA STARFUSION, ARRIBA 2 PT_RE6AXQM1 +BS_6M2053M0 SARAF--TUSC3 in-frame SARAF NA TUSC3 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_RE6AXQM1 +BS_6VPKXXMR GAPDHS--NOA1 frameshift GAPDHS NA NOA1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_6PP78VNE +BS_6VPKXXMR PPP1R12B--TM4SF5 in-frame PPP1R12B NA TM4SF5 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_6PP78VNE +BS_6WP1FHTE MBNL2--RERGL frameshift MBNL2 NA RERGL NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4PJA6KT +BS_6WP1FHTE TDRD3--CGNL1 in-frame TDRD3 NA CGNL1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_Z4PJA6KT +BS_7327SDAQ PTPRZ1--MET in-frame PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_7WT6P5M8 +BS_7327SDAQ PTPRZ1--MET frameshift PTPRZ1 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_7WT6P5M8 +BS_7327SDAQ ZNF521--PPM1E frameshift ZNF521 NA PPM1E NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_7WT6P5M8 +BS_74FS6GMW NPAS3--ARHGAP5 frameshift NPAS3 NA ARHGAP5 NA TranscriptionFactor CosmicCensus NA NA NA ARRIBA, STARFUSION 2 PT_XTVQB9S4 +BS_74G5K7JF C11orf95--NCOA1 in-frame C11orf95 NA NCOA1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_8PV84CNE +BS_7BTZQKYY ABCC9--ABCC9 frameshift ABCC9 NA ABCC9 NA NA NA NA NA NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY CHD2--CHD2 frameshift CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_QZN7FZER +BS_7FWZ518S BAIAP2--MAP2K6 frameshift BAIAP2 NA MAP2K6 NA NA Kinase, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_SBP79T7F +BS_7FWZ518S SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_SBP79T7F +BS_7G42J2SK AFDN--AFDN in-frame AFDN NA AFDN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK CAPS2--CAPS2 frameshift CAPS2 NA CAPS2 NA NA NA NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK CHD2--CHD2 in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK CTAGE5--CTAGE5 in-frame CTAGE5 NA CTAGE5 NA NA NA NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK DST--DST in-frame DST NA DST NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK MAP4K5--MAP4K5 in-frame MAP4K5 NA MAP4K5 NA Kinase Kinase NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK PREX2--PREX2 frameshift PREX2 NA PREX2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK SHPRH--SHPRH frameshift SHPRH NA SHPRH NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK USP24--USP24 frameshift USP24 NA USP24 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK VPS13C--VPS13C in-frame VPS13C NA VPS13C NA NA NA NA NA NA ARRIBA 1 PT_BWN251DF +BS_81SP2HX4 CCND2--NINJ2 in-frame CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_XA98HG1C +BS_81SP2HX4 CCND2--NINJ2 frameshift CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA STARFUSION 1 PT_XA98HG1C +BS_8NY9J9NQ NF2--AC069503.2 in-frame NF2 NA AC069503.2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_JEW5HG4W +BS_8NY9J9NQ NF2--AC069503.2 frameshift NF2 NA AC069503.2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_JEW5HG4W +BS_8NY9J9NQ NF2--PSMD9 in-frame NF2 NA PSMD9 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_JEW5HG4W +BS_8NY9J9NQ NF2--PSMD9 frameshift NF2 NA PSMD9 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_JEW5HG4W +BS_8NY9J9NQ PMPCB--CNTNAP2 in-frame PMPCB NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA, STARFUSION 2 PT_JEW5HG4W +BS_8NY9J9NQ SGPL1--DIP2C frameshift SGPL1 NA DIP2C NA NA Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_JEW5HG4W +BS_8ZD6J47V CBWD1--GABRG3 frameshift CBWD1 NA GABRG3 NA NA NA NA NA NA ARRIBA 1 PT_4347ZBEX +BS_8ZD6J47V ELOA--IFNLR1 frameshift ELOA NA IFNLR1 NA NA NA NA NA NA ARRIBA 1 PT_4347ZBEX +BS_8ZY4GST0 C22orf39--IL17RA in-frame C22orf39 NA IL17RA NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_V1HNAC2Q +BS_8ZY4GST0 CARS--BRSK2 in-frame CARS NA BRSK2 NA CosmicCensus, Oncogene Kinase, Kinase NA NA NA STARFUSION, ARRIBA 2 PT_V1HNAC2Q +BS_8ZY4GST0 HIRA--IL17RA frameshift HIRA NA IL17RA NA TumorSuppressorGene NA NA NA NA STARFUSION, ARRIBA 2 PT_V1HNAC2Q +BS_8ZY4GST0 HIRA--IL17RA in-frame HIRA NA IL17RA NA TumorSuppressorGene NA NA NA NA STARFUSION, ARRIBA 2 PT_V1HNAC2Q +BS_8ZY4GST0 ST7--MET in-frame ST7 NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion STARFUSION, ARRIBA 2 PT_V1HNAC2Q +BS_91VYM11A ASB7--SEPT10P1 frameshift ASB7 NA SEPT10P1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_91VYM11A TARSL2--WFS1 in-frame TARSL2 NA WFS1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_91VYM11A TARSL2--WFS1 frameshift TARSL2 NA WFS1 NA NA NA NA NA NA STARFUSION 1 PT_MDWPRDBT +BS_97M1E2DW HNRNPA2B1--MET frameshift HNRNPA2B1 NA MET NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_B38P3Y5T +BS_97M1E2DW HNRNPA2B1--MET in-frame HNRNPA2B1 NA MET NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_B38P3Y5T +BS_9GJ23RHH PHLPP1--GDAP1 in-frame PHLPP1 NA GDAP1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_M2J30CF7 +BS_9M5XJ10G SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_VH6S71AC +BS_9XVACXP0 CCDC88A--ALK in-frame CCDC88A NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_387VK1T9 +BS_A0DYVX9J CCND2--ADARB2 in-frame CCND2 NA ADARB2 NA CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_QDGVJKE0 +BS_A0DYVX9J DIP2B--SLCO1B7 in-frame DIP2B NA SLCO1B7 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_QDGVJKE0 +BS_A0DYVX9J EHMT1--C9orf135 in-frame EHMT1 NA C9orf135 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_QDGVJKE0 +BS_A0DYVX9J GNAZ--SFI1 in-frame GNAZ NA SFI1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_QDGVJKE0 +BS_A0DYVX9J GNAZ--SFI1 frameshift GNAZ NA SFI1 NA NA NA NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J MYL6--LIMA1 frameshift MYL6 NA LIMA1 NA NA TumorSuppressorGene NA NA NA ARRIBA, STARFUSION 2 PT_QDGVJKE0 +BS_A0DYVX9J RXRA--KDM4C frameshift RXRA NA KDM4C NA TranscriptionFactor Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_QDGVJKE0 +BS_AKRHBPNZ FGFR2--SHTN1 in-frame FGFR2 NA SHTN1 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus NA NA NA ARRIBA, STARFUSION 2 PT_3NM45TQ8 +BS_AP0SZ364 PID1--RAF1 in-frame PID1 NA RAF1 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_PGVQ4XRZ +BS_AWH9757B CHD7--MYBL1 in-frame CHD7 NA MYBL1 NA NA Oncogene, TranscriptionFactor, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_59FJRPVX +BS_AWH9757B CHD7--MYBL1 frameshift CHD7 NA MYBL1 NA NA Oncogene, TranscriptionFactor, Oncogene NA NA NA ARRIBA 1 PT_59FJRPVX +BS_B1C6GZ84 SEPT11--FAM172A in-frame SEPT11 NA FAM172A NA NA TumorSuppressorGene NA NA NA ARRIBA, STARFUSION 2 PT_2QZJ4T95 +BS_B1C6GZ84 TRIO--ELL2 frameshift TRIO NA ELL2 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_2QZJ4T95 +BS_BC936YNZ BRAF--PID1 in-frame BRAF NA PID1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_KHX1WQ4H +BS_BKQZ550R KANK1--NTRK2 in-frame KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_41WETNRC +BS_BKQZ550R PLPPR1--SLC24A2 in-frame PLPPR1 NA SLC24A2 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_41WETNRC +BS_BMMY0H73 COPA--GPATCH4 frameshift COPA NA GPATCH4 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 +BS_BMMY0H73 COPA--GPATCH4 in-frame COPA NA GPATCH4 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 +BS_BMMY0H73 DDR2--EFNA1 frameshift DDR2 NA EFNA1 NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 +BS_BMMY0H73 KLHL15--UGT1A1 in-frame KLHL15 NA UGT1A1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 +BS_BMMY0H73 KLHL15--UGT1A10 in-frame KLHL15 NA UGT1A10 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 +BS_BMMY0H73 KLHL15--UGT1A3 in-frame KLHL15 NA UGT1A3 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 +BS_BMMY0H73 KLHL15--UGT1A4 in-frame KLHL15 NA UGT1A4 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 +BS_BMMY0H73 KLHL15--UGT1A5 in-frame KLHL15 NA UGT1A5 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 +BS_BMMY0H73 KLHL15--UGT1A6 in-frame KLHL15 NA UGT1A6 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 +BS_BMMY0H73 KLHL15--UGT1A7 in-frame KLHL15 NA UGT1A7 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 +BS_BMMY0H73 KLHL15--UGT1A8 in-frame KLHL15 NA UGT1A8 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 +BS_BMMY0H73 KLHL15--UGT1A9 in-frame KLHL15 NA UGT1A9 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 +BS_BMMY0H73 TAPBP--GPX6 frameshift TAPBP NA GPX6 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 +BS_BMMY0H73 TDRP--DEPTOR frameshift TDRP NA DEPTOR NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 +BS_BWBDH9GM PAX3--AC079834.2/AC079834.1 frameshift PAX3 NA AC079834.2 AC079834.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JNEV57VK +BS_CREQ97QC FGFR2--INA in-frame FGFR2 NA INA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_BCN28SW9 +BS_CXVJK2FY AFDN--AFDN in-frame AFDN NA AFDN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CYVVA9AB +BS_CXVJK2FY CHD2--CHD2 in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CYVVA9AB +BS_CXVJK2FY COG6--COG6 frameshift COG6 NA COG6 NA NA NA NA NA NA ARRIBA 1 PT_CYVVA9AB +BS_CXVJK2FY MAP4K5--MAP4K5 frameshift MAP4K5 NA MAP4K5 NA Kinase Kinase NA NA NA ARRIBA 1 PT_CYVVA9AB +BS_CXVJK2FY PREX2--PREX2 frameshift PREX2 NA PREX2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_CYVVA9AB +BS_CXVJK2FY RALGAPB--RALGAPB in-frame RALGAPB NA RALGAPB NA NA NA NA NA NA ARRIBA 1 PT_CYVVA9AB +BS_CXVJK2FY TBCK--TBCK frameshift TBCK NA TBCK NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_CYVVA9AB +BS_CXVJK2FY USP24--USP24 frameshift USP24 NA USP24 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CYVVA9AB +BS_CZ3ER8DY CHD2--CHD2 in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_ECMZCNTF +BS_CZ3NA7KV CAPS2--CAPS2 frameshift CAPS2 NA CAPS2 NA NA NA NA NA NA ARRIBA 1 PT_B5K3A4F4 +BS_CZ3NA7KV CHD2--CHD2 in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_B5K3A4F4 +BS_CZ3NA7KV CHKA--SPTY2D1 in-frame CHKA NA SPTY2D1 NA Oncogene, Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_B5K3A4F4 +BS_CZ3NA7KV DNAH11--DNAH11 frameshift DNAH11 NA DNAH11 NA NA NA NA NA NA ARRIBA 1 PT_B5K3A4F4 +BS_CZ3NA7KV SLC1A2--EIF3F frameshift SLC1A2 NA EIF3F NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_B5K3A4F4 +BS_CZ3NA7KV SYTL2--CHKA in-frame SYTL2 NA CHKA NA NA Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_B5K3A4F4 +BS_CZ3NA7KV TBCK--TBCK frameshift TBCK NA TBCK NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_B5K3A4F4 +BS_CZ3NA7KV USP24--USP24 frameshift USP24 NA USP24 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_B5K3A4F4 +BS_CZ82ANWP PDGFB--LRP1 in-frame PDGFB NA LRP1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_868QRW9G +BS_D29RPBSZ PAX3--AC079834.2/AC079834.1 frameshift PAX3 NA AC079834.2 AC079834.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JNEV57VK +BS_D9GEXXHX UVRAG--AP003049.2 frameshift UVRAG NA AP003049.2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_AQWDQW27 +BS_DBDXCXT5 NR6A1--DENND1A frameshift NR6A1 NA DENND1A NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_HFQNKP5X +BS_DHA5FMVW ICAM1--QTRT1 frameshift ICAM1 NA QTRT1 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_ND34A6PR +BS_DHA5FMVW ICAM1--QTRT1 in-frame ICAM1 NA QTRT1 NA Oncogene NA NA NA NA ARRIBA 1 PT_ND34A6PR +BS_DRY58DTF MBNL2--RERGL frameshift MBNL2 NA RERGL NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4PJA6KT +BS_E1CGF3KV MYB--QKI in-frame MYB NA QKI NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA, STARFUSION 2 PT_2PRV78FX +BS_E1CGF3KV QKI--CDC5L in-frame QKI NA CDC5L NA TumorSuppressorGene, CosmicCensus TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_2PRV78FX +BS_E3BAT4C1 SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_F3S9PB94 +BS_E60JZ9Z3 MBNL2--RERGL frameshift MBNL2 NA RERGL NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4PJA6KT +BS_E60JZ9Z3 TDRD3--CGNL1 in-frame TDRD3 NA CGNL1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_Z4PJA6KT +BS_E94QRJDW RNF130--BRAF in-frame RNF130 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_20ZM6THA +BS_EBMCTR80 DIAPH2--NTRK2 in-frame DIAPH2 NA NTRK2 NA NA Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_8R00BMHH +BS_EBMCTR80 NTRK2--DIAPH2 in-frame NTRK2 NA DIAPH2 NA Oncogene, Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_8R00BMHH +BS_EJ9JKM1C ADCY9--CA5B frameshift ADCY9 NA CA5B NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_HFQNKP5X +BS_EJ9JKM1C NR6A1--DENND1A frameshift NR6A1 NA DENND1A NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_HFQNKP5X +BS_EK5PCKY0 CAPS2--CAPS2 frameshift CAPS2 NA CAPS2 NA NA NA NA NA NA ARRIBA 1 PT_GFTCNWQ0 +BS_EK5PCKY0 CHD2--CHD2 in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_GFTCNWQ0 +BS_EK5PCKY0 COG6--COG6 in-frame COG6 NA COG6 NA NA NA NA NA NA ARRIBA 1 PT_GFTCNWQ0 +BS_EK5PCKY0 DNAH11--DNAH11 in-frame DNAH11 NA DNAH11 NA NA NA NA NA NA ARRIBA 1 PT_GFTCNWQ0 +BS_EK5PCKY0 DST--DST in-frame DST NA DST NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GFTCNWQ0 +BS_EK5PCKY0 FREM1--FREM1 frameshift FREM1 NA FREM1 NA NA NA NA NA NA ARRIBA 1 PT_GFTCNWQ0 +BS_EK5PCKY0 SHPRH--SHPRH frameshift SHPRH NA SHPRH NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_GFTCNWQ0 +BS_EK5PCKY0 TBCK--TBCK frameshift TBCK NA TBCK NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_GFTCNWQ0 +BS_EK5PCKY0 USP24--USP24 frameshift USP24 NA USP24 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GFTCNWQ0 +BS_EK5PCKY0 VPS13C--VPS13C in-frame VPS13C NA VPS13C NA NA NA NA NA NA ARRIBA 1 PT_GFTCNWQ0 +BS_F0JB4EAK CINP--TDRD9 in-frame CINP NA TDRD9 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_KBFM551M +BS_F4E8R9VY FGFR2--SHTN1 in-frame FGFR2 NA SHTN1 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus NA NA NA ARRIBA, STARFUSION 2 PT_8ECE2D92 +BS_FAQQ0GCQ SUMF1--BFSP2 in-frame SUMF1 NA BFSP2 NA NA Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_EPFX7V9H +BS_FCAKKZ20 CNKSR2--XG in-frame CNKSR2 NA XG NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_9S6WMQ92 +BS_FCAKKZ20 MFSD14B--RTFDC1 in-frame MFSD14B NA RTFDC1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_9S6WMQ92 +BS_FCAKKZ20 RTFDC1--MFSD14B in-frame RTFDC1 NA MFSD14B NA NA NA NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_FCAKKZ20 STX8--CRLF3 frameshift STX8 NA CRLF3 NA NA NA NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_FCAKKZ20 SYN1--OTUD5 in-frame SYN1 NA OTUD5 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_9S6WMQ92 +BS_FCAKKZ20 VIPR2--VIPR2/PIP5K1P2 frameshift VIPR2 NA VIPR2 PIP5K1P2 NA NA NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_FTKPQ5FZ FAM89B--C11orf95 frameshift FAM89B NA C11orf95 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_VR8T8JX8 +BS_G63HYD6N AFDN--AFDN in-frame AFDN NA AFDN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N CHD2--CHD2 in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N COG6--COG6 in-frame COG6 NA COG6 NA NA NA NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N CTAGE5--CTAGE5 in-frame CTAGE5 NA CTAGE5 NA NA NA NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N DST--DST in-frame DST NA DST NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N FREM1--FREM1 in-frame FREM1 NA FREM1 NA NA NA NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N RALGAPB--RALGAPB in-frame RALGAPB NA RALGAPB NA NA NA NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N RELA--MACROD1 in-frame RELA NA MACROD1 NA Oncogene, TranscriptionFactor Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_PKP1250P +BS_G63HYD6N SHPRH--SHPRH frameshift SHPRH NA SHPRH NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N VPS13C--VPS13C in-frame VPS13C NA VPS13C NA NA NA NA NA NA ARRIBA 1 PT_PKP1250P +BS_GE2RVZE6 UNC5C--GRIA2 in-frame UNC5C NA GRIA2 NA TumorSuppressorGene NA NA NA NA ARRIBA, STARFUSION 2 PT_TKWTTRQ7 +BS_GFM6EA61 ADCY9--CA5B frameshift ADCY9 NA CA5B NA NA NA NA NA NA ARRIBA 1 PT_HFQNKP5X +BS_GFM6EA61 NR6A1--DENND1A frameshift NR6A1 NA DENND1A NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_HFQNKP5X +BS_GW0GKWMS PGBD5--ADORA1 frameshift PGBD5 NA ADORA1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_P2NGYMG5 +BS_GWSJ4Z9H ADARB2--MAPK1 frameshift ADARB2 NA MAPK1 NA Oncogene CosmicCensus, Oncogene, Kinase NA NA NA STARFUSION, ARRIBA 2 PT_9GKVQ9QS +BS_GWSJ4Z9H GOLGA4--DCAF1 in-frame GOLGA4 NA DCAF1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_9GKVQ9QS +BS_GXTFW99H BCL2L13--IGLV6-57 in-frame BCL2L13 NA IGLV6-57 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_HNZNZ635 +BS_GYA4V1RD BRAF--HIPK2 frameshift BRAF NA HIPK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_XWVQW6JX +BS_H0QWRJE2 ASB7--SEPT10P1 frameshift ASB7 NA SEPT10P1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_H0QWRJE2 TARSL2--WFS1 in-frame TARSL2 NA WFS1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_H0QWRJE2 TARSL2--WFS1 frameshift TARSL2 NA WFS1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_MDWPRDBT +BS_HC44ZA0V ARID1B--PLAGL1 in-frame ARID1B NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_8RB7TPS2 +BS_HC44ZA0V KIF6--FAM26F frameshift KIF6 NA FAM26F NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_8RB7TPS2 +BS_HC44ZA0V QKI--ARID1B in-frame QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_8RB7TPS2 +BS_HD4EJYE3 VIPR2--VIPR2/PIP5K1P2 frameshift VIPR2 NA VIPR2 PIP5K1P2 NA NA NA NA NA ARRIBA 1 PT_EZS4SRH6 +BS_HF3RNN2T SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_DFXQFYPV +BS_HHPA8NJ2 SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_QW5VW2PY +BS_HKZENFDA SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_DESHZ91V +BS_HX0S30NE CAPZA2--BRAF frameshift CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_H45M7M2T +BS_HX0S30NE CAPZA2--BRAF in-frame CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_H45M7M2T +BS_HX0S30NE KLHDC10--COPG2 in-frame KLHDC10 NA COPG2 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_H45M7M2T +BS_HZ707C55 FANK1--CAMK1D frameshift FANK1 NA CAMK1D NA NA Kinase, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_ZZRBX5JT +BS_HZE3KYZ1 ARHGAP39--NRBP2 frameshift ARHGAP39 NA NRBP2 NA NA Kinase, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_E4ECAFEN +BS_HZE3KYZ1 RALYL--SAMD12 frameshift RALYL NA SAMD12 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_E4ECAFEN +BS_HZE3KYZ1 RALYL--SAMD12 in-frame RALYL NA SAMD12 NA NA NA NA NA NA ARRIBA 1 PT_E4ECAFEN +BS_HZRM07TW TNKS--NCALD in-frame TNKS NA NCALD NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_EDWA0XTP +BS_HZRM07TW TNKS--NCALD frameshift TNKS NA NCALD NA NA NA NA NA NA ARRIBA 1 PT_EDWA0XTP +BS_J70GK8SM C11orf95--MAML2 in-frame C11orf95 NA MAML2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_QWR0EECG +BS_J8G4SH4Z SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_P4ZEFY19 +BS_JAEM78XS BTRC--TEX36 in-frame BTRC NA TEX36 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_82MX6J77 +BS_JB43XBCQ AUTS2--CARD11 in-frame AUTS2 NA CARD11 NA NA CosmicCensus, Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_1E3E6GMF +BS_JFR750KD AFAP1--NTRK2 in-frame AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_S2SQJVGK +BS_JGA9BP3A AFDN--SMTN in-frame AFDN NA SMTN NA CosmicCensus, Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_WE1CHTWK +BS_JGA9BP3A GNB1L--NF2 in-frame GNB1L NA NF2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_WE1CHTWK +BS_JGA9BP3A NF2--POLR2F frameshift NF2 NA POLR2F NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_WE1CHTWK +BS_JGA9BP3A RBFOX2--IGLC2 frameshift RBFOX2 NA IGLC2 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_WE1CHTWK +BS_JGA9BP3A ZNF552--MLC1 frameshift ZNF552 NA MLC1 NA TranscriptionFactor NA NA NA NA STARFUSION, ARRIBA 2 PT_WE1CHTWK +BS_JR5ATB7G MACF1--SLC6A18 in-frame MACF1 NA SLC6A18 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_8M6W215T +BS_JR5ATB7G PDE4D--AC009163.4 frameshift PDE4D NA AC009163.4 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_8M6W215T +BS_JR5ATB7G PDE4D--TMEM170A frameshift PDE4D NA TMEM170A NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_8M6W215T +BS_JXNZYGCR KSR2--KSR2 frameshift KSR2 NA KSR2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_3A87PCQK +BS_K17VQECG DNASE2--GNB1L frameshift DNASE2 NA GNB1L NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_KEQ53KRH +BS_K17VQECG MAP2K2--RTN4R frameshift MAP2K2 NA RTN4R NA Kinase, CosmicCensus, Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_KEQ53KRH +BS_K17VQECG SMARCA4--WIZ in-frame SMARCA4 NA WIZ NA TumorSuppressorGene, CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_KEQ53KRH +BS_K74PZET7 SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_ZG4J0EK0 +BS_K81DR8XG PAX3--NCOA2 in-frame PAX3 NA NCOA2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_GH6HM5QF +BS_KBEX4RT2 DDHD1--WWC1 in-frame DDHD1 NA WWC1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_84Q11Z5X +BS_KBEX4RT2 DDHD1--WWC1 frameshift DDHD1 NA WWC1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_84Q11Z5X +BS_KBEX4RT2 ERO1A--RNF180 frameshift ERO1A NA RNF180 NA NA TumorSuppressorGene NA NA NA STARFUSION, ARRIBA 2 PT_84Q11Z5X +BS_KBT7MQ6H DKK3--CSTF3 in-frame DKK3 NA CSTF3 NA TumorSuppressorGene NA NA NA NA ARRIBA, STARFUSION 2 PT_CYBYN18G +BS_KE56MMY0 ABR--AC134669.2 frameshift ABR NA AC134669.2 NA Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 ADCY9--AC093525.2 frameshift ADCY9 NA AC093525.2 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_KE56MMY0 ADCY9--ATP6V0C in-frame ADCY9 NA ATP6V0C NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_KE56MMY0 ADCY9--ATP6V0C frameshift ADCY9 NA ATP6V0C NA NA NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 RABEP1--APBB1IP frameshift RABEP1 NA APBB1IP NA CosmicCensus, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_KE56MMY0 ST5--MUC5AC in-frame ST5 NA MUC5AC NA TumorSuppressorGene, Oncogene Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_KR4MP5ET UVRAG--AP003049.2 frameshift UVRAG NA AP003049.2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_AQWDQW27 +BS_KSKZ9J7J MN1--CXXC5 in-frame MN1 NA CXXC5 NA CosmicCensus, Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_80NVYCBS +BS_KSKZ9J7J MN1--CXXC5 frameshift MN1 NA CXXC5 NA CosmicCensus, Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_80NVYCBS +BS_KVAJYZ6F PRKCA--SLC44A1 in-frame PRKCA NA SLC44A1 NA Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_JW2FDK4W +BS_KVAJYZ6F PRKCA--SLC44A1 frameshift PRKCA NA SLC44A1 NA Kinase NA NA NA NA ARRIBA 1 PT_JW2FDK4W +BS_KVAJYZ6F SLC44A1--PRKCA in-frame SLC44A1 NA PRKCA NA NA Kinase NA NA NA ARRIBA, STARFUSION 2 PT_JW2FDK4W +BS_KZPR01BD VPS53--AL022318.4 in-frame VPS53 NA AL022318.4 NA TumorSuppressorGene NA NA NA NA ARRIBA, STARFUSION 2 PT_3873YK5S +BS_KZPR01BD VPS53--APOBEC3D in-frame VPS53 NA APOBEC3D NA TumorSuppressorGene NA NA NA NA ARRIBA, STARFUSION 2 PT_3873YK5S +BS_M4TTKPNR C5orf42--C5orf42 in-frame C5orf42 NA C5orf42 NA NA NA NA NA NA ARRIBA 1 PT_YKVK5HTK +BS_M85CXHDV PPP1R12B--TM4SF5 in-frame PPP1R12B NA TM4SF5 NA NA NA NA NA NA ARRIBA 1 PT_6PP78VNE +BS_M8EA6R2A CBWD1--GABRG3 frameshift CBWD1 NA GABRG3 NA NA NA NA NA NA ARRIBA 1 PT_4347ZBEX +BS_M8EA6R2A ELOA--IFNLR1 frameshift ELOA NA IFNLR1 NA NA NA NA NA NA ARRIBA 1 PT_4347ZBEX +BS_M9C4RY4P SH3PXD2A--HTRA1 in-frame SH3PXD2A NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_NMZBRFYS +BS_M9C4RY4P SH3PXD2A--HTRA1 frameshift SH3PXD2A NA HTRA1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_NMZBRFYS +BS_MKM0EEN1 ITGA9--CLASP2 in-frame ITGA9 NA CLASP2 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_W4XVT4AJ +BS_MKM0EEN1 PHACTR1--HRASLS2 frameshift PHACTR1 NA HRASLS2 NA NA TumorSuppressorGene NA NA NA ARRIBA, STARFUSION 2 PT_W4XVT4AJ +BS_MKM0EEN1 PHACTR1--HRASLS2 in-frame PHACTR1 NA HRASLS2 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_W4XVT4AJ +BS_MT15SGJN CHD2--CHD2 in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_99S5BPE3 +BS_MT15SGJN FNBP4--ASRGL1 in-frame FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_99S5BPE3 +BS_MT15SGJN FNBP4--ASRGL1 frameshift FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA ARRIBA 1 PT_99S5BPE3 +BS_MV6ASWV9 SRGAP1--CDCP1 in-frame SRGAP1 NA CDCP1 NA NA TumorSuppressorGene NA NA NA ARRIBA, STARFUSION 2 PT_ESHACWF6 +BS_MX23ZY0Y BOD1--AC243725.1 frameshift BOD1 NA AC243725.1 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_MX23ZY0Y CCAR1--GRID1 frameshift CCAR1 NA GRID1 NA TumorSuppressorGene NA NA NA NA ARRIBA, STARFUSION 2 PT_Y5KY6KN9 +BS_MX23ZY0Y HIF1AN--AL162274.3/JAKMIP3 frameshift HIF1AN NA AL162274.3 JAKMIP3 NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_MX23ZY0Y PTDSS2--SBF2 in-frame PTDSS2 NA SBF2 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_MX23ZY0Y SLC30A9--AC093730.1 frameshift SLC30A9 NA AC093730.1 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_MX23ZY0Y SLC30A9--AC093730.1/TECRL frameshift SLC30A9 NA AC093730.1 TECRL NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_MX23ZY0Y UBE2R2--AC004870.3/TNS3 frameshift UBE2R2 NA AC004870.3 TNS3 NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_N5B2CZMH CHD7--VGLL3 in-frame CHD7 NA VGLL3 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_3SW2VHD5 +BS_N6N147BY TTYH1--DPRX/RNU6-698P frameshift TTYH1 NA DPRX RNU6-698P Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_X648RVMK +BS_N8J1DP02 FREM1--FREM1 frameshift FREM1 NA FREM1 NA NA NA NA NA NA ARRIBA 1 PT_VE0Q731Y +BS_NB42PWZN FNBP4--ASRGL1 frameshift FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA ARRIBA 1 PT_99S5BPE3 +BS_NB42PWZN FNBP4--ASRGL1 in-frame FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA ARRIBA 1 PT_99S5BPE3 +BS_NGHK9RZP AFDN--AFDN frameshift AFDN NA AFDN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP CAPS2--CAPS2 frameshift CAPS2 NA CAPS2 NA NA NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP CFAP43--CFAP43 frameshift CFAP43 NA CFAP43 NA NA NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP CHD2--CHD2 in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP COG6--COG6 frameshift COG6 NA COG6 NA NA NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP CTAGE5--CTAGE5 in-frame CTAGE5 NA CTAGE5 NA NA NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP DNAH11--DNAH11 in-frame DNAH11 NA DNAH11 NA NA NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP DST--DST in-frame DST NA DST NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP FREM1--FREM1 frameshift FREM1 NA FREM1 NA NA NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP MAP4K5--MAP4K5 frameshift MAP4K5 NA MAP4K5 NA Kinase Kinase NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP RALGAPB--RALGAPB in-frame RALGAPB NA RALGAPB NA NA NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP SHPRH--SHPRH frameshift SHPRH NA SHPRH NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP USP24--USP24 frameshift USP24 NA USP24 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGSG2KB6 GRIK3--WIPI2 frameshift GRIK3 NA WIPI2 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_KTRJ8TFY +BS_NGSG2KB6 GRIK3--WIPI2 in-frame GRIK3 NA WIPI2 NA NA NA NA NA NA ARRIBA 1 PT_KTRJ8TFY +BS_NJ4WPQVK PAIP1--GABRB1 in-frame PAIP1 NA GABRB1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_EV71W1JW +BS_NKRYMHEP SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_RT1J9P8J +BS_NNPEC7W1 ARHGEF28--AC143336.1/MAP1B frameshift ARHGEF28 NA AC143336.1 MAP1B NA NA NA NA NA ARRIBA 1 PT_59D00MBQ +BS_NNPEC7W1 SOD2--RAET1E-AS1 frameshift SOD2 NA RAET1E-AS1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_59D00MBQ +BS_NT9NZYFD KSR2--KSR2 frameshift KSR2 NA KSR2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_FC0EF5ZT +BS_NZ71XCG3 SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_7FQ6VECA +BS_P0QF87WC CRTAC1--IFFO2/AL137127.1 frameshift CRTAC1 NA IFFO2 AL137127.1 NA NA NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_P0QF87WC GPM6A--AC107214.2/RWDD4 frameshift GPM6A NA AC107214.2 RWDD4 NA NA NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_P0QF87WC SPEG--SNORD2/MIR3924 frameshift SPEG NA SNORD2 MIR3924 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_P9JP6JFA BOD1--AC243725.1 frameshift BOD1 NA AC243725.1 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_P9JP6JFA CCAR1--GRID1 frameshift CCAR1 NA GRID1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_P9JP6JFA HIF1AN--AL162274.3/JAKMIP3 frameshift HIF1AN NA AL162274.3 JAKMIP3 NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_P9JP6JFA PDGFC--PRDM5 frameshift PDGFC NA PRDM5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_P9JP6JFA PTDSS2--SBF2 in-frame PTDSS2 NA SBF2 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_P9JP6JFA SLC30A9--AC093730.1 frameshift SLC30A9 NA AC093730.1 NA NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_P9JP6JFA SLC30A9--AC093730.1/TECRL frameshift SLC30A9 NA AC093730.1 TECRL NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_P9JP6JFA UBE2R2--AC004870.3/TNS3 frameshift UBE2R2 NA AC004870.3 TNS3 NA NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_PQ6QEVE8 ALK--PPP1CB frameshift ALK NA PPP1CB NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_RGX23JFP +BS_PS0P3QJ3 KIF21A--ROS1 in-frame KIF21A NA ROS1 NA NA CosmicCensus, Oncogene, Kinase NA NA NA STARFUSION, ARRIBA 2 PT_6D9C46GC +BS_PXCPK5XS CD83--STMND1 in-frame CD83 NA STMND1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_1B1Z7BRQ +BS_PXCPK5XS SH3RF1--NEK1 frameshift SH3RF1 NA NEK1 NA NA Kinase, Kinase NA NA TCGAFusion STARFUSION, ARRIBA 2 PT_1B1Z7BRQ +BS_Q9V7A95C NCOA1--REST frameshift NCOA1 NA REST NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_1DRAVX4S +BS_Q9V7A95C PAX3--NCOA1 in-frame PAX3 NA NCOA1 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_1DRAVX4S +BS_QB7YGKN1 PRKCB--NRCAM frameshift PRKCB NA NRCAM NA TumorSuppressorGene, CosmicCensus, Kinase TumorSuppressorGene, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_9P7P6YAQ +BS_QB7YGKN1 PRKCB--NRCAM in-frame PRKCB NA NRCAM NA TumorSuppressorGene, CosmicCensus, Kinase TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_9P7P6YAQ +BS_QBR4WCQ2 ATF1--EWSR1 in-frame ATF1 NA EWSR1 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_6PFFSB6D +BS_QKT3TJVK DENND5B--KRAS in-frame DENND5B NA KRAS NA NA CosmicCensus, Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_8VRZRZ7R +BS_QKT3TJVK GALNT8--ERBB3 frameshift GALNT8 NA ERBB3 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA STARFUSION, ARRIBA 2 PT_8VRZRZ7R +BS_QKT3TJVK SLC16A7--KNTC1 in-frame SLC16A7 NA KNTC1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_8VRZRZ7R +BS_QKT3TJVK SLC16A7--KNTC1 frameshift SLC16A7 NA KNTC1 NA NA NA NA NA NA ARRIBA 1 PT_8VRZRZ7R +BS_QWNBZ9RJ TTYH1--DPRX/RNU6-698P frameshift TTYH1 NA DPRX RNU6-698P Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_00G007DM +BS_QWTE1CWR ABR--WASF3 frameshift ABR NA WASF3 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_1H2REHT2 +BS_QWTE1CWR CRK--MICU2 in-frame CRK NA MICU2 NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR KIF14--SRGAP2 in-frame KIF14 NA SRGAP2 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_1H2REHT2 +BS_QWTE1CWR RPAIN--MINK1 in-frame RPAIN NA MINK1 NA NA Kinase NA NA NA ARRIBA, STARFUSION 2 PT_1H2REHT2 +BS_QWTE1CWR WASF3--DNAH9 in-frame WASF3 NA DNAH9 NA NA Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_1H2REHT2 +BS_QWTE1CWR ZBED6--CENPF in-frame ZBED6 NA CENPF NA TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR ZC3H11A--CENPF in-frame ZC3H11A NA CENPF NA NA Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QXKRN6CR MAGI1--SYAP1 in-frame MAGI1 NA SYAP1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_RM5S859Q +BS_R7NTZR4C MPRIP--DRG2 in-frame MPRIP NA DRG2 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_0MXPTTM3 +BS_RCCN63K6 DAB2IP--VAV1 frameshift DAB2IP NA VAV1 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_RPC00TAJ +BS_S1KK7XRH C5orf42--C5orf42 frameshift C5orf42 NA C5orf42 NA NA NA NA NA NA ARRIBA 1 PT_YJBPEF4V +BS_S1M423AB SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_BRTVGGRK +BS_S2TA8R29 TRIM24--ROS1 in-frame TRIM24 NA ROS1 NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_4A2H0KNR +BS_S458NMKH AFAP1--NTRK2 in-frame AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_S2SQJVGK +BS_S458NMKH AFAP1--NTRK2 frameshift AFAP1 NA NTRK2 NA NA Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_S2SQJVGK +BS_S6Q7NKA3 MFSD14B--RTFDC1 in-frame MFSD14B NA RTFDC1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_9S6WMQ92 +BS_S6Q7NKA3 RTFDC1--MFSD14B in-frame RTFDC1 NA MFSD14B NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_9S6WMQ92 +BS_S6Q7NKA3 STX8--CRLF3 frameshift STX8 NA CRLF3 NA NA NA NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_S6Q7NKA3 VIPR2--VIPR2/PIP5K1P2 frameshift VIPR2 NA VIPR2 PIP5K1P2 NA NA NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_S71RJ8DH NF2--TTC28 frameshift NF2 NA TTC28 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_E6FTW238 +BS_SAA624A4 CFAP43--CFAP43 in-frame CFAP43 NA CFAP43 NA NA NA NA NA NA ARRIBA 1 PT_EG7PH32E +BS_SD8YBRBR FKBP4--ERC1 frameshift FKBP4 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_TPDB1WC8 +BS_SD8YBRBR FKBP4--ERC1 in-frame FKBP4 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_TPDB1WC8 +BS_SDZY6RZ3 C5orf42--C5orf42 in-frame C5orf42 NA C5orf42 NA NA NA NA NA NA ARRIBA 1 PT_5GQ76YZJ +BS_SFRQXM76 MYO1B--DNAH7 in-frame MYO1B NA DNAH7 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_DPVW4M1W +BS_SNVM7CZT BCL11A--ALK in-frame BCL11A NA ALK NA CosmicCensus, Oncogene, TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA STARFUSION, ARRIBA 2 PT_H2HT2WQX +BS_T1YHK6B7 GAB2--SERPING1 frameshift GAB2 NA SERPING1 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_DNH1VP67 +BS_T1YHK6B7 GAB2--SERPING1 in-frame GAB2 NA SERPING1 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_DNH1VP67 +BS_T3DGY9J9 NF1--ACACB in-frame NF1 NA ACACB NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_JSFBMK5V +BS_TE0GVDNG SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_2FK75B27 +BS_TGS109T3 ABHD8--GABRB1 in-frame ABHD8 NA GABRB1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_18QG3Z4H +BS_THSPSG2Z ITFG1--ABCC11 frameshift ITFG1 NA ABCC11 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_M0FVZ88D +BS_TJTEF70D ASB7--SEPT10P1 frameshift ASB7 NA SEPT10P1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_TJTEF70D TARSL2--WFS1 in-frame TARSL2 NA WFS1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_TJTEF70D TARSL2--WFS1 frameshift TARSL2 NA WFS1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_MDWPRDBT +BS_TK84K675 TARSL2--WFS1 in-frame TARSL2 NA WFS1 NA NA NA NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_TK84K675 TARSL2--WFS1 frameshift TARSL2 NA WFS1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_MDWPRDBT +BS_TM9MH0RP ARHGEF28--AC143336.1/MAP1B frameshift ARHGEF28 NA AC143336.1 MAP1B NA NA NA NA NA ARRIBA 1 PT_59D00MBQ +BS_TM9MH0RP SOD2--RAET1E-AS1 frameshift SOD2 NA RAET1E-AS1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_59D00MBQ +BS_TW8DQH8J STX8--CRLF3 frameshift STX8 NA CRLF3 NA NA NA NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_V4W81SFC YAP1--MAMLD1 in-frame YAP1 NA MAMLD1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_W17NV5YG +BS_V72H4RQS SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_KN25EYMG +BS_VF5XWFXD PAX3--AC079834.2/AC079834.1 frameshift PAX3 NA AC079834.2 AC079834.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JNEV57VK +BS_VJ2S5DVS CHD9--PHKB in-frame CHD9 NA PHKB NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_MT27S7S4 +BS_VJ2S5DVS KIF21A--DYNLRB2 frameshift KIF21A NA DYNLRB2 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_MT27S7S4 +BS_VJAC9H58 CHD9--VGLL3 in-frame CHD9 NA VGLL3 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_SABHZ7XX +BS_VMEX27TN SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_5AF1501D +BS_VVFBW0YH SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_7QKGGMKV +BS_VVTHDRBD LUZP2--SLC1A2 in-frame LUZP2 NA SLC1A2 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_Y76A7PBA +BS_VVTHDRBD SLC1A2--LUZP2 in-frame SLC1A2 NA LUZP2 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_Y76A7PBA +BS_W1385R8Y LIPA--RGS2 in-frame LIPA NA RGS2 NA NA Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_Y585X1BS +BS_W1385R8Y MAD1L1--PHF2 in-frame MAD1L1 NA PHF2 NA TumorSuppressorGene, Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_Y585X1BS +BS_W4H1D4Y6 CTNND2--EXOC3 frameshift CTNND2 NA EXOC3 NA CosmicCensus, Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_X7HC5YCY +BS_W4H1D4Y6 MACF1--TMEM53 in-frame MACF1 NA TMEM53 NA Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_X7HC5YCY +BS_W4H1D4Y6 MACF1--TMEM53 frameshift MACF1 NA TMEM53 NA Oncogene NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 NFKBID--ACTN4 in-frame NFKBID NA ACTN4 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X7HC5YCY +BS_W4H1D4Y6 PDCD6--SLC9A3 in-frame PDCD6 NA SLC9A3 NA Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_X7HC5YCY +BS_W4H1D4Y6 PTPRS--SLC6A3 frameshift PTPRS NA SLC6A3 NA NA Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_X7HC5YCY +BS_W4H1D4Y6 SLC12A7--AHRR frameshift SLC12A7 NA AHRR NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA STARFUSION, ARRIBA 2 PT_X7HC5YCY +BS_W4H1D4Y6 ST20-MTHFS--CEMIP frameshift ST20-MTHFS NA CEMIP NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_X7HC5YCY +BS_W4HGV6E7 MYB--QKI in-frame MYB NA QKI NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA, STARFUSION 2 PT_2C63FJAM +BS_W4HGV6E7 MYB--QKI frameshift MYB NA QKI NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_2C63FJAM +BS_W4HGV6E7 QKI--C6orf58 frameshift QKI NA C6orf58 NA TumorSuppressorGene, CosmicCensus NA NA NA NA ARRIBA, STARFUSION 2 PT_2C63FJAM +BS_W644VEVE B3GALNT2--LYST in-frame B3GALNT2 NA LYST NA NA NA NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_XA98HG1C +BS_W644VEVE B4GALNT3--ERC1 in-frame B4GALNT3 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_XA98HG1C +BS_W644VEVE B4GALNT3--ERC1 frameshift B4GALNT3 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--NINJ2 in-frame CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--NINJ2 frameshift CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE FBXL14--CACNA1C in-frame FBXL14 NA CACNA1C NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_XA98HG1C +BS_W644VEVE FBXL14--CACNA1C frameshift FBXL14 NA CACNA1C NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_XA98HG1C +BS_W644VEVE FBXL14--TSPAN9 in-frame FBXL14 NA TSPAN9 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_XA98HG1C +BS_W644VEVE WNK1--CCDC77 frameshift WNK1 NA CCDC77 NA Kinase, Kinase NA NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_XA98HG1C +BS_W644VEVE WNK1--CCDC77 in-frame WNK1 NA CCDC77 NA Kinase, Kinase NA NA NA TCGAFusion ARRIBA 1 PT_XA98HG1C +BS_W6AC5J3C FGFR2--CTNNA3 in-frame FGFR2 NA CTNNA3 NA Kinase, CosmicCensus, Oncogene, Kinase TumorSuppressorGene NA NA NA ARRIBA, STARFUSION 2 PT_16EJ7BZ9 +BS_W72364MN EYA1--PHF20L1 frameshift EYA1 NA PHF20L1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_PKCTFSV2 +BS_W72364MN PHF20L1--EYA1 frameshift PHF20L1 NA EYA1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_PKCTFSV2 +BS_W80TJC27 AKAP8L--RAB1B frameshift AKAP8L NA RAB1B NA TranscriptionFactor NA NA NA NA ARRIBA, STARFUSION 2 PT_R6WWH1QX +BS_W80TJC27 C19orf60--SH3KBP1 frameshift C19orf60 NA SH3KBP1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_R6WWH1QX +BS_W80TJC27 C19orf60--SH3KBP1 in-frame C19orf60 NA SH3KBP1 NA NA NA NA NA NA ARRIBA 1 PT_R6WWH1QX +BS_W80TJC27 CHD2--CHD2 in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_R6WWH1QX +BS_W80TJC27 PREX2--PREX2 in-frame PREX2 NA PREX2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_R6WWH1QX +BS_W80TJC27 USP24--USP24 frameshift USP24 NA USP24 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_R6WWH1QX +BS_W80TJC27 VPS51--YIF1A in-frame VPS51 NA YIF1A NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_R6WWH1QX +BS_WAXJY4XQ CRTAC1--IFFO2/AL137127.1 frameshift CRTAC1 NA IFFO2 AL137127.1 NA NA NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_WAXJY4XQ GPM6A--AC107214.2/RWDD4 frameshift GPM6A NA AC107214.2 RWDD4 NA NA NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_WAXJY4XQ SPEG--SNORD2/MIR3924 frameshift SPEG NA SNORD2 MIR3924 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_WGK8ZMVA BCOR--EP300 frameshift BCOR NA EP300 NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_DNAJYFZT +BS_WGK8ZMVA EP300--BCOR in-frame EP300 NA BCOR NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_DNAJYFZT +BS_WJ9H4NZZ CRTAC1--IFFO2/AL137127.1 frameshift CRTAC1 NA IFFO2 AL137127.1 NA NA NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_WJ9H4NZZ GPM6A--AC107214.2/RWDD4 frameshift GPM6A NA AC107214.2 RWDD4 NA NA NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_WJ9H4NZZ SPEG--SNORD2/MIR3924 frameshift SPEG NA SNORD2 MIR3924 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_WKESC3XN ABR--WASF3 frameshift ABR NA WASF3 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_1H2REHT2 +BS_WKESC3XN CRK--MICU2 in-frame CRK NA MICU2 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_1H2REHT2 +BS_WKESC3XN DPYSL2--PEBP4 frameshift DPYSL2 NA PEBP4 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_1H2REHT2 +BS_WKESC3XN KIF14--SRGAP2 in-frame KIF14 NA SRGAP2 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_1H2REHT2 +BS_WKESC3XN RPAIN--MINK1 in-frame RPAIN NA MINK1 NA NA Kinase NA NA NA ARRIBA, STARFUSION 2 PT_1H2REHT2 +BS_WKESC3XN WASF3--DNAH9 in-frame WASF3 NA DNAH9 NA NA Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_1H2REHT2 +BS_WKESC3XN ZBED6--CENPF in-frame ZBED6 NA CENPF NA TranscriptionFactor Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_1H2REHT2 +BS_WKESC3XN ZC3H11A--CENPF in-frame ZC3H11A NA CENPF NA NA Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_1H2REHT2 +BS_WMEHNDSK ASAP1--NDRG1 in-frame ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_B54PH840 +BS_WMEHNDSK ASAP1--NDRG1 frameshift ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK MTSS1--ZFAT frameshift MTSS1 NA ZFAT NA TumorSuppressorGene TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_B54PH840 +BS_WMEHNDSK MTSS1--ZFAT in-frame MTSS1 NA ZFAT NA TumorSuppressorGene TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_B54PH840 +BS_X0XXN9BK ENAH--PLCH2 frameshift ENAH NA PLCH2 NA Oncogene Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_Z4BF2NSB +BS_X0XXN9BK OSTM1--QKI in-frame OSTM1 NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA STARFUSION, ARRIBA 2 PT_Z4BF2NSB +BS_X0XXN9BK ZNF704--MRPS28 in-frame ZNF704 NA MRPS28 NA TranscriptionFactor NA NA NA NA STARFUSION, ARRIBA 2 PT_Z4BF2NSB +BS_X23724NJ HMGA2--DTX1 frameshift HMGA2 NA DTX1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA, STARFUSION 2 PT_Y8RNS9JE +BS_X2QTK3QD GSE1--FAM19A5 frameshift GSE1 NA FAM19A5 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_T2M1338J +BS_X4DD4KSZ ARHGAP42--YAP1 frameshift ARHGAP42 NA YAP1 NA NA TumorSuppressorGene, Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_A06JR0E5 +BS_X67GTEM6 ABCC9--ABCC9 in-frame ABCC9 NA ABCC9 NA NA NA NA NA NA ARRIBA 1 PT_F9G665B1 +BS_XF0ZX2B3 CHD2--CHD2 in-frame CHD2 NA CHD2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_GAM3E6M3 +BS_XF0ZX2B3 DNAH11--DNAH11 in-frame DNAH11 NA DNAH11 NA NA NA NA NA NA ARRIBA 1 PT_GAM3E6M3 +BS_XG0DBWVT SNRNP70--AXL in-frame SNRNP70 NA AXL NA NA Kinase, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_Y660CKCB +BS_Y3G1X98S SSR1--MAP1LC3A in-frame SSR1 NA MAP1LC3A NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_7M2PGCBV +BS_Y8D1F5WW SYCP1--SYCP1 frameshift SYCP1 NA SYCP1 NA NA NA NA NA NA ARRIBA 1 PT_ABMAQYY2 +BS_YB07VF1X ADCY9--CA5B frameshift ADCY9 NA CA5B NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_HFQNKP5X +BS_YB07VF1X NR6A1--DENND1A frameshift NR6A1 NA DENND1A NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_HFQNKP5X +BS_YB2RXRHT CAPZA2--BRAF frameshift CAPZA2 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_H45M7M2T +BS_YB2RXRHT KLHDC10--COPG2 in-frame KLHDC10 NA COPG2 NA NA NA NA NA NA ARRIBA 1 PT_H45M7M2T +BS_YCREDZTJ ATP8A1--GRXCR1 frameshift ATP8A1 NA GRXCR1 NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_N3HVMV06 +BS_YEQVW4ND KANK1--NTRK2 in-frame KANK1 NA NTRK2 NA TumorSuppressorGene Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_NA8NZ0BN +BS_Z1A875MW GTF2I--BRAF in-frame GTF2I NA BRAF NA TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_D9NTSYSC +BS_Z3RCA1T9 ITFG2--ANO2 in-frame ITFG2 NA ANO2 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_C9YDTZPA +BS_Z3RCA1T9 ITFG2--ANO2 frameshift ITFG2 NA ANO2 NA NA NA NA NA NA ARRIBA 1 PT_C9YDTZPA +BS_Z7890YNR FNBP4--ASRGL1 in-frame FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA ARRIBA 1 PT_99S5BPE3 +BS_Z7890YNR FNBP4--ASRGL1 frameshift FNBP4 NA ASRGL1 NA Oncogene NA NA NA NA ARRIBA 1 PT_99S5BPE3 +BS_Z8F3GM85 FAM171A1--FRMD4A in-frame FAM171A1 NA FRMD4A NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_FZP24XYK +BS_Z8YZ6QGS ATP11A--SLX4IP in-frame ATP11A NA SLX4IP NA NA NA NA NA NA ARRIBA, STARFUSION 2 PT_S0Q27J13 +BS_Z8YZ6QGS ATP11A--SLX4IP frameshift ATP11A NA SLX4IP NA NA NA NA NA NA ARRIBA 1 PT_S0Q27J13 +BS_ZD5HN296 EHMT1--MAN1B1 in-frame EHMT1 NA MAN1B1 NA Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_89XRZBSG +BS_ZD5HN296 PEX5--SLCO1C1 frameshift PEX5 NA SLCO1C1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_89XRZBSG +BS_ZD5HN296 PEX5--SLCO1C1 in-frame PEX5 NA SLCO1C1 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_89XRZBSG +BS_ZD5HN296 SPATS2L--SLC25A12 in-frame SPATS2L NA SLC25A12 NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_89XRZBSG +BS_ZD5HN296 XPO6--AHSP frameshift XPO6 NA AHSP NA NA NA NA NA NA STARFUSION, ARRIBA 2 PT_89XRZBSG +BS_ZVWE73JZ ARHGEF28--AC143336.1/MAP1B frameshift ARHGEF28 NA AC143336.1 MAP1B NA NA NA NA NA ARRIBA 1 PT_59D00MBQ +BS_ZVWE73JZ SOD2--RAET1E-AS1 frameshift SOD2 NA RAET1E-AS1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_59D00MBQ +BS_ZVZDDW2G GPHN--FAM19A5 in-frame GPHN NA FAM19A5 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_E3ADF4ZB +BS_ZVZDDW2G NPAS3--SMARCB1 in-frame NPAS3 NA SMARCB1 NA TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_E3ADF4ZB +BS_ZVZDDW2G PCNX1--MNAT1 in-frame PCNX1 NA MNAT1 NA NA Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_E3ADF4ZB +BS_ZZWMD6FA ALK--PPP1CB frameshift ALK NA PPP1CB NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_RGX23JFP +BS_014EVM2D FAM131B--BRAF in-frame FAM131B NA BRAF NA CosmicCensus Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_S21ZTKPS +BS_03FT4S8B LINC01019--LINC01019/IRX1 other LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA ARRIBA 1 PT_5KRVE8E4 +BS_03FT4S8B MYO3A--MYO3A frameshift MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_5KRVE8E4 +BS_0448A413 EWSR1--FLI1 in-frame EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_VHS5RM2K +BS_044XZ8ST AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_QAX38GM7 +BS_044XZ8ST AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_QAX38GM7 +BS_044XZ8ST ANTXR1--BRAF in-frame ANTXR1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_QAX38GM7 +BS_044XZ8ST ANTXR1--BRAF frameshift ANTXR1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_QAX38GM7 +BS_044XZ8ST ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QAX38GM7 +BS_044XZ8ST FPGT-TNNI3K--FPGT-TNNI3K frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_QAX38GM7 +BS_044XZ8ST KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_QAX38GM7 +BS_044XZ8ST KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_QAX38GM7 +BS_044XZ8ST KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QAX38GM7 +BS_044XZ8ST NUP214--AIF1L/NUP214 frameshift NUP214 NA AIF1L NUP214 CosmicCensus, Oncogene NA NA CosmicCensus, Oncogene NA ARRIBA 1 PT_QAX38GM7 +BS_052PZFMK AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_N3205P0D +BS_063ERW0R ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3V5GTCJR +BS_063ERW0R FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_3V5GTCJR +BS_063ERW0R KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_3V5GTCJR +BS_06AMMCXR KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_Q3EP24V1 +BS_06XH7EVF FOS--LINC01258 frameshift FOS NA LINC01258 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_G8DRDA33 +BS_07ANYSYQ AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_S4H6KA09 +BS_07ANYSYQ AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_S4H6KA09 +BS_07ANYSYQ ATM--ATP2B2 frameshift ATM NA ATP2B2 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_S4H6KA09 +BS_07ANYSYQ C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_S4H6KA09 +BS_07ANYSYQ CNTN4--ARHGAP1 other CNTN4 NA ARHGAP1 NA Oncogene NA NA NA NA ARRIBA 1 PT_S4H6KA09 +BS_07ANYSYQ ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_S4H6KA09 +BS_07ANYSYQ GRK2--TAMM41 frameshift GRK2 NA TAMM41 NA Kinase NA NA NA NA ARRIBA 1 PT_S4H6KA09 +BS_07ANYSYQ INPPL1--GRIK4 frameshift INPPL1 NA GRIK4 NA Oncogene NA NA NA NA ARRIBA 1 PT_S4H6KA09 +BS_07ANYSYQ INPPL1--GRIK4 other INPPL1 NA GRIK4 NA Oncogene NA NA NA NA ARRIBA 1 PT_S4H6KA09 +BS_07ANYSYQ KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_S4H6KA09 +BS_07ANYSYQ KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_S4H6KA09 +BS_07ANYSYQ KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_S4H6KA09 +BS_07ANYSYQ RCOR2/NAA40--MARK2 other RCOR2 NAA40 MARK2 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_S4H6KA09 +BS_07ANYSYQ RPS6KA3--AL807740.1/AL807742.1 frameshift RPS6KA3 NA AL807740.1 AL807742.1 Kinase NA NA NA NA ARRIBA 1 PT_S4H6KA09 +BS_07ANYSYQ VGLL4--AC099669.2/ZKSCAN7 frameshift VGLL4 NA AC099669.2 ZKSCAN7 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_S4H6KA09 +BS_07ANYSYQ ZNF143--MIR4299/AC131935.2 frameshift ZNF143 NA MIR4299 AC131935.2 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_S4H6KA09 +BS_09R7GDA7 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_0PT33SCF +BS_09R7GDA7 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0PT33SCF +BS_09R7GDA7 OPCML--ADGRL1 in-frame OPCML NA ADGRL1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_0PT33SCF +BS_09Z7TC35 ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_YHTK536P +BS_09Z7TC35 TOM1L2--AC005180.2 other TOM1L2 NA AC005180.2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_YHTK536P +BS_0C7VZC0A MCM9--MCM9 other MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_VAJN5QP8 +BS_0HW7W7SD WNK3--WNK3 in-frame WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_C73C5BBZ +BS_0J9SHHSC KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_WVC247PK +BS_0SCXXM6N HMG20A--TSPAN3 other HMG20A NA TSPAN3 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_SMDEQVHJ +BS_0SCXXM6N KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_SMDEQVHJ +BS_0T17SY47 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_BQ8BQ01J +BS_0T17SY47 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_BQ8BQ01J +BS_0T17SY47 CNTN4--CNTN4 in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BQ8BQ01J +BS_0T17SY47 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BQ8BQ01J +BS_0T17SY47 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BQ8BQ01J +BS_0T17SY47 JAKMIP1--JAKMIP1 in-frame JAKMIP1 NA JAKMIP1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BQ8BQ01J +BS_0T17SY47 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_BQ8BQ01J +BS_0T17SY47 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_BQ8BQ01J +BS_0T17SY47 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BQ8BQ01J +BS_0T17SY47 MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_BQ8BQ01J +BS_0T17SY47 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_BQ8BQ01J +BS_0T17SY47 RGS7--RGS7 frameshift RGS7 NA RGS7 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_BQ8BQ01J +BS_0VXZCRJS AC092691.1--DUX4L2/DUX4 other AC092691.1 NA DUX4L2 DUX4 NA NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_40HTPY49 +BS_0VXZCRJS EBF4--ASB16-AS1 frameshift EBF4 NA ASB16-AS1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_40HTPY49 +BS_0VXZCRJS TRIO--RETREG1 frameshift TRIO NA RETREG1 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_40HTPY49 +BS_0VXZCRJS TRIO--RETREG1 other TRIO NA RETREG1 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_40HTPY49 +BS_0WQJP6ZG C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_Y6Y9JJ9P +BS_0WVJYM9R ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_MNR94DEV +BS_0WVJYM9R KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_MNR94DEV +BS_0WVJYM9R LMNTD1--LMNTD1 frameshift LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_MNR94DEV +BS_0WVJYM9R RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_MNR94DEV +BS_0X9EGHY2 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_3KK1F95W +BS_0XEG6SNV C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_82A9SDRN +BS_0XEG6SNV FAM129B--RALGDS frameshift FAM129B NA RALGDS NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_82A9SDRN +BS_0XEG6SNV FRMD8--SHC3/CKS2 other FRMD8 NA SHC3 CKS2 Oncogene NA NA Oncogene NA ARRIBA 1 PT_82A9SDRN +BS_0XEG6SNV GNAQ--SETX in-frame GNAQ NA SETX NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_82A9SDRN +BS_0XEG6SNV GNAQ--SETX frameshift GNAQ NA SETX NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_82A9SDRN +BS_0XEG6SNV NEK6--SCAI other NEK6 NA SCAI NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_82A9SDRN +BS_0Y66ZBWE ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_V2F0865M +BS_0Y66ZBWE MTSS1--MTSS1 frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_V2F0865M +BS_10APZRVT TSPAN18--EXT2 other TSPAN18 NA EXT2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_3D74J8RZ +BS_11WY983P SNTB2--AC109462.1/MMP2 frameshift SNTB2 NA AC109462.1 MMP2 NA NA NA Oncogene NA ARRIBA 1 PT_7A1PYTP9 +BS_13CGKADW FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_WGWMA5AZ +BS_13CGKADW MAD1L1--MAD1L1 frameshift MAD1L1 NA MAD1L1 NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_WGWMA5AZ +BS_13CGKADW PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WGWMA5AZ +BS_1607397Q IGH-@--MYC other IGH-@ NA MYC NA Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA STARFUSION 1 PT_7VSY72EK +BS_1607397Q IGH@--CASC11 other IGH@ NA CASC11 NA Oncogene NA NA NA NA STARFUSION 1 PT_7VSY72EK +BS_1607397Q MYC--IGHM other MYC NA IGHM NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7VSY72EK +BS_1607397Q MYC--MIR4537 other MYC NA MIR4537 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7VSY72EK +BS_1607397Q MYC--MIR4537/IGHJ6 other MYC NA MIR4537 IGHJ6 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7VSY72EK +BS_17WYVEEC KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_FKWCVXNC +BS_17WYVEEC NRCAM--CNTN1 other NRCAM NA CNTN1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_FKWCVXNC +BS_196BBNEJ MYO3A--MYO3A frameshift MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_BNARR0N6 +BS_1A6MQ9ZA ACACB--NF1 in-frame ACACB NA NF1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JSFBMK5V +BS_1A6MQ9ZA CTIF--MSRB3 frameshift CTIF NA MSRB3 NA Oncogene NA NA NA NA ARRIBA 1 PT_JSFBMK5V +BS_1A6MQ9ZA PTPRT--LINC01527 frameshift PTPRT NA LINC01527 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_JSFBMK5V +BS_1A6MQ9ZA SATB2--MAIP1/SPATS2L frameshift SATB2 NA MAIP1 SPATS2L TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JSFBMK5V +BS_1A6MQ9ZA STC2--MKL1/GAPDHP37 frameshift STC2 NA MKL1 GAPDHP37 NA Oncogene NA NA NA ARRIBA 1 PT_JSFBMK5V +BS_1AYRM596 FZD3--EBF2/RNA5SP258 frameshift FZD3 NA EBF2 RNA5SP258 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_BPKVVWVB +BS_1AYRM596 JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_BPKVVWVB +BS_1AYRM596 PVT1--AC105031.2 other PVT1 NA AC105031.2 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_BPKVVWVB +BS_1AYRM596 ZBTB10--COL22A1 frameshift ZBTB10 NA COL22A1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_BPKVVWVB +BS_1BWP5MCT EXOC4--EXOC4 other EXOC4 NA EXOC4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_23NZGSRJ +BS_1BWP5MCT HMGB1P5/AC092421.1--ZNF385D other HMGB1P5 AC092421.1 ZNF385D NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_23NZGSRJ +BS_1D6PZNKN BAZ2B--CECR3 frameshift BAZ2B NA CECR3 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7DTGJYA7 +BS_1D6PZNKN CACNA1I--MKL1 frameshift CACNA1I NA MKL1 NA NA Oncogene NA NA NA ARRIBA 1 PT_7DTGJYA7 +BS_1D6PZNKN CRKL--RPLP0P7/CDK7P1 other CRKL NA RPLP0P7 CDK7P1 Oncogene NA NA NA NA ARRIBA 1 PT_7DTGJYA7 +BS_1D6PZNKN EZR--PDE10A other EZR NA PDE10A NA CosmicCensus NA NA NA NA ARRIBA 1 PT_7DTGJYA7 +BS_1D6PZNKN FGF14--ESRRG/GPATCH2 frameshift FGF14 NA ESRRG GPATCH2 Oncogene Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_7DTGJYA7 +BS_1D6PZNKN FGFR1--TACC1 in-frame FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_7DTGJYA7 +BS_1D6PZNKN HIP1--IGF2BP2 in-frame HIP1 NA IGF2BP2 NA CosmicCensus, Oncogene CosmicCensus NA NA NA ARRIBA 1 PT_7DTGJYA7 +BS_1D6PZNKN MKL1--CACNA1I other MKL1 NA CACNA1I NA Oncogene NA NA NA NA ARRIBA 1 PT_7DTGJYA7 +BS_1D6PZNKN PDGFRA--SCFD2 other PDGFRA NA SCFD2 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_7DTGJYA7 +BS_1D6PZNKN RAB8A--PRKN frameshift RAB8A NA PRKN NA Oncogene NA NA NA NA ARRIBA 1 PT_7DTGJYA7 +BS_1D6PZNKN RANBP3--ZNF675 frameshift RANBP3 NA ZNF675 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_7DTGJYA7 +BS_1D6PZNKN RBX1--AC009961.1 frameshift RBX1 NA AC009961.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_7DTGJYA7 +BS_1D6PZNKN ROCK1--ATP6V0E1 in-frame ROCK1 NA ATP6V0E1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_7DTGJYA7 +BS_1D6PZNKN SEPT9--AP003108.2 other SEPT9 NA AP003108.2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_7DTGJYA7 +BS_1D6PZNKN TACC1--TACC1 frameshift TACC1 NA TACC1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7DTGJYA7 +BS_1D6PZNKN UTRN--AL078604.2/SOD2 frameshift UTRN NA AL078604.2 SOD2 NA NA NA TumorSuppressorGene NA ARRIBA 1 PT_7DTGJYA7 +BS_1D6PZNKN ZNF266--SEPT9 other ZNF266 NA SEPT9 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_7DTGJYA7 +BS_1D6PZNKN ZNF43--ERC1 other ZNF43 NA ERC1 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_7DTGJYA7 +BS_1D6PZNKN ZSWIM4--AHI1 in-frame ZSWIM4 NA AHI1 NA NA Oncogene NA NA NA ARRIBA 1 PT_7DTGJYA7 +BS_1EBQ3T20 ARAP2--ARAP2 in-frame ARAP2 NA ARAP2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_4347ZBEX +BS_1EBQ3T20 CABLES1--LAMA3 other CABLES1 NA LAMA3 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_4347ZBEX +BS_1EBQ3T20 FANCC--FANCC frameshift FANCC NA FANCC NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_4347ZBEX +BS_1EBQ3T20 MSH3--MSH3 frameshift MSH3 NA MSH3 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_4347ZBEX +BS_1EBQ3T20 MTA3--MTA3 frameshift MTA3 NA MTA3 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_4347ZBEX +BS_1EBQ3T20 NEK1--NEK1 frameshift NEK1 NA NEK1 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_4347ZBEX +BS_1EBQ3T20 NSMCE2--SDCCAG8 frameshift NSMCE2 NA SDCCAG8 NA NA Oncogene NA NA NA ARRIBA 1 PT_4347ZBEX +BS_1EBQ3T20 POU6F1--FLJ31104/AC008892.1 other POU6F1 NA FLJ31104 AC008892.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_4347ZBEX +BS_1EBQ3T20 TAOK3--TAOK3 frameshift TAOK3 NA TAOK3 NA Kinase Kinase NA NA NA ARRIBA 1 PT_4347ZBEX +BS_1EBQ3T20 TXNL1--TCF4 frameshift TXNL1 NA TCF4 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_4347ZBEX +BS_1EBQ3T20 XRCC4--MSH3 frameshift XRCC4 NA MSH3 NA NA Oncogene NA NA NA ARRIBA 1 PT_4347ZBEX +BS_1G3WYEN3 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_TXFYRDP4 +BS_1G3WYEN3 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_TXFYRDP4 +BS_1G3WYEN3 CSMD3--CSMD3 frameshift CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_TXFYRDP4 +BS_1G3WYEN3 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_TXFYRDP4 +BS_1G3WYEN3 FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_TXFYRDP4 +BS_1G3WYEN3 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_TXFYRDP4 +BS_1G3WYEN3 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_TXFYRDP4 +BS_1G3WYEN3 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_TXFYRDP4 +BS_1G3WYEN3 MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_TXFYRDP4 +BS_1G3WYEN3 PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_TXFYRDP4 +BS_1HQ76V6D AFDN--SMTN other AFDN NA SMTN NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_1HQ76V6D AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_1HQ76V6D CR381572.2/CR381572.1--MYO18B other CR381572.2 CR381572.1 MYO18B NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_1HQ76V6D EWSR1--PLAGL1 other EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_WE1CHTWK +BS_1HQ76V6D EWSR1--PLAGL1 in-frame EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_1HQ76V6D EWSR1--PLAGL1 frameshift EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_1HQ76V6D IGF2R--AL133456.1/AL121885.2 frameshift IGF2R NA AL133456.1 AL121885.2 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_1HQ76V6D LARGE1--ZNRF3 other LARGE1 NA ZNRF3 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_1HQ76V6D LPA--QKI frameshift LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_1HQ76V6D LPA--QKI in-frame LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_1HQ76V6D MYO18B--LINC02560 frameshift MYO18B NA LINC02560 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_1HQ76V6D NF2--AL031587.6 other NF2 NA AL031587.6 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA STARFUSION 1 PT_WE1CHTWK +BS_1HQ76V6D NF2--MAPK8IP2/ARSA other NF2 NA MAPK8IP2 ARSA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_1HQ76V6D QKI--LPA frameshift QKI NA LPA NA TumorSuppressorGene, CosmicCensus NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_1HQ76V6D RBFOX2--IGL-@ other RBFOX2 NA IGL-@ NA NA Oncogene NA NA NA STARFUSION 1 PT_WE1CHTWK +BS_1HQ76V6D RBFOX2--IGL@ other RBFOX2 NA IGL@ NA NA Oncogene NA NA NA STARFUSION 1 PT_WE1CHTWK +BS_1HQ76V6D TEF/AL008582.1--CCDC134 other TEF AL008582.1 CCDC134 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_1HQ76V6D ZBED4/ALG12--LPA other ZBED4 ALG12 LPA NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_1J2WQ08M MAML2--YAP1 in-frame MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_MKDQZ17N +BS_1J2WQ08M YAP1--MAML2 in-frame YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_MKDQZ17N +BS_1KYGSMA7 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_YGN06RPZ +BS_1KYGSMA7 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_YGN06RPZ +BS_1N7MQZGR ATP7A--ATRX other ATP7A NA ATRX NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_NK8A49X5 +BS_1N7MQZGR BMP2K--AC124016.1/IGBP1P4 frameshift BMP2K NA AC124016.1 IGBP1P4 Kinase NA NA NA NA ARRIBA 1 PT_NK8A49X5 +BS_1N7MQZGR MYO10--BASP1 other MYO10 NA BASP1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_NK8A49X5 +BS_1N7MQZGR PDE4B--DNAJC6 frameshift PDE4B NA DNAJC6 NA NA Oncogene NA NA NA ARRIBA 1 PT_NK8A49X5 +BS_1N9XZXGE EWSR1--FLI1 in-frame EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_X8S0H6TG +BS_1N9XZXGE EWSR1--FLI1 frameshift EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_X8S0H6TG +BS_1N9XZXGE OSBPL3--AL022396.1/CD83 other OSBPL3 NA AL022396.1 CD83 Oncogene NA NA NA NA ARRIBA 1 PT_X8S0H6TG +BS_1QXEC43H AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_FN4GEEFR +BS_1QXEC43H RAB8A--CKM frameshift RAB8A NA CKM NA Oncogene NA NA NA NA ARRIBA 1 PT_FN4GEEFR +BS_1QXEC43H RAB8A--CKM in-frame RAB8A NA CKM NA Oncogene NA NA NA NA ARRIBA 1 PT_FN4GEEFR +BS_1T19NFJ8 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_QEMT1845 +BS_1T19NFJ8 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_QEMT1845 +BS_1T19NFJ8 CNTN4--CNTN4 in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QEMT1845 +BS_1T19NFJ8 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_QEMT1845 +BS_1T19NFJ8 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QEMT1845 +BS_1T19NFJ8 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_QEMT1845 +BS_1T19NFJ8 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_QEMT1845 +BS_1T19NFJ8 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QEMT1845 +BS_1T19NFJ8 MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_QEMT1845 +BS_1T19NFJ8 PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QEMT1845 +BS_1TPWFSK6 CP--IGFBP7 frameshift CP NA IGFBP7 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_7JQ24F35 +BS_1TWCV047 INTS6--AL138963.3 frameshift INTS6 NA AL138963.3 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_85RSG67R +BS_1TWCV047 INTS6--TPT1 in-frame INTS6 NA TPT1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_85RSG67R +BS_1XJ73KBQ ERC2--ERC2 frameshift ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AXVH36AM +BS_1XJ73KBQ HEY1--NCOA2 in-frame HEY1 NA NCOA2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_AXVH36AM +BS_1XJ73KBQ LPP--IGSF10 other LPP NA IGSF10 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_AXVH36AM +BS_1XJ73KBQ LPP--OXR1 frameshift LPP NA OXR1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_AXVH36AM +BS_1XJ73KBQ RMRP--AL139099.5 other RMRP NA AL139099.5 NA Oncogene NA NA NA NA STARFUSION 1 PT_AXVH36AM +BS_1XJ73KBQ RMRP--RN7SL1 other RMRP NA RN7SL1 NA Oncogene NA NA NA NA STARFUSION 1 PT_AXVH36AM +BS_1XJ73KBQ UBXN7--PPM1L other UBXN7 NA PPM1L NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_AXVH36AM +BS_1ZVXF5FE KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_TS0FW57Z +BS_21ET39G7 CDK18--PHLDB1 in-frame CDK18 NA PHLDB1 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_KZ56XHJT +BS_21ET39G7 CDK18--PHLDB1 other CDK18 NA PHLDB1 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_KZ56XHJT +BS_21ET39G7 STIL--PPP2CA frameshift STIL NA PPP2CA NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA ARRIBA 1 PT_KZ56XHJT +BS_21ET39G7 TNPO3--SRPK1 in-frame TNPO3 NA SRPK1 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_KZ56XHJT +BS_21ET39G7 YPEL1--ZMYND11 frameshift YPEL1 NA ZMYND11 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_KZ56XHJT +BS_21RE8W46 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_VABP80N2 +BS_23M72ABG PKNOX2--AP003086.2 other PKNOX2 NA AP003086.2 NA TranscriptionFactor NA NA NA NA ARRIBA, STARFUSION 2 PT_AQWDQW27 +BS_23M72ABG PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_AQWDQW27 +BS_23M72ABG YAP1--FAM118B in-frame YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_AQWDQW27 +BS_23M72ABG YAP1--FAM118B frameshift YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_AQWDQW27 +BS_23M72ABG YAP1--FAM118B other YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA STARFUSION 1 PT_AQWDQW27 +BS_23QW0BBA CCND1--MYO16 frameshift CCND1 NA MYO16 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_3X3MF8ZD +BS_23QW0BBA CCND1--MYO16-AS1 frameshift CCND1 NA MYO16-AS1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_3X3MF8ZD +BS_23QW0BBA FGF4--AP003071.5 other FGF4 NA AP003071.5 NA Oncogene NA NA NA NA ARRIBA 1 PT_3X3MF8ZD +BS_23QW0BBA GAB2--CYB561A3 in-frame GAB2 NA CYB561A3 NA Oncogene NA NA NA NA ARRIBA 1 PT_3X3MF8ZD +BS_23QW0BBA GAB2--CYB561A3 frameshift GAB2 NA CYB561A3 NA Oncogene NA NA NA NA ARRIBA 1 PT_3X3MF8ZD +BS_23QW0BBA ORAOV1--AP000439.1/AP000439.4 frameshift ORAOV1 NA AP000439.1 AP000439.4 Oncogene NA NA NA NA ARRIBA 1 PT_3X3MF8ZD +BS_23QW0BBA PDSS2--FIG4 frameshift PDSS2 NA FIG4 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_3X3MF8ZD +BS_23QW0BBA SMG6--AC015908.2/RN7SL601P frameshift SMG6 NA AC015908.2 RN7SL601P Oncogene NA NA NA NA ARRIBA 1 PT_3X3MF8ZD +BS_23QW0BBA TTC19--ZBTB4 frameshift TTC19 NA ZBTB4 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_3X3MF8ZD +BS_23QW0BBA TTC19--ZBTB4 other TTC19 NA ZBTB4 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA STARFUSION 1 PT_3X3MF8ZD +BS_23QW0BBA ZFP3--ADORA2B other ZFP3 NA ADORA2B NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_3X3MF8ZD +BS_23QW0BBA ZNF510--YWHAEP7 frameshift ZNF510 NA YWHAEP7 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_3X3MF8ZD +BS_23W9EPFE ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_1ZAWNGWT +BS_258RRGDM AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DQ3ZCHB6 +BS_258RRGDM AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DQ3ZCHB6 +BS_258RRGDM ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DQ3ZCHB6 +BS_258RRGDM KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DQ3ZCHB6 +BS_258RRGDM KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DQ3ZCHB6 +BS_258RRGDM KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DQ3ZCHB6 +BS_258RRGDM MCM9--MCM9 other MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_DQ3ZCHB6 +BS_258RRGDM NPAS2--NPAS2 frameshift NPAS2 NA NPAS2 NA TumorSuppressorGene, TranscriptionFactor TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_DQ3ZCHB6 +BS_258RRGDM RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_DQ3ZCHB6 +BS_25T139TX PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_TH8M3W34 +BS_264RCK7G ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3A0B29QT +BS_273HKCT4 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_8CZ6ANE0 +BS_273HKCT4 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_8CZ6ANE0 +BS_273HKCT4 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_8CZ6ANE0 +BS_273HKCT4 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_8CZ6ANE0 +BS_273HKCT4 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_8CZ6ANE0 +BS_273HKCT4 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_8CZ6ANE0 +BS_273HKCT4 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_8CZ6ANE0 +BS_27QE6BV7 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_Z9QE51C3 +BS_27QE6BV7 EWSR1--PLAGL1 frameshift EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_Z9QE51C3 +BS_27QE6BV7 EWSR1--PLAGL1 in-frame EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_Z9QE51C3 +BS_27QE6BV7 PLAGL1--LAMA4 other PLAGL1 NA LAMA4 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z9QE51C3 +BS_29X4ZX6Q NBAS--TMEFF2/AC062039.1 other NBAS NA TMEFF2 AC062039.1 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_63HDZHCN +BS_2A162JH9 PAX3--AC068489.1/AC009302.1 frameshift PAX3 NA AC068489.1 AC009302.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JNEV57VK +BS_2A162JH9 PAX3--AC079834.1/AC068489.1 frameshift PAX3 NA AC079834.1 AC068489.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JNEV57VK +BS_2A162JH9 RSF1--AP001978.1/AP001541.1 frameshift RSF1 NA AP001978.1 AP001541.1 Oncogene NA NA NA NA ARRIBA 1 PT_JNEV57VK +BS_2A162JH9 TBCEL--SORL1 other TBCEL NA SORL1 NA NA Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_JNEV57VK +BS_2A5R9MEJ CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_FYPWZBH0 +BS_2ADZNNV4 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_NTK39NNV +BS_2ADZNNV4 PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NTK39NNV +BS_2ADZNNV4 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_NTK39NNV +BS_2AR3AP0N ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AWBPNFM5 +BS_2AR3AP0N KCTD8--NTRK2 in-frame KCTD8 NA NTRK2 NA NA Oncogene, Kinase NA NA NA ARRIBA 1 PT_AWBPNFM5 +BS_2AR3AP0N KCTD8--NTRK2 other KCTD8 NA NTRK2 NA NA Oncogene, Kinase NA NA NA ARRIBA 1 PT_AWBPNFM5 +BS_2AR3AP0N NTRK2--KCTD8 in-frame NTRK2 NA KCTD8 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_AWBPNFM5 +BS_2AR3AP0N NTRK2--KCTD8 frameshift NTRK2 NA KCTD8 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_AWBPNFM5 +BS_2EMW8ZG3 FAT1--SNX25 frameshift FAT1 NA SNX25 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_FFRHWB74 +BS_2EMW8ZG3 LRRFIP1--ARID1B frameshift LRRFIP1 NA ARID1B NA Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_FFRHWB74 +BS_2EMW8ZG3 NR2C2--LINC01107/LINC01937 frameshift NR2C2 NA LINC01107 LINC01937 TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_FFRHWB74 +BS_2EN3X6HB AC241585.2--PDE4DIP other AC241585.2 NA PDE4DIP NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CSZ9QA1N +BS_2JP7RBMB AL445673.1--PRRX1/MROH9 other AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_Y74CVASJ +BS_2JP7RBMB CTNND1--RTN4RL2 frameshift CTNND1 NA RTN4RL2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_Y74CVASJ +BS_2JP7RBMB GRB2--C17orf82/TBX4 other GRB2 NA C17orf82 TBX4 Oncogene NA NA TranscriptionFactor NA ARRIBA 1 PT_Y74CVASJ +BS_2JP7RBMB PDGFRA--SPATA18/AC097522.1 other PDGFRA NA SPATA18 AC097522.1 Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_Y74CVASJ +BS_2JP7RBMB TNRC6C--GRB2 frameshift TNRC6C NA GRB2 NA NA Oncogene NA NA NA ARRIBA 1 PT_Y74CVASJ +BS_2R9TCR03 ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_ZMKMKCFQ +BS_2SFTWNVE AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_BG7GAFK6 +BS_2SFTWNVE CCSER1--PTPN13 in-frame CCSER1 NA PTPN13 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BG7GAFK6 +BS_2SFTWNVE CHD2--CELF2 other CHD2 NA CELF2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_BG7GAFK6 +BS_2SFTWNVE FUT8/AL391261.1--FUT8 other FUT8 AL391261.1 FUT8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BG7GAFK6 +BS_2SFTWNVE JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_BG7GAFK6 +BS_2SFTWNVE RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_BG7GAFK6 +BS_2SFTWNVE ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_BG7GAFK6 +BS_2SFTWNVE WRN--WRN in-frame WRN NA WRN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BG7GAFK6 +BS_2W3NC4K1 SETD2--ROBO1 frameshift SETD2 NA ROBO1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_2E552BAR +BS_2WPQ8YCW KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_KQK98ZVP +BS_2XD3MNKD AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_YQWG98Z5 +BS_2XD3MNKD AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_YQWG98Z5 +BS_2XD3MNKD CIT--CIT in-frame CIT NA CIT NA Kinase Kinase NA NA NA ARRIBA 1 PT_YQWG98Z5 +BS_2XD3MNKD CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_YQWG98Z5 +BS_2XD3MNKD EPHA5--EPHA5 frameshift EPHA5 NA EPHA5 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_YQWG98Z5 +BS_2XD3MNKD ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_YQWG98Z5 +BS_2XD3MNKD KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_YQWG98Z5 +BS_2XD3MNKD KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_YQWG98Z5 +BS_2XD3MNKD KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_YQWG98Z5 +BS_2XD3MNKD MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_YQWG98Z5 +BS_2XD3MNKD RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_YQWG98Z5 +BS_2XD3MNKD RGS7--RGS7 frameshift RGS7 NA RGS7 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_YQWG98Z5 +BS_2XD3MNKD UNC5D--UNC5D frameshift UNC5D NA UNC5D NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_YQWG98Z5 +BS_2YCJV2VV CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_TD6ST5MG +BS_2Z1MKS84 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_1T7WF5S1 +BS_30VC3R2Q RMRP--AL139099.5 other RMRP NA AL139099.5 NA Oncogene NA NA NA NA STARFUSION 1 PT_7DTGJYA7 +BS_30VC3R2Q RMRP--RN7SL1 other RMRP NA RN7SL1 NA Oncogene NA NA NA NA STARFUSION 1 PT_7DTGJYA7 +BS_31TF0P1N BCR--AP000350.4 in-frame BCR NA AP000350.4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M04EC74B +BS_31TF0P1N BCR--GALNT12 frameshift BCR NA GALNT12 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M04EC74B +BS_31TF0P1N BCR--SLC2A11 in-frame BCR NA SLC2A11 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M04EC74B +BS_31TF0P1N CABIN1--GNAQ other CABIN1 NA GNAQ NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_M04EC74B +BS_31TF0P1N COL11A1--COL11A1 in-frame COL11A1 NA COL11A1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_M04EC74B +BS_34201DKZ CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_V0X73HEQ +BS_34201DKZ ERC2--ERC2 other ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_V0X73HEQ +BS_34201DKZ LCOR--AKAP3 other LCOR NA AKAP3 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_V0X73HEQ +BS_34201DKZ RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_V0X73HEQ +BS_37GTVG4N AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_DQT78GS5 +BS_37GTVG4N CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_DQT78GS5 +BS_37GTVG4N LINC00630--BMX other LINC00630 NA BMX NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_DQT78GS5 +BS_37GTVG4N MYT1L--MYT1L frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_DQT78GS5 +BS_37GTVG4N TTYH1--MIR512-2/MIR1323 frameshift TTYH1 NA MIR512-2 MIR1323 Oncogene NA NA NA NA ARRIBA 1 PT_DQT78GS5 +BS_37GTVG4N TTYH1--MIR515-2/MIR519C frameshift TTYH1 NA MIR515-2 MIR519C Oncogene NA NA NA NA ARRIBA 1 PT_DQT78GS5 +BS_37GTVG4N ZDHHC15--CASK frameshift ZDHHC15 NA CASK NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_DQT78GS5 +BS_37GTVG4N ZNF578--ZDHHC15 other ZNF578 NA ZDHHC15 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DQT78GS5 +BS_398KYV92 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_976P4557 +BS_398KYV92 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_976P4557 +BS_398KYV92 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_976P4557 +BS_398KYV92 DCLK2--DCLK2 frameshift DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_976P4557 +BS_398KYV92 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_976P4557 +BS_398KYV92 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_976P4557 +BS_398KYV92 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_976P4557 +BS_398KYV92 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_976P4557 +BS_398KYV92 PRDM2--PRDM2 frameshift PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_976P4557 +BS_39CGACC7 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_CBAYDRF9 +BS_39CGACC7 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_CBAYDRF9 +BS_39CGACC7 ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_CBAYDRF9 +BS_39CGACC7 CNTN4--CNTN4 in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CBAYDRF9 +BS_39CGACC7 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CBAYDRF9 +BS_39CGACC7 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CBAYDRF9 +BS_39CGACC7 JAKMIP1--JAKMIP1 in-frame JAKMIP1 NA JAKMIP1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CBAYDRF9 +BS_39CGACC7 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CBAYDRF9 +BS_39CGACC7 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CBAYDRF9 +BS_39CGACC7 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CBAYDRF9 +BS_3AC3SRWH MEF2A--APP other MEF2A NA APP NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_SDPA6AAP +BS_3AC3SRWH PELI2--KTN1 frameshift PELI2 NA KTN1 NA NA CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_SDPA6AAP +BS_3AC3SRWH SELENOI--MAP4K4 in-frame SELENOI NA MAP4K4 NA NA Kinase NA NA NA ARRIBA 1 PT_SDPA6AAP +BS_3AC3SRWH SSBP3--C12orf45 other SSBP3 NA C12orf45 NA Oncogene NA NA NA NA ARRIBA 1 PT_SDPA6AAP +BS_3BDAG9YN ATF6B--PGAM5 frameshift ATF6B NA PGAM5 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_62VNQ8C4 +BS_3BDAG9YN CDH11--VPS13A other CDH11 NA VPS13A NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_62VNQ8C4 +BS_3BDAG9YN ETV4--CETP other ETV4 NA CETP NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_62VNQ8C4 +BS_3BDAG9YN PCDH18--FER frameshift PCDH18 NA FER NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_62VNQ8C4 +BS_3BVVWHP5 RN7SL2--RMRP other RN7SL2 NA RMRP NA NA Oncogene NA NA NA STARFUSION 1 PT_JW6FBEFK +BS_3DCBDJAT ALX4--CDC42EP2 frameshift ALX4 NA CDC42EP2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_AKQZZPH8 +BS_3DCBDJAT ALX4--CDC42EP2 other ALX4 NA CDC42EP2 NA TranscriptionFactor NA NA NA NA STARFUSION 1 PT_AKQZZPH8 +BS_3DCBDJAT AMOTL1--AP002001.2/GUCY1A2 frameshift AMOTL1 NA AP002001.2 GUCY1A2 NA NA NA Oncogene NA ARRIBA 1 PT_AKQZZPH8 +BS_3DCBDJAT MAML2--YAP1 frameshift MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion ARRIBA 1 PT_AKQZZPH8 +BS_3DCBDJAT MAML2--YAP1 in-frame MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion ARRIBA 1 PT_AKQZZPH8 +BS_3DCBDJAT PICALM--TP53AIP1/ARHGAP32 frameshift PICALM NA TP53AIP1 ARHGAP32 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_AKQZZPH8 +BS_3DCBDJAT PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_AKQZZPH8 +BS_3DCBDJAT TEAD1--SERGEF other TEAD1 NA SERGEF NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_AKQZZPH8 +BS_3DCBDJAT YAP1--MAML2 in-frame YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_AKQZZPH8 +BS_3F4FQJMR ARID1B--PLAGL1 other ARID1B NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA STARFUSION 1 PT_8RB7TPS2 +BS_3F4FQJMR ARID1B--QKI frameshift ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_8RB7TPS2 +BS_3F4FQJMR FYN--C6orf106 other FYN NA C6orf106 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_8RB7TPS2 +BS_3F4FQJMR LINC01019--LINC01019/IRX1 other LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA ARRIBA 1 PT_8RB7TPS2 +BS_3F4FQJMR MAP3K5--TAAR8/TAAR7P frameshift MAP3K5 NA TAAR8 TAAR7P Kinase, Kinase NA NA NA NA ARRIBA 1 PT_8RB7TPS2 +BS_3F4FQJMR MYB--AL358972.1/AL450345.1 other MYB NA AL358972.1 AL450345.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_8RB7TPS2 +BS_3F4FQJMR QKI--ARID1B other QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_8RB7TPS2 +BS_3F4FQJMR TAAR9/TAAR8--MAP3K5 other TAAR9 TAAR8 MAP3K5 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_8RB7TPS2 +BS_3F5PR9GS AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_HM2GMT2H +BS_3G3KWY18 RMRP--7SK other RMRP NA 7SK NA Oncogene NA NA NA NA STARFUSION 1 PT_48N4Y6YP +BS_3G3KWY18 UNC79--UNC79 frameshift UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_48N4Y6YP +BS_3H71BH6Q ROBO2--ROBO2 frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_AWMZ12NP +BS_3J85TTZM BCL9--PI4KB other BCL9 NA PI4KB NA CosmicCensus, Oncogene Kinase NA NA NA ARRIBA 1 PT_5ZHYHDY2 +BS_3J85TTZM CHIC2--AC021220.1/RNU6-746P frameshift CHIC2 NA AC021220.1 RNU6-746P CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_5ZHYHDY2 +BS_3J85TTZM EHF/AC087783.2--HIPK3 other EHF AC087783.2 HIPK3 NA TumorSuppressorGene, TranscriptionFactor Kinase, Kinase NA NA NA ARRIBA 1 PT_5ZHYHDY2 +BS_3J85TTZM GTF2B--KIF18B in-frame GTF2B NA KIF18B NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_5ZHYHDY2 +BS_3J85TTZM HIPK3--EHF/AC087783.2 frameshift HIPK3 NA EHF AC087783.2 Kinase, Kinase TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_5ZHYHDY2 +BS_3J85TTZM PLCL1--AC016903.2/PARD3B frameshift PLCL1 NA AC016903.2 PARD3B Oncogene NA NA NA NA ARRIBA 1 PT_5ZHYHDY2 +BS_3KASVCSQ ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_T2V4X5ZW +BS_3MS8WVNR AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_AP658JQV +BS_3MS8WVNR CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_AP658JQV +BS_3MS8WVNR ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AP658JQV +BS_3MS8WVNR FPGT-TNNI3K--FPGT-TNNI3K frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_AP658JQV +BS_3MS8WVNR JAKMIP1--JAKMIP1 in-frame JAKMIP1 NA JAKMIP1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AP658JQV +BS_3MS8WVNR KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_AP658JQV +BS_3MS8WVNR KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_AP658JQV +BS_3MS8WVNR KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AP658JQV +BS_3MS8WVNR ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_AP658JQV +BS_3MS8WVNR ZNF592--LINC00924/AC015574.1 frameshift ZNF592 NA LINC00924 AC015574.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_AP658JQV +BS_3MYEMXPQ AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_RQ21EBK9 +BS_3MYEMXPQ JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RQ21EBK9 +BS_3MYEMXPQ ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RQ21EBK9 +BS_3NNQ6PSB JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_GNKRMTQY +BS_3NWQXPQV AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_0DWRY9ZX +BS_3NWQXPQV RBBP5--C1orf186 frameshift RBBP5 NA C1orf186 NA Oncogene NA NA NA NA ARRIBA 1 PT_0DWRY9ZX +BS_3NWQXPQV ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_0DWRY9ZX +BS_3P20Q2C3 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_HYXSSCJ5 +BS_3P20Q2C3 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_HYXSSCJ5 +BS_3P20Q2C3 ARHGEF10--ARHGEF10 in-frame ARHGEF10 NA ARHGEF10 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_HYXSSCJ5 +BS_3P20Q2C3 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_HYXSSCJ5 +BS_3P20Q2C3 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_HYXSSCJ5 +BS_3P20Q2C3 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_HYXSSCJ5 +BS_3P20Q2C3 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_HYXSSCJ5 +BS_3P20Q2C3 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_HYXSSCJ5 +BS_3PYESPHA ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_A594A46X +BS_3Q0GTSYH KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_KXB1PJV0 +BS_3T6X4BPC BRINP1--BRINP1 frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_BBHAD51D +BS_3T6X4BPC ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BBHAD51D +BS_3T6X4BPC FGFR1--TACC1 in-frame FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_BBHAD51D +BS_3TQSE8HF LINC01949/RASA1--AC109492.1 other LINC01949 RASA1 AC109492.1 NA NA NA Oncogene NA NA ARRIBA 1 PT_BYJ428GA +BS_3W07B2TG AHNAK--AC116535.2 frameshift AHNAK NA AC116535.2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_HMY997GX +BS_3W07B2TG BRINP1--BRINP1 frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_HMY997GX +BS_3W07B2TG CDH20--CDH20 frameshift CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_HMY997GX +BS_3W07B2TG IGFBP7--STK32B frameshift IGFBP7 NA STK32B NA TumorSuppressorGene, Oncogene Kinase NA NA NA ARRIBA 1 PT_HMY997GX +BS_3W07B2TG MARK2--STK33 in-frame MARK2 NA STK33 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_HMY997GX +BS_3W07B2TG ST13--ROS1 in-frame ST13 NA ROS1 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_HMY997GX +BS_3X9WMZGJ MCM9--MCM9 frameshift MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_3VCS1PPF +BS_3XY76V8T CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_GDDWPDMC +BS_3XY76V8T ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GDDWPDMC +BS_3XY76V8T MAP4--KIF1A frameshift MAP4 NA KIF1A NA Oncogene NA NA NA NA ARRIBA 1 PT_GDDWPDMC +BS_3XY76V8T RMRP--AL139099.5 other RMRP NA AL139099.5 NA Oncogene NA NA NA NA STARFUSION 1 PT_GDDWPDMC +BS_3XY76V8T RMRP--RN7SL1 other RMRP NA RN7SL1 NA Oncogene NA NA NA NA STARFUSION 1 PT_GDDWPDMC +BS_3Y0QXZQB AF127577.4--NRIP1 other AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA ARRIBA 1 PT_K8ZV7APT +BS_3Y0QXZQB MTAP--AC092506.1/CDK4P1 frameshift MTAP NA AC092506.1 CDK4P1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_K8ZV7APT +BS_401R3KV0 ELMO1--RBFOX1 other ELMO1 NA RBFOX1 NA Oncogene NA NA NA NA ARRIBA 1 PT_MBAXTJET +BS_401R3KV0 RAF1--DLGAP4 frameshift RAF1 NA DLGAP4 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_MBAXTJET +BS_401R3KV0 SMG1--C16orf96 frameshift SMG1 NA C16orf96 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_MBAXTJET +BS_40MP5BWR ACACB--NF1 in-frame ACACB NA NF1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JSFBMK5V +BS_40MP5BWR CNTNAP2--RUNX1 other CNTNAP2 NA RUNX1 NA TumorSuppressorGene, CosmicCensus TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_JSFBMK5V +BS_40MP5BWR RUNX1--CNTNAP2 frameshift RUNX1 NA CNTNAP2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_JSFBMK5V +BS_40MP5BWR SSPO--DDR1 in-frame SSPO NA DDR1 NA NA Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_JSFBMK5V +BS_40MP5BWR UBE2E2--SOX5 frameshift UBE2E2 NA SOX5 NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_JSFBMK5V +BS_40MP5BWR UBE2E2--SOX5/MIR920 frameshift UBE2E2 NA SOX5 MIR920 NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_JSFBMK5V +BS_42DY6WS7 AL445673.1--PRRX1/MROH9 other AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_12JTZFC2 +BS_42DY6WS7 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_12JTZFC2 +BS_42DY6WS7 RFX4--RFX4 in-frame RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_12JTZFC2 +BS_42DY6WS7 RMRP--AL139099.5 other RMRP NA AL139099.5 NA Oncogene NA NA NA NA STARFUSION 1 PT_12JTZFC2 +BS_42DY6WS7 RMRP--RN7SL1 other RMRP NA RN7SL1 NA Oncogene NA NA NA NA STARFUSION 1 PT_12JTZFC2 +BS_42DY6WS7 ROBO1--FA2H/AC009132.1 frameshift ROBO1 NA FA2H AC009132.1 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_12JTZFC2 +BS_42Y3YANN KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_BDNE55YT +BS_42Y3YANN KIAA1549--BRAF frameshift KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_BDNE55YT +BS_45J79YTF ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_6GDPNFA6 +BS_45J79YTF MET--PTPRZ1 in-frame MET NA PTPRZ1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_6GDPNFA6 +BS_470DYRJQ AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_0EWY6S6S +BS_470DYRJQ CYB5R4--CYB5R4 frameshift CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0EWY6S6S +BS_470DYRJQ ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0EWY6S6S +BS_470DYRJQ KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_0EWY6S6S +BS_470DYRJQ MTSS1--MTSS1 frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_0EWY6S6S +BS_470DYRJQ ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_0EWY6S6S +BS_478TN841 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_W6AWJJK7 +BS_478TN841 FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_W6AWJJK7 +BS_478TN841 PWWP2AP1--SPRY2/RNU6-61P other PWWP2AP1 NA SPRY2 RNU6-61P NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_W6AWJJK7 +BS_479S95Q6 FAM126A--CDK6 frameshift FAM126A NA CDK6 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_8V3360DR +BS_479S95Q6 XXYLT1--SEC22A frameshift XXYLT1 NA SEC22A NA Oncogene NA NA NA NA ARRIBA 1 PT_8V3360DR +BS_49852ZBH KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_5VAKED5F +BS_49852ZBH MYT1L--MYT1L frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_5VAKED5F +BS_49BQS7Z6 ACO2--MKL1 frameshift ACO2 NA MKL1 NA NA Oncogene NA NA NA ARRIBA 1 PT_HNZNZ635 +BS_49BQS7Z6 ACO2--MKL1 other ACO2 NA MKL1 NA NA Oncogene NA NA NA ARRIBA 1 PT_HNZNZ635 +BS_49BQS7Z6 BCL2L13--IGL-@ other BCL2L13 NA IGL-@ NA NA Oncogene NA NA NA STARFUSION 1 PT_HNZNZ635 +BS_49BQS7Z6 BCL2L13--IGL@ other BCL2L13 NA IGL@ NA NA Oncogene NA NA NA STARFUSION 1 PT_HNZNZ635 +BS_49BQS7Z6 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_HNZNZ635 +BS_49BQS7Z6 GRK3--THOC5 frameshift GRK3 NA THOC5 NA Kinase Oncogene NA NA NA ARRIBA 1 PT_HNZNZ635 +BS_49BQS7Z6 LMNTD1--LMNTD1 frameshift LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_HNZNZ635 +BS_49BQS7Z6 MKL1--ACO2 frameshift MKL1 NA ACO2 NA Oncogene NA NA NA NA ARRIBA 1 PT_HNZNZ635 +BS_49BQS7Z6 MKL1--ACO2 other MKL1 NA ACO2 NA Oncogene NA NA NA NA ARRIBA 1 PT_HNZNZ635 +BS_49BQS7Z6 MN1--PATZ1 other MN1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_HNZNZ635 +BS_49BQS7Z6 MYH9--MLC1 other MYH9 NA MLC1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_HNZNZ635 +BS_49BQS7Z6 NPAS2--NPAS2 frameshift NPAS2 NA NPAS2 NA TumorSuppressorGene, TranscriptionFactor TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_HNZNZ635 +BS_49BQS7Z6 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_HNZNZ635 +BS_49CJNZ06 CTNNA3--TYSND1 other CTNNA3 NA TYSND1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_M9XXJ4GR +BS_49CJNZ06 GAP43/LSAMP--LSAMP-AS1 other GAP43 LSAMP LSAMP-AS1 NA NA NA TumorSuppressorGene NA NA ARRIBA 1 PT_M9XXJ4GR +BS_49CJNZ06 ITPR1--LINC01985/TGFBR2 other ITPR1 NA LINC01985 TGFBR2 NA NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA ARRIBA 1 PT_M9XXJ4GR +BS_49CJNZ06 ITPR1--TGFBR2 other ITPR1 NA TGFBR2 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_M9XXJ4GR +BS_49CJNZ06 MSI2--AC015813.1 in-frame MSI2 NA AC015813.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M9XXJ4GR +BS_49CJNZ06 MSI2--AC015813.2 in-frame MSI2 NA AC015813.2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M9XXJ4GR +BS_49CJNZ06 QKI--PRKN frameshift QKI NA PRKN NA TumorSuppressorGene, CosmicCensus NA NA NA NA ARRIBA 1 PT_M9XXJ4GR +BS_49F4RAA4 BRAF--TRG-AS1 frameshift BRAF NA TRG-AS1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_J06X17XH +BS_49F4RAA4 MBNL1--BRAF in-frame MBNL1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_J06X17XH +BS_49F4RAA4 MBNL1--BRAF frameshift MBNL1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_J06X17XH +BS_49FQXT2E AC084337.2--LMO2/CAPRIN1 frameshift AC084337.2 NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E BRSK2--AL078612.2 frameshift BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E BRSK2--AL078612.2 other BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA STARFUSION 1 PT_89XRZBSG +BS_49FQXT2E BRSK2--THEM7P frameshift BRSK2 NA THEM7P NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E CD44--AC110058.1 frameshift CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E CD44--AC110058.1 other CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA STARFUSION 1 PT_89XRZBSG +BS_49FQXT2E CD44--AC124657.1/AL358944.1 frameshift CD44 NA AC124657.1 AL358944.1 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E CD44--WIZP1/MIR8054 frameshift CD44 NA WIZP1 MIR8054 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E CDKN2A--AL353753.1 frameshift CDKN2A NA AL353753.1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E CDKN2A--FAM71BP1/AL353753.1 frameshift CDKN2A NA FAM71BP1 AL353753.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E FGF6--WWC3 frameshift FGF6 NA WWC3 NA Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E HIPK3--AL078612.1 frameshift HIPK3 NA AL078612.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E IPO7--HIPK3 frameshift IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E IPO7--HIPK3 other IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA STARFUSION 1 PT_89XRZBSG +BS_49FQXT2E LMO2--LINC02546 other LMO2 NA LINC02546 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E LMO2--LINC02546/HNRNPRP2 other LMO2 NA LINC02546 HNRNPRP2 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E NLGN4X--MID1 other NLGN4X NA MID1 NA NA Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E PPFIBP1--AC006206.2 frameshift PPFIBP1 NA AC006206.2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E RCN1--HIPK3 frameshift RCN1 NA HIPK3 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E SCLT1--ADGRL3 frameshift SCLT1 NA ADGRL3 NA Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E SLC1A2--SWAP70 frameshift SLC1A2 NA SWAP70 NA NA Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E ST5--PAMR1 other ST5 NA PAMR1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E TIMM10B--LMO2/CAPRIN1 frameshift TIMM10B NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E WWC3--FGF6 frameshift WWC3 NA FGF6 NA NA Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E WWC3--FGF6/C12orf4 frameshift WWC3 NA FGF6 C12orf4 NA Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG +BS_49FQXT2E YY1AP1--AL121899.1/TGM3 frameshift YY1AP1 NA AL121899.1 TGM3 NA NA NA TumorSuppressorGene NA ARRIBA 1 PT_89XRZBSG +BS_4A45GGSW KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_QJDY4Y9P +BS_4B0BAVTX ARNT2--AC068492.1/CXCR4 frameshift ARNT2 NA AC068492.1 CXCR4 TranscriptionFactor NA NA CosmicCensus NA ARRIBA 1 PT_7FZ8SE69 +BS_4B0BAVTX ATRX--AL157778.1/AL137843.1 frameshift ATRX NA AL157778.1 AL137843.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_7FZ8SE69 +BS_4B0BAVTX CRK--NPC1 frameshift CRK NA NPC1 NA Oncogene NA NA NA NA ARRIBA 1 PT_7FZ8SE69 +BS_4B0BAVTX CUL2--NEBL frameshift CUL2 NA NEBL NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_7FZ8SE69 +BS_4B0BAVTX DACH2--DACH2 frameshift DACH2 NA DACH2 NA Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_7FZ8SE69 +BS_4B0BAVTX DHRS7B--CAMKK1 frameshift DHRS7B NA CAMKK1 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_7FZ8SE69 +BS_4B0BAVTX ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7FZ8SE69 +BS_4B0BAVTX HSP90AA1--NDUFB2 frameshift HSP90AA1 NA NDUFB2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_7FZ8SE69 +BS_4B0BAVTX IGF1R--HNRNPM in-frame IGF1R NA HNRNPM NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_7FZ8SE69 +BS_4B0BAVTX IGF1R--HNRNPM frameshift IGF1R NA HNRNPM NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_7FZ8SE69 +BS_4B0BAVTX TICRR--ERG frameshift TICRR NA ERG NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_7FZ8SE69 +BS_4B0BAVTX TRIM24--BRAF in-frame TRIM24 NA BRAF NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_7FZ8SE69 +BS_4B0BAVTX VPS4B--ATP8B1/RSL24D1P11 frameshift VPS4B NA ATP8B1 RSL24D1P11 NA Oncogene NA NA NA ARRIBA 1 PT_7FZ8SE69 +BS_4B0BAVTX WNK1--EMILIN2 frameshift WNK1 NA EMILIN2 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_7FZ8SE69 +BS_4B0BAVTX ZNF317--LINC01823/AC062020.1 other ZNF317 NA LINC01823 AC062020.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7FZ8SE69 +BS_4BWB0FA0 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_EXYXBDGP +BS_4C4MZ4NT KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_A9F8Y6MA +BS_4CP4T22V JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_9HMVHQEH +BS_4D9DD103 ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_9A6RPJ97 +BS_4E1G7E3G RMRP--CROCC other RMRP NA CROCC NA Oncogene NA NA NA NA ARRIBA 1 PT_RJ1TJ2KH +BS_4GTESTSE DNAH7--DNAH7/STK17B frameshift DNAH7 NA DNAH7 STK17B NA NA NA Kinase NA ARRIBA 1 PT_1ZAWNGWT +BS_4GTESTSE ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_1ZAWNGWT +BS_4GTESTSE KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_1ZAWNGWT +BS_4HQ3T2NC KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_6N1QWCXE +BS_4NF35AF6 GOPC--ROS1 in-frame GOPC NA ROS1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_FAPEH6R1 +BS_4NF35AF6 VKORC1L1--ZNF92/AC114501.3 frameshift VKORC1L1 NA ZNF92 AC114501.3 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_FAPEH6R1 +BS_4NWHYH53 AF127577.4--NRIP1 other AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA ARRIBA 1 PT_Y4FN0XN1 +BS_4NWHYH53 C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_Y4FN0XN1 +BS_4NWHYH53 RELA--C11orf95 in-frame RELA NA C11orf95 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Y4FN0XN1 +BS_4NWHYH53 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_Y4FN0XN1 +BS_4PH1MBGR AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_NDVJE438 +BS_4PH1MBGR JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_NDVJE438 +BS_4PH1MBGR ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_NDVJE438 +BS_4PPHAQXF ABHD2--SGMS1 in-frame ABHD2 NA SGMS1 NA Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_P5HHJJPH +BS_4PPHAQXF CDK14--PTPRZ1 frameshift CDK14 NA PTPRZ1 NA Kinase NA NA NA NA ARRIBA 1 PT_P5HHJJPH +BS_4PPHAQXF SLC12A7--TERT frameshift SLC12A7 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA TCGAFusion ARRIBA 1 PT_P5HHJJPH +BS_4PWDGEB0 CLU--INS-IGF2 other CLU NA INS-IGF2 NA TumorSuppressorGene, Oncogene NA NA NA NA STARFUSION 1 PT_FF0NV7ZM +BS_4PWDGEB0 EWSR1--PATZ1 other EWSR1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA STARFUSION, ARRIBA 2 PT_FF0NV7ZM +BS_4PWDGEB0 EWSR1--PATZ1 in-frame EWSR1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA STARFUSION 1 PT_FF0NV7ZM +BS_4PWDGEB0 TMEM260--VRK1 in-frame TMEM260 NA VRK1 NA NA Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_FF0NV7ZM +BS_4QW2S1Q8 AC017037.3/AC017037.4--PRDM5 other AC017037.3 AC017037.4 PRDM5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 CDK6--AC004893.2 frameshift CDK6 NA AC004893.2 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 CDK6--SEM1 frameshift CDK6 NA SEM1 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 CTBP2--CCAR1 other CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 FAM155A--SPRY2 frameshift FAM155A NA SPRY2 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 FOXP2--ST7/AC006326.1 frameshift FOXP2 NA ST7 AC006326.1 TranscriptionFactor TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 GRID1--CCAR1 frameshift GRID1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 GRID1--CCAR1 in-frame GRID1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 LNX1--KIT frameshift LNX1 NA KIT NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 MET--CAMK2B in-frame MET NA CAMK2B NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 MET--GCK in-frame MET NA GCK NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 MOB2/DUSP8--NUP98 other MOB2 DUSP8 NUP98 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 NFKB1--CELF1 other NFKB1 NA CELF1 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 NUP98--PRMT3/HMGB1P40 frameshift NUP98 NA PRMT3 HMGB1P40 TumorSuppressorGene, CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 ST7--CAV2 frameshift ST7 NA CAV2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 ST7--TNPO3 frameshift ST7 NA TNPO3 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4QW2S1Q8 TRRAP--RABGEF1 frameshift TRRAP NA RABGEF1 NA Kinase, CosmicCensus, Kinase NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_4T0HPZDC PAPPA2--PAPPA2 frameshift PAPPA2 NA PAPPA2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_06H29FCG +BS_4T0HPZDC RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_06H29FCG +BS_4W1DBAN4 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_5D3AVPCW +BS_4W1DBAN4 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_5D3AVPCW +BS_4W1DBAN4 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_5D3AVPCW +BS_4W1DBAN4 PRDM2--PRDM2 frameshift PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_5D3AVPCW +BS_4W68NV3M JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_D215EQAP +BS_4Y6BCYK5 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_N9SG16EC +BS_51RA1PGE ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_HMF8J4EG +BS_51RA1PGE CNDP2--AC105243.1/AC079070.1 other CNDP2 NA AC105243.1 AC079070.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_HMF8J4EG +BS_51RA1PGE ROBO1--LINC02008 frameshift ROBO1 NA LINC02008 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_HMF8J4EG +BS_51RA1PGE UBE2D2--CDC23 in-frame UBE2D2 NA CDC23 NA Oncogene NA NA NA NA ARRIBA 1 PT_HMF8J4EG +BS_51RA1PGE UBE2D2--CDC23 frameshift UBE2D2 NA CDC23 NA Oncogene NA NA NA NA ARRIBA 1 PT_HMF8J4EG +BS_51RA1PGE UBE2D2--DPYSL3/JAKMIP2-AS1 frameshift UBE2D2 NA DPYSL3 JAKMIP2-AS1 Oncogene NA NA NA NA ARRIBA 1 PT_HMF8J4EG +BS_52426AMF ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3HRS5CWF +BS_52426AMF KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_3HRS5CWF +BS_52426AMF USH2A--USH2A/ESRRG frameshift USH2A NA USH2A ESRRG NA NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_3HRS5CWF +BS_52C576HH ZCCHC8--ROS1 in-frame ZCCHC8 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_KFYJBQB8 +BS_52DAPP1Y FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_WYF217NZ +BS_52DAPP1Y KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_WYF217NZ +BS_53GQKVEX KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_GQZ84ACS +BS_53M8PP88 RFX4--RFX4 in-frame RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_NPETR8RY +BS_55P8HPYD AL161935.3--ZEB1 other AL161935.3 NA ZEB1 NA NA CosmicCensus, TranscriptionFactor NA NA NA ARRIBA 1 PT_Q25V9Y6M +BS_55P8HPYD KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_Q25V9Y6M +BS_55P8HPYD PFKFB3--ZMIZ1 in-frame PFKFB3 NA ZMIZ1 NA NA Oncogene NA NA NA ARRIBA 1 PT_Q25V9Y6M +BS_58YXHGAJ AL445250.1--L3MBTL3 other AL445250.1 NA L3MBTL3 NA NA TranscriptionFactor NA NA NA STARFUSION, ARRIBA 2 PT_G4N67N0D +BS_58YXHGAJ ARID1B--AL390955.2/AL390955.1 frameshift ARID1B NA AL390955.2 AL390955.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ DST--AL357080.1/AL355596.1 frameshift DST NA AL357080.1 AL355596.1 Oncogene NA NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ EZR--MDN1 frameshift EZR NA MDN1 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ FOXO3--AL589740.1 other FOXO3 NA AL589740.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA STARFUSION 1 PT_G4N67N0D +BS_58YXHGAJ FOXO3--AL589740.1 frameshift FOXO3 NA AL589740.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ HIVEP2--CNR1 other HIVEP2 NA CNR1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ JARID2--CAGE1 in-frame JARID2 NA CAGE1 NA NA Oncogene NA NA NA STARFUSION 1 PT_G4N67N0D +BS_58YXHGAJ JARID2--CAGE1 frameshift JARID2 NA CAGE1 NA NA Oncogene NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ KLHL32--SLC22A23 other KLHL32 NA SLC22A23 NA NA Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_G4N67N0D +BS_58YXHGAJ LIN28B--RARS2 other LIN28B NA RARS2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ LRRC1--ID4/AL008627.1 other LRRC1 NA ID4 AL008627.1 NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ MYO6--SRSF3/MIR3925 frameshift MYO6 NA SRSF3 MIR3925 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ PHACTR1--SMAP1 other PHACTR1 NA SMAP1 NA NA Oncogene NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ RNU1-11P--SMAP1 other RNU1-11P NA SMAP1 NA NA Oncogene NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ RPS6KA2--SNORD65/AL365503.1 frameshift RPS6KA2 NA SNORD65 AL365503.1 TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ SENP6--RNU2-45P/ZSCAN23 frameshift SENP6 NA RNU2-45P ZSCAN23 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ SENP6--ZSCAN23 frameshift SENP6 NA ZSCAN23 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ SMAP1--AL008729.1 other SMAP1 NA AL008729.1 NA Oncogene NA NA NA NA STARFUSION 1 PT_G4N67N0D +BS_58YXHGAJ SMAP1--AL008729.1 frameshift SMAP1 NA AL008729.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ SMAP1--TBC1D7 other SMAP1 NA TBC1D7 NA Oncogene NA NA NA NA STARFUSION 1 PT_G4N67N0D +BS_58YXHGAJ SMAP1--TBC1D7 frameshift SMAP1 NA TBC1D7 NA Oncogene NA NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ TBPL1--AL353596.1 frameshift TBPL1 NA AL353596.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ TBPL1--HBS1L frameshift TBPL1 NA HBS1L NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ TBPL1--HBS1L in-frame TBPL1 NA HBS1L NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ TTBK1--AL008628.1/PSMB1 frameshift TTBK1 NA AL008628.1 PSMB1 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ TTBK1--HDAC2-AS2 other TTBK1 NA HDAC2-AS2 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_G4N67N0D +BS_58YXHGAJ TTBK1--HS3ST5 other TTBK1 NA HS3ST5 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_G4N67N0D +BS_593HEWBF AHCYL2--ZNF746 in-frame AHCYL2 NA ZNF746 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_DB800CE1 +BS_593HEWBF BRAF--AC002456.2 frameshift BRAF NA AC002456.2 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_DB800CE1 +BS_593HEWBF BRAF--AC006153.1 frameshift BRAF NA AC006153.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_DB800CE1 +BS_593HEWBF BRAF--CDK14 frameshift BRAF NA CDK14 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase NA NA NA ARRIBA 1 PT_DB800CE1 +BS_593HEWBF BRAF--CLDN12 frameshift BRAF NA CLDN12 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_DB800CE1 +BS_593HEWBF DGKI--LRRC4 frameshift DGKI NA LRRC4 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_DB800CE1 +BS_593HEWBF NOD1--AC009500.1/AC004852.2 frameshift NOD1 NA AC009500.1 AC004852.2 Oncogene NA NA NA NA ARRIBA 1 PT_DB800CE1 +BS_593HEWBF PTN--C7orf55-LUC7L2 other PTN NA C7orf55-LUC7L2 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_DB800CE1 +BS_593HEWBF PTN--LUC7L2 other PTN NA LUC7L2 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_DB800CE1 +BS_593HEWBF SERPINA1--AL049839.2 other SERPINA1 NA AL049839.2 NA Oncogene NA NA NA NA STARFUSION 1 PT_DB800CE1 +BS_593HEWBF SND1--DGKI/CREB3L2 frameshift SND1 NA DGKI CREB3L2 CosmicCensus NA NA CosmicCensus, Oncogene, TranscriptionFactor NA ARRIBA 1 PT_DB800CE1 +BS_59ZJWJTF LOXL2--CTNNA1 frameshift LOXL2 NA CTNNA1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3AWKWXEV +BS_5CTVXVRX GAS2--RB1CC1 frameshift GAS2 NA RB1CC1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_5CTVXVRX GAS2--RB1CC1/NPBWR1 other GAS2 NA RB1CC1 NPBWR1 NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_5CTVXVRX PRKAA1--NUSAP1 frameshift PRKAA1 NA NUSAP1 NA TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_5CTVXVRX PRKAA1--OIP5 frameshift PRKAA1 NA OIP5 NA TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_5CTVXVRX TCF4--TCP10 in-frame TCF4 NA TCP10 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_5CTVXVRX TCF4--TCP10 other TCF4 NA TCP10 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_5CTVXVRX ZNF552--AC007228.1 frameshift ZNF552 NA AC007228.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_5CTVXVRX ZNF586--AC104458.1/TPI1P1 other ZNF586 NA AC104458.1 TPI1P1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_5K3R0F5D AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_A0F23R7E +BS_5K3R0F5D AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_A0F23R7E +BS_5K3R0F5D ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_A0F23R7E +BS_5K3R0F5D KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_A0F23R7E +BS_5K3R0F5D KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_A0F23R7E +BS_5K3R0F5D KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_A0F23R7E +BS_5NWDARXG CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_EEKE0V9T +BS_5NWDARXG PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_EEKE0V9T +BS_5NWDARXG RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_EEKE0V9T +BS_5P1TN10Z ZC3H7B--MTMR3 other ZC3H7B NA MTMR3 NA NA Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_9BZETM0M +BS_5P3CZQV8 CLCC1--EBF4 other CLCC1 NA EBF4 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_MXASQ2GW +BS_5P3CZQV8 NF1--MYO1D frameshift NF1 NA MYO1D NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_MXASQ2GW +BS_5PEFNDCY AL445673.1--PRRX1/MROH9 other AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_VQDNSYXM +BS_5PEFNDCY ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_VQDNSYXM +BS_5PEFNDCY KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_VQDNSYXM +BS_5PEFNDCY MKRN7P--AL031686.1/ZNF334 other MKRN7P NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_VQDNSYXM +BS_5PEFNDCY MTSS1--MTSS1 frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_VQDNSYXM +BS_5PEFNDCY PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_VQDNSYXM +BS_5PEFNDCY PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_VQDNSYXM +BS_5PEFNDCY RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VQDNSYXM +BS_5PEFNDCY ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VQDNSYXM +BS_5PEFNDCY WRN--WRN frameshift WRN NA WRN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_VQDNSYXM +BS_5PJCHF6V AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Q90R6M3E +BS_5PJCHF6V ARHGAP42--SORL1/RNU6-256P frameshift ARHGAP42 NA SORL1 RNU6-256P NA Oncogene NA NA NA ARRIBA 1 PT_Q90R6M3E +BS_5PJCHF6V CYB5R4--CYB5R4 frameshift CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_Q90R6M3E +BS_5PJCHF6V JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_Q90R6M3E +BS_5PJCHF6V MRE11--AP001804.1 frameshift MRE11 NA AP001804.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_Q90R6M3E +BS_5PJCHF6V ROBO3--SORL1/RNU6-256P frameshift ROBO3 NA SORL1 RNU6-256P NA Oncogene NA NA NA ARRIBA 1 PT_Q90R6M3E +BS_5PJCHF6V ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_Q90R6M3E +BS_5PV5N4HQ AL359634.1/MCM9--MCM9 other AL359634.1 MCM9 MCM9 NA NA TumorSuppressorGene TumorSuppressorGene NA NA ARRIBA 1 PT_YRMG61G8 +BS_5PV5N4HQ KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_YRMG61G8 +BS_5VPM0F36 AL449403.2--ALDH2 other AL449403.2 NA ALDH2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_HGM20MW7 +BS_5VPM0F36 DBX2--DCTN2 frameshift DBX2 NA DCTN2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_HGM20MW7 +BS_5VPM0F36 USP15--ACVRL1 frameshift USP15 NA ACVRL1 NA Oncogene Kinase NA NA NA ARRIBA 1 PT_HGM20MW7 +BS_5VPM0F36 USP15--ANKRD33/AC025259.2 other USP15 NA ANKRD33 AC025259.2 Oncogene NA NA NA NA ARRIBA 1 PT_HGM20MW7 +BS_5VQP0E6K PAPSS1--DKK2 frameshift PAPSS1 NA DKK2 NA Kinase NA NA NA NA ARRIBA 1 PT_H6E09982 +BS_5YJEPPTP CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_RFF7MKTC +BS_5YJEPPTP EPHA5--EPHA5 in-frame EPHA5 NA EPHA5 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_RFF7MKTC +BS_5YJEPPTP KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_RFF7MKTC +BS_60K3EQ9S AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_2D1KGV99 +BS_60K3EQ9S CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2D1KGV99 +BS_60K3EQ9S ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2D1KGV99 +BS_60K3EQ9S KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_2D1KGV99 +BS_60K3EQ9S KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2D1KGV99 +BS_61E80SD6 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_39HBKSGG +BS_61E80SD6 AP3D1--KLF2/AC020917.3 frameshift AP3D1 NA KLF2 AC020917.3 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_39HBKSGG +BS_61E80SD6 JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_39HBKSGG +BS_61E80SD6 KCNN1--ZNF729/AC011494.1 frameshift KCNN1 NA ZNF729 AC011494.1 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_39HBKSGG +BS_61E80SD6 PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_39HBKSGG +BS_61E80SD6 RNF10--SIRT4 frameshift RNF10 NA SIRT4 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_39HBKSGG +BS_61E80SD6 RNF10--SIRT4 in-frame RNF10 NA SIRT4 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_39HBKSGG +BS_61E80SD6 TERT/MIR4457--AL132656.4 other TERT MIR4457 AL132656.4 NA CosmicCensus, Oncogene, Oncogene NA NA NA NA ARRIBA 1 PT_39HBKSGG +BS_66ABA973 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_0K0DPVF6 +BS_66HQ3E4Z KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_AC5SD9AC +BS_67Z63A2K AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_NYBH025T +BS_67Z63A2K AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_NYBH025T +BS_67Z63A2K KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_NYBH025T +BS_67Z63A2K KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_NYBH025T +BS_67Z63A2K KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NYBH025T +BS_680K119G AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_44HPG5YT +BS_680K119G AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_44HPG5YT +BS_680K119G CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_44HPG5YT +BS_680K119G ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_44HPG5YT +BS_680K119G KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_44HPG5YT +BS_680K119G KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_44HPG5YT +BS_680K119G KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_44HPG5YT +BS_685DACMS CHFR--CHFR frameshift CHFR NA CHFR NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_7PXN3B4J +BS_685DACMS GRK4--TMEM50B frameshift GRK4 NA TMEM50B NA Kinase NA NA NA NA ARRIBA 1 PT_7PXN3B4J +BS_68KX6A42 ABCB1--LINC01392/AC073901.1 frameshift ABCB1 NA LINC01392 AC073901.1 Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 AC091078.1--CHD2 other AC091078.1 NA CHD2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 AC091078.1--MIR9-3HG/RHCG other AC091078.1 NA MIR9-3HG RHCG NA NA NA Oncogene NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 ADCK2--LINC01003/AC104843.2 frameshift ADCK2 NA LINC01003 AC104843.2 Kinase NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 AHCYL2--DGKB frameshift AHCYL2 NA DGKB NA NA Kinase NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 AMPH--CFTR frameshift AMPH NA CFTR NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 AUTS2--ZNF786 other AUTS2 NA ZNF786 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 BRAF--FOXK1 frameshift BRAF NA FOXK1 NA Kinase, CosmicCensus, Oncogene, Kinase TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 CALCR--ANKRD33B other CALCR NA ANKRD33B NA Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 CAPZA2--ABCB1 frameshift CAPZA2 NA ABCB1 NA NA Oncogene NA NA TCGAFusion ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 CCDC136--RNA5SP250/AC104843.1 frameshift CCDC136 NA RNA5SP250 AC104843.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 CDK14--THSD7A frameshift CDK14 NA THSD7A NA Kinase NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 CHD2--AC091078.1 frameshift CHD2 NA AC091078.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 CHD2--TBC1D2B in-frame CHD2 NA TBC1D2B NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 CNOT4--AC211433.3/GTF2I other CNOT4 NA AC211433.3 GTF2I NA NA NA TranscriptionFactor NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 CNTNAP2--DYNC1I1 frameshift CNTNAP2 NA DYNC1I1 NA TumorSuppressorGene, CosmicCensus NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 CREB3L2--NXPH1/AC009500.1 frameshift CREB3L2 NA NXPH1 AC009500.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 CUX1--AC073136.1 frameshift CUX1 NA AC073136.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 CUX1--AC073136.1/AC073136.2 frameshift CUX1 NA AC073136.1 AC073136.2 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 CUX1--NUPR2/AC006970.1 frameshift CUX1 NA NUPR2 AC006970.1 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 CYP51A1--DFNA5 other CYP51A1 NA DFNA5 NA NA TumorSuppressorGene NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 +BS_68KX6A42 DBNL--DGKB frameshift DBNL NA DGKB NA NA Kinase NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 DGKB--CALM1P2/AC073347.1 frameshift DGKB NA CALM1P2 AC073347.1 Kinase NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 EXOC4--PAXBP1P1/DPP6 frameshift EXOC4 NA PAXBP1P1 DPP6 Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 FAM20C--POU6F2 other FAM20C NA POU6F2 NA NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 GLI3--AC092013.1/SOCS5P1 frameshift GLI3 NA AC092013.1 SOCS5P1 Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 GNA12--NXPH1 in-frame GNA12 NA NXPH1 NA Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 GNA12--STARD3NL frameshift GNA12 NA STARD3NL NA Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 GRID2IP--TERT frameshift GRID2IP NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 GTF2I--CNTNAP2 other GTF2I NA CNTNAP2 NA TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 GTF2I--MET other GTF2I NA MET NA TranscriptionFactor Kinase, CosmicCensus, Oncogene, Kinase NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 +BS_68KX6A42 GTF2I--MPP6 other GTF2I NA MPP6 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 H2AFV--DGKB frameshift H2AFV NA DGKB NA NA Kinase NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 HGF--NPM1P14/AC002463.1 frameshift HGF NA NPM1P14 AC002463.1 Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 HIP1--NOG/C17orf67 frameshift HIP1 NA NOG C17orf67 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 HIPK2--ZNF804B frameshift HIPK2 NA ZNF804B NA Kinase, TumorSuppressorGene, Oncogene, Kinase TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 HOPX--SPINK2 frameshift HOPX NA SPINK2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 IGF1R--AC091941.1/AC091912.2 frameshift IGF1R NA AC091941.1 AC091912.2 Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 IGF1R--FAM169B frameshift IGF1R NA FAM169B NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 IGF1R--RNU1-76P/AC091941.1 frameshift IGF1R NA RNU1-76P AC091941.1 Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 IKZF1--AC004830.1 frameshift IKZF1 NA AC004830.1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 IKZF1--CFAP69 frameshift IKZF1 NA CFAP69 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 IKZF1--CNTNAP2 in-frame IKZF1 NA CNTNAP2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 IKZF1--CNTNAP2 frameshift IKZF1 NA CNTNAP2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 IKZF1--FOXK1 frameshift IKZF1 NA FOXK1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 IKZF1--GALNT17 frameshift IKZF1 NA GALNT17 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 JAZF1--AC005165.1 frameshift JAZF1 NA AC005165.1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 JAZF1--AC091705.1/AC005165.1 frameshift JAZF1 NA AC091705.1 AC005165.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 KIAA1147--TRGV7 frameshift KIAA1147 NA TRGV7 NA Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 KIAA1147--TRGV8 frameshift KIAA1147 NA TRGV8 NA Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 KIAA1549--TNRC18 frameshift KIAA1549 NA TNRC18 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 KIAA1549--TNRC18 in-frame KIAA1549 NA TNRC18 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 KMT2C--CALCR frameshift KMT2C NA CALCR NA TumorSuppressorGene, CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 KMT2C--SFRP4/STARD3NL frameshift KMT2C NA SFRP4 STARD3NL TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 MAD1L1--AC092100.1/Y_RNA frameshift MAD1L1 NA AC092100.1 Y_RNA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 MARCH6--TERT frameshift MARCH6 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 MDH2--C7orf65/HUS1 frameshift MDH2 NA C7orf65 HUS1 NA NA NA Oncogene NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 MET--MET in-frame MET NA MET NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 MPP6--CNTNAP2 frameshift MPP6 NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 NUP205--LINC01510/MET frameshift NUP205 NA LINC01510 MET NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 NUP205--STK17A frameshift NUP205 NA STK17A NA NA Kinase NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 NXPH1--SRPK2 frameshift NXPH1 NA SRPK2 NA NA Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 OSBPL3--AC005487.1/AC002487.1 frameshift OSBPL3 NA AC005487.1 AC002487.1 Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 PIAS1--AC091912.1/LINC02226 frameshift PIAS1 NA AC091912.1 LINC02226 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 PIAS1--MARCH6 in-frame PIAS1 NA MARCH6 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 PIAS1--SENP8 in-frame PIAS1 NA SENP8 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 PTN--AC093813.1/AC073133.1 other PTN NA AC093813.1 AC073133.1 Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 PTN--DNAH11 other PTN NA DNAH11 NA Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 PTN--MET other PTN NA MET NA Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 +BS_68KX6A42 PTPN12--CALN1 frameshift PTPN12 NA CALN1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 PTPRN2--GNA12 in-frame PTPRN2 NA GNA12 NA NA Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 PTPRN2--GNA12 frameshift PTPRN2 NA GNA12 NA NA Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 PTPRN2--ZNF786 in-frame PTPRN2 NA ZNF786 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 PTPRN2--ZNF786 frameshift PTPRN2 NA ZNF786 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 RALA--KMT2C other RALA NA KMT2C NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 RNF216--KMT2E frameshift RNF216 NA KMT2E NA Oncogene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 SCFD2--IGFBP7 in-frame SCFD2 NA IGFBP7 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 SCFD2--IGFBP7 frameshift SCFD2 NA IGFBP7 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 SEMA3C--SHH frameshift SEMA3C NA SHH NA NA Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 SLC26A4--MET frameshift SLC26A4 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 SLC29A4--ZNF735 in-frame SLC29A4 NA ZNF735 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 SND1--TMEM176B other SND1 NA TMEM176B NA CosmicCensus NA NA NA NA STARFUSION, ARRIBA 2 PT_RYMG3M91 +BS_68KX6A42 SSBP1--CADPS2 in-frame SSBP1 NA CADPS2 NA NA Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 ST7--EEF1A1P28/AC002127.2 frameshift ST7 NA EEF1A1P28 AC002127.2 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 ST7--RNU6-1103P/MPP6 frameshift ST7 NA RNU6-1103P MPP6 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 ST7--ZNF3 in-frame ST7 NA ZNF3 NA TumorSuppressorGene TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 ST7--ZNF3 other ST7 NA ZNF3 NA TumorSuppressorGene TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 ST7-OT4_1--ZNF3 other ST7-OT4_1 NA ZNF3 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 ST7-OT4_2--ZNF3 other ST7-OT4_2 NA ZNF3 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 ST7-OT4--ZNF3 other ST7-OT4 NA ZNF3 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 STK17A--MYL10/CUX1 frameshift STK17A NA MYL10 CUX1 Kinase NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 STK17A--RPL6P21/DGKB frameshift STK17A NA RPL6P21 DGKB Kinase NA NA Kinase NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 TRGV7/TRGV6--KIAA1147 other TRGV7 TRGV6 KIAA1147 NA NA Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 USP22--PTPRJ frameshift USP22 NA PTPRJ NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 VPS41--DGKB frameshift VPS41 NA DGKB NA NA Kinase NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 ZNF212--SLC29A4 frameshift ZNF212 NA SLC29A4 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 ZNF212--SLC29A4 other ZNF212 NA SLC29A4 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 ZNF3--ST7-OT4 other ZNF3 NA ST7-OT4 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 ZNRF2--ZNF735/ZNF679 other ZNRF2 NA ZNF735 ZNF679 NA TranscriptionFactor NA TranscriptionFactor NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 ZSCAN21--ST7 frameshift ZSCAN21 NA ST7 NA TranscriptionFactor TumorSuppressorGene NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_68KX6A42 ZSCAN21--ST7-OT4 frameshift ZSCAN21 NA ST7-OT4 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RYMG3M91 +BS_699TN5RN ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_JWW33RTB +BS_69V8P8A0 RMRP--7SK other RMRP NA 7SK NA Oncogene NA NA NA NA STARFUSION 1 PT_GBDYKSPY +BS_6DCSD5Y6 AC106779.1--CDH13 other AC106779.1 NA CDH13 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_4YWZ538V +BS_6DCSD5Y6 ATP9A--PMEPA1 frameshift ATP9A NA PMEPA1 NA NA Oncogene NA NA NA ARRIBA 1 PT_4YWZ538V +BS_6DCSD5Y6 GNAS--KCNG1/AL121785.1 frameshift GNAS NA KCNG1 AL121785.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_4YWZ538V +BS_6DCSD5Y6 GNAS--PMEPA1 frameshift GNAS NA PMEPA1 NA CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_4YWZ538V +BS_6DCSD5Y6 GNAS--TOX2 frameshift GNAS NA TOX2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_4YWZ538V +BS_6DCSD5Y6 MDFIC--ST7 frameshift MDFIC NA ST7 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_4YWZ538V +BS_6DCSD5Y6 MET/CAPZA2--MET other MET CAPZA2 MET NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_4YWZ538V +BS_6DCSD5Y6 ST7--CPED1 frameshift ST7 NA CPED1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_4YWZ538V +BS_6DCSD5Y6 ST7--CTTNBP2 in-frame ST7 NA CTTNBP2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_4YWZ538V +BS_6DCSD5Y6 TSPAN12--MET/CAPZA2 frameshift TSPAN12 NA MET CAPZA2 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_4YWZ538V +BS_6H1C1ME9 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_1MW98VR1 +BS_6H1C1ME9 ECT2L--ECT2L frameshift ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_1MW98VR1 +BS_6H1C1ME9 THADA--THADA in-frame THADA NA THADA NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_1MW98VR1 +BS_6HTK4YJP EVC--STK32B frameshift EVC NA STK32B NA NA Kinase NA NA NA ARRIBA 1 PT_7F3ZPZB7 +BS_6HTK4YJP MYO9A--ARHGAP26 frameshift MYO9A NA ARHGAP26 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_7F3ZPZB7 +BS_6HTK4YJP SLC12A7--ZBTB16 frameshift SLC12A7 NA ZBTB16 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_7F3ZPZB7 +BS_6JHXXVR7 ABR--EVI2B frameshift ABR NA EVI2B NA Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 ABR--EVI2B other ABR NA EVI2B NA Oncogene NA NA NA NA STARFUSION 1 PT_9PJR0ZK7 +BS_6JHXXVR7 AC078785.1--ZBTB20 other AC078785.1 NA ZBTB20 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 API5--SLX4 frameshift API5 NA SLX4 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 BRSK1--HSPD1P15/CDH18 frameshift BRSK1 NA HSPD1P15 CDH18 Kinase, TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 CCND3--AMPD3 other CCND3 NA AMPD3 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_6JHXXVR7 CCND3--PTCRA other CCND3 NA PTCRA NA CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 CDC42BPA--TMEM161B-AS1 frameshift CDC42BPA NA TMEM161B-AS1 NA Kinase NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 CDC5L--AL135908.1 frameshift CDC5L NA AL135908.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 CDC5L--AL135908.1 other CDC5L NA AL135908.1 NA TranscriptionFactor NA NA NA NA STARFUSION 1 PT_9PJR0ZK7 +BS_6JHXXVR7 CDC5L--CPNE5 frameshift CDC5L NA CPNE5 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 CLUHP3--AC004080.4/HOXA9 other CLUHP3 NA AC004080.4 HOXA9 NA NA NA CosmicCensus, Oncogene, TranscriptionFactor NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 CNOT4--JAZF1 other CNOT4 NA JAZF1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 COPB1--RAG1 frameshift COPB1 NA RAG1 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 CREBBP--APP in-frame CREBBP NA APP NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 CUX1--CUX1 frameshift CUX1 NA CUX1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 CUX1--SPAM1 frameshift CUX1 NA SPAM1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 FANCD2--DOCK3 frameshift FANCD2 NA DOCK3 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 FN1--FASTKD2 in-frame FN1 NA FASTKD2 NA Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 FN1--FASTKD2 other FN1 NA FASTKD2 NA Oncogene NA NA NA NA STARFUSION 1 PT_9PJR0ZK7 +BS_6JHXXVR7 FN1--MDH1B frameshift FN1 NA MDH1B NA Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 FOXP2--AC016831.1 frameshift FOXP2 NA AC016831.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 FOXP2--GPR22 frameshift FOXP2 NA GPR22 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 GCC1--CDH10 other GCC1 NA CDH10 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 HRAT17/AC073346.2--FOXP2 other HRAT17 AC073346.2 FOXP2 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 KCTD20--HIPK3 other KCTD20 NA HIPK3 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 LHFPL2--TERT other LHFPL2 NA TERT NA NA CosmicCensus, Oncogene, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_6JHXXVR7 LINC-PINT--AC092167.1 other LINC-PINT NA AC092167.1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 LINC-PINT--AC092167.1/IMMP2L other LINC-PINT NA AC092167.1 IMMP2L TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 LMO2/CAPRIN1--NPSR1-AS1 other LMO2 CAPRIN1 NPSR1-AS1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 METTL22--LMO2/CAPRIN1 frameshift METTL22 NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 NDUFA5--CDH10/AC091893.1 frameshift NDUFA5 NA CDH10 AC091893.1 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 NF1--ABR frameshift NF1 NA ABR NA TumorSuppressorGene, CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 NFKBIE--GPR156 frameshift NFKBIE NA GPR156 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 NFKBIE--RNA5SP178/MARCH11 frameshift NFKBIE NA RNA5SP178 MARCH11 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 NFKBIE--ZBTB9/GGNBP1 frameshift NFKBIE NA ZBTB9 GGNBP1 CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 NPAS3--RNU6-1060P/AL139231.1 frameshift NPAS3 NA RNU6-1060P AL139231.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 NUP205--LINC01510/MET frameshift NUP205 NA LINC01510 MET NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 NUP98--NFKBIE other NUP98 NA NFKBIE NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_6JHXXVR7 PIK3CB--LINC01449/INHBA frameshift PIK3CB NA LINC01449 INHBA CosmicCensus, Kinase NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 PNPLA8--FBXL13 other PNPLA8 NA FBXL13 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 PTPRH--CDH10/AC091893.1 frameshift PTPRH NA CDH10 AC091893.1 Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 RHOA--AC048334.1/LINC02042 other RHOA NA AC048334.1 LINC02042 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 RHOA--CD200R1 other RHOA NA CD200R1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 RHOA--LINC02042/AC092892.1 other RHOA NA LINC02042 AC092892.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 RSPH9--STK38/SRSF3 other RSPH9 NA STK38 SRSF3 NA Kinase NA CosmicCensus, Oncogene NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 SLX4--PRKCB other SLX4 NA PRKCB NA TumorSuppressorGene TumorSuppressorGene, CosmicCensus, Kinase NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 SRF--NOMO2 frameshift SRF NA NOMO2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 SRPK1--KLHL28 frameshift SRPK1 NA KLHL28 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 SRPK1--RNU6-679P/AC106771.1 frameshift SRPK1 NA RNU6-679P AC106771.1 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 TERT/MIR4457--LHFPL2 other TERT MIR4457 LHFPL2 NA CosmicCensus, Oncogene, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 ZBTB20--LINC02044 other ZBTB20 NA LINC02044 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6JHXXVR7 ZNF318--LINC01493/AC021723.1 frameshift ZNF318 NA LINC01493 AC021723.1 Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_6M2053M0 AZIN1--RSPO2 other AZIN1 NA RSPO2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_RE6AXQM1 +BS_6M2053M0 FAT3--DISC1FP1/AP001002.3 frameshift FAT3 NA DISC1FP1 AP001002.3 CosmicCensus NA NA NA NA ARRIBA 1 PT_RE6AXQM1 +BS_6M2053M0 JAZF1--LINC00838/RPL23P11 frameshift JAZF1 NA LINC00838 RPL23P11 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RE6AXQM1 +BS_6M2053M0 PABPC1--CARSP2/TRPS1 frameshift PABPC1 NA CARSP2 TRPS1 CosmicCensus NA NA TranscriptionFactor NA ARRIBA 1 PT_RE6AXQM1 +BS_6M2053M0 PROX1--AP001528.1 frameshift PROX1 NA AP001528.1 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RE6AXQM1 +BS_6M2053M0 PSD3--AC124242.1/NAT1 frameshift PSD3 NA AC124242.1 NAT1 NA NA NA Oncogene NA ARRIBA 1 PT_RE6AXQM1 +BS_6M2053M0 SPECC1--AP001001.1/AP001001.2 other SPECC1 NA AP001001.1 AP001001.2 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RE6AXQM1 +BS_6M2053M0 TRIM37--CASP4 frameshift TRIM37 NA CASP4 NA Oncogene NA NA NA NA ARRIBA 1 PT_RE6AXQM1 +BS_6MY8W3H0 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_PY4QFHHV +BS_6MY8W3H0 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_PY4QFHHV +BS_6MY8W3H0 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PY4QFHHV +BS_6MY8W3H0 FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_PY4QFHHV +BS_6MY8W3H0 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_PY4QFHHV +BS_6MY8W3H0 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_PY4QFHHV +BS_6MY8W3H0 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_PY4QFHHV +BS_6MY8W3H0 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_PY4QFHHV +BS_6MZ7FRZH ASRGL1--RHOG in-frame ASRGL1 NA RHOG NA NA Oncogene NA NA NA ARRIBA 1 PT_6BX46NVR +BS_6MZ7FRZH C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_6BX46NVR +BS_6MZ7FRZH C11orf95--RELA/RN7SL309P other C11orf95 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_6BX46NVR +BS_6MZ7FRZH RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_6BX46NVR +BS_6N3AFF66 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_SBHN5F68 +BS_6T4JGBGY KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_218SX3G4 +BS_6VPKXXMR CEBPG--RHPN2 other CEBPG NA RHPN2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_6PP78VNE +BS_6VPKXXMR CTSB--RNF19A frameshift CTSB NA RNF19A NA Oncogene NA NA NA NA ARRIBA 1 PT_6PP78VNE +BS_6VPKXXMR EPHA3--GUCY2EP/AP003119.1 frameshift EPHA3 NA GUCY2EP AP003119.1 Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_6PP78VNE +BS_6VPKXXMR EPHA3--TSKU in-frame EPHA3 NA TSKU NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_6PP78VNE +BS_6VPKXXMR EPHA3--TSKU other EPHA3 NA TSKU NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA STARFUSION 1 PT_6PP78VNE +BS_6VPKXXMR GPR176--TAF1 in-frame GPR176 NA TAF1 NA NA Kinase NA NA NA ARRIBA 1 PT_6PP78VNE +BS_6VPKXXMR ROBO2--MTCYBP27/RNU6-976P frameshift ROBO2 NA MTCYBP27 RNU6-976P CosmicCensus NA NA NA NA ARRIBA 1 PT_6PP78VNE +BS_6VPKXXMR SLC14A2--RORB other SLC14A2 NA RORB NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_6PP78VNE +BS_6VPKXXMR SPRED1--EIF2AK4 frameshift SPRED1 NA EIF2AK4 NA NA Kinase NA NA NA ARRIBA 1 PT_6PP78VNE +BS_6VPKXXMR TAF1--MARK2P4/WDR17 frameshift TAF1 NA MARK2P4 WDR17 Kinase NA NA NA NA ARRIBA 1 PT_6PP78VNE +BS_6VPKXXMR TAF1--WDR17 frameshift TAF1 NA WDR17 NA Kinase NA NA NA NA ARRIBA 1 PT_6PP78VNE +BS_6VPKXXMR TRIM24--RSAD1/AC021491.1 other TRIM24 NA RSAD1 AC021491.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_6PP78VNE +BS_6WP1FHTE AC010132.3--LINC-PINT frameshift AC010132.3 NA LINC-PINT NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Z4PJA6KT +BS_6WP1FHTE AC058791.1/LINC-PINT--MET other AC058791.1 LINC-PINT MET NA NA Kinase, CosmicCensus, Oncogene, Kinase TumorSuppressorGene NA NA ARRIBA 1 PT_Z4PJA6KT +BS_6WP1FHTE AKAP13--TMBIM6 in-frame AKAP13 NA TMBIM6 NA Oncogene NA NA NA NA ARRIBA 1 PT_Z4PJA6KT +BS_6WP1FHTE C7orf25--LINC-PINT frameshift C7orf25 NA LINC-PINT NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Z4PJA6KT +BS_6WP1FHTE ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_Z4PJA6KT +BS_6WP1FHTE LANCL2--EGFR frameshift LANCL2 NA EGFR NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_Z4PJA6KT +BS_6WP1FHTE LINC-PINT--MET other LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_Z4PJA6KT +BS_6WP1FHTE NCOR1--GDPD1 frameshift NCOR1 NA GDPD1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_Z4PJA6KT +BS_6WP1FHTE PTN--FKBP6 other PTN NA FKBP6 NA Oncogene NA NA NA NA ARRIBA 1 PT_Z4PJA6KT +BS_6WP1FHTE SREBF1--TNKS frameshift SREBF1 NA TNKS NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4PJA6KT +BS_6WP1FHTE ST7--AC007036.1/ZNRF2 frameshift ST7 NA AC007036.1 ZNRF2 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_Z4PJA6KT +BS_70FFPA51 FKBP9--AC004869.1/HMGN1P19 frameshift FKBP9 NA AC004869.1 HMGN1P19 CosmicCensus NA NA NA NA ARRIBA 1 PT_BCWGRGDB +BS_70FFPA51 MIATNB--ZNF735/ZNF679 other MIATNB NA ZNF735 ZNF679 NA TranscriptionFactor NA TranscriptionFactor NA ARRIBA 1 PT_BCWGRGDB +BS_70FFPA51 NF2--PISD frameshift NF2 NA PISD NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_BCWGRGDB +BS_70FFPA51 NF2--PISD in-frame NF2 NA PISD NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_BCWGRGDB +BS_70FFPA51 PPP4R3B--ZIC5 in-frame PPP4R3B NA ZIC5 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_BCWGRGDB +BS_7327SDAQ AC108721.1--IRAK3 other AC108721.1 NA IRAK3 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_7WT6P5M8 +BS_7327SDAQ CCDC9--NPAS1 other CCDC9 NA NPAS1 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_7WT6P5M8 +BS_7327SDAQ CHFR--OR4A41P/OR4A42P frameshift CHFR NA OR4A41P OR4A42P TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_7WT6P5M8 +BS_7327SDAQ IRAK3--AC108721.1 frameshift IRAK3 NA AC108721.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_7WT6P5M8 +BS_7327SDAQ JAZF1--SDK1 frameshift JAZF1 NA SDK1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7WT6P5M8 +BS_7327SDAQ NUTM2A-AS1--PTEN other NUTM2A-AS1 NA PTEN NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_7WT6P5M8 +BS_7327SDAQ TCF12--ALDH1A2 frameshift TCF12 NA ALDH1A2 NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene NA NA NA ARRIBA 1 PT_7WT6P5M8 +BS_7327SDAQ TCF12--POLR2M frameshift TCF12 NA POLR2M NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7WT6P5M8 +BS_7327SDAQ TMEM132E--ETV4 in-frame TMEM132E NA ETV4 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_7WT6P5M8 +BS_7327SDAQ TMEM132E--ETV4 frameshift TMEM132E NA ETV4 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_7WT6P5M8 +BS_7327SDAQ ZNF521--RAD51C frameshift ZNF521 NA RAD51C NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene NA NA NA ARRIBA 1 PT_7WT6P5M8 +BS_742RHK1M CDC42BPA--MEG8 frameshift CDC42BPA NA MEG8 NA Kinase NA NA NA NA ARRIBA 1 PT_1TB2V1PH +BS_74FS6GMW AL138752.2--CUX1 frameshift AL138752.2 NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_XTVQB9S4 +BS_74FS6GMW AL138752.2--CUX1 in-frame AL138752.2 NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_XTVQB9S4 +BS_74FS6GMW CUX1--AL138752.2 frameshift CUX1 NA AL138752.2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_XTVQB9S4 +BS_74FS6GMW CUX1--SHB frameshift CUX1 NA SHB NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_XTVQB9S4 +BS_74FS6GMW SHB--CUX1 frameshift SHB NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_XTVQB9S4 +BS_74FS6GMW SHB--CUX1 in-frame SHB NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_XTVQB9S4 +BS_74G5K7JF AF127577.4--NRIP1 other AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA ARRIBA 1 PT_8PV84CNE +BS_74G5K7JF PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_8PV84CNE +BS_77317DY4 AL592463.1/MUSK--AL592463.1 other AL592463.1 MUSK AL592463.1 NA NA NA Kinase, Kinase NA NA ARRIBA 1 PT_D7KMPYTZ +BS_77317DY4 RNU6-25P--RMRP other RNU6-25P NA RMRP NA NA Oncogene NA NA NA ARRIBA 1 PT_D7KMPYTZ +BS_775HDFNY KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_GCKT4FJX +BS_7B89YR6K ROBO2--ROBO2 frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_ZZWYKZZ8 +BS_7BTZQKYY ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY DNAH9--DNAH9 frameshift DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY ECT2L--ECT2L frameshift ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY FAT3--NDUFB11P1/FAT3 frameshift FAT3 NA NDUFB11P1 FAT3 CosmicCensus NA NA CosmicCensus NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY FOXP2--FOXP2 frameshift FOXP2 NA FOXP2 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY LINC01019--LINC01019/IRX1 other LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY LMNTD1--LMNTD1 frameshift LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY LRGUK--LRGUK in-frame LRGUK NA LRGUK NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY PAPPA2--PAPPA2 frameshift PAPPA2 NA PAPPA2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY PRKD1--AL133372.2 other PRKD1 NA AL133372.2 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY PRKD1--AL133372.2 frameshift PRKD1 NA AL133372.2 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY RFX3--RFX3 in-frame RFX3 NA RFX3 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_QZN7FZER +BS_7BTZQKYY RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_QZN7FZER +BS_7BW0YRPY ARHGEF12--ETS1 frameshift ARHGEF12 NA ETS1 NA TumorSuppressorGene, CosmicCensus, Oncogene Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_0T2EWNYR +BS_7C40TRCY JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_NCDHZ8H8 +BS_7FWZ518S CDH10--CDH10 frameshift CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_SBP79T7F +BS_7FWZ518S CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_SBP79T7F +BS_7FWZ518S FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_SBP79T7F +BS_7FWZ518S PRKAR2A--ULK4 frameshift PRKAR2A NA ULK4 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_SBP79T7F +BS_7FWZ518S ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_SBP79T7F +BS_7FWZ518S ZNF664--GTF2H3 other ZNF664 NA GTF2H3 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_SBP79T7F +BS_7G42J2SK ADAMTS2--CLK4 in-frame ADAMTS2 NA CLK4 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_BWN251DF +BS_7G42J2SK CADM1--AP003063.1/AP003100.1 frameshift CADM1 NA AP003063.1 AP003100.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK CADM1--SLC17A6 frameshift CADM1 NA SLC17A6 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK CDKL4--CDKL4/MAP4K3 frameshift CDKL4 NA CDKL4 MAP4K3 Kinase, Kinase Kinase, Kinase NA Kinase NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK CNTRL--CNTRL frameshift CNTRL NA CNTRL NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK EIF4G3--SETD1B other EIF4G3 NA SETD1B NA NA CosmicCensus NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK FRYL--FRYL in-frame FRYL NA FRYL NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK KMT2C--KMT2C frameshift KMT2C NA KMT2C NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK NBEA--NBEA frameshift NBEA NA NBEA NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK NEK10--NEK10 frameshift NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK NUMA1--AP001994.1/AP001360.1 frameshift NUMA1 NA AP001994.1 AP001360.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK PBRM1--PBRM1 in-frame PBRM1 NA PBRM1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK RAB6A--PIK3C2A frameshift RAB6A NA PIK3C2A NA NA Kinase NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK RELA--AP001994.1/AP001360.1 frameshift RELA NA AP001994.1 AP001360.1 Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK UBE4B--UBE4B frameshift UBE4B NA UBE4B NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK UBR5--UBR5 in-frame UBR5 NA UBR5 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_BWN251DF +BS_7G42J2SK WRN--WRN frameshift WRN NA WRN NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BWN251DF +BS_7GJT4A6A FAM208A--ROBO2 frameshift FAM208A NA ROBO2 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_9JT1441X +BS_7GJT4A6A PRKCE--AC073111.4 frameshift PRKCE NA AC073111.4 NA TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_9JT1441X +BS_7GJT4A6A PRKCE--AC073111.5 frameshift PRKCE NA AC073111.5 NA TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_9JT1441X +BS_7GJT4A6A STAG1--CLRN1-AS1 frameshift STAG1 NA CLRN1-AS1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9JT1441X +BS_7GJT4A6A UBE3C--EXOC4 in-frame UBE3C NA EXOC4 NA NA Oncogene NA NA NA ARRIBA 1 PT_9JT1441X +BS_7N0B2CY1 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_NPHZQW6A +BS_7N0B2CY1 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NPHZQW6A +BS_7N0B2CY1 KIAA1549--KIAA1549 in-frame KIAA1549 NA KIAA1549 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_NPHZQW6A +BS_7P83Z28P AC023968.2/AC023968.1--ZNF75A other AC023968.2 AC023968.1 ZNF75A NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_K63972GG +BS_7P83Z28P KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_K63972GG +BS_7P83Z28P PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_K63972GG +BS_7WM3MNZ0 BMP2K--RPS23P3/RNU6-699P frameshift BMP2K NA RPS23P3 RNU6-699P Kinase NA NA NA NA ARRIBA 1 PT_W5GP3F6B +BS_7XRN3CFX AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_7XRN3CFX AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_7XRN3CFX CDH10--CDH10 frameshift CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_7XRN3CFX CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_7XRN3CFX ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_7XRN3CFX KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_7XRN3CFX KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_7XRN3CFX KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_7XRN3CFX MTAP--AL354994.1 frameshift MTAP NA AL354994.1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_7XRN3CFX WNK3--WNK3 in-frame WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_7Z93ZYMS KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_3J0ASVHN +BS_7ZV3DPGT CNTN6--CNTN6/RPL23AP38 other CNTN6 NA CNTN6 RPL23AP38 Oncogene Oncogene NA NA NA ARRIBA 1 PT_QD6KKKJH +BS_7ZV3DPGT GPC5--MIR17HG/GPC5 frameshift GPC5 NA MIR17HG GPC5 TumorSuppressorGene, CosmicCensus, Oncogene NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA ARRIBA 1 PT_QD6KKKJH +BS_81SP2HX4 CCND2--MYRIP frameshift CCND2 NA MYRIP NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_81SP2HX4 CCND2--NINJ2 other CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_XA98HG1C +BS_81SP2HX4 CCND2--PARP11 frameshift CCND2 NA PARP11 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_81SP2HX4 ERC1--AC005842.1/AC007207.2 other ERC1 NA AC005842.1 AC007207.2 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_81SP2HX4 ERC1--PRMT8 frameshift ERC1 NA PRMT8 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_81SP2HX4 FHL2/NCK2--COBLL1 other FHL2 NCK2 COBLL1 NA Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_81SP2HX4 MAP4--CNTN4 in-frame MAP4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C +BS_81SP2HX4 MAP4--FECHP1/KRT8P18 frameshift MAP4 NA FECHP1 KRT8P18 Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_81SP2HX4 NGEF--CSRNP3 frameshift NGEF NA CSRNP3 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_XA98HG1C +BS_81SP2HX4 NGEF--CSRNP3/GALNT3 frameshift NGEF NA CSRNP3 GALNT3 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_XA98HG1C +BS_81SP2HX4 NMT1--RPS6KB1 frameshift NMT1 NA RPS6KB1 NA Oncogene Kinase NA NA NA ARRIBA 1 PT_XA98HG1C +BS_81SP2HX4 PRMT8--AC007207.1/CCND2-AS1 frameshift PRMT8 NA AC007207.1 CCND2-AS1 NA NA NA Oncogene NA ARRIBA 1 PT_XA98HG1C +BS_81SP2HX4 PRMT8--CCND2 frameshift PRMT8 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C +BS_81SP2HX4 TANK--AC062031.1/RNU7-2P frameshift TANK NA AC062031.1 RNU7-2P TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_81SP2HX4 UBE2E1--SNORD77/ALS2CL frameshift UBE2E1 NA SNORD77 ALS2CL NA NA NA Oncogene NA ARRIBA 1 PT_XA98HG1C +BS_84XCR9GG AC011625.1--TRRAP other AC011625.1 NA TRRAP NA NA Kinase, CosmicCensus, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_CB1DN0V8 +BS_84XCR9GG ANXA7--MRPS21P6/RPS27P18 frameshift ANXA7 NA MRPS21P6 RPS27P18 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG DUSP5--DOCK1 in-frame DUSP5 NA DOCK1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG DUSP5--DOCK1 frameshift DUSP5 NA DOCK1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG FAM107B--ADARB2 other FAM107B NA ADARB2 NA NA Oncogene NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG INPP4B--AC105384.1 other INPP4B NA AC105384.1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG INPP4B--AC124017.1 other INPP4B NA AC124017.1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG INPP4B--AC124017.1/AC105384.1 other INPP4B NA AC124017.1 AC105384.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG INPP4B--LNX1 other INPP4B NA LNX1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG LHPP--SLK frameshift LHPP NA SLK NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG MAPK8--SLIT1 other MAPK8 NA SLIT1 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG PLCE1--C10orf35/AL450311.1 frameshift PLCE1 NA C10orf35 AL450311.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG PTN--HSPE1 other PTN NA HSPE1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG SLK--LHPP frameshift SLK NA LHPP NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG TRRAP--NPM1P14/AC002463.1 frameshift TRRAP NA NPM1P14 AC002463.1 Kinase, CosmicCensus, Kinase NA NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG UNC5B--GRID1 frameshift UNC5B NA GRID1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG VAV3--5S_rRNA/DEFB115 frameshift VAV3 NA 5S_rRNA DEFB115 Oncogene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG VAV3--DEFB115 frameshift VAV3 NA DEFB115 NA Oncogene NA NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_84XCR9GG ZNF33B--AL583859.2/AL136452.1 frameshift ZNF33B NA AL583859.2 AL136452.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_CB1DN0V8 +BS_893A91ZM ZBTB38--ADAMTSL1 other ZBTB38 NA ADAMTSL1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_K8ZV7APT +BS_8D0NYM46 SMAD4/AC090330.1--LINC01630 other SMAD4 AC090330.1 LINC01630 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_PNED3GG3 +BS_8F9BDWY4 ADAM9--TACC1/PLEKHA2 frameshift ADAM9 NA TACC1 PLEKHA2 Oncogene Oncogene NA Oncogene NA ARRIBA 1 PT_XY404K0D +BS_8F9BDWY4 AL359634.1/MCM9--MCM9 other AL359634.1 MCM9 MCM9 NA NA TumorSuppressorGene TumorSuppressorGene NA NA ARRIBA 1 PT_XY404K0D +BS_8F9BDWY4 ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_XY404K0D +BS_8F9BDWY4 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XY404K0D +BS_8F9BDWY4 FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_XY404K0D +BS_8F9BDWY4 FGFR1--TACC1 in-frame FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_XY404K0D +BS_8F9BDWY4 JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_XY404K0D +BS_8F9BDWY4 TFDP2--TFDP2 frameshift TFDP2 NA TFDP2 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_XY404K0D +BS_8GW1TMV2 AC022701.1/AC016383.1--DCC other AC022701.1 AC016383.1 DCC NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_GR8P8NY5 +BS_8GW1TMV2 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_GR8P8NY5 +BS_8GW1TMV2 DDX1--AC008164.1/AC008069.1 frameshift DDX1 NA AC008164.1 AC008069.1 Oncogene NA NA NA NA ARRIBA 1 PT_GR8P8NY5 +BS_8GW1TMV2 TFE3--AC245047.7/SSX5 frameshift TFE3 NA AC245047.7 SSX5 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_GR8P8NY5 +BS_8J3B6ZB6 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_EF398HVC +BS_8MA5B8Y9 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_AP658JQV +BS_8MA5B8Y9 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_AP658JQV +BS_8MA5B8Y9 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_AP658JQV +BS_8MA5B8Y9 CNTN4--CNTN4 in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AP658JQV +BS_8MA5B8Y9 CTBP2--MGMT other CTBP2 NA MGMT NA NA CosmicCensus NA NA TCGAFusion ARRIBA 1 PT_AP658JQV +BS_8MA5B8Y9 DMXL1--SOX6 frameshift DMXL1 NA SOX6 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_AP658JQV +BS_8MA5B8Y9 DOT1L--TMPRSS9 other DOT1L NA TMPRSS9 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_AP658JQV +BS_8MA5B8Y9 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AP658JQV +BS_8MA5B8Y9 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_AP658JQV +BS_8MA5B8Y9 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_AP658JQV +BS_8MA5B8Y9 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AP658JQV +BS_8MA5B8Y9 MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_AP658JQV +BS_8MA5B8Y9 ZNF592--LINC00924/AC015574.1 frameshift ZNF592 NA LINC00924 AC015574.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_AP658JQV +BS_8MA5B8Y9 ZNF592--LINC02254 frameshift ZNF592 NA LINC02254 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_AP658JQV +BS_8NY9J9NQ EGFR--AC004899.1/GDI2P1 frameshift EGFR NA AC004899.1 GDI2P1 Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_JEW5HG4W +BS_8NY9J9NQ NF2--AC069503.3/PSMD9 frameshift NF2 NA AC069503.3 PSMD9 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_JEW5HG4W +BS_8NY9J9NQ PATJ--PRF1 in-frame PATJ NA PRF1 NA Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JEW5HG4W +BS_8NY9J9NQ PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_JEW5HG4W +BS_8NY9J9NQ RMRP--AL355075.4 other RMRP NA AL355075.4 NA Oncogene NA NA NA NA STARFUSION 1 PT_JEW5HG4W +BS_8NY9J9NQ RTN3--RNA5-8SP4/ZNF254 frameshift RTN3 NA RNA5-8SP4 ZNF254 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_JEW5HG4W +BS_8NY9J9NQ SGPL1--DIP2C other SGPL1 NA DIP2C NA NA Oncogene NA NA NA ARRIBA 1 PT_JEW5HG4W +BS_8NY9J9NQ TFCP2--TMPRSS12 frameshift TFCP2 NA TMPRSS12 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JEW5HG4W +BS_8NY9J9NQ TFCP2--TMPRSS12 in-frame TFCP2 NA TMPRSS12 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JEW5HG4W +BS_8NY9J9NQ ZNF33A--SKINT1L frameshift ZNF33A NA SKINT1L NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JEW5HG4W +BS_8PNA0V6R AC011444.1--GADD45GIP1 other AC011444.1 NA GADD45GIP1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_QQZXYR4M +BS_8PNA0V6R PBRM1--PBRM1 frameshift PBRM1 NA PBRM1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_QQZXYR4M +BS_8PNA0V6R WNK3--WNK3 in-frame WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_QQZXYR4M +BS_8PNA0V6R ZNF121--POLRMT frameshift ZNF121 NA POLRMT NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_QQZXYR4M +BS_8Q77HZ4R PRDM16--SPAG16 other PRDM16 NA SPAG16 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_YBJYA2CD +BS_8RCR7Y4B MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RXJZ3C5G +BS_8RCR7Y4B PIK3C3--PIK3C3 in-frame PIK3C3 NA PIK3C3 NA Kinase Kinase NA NA NA ARRIBA 1 PT_RXJZ3C5G +BS_8RHPJ740 CSMD3--CSMD3 frameshift CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_ZA95JQEB +BS_8RHPJ740 ECT2L--ECT2L frameshift ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_ZA95JQEB +BS_8RHPJ740 FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_ZA95JQEB +BS_8RHPJ740 MYO3A--MYO3A frameshift MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_ZA95JQEB +BS_8RHPJ740 NTRK3--NTRK3 other NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_ZA95JQEB +BS_8RHPJ740 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ZA95JQEB +BS_8S86CM61 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_SA94083W +BS_8S86CM61 ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_SA94083W +BS_8SKZ7BRN CROCCP2--ZBTB8B other CROCCP2 NA ZBTB8B NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_9D2N4S5Z +BS_8SKZ7BRN ZNF384--AC018653.2/ACSM4 frameshift ZNF384 NA AC018653.2 ACSM4 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9D2N4S5Z +BS_8T7DZV2F AF127577.4--NRIP1 other AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA ARRIBA 1 PT_62VNQ8C4 +BS_8T7DZV2F RTKN2--RN7SL591P/ZNF365 frameshift RTKN2 NA RN7SL591P ZNF365 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_62VNQ8C4 +BS_8VAZSJEN KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_6R95FQT2 +BS_8Z3SCKB5 CNBD1--AC090572.3 frameshift CNBD1 NA AC090572.3 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_66XN3MT1 +BS_8Z3SCKB5 RMRP--AL139099.5 other RMRP NA AL139099.5 NA Oncogene NA NA NA NA STARFUSION 1 PT_66XN3MT1 +BS_8Z3SCKB5 RMRP--RN7SL1 other RMRP NA RN7SL1 NA Oncogene NA NA NA NA STARFUSION 1 PT_66XN3MT1 +BS_8ZD6J47V ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_4347ZBEX +BS_8ZD6J47V ASTN2--ANKS6 in-frame ASTN2 NA ANKS6 NA Oncogene NA NA NA NA ARRIBA 1 PT_4347ZBEX +BS_8ZD6J47V CABLES1--LAMA3 frameshift CABLES1 NA LAMA3 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_4347ZBEX +BS_8ZD6J47V FLJ31104/AC008892.1--POU6F1 other FLJ31104 AC008892.1 POU6F1 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_4347ZBEX +BS_8ZD6J47V MSH3--MSH3 frameshift MSH3 NA MSH3 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_4347ZBEX +BS_8ZD6J47V MYLK--MYLK frameshift MYLK NA MYLK NA Kinase Kinase NA NA NA ARRIBA 1 PT_4347ZBEX +BS_8ZD6J47V POU6F1--FLJ31104/AC008892.1 other POU6F1 NA FLJ31104 AC008892.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_4347ZBEX +BS_8ZP3CBQA CDH20--CDH20 frameshift CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_T4VKB29K +BS_8ZP3CBQA ECT2L--ECT2L frameshift ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_T4VKB29K +BS_8ZP3CBQA LMNTD1--LMNTD1 frameshift LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_T4VKB29K +BS_8ZP3CBQA RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_T4VKB29K +BS_8ZS9F31R FARSA--ERCC2 in-frame FARSA NA ERCC2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_8ZS9F31R FARSA--ERCC2 other FARSA NA ERCC2 NA NA CosmicCensus, Oncogene NA NA NA STARFUSION 1 PT_DW2XRPC9 +BS_8ZS9F31R FOXN3--EFCAB11 frameshift FOXN3 NA EFCAB11 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_8ZS9F31R FOXN3--EFCAB11 other FOXN3 NA EFCAB11 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_8ZS9F31R GAS2--RB1CC1 frameshift GAS2 NA RB1CC1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_8ZS9F31R GAS2--RB1CC1/NPBWR1 frameshift GAS2 NA RB1CC1 NPBWR1 NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_8ZS9F31R OIP5--PRKAA1 other OIP5 NA PRKAA1 NA NA TumorSuppressorGene, Kinase NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_8ZS9F31R PRKAA1--OIP5 frameshift PRKAA1 NA OIP5 NA TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_8ZS9F31R TCF4--TCP10 in-frame TCF4 NA TCP10 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_8ZS9F31R ZNF586--AC104458.1/TPI1P1 other ZNF586 NA AC104458.1 TPI1P1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DW2XRPC9 +BS_8ZY4GST0 CBX4--ILF3 frameshift CBX4 NA ILF3 NA Oncogene NA NA NA NA ARRIBA 1 PT_V1HNAC2Q +BS_8ZY4GST0 HDHD5-AS1--HIRA other HDHD5-AS1 NA HIRA NA NA TumorSuppressorGene NA NA NA STARFUSION, ARRIBA 2 PT_V1HNAC2Q +BS_8ZY4GST0 KIAA1211--FIP1L1 other KIAA1211 NA FIP1L1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_V1HNAC2Q +BS_8ZY4GST0 LCORL--SCFD2 in-frame LCORL NA SCFD2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_V1HNAC2Q +BS_8ZY4GST0 LNX1--KIT frameshift LNX1 NA KIT NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_V1HNAC2Q +BS_8ZY4GST0 NFIC--GRIA4 other NFIC NA GRIA4 NA Oncogene, TranscriptionFactor NA NA NA NA STARFUSION, ARRIBA 2 PT_V1HNAC2Q +BS_8ZY4GST0 PDGFRA--FIP1L1 other PDGFRA NA FIP1L1 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_V1HNAC2Q +BS_8ZY4GST0 SH3GL1--AP001001.2/AP002001.1 frameshift SH3GL1 NA AP001001.2 AP002001.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_V1HNAC2Q +BS_8ZY4GST0 TMEM165--CHIC2 in-frame TMEM165 NA CHIC2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_V1HNAC2Q +BS_90B22NGP ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_JCECCFPB +BS_90B22NGP MTSS1--MTSS1 frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_JCECCFPB +BS_90B22NGP PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_JCECCFPB +BS_912NX4Y0 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_1P436YMM +BS_912NX4Y0 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_1P436YMM +BS_912NX4Y0 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_1P436YMM +BS_912NX4Y0 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_1P436YMM +BS_912NX4Y0 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_1P436YMM +BS_912NX4Y0 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_1P436YMM +BS_91VYM11A BCAT1--TNN frameshift BCAT1 NA TNN NA NA Oncogene NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_91VYM11A RBM5--SUCLG2 frameshift RBM5 NA SUCLG2 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_91VYM11A SMG1--OR8B10P/AP000916.2 frameshift SMG1 NA OR8B10P AP000916.2 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_91VYM11A WFS1--PLAG1 other WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_MDWPRDBT +BS_92VDQ0NE AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DFQAH7RS +BS_92VDQ0NE AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DFQAH7RS +BS_92VDQ0NE CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_DFQAH7RS +BS_92VDQ0NE ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DFQAH7RS +BS_92VDQ0NE FPGT-TNNI3K--FPGT-TNNI3K frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_DFQAH7RS +BS_92VDQ0NE KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DFQAH7RS +BS_92VDQ0NE KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DFQAH7RS +BS_92VDQ0NE KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DFQAH7RS +BS_92VDQ0NE NBEA--AC023310.4/NBEAP1 frameshift NBEA NA AC023310.4 NBEAP1 CosmicCensus NA NA Oncogene NA ARRIBA 1 PT_DFQAH7RS +BS_9755PSCS ATRX--ATP7A frameshift ATRX NA ATP7A NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_KBA2VNA2 +BS_9755PSCS ATRX--ATP7A other ATRX NA ATP7A NA CosmicCensus, Oncogene NA NA NA NA STARFUSION 1 PT_KBA2VNA2 +BS_9755PSCS ZNF395--AC124290.1 other ZNF395 NA AC124290.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KBA2VNA2 +BS_983Z6CA6 ERMN--ROR2 frameshift ERMN NA ROR2 NA NA Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA ARRIBA 1 PT_3KM9W8S8 +BS_996ZS2A4 AC139143.1/SYT8--ACTB other AC139143.1 SYT8 ACTB NA NA Oncogene NA NA NA ARRIBA 1 PT_RX1EWBP9 +BS_996ZS2A4 ADAMTS14--PRF1/ADAMTS14 frameshift ADAMTS14 NA PRF1 ADAMTS14 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_RX1EWBP9 +BS_996ZS2A4 MYH9--EIF3D in-frame MYH9 NA EIF3D NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RX1EWBP9 +BS_996ZS2A4 PTPN12--SRRM3 other PTPN12 NA SRRM3 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RX1EWBP9 +BS_996ZS2A4 SFMBT2--LINC00707/AL392086.1 frameshift SFMBT2 NA LINC00707 AL392086.1 Oncogene NA NA NA NA ARRIBA 1 PT_RX1EWBP9 +BS_99B1XRZQ EPHA4--PGM2 in-frame EPHA4 NA PGM2 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_3VCS1PPF +BS_99B1XRZQ NEK11--TMEM108 frameshift NEK11 NA TMEM108 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_3VCS1PPF +BS_9BJARSX3 BRINP1--BRINP1 frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_41QYPSGV +BS_9CA93S6D DDX10--SNORD39/AP003049.2 frameshift DDX10 NA SNORD39 AP003049.2 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_HSHPZAEZ +BS_9DFBHHB5 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_KMHGNCNR +BS_9DFBHHB5 PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_KMHGNCNR +BS_9DZ253JY 7SK--RMRP other 7SK NA RMRP NA NA Oncogene NA NA NA STARFUSION 1 PT_N8W26H19 +BS_9DZ253JY MTSS1--MTSS1 frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_N8W26H19 +BS_9DZ253JY NRXN2--NRXN2 frameshift NRXN2 NA NRXN2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_N8W26H19 +BS_9DZ253JY PPP2R5C--NDUFA3 other PPP2R5C NA NDUFA3 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_N8W26H19 +BS_9DZ253JY RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_N8W26H19 +BS_9F09XV62 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_C2VY5NM6 +BS_9F09XV62 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_C2VY5NM6 +BS_9F09XV62 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_C2VY5NM6 +BS_9F09XV62 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_C2VY5NM6 +BS_9F09XV62 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_C2VY5NM6 +BS_9F09XV62 MICALL2--HIPK2 in-frame MICALL2 NA HIPK2 NA NA Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA ARRIBA 1 PT_C2VY5NM6 +BS_9GJ23RHH KMT2A--MLLT10 in-frame KMT2A NA MLLT10 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_M2J30CF7 +BS_9GJ23RHH MLLT10--AP001267.3 frameshift MLLT10 NA AP001267.3 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M2J30CF7 +BS_9GJ23RHH MLLT10--GDAP1 other MLLT10 NA GDAP1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M2J30CF7 +BS_9GJ23RHH MLLT10--JPH1 frameshift MLLT10 NA JPH1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M2J30CF7 +BS_9GJ23RHH SIK3--MLLT10 in-frame SIK3 NA MLLT10 NA Oncogene, Kinase CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_M2J30CF7 +BS_9M5XJ10G AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_VH6S71AC +BS_9M5XJ10G ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VH6S71AC +BS_9NJHQE9F CDH20--CDH20 frameshift CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_VJZN69T9 +BS_9NZ2D6AD AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9YMRNZHH +BS_9NZ2D6AD CLIP1--CLIP1 other CLIP1 NA CLIP1 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_9YMRNZHH +BS_9NZ2D6AD KNTC1--CLIP1 in-frame KNTC1 NA CLIP1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_9YMRNZHH +BS_9NZ2D6AD MYCN--AC010880.1 frameshift MYCN NA AC010880.1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9YMRNZHH +BS_9NZ2D6AD RPS6KA5--CCDC88C frameshift RPS6KA5 NA CCDC88C NA Kinase NA NA NA NA ARRIBA 1 PT_9YMRNZHH +BS_9Q6Z6VJC CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_M5HDHQNQ +BS_9Q6Z6VJC KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_M5HDHQNQ +BS_9RT63JD9 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AEDWCP8Z +BS_9SJWWYQ4 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_3CVMBGD7 +BS_9SJWWYQ4 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_3CVMBGD7 +BS_9V633J1X AL031686.1--AL031686.1/ZNF334 other AL031686.1 NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_BTTM2HS5 +BS_9V633J1X AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_BTTM2HS5 +BS_9V633J1X MKRN7P--AL031686.1/ZNF334 other MKRN7P NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_BTTM2HS5 +BS_9V633J1X SPRYD7/DLEU2--DLEU2 other SPRYD7 DLEU2 DLEU2 NA NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA ARRIBA 1 PT_BTTM2HS5 +BS_9V633J1X ZNF100--PIP4K2A other ZNF100 NA PIP4K2A NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_BTTM2HS5 +BS_9XVACXP0 AC012358.3--ALK other AC012358.3 NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_387VK1T9 +BS_9XWJ88Q1 ANKH--FOS in-frame ANKH NA FOS NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_DEKWG1QG +BS_9XWJ88Q1 ANKH--FOS other ANKH NA FOS NA NA Oncogene, TranscriptionFactor NA NA NA STARFUSION 1 PT_DEKWG1QG +BS_9XWJ88Q1 ELMO1--EPDR1 frameshift ELMO1 NA EPDR1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DEKWG1QG +BS_9XWJ88Q1 FOS--ANKH frameshift FOS NA ANKH NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DEKWG1QG +BS_A0DYVX9J AL138752.2--VAV2/LINC00094 other AL138752.2 NA VAV2 LINC00094 NA Oncogene NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J AL451164.1--CCND2 other AL451164.1 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_QDGVJKE0 +BS_A0DYVX9J ANKRD52--PRKG1 frameshift ANKRD52 NA PRKG1 NA NA Kinase NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J C9orf135--KDM4C other C9orf135 NA KDM4C NA NA Oncogene NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J CCND2--AL451164.2/AL451164.1 frameshift CCND2 NA AL451164.2 AL451164.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J CCND2-AS1--WDR37 other CCND2-AS1 NA WDR37 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_QDGVJKE0 +BS_A0DYVX9J DENND4C--TEK frameshift DENND4C NA TEK NA NA Oncogene, Kinase NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J ELMO1--AOAH frameshift ELMO1 NA AOAH NA Oncogene NA NA NA NA STARFUSION 1 PT_QDGVJKE0 +BS_A0DYVX9J ERC1--AC069208.1 frameshift ERC1 NA AC069208.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J ERC1--AC069208.1 other ERC1 NA AC069208.1 NA CosmicCensus, Oncogene NA NA NA NA STARFUSION 1 PT_QDGVJKE0 +BS_A0DYVX9J GNAQ--APBA1 frameshift GNAQ NA APBA1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J GNAQ--APBA1 other GNAQ NA APBA1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J KDM4C--RXRA frameshift KDM4C NA RXRA NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J LARP4B--WNK1 other LARP4B NA WNK1 NA CosmicCensus Kinase, Kinase NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J LRMP--AC069208.1 frameshift LRMP NA AC069208.1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J MARCH9--MARS frameshift MARCH9 NA MARS NA NA Oncogene NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J MARCH9--MARS other MARCH9 NA MARS NA NA Oncogene NA NA NA STARFUSION 1 PT_QDGVJKE0 +BS_A0DYVX9J NTNG2--LPAR1 frameshift NTNG2 NA LPAR1 NA NA Oncogene NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J SGMS1--ALOX5 other SGMS1 NA ALOX5 NA TumorSuppressorGene, Oncogene Oncogene NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J TMEFF1--PLPP7/PRRC2B frameshift TMEFF1 NA PLPP7 PRRC2B TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J TMEFF1--PRRC2B frameshift TMEFF1 NA PRRC2B NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J TMEFF1--PRRC2B in-frame TMEFF1 NA PRRC2B NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J TMEFF1--PRRC2B other TMEFF1 NA PRRC2B NA TumorSuppressorGene NA NA NA NA STARFUSION 1 PT_QDGVJKE0 +BS_A0DYVX9J TMEM268--EHMT1 frameshift TMEM268 NA EHMT1 NA NA Oncogene NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J WNK1--LARP4B frameshift WNK1 NA LARP4B NA Kinase, Kinase CosmicCensus NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A0DYVX9J WNK1--PRKG1 frameshift WNK1 NA PRKG1 NA Kinase, Kinase Kinase NA NA NA ARRIBA 1 PT_QDGVJKE0 +BS_A13BMEF5 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_TB8HPJBN +BS_A13BMEF5 MCM9--MCM9 in-frame MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_TB8HPJBN +BS_A14Z8BBK JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_G1QNGVCZ +BS_A14Z8BBK RAB3GAP2--PLCH2 in-frame RAB3GAP2 NA PLCH2 NA NA Oncogene NA NA NA ARRIBA 1 PT_G1QNGVCZ +BS_A14Z8BBK RAB3GAP2--PLCH2 other RAB3GAP2 NA PLCH2 NA NA Oncogene NA NA NA STARFUSION 1 PT_G1QNGVCZ +BS_A1VEGWTR KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_5ABCFCSK +BS_A3QZB9Y2 CHST14--PAWR frameshift CHST14 NA PAWR NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_HT4HJXY6 +BS_A3QZB9Y2 LMO7--RNF219-AS1 frameshift LMO7 NA RNF219-AS1 NA Oncogene NA NA NA NA ARRIBA 1 PT_HT4HJXY6 +BS_A3QZB9Y2 PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_HT4HJXY6 +BS_ABYF92Z9 PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_6MB6RED3 +BS_AD4JPN9Q AC119674.1--CEBPD other AC119674.1 NA CEBPD NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_17W3GJPT +BS_AD4JPN9Q ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_17W3GJPT +BS_AG3D3435 ECT2L--ECT2L frameshift ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_7YSCM82T +BS_AG3D3435 RFX4--RFX4 in-frame RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_7YSCM82T +BS_AG4H9S3J AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_NFDHYPGT +BS_AG4H9S3J ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NFDHYPGT +BS_AG4H9S3J KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_NFDHYPGT +BS_AG4H9S3J KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NFDHYPGT +BS_AGS1HHGF PDZRN3--HMGB1 other PDZRN3 NA HMGB1 NA NA Oncogene NA NA NA ARRIBA 1 PT_HN0AXSZ0 +BS_AGS1HHGF RN7SL2--RMRP other RN7SL2 NA RMRP NA NA Oncogene NA NA NA STARFUSION 1 PT_HN0AXSZ0 +BS_AGTPCRR4 FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_TS0H697Y +BS_AGTPCRR4 NEK5--AC090001.1 other NEK5 NA AC090001.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_TS0H697Y +BS_AGTPCRR4 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_TS0H697Y +BS_AHEFXG7W LTBP1--DDX1/AC008278.1 frameshift LTBP1 NA DDX1 AC008278.1 NA Oncogene NA NA NA ARRIBA 1 PT_VY45XTT7 +BS_AJ6X83G5 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_TRXF649Z +BS_AJ6X83G5 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_TRXF649Z +BS_AJ6X83G5 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_TRXF649Z +BS_AJ6X83G5 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_TRXF649Z +BS_AJ6X83G5 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_TRXF649Z +BS_AJ6X83G5 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_TRXF649Z +BS_AM70R8RG JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_PABK01H0 +BS_AM70R8RG NTRK3--NTRK3 frameshift NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_PABK01H0 +BS_AMQGM1V9 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_J3B812DT +BS_AMQGM1V9 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_J3B812DT +BS_AMQGM1V9 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_J3B812DT +BS_AMQGM1V9 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_J3B812DT +BS_AMQGM1V9 JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_J3B812DT +BS_AMQGM1V9 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_J3B812DT +BS_AMQGM1V9 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_J3B812DT +BS_AMQGM1V9 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_J3B812DT +BS_AMQGM1V9 MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_J3B812DT +BS_AMQGM1V9 NRG1-IT1--NRG1 other NRG1-IT1 NA NRG1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_J3B812DT +BS_AMQGM1V9 PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_J3B812DT +BS_AMZ70B6F NTRK3--NTRK3 frameshift NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_3VQEVNDD +BS_AMZ70B6F POU6F2--POU6F2 frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_3VQEVNDD +BS_AP0SZ364 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PGVQ4XRZ +BS_ARFQ1WG3 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_8GW4J4TD +BS_ARFQ1WG3 MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_8GW4J4TD +BS_AWH9757B AC079015.1--MYBL1 other AC079015.1 NA MYBL1 NA NA Oncogene, TranscriptionFactor, Oncogene NA NA NA ARRIBA 1 PT_59FJRPVX +BS_AWH9757B AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_59FJRPVX +BS_AWH9757B AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_59FJRPVX +BS_AWH9757B AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_59FJRPVX +BS_AWH9757B ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_59FJRPVX +BS_AWH9757B ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_59FJRPVX +BS_AWH9757B KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_59FJRPVX +BS_AWH9757B KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_59FJRPVX +BS_AWH9757B KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_59FJRPVX +BS_AWH9757B MYBL1--AC046195.1 other MYBL1 NA AC046195.1 NA Oncogene, TranscriptionFactor, Oncogene NA NA NA NA ARRIBA 1 PT_59FJRPVX +BS_AWH9757B MYBL1--AC079015.1 frameshift MYBL1 NA AC079015.1 NA Oncogene, TranscriptionFactor, Oncogene NA NA NA NA ARRIBA 1 PT_59FJRPVX +BS_AWH9757B MYBL1--NSMAF/TOX frameshift MYBL1 NA NSMAF TOX Oncogene, TranscriptionFactor, Oncogene NA NA NA NA ARRIBA 1 PT_59FJRPVX +BS_AZN38B7V AES--MIA frameshift AES NA MIA NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_ZCXS29JJ +BS_AZN38B7V AES--SNRPA/MIA/MIA-RAB4B frameshift AES NA SNRPA MIA NA NA NA TumorSuppressorGene NA ARRIBA 1 PT_ZCXS29JJ +BS_AZN38B7V ARHGAP35--SCAPER frameshift ARHGAP35 NA SCAPER NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ZCXS29JJ +BS_AZN38B7V DAPK3--AC008507.1/AC005597.1 frameshift DAPK3 NA AC008507.1 AC005597.1 Kinase, TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_ZCXS29JJ +BS_AZN38B7V DNAJA4--HMG20A frameshift DNAJA4 NA HMG20A NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_ZCXS29JJ +BS_AZN38B7V DNAJA4--HMG20A in-frame DNAJA4 NA HMG20A NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_ZCXS29JJ +BS_AZN38B7V DNAJA4--HMG20A other DNAJA4 NA HMG20A NA NA TranscriptionFactor NA NA NA STARFUSION 1 PT_ZCXS29JJ +BS_AZN38B7V ELF1--LINC00598 other ELF1 NA LINC00598 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ZCXS29JJ +BS_AZN38B7V NECTIN2--SEMA4B frameshift NECTIN2 NA SEMA4B NA NA Oncogene NA NA NA ARRIBA 1 PT_ZCXS29JJ +BS_AZN38B7V NECTIN2--SEMA4B in-frame NECTIN2 NA SEMA4B NA NA Oncogene NA NA NA ARRIBA 1 PT_ZCXS29JJ +BS_AZN38B7V NECTIN2--SEMA4B other NECTIN2 NA SEMA4B NA NA Oncogene NA NA NA STARFUSION 1 PT_ZCXS29JJ +BS_AZN38B7V PTCH1--AL513318.2 frameshift PTCH1 NA AL513318.2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_ZCXS29JJ +BS_AZN38B7V PTCH1--GAS1RR frameshift PTCH1 NA GAS1RR NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_ZCXS29JJ +BS_AZN38B7V RECK--SNRPD3 frameshift RECK NA SNRPD3 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_ZCXS29JJ +BS_AZN38B7V UQCR11--ARHGAP35 other UQCR11 NA ARHGAP35 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_ZCXS29JJ +BS_AZN38B7V ZNF329--TEX9 other ZNF329 NA TEX9 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ZCXS29JJ +BS_AZN38B7V ZNF710--SLCO3A1 other ZNF710 NA SLCO3A1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ZCXS29JJ +BS_AZN38B7V ZNF880--ANKRD24 frameshift ZNF880 NA ANKRD24 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ZCXS29JJ +BS_AZN38B7V ZSCAN1/ZNF135--PIAS1 other ZSCAN1 ZNF135 PIAS1 NA TranscriptionFactor TumorSuppressorGene TranscriptionFactor NA NA ARRIBA 1 PT_ZCXS29JJ +BS_B1C6GZ84 ABCC8--PTH/HMGN2P36 frameshift ABCC8 NA PTH HMGN2P36 NA Oncogene NA NA NA ARRIBA 1 PT_2QZJ4T95 +BS_B1C6GZ84 CHIC2--PDGFRA frameshift CHIC2 NA PDGFRA NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_2QZJ4T95 +BS_B1C6GZ84 CHIC2--PDGFRA in-frame CHIC2 NA PDGFRA NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_2QZJ4T95 +BS_B1C6GZ84 CTNND2--RPS17P11/MFSD4BP1 frameshift CTNND2 NA RPS17P11 MFSD4BP1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_2QZJ4T95 +BS_B1C6GZ84 DEAF1--AP000593.2/AP000593.1 frameshift DEAF1 NA AP000593.2 AP000593.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_2QZJ4T95 +BS_B1C6GZ84 DUSP8--AHNAK frameshift DUSP8 NA AHNAK NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_2QZJ4T95 +BS_B1C6GZ84 EWSR1--AC026477.1/AC108114.1 frameshift EWSR1 NA AC026477.1 AC108114.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_2QZJ4T95 +BS_B1C6GZ84 HIPK3--NELL1 other HIPK3 NA NELL1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_2QZJ4T95 +BS_B1C6GZ84 LRRK2--RNU6-699P/AC104806.2 other LRRK2 NA RNU6-699P AC104806.2 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_2QZJ4T95 +BS_B1C6GZ84 MARK2--CNTN5 frameshift MARK2 NA CNTN5 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_2QZJ4T95 +BS_B1C6GZ84 NRG3--CCND2 frameshift NRG3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2QZJ4T95 +BS_B1C6GZ84 SCFD2--GSX2/RPL22P13 frameshift SCFD2 NA GSX2 RPL22P13 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_2QZJ4T95 +BS_B1C6GZ84 SCFD2--PDGFRA in-frame SCFD2 NA PDGFRA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_2QZJ4T95 +BS_B1C6GZ84 SCFD2--PDGFRA frameshift SCFD2 NA PDGFRA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_2QZJ4T95 +BS_B1C6GZ84 SSBP2--AC010266.2/AC010266.1 frameshift SSBP2 NA AC010266.2 AC010266.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_2QZJ4T95 +BS_B1C6GZ84 TRIO--CDH9 frameshift TRIO NA CDH9 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_2QZJ4T95 +BS_B1HVNV0T CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_FYECBRPP +BS_B1HVNV0T ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_FYECBRPP +BS_B1HVNV0T MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_FYECBRPP +BS_B24PKKQB SEZ6L2--MYH9 frameshift SEZ6L2 NA MYH9 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_596H0BQF +BS_B3M5SGPA 7SK--VIM other 7SK NA VIM NA NA TumorSuppressorGene NA NA NA STARFUSION 1 PT_4XVA57J7 +BS_B3M5SGPA FOCAD--NFIB other FOCAD NA NFIB NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_4XVA57J7 +BS_B3M5SGPA NFIB--FOCAD frameshift NFIB NA FOCAD NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_4XVA57J7 +BS_B3M5SGPA QKI--GPR63 other QKI NA GPR63 NA TumorSuppressorGene, CosmicCensus NA NA NA NA STARFUSION 1 PT_4XVA57J7 +BS_B61168DE ARFGAP1--MAFB frameshift ARFGAP1 NA MAFB NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_1NN9AW39 +BS_B61168DE BMP2--C20orf78/AL135936.1 frameshift BMP2 NA C20orf78 AL135936.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1NN9AW39 +BS_B61168DE INPP4B--GAB1 in-frame INPP4B NA GAB1 NA TumorSuppressorGene Oncogene NA NA NA ARRIBA 1 PT_1NN9AW39 +BS_B61168DE LSM14B--CDH4 other LSM14B NA CDH4 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_1NN9AW39 +BS_B6M763JS RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_QT3MK7BZ +BS_B741RZY9 7SK--RMRP other 7SK NA RMRP NA NA Oncogene NA NA NA STARFUSION 1 PT_ZS2YDFBE +BS_B741RZY9 DNAH9--DNAH9 frameshift DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZS2YDFBE +BS_B741RZY9 ECT2L--ECT2L frameshift ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_ZS2YDFBE +BS_B741RZY9 FBXL13--FBXL13 in-frame FBXL13 NA FBXL13 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_ZS2YDFBE +BS_B741RZY9 LMNTD1--LMNTD1 frameshift LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_ZS2YDFBE +BS_B741RZY9 NEK5--AC090001.1 frameshift NEK5 NA AC090001.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_ZS2YDFBE +BS_B741RZY9 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ZS2YDFBE +BS_B741RZY9 RMRP--RN7SL2 other RMRP NA RN7SL2 NA Oncogene NA NA NA NA STARFUSION 1 PT_ZS2YDFBE +BS_B7QS4DHK POU2F1--POU2F1 in-frame POU2F1 NA POU2F1 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_S4YNE17X +BS_B7QS4DHK SPARC--LTBP4 in-frame SPARC NA LTBP4 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_S4YNE17X +BS_B7X8VXQ3 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_FAD8FQ6S +BS_B8T7M0WV AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_R1N5M7NH +BS_B8T7M0WV ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_R1N5M7NH +BS_B9V8RGTA DHODH--ZNF708 other DHODH NA ZNF708 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_J50NZYZF +BS_B9V8RGTA EWSR1--FLI1 in-frame EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_J50NZYZF +BS_B9V8RGTA EWSR1--FLI1 frameshift EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_J50NZYZF +BS_B9V8RGTA STAG2--AC092266.1/LSINCT5 other STAG2 NA AC092266.1 LSINCT5 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_J50NZYZF +BS_BB0YW800 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XCX9W17B +BS_BB0YW800 RMRP--RN7SL2 other RMRP NA RN7SL2 NA Oncogene NA NA NA NA STARFUSION 1 PT_XCX9W17B +BS_BC936YNZ PID1--BRAF frameshift PID1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_KHX1WQ4H +BS_BC936YNZ PID1--BRAF other PID1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_KHX1WQ4H +BS_BC936YNZ PID1--BRAF in-frame PID1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_KHX1WQ4H +BS_BHR08WGW ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_6TZR2DH1 +BS_BJDNWMJH ERBB4--ERBB4/AC093865.1 frameshift ERBB4 NA ERBB4 AC093865.1 Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_KVFS3Z2Q +BS_BJDNWMJH RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_KVFS3Z2Q +BS_BKQZ550R DNAJC25--ZNF367 frameshift DNAJC25 NA ZNF367 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_41WETNRC +BS_BKQZ550R DNAJC25-GNG10--ZNF367 frameshift DNAJC25-GNG10 NA ZNF367 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_41WETNRC +BS_BKQZ550R TMEFF1--RPSAP49/SPIN1 frameshift TMEFF1 NA RPSAP49 SPIN1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_41WETNRC +BS_BKQZ550R TSC1--MIR4291/AL442224.1 other TSC1 NA MIR4291 AL442224.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_41WETNRC +BS_BKR4E30C AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_E3S6H59E +BS_BKR4E30C AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_E3S6H59E +BS_BKR4E30C CNTN4--CNTN4 in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_E3S6H59E +BS_BKR4E30C ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_E3S6H59E +BS_BKR4E30C KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_E3S6H59E +BS_BKR4E30C KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_E3S6H59E +BS_BKR4E30C KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_E3S6H59E +BS_BKR4E30C WNK3--WNK3 in-frame WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_E3S6H59E +BS_BMMY0H73 ADAM23--AC017048.2 other ADAM23 NA AC017048.2 NA Oncogene NA NA NA NA STARFUSION 1 PT_X5TQR8V2 +BS_BMMY0H73 ADAM23--AC017048.2 frameshift ADAM23 NA AC017048.2 NA Oncogene NA NA NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 ARHGEF2--CCT3 in-frame ARHGEF2 NA CCT3 NA Oncogene NA NA NA TCGAFusion ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 BPTF--CDC42EP4 frameshift BPTF NA CDC42EP4 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 CDK5R1--SOX9-AS1/LINC00511 other CDK5R1 NA SOX9-AS1 LINC00511 Oncogene NA NA NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 CREB1--MAP2 other CREB1 NA MAP2 NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 ENC1--AKAP9 other ENC1 NA AKAP9 NA Oncogene CosmicCensus, Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_X5TQR8V2 +BS_BMMY0H73 GAP43/LSAMP--LSAMP-AS1 other GAP43 LSAMP LSAMP-AS1 NA NA NA TumorSuppressorGene NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 HEXB--AKAP9 other HEXB NA AKAP9 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 MEF2D--AL162591.2/AL162591.1 frameshift MEF2D NA AL162591.2 AL162591.1 Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 MEF2D--ATP8B2/AL162591.2 frameshift MEF2D NA ATP8B2 AL162591.2 Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 NCOR2--LINC02041/SST frameshift NCOR2 NA LINC02041 SST CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 NTRK2--NTRK2 in-frame NTRK2 NA NTRK2 NA Oncogene, Kinase Oncogene, Kinase NA NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 PEX11B--BCL9 other PEX11B NA BCL9 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 PPARD--PHACTR1 in-frame PPARD NA PHACTR1 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 PRCC--ASH1L frameshift PRCC NA ASH1L NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 PRICKLE1--CDH23 other PRICKLE1 NA CDH23 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 PRICKLE1--CDH23-AS1 other PRICKLE1 NA CDH23-AS1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 RAB5B--SARNP other RAB5B NA SARNP NA NA Oncogene NA NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BMMY0H73 TNIK--AL035696.3 frameshift TNIK NA AL035696.3 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_X5TQR8V2 +BS_BN986DF6 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_PFA762TK +BS_BPSTSCBJ KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_ATE3YRH5 +BS_BPWEFR89 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_FN4GEEFR +BS_BPWEFR89 POU6F2--POU6F2 frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_FN4GEEFR +BS_BPWEFR89 USF3--MFSD14B/AL358232.1 other USF3 NA MFSD14B AL358232.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_FN4GEEFR +BS_BSV07M7Z AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_PX4E85V1 +BS_BSV07M7Z JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_PX4E85V1 +BS_BSV07M7Z MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_PX4E85V1 +BS_BSV07M7Z RMRP--7SK other RMRP NA 7SK NA Oncogene NA NA NA NA STARFUSION 1 PT_PX4E85V1 +BS_BSV07M7Z ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_PX4E85V1 +BS_BSV07M7Z ZNF528--ZNF610/ZNF880 frameshift ZNF528 NA ZNF610 ZNF880 TranscriptionFactor TranscriptionFactor NA TranscriptionFactor NA ARRIBA 1 PT_PX4E85V1 +BS_BVSW4GTG AC005324.4--FOXO3 in-frame AC005324.4 NA FOXO3 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_DACV00WF +BS_BVSW4GTG ATXN7--FLNB in-frame ATXN7 NA FLNB NA NA Oncogene NA NA NA ARRIBA 1 PT_DACV00WF +BS_BVSW4GTG ZNF286A--FOXO3 in-frame ZNF286A NA FOXO3 NA TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_DACV00WF +BS_BWBDH9GM AP001978.1/AP001541.1--RSF1 other AP001978.1 AP001541.1 RSF1 NA NA Oncogene NA NA NA ARRIBA 1 PT_JNEV57VK +BS_BWBDH9GM NRG1-IT1--NRG1 other NRG1-IT1 NA NRG1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_JNEV57VK +BS_BWBDH9GM PAX3--AC068489.1/AC009302.1 frameshift PAX3 NA AC068489.1 AC009302.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JNEV57VK +BS_BWBDH9GM RMRP--7SK other RMRP NA 7SK NA Oncogene NA NA NA NA STARFUSION 1 PT_JNEV57VK +BS_BWBDH9GM RSF1--AP001978.1/AP001541.1 frameshift RSF1 NA AP001978.1 AP001541.1 Oncogene NA NA NA NA ARRIBA 1 PT_JNEV57VK +BS_BWBDH9GM TBCEL--SORL1 other TBCEL NA SORL1 NA NA Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_JNEV57VK +BS_BYCX6VK1 SPARC--CHI3L1 frameshift SPARC NA CHI3L1 NA TumorSuppressorGene NA NA NA NA STARFUSION 1 PT_3AWKWXEV +BS_C05FKR8X C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_ZWY04DCR +BS_C3P5BC92 LRMDA--VTI1A frameshift LRMDA NA VTI1A NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_T2M1338J +BS_C3P5BC92 VTI1A--LRMDA in-frame VTI1A NA LRMDA NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_T2M1338J +BS_C41DJZ1F MBOAT2--FBLN2 frameshift MBOAT2 NA FBLN2 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_30H1KV15 +BS_C41DJZ1F UHMK1--AL592295.3/FCGR2A frameshift UHMK1 NA AL592295.3 FCGR2A Kinase NA NA NA NA ARRIBA 1 PT_30H1KV15 +BS_C41DJZ1F ZFX--AL807742.1 frameshift ZFX NA AL807742.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_30H1KV15 +BS_C51RB0YR ADAMTS18--ADAMTS18 in-frame ADAMTS18 NA ADAMTS18 NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_DMMKT7X1 +BS_C51RB0YR ZFHX4--ZFHX4 in-frame ZFHX4 NA ZFHX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_DMMKT7X1 +BS_C6SKJG3N KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_XDV8W16W +BS_C6ZZ3FY5 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_X71D7G5S +BS_C6ZZ3FY5 CAMK2D--AC093840.1/TEMN3-AS1 frameshift CAMK2D NA AC093840.1 TEMN3-AS1 Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_X71D7G5S +BS_C6ZZ3FY5 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_X71D7G5S +BS_C6ZZ3FY5 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_X71D7G5S +BS_C6ZZ3FY5 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_X71D7G5S +BS_C7A2TYAC CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JXGMAHHN +BS_C7A2TYAC KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_JXGMAHHN +BS_C7N3J4NW AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KDW5HHWQ +BS_C7N3J4NW AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KDW5HHWQ +BS_C7N3J4NW ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_KDW5HHWQ +BS_C7N3J4NW FPGT-TNNI3K--FPGT-TNNI3K frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_KDW5HHWQ +BS_C7N3J4NW KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_KDW5HHWQ +BS_C7N3J4NW KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_KDW5HHWQ +BS_C7N3J4NW KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_KDW5HHWQ +BS_C7N3J4NW TNNI3K--TNNI3K frameshift TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_KDW5HHWQ +BS_C83TK159 ATP13A4--FGF12 other ATP13A4 NA FGF12 NA NA Oncogene NA NA NA ARRIBA 1 PT_1AAYYGGY +BS_C83TK159 RFWD2--TNR frameshift RFWD2 NA TNR NA TumorSuppressorGene Oncogene NA NA NA ARRIBA 1 PT_1AAYYGGY +BS_C83TK159 TNR--RFWD2 other TNR NA RFWD2 NA Oncogene TumorSuppressorGene NA NA TCGAFusion ARRIBA 1 PT_1AAYYGGY +BS_CB6VK7PB AL445673.1--PRRX1/MROH9 other AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_JMW6Q6NH +BS_CB6VK7PB CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JMW6Q6NH +BS_CB6VK7PB KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_JMW6Q6NH +BS_CGB2WS2A ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_VJ0M4E8Y +BS_CGB2WS2A KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_VJ0M4E8Y +BS_CQSAJ7BF AL050305.1/AL591501.1--DMD other AL050305.1 AL591501.1 DMD NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_GPQJYAW4 +BS_CQSAJ7BF AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_GPQJYAW4 +BS_CQSAJ7BF AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_GPQJYAW4 +BS_CQSAJ7BF ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GPQJYAW4 +BS_CQSAJ7BF KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_GPQJYAW4 +BS_CQSAJ7BF KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_GPQJYAW4 +BS_CQSAJ7BF KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GPQJYAW4 +BS_CREQ97QC AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_BCN28SW9 +BS_CREQ97QC AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_BCN28SW9 +BS_CREQ97QC CNTN4--CNTN4 in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BCN28SW9 +BS_CREQ97QC CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BCN28SW9 +BS_CREQ97QC ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BCN28SW9 +BS_CREQ97QC FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_BCN28SW9 +BS_CREQ97QC KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_BCN28SW9 +BS_CREQ97QC KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_BCN28SW9 +BS_CREQ97QC KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BCN28SW9 +BS_CTR5X93B RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_XNMKQ4MR +BS_CTR5X93B SRGAP3--RAF1 in-frame SRGAP3 NA RAF1 NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_XNMKQ4MR +BS_CVGFNCBJ AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_CB9PD1YP +BS_CVGFNCBJ ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CB9PD1YP +BS_CVGFNCBJ KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CB9PD1YP +BS_CVGFNCBJ KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CB9PD1YP +BS_CVGFNCBJ KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CB9PD1YP +BS_CVGFNCBJ MYT1L--MYT1L frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_CB9PD1YP +BS_CW9QV8AG ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZZ8SBJJ5 +BS_CW9QV8AG FPGT-TNNI3K--FPGT-TNNI3K frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_ZZ8SBJJ5 +BS_CW9QV8AG JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_ZZ8SBJJ5 +BS_CW9QV8AG KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZZ8SBJJ5 +BS_CXVGG342 CLIP1--ROS1 in-frame CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_2WVW55DA +BS_CXVJK2FY BMP2K--BMP2K frameshift BMP2K NA BMP2K NA Kinase Kinase NA NA NA ARRIBA 1 PT_CYVVA9AB +BS_CXVJK2FY C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_CYVVA9AB +BS_CXVJK2FY CDH10--CDH10 frameshift CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CYVVA9AB +BS_CXVJK2FY NEK10--NEK10 frameshift NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_CYVVA9AB +BS_CZ3ER8DY AL691442.1--RELA/RN7SL309P frameshift AL691442.1 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_ECMZCNTF +BS_CZ3ER8DY C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_ECMZCNTF +BS_CZ3ER8DY EFNA4--RELA/RN7SL309P frameshift EFNA4 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_ECMZCNTF +BS_CZ3ER8DY KDM2A--AP001317.1/AP003038.1 frameshift KDM2A NA AP001317.1 AP003038.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ECMZCNTF +BS_CZ3ER8DY NEK10--NEK10 frameshift NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_ECMZCNTF +BS_CZ3ER8DY PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_ECMZCNTF +BS_CZ3ER8DY RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ECMZCNTF +BS_CZ3NA7KV AAMDC--PRDM11 frameshift AAMDC NA PRDM11 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_B5K3A4F4 +BS_CZ3NA7KV ARHGAP1--MAP4K2 other ARHGAP1 NA MAP4K2 NA NA Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_B5K3A4F4 +BS_CZ3NA7KV C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_B5K3A4F4 +BS_CZ3NA7KV MEN1--AC015771.1/Y_RNA frameshift MEN1 NA AC015771.1 Y_RNA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_B5K3A4F4 +BS_CZ3NA7KV MTOR--MTOR in-frame MTOR NA MTOR NA CosmicCensus, Oncogene, Kinase CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_B5K3A4F4 +BS_CZ3NA7KV RTN3--ATM frameshift RTN3 NA ATM NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_B5K3A4F4 +BS_CZ3NA7KV SLC1A2--EIF3F other SLC1A2 NA EIF3F NA NA TumorSuppressorGene, Oncogene NA NA NA STARFUSION 1 PT_B5K3A4F4 +BS_CZ3NA7KV TRPM7--TRPM7 in-frame TRPM7 NA TRPM7 NA Kinase Kinase NA NA NA ARRIBA 1 PT_B5K3A4F4 +BS_CZ82ANWP AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_868QRW9G +BS_CZ82ANWP AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_868QRW9G +BS_CZ82ANWP CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_868QRW9G +BS_CZ82ANWP DNAH7--DNAH7/STK17B frameshift DNAH7 NA DNAH7 STK17B NA NA NA Kinase NA ARRIBA 1 PT_868QRW9G +BS_CZ82ANWP ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_868QRW9G +BS_CZ82ANWP KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_868QRW9G +BS_CZ82ANWP KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_868QRW9G +BS_CZ82ANWP KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_868QRW9G +BS_D0BGESQF ROBO2--FRY in-frame ROBO2 NA FRY NA CosmicCensus NA NA NA NA ARRIBA 1 PT_ZN1F7RMP +BS_D0BGESQF RRAS2--AC018523.2 frameshift RRAS2 NA AC018523.2 NA Oncogene NA NA NA NA ARRIBA 1 PT_ZN1F7RMP +BS_D144EJRQ MDM2--CARD8 frameshift MDM2 NA CARD8 NA CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_V8714N9H +BS_D144EJRQ RALYL--PVT1/MIR1208 frameshift RALYL NA PVT1 MIR1208 NA Oncogene NA NA NA ARRIBA 1 PT_V8714N9H +BS_D144EJRQ RALYL--PVT1/MIR1208 other RALYL NA PVT1 MIR1208 NA Oncogene NA NA NA ARRIBA 1 PT_V8714N9H +BS_D29RPBSZ TANC2--CDH13 frameshift TANC2 NA CDH13 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_JNEV57VK +BS_D2K9C7XR CDH10--CDH10 frameshift CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_N673SYWW +BS_D2K9C7XR CDH20--CDH20 frameshift CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_N673SYWW +BS_D2K9C7XR COBL--ZNF445 frameshift COBL NA ZNF445 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_N673SYWW +BS_D2K9C7XR COBL--ZNF852 in-frame COBL NA ZNF852 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_N673SYWW +BS_D2K9C7XR ELF2--AC079380.1 other ELF2 NA AC079380.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_N673SYWW +BS_D2K9C7XR ELF2--AC079380.1/PABPC4L other ELF2 NA AC079380.1 PABPC4L TranscriptionFactor NA NA NA NA ARRIBA 1 PT_N673SYWW +BS_D3YBV7KB GOPC--ROS1 in-frame GOPC NA ROS1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_NPPBNRVV +BS_D3YBV7KB LINC01019--LINC01019/IRX1 other LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA ARRIBA 1 PT_NPPBNRVV +BS_D8N31T39 CLIP1--ROS1 in-frame CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_2WVW55DA +BS_D9GEXXHX DACT1--AKAP6 frameshift DACT1 NA AKAP6 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_AQWDQW27 +BS_D9GEXXHX FAM118B--YAP1/AP000942.1 other FAM118B NA YAP1 AP000942.1 NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_AQWDQW27 +BS_D9GEXXHX FBXL7--CDH4 in-frame FBXL7 NA CDH4 NA Oncogene TumorSuppressorGene NA NA NA ARRIBA 1 PT_AQWDQW27 +BS_D9GEXXHX PKNOX2--AP003086.2 other PKNOX2 NA AP003086.2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_AQWDQW27 +BS_D9GEXXHX YAP1--FAM118B in-frame YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_AQWDQW27 +BS_D9GEXXHX YAP1--FAM118B other YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA STARFUSION 1 PT_AQWDQW27 +BS_DBDXCXT5 TFAP4/GLIS2--SH3GLB2 other TFAP4 GLIS2 SH3GLB2 NA Oncogene, TranscriptionFactor NA TranscriptionFactor NA NA ARRIBA 1 PT_HFQNKP5X +BS_DFGS950G ELMO1--AOAH frameshift ELMO1 NA AOAH NA Oncogene NA NA NA NA STARFUSION 1 PT_JJ8QNAM8 +BS_DFGS950G ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_JJ8QNAM8 +BS_DFWFBYSN ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RJ98S3KZ +BS_DGTPWJ59 AC122707.1--AC122707.1/RNF180 other AC122707.1 NA AC122707.1 RNF180 NA NA NA TumorSuppressorGene NA ARRIBA 1 PT_X8SK8120 +BS_DGTPWJ59 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_X8SK8120 +BS_DGTPWJ59 RN7SL165P/ZDHHC18--ALG3 other RN7SL165P ZDHHC18 ALG3 NA NA NA Oncogene NA NA ARRIBA 1 PT_X8SK8120 +BS_DHA5FMVW SMAD4/AC090330.1--LINC01630 other SMAD4 AC090330.1 LINC01630 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ND34A6PR +BS_DMZP9G1H AC013652.1--THBS1 other AC013652.1 NA THBS1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_2ZXR2PDN +BS_DMZP9G1H AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_2ZXR2PDN +BS_DMZP9G1H AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_2ZXR2PDN +BS_DMZP9G1H CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2ZXR2PDN +BS_DMZP9G1H ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2ZXR2PDN +BS_DMZP9G1H KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_2ZXR2PDN +BS_DMZP9G1H KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_2ZXR2PDN +BS_DMZP9G1H KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2ZXR2PDN +BS_DMZP9G1H THADA--THADA in-frame THADA NA THADA NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2ZXR2PDN +BS_DPF1CX0G DST--USP24 in-frame DST NA USP24 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZVV78QP5 +BS_DPF1CX0G KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_ZVV78QP5 +BS_DPF1CX0G SNHG14--B2M other SNHG14 NA B2M NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_ZVV78QP5 +BS_DRD9QXR5 MYT1L--MYT1L frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_MQHST8YC +BS_DRD9QXR5 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_MQHST8YC +BS_DRY58DTF CIC--AC011466.3 frameshift CIC NA AC011466.3 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4PJA6KT +BS_DRY58DTF MEGF8--AL121832.1/GATA5 frameshift MEGF8 NA AL121832.1 GATA5 NA NA NA TumorSuppressorGene, TranscriptionFactor NA ARRIBA 1 PT_Z4PJA6KT +BS_DS438CXE RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_0DXHDZJR +BS_DSS3S5XD CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_SDK91A16 +BS_DSS3S5XD KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_SDK91A16 +BS_DSS3S5XD LINC01019--LINC01019/IRX1 other LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA ARRIBA 1 PT_SDK91A16 +BS_DV86M0Y7 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2Z7GVDTM +BS_DV86M0Y7 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_2Z7GVDTM +BS_DV86M0Y7 ZSCAN9/ZKSCAN4--ZSCAN9 other ZSCAN9 ZKSCAN4 ZSCAN9 NA TranscriptionFactor TranscriptionFactor TranscriptionFactor NA NA ARRIBA 1 PT_2Z7GVDTM +BS_DVCQ8XDZ AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_0RN3VSXZ +BS_DVCQ8XDZ AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_0RN3VSXZ +BS_DVCQ8XDZ ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0RN3VSXZ +BS_DVCQ8XDZ KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_0RN3VSXZ +BS_DVCQ8XDZ KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_0RN3VSXZ +BS_DVCQ8XDZ KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0RN3VSXZ +BS_DVCQ8XDZ POU6F2--POU6F2 frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_0RN3VSXZ +BS_DVCQ8XDZ UNC79--UNC79 frameshift UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0RN3VSXZ +BS_E1CGF3KV CDC5L--MYB in-frame CDC5L NA MYB NA TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_2PRV78FX +BS_E3BAT4C1 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_F3S9PB94 +BS_E3BAT4C1 PRKCE--PRAG1 frameshift PRKCE NA PRAG1 NA TumorSuppressorGene, Kinase Kinase NA NA NA ARRIBA 1 PT_F3S9PB94 +BS_E4F1D721 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_1DY2TP9N +BS_E4GC9EXR ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_W6AWJJK7 +BS_E4QK839R CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_VZTTTP3Q +BS_E4QK839R ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_VZTTTP3Q +BS_E60JZ9Z3 AC058791.1/LINC-PINT--MET other AC058791.1 LINC-PINT MET NA NA Kinase, CosmicCensus, Oncogene, Kinase TumorSuppressorGene NA NA ARRIBA 1 PT_Z4PJA6KT +BS_E60JZ9Z3 LINC-PINT--MET other LINC-PINT NA MET NA TumorSuppressorGene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_Z4PJA6KT +BS_E60JZ9Z3 ST7--AC007036.1/ZNRF2 frameshift ST7 NA AC007036.1 ZNRF2 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_Z4PJA6KT +BS_E94QRJDW BRAF--RNF130 frameshift BRAF NA RNF130 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_20ZM6THA +BS_EBMCTR80 AP001979.2--OPCML other AP001979.2 NA OPCML NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_8R00BMHH +BS_EBMCTR80 RCN2--EMP1 frameshift RCN2 NA EMP1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_8R00BMHH +BS_EF775B3K ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XNTFM9XY +BS_EF775B3K GAB1--SYK in-frame GAB1 NA SYK NA Oncogene Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_XNTFM9XY +BS_EF775B3K RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_XNTFM9XY +BS_EFE4YEK3 AC092691.1--LSAMP/RNU6-1200P other AC092691.1 NA LSAMP RNU6-1200P NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_RH59ET3M +BS_EFE4YEK3 ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RH59ET3M +BS_EFEZB0ZH CSMD1--MAP4 in-frame CSMD1 NA MAP4 NA TumorSuppressorGene Oncogene NA NA NA ARRIBA 1 PT_DW6V5V8E +BS_EFEZB0ZH KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_DW6V5V8E +BS_EHVYJAVA FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_GHHY5AAE +BS_EHVYJAVA MCM9--MCM9 in-frame MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_GHHY5AAE +BS_EHVYJAVA RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_GHHY5AAE +BS_EJ9JKM1C DENND1A--TFAP4 frameshift DENND1A NA TFAP4 NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_HFQNKP5X +BS_EJ9JKM1C TFAP4/GLIS2--SH3GLB2 other TFAP4 GLIS2 SH3GLB2 NA Oncogene, TranscriptionFactor NA TranscriptionFactor NA NA ARRIBA 1 PT_HFQNKP5X +BS_EJ9JKM1C TTF1--NUP188 other TTF1 NA NUP188 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_HFQNKP5X +BS_EJ9JKM1C VTI1A--CHST15/OAT frameshift VTI1A NA CHST15 OAT CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_HFQNKP5X +BS_EK5PCKY0 C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_GFTCNWQ0 +BS_EK5PCKY0 DNAH9--DNAH9 frameshift DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GFTCNWQ0 +BS_EK5PCKY0 IFT88--IFT88 in-frame IFT88 NA IFT88 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_GFTCNWQ0 +BS_EK5PCKY0 NEK10--NEK10 frameshift NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_GFTCNWQ0 +BS_EK5PCKY0 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_GFTCNWQ0 +BS_EK5PCKY0 RNU6-2--RMRP other RNU6-2 NA RMRP NA NA Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_GFTCNWQ0 +BS_EK5PCKY0 TAOK1--TAOK1 frameshift TAOK1 NA TAOK1 NA Kinase Kinase NA NA NA ARRIBA 1 PT_GFTCNWQ0 +BS_EK5PCKY0 TP53BP1--TP53BP1 in-frame TP53BP1 NA TP53BP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_GFTCNWQ0 +BS_EMMF4PZX FRYL--TMEM165 other FRYL NA TMEM165 NA Oncogene NA NA NA NA ARRIBA 1 PT_BZKJR4GK +BS_EMMF4PZX TMEM165--FRYL frameshift TMEM165 NA FRYL NA NA Oncogene NA NA NA ARRIBA 1 PT_BZKJR4GK +BS_EN2VK7NY KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_Y572BRC1 +BS_ERJAJ0KA AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DXF7ZZQZ +BS_ERJAJ0KA AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DXF7ZZQZ +BS_ERJAJ0KA ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DXF7ZZQZ +BS_ERJAJ0KA FAM135B--FAM135B in-frame FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_DXF7ZZQZ +BS_ERJAJ0KA KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DXF7ZZQZ +BS_ERJAJ0KA KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DXF7ZZQZ +BS_ERJAJ0KA KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DXF7ZZQZ +BS_ERJAJ0KA MYB--MMP16 frameshift MYB NA MMP16 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_DXF7ZZQZ +BS_ERJAJ0KA RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_DXF7ZZQZ +BS_ERWT0ZWE AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_7BJBEBZT +BS_ERWT0ZWE CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_7BJBEBZT +BS_ERWT0ZWE ELL--ZFP28 in-frame ELL NA ZFP28 NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_7BJBEBZT +BS_ERWT0ZWE ELL--ZFP28 frameshift ELL NA ZFP28 NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_7BJBEBZT +BS_ERWT0ZWE FEZF2--FEZF2/CADPS other FEZF2 NA FEZF2 CADPS TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_7BJBEBZT +BS_ERWT0ZWE JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_7BJBEBZT +BS_ERWT0ZWE NDST4--NDST4 frameshift NDST4 NA NDST4 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_7BJBEBZT +BS_ERWT0ZWE NEK10--NEK10 frameshift NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_7BJBEBZT +BS_ERWT0ZWE ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_7BJBEBZT +BS_ERWT0ZWE USH2A--USH2A/ESRRG frameshift USH2A NA USH2A ESRRG NA NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_7BJBEBZT +BS_ET8CJXSF KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_VGXHFMND +BS_ET8CJXSF RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VGXHFMND +BS_ET8CJXSF ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VGXHFMND +BS_EXGBH3TD AL445673.1--PRRX1/MROH9 other AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_T1FV709B +BS_EZ3147MX BTRC--ADARB2 frameshift BTRC NA ADARB2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_KAQMYFYB +BS_EZ3147MX BTRC--LRRC20 frameshift BTRC NA LRRC20 NA Oncogene NA NA NA NA ARRIBA 1 PT_KAQMYFYB +BS_EZ3147MX BTRC--NPFFR1 frameshift BTRC NA NPFFR1 NA Oncogene NA NA NA NA ARRIBA 1 PT_KAQMYFYB +BS_EZ3147MX FRMD4A--ZMIZ1 frameshift FRMD4A NA ZMIZ1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KAQMYFYB +BS_EZ3147MX LRRC20--ADARB2 other LRRC20 NA ADARB2 NA NA Oncogene NA NA NA ARRIBA 1 PT_KAQMYFYB +BS_EZ3147MX REV3L--FYN frameshift REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_KAQMYFYB +BS_EZ3147MX REV3L--FYN in-frame REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_KAQMYFYB +BS_EZ3147MX ZMIZ1--CHST15/OAT other ZMIZ1 NA CHST15 OAT Oncogene NA NA NA NA ARRIBA 1 PT_KAQMYFYB +BS_F0JB4EAK ABCC1--WWOX in-frame ABCC1 NA WWOX NA Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_KBFM551M +BS_F0JB4EAK AKT1--EFS frameshift AKT1 NA EFS NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_KBFM551M +BS_F0JB4EAK CDC42BPB--CDCA4 frameshift CDC42BPB NA CDCA4 NA Kinase NA NA NA NA ARRIBA 1 PT_KBFM551M +BS_F0JB4EAK CRIP2--TRAV41 other CRIP2 NA TRAV41 NA Oncogene NA NA NA NA STARFUSION 1 PT_KBFM551M +BS_F0JB4EAK CRIP2--TRAV41 frameshift CRIP2 NA TRAV41 NA Oncogene NA NA NA NA ARRIBA 1 PT_KBFM551M +BS_F0JB4EAK CRIP2--TRAV41/AC244502.2 frameshift CRIP2 NA TRAV41 AC244502.2 Oncogene NA NA NA NA ARRIBA 1 PT_KBFM551M +BS_F6V1Y4QS GOPC--ROS1 in-frame GOPC NA ROS1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_Z7YJ7MSM +BS_F6V1Y4QS SASH1--LINC02067 frameshift SASH1 NA LINC02067 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_Z7YJ7MSM +BS_F6Z5HFWH RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_JN3S17B3 +BS_F8N6CFQE AF127577.4--NRIP1 other AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA ARRIBA 1 PT_EZEMVRVT +BS_F8N6CFQE CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_EZEMVRVT +BS_F8N6CFQE KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_EZEMVRVT +BS_F8N6CFQE MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_EZEMVRVT +BS_FAQQ0GCQ ABCC5--CADM2 frameshift ABCC5 NA CADM2 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ AC132008.2--THRB other AC132008.2 NA THRB NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ ACAD11--CSTA frameshift ACAD11 NA CSTA NA NA Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ AGTR1--AC068633.1/IGSF11 other AGTR1 NA AC068633.1 IGSF11 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ ARL6IP5--AC137630.1 frameshift ARL6IP5 NA AC137630.1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ ARL6IP5--AC137630.4 frameshift ARL6IP5 NA AC137630.4 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ ARL6IP5--ARIH2 frameshift ARL6IP5 NA ARIH2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ ATP5G1P3/LINC01391--MYLK other ATP5G1P3 LINC01391 MYLK NA NA Kinase NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ ATXN7--CACNA2D3 frameshift ATXN7 NA CACNA2D3 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ CACNA2D3--AC129807.1 frameshift CACNA2D3 NA AC129807.1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ CACNA2D3--AC132008.2 frameshift CACNA2D3 NA AC132008.2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ CACNA2D3--ATXN7 frameshift CACNA2D3 NA ATXN7 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ CACNA2D3--LINC02008 frameshift CACNA2D3 NA LINC02008 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ CAMKV--SPSB4 other CAMKV NA SPSB4 NA Kinase NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ CCDC66--ULK4 frameshift CCDC66 NA ULK4 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ COMMD2--CBLB frameshift COMMD2 NA CBLB NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ DIRC2--LRRC3B frameshift DIRC2 NA LRRC3B NA Oncogene TumorSuppressorGene NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ ERC2--ATP1B3 in-frame ERC2 NA ATP1B3 NA Oncogene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ FGF12--MME frameshift FGF12 NA MME NA Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ FOXP1--LINC02006 other FOXP1 NA LINC02006 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ HLTF--LINC01983 frameshift HLTF NA LINC01983 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ LRCH3--FANCD2 frameshift LRCH3 NA FANCD2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ LRIG1--FYTTD1 in-frame LRIG1 NA FYTTD1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ MGLL--ERC2 frameshift MGLL NA ERC2 NA NA Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ PTPRG--ATP13A4 in-frame PTPRG NA ATP13A4 NA Oncogene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ PTPRG--OSBPL10 in-frame PTPRG NA OSBPL10 NA Oncogene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ PTPRG--OSBPL10 frameshift PTPRG NA OSBPL10 NA Oncogene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ RAF1--AC117434.1/MIR7977 other RAF1 NA AC117434.1 MIR7977 Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ RBMS3--AC068633.1/IGSF11 frameshift RBMS3 NA AC068633.1 IGSF11 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ RNF13--CNTN4 frameshift RNF13 NA CNTN4 NA NA Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ SETD2--ROBO1 frameshift SETD2 NA ROBO1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ SLC4A7--ST6GAL1 frameshift SLC4A7 NA ST6GAL1 NA NA Oncogene NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ SLMAP--KALRN in-frame SLMAP NA KALRN NA NA Kinase NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ SRGAP3--TM4SF18 in-frame SRGAP3 NA TM4SF18 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ SRGAP3--TM4SF18 frameshift SRGAP3 NA TM4SF18 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ TBL1XR1--CCDC191 other TBL1XR1 NA CCDC191 NA CosmicCensus NA NA NA NA ARRIBA, STARFUSION 2 PT_EPFX7V9H +BS_FAQQ0GCQ TMEM108--EPHA6 other TMEM108 NA EPHA6 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ UBA3--ROBO2 frameshift UBA3 NA ROBO2 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAQQ0GCQ ZNF148--NFKBIZ/LINC02085 frameshift ZNF148 NA NFKBIZ LINC02085 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_EPFX7V9H +BS_FAVRBEW7 NEK5--AC090001.1 frameshift NEK5 NA AC090001.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_WYVMWYVA +BS_FAVRBEW7 NRG1-IT1--NRG1 other NRG1-IT1 NA NRG1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_WYVMWYVA +BS_FAVRBEW7 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_WYVMWYVA +BS_FAVRBEW7 SLC9A8--ABCB5 frameshift SLC9A8 NA ABCB5 NA NA Oncogene NA NA NA ARRIBA 1 PT_WYVMWYVA +BS_FBJ5Q54N BMI1--RNU6-413P/ARMC3 frameshift BMI1 NA RNU6-413P ARMC3 Oncogene NA NA NA NA ARRIBA 1 PT_FMK5VFYW +BS_FCAKKZ20 AKAP13--THADA frameshift AKAP13 NA THADA NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_FCAKKZ20 GPM6B--SRPX in-frame GPM6B NA SRPX NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_FCAKKZ20 NTRK3--PHF14 frameshift NTRK3 NA PHF14 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_FCAKKZ20 PHF12--GAS7 frameshift PHF12 NA GAS7 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_FCAKKZ20 THADA--AL445687.2/RNU6-716P frameshift THADA NA AL445687.2 RNU6-716P Oncogene NA NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_FCAKKZ20 TXLNG--ERAS frameshift TXLNG NA ERAS NA NA Oncogene NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_FCAKKZ20 ZNF81--AC091808.1/MIR3937 frameshift ZNF81 NA AC091808.1 MIR3937 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_FCDAH728 AC103718.1--PVT1 other AC103718.1 NA PVT1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KZ56XHJT +BS_FCDAH728 CACNA1E--GAS5 frameshift CACNA1E NA GAS5 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_KZ56XHJT +BS_FCDAH728 SDCBP--MKL1 frameshift SDCBP NA MKL1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KZ56XHJT +BS_FEPRNEXX ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_00G007DM +BS_FEPRNEXX FUT8/AL391261.1--FUT8 other FUT8 AL391261.1 FUT8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_00G007DM +BS_FEPRNEXX HIVEP1--HIVEP1 in-frame HIVEP1 NA HIVEP1 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_00G007DM +BS_FEPRNEXX MTSS1--MTSS1 frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_00G007DM +BS_FEPRNEXX MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_00G007DM +BS_FEPRNEXX PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_00G007DM +BS_FEPRNEXX ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_00G007DM +BS_FJWZ3M7V KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_X1PRY0FC +BS_FJZPQZ2C ACVR1--ACVR1 frameshift ACVR1 NA ACVR1 NA CosmicCensus, Kinase CosmicCensus, Kinase NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_FJZPQZ2C AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_FJZPQZ2C AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_FJZPQZ2C ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_FJZPQZ2C FAM135B--FAM135B in-frame FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_FJZPQZ2C KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_FJZPQZ2C KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_FJZPQZ2C KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_FJZPQZ2C UNC79--UNC79 frameshift UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3T3VGWC6 +BS_FKDQJJB5 MYC--CASC8 other MYC NA CASC8 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_YFS3AWC0 +BS_FKDQJJB5 PVT1--CASC8 other PVT1 NA CASC8 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_YFS3AWC0 +BS_FKDQJJB5 PVT1--PCAT1 other PVT1 NA PCAT1 NA Oncogene NA NA NA NA ARRIBA 1 PT_YFS3AWC0 +BS_FKDQJJB5 ROR1--DNAJC6 in-frame ROR1 NA DNAJC6 NA Kinase, Kinase Oncogene NA NA NA ARRIBA 1 PT_YFS3AWC0 +BS_FKDQJJB5 STAT3--CCDC57 frameshift STAT3 NA CCDC57 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_YFS3AWC0 +BS_FKDQJJB5 STAT3--CD36 frameshift STAT3 NA CD36 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_YFS3AWC0 +BS_FRM9TG02 NCOR2--SCARB1 in-frame NCOR2 NA SCARB1 NA CosmicCensus, Oncogene Oncogene NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_3P3D97AB +BS_FRM9TG02 RMRP--RN7SL2 other RMRP NA RN7SL2 NA Oncogene NA NA NA NA STARFUSION 1 PT_3P3D97AB +BS_FTKPQ5FZ C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_VR8T8JX8 +BS_FW5ECXXK AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3C6QA9MA +BS_FW5ECXXK AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3C6QA9MA +BS_FW5ECXXK ARL2-SNX15--MACROD1 frameshift ARL2-SNX15 NA MACROD1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3C6QA9MA +BS_FW5ECXXK C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_3C6QA9MA +BS_FW5ECXXK EED--ADGRB3 in-frame EED NA ADGRB3 NA TumorSuppressorGene, CosmicCensus NA NA NA NA ARRIBA 1 PT_3C6QA9MA +BS_FW5ECXXK ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3C6QA9MA +BS_FW5ECXXK KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_3C6QA9MA +BS_FW5ECXXK KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_3C6QA9MA +BS_FW5ECXXK KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3C6QA9MA +BS_FW5ECXXK SNX15--MACROD1 frameshift SNX15 NA MACROD1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3C6QA9MA +BS_FWMJPKCV ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_7VPSS2SN +BS_FWMJPKCV CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_7VPSS2SN +BS_FWMJPKCV MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_7VPSS2SN +BS_FYRDYBMZ FRMPD1--AL157937.1/DMRTA1 other FRMPD1 NA AL157937.1 DMRTA1 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_ARCM3PXM +BS_FYRDYBMZ MTAP--AL445487.1/RAD23B frameshift MTAP NA AL445487.1 RAD23B TumorSuppressorGene NA NA TumorSuppressorGene, Oncogene NA ARRIBA 1 PT_ARCM3PXM +BS_FYRDYBMZ PREX1--SCD5 frameshift PREX1 NA SCD5 NA Oncogene NA NA NA NA ARRIBA 1 PT_ARCM3PXM +BS_FYRDYBMZ RAD23B--AL157937.1/DMRTA1 frameshift RAD23B NA AL157937.1 DMRTA1 TumorSuppressorGene, Oncogene NA NA TranscriptionFactor NA ARRIBA 1 PT_ARCM3PXM +BS_G00FHF3Q AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_TKWTTRQ7 +BS_G00FHF3Q JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_TKWTTRQ7 +BS_G1Y281HX CTDSP1--CFLAR frameshift CTDSP1 NA CFLAR NA NA Oncogene NA NA NA ARRIBA 1 PT_P1290MMP +BS_G1Y281HX ZEB2--ARHGAP15 in-frame ZEB2 NA ARHGAP15 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_P1290MMP +BS_G23JJAZY ABTB2--AP002791.1/AP003028.1 frameshift ABTB2 NA AP002791.1 AP003028.1 Oncogene NA NA NA NA ARRIBA 1 PT_23K3YS1P +BS_G23JJAZY C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_23K3YS1P +BS_G23JJAZY C11orf95--RELA other C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA STARFUSION 1 PT_23K3YS1P +BS_G23JJAZY NUDT8--LTBP3 other NUDT8 NA LTBP3 NA NA Oncogene NA NA NA ARRIBA 1 PT_23K3YS1P +BS_G23JJAZY ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_23K3YS1P +BS_G3RJTBZD AC092920.1/MTND5P15--TBL1XR1 other AC092920.1 MTND5P15 TBL1XR1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_3CHB9PK5 +BS_G3RJTBZD ARID1B--LDB2 frameshift ARID1B NA LDB2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_3CHB9PK5 +BS_G63HYD6N AL031686.1--AL031686.1/ZNF334 other AL031686.1 NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N AP000721.2--KAT5 other AP000721.2 NA KAT5 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N AP000721.2--RELA/RN7SL309P other AP000721.2 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N AP003419.2--RELA other AP003419.2 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N ARHGEF10--ARHGEF10 frameshift ARHGEF10 NA ARHGEF10 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N ARHGEF10--KBTBD11-OT1 frameshift ARHGEF10 NA KBTBD11-OT1 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N ARHGEF10--KBTBD11-OT1 in-frame ARHGEF10 NA KBTBD11-OT1 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_PKP1250P +BS_G63HYD6N CLCF1--RELA other CLCF1 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N CNTRL--CNTRL frameshift CNTRL NA CNTRL NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N KBTBD11-OT1--ARHGEF10 in-frame KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N KBTBD11-OT1--ARHGEF10 frameshift KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N KBTBD11-OT1--ARHGEF10 other KBTBD11-OT1 NA ARHGEF10 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N MKRN7P--AL031686.1/ZNF334 other MKRN7P NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N NUP214--NUP214 in-frame NUP214 NA NUP214 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PKP1250P +BS_G63HYD6N RAD9A--RELA other RAD9A NA RELA NA Oncogene Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_PKP1250P +BS_G7AGNB5G MCM9--MCM9 in-frame MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_EYHJQQ8E +BS_G9XE3N9T CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2VSDT9CK +BS_G9XE3N9T ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2VSDT9CK +BS_G9XE3N9T RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_2VSDT9CK +BS_GCA4GET3 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_6TKJRSPW +BS_GCQFGDTX AC100757.2--NBEA other AC100757.2 NA NBEA NA NA CosmicCensus NA NA NA ARRIBA 1 PT_PJSV0X4X +BS_GCQFGDTX EVI5--ZIC1 other EVI5 NA ZIC1 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_PJSV0X4X +BS_GCQFGDTX NBEAP1--AC127381.2/BCAR1P1 other NBEAP1 NA AC127381.2 BCAR1P1 Oncogene NA NA NA NA ARRIBA 1 PT_PJSV0X4X +BS_GCQFGDTX ZIC1--EVI5 other ZIC1 NA EVI5 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_PJSV0X4X +BS_GDHH6T5A CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_K8ZV7APT +BS_GE2RVZE6 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_TKWTTRQ7 +BS_GE2RVZE6 BRIP1--BRIP1 in-frame BRIP1 NA BRIP1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_TKWTTRQ7 +BS_GE2RVZE6 JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_TKWTTRQ7 +BS_GE2RVZE6 NTRK3--SDCBP2-AS1 other NTRK3 NA SDCBP2-AS1 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_TKWTTRQ7 +BS_GG9W3J9Y NTRK3--NTRK3 frameshift NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_J5NSRW1Y +BS_GHNJ4CYC KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_1J2DT6MM +BS_GMDQK06Q CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_FAQWD7GX +BS_GMDQK06Q RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_FAQWD7GX +BS_GNV89A5P AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_45P9F9MD +BS_GR46VD0Q AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_S4YNE17X +BS_GS1KR5PK AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_CXT81GRM +BS_GSVCN2XC RNU6-25P--RMRP other RNU6-25P NA RMRP NA NA Oncogene NA NA NA ARRIBA 1 PT_YZ8A8A36 +BS_GW0GKWMS AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_P2NGYMG5 +BS_GW0GKWMS ARAP2--PCDH7 frameshift ARAP2 NA PCDH7 NA Oncogene NA NA NA NA ARRIBA 1 PT_P2NGYMG5 +BS_GW0GKWMS HPSE--CCDC91/AC022081.1 frameshift HPSE NA CCDC91 AC022081.1 Oncogene NA NA NA NA ARRIBA 1 PT_P2NGYMG5 +BS_GW0GKWMS PTPRZ1--ARAP2 frameshift PTPRZ1 NA ARAP2 NA NA Oncogene NA NA NA ARRIBA 1 PT_P2NGYMG5 +BS_GWCRMKE6 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_D5KHK0SS +BS_GWSJ4Z9H AKAP13--SH3GL3 other AKAP13 NA SH3GL3 NA Oncogene NA NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H BOP1--ILF2 frameshift BOP1 NA ILF2 NA Oncogene NA NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H C3orf70--RAB7A frameshift C3orf70 NA RAB7A NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H CHIC2--AC098868.1 frameshift CHIC2 NA AC098868.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H GLIS3--RFX3 other GLIS3 NA RFX3 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H KDR--AC092546.1 frameshift KDR NA AC092546.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H KDR--AC098587.1 frameshift KDR NA AC098587.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H KDR--AC124017.1 frameshift KDR NA AC124017.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H KDR--LINC02283 frameshift KDR NA LINC02283 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H KDR--LNX1 frameshift KDR NA LNX1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H KDR--NMU frameshift KDR NA NMU NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H KIT--KDR in-frame KIT NA KDR NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H KLF6--LINC01994 frameshift KLF6 NA LINC01994 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H MET--UBE2L3 in-frame MET NA UBE2L3 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H NRCAM--CDK14 other NRCAM NA CDK14 NA TumorSuppressorGene, Oncogene Kinase NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H RAB11FIP3--ATF7IP frameshift RAB11FIP3 NA ATF7IP NA NA Oncogene NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H RSRP1--RPTOR other RSRP1 NA RPTOR NA Oncogene NA NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H ST7--FOXL2NB/PRR23A frameshift ST7 NA FOXL2NB PRR23A TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H ST8SIA2--PIK3C2G frameshift ST8SIA2 NA PIK3C2G NA NA Kinase NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H STAG1--APOD/MUC20P1 frameshift STAG1 NA APOD MUC20P1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H STX1A--CALCR frameshift STX1A NA CALCR NA NA Oncogene NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H TMEM33--KIT frameshift TMEM33 NA KIT NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GWSJ4Z9H UBE2L3--MET in-frame UBE2L3 NA MET NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_9GKVQ9QS +BS_GXTFW99H ACO2--MKL1 frameshift ACO2 NA MKL1 NA NA Oncogene NA NA NA ARRIBA 1 PT_HNZNZ635 +BS_GXTFW99H BCL2L13--IGL-@ other BCL2L13 NA IGL-@ NA NA Oncogene NA NA NA STARFUSION 1 PT_HNZNZ635 +BS_GXTFW99H BCL2L13--IGL@ other BCL2L13 NA IGL@ NA NA Oncogene NA NA NA STARFUSION 1 PT_HNZNZ635 +BS_GXTFW99H MKL1--ACO2 frameshift MKL1 NA ACO2 NA Oncogene NA NA NA NA ARRIBA 1 PT_HNZNZ635 +BS_GXTFW99H MYH9--MLC1 other MYH9 NA MLC1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_HNZNZ635 +BS_GXTFW99H PLAGL1--PHACTR2 other PLAGL1 NA PHACTR2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_HNZNZ635 +BS_GYA4V1RD AL445673.1--PRRX1/MROH9 other AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_XWVQW6JX +BS_GYA4V1RD ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_XWVQW6JX +BS_GYA4V1RD CHCHD3--AC073311.1 frameshift CHCHD3 NA AC073311.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_XWVQW6JX +BS_GYA4V1RD CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XWVQW6JX +BS_GYA4V1RD ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XWVQW6JX +BS_GYA4V1RD KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_XWVQW6JX +BS_GYA4V1RD LINC-PINT--UBE2H other LINC-PINT NA UBE2H NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_XWVQW6JX +BS_GYA4V1RD NRCAM--DGKI other NRCAM NA DGKI NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_XWVQW6JX +BS_GYA4V1RD ROBO2--ROBO2 frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_XWVQW6JX +BS_GYA4V1RD SND1--PTN frameshift SND1 NA PTN NA CosmicCensus Oncogene NA NA NA ARRIBA 1 PT_XWVQW6JX +BS_GYXSDZ56 CDH20--CDH20 frameshift CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_5P3XJ97K +BS_GYXSDZ56 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_5P3XJ97K +BS_GYXSDZ56 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_5P3XJ97K +BS_GYXSDZ56 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_5P3XJ97K +BS_H0QWRJE2 DAW1--ZNF609 frameshift DAW1 NA ZNF609 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_H0QWRJE2 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_H0QWRJE2 TARSL2--ZNF609 other TARSL2 NA ZNF609 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_H0QWRJE2 WFS1--PLAG1 other WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_MDWPRDBT +BS_H1ZS5FMZ AGAP2--AC080011.1/AC087883.1 frameshift AGAP2 NA AC080011.1 AC087883.1 Oncogene NA NA NA NA ARRIBA 1 PT_MXK5R7RJ +BS_H1ZS5FMZ CTIF--AC068112.1/LINC01912 frameshift CTIF NA AC068112.1 LINC01912 Oncogene NA NA NA NA ARRIBA 1 PT_MXK5R7RJ +BS_H1ZS5FMZ EPS15--DMD in-frame EPS15 NA DMD NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA ARRIBA 1 PT_MXK5R7RJ +BS_H1ZS5FMZ IGF2R--AC097512.1 frameshift IGF2R NA AC097512.1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_MXK5R7RJ +BS_H1ZS5FMZ IGF2R--AC097512.1/AC114912.1 frameshift IGF2R NA AC097512.1 AC114912.1 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_MXK5R7RJ +BS_H1ZS5FMZ PSIP1--FREM1 frameshift PSIP1 NA FREM1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_MXK5R7RJ +BS_H1ZS5FMZ PSIP1--FREM1 other PSIP1 NA FREM1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_MXK5R7RJ +BS_H1ZS5FMZ WWOX--CDYL2 in-frame WWOX NA CDYL2 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_MXK5R7RJ +BS_H3FE3TH9 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_1BV6ND1D +BS_H4B5Y6S0 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_QYEF3JAT +BS_H4B5Y6S0 CEP170--AKT3 other CEP170 NA AKT3 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_QYEF3JAT +BS_H4B5Y6S0 DDX1--MYT1L/AC018685.2 frameshift DDX1 NA MYT1L AC018685.2 Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_QYEF3JAT +BS_H4B5Y6S0 JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_QYEF3JAT +BS_H4B5Y6S0 KCNA1--PIK3C2G frameshift KCNA1 NA PIK3C2G NA NA Kinase NA NA NA ARRIBA 1 PT_QYEF3JAT +BS_H4B5Y6S0 LRRFIP1--MYT1L frameshift LRRFIP1 NA MYT1L NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_QYEF3JAT +BS_H4B5Y6S0 PILRB--AKAP9 other PILRB NA AKAP9 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_QYEF3JAT +BS_H4B5Y6S0 PVRIG2P--AKAP9 other PVRIG2P NA AKAP9 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_QYEF3JAT +BS_H4B5Y6S0 STAG3L5P-PVRIG2P-PILRB--AKAP9 other STAG3L5P-PVRIG2P-PILRB NA AKAP9 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_QYEF3JAT +BS_H4NXBD2D C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_0CVRX4SJ +BS_H4NXBD2D PAX6--SF1 other PAX6 NA SF1 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_0CVRX4SJ +BS_H4NXBD2D TFRC--LINC00969 frameshift TFRC NA LINC00969 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_0CVRX4SJ +BS_H8A9PSYA KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_XSS1ANXD +BS_H8A9PSYA REV3L--FYN in-frame REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_XSS1ANXD +BS_H8A9PSYA ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_XSS1ANXD +BS_H97S5SQN CACNA2D1--ELMO1/NECAP1P1 frameshift CACNA2D1 NA ELMO1 NECAP1P1 NA Oncogene NA NA NA ARRIBA 1 PT_DMAF1J4A +BS_H97S5SQN CCDC144CP--USP32 other CCDC144CP NA USP32 NA NA Oncogene NA NA NA ARRIBA 1 PT_DMAF1J4A +BS_H97S5SQN CSMD1--BX547991.1 frameshift CSMD1 NA BX547991.1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_DMAF1J4A +BS_H97S5SQN ITCH--NCOA6 other ITCH NA NCOA6 NA NA Oncogene NA NA NA ARRIBA 1 PT_DMAF1J4A +BS_H97S5SQN LARP4B--TCERG1L/LINC01164 frameshift LARP4B NA TCERG1L LINC01164 CosmicCensus NA NA NA NA ARRIBA 1 PT_DMAF1J4A +BS_H97S5SQN MAD1L1--STEAP2-AS1 frameshift MAD1L1 NA STEAP2-AS1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_DMAF1J4A +BS_H97S5SQN MAGI2--FEZF1 frameshift MAGI2 NA FEZF1 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_DMAF1J4A +BS_H97S5SQN NCOA6--ITCH other NCOA6 NA ITCH NA Oncogene NA NA NA NA ARRIBA 1 PT_DMAF1J4A +BS_H97S5SQN PTEN--AL133232.1/RNU6-929P frameshift PTEN NA AL133232.1 RNU6-929P TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_DMAF1J4A +BS_H97S5SQN REV3L--FYN in-frame REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_DMAF1J4A +BS_H97S5SQN STX8--DUX4L2/DUX4 frameshift STX8 NA DUX4L2 DUX4 NA NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_DMAF1J4A +BS_H97S5SQN ZEB2--ZEB2 frameshift ZEB2 NA ZEB2 NA Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_DMAF1J4A +BS_HA20Y4XY NF1--AC007923.1/AC004253.2 frameshift NF1 NA AC007923.1 AC004253.2 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_4ZSR5DY8 +BS_HBJZR69P CLU--CD74 frameshift CLU NA CD74 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_8WNA6M94 +BS_HC44ZA0V AL358972.1/AL450345.1--MYB other AL358972.1 AL450345.1 MYB NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_8RB7TPS2 +BS_HC44ZA0V ARID1B--QKI frameshift ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_8RB7TPS2 +BS_HC44ZA0V ARID1B--QKI in-frame ARID1B NA QKI NA CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_8RB7TPS2 +BS_HC44ZA0V FYN--C6orf106 other FYN NA C6orf106 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_8RB7TPS2 +BS_HC44ZA0V QKI--AL355297.4 frameshift QKI NA AL355297.4 NA TumorSuppressorGene, CosmicCensus NA NA NA NA ARRIBA 1 PT_8RB7TPS2 +BS_HC44ZA0V QKI--ARID1B other QKI NA ARID1B NA TumorSuppressorGene, CosmicCensus CosmicCensus, Oncogene NA NA NA STARFUSION 1 PT_8RB7TPS2 +BS_HC44ZA0V UNC79--UNC79 frameshift UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_8RB7TPS2 +BS_HCP5C912 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_WG5PHHSQ +BS_HCP5C912 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_WG5PHHSQ +BS_HCP5C912 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_WG5PHHSQ +BS_HCP5C912 CIT--CIT in-frame CIT NA CIT NA Kinase Kinase NA NA NA ARRIBA 1 PT_WG5PHHSQ +BS_HCP5C912 CNTN4--CNTN4 in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WG5PHHSQ +BS_HCP5C912 CSMD1--CSMD1 in-frame CSMD1 NA CSMD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_WG5PHHSQ +BS_HCP5C912 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_WG5PHHSQ +BS_HCP5C912 DCLK2--DCLK2 frameshift DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_WG5PHHSQ +BS_HCP5C912 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WG5PHHSQ +BS_HCP5C912 FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_WG5PHHSQ +BS_HCP5C912 FPGT-TNNI3K--FPGT-TNNI3K frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_WG5PHHSQ +BS_HCP5C912 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_WG5PHHSQ +BS_HCP5C912 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_WG5PHHSQ +BS_HCP5C912 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WG5PHHSQ +BS_HCP5C912 MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_WG5PHHSQ +BS_HD4EJYE3 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_EZS4SRH6 +BS_HD4EJYE3 BPTF--SPTAN1 frameshift BPTF NA SPTAN1 NA TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_EZS4SRH6 +BS_HD4EJYE3 JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_EZS4SRH6 +BS_HE57E1RP PRRC2C--RGL1 other PRRC2C NA RGL1 NA NA Oncogene NA NA NA ARRIBA 1 PT_9DER14KH +BS_HE57E1RP PVT1--ASAP1 other PVT1 NA ASAP1 NA Oncogene NA NA NA NA ARRIBA 1 PT_9DER14KH +BS_HE57E1RP PVT1--LRRC69 other PVT1 NA LRRC69 NA Oncogene NA NA NA NA ARRIBA 1 PT_9DER14KH +BS_HE57E1RP PVT1--SLC26A7 other PVT1 NA SLC26A7 NA Oncogene NA NA NA NA ARRIBA 1 PT_9DER14KH +BS_HF3RNN2T AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_DFXQFYPV +BS_HF3RNN2T JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_DFXQFYPV +BS_HF3RNN2T ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_DFXQFYPV +BS_HHPA8NJ2 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_QW5VW2PY +BS_HHPA8NJ2 CTDSP1--CFLAR frameshift CTDSP1 NA CFLAR NA NA Oncogene NA NA NA ARRIBA 1 PT_QW5VW2PY +BS_HHPA8NJ2 ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_QW5VW2PY +BS_HKZENFDA AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_DESHZ91V +BS_HKZENFDA JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_DESHZ91V +BS_HKZENFDA RNU6-36P--EIF4A2 other RNU6-36P NA EIF4A2 NA NA CosmicCensus, Oncogene NA NA NA STARFUSION 1 PT_DESHZ91V +BS_HQ5BJ6MW KIAA1549--BRAF other KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_E1TRJP8V +BS_HQ5BJ6MW KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_E1TRJP8V +BS_HSHN8PBB KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_E78NHRWQ +BS_HTEPAKCM JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_G3AVDN4E +BS_HV8PFRBR RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_DEYCW197 +BS_HWGWYCY7 ABR--PITPNA frameshift ABR NA PITPNA NA Oncogene NA NA NA TCGAFusion ARRIBA 1 PT_JT9HH7M6 +BS_HWGWYCY7 ATF7IP--PAG1 frameshift ATF7IP NA PAG1 NA Oncogene NA NA NA NA ARRIBA 1 PT_JT9HH7M6 +BS_HWGWYCY7 ATP1B1--DNMT3A in-frame ATP1B1 NA DNMT3A NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JT9HH7M6 +BS_HWGWYCY7 ATP6V1B2--KAT6A/AC103724.1 frameshift ATP6V1B2 NA KAT6A AC103724.1 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JT9HH7M6 +BS_HWGWYCY7 BCL2L2--AP001412.1/AP001437.1 frameshift BCL2L2 NA AP001412.1 AP001437.1 Oncogene NA NA NA NA ARRIBA 1 PT_JT9HH7M6 +BS_HWGWYCY7 LPGAT1--ZNF704 in-frame LPGAT1 NA ZNF704 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_JT9HH7M6 +BS_HWGWYCY7 NPAS3--AC245884.4/TTYH1 frameshift NPAS3 NA AC245884.4 TTYH1 TranscriptionFactor NA NA Oncogene NA ARRIBA 1 PT_JT9HH7M6 +BS_HWGWYCY7 TOM1L2--LINC01691/AC242852.1 other TOM1L2 NA LINC01691 AC242852.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_JT9HH7M6 +BS_HWGWYCY7 ZFHX4--AC005832.4 frameshift ZFHX4 NA AC005832.4 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JT9HH7M6 +BS_HWGWYCY7 ZFHX4--NDUFA9 in-frame ZFHX4 NA NDUFA9 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JT9HH7M6 +BS_HWGWYCY7 ZNF704--AC138646.1/AC100870.1 frameshift ZNF704 NA AC138646.1 AC100870.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JT9HH7M6 +BS_HWGWYCY7 ZNRF3--C8orf33 frameshift ZNRF3 NA C8orf33 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_JT9HH7M6 +BS_HWGWYCY7 ZNRF3--LINC01821 frameshift ZNRF3 NA LINC01821 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_JT9HH7M6 +BS_HX0S30NE BRAF--TRIM24 frameshift BRAF NA TRIM24 NA Kinase, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_H45M7M2T +BS_HX0S30NE JAZF1--DPY19L2P3 frameshift JAZF1 NA DPY19L2P3 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_H45M7M2T +BS_HX0S30NE JAZF1--DPY19L2P3 other JAZF1 NA DPY19L2P3 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA STARFUSION 1 PT_H45M7M2T +BS_HX0S30NE LMTK2--SLC25A13 frameshift LMTK2 NA SLC25A13 NA Kinase NA NA NA NA ARRIBA 1 PT_H45M7M2T +BS_HX0S30NE SND1--LHFPL3 frameshift SND1 NA LHFPL3 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_H45M7M2T +BS_HX0S30NE TAX1BP1--BRAF in-frame TAX1BP1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_H45M7M2T +BS_HX0S30NE TRIM24--BRAF other TRIM24 NA BRAF NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_H45M7M2T +BS_HX0S30NE TRIM24--BRAF in-frame TRIM24 NA BRAF NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_H45M7M2T +BS_HX0S30NE TRIM24--BRAF/AC006006.1 frameshift TRIM24 NA BRAF AC006006.1 TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_H45M7M2T +BS_HX0S30NE TSPAN13--SP4 frameshift TSPAN13 NA SP4 NA TumorSuppressorGene TranscriptionFactor NA NA NA ARRIBA 1 PT_H45M7M2T +BS_HZ707C55 GRID2--ULK4 in-frame GRID2 NA ULK4 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_ZZRBX5JT +BS_HZ707C55 GRID2--ULK4 frameshift GRID2 NA ULK4 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_ZZRBX5JT +BS_HZ707C55 LINC01019--LINC01019/IRX1 other LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA ARRIBA 1 PT_ZZRBX5JT +BS_HZ707C55 LMNTD1--LMNTD1 frameshift LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_ZZRBX5JT +BS_HZ707C55 NRIP1--TTC9C other NRIP1 NA TTC9C NA Oncogene NA NA NA NA ARRIBA 1 PT_ZZRBX5JT +BS_HZ707C55 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ZZRBX5JT +BS_HZ707C55 ULK4--GRID2 frameshift ULK4 NA GRID2 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_ZZRBX5JT +BS_HZE3KYZ1 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_E4ECAFEN +BS_HZRM07TW AC022893.2/TERF1--PTK2 other AC022893.2 TERF1 PTK2 NA NA Kinase TranscriptionFactor NA NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW AGO2--NRBP2 in-frame AGO2 NA NRBP2 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW BMP1--CSMD1 frameshift BMP1 NA CSMD1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW CSPP1--NSMCE2/TRIB1 frameshift CSPP1 NA NSMCE2 TRIB1 NA NA NA Kinase NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW DLC1--NUDCD1 frameshift DLC1 NA NUDCD1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW FAM110B--CSMD1 other FAM110B NA CSMD1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW HNF4G--PAG1 other HNF4G NA PAG1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW HOOK3--CHRAC1 in-frame HOOK3 NA CHRAC1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW MSRA--WWP1 in-frame MSRA NA WWP1 NA NA Oncogene NA NA NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW MSRA--WWP1 frameshift MSRA NA WWP1 NA NA Oncogene NA NA NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW NSMCE2/TRIB1--CSPP1 other NSMCE2 TRIB1 CSPP1 NA NA NA Kinase NA NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW PAG1--HNF4G other PAG1 NA HNF4G NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW PTK2--AC022893.2/TERF1 frameshift PTK2 NA AC022893.2 TERF1 Kinase NA NA TranscriptionFactor NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW PVT1--LINC01419/AC015522.1 other PVT1 NA LINC01419 AC015522.1 Oncogene NA NA NA NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW RMRP--AL139099.5 other RMRP NA AL139099.5 NA Oncogene NA NA NA NA STARFUSION 1 PT_EDWA0XTP +BS_HZRM07TW RMRP--RN7SL1 other RMRP NA RN7SL1 NA Oncogene NA NA NA NA STARFUSION 1 PT_EDWA0XTP +BS_HZRM07TW TNFRSF10B--AC022360.2/RNU4-37P frameshift TNFRSF10B NA AC022360.2 RNU4-37P TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW WWP1--CCDC25 in-frame WWP1 NA CCDC25 NA Oncogene NA NA NA NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW ZHX2--AF117829.1 other ZHX2 NA AF117829.1 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_EDWA0XTP +BS_HZRM07TW ZHX2--KRT8P4/AF117829.1 other ZHX2 NA KRT8P4 AF117829.1 TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_EDWA0XTP +BS_J1AB8PMA AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_0WMP712K +BS_J483EMFP MYT1L--MYT1L frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ESHACWF6 +BS_J483EMFP ULK4--ULK4 other ULK4 NA ULK4 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_ESHACWF6 +BS_J60G8DMK PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_G16WS1MW +BS_J70GK8SM ZBTB44--TTC28 in-frame ZBTB44 NA TTC28 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_QWR0EECG +BS_J70GK8SM ZBTB44--TTC28 frameshift ZBTB44 NA TTC28 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_QWR0EECG +BS_J71N7D09 MTSS1--MTSS1 frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_TVK2KY36 +BS_J71N7D09 NFIB--NFIB frameshift NFIB NA NFIB NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_TVK2KY36 +BS_J8G4SH4Z JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_P4ZEFY19 +BS_J8G4SH4Z ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_P4ZEFY19 +BS_J8VX4D17 MALAT1--DST other MALAT1 NA DST NA CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_7E3V3JFX +BS_J8VX4D17 RN7SL2--VIM other RN7SL2 NA VIM NA NA TumorSuppressorGene NA NA NA STARFUSION 1 PT_7E3V3JFX +BS_JAEM78XS BIN1--AC020718.1 other BIN1 NA AC020718.1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_82MX6J77 +BS_JAEM78XS BTRC--RPS27P18/TEX36-AS1 frameshift BTRC NA RPS27P18 TEX36-AS1 Oncogene NA NA NA NA ARRIBA 1 PT_82MX6J77 +BS_JAEM78XS NOTCH3--SLC47A1 frameshift NOTCH3 NA SLC47A1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_82MX6J77 +BS_JAEM78XS PAM--PTTG1IP other PAM NA PTTG1IP NA NA Oncogene NA NA NA ARRIBA 1 PT_82MX6J77 +BS_JAEM78XS RMRP--RN7SK other RMRP NA RN7SK NA Oncogene NA NA NA NA STARFUSION 1 PT_82MX6J77 +BS_JAEM78XS UNC5C--NPNT frameshift UNC5C NA NPNT NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_82MX6J77 +BS_JB43XBCQ BCL11B--LINC01550/AL163932.1 frameshift BCL11B NA LINC01550 AL163932.1 CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1E3E6GMF +BS_JB43XBCQ CHCHD3--SNORA51/AC008155.2 frameshift CHCHD3 NA SNORA51 AC008155.2 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1E3E6GMF +BS_JB43XBCQ MAD1L1--AC003092.2/COL1A2 other MAD1L1 NA AC003092.2 COL1A2 TumorSuppressorGene, Oncogene NA NA Oncogene NA ARRIBA 1 PT_1E3E6GMF +BS_JB43XBCQ MBD5--ZNF516 other MBD5 NA ZNF516 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_1E3E6GMF +BS_JB43XBCQ MPP5--NPAS3 frameshift MPP5 NA NPAS3 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_1E3E6GMF +BS_JB43XBCQ SPPL2B--HTT frameshift SPPL2B NA HTT NA Oncogene NA NA NA NA ARRIBA 1 PT_1E3E6GMF +BS_JB43XBCQ TRAF3--TDRD9 other TRAF3 NA TDRD9 NA Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_1E3E6GMF +BS_JFB984RG CNTN6--CNTN6 in-frame CNTN6 NA CNTN6 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7KBMN6C2 +BS_JFEZA9KE ALDH7A1--SMARCC1 in-frame ALDH7A1 NA SMARCC1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_F822DBA0 +BS_JFEZA9KE EWSR1--FLI1 in-frame EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_F822DBA0 +BS_JFR750KD PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_S2SQJVGK +BS_JGA9BP3A AL691447.2--ZNF782 other AL691447.2 NA ZNF782 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A ARSA--NF2 frameshift ARSA NA NF2 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A CHEK2--NF2 frameshift CHEK2 NA NF2 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A CHEK2--NF2 other CHEK2 NA NF2 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A CLTCL1--T frameshift CLTCL1 NA T NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A CR381572.2/CR381572.1--MYO18B other CR381572.2 CR381572.1 MYO18B NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A EWSR1--PLAGL1 other EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA STARFUSION, ARRIBA 2 PT_WE1CHTWK +BS_JGA9BP3A EWSR1--PLAGL1 in-frame EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA STARFUSION, ARRIBA 2 PT_WE1CHTWK +BS_JGA9BP3A EWSR1--PLAGL1 frameshift EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA STARFUSION, ARRIBA 2 PT_WE1CHTWK +BS_JGA9BP3A GNAZ--MYO18B other GNAZ NA MYO18B NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A HMGCR--SH3YL1 in-frame HMGCR NA SH3YL1 NA Oncogene NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A IGF2R--AL133456.1/AL121885.2 frameshift IGF2R NA AL133456.1 AL121885.2 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A LARGE1--ZNRF3 other LARGE1 NA ZNRF3 NA NA CosmicCensus NA NA NA STARFUSION, ARRIBA 2 PT_WE1CHTWK +BS_JGA9BP3A LPA--QKI frameshift LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A LPA--QKI in-frame LPA NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A LPAL2--QKI other LPAL2 NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A MYO18B--LINC02560 other MYO18B NA LINC02560 NA TumorSuppressorGene NA NA NA NA STARFUSION 1 PT_WE1CHTWK +BS_JGA9BP3A MYO18B--LINC02560 frameshift MYO18B NA LINC02560 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A NAT10/ABTB2--ABTB2 other NAT10 ABTB2 ABTB2 NA NA Oncogene Oncogene NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A NF2--AL031587.6 other NF2 NA AL031587.6 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA STARFUSION 1 PT_WE1CHTWK +BS_JGA9BP3A NF2--MAPK8IP2/ARSA frameshift NF2 NA MAPK8IP2 ARSA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A PARVB--MIR1202/SNORD28B frameshift PARVB NA MIR1202 SNORD28B Oncogene NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A RBFOX2--IGL-@ other RBFOX2 NA IGL-@ NA NA Oncogene NA NA NA STARFUSION 1 PT_WE1CHTWK +BS_JGA9BP3A RBFOX2--IGL@ other RBFOX2 NA IGL@ NA NA Oncogene NA NA NA STARFUSION 1 PT_WE1CHTWK +BS_JGA9BP3A RNF225--MYO18B other RNF225 NA MYO18B NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A RPS6KA2--LINC00207 frameshift RPS6KA2 NA LINC00207 NA TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A TEF/AL008582.1--CCDC134 other TEF AL008582.1 CCDC134 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A THOC5--WDR27 in-frame THOC5 NA WDR27 NA Oncogene NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A ZBED4--LPA other ZBED4 NA LPA NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A ZBED4/ALG12--LPA other ZBED4 ALG12 LPA NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGA9BP3A ZNF552--MLC1 other ZNF552 NA MLC1 NA TranscriptionFactor NA NA NA NA STARFUSION 1 PT_WE1CHTWK +BS_JGA9BP3A ZNF586--SMTN in-frame ZNF586 NA SMTN NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_WE1CHTWK +BS_JGPR9SR2 CLIC4--ETFBKMT other CLIC4 NA ETFBKMT NA Oncogene NA NA NA NA ARRIBA 1 PT_ECBD1D5J +BS_JH29M4KG CDH10--CDH10 frameshift CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_0MHKP408 +BS_JH29M4KG CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_0MHKP408 +BS_JHGW42S6 MYO3A--MYO3A frameshift MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_EB89G70N +BS_JK0VPG1T CTNND1--KHDRBS1 in-frame CTNND1 NA KHDRBS1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_ATS9XDJ5 +BS_JKXA3FQC BRAF--TPK1 frameshift BRAF NA TPK1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA ARRIBA 1 PT_4JG5KWE8 +BS_JKXA3FQC FAM131B--BRAF in-frame FAM131B NA BRAF NA CosmicCensus Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_4JG5KWE8 +BS_JKXA3FQC SSBP1--TPK1 frameshift SSBP1 NA TPK1 NA NA Oncogene NA NA NA ARRIBA 1 PT_4JG5KWE8 +BS_JMHG7GCN KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_5CNZ47XV +BS_JQVAWTTM DAPK1--ECM2 frameshift DAPK1 NA ECM2 NA Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_M23Q0DC3 +BS_JQVAWTTM PVT1--RN7SKP93/MGAT5 other PVT1 NA RN7SKP93 MGAT5 Oncogene NA NA NA NA ARRIBA 1 PT_M23Q0DC3 +BS_JR5ATB7G LDHA--RNF144A other LDHA NA RNF144A NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_8M6W215T +BS_JR5ATB7G PHF21A--MRE11 other PHF21A NA MRE11 NA TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_8M6W215T +BS_JR5ATB7G TMSB10--GNAS in-frame TMSB10 NA GNAS NA Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_8M6W215T +BS_JRYJGYC4 CDK11A--NBAS frameshift CDK11A NA NBAS NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_S2BEPYQ0 +BS_JRYJGYC4 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_S2BEPYQ0 +BS_JRYJGYC4 TRIM33--NR1H5P frameshift TRIM33 NA NR1H5P NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_S2BEPYQ0 +BS_JRYJGYC4 TRIM33--SIKE1 in-frame TRIM33 NA SIKE1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_S2BEPYQ0 +BS_JRYJGYC4 TRIM33--SYCP1 frameshift TRIM33 NA SYCP1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_S2BEPYQ0 +BS_JRYJGYC4 ZNF24--CELF4 other ZNF24 NA CELF4 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_S2BEPYQ0 +BS_JS95PE0J ASH1L--C11orf74 frameshift ASH1L NA C11orf74 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KZ04SDDS +BS_JSPR854S CD109--CD109 in-frame CD109 NA CD109 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0H65S44B +BS_JT82QGXF AFF2--SND1 in-frame AFF2 NA SND1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_MSBPMJ56 +BS_JT82QGXF IQSEC3--CLIC4/RUNX3 other IQSEC3 NA CLIC4 RUNX3 NA Oncogene NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA ARRIBA 1 PT_MSBPMJ56 +BS_JT82QGXF JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_MSBPMJ56 +BS_JT82QGXF SND1--AFF2 in-frame SND1 NA AFF2 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_MSBPMJ56 +BS_JTMXAMB7 BRCA1--BRCA1 frameshift BRCA1 NA BRCA1 NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_5F4N0CAP +BS_JVA2NQFF ADAM12--ADAM12 frameshift ADAM12 NA ADAM12 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_4TASAQKA +BS_JVA2NQFF AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_4TASAQKA +BS_JVA2NQFF AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_4TASAQKA +BS_JVA2NQFF CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_4TASAQKA +BS_JVA2NQFF KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_4TASAQKA +BS_JVA2NQFF KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_4TASAQKA +BS_JVA2NQFF KCNH1--KCNH1 in-frame KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_4TASAQKA +BS_JVA2NQFF KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_4TASAQKA +BS_JVA2NQFF MYRFL--MYRFL frameshift MYRFL NA MYRFL NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_4TASAQKA +BS_JVA2NQFF MYT1L--MYT1L frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_4TASAQKA +BS_JWSR581E KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_6E8JYRXM +BS_JX449BF5 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_90W4HCNR +BS_JX7S9MY7 RFX4--RFX4 in-frame RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_B0JFCN5W +BS_JXF8A2A6 ERICH1--ERICH1 other ERICH1 NA ERICH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_EHE800JJ +BS_JXF8A2A6 EWSR1--FLI1 in-frame EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_EHE800JJ +BS_JXF8A2A6 RALGAPB--MANBAL/SRC other RALGAPB NA MANBAL SRC NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA ARRIBA 1 PT_EHE800JJ +BS_JXNZYGCR AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_3A87PCQK +BS_JXNZYGCR CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_3A87PCQK +BS_JXNZYGCR ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3A87PCQK +BS_JXNZYGCR KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_3A87PCQK +BS_JXNZYGCR KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_3A87PCQK +BS_JXNZYGCR KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3A87PCQK +BS_JXNZYGCR ROBO2--ROBO2 frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_3A87PCQK +BS_JXNZYGCR ZNF699--ZNF699/ZNF559 frameshift ZNF699 NA ZNF699 ZNF559 TranscriptionFactor TranscriptionFactor NA TranscriptionFactor NA ARRIBA 1 PT_3A87PCQK +BS_K17VQECG AC010132.3--ABCB1 in-frame AC010132.3 NA ABCB1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG DAAM1--FUT8 frameshift DAAM1 NA FUT8 NA NA Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG DNMT1--CASP14/OR1I1 frameshift DNMT1 NA CASP14 OR1I1 TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG ESR2--CTAGE5 other ESR2 NA CTAGE5 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG ETNK1--SLC22A23 frameshift ETNK1 NA SLC22A23 NA CosmicCensus, Kinase Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG FOXP1--CNTN3/NIPA2P2 frameshift FOXP1 NA CNTN3 NIPA2P2 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG INHBA-AS1--ABCB1 other INHBA-AS1 NA ABCB1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG KHSRP--SH3GL1 frameshift KHSRP NA SH3GL1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG KHSRP--SH3GL1 in-frame KHSRP NA SH3GL1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG LMTK2--AC002454.1 frameshift LMTK2 NA AC002454.1 NA Kinase NA NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG LMTK2--CDK6 frameshift LMTK2 NA CDK6 NA Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG LRIG1--KMT2C frameshift LRIG1 NA KMT2C NA TumorSuppressorGene, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG MAST1--GRXCR1 in-frame MAST1 NA GRXCR1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG NIN--AL133166.1 frameshift NIN NA AL133166.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG NIN--AL359232.1 frameshift NIN NA AL359232.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG PSMA2--ABCB1 in-frame PSMA2 NA ABCB1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG RB1--SPATA2P1/RN7SKP6 frameshift RB1 NA SPATA2P1 RN7SKP6 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG SAFB--AC005394.2 frameshift SAFB NA AC005394.2 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG SAFB--AC005524.1 frameshift SAFB NA AC005524.1 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG SAFB--AC005524.1/MAN1A2P1 frameshift SAFB NA AC005524.1 MAN1A2P1 TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG SAFB2--HOOK2 frameshift SAFB2 NA HOOK2 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG SAFB2--MAST1 frameshift SAFB2 NA MAST1 NA TumorSuppressorGene, TranscriptionFactor Kinase, Kinase NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG SRP54--PRKCH frameshift SRP54 NA PRKCH NA NA Kinase NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG SYNE2--CTAGE5 frameshift SYNE2 NA CTAGE5 NA Oncogene NA NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG SYNE2--EGLN3-AS1 other SYNE2 NA EGLN3-AS1 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_KEQ53KRH +BS_K17VQECG SYNE2--RTN1 frameshift SYNE2 NA RTN1 NA Oncogene NA NA NA TCGAFusion ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG WDR19--KLF3/RNA5SP158 frameshift WDR19 NA KLF3 RNA5SP158 NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG XAB2--ELMO1 frameshift XAB2 NA ELMO1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K17VQECG ZBTB7A--AC096734.1/RN7SKP82 other ZBTB7A NA AC096734.1 RN7SKP82 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KEQ53KRH +BS_K2FHZGTK CUX2--MED13L other CUX2 NA MED13L NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_AXMVG8QE +BS_K2FHZGTK MED13L--CUX2 frameshift MED13L NA CUX2 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_AXMVG8QE +BS_K2FHZGTK PLEKHG4--CNBP other PLEKHG4 NA CNBP NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_AXMVG8QE +BS_K2VYFVKZ CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PFA762TK +BS_K2VYFVKZ KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_PFA762TK +BS_K5802F84 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_NZFFMZ0B +BS_K5802F84 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_NZFFMZ0B +BS_K5802F84 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_NZFFMZ0B +BS_K5802F84 DCLK2--DCLK2 frameshift DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_NZFFMZ0B +BS_K5802F84 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NZFFMZ0B +BS_K5802F84 FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_NZFFMZ0B +BS_K5802F84 JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_NZFFMZ0B +BS_K5802F84 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_NZFFMZ0B +BS_K5802F84 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_NZFFMZ0B +BS_K5802F84 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NZFFMZ0B +BS_K5802F84 MCF2--MCF2 frameshift MCF2 NA MCF2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NZFFMZ0B +BS_K5802F84 MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_NZFFMZ0B +BS_K5802F84 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_NZFFMZ0B +BS_K74PZET7 AC068446.3/AC068446.1--NBEAP1 other AC068446.3 AC068446.1 NBEAP1 NA NA Oncogene NA NA NA ARRIBA 1 PT_ZG4J0EK0 +BS_K74PZET7 JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_ZG4J0EK0 +BS_K74PZET7 MKRN7P--AL031686.1/ZNF334 other MKRN7P NA AL031686.1 ZNF334 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_ZG4J0EK0 +BS_K7MVS0Z7 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_ADTP7EHN +BS_K81DR8XG ELF2--LINC02462/AC093722.1 frameshift ELF2 NA LINC02462 AC093722.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_GH6HM5QF +BS_K81DR8XG FGFR4--PLXNB1 frameshift FGFR4 NA PLXNB1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA ARRIBA 1 PT_GH6HM5QF +BS_K81DR8XG NCOA2--PAX3 in-frame NCOA2 NA PAX3 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GH6HM5QF +BS_K81DR8XG NCOA2--PAX3 frameshift NCOA2 NA PAX3 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GH6HM5QF +BS_KBEX4RT2 AAK1--AC007402.1 frameshift AAK1 NA AC007402.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_84Q11Z5X +BS_KBEX4RT2 AAK1--AC007402.1/AC139712.2 frameshift AAK1 NA AC007402.1 AC139712.2 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_84Q11Z5X +BS_KBEX4RT2 ANKH--TRIO frameshift ANKH NA TRIO NA NA Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_84Q11Z5X +BS_KBEX4RT2 ANKHD1--SPARC in-frame ANKHD1 NA SPARC NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_84Q11Z5X +BS_KBEX4RT2 ANKHD1-EIF4EBP3--SPARC in-frame ANKHD1-EIF4EBP3 NA SPARC NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_84Q11Z5X +BS_KBEX4RT2 CBX5--AC008083.1/AC008083.2 other CBX5 NA AC008083.1 AC008083.2 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_84Q11Z5X +BS_KBEX4RT2 CTNNA1--AL390334.1/BNIP3P1 other CTNNA1 NA AL390334.1 BNIP3P1 Oncogene NA NA NA NA ARRIBA 1 PT_84Q11Z5X +BS_KBEX4RT2 GABRB2--MAP3K1 frameshift GABRB2 NA MAP3K1 NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_84Q11Z5X +BS_KBEX4RT2 HMMR--BMP4 frameshift HMMR NA BMP4 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_84Q11Z5X +BS_KBEX4RT2 ITGB3--SEPT9 in-frame ITGB3 NA SEPT9 NA TumorSuppressorGene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_84Q11Z5X +BS_KBEX4RT2 MAT2B--MXD3/LMAN2 frameshift MAT2B NA MXD3 LMAN2 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_84Q11Z5X +BS_KBEX4RT2 RANBP17--EBF1 frameshift RANBP17 NA EBF1 NA Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_84Q11Z5X +BS_KBEX4RT2 REV3L--FYN in-frame REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_84Q11Z5X +BS_KBEX4RT2 RNF180--AC091976.1 frameshift RNF180 NA AC091976.1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_84Q11Z5X +BS_KBEX4RT2 ZNF438--ZEB1 other ZNF438 NA ZEB1 NA TranscriptionFactor CosmicCensus, TranscriptionFactor NA NA NA ARRIBA 1 PT_84Q11Z5X +BS_KBT7MQ6H C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_CYBYN18G +BS_KBT7MQ6H C11orf95--RELA frameshift C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_CYBYN18G +BS_KBT7MQ6H CADM1--CASP5 in-frame CADM1 NA CASP5 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_CYBYN18G +BS_KBT7MQ6H CARS--PAFAH1B2 in-frame CARS NA PAFAH1B2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CYBYN18G +BS_KBT7MQ6H DKK3--CSTF3-AS1 frameshift DKK3 NA CSTF3-AS1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CYBYN18G +BS_KBT7MQ6H FAT3--MIR100HG frameshift FAT3 NA MIR100HG NA CosmicCensus NA NA NA NA ARRIBA 1 PT_CYBYN18G +BS_KBT7MQ6H FRMD8--ME3 in-frame FRMD8 NA ME3 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CYBYN18G +BS_KBT7MQ6H LTBP3--AP000769.1/AP000769.3 frameshift LTBP3 NA AP000769.1 AP000769.3 Oncogene NA NA NA NA ARRIBA 1 PT_CYBYN18G +BS_KBT7MQ6H LTBP3--AP000769.3/MALAT1 frameshift LTBP3 NA AP000769.3 MALAT1 Oncogene NA NA CosmicCensus, Oncogene NA ARRIBA 1 PT_CYBYN18G +BS_KBT7MQ6H PPME1--CADM1 frameshift PPME1 NA CADM1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_CYBYN18G +BS_KBT7MQ6H STX5--HTATIP2 in-frame STX5 NA HTATIP2 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_CYBYN18G +BS_KBT7MQ6H STX5--HTATIP2 frameshift STX5 NA HTATIP2 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_CYBYN18G +BS_KDSTG5YY AL445673.1--PRRX1/MROH9 other AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_2CJ31SBX +BS_KDSTG5YY MGMT--AL355537.2/AL391869.1 frameshift MGMT NA AL355537.2 AL391869.1 CosmicCensus NA NA NA NA ARRIBA 1 PT_2CJ31SBX +BS_KE56MMY0 ABR--EVI2B frameshift ABR NA EVI2B NA Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 AC245595.1--RABGAP1L other AC245595.1 NA RABGAP1L NA NA Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 API5--SLX4 frameshift API5 NA SLX4 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 ARHGEF2--NTRK1 frameshift ARHGEF2 NA NTRK1 NA Oncogene CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 ARHGEF2--NTRK1 in-frame ARHGEF2 NA NTRK1 NA Oncogene CosmicCensus, Oncogene, Kinase NA NA NA STARFUSION 1 PT_9PJR0ZK7 +BS_KE56MMY0 BRSK1--HSPD1P15/CDH18 frameshift BRSK1 NA HSPD1P15 CDH18 Kinase, TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 CCND3--AMPD3 other CCND3 NA AMPD3 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 CCND3--PTCRA other CCND3 NA PTCRA NA CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 CD44--OFCC1 frameshift CD44 NA OFCC1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 CDC5L--AL135908.1 frameshift CDC5L NA AL135908.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 CDC5L--AL135908.1 other CDC5L NA AL135908.1 NA TranscriptionFactor NA NA NA NA STARFUSION 1 PT_9PJR0ZK7 +BS_KE56MMY0 CELF1--ETV7 other CELF1 NA ETV7 NA NA TranscriptionFactor NA NA NA STARFUSION 1 PT_9PJR0ZK7 +BS_KE56MMY0 DDR2--ATF6 other DDR2 NA ATF6 NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase TranscriptionFactor NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 EIF3D--DNAL4 frameshift EIF3D NA DNAL4 NA NA Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 GATAD2B--UCK2 other GATAD2B NA UCK2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 LHFPL2--TERT/MIR4457 frameshift LHFPL2 NA TERT MIR4457 NA CosmicCensus, Oncogene, Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 LINC01980--POU2F1 other LINC01980 NA POU2F1 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 LMNA--AL590483.2/C1orf100 other LMNA NA AL590483.2 C1orf100 CosmicCensus NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 MEF2D--ANGPTL1 other MEF2D NA ANGPTL1 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 NFKBIE--GPR156 frameshift NFKBIE NA GPR156 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 NUP98--NFKBIE other NUP98 NA NFKBIE NA TumorSuppressorGene, CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 OFCC1--CD44 other OFCC1 NA CD44 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 PI4KB--ASH1L frameshift PI4KB NA ASH1L NA Kinase TranscriptionFactor NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 PI4KB--ASH1L other PI4KB NA ASH1L NA Kinase TranscriptionFactor NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 PTPRH--CDH10/AC091893.1 frameshift PTPRH NA CDH10 AC091893.1 Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 RAF1--SEMA5A other RAF1 NA SEMA5A NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 RALGPS2--PRRX1 other RALGPS2 NA PRRX1 NA Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_9PJR0ZK7 +BS_KE56MMY0 RHOA--CD200R1 other RHOA NA CD200R1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 RSPH9--STK38/SRSF3 other RSPH9 NA STK38 SRSF3 NA Kinase NA CosmicCensus, Oncogene NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 SLX4--PRKCB other SLX4 NA PRKCB NA TumorSuppressorGene TumorSuppressorGene, CosmicCensus, Kinase NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 SMG5--DDR2 in-frame SMG5 NA DDR2 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 SMYD3--AL355860.1 other SMYD3 NA AL355860.1 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 SRF--NOMO2 frameshift SRF NA NOMO2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 VPS53--TACC2 frameshift VPS53 NA TACC2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KE56MMY0 ZBTB20--LINC02044 other ZBTB20 NA LINC02044 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9PJR0ZK7 +BS_KEA474HN KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_EQ5C5TEA +BS_KEA474HN MYT1L--MYT1L frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_EQ5C5TEA +BS_KEA474HN RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_EQ5C5TEA +BS_KF0ZXDER PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_CX58G6P6 +BS_KF0ZXDER SCARA5--CACNA2D3 frameshift SCARA5 NA CACNA2D3 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_CX58G6P6 +BS_KM2EX0K6 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PAW18EK3 +BS_KN92S7YQ AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_HEGTYPQJ +BS_KN92S7YQ JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_HEGTYPQJ +BS_KN92S7YQ PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_HEGTYPQJ +BS_KN92S7YQ ZNF486--NCOR1 other ZNF486 NA NCOR1 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_HEGTYPQJ +BS_KND4B5CW ATP6V0E2--LINC01510/MET frameshift ATP6V0E2 NA LINC01510 MET NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA ARRIBA 1 PT_2NQPX1R2 +BS_KP735TJ6 TPM3--NTRK1 frameshift TPM3 NA NTRK1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_MSQ6GSVP +BS_KPT2WPHW AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_CR2YBSPT +BS_KPT2WPHW AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_CR2YBSPT +BS_KPT2WPHW CNTN4--CNTN4 in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CR2YBSPT +BS_KPT2WPHW CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CR2YBSPT +BS_KPT2WPHW DCLK2--DCLK2 frameshift DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_CR2YBSPT +BS_KPT2WPHW ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CR2YBSPT +BS_KPT2WPHW FPGT-TNNI3K--FPGT-TNNI3K frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_CR2YBSPT +BS_KPT2WPHW KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CR2YBSPT +BS_KPT2WPHW KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CR2YBSPT +BS_KPT2WPHW KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CR2YBSPT +BS_KPT2WPHW POU6F2--POU6F2 frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_CR2YBSPT +BS_KPT2WPHW TNNI3K--TNNI3K frameshift TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_CR2YBSPT +BS_KQ6ZW085 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_SSE4AH59 +BS_KQ6ZW085 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_SSE4AH59 +BS_KQ6ZW085 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_SSE4AH59 +BS_KQ6ZW085 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_SSE4AH59 +BS_KQ6ZW085 FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_SSE4AH59 +BS_KQ6ZW085 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_SSE4AH59 +BS_KQ6ZW085 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_SSE4AH59 +BS_KQ6ZW085 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_SSE4AH59 +BS_KR4MP5ET FAM118B--YAP1/AP000942.1 other FAM118B NA YAP1 AP000942.1 NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_AQWDQW27 +BS_KR4MP5ET PKNOX2--AP003086.2 other PKNOX2 NA AP003086.2 NA TranscriptionFactor NA NA NA NA ARRIBA, STARFUSION 2 PT_AQWDQW27 +BS_KR4MP5ET YAP1--FAM118B in-frame YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_AQWDQW27 +BS_KR4MP5ET YAP1--FAM118B frameshift YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_AQWDQW27 +BS_KR4MP5ET YAP1--FAM118B other YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA STARFUSION 1 PT_AQWDQW27 +BS_KSKZ9J7J CXXC5--MN1 other CXXC5 NA MN1 NA TumorSuppressorGene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_80NVYCBS +BS_KSKZ9J7J MN1--AC008667.1 frameshift MN1 NA AC008667.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_80NVYCBS +BS_KSKZ9J7J MN1--PSD2 in-frame MN1 NA PSD2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_80NVYCBS +BS_KVNGNETA AC092691.1--LSAMP/RNU6-1200P other AC092691.1 NA LSAMP RNU6-1200P NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_GGCQAGPS +BS_KVNGNETA JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_GGCQAGPS +BS_KVNGNETA NOC4L--PNCK in-frame NOC4L NA PNCK NA NA Kinase NA NA NA ARRIBA 1 PT_GGCQAGPS +BS_KVNGNETA POU6F2--POU6F2 frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GGCQAGPS +BS_KVNGNETA SPOP--LINC02141/AC018554.2 frameshift SPOP NA LINC02141 AC018554.2 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_GGCQAGPS +BS_KVV7001W CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_E8XM8JFZ +BS_KX6J8TRK AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_XA8ASFJK +BS_KX6J8TRK AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_XA8ASFJK +BS_KX6J8TRK DNAH9--DNAH9 frameshift DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XA8ASFJK +BS_KX6J8TRK ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XA8ASFJK +BS_KX6J8TRK KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_XA8ASFJK +BS_KX6J8TRK KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_XA8ASFJK +BS_KX6J8TRK KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XA8ASFJK +BS_KX6J8TRK ROBO2--ROBO2 frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_XA8ASFJK +BS_KXH37MPN MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_AP9P5D7N +BS_KXMYBQ6N RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_0WKX8Q5X +BS_KYF0Q0E7 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_5FR2YA6E +BS_KYF0Q0E7 BCAS3--SEL1L3 frameshift BCAS3 NA SEL1L3 NA Oncogene NA NA NA NA ARRIBA 1 PT_5FR2YA6E +BS_KYF0Q0E7 BCAS3--SEL1L3 in-frame BCAS3 NA SEL1L3 NA Oncogene NA NA NA NA ARRIBA 1 PT_5FR2YA6E +BS_KYF0Q0E7 BCAS3--SMIM20 frameshift BCAS3 NA SMIM20 NA Oncogene NA NA NA NA ARRIBA 1 PT_5FR2YA6E +BS_KZPR01BD ALKBH5--MAP4 frameshift ALKBH5 NA MAP4 NA NA Oncogene NA NA NA ARRIBA 1 PT_3873YK5S +BS_KZPR01BD ALKBH5--MAP4 other ALKBH5 NA MAP4 NA NA Oncogene NA NA NA STARFUSION 1 PT_3873YK5S +BS_KZPR01BD CAMTA1--SH3PXD2B frameshift CAMTA1 NA SH3PXD2B NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_3873YK5S +BS_KZPR01BD EWSR1--PLAGL1 in-frame EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_3873YK5S +BS_KZPR01BD EWSR1--PLAGL1 frameshift EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_3873YK5S +BS_KZPR01BD EWSR1--PLAGL1 other EWSR1 NA PLAGL1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_3873YK5S +BS_KZPR01BD MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_3873YK5S +BS_KZPR01BD RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_3873YK5S +BS_KZPR01BD RN7SL2--IGF2 other RN7SL2 NA IGF2 NA NA Oncogene NA NA NA STARFUSION 1 PT_3873YK5S +BS_KZPR01BD SLC9A1--CXXC5 frameshift SLC9A1 NA CXXC5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_3873YK5S +BS_KZPR01BD ZNF57--SF3A2 in-frame ZNF57 NA SF3A2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_3873YK5S +BS_M0QYNVK8 ABR--ZZEF1 in-frame ABR NA ZZEF1 NA Oncogene NA NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_M0QYNVK8 ATRX--Z83820.1 frameshift ATRX NA Z83820.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_M0QYNVK8 CADM2--CADM2 frameshift CADM2 NA CADM2 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_M0QYNVK8 CRK--ITGAE frameshift CRK NA ITGAE NA Oncogene NA NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_M0QYNVK8 CRK--ITGAE in-frame CRK NA ITGAE NA Oncogene NA NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_M0QYNVK8 DENND5A--DLG1 frameshift DENND5A NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_M0QYNVK8 KIT--LINC02465 frameshift KIT NA LINC02465 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_M0QYNVK8 ME2--AC026898.1/SMAD2 frameshift ME2 NA AC026898.1 SMAD2 NA NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA ARRIBA 1 PT_37B5JRP1 +BS_M0QYNVK8 NCOR1--AC006236.1 other NCOR1 NA AC006236.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_M0QYNVK8 NCOR1--YWHAE in-frame NCOR1 NA YWHAE NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_M0QYNVK8 NRF1--TFR2 frameshift NRF1 NA TFR2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_M0QYNVK8 RPA1--SMTNL2 in-frame RPA1 NA SMTNL2 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_M0QYNVK8 SMAD2--MRO other SMAD2 NA MRO NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_37B5JRP1 +BS_M0QYNVK8 SNAPC3--ELF5 frameshift SNAPC3 NA ELF5 NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_M0QYNVK8 YWHAE--NLRP1 frameshift YWHAE NA NLRP1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_M0QYNVK8 YWHAE--NLRP1 other YWHAE NA NLRP1 NA CosmicCensus, Oncogene NA NA NA NA STARFUSION 1 PT_37B5JRP1 +BS_M0QYNVK8 ZZEF1--USP6 in-frame ZZEF1 NA USP6 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_M15PW2N0 FP236383.1--ZNF704 other FP236383.1 NA ZNF704 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_S4A0R1PM +BS_M15PW2N0 SMAD4/AC090330.1--LINC01630 other SMAD4 AC090330.1 LINC01630 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_S4A0R1PM +BS_M1PVEHCM AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KBDP8ZCR +BS_M1PVEHCM AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_KBDP8ZCR +BS_M1PVEHCM ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_KBDP8ZCR +BS_M1PVEHCM FPGT-TNNI3K--FPGT-TNNI3K frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_KBDP8ZCR +BS_M1PVEHCM KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_KBDP8ZCR +BS_M1PVEHCM KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_KBDP8ZCR +BS_M1PVEHCM KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_KBDP8ZCR +BS_M1PVEHCM TNNI3K--TNNI3K frameshift TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_KBDP8ZCR +BS_M1T1K5WV AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_C94VR1Y2 +BS_M1T1K5WV AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_C94VR1Y2 +BS_M1T1K5WV EEA1--RNU6-1329P/LINC02413 frameshift EEA1 NA RNU6-1329P LINC02413 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_C94VR1Y2 +BS_M1T1K5WV KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_C94VR1Y2 +BS_M1T1K5WV KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_C94VR1Y2 +BS_M1T1K5WV KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_C94VR1Y2 +BS_M4NVX721 AC092747.1/STK38L--MED21 other AC092747.1 STK38L MED21 NA NA NA Oncogene, Kinase NA NA ARRIBA 1 PT_FWD7NZQ0 +BS_M4NVX721 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_FWD7NZQ0 +BS_M4NVX721 ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_FWD7NZQ0 +BS_M4NVX721 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_FWD7NZQ0 +BS_M4NVX721 EPHA5--EPHA5 in-frame EPHA5 NA EPHA5 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_FWD7NZQ0 +BS_M4NVX721 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_FWD7NZQ0 +BS_M4NVX721 JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_FWD7NZQ0 +BS_M4NVX721 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_FWD7NZQ0 +BS_M4NVX721 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_FWD7NZQ0 +BS_M4NVX721 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_FWD7NZQ0 +BS_M4NVX721 MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_FWD7NZQ0 +BS_M4NVX721 PRDM2--PRDM2 frameshift PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_FWD7NZQ0 +BS_M4NVX721 ROBO2--ROBO2 frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_FWD7NZQ0 +BS_M4NVX721 ZNF385D--ZNF385D in-frame ZNF385D NA ZNF385D NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_FWD7NZQ0 +BS_M4TTKPNR CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_YKVK5HTK +BS_M4TTKPNR KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_YKVK5HTK +BS_M7HCF7DW CLIP1--ROS1 in-frame CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_2WVW55DA +BS_M7QJ8VF0 GPC5--MIR17HG/GPC5 frameshift GPC5 NA MIR17HG GPC5 TumorSuppressorGene, CosmicCensus, Oncogene NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA ARRIBA 1 PT_QD6KKKJH +BS_M85CXHDV CEBPG--RHPN2 other CEBPG NA RHPN2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_6PP78VNE +BS_M85CXHDV EPHA3--TSKU in-frame EPHA3 NA TSKU NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_6PP78VNE +BS_M85CXHDV ROBO2--MTCYBP27/RNU6-976P frameshift ROBO2 NA MTCYBP27 RNU6-976P CosmicCensus NA NA NA NA ARRIBA 1 PT_6PP78VNE +BS_M85CXHDV TRIM24--RSAD1/AC021491.1 other TRIM24 NA RSAD1 AC021491.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_6PP78VNE +BS_M86ECPHK DSTYK--TNFRSF13C frameshift DSTYK NA TNFRSF13C NA Kinase NA NA NA NA ARRIBA 1 PT_74XM7BV7 +BS_M8EA6R2A CABLES1--LAMA3 frameshift CABLES1 NA LAMA3 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_4347ZBEX +BS_M8EA6R2A FLJ31104/AC008892.1--POU6F1 other FLJ31104 AC008892.1 POU6F1 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_4347ZBEX +BS_M8EA6R2A POU6F1--FLJ31104/AC008892.1 other POU6F1 NA FLJ31104 AC008892.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_4347ZBEX +BS_M8M56Z4Y C1orf61--PCDHGC3 in-frame C1orf61 NA PCDHGC3 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_K30AWQ8A +BS_M8M56Z4Y KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_K30AWQ8A +BS_MA1A3GY0 SATB2--STAG2 in-frame SATB2 NA STAG2 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_4XWYZYJS +BS_MA1A3GY0 STAG2--SATB2 other STAG2 NA SATB2 NA CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_4XWYZYJS +BS_MA2T7ET1 ERC2--ERC2 frameshift ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_1Z015H6V +BS_MB7WN0ZB ZEB2--ZEB2 frameshift ZEB2 NA ZEB2 NA Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_5BWZA0NT +BS_MB7WN0ZB ZEB2--ZEB2 other ZEB2 NA ZEB2 NA Oncogene, TranscriptionFactor Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_5BWZA0NT +BS_MBSTWZA6 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_9C2G356W +BS_MBSTWZA6 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_9C2G356W +BS_ME3HKN2C AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_3WA1XB8G +BS_ME3HKN2C ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3WA1XB8G +BS_ME3HKN2C GYG2--SRY/RNASEH2CP1 frameshift GYG2 NA SRY RNASEH2CP1 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_3WA1XB8G +BS_ME3HKN2C RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_3WA1XB8G +BS_MF47B9ZW AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_7F485CXV +BS_MF47B9ZW ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7F485CXV +BS_MF47B9ZW KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_7F485CXV +BS_MF47B9ZW KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_7F485CXV +BS_MF47B9ZW KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7F485CXV +BS_MF9X3PKH KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_XXZHRPNM +BS_MF9X3PKH RFX4--RFX4 in-frame RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_XXZHRPNM +BS_MGAMKKBD MAPK13--DDX60L other MAPK13 NA DDX60L NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_6R7AE0P3 +BS_MGAMKKBD TNFAIP3--NCF2 other TNFAIP3 NA NCF2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_6R7AE0P3 +BS_MKM0EEN1 AK3--DMRT1 frameshift AK3 NA DMRT1 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_W4XVT4AJ +BS_MKM0EEN1 FANCC--FANCC in-frame FANCC NA FANCC NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_W4XVT4AJ +BS_MKM0EEN1 MAP2--MAP2 in-frame MAP2 NA MAP2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_W4XVT4AJ +BS_MKM0EEN1 ZNF423--OGFOD1 frameshift ZNF423 NA OGFOD1 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_W4XVT4AJ +BS_MKM0EEN1 ZNF727/TRIM60P17--ZNF727 other ZNF727 TRIM60P17 ZNF727 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_W4XVT4AJ +BS_MKP2Y41Z RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_3R0P995B +BS_MM20BVW9 CPQ--ZNF774 frameshift CPQ NA ZNF774 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_JXSDFPNM +BS_MM20BVW9 ZNF224--CDC14C/AC091730.1 frameshift ZNF224 NA CDC14C AC091730.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_JXSDFPNM +BS_MMNRZ1EQ RN7SK--RMRP other RN7SK NA RMRP NA NA Oncogene NA NA NA STARFUSION 1 PT_WG2Z95B5 +BS_MN5XVP5A AL157937.1/DMRTA1--LINC01239 other AL157937.1 DMRTA1 LINC01239 NA NA NA TranscriptionFactor NA NA ARRIBA 1 PT_RPC00TAJ +BS_MN5XVP5A APIP--EHF frameshift APIP NA EHF NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_MN5XVP5A ATF7IP--LINC02484/AC093689.1 frameshift ATF7IP NA LINC02484 AC093689.1 Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_MN5XVP5A BICD1--PACRG frameshift BICD1 NA PACRG NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_MN5XVP5A DCHS1--ABTB2 in-frame DCHS1 NA ABTB2 NA NA Oncogene NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_MN5XVP5A DLG1--LINC01063 frameshift DLG1 NA LINC01063 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_MN5XVP5A HIVEP3--HTR1D/AL109936.1 other HIVEP3 NA HTR1D AL109936.1 TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_MN5XVP5A MTMR3--PDE7B other MTMR3 NA PDE7B NA Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_MN5XVP5A MTMR3--TRMT11 frameshift MTMR3 NA TRMT11 NA Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_MN5XVP5A MTOR--PEX14 frameshift MTOR NA PEX14 NA CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_MN5XVP5A PEX14--UBIAD1 frameshift PEX14 NA UBIAD1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_MN5XVP5A STIM1--DLG1 in-frame STIM1 NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_MN5XVP5A ZNF730--ATF7IP frameshift ZNF730 NA ATF7IP NA TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_MQCKXD60 ASXL2--ASXL2 frameshift ASXL2 NA ASXL2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_FCM7XPVR +BS_MQCKXD60 ATF2--AC104088.1/AC078883.4 frameshift ATF2 NA AC104088.1 AC078883.4 Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_FCM7XPVR +BS_MQCKXD60 C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_FCM7XPVR +BS_MQCKXD60 DNMT3A--LRP1B frameshift DNMT3A NA LRP1B NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_FCM7XPVR +BS_MQCKXD60 MYT1L--LINC01115 other MYT1L NA LINC01115 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_FCM7XPVR +BS_MT15SGJN C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_99S5BPE3 +BS_MT15SGJN RAD9A--LRRC4C other RAD9A NA LRRC4C NA Oncogene NA NA NA NA ARRIBA 1 PT_99S5BPE3 +BS_MV6ASWV9 AUTS2--ELK3 frameshift AUTS2 NA ELK3 NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_ESHACWF6 +BS_MV6ASWV9 CDCP1--SRGAP1 in-frame CDCP1 NA SRGAP1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_ESHACWF6 +BS_MV6ASWV9 DYRK1A--AC092155.1 frameshift DYRK1A NA AC092155.1 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_ESHACWF6 +BS_MV6ASWV9 DYRK1A--AC092155.1 other DYRK1A NA AC092155.1 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_ESHACWF6 +BS_MV6ASWV9 TFDP1--FAM122C frameshift TFDP1 NA FAM122C NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ESHACWF6 +BS_MV6ASWV9 TFDP1--PLAC1 frameshift TFDP1 NA PLAC1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ESHACWF6 +BS_MV6ASWV9 ZNF428--RNF128 frameshift ZNF428 NA RNF128 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ESHACWF6 +BS_MVW01FPB PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3KM9W8S8 +BS_MX23ZY0Y ADGRL3--NFXL1 frameshift ADGRL3 NA NFXL1 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_MX23ZY0Y ASCC1--CCAR1 in-frame ASCC1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_MX23ZY0Y ASCC1--CCAR1 frameshift ASCC1 NA CCAR1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_MX23ZY0Y ASCC1--CTNNA3 frameshift ASCC1 NA CTNNA3 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_MX23ZY0Y CTBP2--CCAR1 other CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA ARRIBA, STARFUSION 2 PT_Y5KY6KN9 +BS_MX23ZY0Y FAM155A--SPRY2 frameshift FAM155A NA SPRY2 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_MX23ZY0Y LINC01515--PCGF6 other LINC01515 NA PCGF6 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_MX23ZY0Y MOB2/DUSP8--NUP98 other MOB2 DUSP8 NUP98 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_MX23ZY0Y NUP98--PRMT3/HMGB1P40 frameshift NUP98 NA PRMT3 HMGB1P40 TumorSuppressorGene, CosmicCensus, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_MX23ZY0Y PCGF6--LINC01515 frameshift PCGF6 NA LINC01515 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_MX23ZY0Y PTPRJ--MIR8070/USP47 frameshift PTPRJ NA MIR8070 USP47 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_MY9D8XZ1 ADAM12--ADAM12 frameshift ADAM12 NA ADAM12 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_YPCR2XRS +BS_MY9D8XZ1 ERC2--RAF1 in-frame ERC2 NA RAF1 NA Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_YPCR2XRS +BS_MY9D8XZ1 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_YPCR2XRS +BS_N0877CX1 BCR--KIAA1671 frameshift BCR NA KIAA1671 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RRG1V7EP +BS_N1E0H8YQ CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CGPJY881 +BS_N1E0H8YQ KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_CGPJY881 +BS_N1E0H8YQ MYRFL--MYRFL frameshift MYRFL NA MYRFL NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_CGPJY881 +BS_N5B2CZMH SOD2--EIF2AK4 other SOD2 NA EIF2AK4 NA TumorSuppressorGene Kinase NA NA NA ARRIBA 1 PT_3SW2VHD5 +BS_N5DVEJXT C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_VBVZ2NAR +BS_N5DVEJXT LTBP3--AC090559.1 frameshift LTBP3 NA AC090559.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_VBVZ2NAR +BS_N5DVEJXT RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VBVZ2NAR +BS_N6N147BY KAT6A--AC016868.1/GOLGA7 frameshift KAT6A NA AC016868.1 GOLGA7 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_X648RVMK +BS_N6NE6B3W AC093849.1/HAND2--SCRG1 other AC093849.1 HAND2 SCRG1 NA NA NA TranscriptionFactor NA NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W AL359634.1/MCM9--MCM9 other AL359634.1 MCM9 MCM9 NA NA TumorSuppressorGene TumorSuppressorGene NA NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W CDH10--CDH10 frameshift CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W CSMD1--CSMD1 frameshift CSMD1 NA CSMD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W FUT8/AL391261.1--FUT8 other FUT8 AL391261.1 FUT8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W FYN--FYN frameshift FYN NA FYN NA Kinase, Oncogene, Kinase Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W MCM9--MCM9 in-frame MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W MTSS1--MTSS1 frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W PWWP2AP1--SPRY2/RNU6-61P other PWWP2AP1 NA SPRY2 RNU6-61P NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_H0HWHRPB +BS_N6NE6B3W ZSCAN9/ZKSCAN4--ZSCAN9 other ZSCAN9 ZKSCAN4 ZSCAN9 NA TranscriptionFactor TranscriptionFactor TranscriptionFactor NA NA ARRIBA 1 PT_H0HWHRPB +BS_N8J1DP02 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_VE0Q731Y +BS_N8J1DP02 MYO3A--MYO3A frameshift MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_VE0Q731Y +BS_N8J1DP02 RFX4--RFX4 in-frame RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VE0Q731Y +BS_NB42PWZN C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_99S5BPE3 +BS_NB42PWZN RBFOX2--OPCML frameshift RBFOX2 NA OPCML NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_99S5BPE3 +BS_NB42PWZN SOX5--DUSP16 frameshift SOX5 NA DUSP16 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_99S5BPE3 +BS_NB5XWMJT BRINP1--BRINP1 frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_ZR8MQRVG +BS_NB5XWMJT KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_ZR8MQRVG +BS_NB5XWMJT RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ZR8MQRVG +BS_NB9XXBW6 ZNF221--CTNNA1 other ZNF221 NA CTNNA1 NA TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_WGVEF96B +BS_NDFDQBCZ HMGA2--NCOR2 in-frame HMGA2 NA NCOR2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_QPY0H50V +BS_NDFDQBCZ NCOR2--HMGA2 in-frame NCOR2 NA HMGA2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_QPY0H50V +BS_NDN62H0S AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_124TTG01 +BS_NDN62H0S MYT1L--MYT1L frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_124TTG01 +BS_NDN62H0S NRG1-IT1--NRG1 other NRG1-IT1 NA NRG1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_124TTG01 +BS_NDN62H0S RMRP--AL139099.5 other RMRP NA AL139099.5 NA Oncogene NA NA NA NA STARFUSION 1 PT_124TTG01 +BS_NDN62H0S RMRP--RN7SL1 other RMRP NA RN7SL1 NA Oncogene NA NA NA NA STARFUSION 1 PT_124TTG01 +BS_NDRDM2A9 KDM6A--KDM6A frameshift KDM6A NA KDM6A NA TumorSuppressorGene, CosmicCensus, Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_PZVE3FWF +BS_NFRXNAFE ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_RXT6KRR6 +BS_NFRXNAFE JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RXT6KRR6 +BS_NGHK9RZP AL139099.5--IGF2 other AL139099.5 NA IGF2 NA NA Oncogene NA NA NA STARFUSION 1 PT_2SCVQ2N6 +BS_NGHK9RZP BCORL1--BEND2 other BCORL1 NA BEND2 NA TumorSuppressorGene, CosmicCensus NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_2SCVQ2N6 +BS_NGHK9RZP DNAH9--DNAH9 frameshift DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP EIF3J-AS1--ID3/MDS2 other EIF3J-AS1 NA ID3 MDS2 NA CosmicCensus, Oncogene NA CosmicCensus, Oncogene NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP MAP3K4--MAP3K4 frameshift MAP3K4 NA MAP3K4 NA Kinase, TumorSuppressorGene, Kinase Kinase, TumorSuppressorGene, Kinase NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP MAST4--MAST4 in-frame MAST4 NA MAST4 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP N4BP2--N4BP2 frameshift N4BP2 NA N4BP2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP NCOA6--NCOA6 frameshift NCOA6 NA NCOA6 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP NEK10--NEK10 frameshift NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP NUP214--NUP214 in-frame NUP214 NA NUP214 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP PTPRU--AL807740.1 frameshift PTPRU NA AL807740.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP PTPRU--AL928596.1/AL807740.1 frameshift PTPRU NA AL928596.1 AL807740.1 Oncogene NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGHK9RZP RN7SL1--IGF2 other RN7SL1 NA IGF2 NA NA Oncogene NA NA NA STARFUSION 1 PT_2SCVQ2N6 +BS_NGHK9RZP TP53BP1--PRR32/Z82209.1 frameshift TP53BP1 NA PRR32 Z82209.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_2SCVQ2N6 +BS_NGSG2KB6 DENND1B--NEK7 frameshift DENND1B NA NEK7 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_KTRJ8TFY +BS_NGSG2KB6 DUX4L2/DUX4--AC124017.1 other DUX4L2 DUX4 AC124017.1 NA NA NA Oncogene, TranscriptionFactor NA NA ARRIBA 1 PT_KTRJ8TFY +BS_NGSG2KB6 FAM200B--SOGA1 frameshift FAM200B NA SOGA1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KTRJ8TFY +BS_NGSG2KB6 LNX1--RNF216 in-frame LNX1 NA RNF216 NA NA Oncogene NA NA NA ARRIBA 1 PT_KTRJ8TFY +BS_NGSG2KB6 RBBP8--HNRNPH1 other RBBP8 NA HNRNPH1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_KTRJ8TFY +BS_NGSG2KB6 SNRPN--UBE3A other SNRPN NA UBE3A NA NA Oncogene NA NA NA ARRIBA 1 PT_KTRJ8TFY +BS_NGSG2KB6 SOX6--C11orf58 other SOX6 NA C11orf58 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KTRJ8TFY +BS_NGSG2KB6 UROS--PSAP frameshift UROS NA PSAP NA NA Oncogene NA NA NA ARRIBA 1 PT_KTRJ8TFY +BS_NGSG2KB6 ZNF207--AC090616.2 other ZNF207 NA AC090616.2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KTRJ8TFY +BS_NGSG2KB6 ZNF207--AC090616.5 other ZNF207 NA AC090616.5 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KTRJ8TFY +BS_NGSG2KB6 ZNF207--U91319.1 frameshift ZNF207 NA U91319.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_KTRJ8TFY +BS_NH7K4CD9 CNNM2--BMPR1B frameshift CNNM2 NA BMPR1B NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_ZD45GXZ0 +BS_NH7K4CD9 GSK3B--LINC02485/U6 frameshift GSK3B NA LINC02485 U6 Kinase, TumorSuppressorGene, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_ZD45GXZ0 +BS_NH7K4CD9 NFIA--PATJ frameshift NFIA NA PATJ NA TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_ZD45GXZ0 +BS_NH7K4CD9 NFIA--TM2D1 in-frame NFIA NA TM2D1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_ZD45GXZ0 +BS_NH7K4CD9 ROR1--AP001360.2/TRIM29 frameshift ROR1 NA AP001360.2 TRIM29 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_ZD45GXZ0 +BS_NJ4WPQVK AL024498.2--DST other AL024498.2 NA DST NA NA Oncogene NA NA NA ARRIBA 1 PT_EV71W1JW +BS_NJ4WPQVK ATRX--CYLC1 frameshift ATRX NA CYLC1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_EV71W1JW +BS_NJ4WPQVK CHCHD3--EXOC4 in-frame CHCHD3 NA EXOC4 NA TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_EV71W1JW +BS_NJ4WPQVK HEYL--RACK1 frameshift HEYL NA RACK1 NA TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_EV71W1JW +BS_NJ4WPQVK NCOR1--DNAH9 in-frame NCOR1 NA DNAH9 NA CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_EV71W1JW +BS_NJ4WPQVK RAP1B--NT5DC3 other RAP1B NA NT5DC3 NA Oncogene NA NA NA NA ARRIBA 1 PT_EV71W1JW +BS_NJ4WPQVK TMEM14B--DST frameshift TMEM14B NA DST NA NA Oncogene NA NA NA ARRIBA 1 PT_EV71W1JW +BS_NJ4WPQVK TP53--PSMG4 other TP53 NA PSMG4 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_EV71W1JW +BS_NJ4WPQVK TSC22D1--P2RY14 frameshift TSC22D1 NA P2RY14 NA TumorSuppressorGene, TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_EV71W1JW +BS_NJ4WPQVK WDR70--CTNND2 in-frame WDR70 NA CTNND2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_EV71W1JW +BS_NJ4WPQVK ZNF451--CPNE5 in-frame ZNF451 NA CPNE5 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_EV71W1JW +BS_NKEAAFMW ZNF100--PIP4K2A other ZNF100 NA PIP4K2A NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_T03AT4BJ +BS_NKRYMHEP ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_RT1J9P8J +BS_NKRYMHEP JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RT1J9P8J +BS_NKRYMHEP MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RT1J9P8J +BS_NKRYMHEP SNCAIP--SNCAIP frameshift SNCAIP NA SNCAIP NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_RT1J9P8J +BS_NKRYMHEP ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RT1J9P8J +BS_NKRYMHEP WNK3--WNK3 in-frame WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_RT1J9P8J +BS_NPQJ20KX KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_6MWPJ96F +BS_NQB91P48 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_C1M4YF1R +BS_NQB91P48 PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_C1M4YF1R +BS_NQFH3GZH RMRP--7SK other RMRP NA 7SK NA Oncogene NA NA NA NA STARFUSION 1 PT_6PYNBA9C +BS_NR3P3GN2 ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_DJ106XYS +BS_NR9FRY5T ZEB2--ARHGAP15 frameshift ZEB2 NA ARHGAP15 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_YDWBWTVN +BS_NRFQEQKP CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_3RN24N9X +BS_NRFQEQKP KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_3RN24N9X +BS_NRFQEQKP NRCAM--ZNF532 in-frame NRCAM NA ZNF532 NA TumorSuppressorGene, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_3RN24N9X +BS_NRPG5K4K AL359634.1/MCM9--MCM9 other AL359634.1 MCM9 MCM9 NA NA TumorSuppressorGene TumorSuppressorGene NA NA ARRIBA 1 PT_962TCBVR +BS_NRPG5K4K CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_962TCBVR +BS_NRPG5K4K KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_962TCBVR +BS_NRPG5K4K RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_962TCBVR +BS_NT9NZYFD AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_FC0EF5ZT +BS_NT9NZYFD AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_FC0EF5ZT +BS_NT9NZYFD CREB3L2--TMEM178B frameshift CREB3L2 NA TMEM178B NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_FC0EF5ZT +BS_NT9NZYFD EPHA5--EPHA5 in-frame EPHA5 NA EPHA5 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_FC0EF5ZT +BS_NT9NZYFD ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_FC0EF5ZT +BS_NT9NZYFD FRK--FRK/NT5DC1 frameshift FRK NA FRK NT5DC1 Kinase, TumorSuppressorGene, Kinase Kinase, TumorSuppressorGene, Kinase NA NA NA ARRIBA 1 PT_FC0EF5ZT +BS_NT9NZYFD KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_FC0EF5ZT +BS_NT9NZYFD KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_FC0EF5ZT +BS_NT9NZYFD KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_FC0EF5ZT +BS_NT9NZYFD POU6F2--POU6F2 frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_FC0EF5ZT +BS_NT9NZYFD RMRP--7SK other RMRP NA 7SK NA Oncogene NA NA NA NA STARFUSION 1 PT_FC0EF5ZT +BS_NT9NZYFD RMRP--AL139099.5 other RMRP NA AL139099.5 NA Oncogene NA NA NA NA STARFUSION 1 PT_FC0EF5ZT +BS_NT9NZYFD RMRP--RN7SL1 other RMRP NA RN7SL1 NA Oncogene NA NA NA NA STARFUSION 1 PT_FC0EF5ZT +BS_NT9NZYFD TTC39B--TTC39B in-frame TTC39B NA TTC39B NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_FC0EF5ZT +BS_NVKGSMXS AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DA4WFQ96 +BS_NVKGSMXS ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DA4WFQ96 +BS_NVKGSMXS KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DA4WFQ96 +BS_NVKGSMXS KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DA4WFQ96 +BS_NYS8TRCB AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_76Q72M5T +BS_NYS8TRCB AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_76Q72M5T +BS_NYS8TRCB CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_76Q72M5T +BS_NYS8TRCB ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_76Q72M5T +BS_NYS8TRCB KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_76Q72M5T +BS_NYS8TRCB KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_76Q72M5T +BS_NYS8TRCB KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_76Q72M5T +BS_NYS8TRCB RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_76Q72M5T +BS_NZ71XCG3 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_7FQ6VECA +BS_NZ71XCG3 PWWP2AP1--SPRY2/RNU6-61P other PWWP2AP1 NA SPRY2 RNU6-61P NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_7FQ6VECA +BS_NZ71XCG3 SNCAIP--MGC32805/LINC02201 frameshift SNCAIP NA MGC32805 LINC02201 Oncogene NA NA NA NA ARRIBA 1 PT_7FQ6VECA +BS_NZ71XCG3 ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_7FQ6VECA +BS_P0QF87WC ATF6--RPL31P13/AL592402.1 frameshift ATF6 NA RPL31P13 AL592402.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_P0QF87WC EXOC4--CHCHD3 frameshift EXOC4 NA CHCHD3 NA Oncogene TranscriptionFactor NA NA TCGAFusion ARRIBA 1 PT_8GN3TQRM +BS_P0QF87WC EXOC4--CHCHD3 in-frame EXOC4 NA CHCHD3 NA Oncogene TranscriptionFactor NA NA TCGAFusion ARRIBA 1 PT_8GN3TQRM +BS_P0QF87WC KLHL7--RNF216 frameshift KLHL7 NA RNF216 NA NA Oncogene NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_P0QF87WC MIR3141/MIR1303--VCAN other MIR3141 MIR1303 VCAN NA NA Oncogene NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_P0QF87WC NTRK3--NTRK3 frameshift NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_P0W5VJH4 DNAH9--DNAH9 frameshift DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DH8A0SNQ +BS_P0W5VJH4 NEK10--NEK10 in-frame NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_DH8A0SNQ +BS_P0W5VJH4 PKHD1--PKHD1 frameshift PKHD1 NA PKHD1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DH8A0SNQ +BS_P277RYX5 GATB--NIM1K frameshift GATB NA NIM1K NA NA Kinase NA NA NA ARRIBA 1 PT_Y7F2JZMQ +BS_P39SQPTS MYT1L--MYT1L frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_01MZ62KG +BS_P39SQPTS RMRP--RN7SL2 other RMRP NA RN7SL2 NA Oncogene NA NA NA NA STARFUSION 1 PT_01MZ62KG +BS_P39SQPTS TTYH1--MIR512-2/MIR1323 frameshift TTYH1 NA MIR512-2 MIR1323 Oncogene NA NA NA NA ARRIBA 1 PT_01MZ62KG +BS_P44PE00R ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_APPA7SFD +BS_P44PE00R FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_APPA7SFD +BS_P4D8Y3S8 BCR--MKL1 frameshift BCR NA MKL1 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_F1086Z0A +BS_P4D8Y3S8 HIVEP3--CACNA1I/ENTHD1 other HIVEP3 NA CACNA1I ENTHD1 TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_F1086Z0A +BS_P4D8Y3S8 WBP1L--HIVEP3 frameshift WBP1L NA HIVEP3 NA NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_F1086Z0A +BS_P4NX9MPA KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DFQAH7RS +BS_P78SMRBS ECT2L--ECT2L frameshift ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_YXZPWFVB +BS_P78SMRBS LINC02319--AL118557.1/PTGDR other LINC02319 NA AL118557.1 PTGDR NA NA NA TumorSuppressorGene NA ARRIBA 1 PT_YXZPWFVB +BS_P78SMRBS NEK5--AC090001.1 frameshift NEK5 NA AC090001.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_YXZPWFVB +BS_P78SMRBS PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_YXZPWFVB +BS_P78SMRBS RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_YXZPWFVB +BS_P7EY9DXG PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_H8Z52K09 +BS_P9JP6JFA ASCC1--CTNNA3 frameshift ASCC1 NA CTNNA3 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_P9JP6JFA CTBP2--CCAR1 other CTBP2 NA CCAR1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_P9JP6JFA KCNQ5--COX18 frameshift KCNQ5 NA COX18 NA Oncogene NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_P9JP6JFA NEK1--AC007741.1 other NEK1 NA AC007741.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_Y5KY6KN9 +BS_PEP9NZXN AL359634.1/MCM9--MCM9 other AL359634.1 MCM9 MCM9 NA NA TumorSuppressorGene TumorSuppressorGene NA NA ARRIBA 1 PT_7TEHW6VQ +BS_PEP9NZXN KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_7TEHW6VQ +BS_PEP9NZXN RAB6A--SRF in-frame RAB6A NA SRF NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_7TEHW6VQ +BS_PEP9NZXN SRF--RAB6A other SRF NA RAB6A NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7TEHW6VQ +BS_PEP9NZXN WNK3--WNK3 in-frame WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_7TEHW6VQ +BS_PGHK1JRW BCR--MIF frameshift BCR NA MIF NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_TV5DYHNC +BS_PGHK1JRW ERC1--EPB41 in-frame ERC1 NA EPB41 NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA ARRIBA 1 PT_TV5DYHNC +BS_PGK832G2 CREB1--SPAG16 frameshift CREB1 NA SPAG16 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_VTM2STE3 +BS_PGK832G2 CREB1--SPAG16 other CREB1 NA SPAG16 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_VTM2STE3 +BS_PGK832G2 DYNC1H1--B2M frameshift DYNC1H1 NA B2M NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_VTM2STE3 +BS_PJPGVD62 ERBB4--ERBB4 frameshift ERBB4 NA ERBB4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_ZZRBX5JT +BS_PJPGVD62 MDM2--HNRNPA1 other MDM2 NA HNRNPA1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_ZZRBX5JT +BS_PK18H7E7 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2YT37G8P +BS_PK18H7E7 FGFR1--AC123767.1 other FGFR1 NA AC123767.1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_2YT37G8P +BS_PK18H7E7 FGFR1--ADAM3A other FGFR1 NA ADAM3A NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_2YT37G8P +BS_PK18H7E7 GPAT4--NRG1/RNU6-663P frameshift GPAT4 NA NRG1 RNU6-663P NA CosmicCensus NA NA NA ARRIBA 1 PT_2YT37G8P +BS_PK18H7E7 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_2YT37G8P +BS_PKW05VZV ADAM23--SMARCD1/GPD1 other ADAM23 NA SMARCD1 GPD1 Oncogene CosmicCensus NA NA NA ARRIBA 1 PT_279D9QZ8 +BS_PN2CE34A BACH1--QRICH1 frameshift BACH1 NA QRICH1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_54MH6Q46 +BS_PN2CE34A ITGB5--CACNA1D frameshift ITGB5 NA CACNA1D NA NA CosmicCensus NA NA NA ARRIBA 1 PT_54MH6Q46 +BS_PN2CE34A STAG2--OPHN1 frameshift STAG2 NA OPHN1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_54MH6Q46 +BS_PN2CE34A YAP1--FAM118B in-frame YAP1 NA FAM118B NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_54MH6Q46 +BS_PNYN0AYD AFF3--TMEM182 frameshift AFF3 NA TMEM182 NA CosmicCensus, Oncogene NA NA NA TCGAFusion ARRIBA 1 PT_C2D4JXS1 +BS_PNYN0AYD ARFGEF3--EYA4 frameshift ARFGEF3 NA EYA4 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_C2D4JXS1 +BS_PNYN0AYD ERC1--PHBP17 frameshift ERC1 NA PHBP17 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_C2D4JXS1 +BS_PNYN0AYD MNT--PRKDC in-frame MNT NA PRKDC NA TumorSuppressorGene, TranscriptionFactor Kinase NA NA NA ARRIBA 1 PT_C2D4JXS1 +BS_PNYN0AYD NR2F2--AC103996.3 other NR2F2 NA AC103996.3 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_C2D4JXS1 +BS_PNYN0AYD NR2F2--LINC01579 other NR2F2 NA LINC01579 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_C2D4JXS1 +BS_PNYN0AYD PTGIS--AL391117.1 frameshift PTGIS NA AL391117.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_C2D4JXS1 +BS_PNYN0AYD RPGRIP1L--AL009028.1/TBX22 frameshift RPGRIP1L NA AL009028.1 TBX22 NA NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_C2D4JXS1 +BS_PNYN0AYD SEPT7--ELMO1/NECAP1P1 frameshift SEPT7 NA ELMO1 NECAP1P1 NA Oncogene NA NA NA ARRIBA 1 PT_C2D4JXS1 +BS_PNYN0AYD TRIM37--MSI2 frameshift TRIM37 NA MSI2 NA Oncogene CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_C2D4JXS1 +BS_PNYN0AYD ZNF236--FRG1CP/FRG1DP frameshift ZNF236 NA FRG1CP FRG1DP TranscriptionFactor NA NA NA NA ARRIBA 1 PT_C2D4JXS1 +BS_PNYN0AYD ZNF337--WWP2 frameshift ZNF337 NA WWP2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_C2D4JXS1 +BS_PQ6QEVE8 ALK--SPDYA frameshift ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_RGX23JFP +BS_PQ6QEVE8 ALK--SPDYA other ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA STARFUSION 1 PT_RGX23JFP +BS_PQ6QEVE8 PPP1CB--ALK in-frame PPP1CB NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RGX23JFP +BS_PQ6QEVE8 PPP1CB--ALK other PPP1CB NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA STARFUSION 1 PT_RGX23JFP +BS_PQ6QEVE8 SPDYA--ALK other SPDYA NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_RGX23JFP +BS_PQ6QEVE8 SPDYA--ALK in-frame SPDYA NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RGX23JFP +BS_PQ7CQFYR AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_R0M1QBY4 +BS_PQ7CQFYR BRAF--KIAA1549 in-frame BRAF NA KIAA1549 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_R0M1QBY4 +BS_PQ7CQFYR BRAF--KIAA1549 frameshift BRAF NA KIAA1549 NA Kinase, CosmicCensus, Oncogene, Kinase CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_R0M1QBY4 +BS_PQ7CQFYR KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_R0M1QBY4 +BS_PQ7CQFYR KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_R0M1QBY4 +BS_PQ7CQFYR KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_R0M1QBY4 +BS_PQ7CQFYR KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_R0M1QBY4 +BS_PS0P3QJ3 STX5--GRB2 frameshift STX5 NA GRB2 NA NA Oncogene NA NA NA ARRIBA 1 PT_6D9C46GC +BS_PSNBFWQV EWSR1--FLI1 in-frame EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_J50NZYZF +BS_PXCPK5XS ABCA7--ZNF43 frameshift ABCA7 NA ZNF43 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_1B1Z7BRQ +BS_PXCPK5XS PRKN--QKI frameshift PRKN NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_1B1Z7BRQ +BS_PXCPK5XS TAF7--PCDHGC3 other TAF7 NA PCDHGC3 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_1B1Z7BRQ +BS_PXCPK5XS TJP1--UBE3A in-frame TJP1 NA UBE3A NA NA Oncogene NA NA NA ARRIBA 1 PT_1B1Z7BRQ +BS_PXCPK5XS UBE3A--TJP1 frameshift UBE3A NA TJP1 NA Oncogene NA NA NA NA ARRIBA 1 PT_1B1Z7BRQ +BS_PXCPK5XS ZNF438--ZEB1 other ZNF438 NA ZEB1 NA TranscriptionFactor CosmicCensus, TranscriptionFactor NA NA NA ARRIBA 1 PT_1B1Z7BRQ +BS_PZVHMSYN ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_0MJEAART +BS_PZVHMSYN CDH20--CDH20 frameshift CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0MJEAART +BS_PZVHMSYN CREBBP--SMG1 in-frame CREBBP NA SMG1 NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, Kinase NA NA NA ARRIBA 1 PT_0MJEAART +BS_PZVHMSYN CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_0MJEAART +BS_PZVHMSYN ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_0MJEAART +BS_PZVHMSYN THADA--THADA in-frame THADA NA THADA NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0MJEAART +BS_PZVHMSYN ZFX--CXorf58 other ZFX NA CXorf58 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_0MJEAART +BS_Q13FQ8FV ZNF529--CCDC61 other ZNF529 NA CCDC61 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1DSX4VJM +BS_Q2T9ZRM0 SPAG9--ZNF70 frameshift SPAG9 NA ZNF70 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_J4MWGQFQ +BS_Q3TBCK4V CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_BK92NM09 +BS_Q3TBCK4V KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_BK92NM09 +BS_Q5WZYWCT LINC01019--LINC01019/IRX1 other LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA ARRIBA 1 PT_XHYBZKCX +BS_Q79NP5YY KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_4Z34K4XB +BS_Q9V7A95C ADCY3--AC016712.1/ACSL3 other ADCY3 NA AC016712.1 ACSL3 NA NA NA CosmicCensus, Oncogene NA ARRIBA 1 PT_1DRAVX4S +BS_Q9V7A95C ATP2B1--DCN other ATP2B1 NA DCN NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_1DRAVX4S +BS_Q9V7A95C ATP2B1--DCN/AC007115.1 other ATP2B1 NA DCN AC007115.1 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_1DRAVX4S +BS_Q9V7A95C ATP2B1-AS1--DCN/AC007115.1 other ATP2B1-AS1 NA DCN AC007115.1 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_1DRAVX4S +BS_Q9V7A95C DCN/AC007115.1--CCER1 other DCN AC007115.1 CCER1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1DRAVX4S +BS_Q9V7A95C DUSP6--AC078777.1/LINC02421 frameshift DUSP6 NA AC078777.1 LINC02421 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1DRAVX4S +BS_Q9V7A95C DYRK2--AC008033.1/AC008033.2 frameshift DYRK2 NA AC008033.1 AC008033.2 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_1DRAVX4S +BS_Q9V7A95C DYRK2--LINC02384 frameshift DYRK2 NA LINC02384 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_1DRAVX4S +BS_Q9V7A95C DYRK2--Metazoa_SRP/RAP1B frameshift DYRK2 NA Metazoa_SRP RAP1B Kinase, Kinase NA NA Oncogene NA ARRIBA 1 PT_1DRAVX4S +BS_Q9V7A95C NCOA1--NOA1 frameshift NCOA1 NA NOA1 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1DRAVX4S +BS_Q9V7A95C NOA1--NCOA1 other NOA1 NA NCOA1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_1DRAVX4S +BS_QAG1RDXN CLIP1--ROS1 in-frame CLIP1 NA ROS1 NA CosmicCensus CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_2WVW55DA +BS_QB7YGKN1 AL445673.1--PRRX1/MROH9 other AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_9P7P6YAQ +BS_QB7YGKN1 NRCAM--PRKCB frameshift NRCAM NA PRKCB NA TumorSuppressorGene, Oncogene TumorSuppressorGene, CosmicCensus, Kinase NA NA NA ARRIBA 1 PT_9P7P6YAQ +BS_QB7YGKN1 NRCAM--PRKCB in-frame NRCAM NA PRKCB NA TumorSuppressorGene, Oncogene TumorSuppressorGene, CosmicCensus, Kinase NA NA NA STARFUSION 1 PT_9P7P6YAQ +BS_QB84TBA3 CAMK2D--AC097522.1/RNU6-1252P frameshift CAMK2D NA AC097522.1 RNU6-1252P Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_JC4DHFJR +BS_QB84TBA3 PCDH9--FBXW7 frameshift PCDH9 NA FBXW7 NA TumorSuppressorGene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JC4DHFJR +BS_QBR4WCQ2 EWSR1--AC013244.2 other EWSR1 NA AC013244.2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_6PFFSB6D +BS_QBR4WCQ2 EWSR1--ATF1 in-frame EWSR1 NA ATF1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_6PFFSB6D +BS_QBR4WCQ2 RMRP--PKM other RMRP NA PKM NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_6PFFSB6D +BS_QC3XCE6X AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_GB8MNK85 +BS_QC3XCE6X AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_GB8MNK85 +BS_QC3XCE6X CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_GB8MNK85 +BS_QC3XCE6X ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GB8MNK85 +BS_QC3XCE6X KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_GB8MNK85 +BS_QC3XCE6X KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_GB8MNK85 +BS_QC3XCE6X KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GB8MNK85 +BS_QC3XCE6X POU6F2--POU6F2 frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GB8MNK85 +BS_QC3XCE6X PRDM2--PRDM2 frameshift PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GB8MNK85 +BS_QEYPFYHD AC092691.1--LSAMP/RNU6-1200P other AC092691.1 NA LSAMP RNU6-1200P NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_M0AP3Z15 +BS_QEYPFYHD AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_M0AP3Z15 +BS_QEYPFYHD JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_M0AP3Z15 +BS_QEYPFYHD MTSS1--MTSS1 frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_M0AP3Z15 +BS_QEYPFYHD PBRM1--CLSTN2 frameshift PBRM1 NA CLSTN2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M0AP3Z15 +BS_QEYPFYHD RAB31--CBLB/AC079382.1 other RAB31 NA CBLB AC079382.1 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_M0AP3Z15 +BS_QEYPFYHD ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_M0AP3Z15 +BS_QEYPFYHD WDR82--PBRM1 other WDR82 NA PBRM1 NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_M0AP3Z15 +BS_QF5VVZX5 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CGWPWSXM +BS_QH82PBMB KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_JQ45JK94 +BS_QHS3V0GP ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_NESAQHB1 +BS_QHS3V0GP CDK14--CDK14 frameshift CDK14 NA CDK14 NA Kinase Kinase NA NA NA ARRIBA 1 PT_NESAQHB1 +BS_QHS3V0GP CDK14--MKLN1 frameshift CDK14 NA MKLN1 NA Kinase NA NA NA NA ARRIBA 1 PT_NESAQHB1 +BS_QHS3V0GP CDK14--MKLN1 in-frame CDK14 NA MKLN1 NA Kinase NA NA NA NA ARRIBA 1 PT_NESAQHB1 +BS_QHS3V0GP MKLN1--CDK14 frameshift MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_NESAQHB1 +BS_QHS3V0GP RLIM--AL627224.1/FOXR2 other RLIM NA AL627224.1 FOXR2 NA NA NA TranscriptionFactor, Oncogene NA ARRIBA 1 PT_NESAQHB1 +BS_QKT3TJVK AL035413.1--RERE other AL035413.1 NA RERE NA NA Oncogene NA NA NA ARRIBA 1 PT_8VRZRZ7R +BS_QKT3TJVK MYT1L--IAH1 other MYT1L NA IAH1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_8VRZRZ7R +BS_QKT3TJVK OSBPL7--HNF4G frameshift OSBPL7 NA HNF4G NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_8VRZRZ7R +BS_QKT3TJVK PDCD4--SMC3 frameshift PDCD4 NA SMC3 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_8VRZRZ7R +BS_QKT3TJVK PRKCZ--HP1BP3 other PRKCZ NA HP1BP3 NA Kinase NA NA NA NA ARRIBA 1 PT_8VRZRZ7R +BS_QKT3TJVK PRKCZ--HP1BP3 frameshift PRKCZ NA HP1BP3 NA Kinase NA NA NA NA ARRIBA 1 PT_8VRZRZ7R +BS_QKT3TJVK PTPRZ1--LINC01510/MET frameshift PTPRZ1 NA LINC01510 MET NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA ARRIBA 1 PT_8VRZRZ7R +BS_QKT3TJVK ZNF10--Y_RNA other ZNF10 NA Y_RNA NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_8VRZRZ7R +BS_QNAQGAV6 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_XCX9W17B +BS_QNAQGAV6 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_XCX9W17B +BS_QNAQGAV6 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XCX9W17B +BS_QNAQGAV6 ERC2--ERC2 frameshift ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XCX9W17B +BS_QNAQGAV6 FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_XCX9W17B +BS_QNAQGAV6 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_XCX9W17B +BS_QNAQGAV6 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_XCX9W17B +BS_QNAQGAV6 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_XCX9W17B +BS_QNAQGAV6 PRDM2--PRDM2 frameshift PRDM2 NA PRDM2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_XCX9W17B +BS_QNAQGAV6 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_XCX9W17B +BS_QNNX91SM CCDC50--FGF12 in-frame CCDC50 NA FGF12 NA NA Oncogene NA NA NA ARRIBA 1 PT_CSKHQB16 +BS_QNNX91SM DLC1--TMEM64 frameshift DLC1 NA TMEM64 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_CSKHQB16 +BS_QNNX91SM FGF12--CCDC50 in-frame FGF12 NA CCDC50 NA Oncogene NA NA NA NA ARRIBA 1 PT_CSKHQB16 +BS_QP6MSKRE MAML2--YAP1 in-frame MAML2 NA YAP1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_MKDQZ17N +BS_QP6MSKRE YAP1--MAML2 in-frame YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_MKDQZ17N +BS_QPPPGYP4 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_CZRDBM1Q +BS_QPPPGYP4 BRINP1--BRINP1 frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_CZRDBM1Q +BS_QPPPGYP4 CDH10--CDH10 frameshift CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CZRDBM1Q +BS_QPPPGYP4 JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_CZRDBM1Q +BS_QPPPGYP4 SNORA68/uc_338--DACH1 other SNORA68 uc_338 DACH1 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_CZRDBM1Q +BS_QPPPGYP4 ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_CZRDBM1Q +BS_QRDT19KS AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_24DDXEB5 +BS_QRDT19KS ATF7IP--DSE other ATF7IP NA DSE NA Oncogene NA NA NA NA ARRIBA 1 PT_24DDXEB5 +BS_QRDT19KS JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_24DDXEB5 +BS_QRDT19KS PCM1--MTUS1 frameshift PCM1 NA MTUS1 NA CosmicCensus, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_24DDXEB5 +BS_QRDT19KS SPTBN2--FYN frameshift SPTBN2 NA FYN NA NA Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_24DDXEB5 +BS_QRDT19KS TNPO2--IER2 in-frame TNPO2 NA IER2 NA NA Oncogene NA NA NA ARRIBA 1 PT_24DDXEB5 +BS_QRNSKFMS KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_B5VQ16GW +BS_QRNSKFMS ZNF507--LINC01837 frameshift ZNF507 NA LINC01837 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_B5VQ16GW +BS_QSTAVWGE C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_JP1FDKN9 +BS_QSTAVWGE LMNTD1--LMNTD1 frameshift LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_JP1FDKN9 +BS_QSTAVWGE LRGUK--LRGUK in-frame LRGUK NA LRGUK NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_JP1FDKN9 +BS_QSTAVWGE RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_JP1FDKN9 +BS_QT3NZ2YZ RLIM--AL627224.1/FOXR2 other RLIM NA AL627224.1 FOXR2 NA NA NA TranscriptionFactor, Oncogene NA ARRIBA 1 PT_NESAQHB1 +BS_QTSXW7DA ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZD9AYB6F +BS_QTSXW7DA RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ZD9AYB6F +BS_QTSXW7DA ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ZD9AYB6F +BS_QV51J756 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_CWD717Q0 +BS_QV51J756 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_CWD717Q0 +BS_QV51J756 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_CWD717Q0 +BS_QV51J756 FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_CWD717Q0 +BS_QV51J756 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CWD717Q0 +BS_QV51J756 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CWD717Q0 +BS_QV51J756 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_CWD717Q0 +BS_QV51J756 MSANTD3--LINC01451 other MSANTD3 NA LINC01451 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_CWD717Q0 +BS_QV51J756 MSANTD3--LINC01451/HSPC324 other MSANTD3 NA LINC01451 HSPC324 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_CWD717Q0 +BS_QW60M0FE PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_7M2PGCBV +BS_QWNBZ9RJ AC087565.3--ZFHX3 other AC087565.3 NA ZFHX3 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA STARFUSION 1 PT_00G007DM +BS_QWNBZ9RJ AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_00G007DM +BS_QWNBZ9RJ BRINP1--BRINP1 frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_00G007DM +BS_QWNBZ9RJ CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_00G007DM +BS_QWNBZ9RJ MTSS1--MTSS1 frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_00G007DM +BS_QWNBZ9RJ MYT1L--MYT1L frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_00G007DM +BS_QWNBZ9RJ RNH1--MFSD10 other RNH1 NA MFSD10 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_00G007DM +BS_QWNBZ9RJ ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_00G007DM +BS_QWTE1CWR ABCD4--ZNF521/RN7SL97P frameshift ABCD4 NA ZNF521 RN7SL97P NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR CENPF--RD3/AC105275.1/SLC30A1 frameshift CENPF NA RD3 AC105275.1 Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR CORO1C--NSUN6 frameshift CORO1C NA NSUN6 NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR CTTN--PYGM frameshift CTTN NA PYGM NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR CUL2--HMCN1 other CUL2 NA HMCN1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR CUL2--NEK7 other CUL2 NA NEK7 NA TumorSuppressorGene Kinase, Kinase NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR DYM--AC091042.1/AC110597.1 frameshift DYM NA AC091042.1 AC110597.1 Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR DYM--ZBTB7C frameshift DYM NA ZBTB7C NA Oncogene TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR ITGB1--KIF14 other ITGB1 NA KIF14 NA TumorSuppressorGene Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_1H2REHT2 +BS_QWTE1CWR MAPKAPK2--PTCHD3/RAB18 frameshift MAPKAPK2 NA PTCHD3 RAB18 Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR MKL1--BPIFC other MKL1 NA BPIFC NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR MKL1--FBXO7 other MKL1 NA FBXO7 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_1H2REHT2 +BS_QWTE1CWR MKL1--LARGE1 other MKL1 NA LARGE1 NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR MKL1--RTCB other MKL1 NA RTCB NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR MKL1--SEMA5A other MKL1 NA SEMA5A NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR NETO1--DYM in-frame NETO1 NA DYM NA NA Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR RBM34--AL391645.1 frameshift RBM34 NA AL391645.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR RN7SL2--RMRP other RN7SL2 NA RMRP NA NA Oncogene NA NA NA STARFUSION 1 PT_1H2REHT2 +BS_QWTE1CWR ROCK1--EXOGP1/AC022809.1 frameshift ROCK1 NA EXOGP1 AC022809.1 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR SRGAP2--KIF14 frameshift SRGAP2 NA KIF14 NA NA Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR TCF20--AC025187.1/LINC02063 frameshift TCF20 NA AC025187.1 LINC02063 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR TCF20--LINC02063 frameshift TCF20 NA LINC02063 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR VPS53--MIS12 frameshift VPS53 NA MIS12 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR ZDHHC20--USP12 frameshift ZDHHC20 NA USP12 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR ZNF532--AC090771.2 other ZNF532 NA AC090771.2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR ZNF532--AC090771.2 frameshift ZNF532 NA AC090771.2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR ZNF532--PTPRN2 other ZNF532 NA PTPRN2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QWTE1CWR ZNF532--RNU6-567P/AC090771.2 other ZNF532 NA RNU6-567P AC090771.2 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_QX12J6W1 TBC1D22A--ZNRF3 frameshift TBC1D22A NA ZNRF3 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_XRQHMBHB +BS_QXKRN6CR ADAMTS9--GEMIN8/AC002524.1 frameshift ADAMTS9 NA GEMIN8 AC002524.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RM5S859Q +BS_QXKRN6CR AF127577.4--NRIP1 other AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA ARRIBA 1 PT_RM5S859Q +BS_QXKRN6CR C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_RM5S859Q +BS_QXKRN6CR C11orf95--RELA/RN7SL309P frameshift C11orf95 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_RM5S859Q +BS_QXKRN6CR EIF1AX--FGF13 other EIF1AX NA FGF13 NA CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_RM5S859Q +BS_QXKRN6CR IL1RAPL1--ADAMTS9 in-frame IL1RAPL1 NA ADAMTS9 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_RM5S859Q +BS_QXKRN6CR MARK2--RPL21P41/KBTBD8 frameshift MARK2 NA RPL21P41 KBTBD8 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_RM5S859Q +BS_QXKRN6CR PFKFB4--ADAMTS9 frameshift PFKFB4 NA ADAMTS9 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_RM5S859Q +BS_QYPHA40N MSI2--RNF213 frameshift MSI2 NA RNF213 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_3AWKWXEV +BS_QZFEB94Q GNB1--WNK1 in-frame GNB1 NA WNK1 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_25Z2NX27 +BS_QZFEB94Q PTPN11--TXNRD1 frameshift PTPN11 NA TXNRD1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_25Z2NX27 +BS_QZFEB94Q RN7SL2--COL1A1 other RN7SL2 NA COL1A1 NA NA CosmicCensus, Oncogene NA NA NA STARFUSION 1 PT_25Z2NX27 +BS_R13X6TMW CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_J0SZ1SX5 +BS_R244Z0WX COL11A1--COL11A1 in-frame COL11A1 NA COL11A1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_JPWVCTAJ +BS_R244Z0WX KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_JPWVCTAJ +BS_R439VVPK PRKDC--DEFA1/DEFT1P frameshift PRKDC NA DEFA1 DEFT1P Kinase NA NA NA NA ARRIBA 1 PT_26V72ZXB +BS_R439VVPK PVT1--AC060765.1 other PVT1 NA AC060765.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_26V72ZXB +BS_R439VVPK TACC1--AF279873.3/AC087855.2 frameshift TACC1 NA AF279873.3 AC087855.2 Oncogene NA NA NA NA ARRIBA 1 PT_26V72ZXB +BS_R439VVPK WRN--AC016074.1/RNU6-442P frameshift WRN NA AC016074.1 RNU6-442P CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_26V72ZXB +BS_R439VVPK ZFAT--WRN in-frame ZFAT NA WRN NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_26V72ZXB +BS_R439VVPK ZMIZ1--AL355863.1/BTBD7P2 other ZMIZ1 NA AL355863.1 BTBD7P2 Oncogene NA NA NA NA ARRIBA 1 PT_26V72ZXB +BS_R4Y180DM EWSR1--FLI1 in-frame EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_NBSRQAMS +BS_R4Y180DM FOS--ERRFI1 frameshift FOS NA ERRFI1 NA Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_NBSRQAMS +BS_R5SNFB5B MNT--PRKDC frameshift MNT NA PRKDC NA TumorSuppressorGene, TranscriptionFactor Kinase NA NA NA ARRIBA 1 PT_C2D4JXS1 +BS_R5SNFB5B NBEA--AC023310.4/NBEAP1 frameshift NBEA NA AC023310.4 NBEAP1 CosmicCensus NA NA Oncogene NA ARRIBA 1 PT_C2D4JXS1 +BS_R5SNFB5B TRIM37--MSI2 frameshift TRIM37 NA MSI2 NA Oncogene CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_C2D4JXS1 +BS_R7HZCZ8B AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_0CRPE7YP +BS_R7HZCZ8B AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_0CRPE7YP +BS_R7HZCZ8B CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_0CRPE7YP +BS_R7HZCZ8B DNAH9--DNAH9 frameshift DNAH9 NA DNAH9 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0CRPE7YP +BS_R7HZCZ8B ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0CRPE7YP +BS_R7HZCZ8B KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_0CRPE7YP +BS_R7HZCZ8B KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_0CRPE7YP +BS_R7HZCZ8B KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0CRPE7YP +BS_R7HZCZ8B MYT1L--MYT1L frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_0CRPE7YP +BS_R7HZCZ8B ROBO2--ROBO2 frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_0CRPE7YP +BS_R7NTZR4C DDX3X--RIOK3 frameshift DDX3X NA RIOK3 NA TumorSuppressorGene, CosmicCensus Kinase NA NA NA ARRIBA 1 PT_0MXPTTM3 +BS_R7NTZR4C FBXW7--DCLK2 in-frame FBXW7 NA DCLK2 NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, Kinase NA NA NA ARRIBA 1 PT_0MXPTTM3 +BS_R7NTZR4C FBXW7--DCLK2 frameshift FBXW7 NA DCLK2 NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, Kinase NA NA NA ARRIBA 1 PT_0MXPTTM3 +BS_R7NTZR4C IGF1R--ADAMTS17 frameshift IGF1R NA ADAMTS17 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_0MXPTTM3 +BS_R7NTZR4C IGF1R--MEF2A in-frame IGF1R NA MEF2A NA Kinase, Oncogene, Kinase TranscriptionFactor NA NA NA ARRIBA 1 PT_0MXPTTM3 +BS_R7NTZR4C IGF1R--TTC23 frameshift IGF1R NA TTC23 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_0MXPTTM3 +BS_R7NTZR4C IGF1R--TTC23 in-frame IGF1R NA TTC23 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_0MXPTTM3 +BS_R7NTZR4C MEF2A--AC087633.2 frameshift MEF2A NA AC087633.2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_0MXPTTM3 +BS_R7NTZR4C MEF2A--CERS3 other MEF2A NA CERS3 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_0MXPTTM3 +BS_R7NTZR4C MEF2A--CERS3 frameshift MEF2A NA CERS3 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_0MXPTTM3 +BS_R7NTZR4C MEF2A--IGF1R other MEF2A NA IGF1R NA TranscriptionFactor Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_0MXPTTM3 +BS_R7NTZR4C MEF2A--LRRC28 other MEF2A NA LRRC28 NA TranscriptionFactor NA NA NA TCGAFusion ARRIBA 1 PT_0MXPTTM3 +BS_R7NTZR4C ZKSCAN7--DRG2 other ZKSCAN7 NA DRG2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_0MXPTTM3 +BS_R7NTZR4C ZNF131--PARP8 frameshift ZNF131 NA PARP8 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_0MXPTTM3 +BS_R7NTZR4C ZNF660--DRG2 other ZNF660 NA DRG2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_0MXPTTM3 +BS_R9B92M75 CTNND2--DAP frameshift CTNND2 NA DAP NA CosmicCensus, Oncogene NA NA NA TCGAFusion ARRIBA 1 PT_1YQH5NSH +BS_R9B92M75 DAP--CTNND2 in-frame DAP NA CTNND2 NA NA CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_1YQH5NSH +BS_R9B92M75 MARCH1--DCLK2 in-frame MARCH1 NA DCLK2 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_1YQH5NSH +BS_R9B92M75 NEDD4L--MBP in-frame NEDD4L NA MBP NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1YQH5NSH +BS_RB2S0KDF CDK14--TMBIM7P frameshift CDK14 NA TMBIM7P NA Kinase NA NA NA NA ARRIBA 1 PT_A9YAZJNN +BS_RB2S0KDF CREB3L2--CDK14 frameshift CREB3L2 NA CDK14 NA CosmicCensus, Oncogene, TranscriptionFactor Kinase NA NA NA ARRIBA 1 PT_A9YAZJNN +BS_RB2S0KDF DGKB--Y_RNA/AC093813.1 frameshift DGKB NA Y_RNA AC093813.1 Kinase NA NA NA NA ARRIBA 1 PT_A9YAZJNN +BS_RB2S0KDF NCAPG2--CDK14 in-frame NCAPG2 NA CDK14 NA NA Kinase NA NA NA ARRIBA 1 PT_A9YAZJNN +BS_RB2S0KDF NCOR2--SCARB1 in-frame NCOR2 NA SCARB1 NA CosmicCensus, Oncogene Oncogene NA NA TCGAFusion ARRIBA 1 PT_A9YAZJNN +BS_RB2S0KDF RAB31--SMCHD1 frameshift RAB31 NA SMCHD1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_A9YAZJNN +BS_RB2S0KDF SRPK2--DPY19L2P2 frameshift SRPK2 NA DPY19L2P2 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_A9YAZJNN +BS_RB2S0KDF SRPK2--HYAL4 frameshift SRPK2 NA HYAL4 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_A9YAZJNN +BS_RB2S0KDF SRPK2--HYAL4 other SRPK2 NA HYAL4 NA Kinase, Oncogene, Kinase NA NA NA NA STARFUSION 1 PT_A9YAZJNN +BS_RB2S0KDF WDR86--AC015983.1/FEZF1 frameshift WDR86 NA AC015983.1 FEZF1 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_A9YAZJNN +BS_RCC8BXVE AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_WWZ2Q14R +BS_RCC8BXVE ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_WWZ2Q14R +BS_RCCN63K6 ARHGAP20--OR4A6P/TRIM48 frameshift ARHGAP20 NA OR4A6P TRIM48 Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 ATF7IP--LINC02484/AC093689.1 frameshift ATF7IP NA LINC02484 AC093689.1 Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 AXIN1--RBFOX1 frameshift AXIN1 NA RBFOX1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 ECE1--TNFRSF8 frameshift ECE1 NA TNFRSF8 NA NA Oncogene NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 ECE1--TNFRSF8 in-frame ECE1 NA TNFRSF8 NA NA Oncogene NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 HIPK3--AC097655.1/LINC02496 other HIPK3 NA AC097655.1 LINC02496 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 HIVEP3--HTR1D/AL109936.1 other HIVEP3 NA HTR1D AL109936.1 TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 HP1BP3--SCMH1 frameshift HP1BP3 NA SCMH1 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 LRRC59--CNTNAP2 frameshift LRRC59 NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 MID1--C1QTNF7 frameshift MID1 NA C1QTNF7 NA Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 MID1--CC2D2A in-frame MID1 NA CC2D2A NA Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 MIR101-1/AL357078.1--KDF1 other MIR101-1 AL357078.1 KDF1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 PSMB2--PATJ in-frame PSMB2 NA PATJ NA NA Oncogene NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 SFPQ--AGO1 other SFPQ NA AGO1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 STIM1--DLG1 in-frame STIM1 NA DLG1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 SULF2--ZHX3 frameshift SULF2 NA ZHX3 NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 SULF2--ZHX3 in-frame SULF2 NA ZHX3 NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 UBIAD1--LINC01135 frameshift UBIAD1 NA LINC01135 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 UBIAD1--LINC01358 frameshift UBIAD1 NA LINC01358 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RCCN63K6 ZNF362--MYSM1/AL136985.3 frameshift ZNF362 NA MYSM1 AL136985.3 TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RPC00TAJ +BS_RD4D5F9F ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_NTEKMKTX +BS_RGSMX7QD KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_4EDBZRM2 +BS_RHD7XPNP ADAMTS18--ADAMTS18 frameshift ADAMTS18 NA ADAMTS18 NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_JN3EN2HR +BS_RHD7XPNP PRKCE--LINC01121 frameshift PRKCE NA LINC01121 NA TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_JN3EN2HR +BS_RHD7XPNP THADA--THADA in-frame THADA NA THADA NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_JN3EN2HR +BS_RQSKD7PN CDK12--ABCA6 frameshift CDK12 NA ABCA6 NA CosmicCensus, Kinase NA NA NA NA ARRIBA 1 PT_2E552BAR +BS_RQSKD7PN FGF2--AP003715.1/AP002428.1 frameshift FGF2 NA AP003715.1 AP002428.1 Oncogene NA NA NA NA ARRIBA 1 PT_2E552BAR +BS_RRAEQZ97 AGFG1--ASXL2 frameshift AGFG1 NA ASXL2 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 ASXL2--SPHKAP/AC074019.1 frameshift ASXL2 NA SPHKAP AC074019.1 CosmicCensus NA NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 BCL2L11--AC107079.1/AC112715.1 frameshift BCL2L11 NA AC107079.1 AC112715.1 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 BIN1--NBAS frameshift BIN1 NA NBAS NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 CNNM4--MIR3681HG frameshift CNNM4 NA MIR3681HG NA Oncogene NA NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 DCTN1--ALK in-frame DCTN1 NA ALK NA CosmicCensus Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 FBXO11--Y_RNA/FMNL2 frameshift FBXO11 NA Y_RNA FMNL2 CosmicCensus NA NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 GLI2--RN7SKP93/MGAT5 other GLI2 NA RN7SKP93 MGAT5 Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 GTF3C2--MAP2/UNC80 other GTF3C2 NA MAP2 UNC80 NA Oncogene NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 HPCAL1--DIRC3 other HPCAL1 NA DIRC3 NA NA Oncogene NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 MAP2--LINC01953/AC079610.3 other MAP2 NA LINC01953 AC079610.3 Oncogene NA NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 MAP4K4--PTCD3 frameshift MAP4K4 NA PTCD3 NA Kinase NA NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 MAP4K4--PTCD3 in-frame MAP4K4 NA PTCD3 NA Kinase NA NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 MTA3--KIDINS220 frameshift MTA3 NA KIDINS220 NA Oncogene NA NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 PGAP1--DPP4 other PGAP1 NA DPP4 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 RFTN2--TCF7L1 frameshift RFTN2 NA TCF7L1 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 RTN4--FBXO36 frameshift RTN4 NA FBXO36 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RRAEQZ97 ZEB2--PPM1G frameshift ZEB2 NA PPM1G NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_FXPJM0MW +BS_RSRPX3S8 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_GR8P8NY5 +BS_RSRPX3S8 DDX1--AC008164.1/AC008069.1 frameshift DDX1 NA AC008164.1 AC008069.1 Oncogene NA NA NA NA ARRIBA 1 PT_GR8P8NY5 +BS_RSRPX3S8 NTRK3--NTRK3 frameshift NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_GR8P8NY5 +BS_RSRPX3S8 RANBP2--LRRC49 frameshift RANBP2 NA LRRC49 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_GR8P8NY5 +BS_RVSEDNJ4 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_HGHV85PZ +BS_RWJZFTP9 GNPTAB--SPTAN1 frameshift GNPTAB NA SPTAN1 NA NA Oncogene NA NA NA ARRIBA 1 PT_S0PBN4M7 +BS_RWJZFTP9 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_S0PBN4M7 +BS_RWJZFTP9 PRKAR1A--PRKCA in-frame PRKAR1A NA PRKCA NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase NA NA NA ARRIBA 1 PT_S0PBN4M7 +BS_RX1YTZ7F HELZ2--CDH4 in-frame HELZ2 NA CDH4 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_4XB3YTJM +BS_RX1YTZ7F LINC00665--ZNF461 other LINC00665 NA ZNF461 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_4XB3YTJM +BS_RX1YTZ7F REV3L--FYN frameshift REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_4XB3YTJM +BS_RX1YTZ7F REV3L--FYN in-frame REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_4XB3YTJM +BS_RX1YTZ7F ZNF461--SEZ6L other ZNF461 NA SEZ6L NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_4XB3YTJM +BS_RX1YTZ7F ZNF721--LINC01182 other ZNF721 NA LINC01182 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_4XB3YTJM +BS_RXN5T5YT AF127577.4--NRIP1 other AF127577.4 NA NRIP1 NA NA Oncogene NA NA NA ARRIBA 1 PT_PR4YBBH3 +BS_RXN5T5YT AL139099.5--RMRP other AL139099.5 NA RMRP NA NA Oncogene NA NA NA STARFUSION 1 PT_PR4YBBH3 +BS_RXN5T5YT ALDOA--APC2 frameshift ALDOA NA APC2 NA NA Oncogene NA NA NA ARRIBA 1 PT_PR4YBBH3 +BS_RXN5T5YT LEF1--NMU/RNU6-276P other LEF1 NA NMU RNU6-276P CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_PR4YBBH3 +BS_RXN5T5YT NKX6-1--AC098587.1/AC098868.1 other NKX6-1 NA AC098587.1 AC098868.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_PR4YBBH3 +BS_RXN5T5YT PDGFRA--LNX1 frameshift PDGFRA NA LNX1 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_PR4YBBH3 +BS_RXN5T5YT RMRP--AL139099.5 other RMRP NA AL139099.5 NA Oncogene NA NA NA NA STARFUSION 1 PT_PR4YBBH3 +BS_RXN5T5YT RMRP--RN7SL1 other RMRP NA RN7SL1 NA Oncogene NA NA NA NA STARFUSION 1 PT_PR4YBBH3 +BS_RXN5T5YT RN7SL1--RMRP other RN7SL1 NA RMRP NA NA Oncogene NA NA NA STARFUSION 1 PT_PR4YBBH3 +BS_S0175QKX CUBN--CUBN frameshift CUBN NA CUBN NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_0NY38X3W +BS_S1KK7XRH AL445673.1--PRRX1/MROH9 other AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_YJBPEF4V +BS_S1KK7XRH KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_YJBPEF4V +BS_S1KK7XRH MCM9--MCM9 in-frame MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_YJBPEF4V +BS_S1M423AB AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_BRTVGGRK +BS_S1M423AB PAPPA2--PAPPA2 frameshift PAPPA2 NA PAPPA2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_BRTVGGRK +BS_S1M423AB SPRYD7/DLEU2--DLEU2 other SPRYD7 DLEU2 DLEU2 NA NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA ARRIBA 1 PT_BRTVGGRK +BS_S1M423AB ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_BRTVGGRK +BS_S458NMKH NTRK2--AFAP1 frameshift NTRK2 NA AFAP1 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_S2SQJVGK +BS_S458NMKH NTRK2--AFAP1 in-frame NTRK2 NA AFAP1 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_S2SQJVGK +BS_S4V9E1XJ KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_Y572BRC1 +BS_S4V9E1XJ KIAA1549--BRAF frameshift KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_Y572BRC1 +BS_S50KQEXV KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_MPRBGGEJ +BS_S5P8VTN5 CTDP1--SALL3/ATP9B frameshift CTDP1 NA SALL3 ATP9B NA TranscriptionFactor NA NA NA ARRIBA 1 PT_858H7ABM +BS_S5P8VTN5 FNDC3A--PACRG other FNDC3A NA PACRG NA NA TumorSuppressorGene NA NA NA ARRIBA, STARFUSION 2 PT_858H7ABM +BS_S5P8VTN5 MACF1--TTYH1 frameshift MACF1 NA TTYH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_858H7ABM +BS_S5P8VTN5 RAF1--NUP210 other RAF1 NA NUP210 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_858H7ABM +BS_S69QZAJR AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_5JA1N2H4 +BS_S69QZAJR CDH10--CDH10 frameshift CDH10 NA CDH10 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_5JA1N2H4 +BS_S69QZAJR ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_5JA1N2H4 +BS_S69QZAJR FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_5JA1N2H4 +BS_S69QZAJR FAT2--AGAP3 frameshift FAT2 NA AGAP3 NA Oncogene NA NA NA NA ARRIBA 1 PT_5JA1N2H4 +BS_S6NJRR5W RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VTF65Y63 +BS_S6Q7NKA3 AKAP13--THADA frameshift AKAP13 NA THADA NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_S6Q7NKA3 ASPH--SIAH1 in-frame ASPH NA SIAH1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_S6Q7NKA3 CLSTN2--PCDH9 in-frame CLSTN2 NA PCDH9 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_S6Q7NKA3 EIF2AK4--GLCE frameshift EIF2AK4 NA GLCE NA Kinase NA NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_S6Q7NKA3 MAP2K4--COX10-AS1 other MAP2K4 NA COX10-AS1 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_S6Q7NKA3 MED15--MYO18B frameshift MED15 NA MYO18B NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_S6Q7NKA3 NPAS3--TTLL11 in-frame NPAS3 NA TTLL11 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_S6Q7NKA3 THADA--AL445687.2/RNU6-716P frameshift THADA NA AL445687.2 RNU6-716P Oncogene NA NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_S6Q7NKA3 ZMYND8--AC009720.1 frameshift ZMYND8 NA AC009720.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_S6Q7NKA3 ZNF136--AC011493.1 frameshift ZNF136 NA AC011493.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_S6Q7NKA3 ZNF136--ZNF675 frameshift ZNF136 NA ZNF675 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_S6S7SK3P BMPR2--FEV in-frame BMPR2 NA FEV NA Kinase, TumorSuppressorGene, Kinase CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_S6S7SK3P HOOK3--HOOK3 frameshift HOOK3 NA HOOK3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_S6S7SK3P PKN2--BLNK frameshift PKN2 NA BLNK NA Kinase, Kinase TumorSuppressorGene NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_S6S7SK3P PKN2--BLNK in-frame PKN2 NA BLNK NA Kinase, Kinase TumorSuppressorGene NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_S6S7SK3P POLQ--IFT57 frameshift POLQ NA IFT57 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_S6S7SK3P SNAPC3--ELF5 frameshift SNAPC3 NA ELF5 NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_S6S7SK3P STAG1--SERF1AP1/STMN1P2 frameshift STAG1 NA SERF1AP1 STMN1P2 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_S6S7SK3P TAMM41--ERC2 other TAMM41 NA ERC2 NA NA Oncogene NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_S6S7SK3P TCF4--RPL17P45/KC6 frameshift TCF4 NA RPL17P45 KC6 TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_37B5JRP1 +BS_S7CZY2CH PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_BXXZE0CQ +BS_SAA624A4 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_EG7PH32E +BS_SAA624A4 ERBB4--ERBB4 frameshift ERBB4 NA ERBB4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_EG7PH32E +BS_SAA624A4 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_EG7PH32E +BS_SAA624A4 SPARCL1--GREB1L other SPARCL1 NA GREB1L NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_EG7PH32E +BS_SBFNFZ8B AL050305.1/AL591501.1--DMD other AL050305.1 AL591501.1 DMD NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_1EB5KHZX +BS_SBFNFZ8B CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_1EB5KHZX +BS_SBFNFZ8B ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_1EB5KHZX +BS_SD8YBRBR DLGAP1--RAD23BP2/SEMA3A other DLGAP1 NA RAD23BP2 SEMA3A Oncogene NA NA NA NA ARRIBA 1 PT_TPDB1WC8 +BS_SD8YBRBR FKBP4--ERC1 other FKBP4 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_TPDB1WC8 +BS_SD8YBRBR GTF3C5--VAV2/LINC00094 frameshift GTF3C5 NA VAV2 LINC00094 NA Oncogene NA NA NA ARRIBA 1 PT_TPDB1WC8 +BS_SD8YBRBR LRIG3--SOX5 in-frame LRIG3 NA SOX5 NA TumorSuppressorGene, CosmicCensus Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_TPDB1WC8 +BS_SD8YBRBR NLK--MREGP1/AC024940.5 frameshift NLK NA MREGP1 AC024940.5 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_TPDB1WC8 +BS_SDA4RMMG CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_EW604JB3 +BS_SDA4RMMG KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_EW604JB3 +BS_SDA4RMMG PAPPA2--PAPPA2 frameshift PAPPA2 NA PAPPA2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_EW604JB3 +BS_SDA4RMMG RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_EW604JB3 +BS_SDCNP7MW LINC02319--AL118557.1/PTGDR other LINC02319 NA AL118557.1 PTGDR NA NA NA TumorSuppressorGene NA ARRIBA 1 PT_3KWSRWZN +BS_SDZY6RZ3 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_5GQ76YZJ +BS_SFKZSJN1 CDH20--CDH20 frameshift CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_409Y4N1N +BS_SFKZSJN1 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_409Y4N1N +BS_SFKZSJN1 CYB5R4--CYB5R4 frameshift CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_409Y4N1N +BS_SFKZSJN1 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_409Y4N1N +BS_SFKZSJN1 LMNTD1--LMNTD1 frameshift LMNTD1 NA LMNTD1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_409Y4N1N +BS_SFKZSJN1 MTSS1--MTSS1 frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_409Y4N1N +BS_SFKZSJN1 MYT1L--MYT1L frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_409Y4N1N +BS_SFKZSJN1 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_409Y4N1N +BS_SFKZSJN1 ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_409Y4N1N +BS_SFRQXM76 HIPK3/AL137161.1--NELL1 other HIPK3 AL137161.1 NELL1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_DPVW4M1W +BS_SFRQXM76 SACM1L--ROBO1 frameshift SACM1L NA ROBO1 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_DPVW4M1W +BS_SFRQXM76 SERINC3--OVOL2 frameshift SERINC3 NA OVOL2 NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_DPVW4M1W +BS_SHMC4902 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_TPSMT960 +BS_SKGJ5SY9 AC100757.2--NBEA other AC100757.2 NA NBEA NA NA CosmicCensus NA NA NA ARRIBA 1 PT_D1WJ3BJX +BS_SKGJ5SY9 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_D1WJ3BJX +BS_SKGJ5SY9 HACE1--BVES frameshift HACE1 NA BVES NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_D1WJ3BJX +BS_SKGJ5SY9 HACE1--BVES in-frame HACE1 NA BVES NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_D1WJ3BJX +BS_SKGJ5SY9 PRR5--CFAP73 other PRR5 NA CFAP73 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_D1WJ3BJX +BS_SM8VQFPD ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_5KP2E0DS +BS_SNVM7CZT DCLK2--CDH11 frameshift DCLK2 NA CDH11 NA Kinase, Kinase TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_H2HT2WQX +BS_SQX5E15Z PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_1N6ATKJS +BS_SXCZ3CXN BCL9L--SLC35F2 other BCL9L NA SLC35F2 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_CMB6TASJ +BS_SXCZ3CXN C11orf95--LRP5 frameshift C11orf95 NA LRP5 NA NA Oncogene NA NA NA ARRIBA 1 PT_CMB6TASJ +BS_SXCZ3CXN C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_CMB6TASJ +BS_SXCZ3CXN CD151--CYB561A3 other CD151 NA CYB561A3 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_CMB6TASJ +BS_SXCZ3CXN CD151--TMEM138/TMEM216 other CD151 NA TMEM138 TMEM216 Oncogene NA NA NA NA ARRIBA 1 PT_CMB6TASJ +BS_SXCZ3CXN CELF1--ZNF202/OR6X1 other CELF1 NA ZNF202 OR6X1 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_CMB6TASJ +BS_SXCZ3CXN NRXN2--AP000770.1/BUD13 frameshift NRXN2 NA AP000770.1 BUD13 Oncogene NA NA NA NA ARRIBA 1 PT_CMB6TASJ +BS_SXCZ3CXN NRXN2--BUD13 frameshift NRXN2 NA BUD13 NA Oncogene NA NA NA NA ARRIBA 1 PT_CMB6TASJ +BS_SXCZ3CXN PHF21A--DISC1FP1 frameshift PHF21A NA DISC1FP1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_CMB6TASJ +BS_SXCZ3CXN PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_CMB6TASJ +BS_SXCZ3CXN RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_CMB6TASJ +BS_SXRS2P6T AC104836.1--TGFBR3 frameshift AC104836.1 NA TGFBR3 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_7YGZ526E +BS_SXRS2P6T BTBD8--TGFBR3 frameshift BTBD8 NA TGFBR3 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_7YGZ526E +BS_SXRS2P6T KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_7YGZ526E +BS_SXRS2P6T TGFBR3--LPCAT2BP frameshift TGFBR3 NA LPCAT2BP NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_7YGZ526E +BS_SXRS2P6T TGFBR3--SETSIP frameshift TGFBR3 NA SETSIP NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_7YGZ526E +BS_T0RKFEKR KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_AYVKQZRB +BS_T0RKFEKR KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_AYVKQZRB +BS_T1DVKKJB AGPAT3--CD44 frameshift AGPAT3 NA CD44 NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_JP1FDKN9 +BS_T1DVKKJB C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_JP1FDKN9 +BS_T1DVKKJB PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_JP1FDKN9 +BS_T1QMEH1N SPG7--BBX frameshift SPG7 NA BBX NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_EXJAEW1M +BS_T1W4JA94 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_QT9T89S5 +BS_T1YHK6B7 CDK13--ST7-AS2 frameshift CDK13 NA ST7-AS2 NA Kinase NA NA NA NA ARRIBA 1 PT_DNH1VP67 +BS_T1YHK6B7 COPB1--TEAD1/LINC00958 frameshift COPB1 NA TEAD1 LINC00958 NA TranscriptionFactor NA NA NA ARRIBA 1 PT_DNH1VP67 +BS_T1YHK6B7 GAB2--RPS4XP13/SERPING1 frameshift GAB2 NA RPS4XP13 SERPING1 Oncogene NA NA NA NA ARRIBA 1 PT_DNH1VP67 +BS_T1YHK6B7 GAB2--SERPING1 other GAB2 NA SERPING1 NA Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_DNH1VP67 +BS_T1YHK6B7 RRAS2--INSC in-frame RRAS2 NA INSC NA Oncogene NA NA NA NA ARRIBA 1 PT_DNH1VP67 +BS_T1YHK6B7 RRAS2--INSC frameshift RRAS2 NA INSC NA Oncogene NA NA NA NA ARRIBA 1 PT_DNH1VP67 +BS_T1YHK6B7 ST7--PDE1C frameshift ST7 NA PDE1C NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_DNH1VP67 +BS_T1YHK6B7 ST7-AS2--CADPS2 other ST7-AS2 NA CADPS2 NA NA Oncogene NA NA NA ARRIBA 1 PT_DNH1VP67 +BS_T1YHK6B7 ZC3HAV1--CNTNAP2 in-frame ZC3HAV1 NA CNTNAP2 NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_DNH1VP67 +BS_T2QPMZCM ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_6VJ5PNKS +BS_T3DGY9J9 ACACB--NF1 other ACACB NA NF1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JSFBMK5V +BS_T3DGY9J9 CSNK1D--CPSF6 frameshift CSNK1D NA CPSF6 NA Kinase NA NA NA NA ARRIBA 1 PT_JSFBMK5V +BS_T3H5AY8A RMRP--AL355075.4 other RMRP NA AL355075.4 NA Oncogene NA NA NA NA STARFUSION 1 PT_KMHGNCNR +BS_T4P3J13C CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_N9KYV4WB +BS_T55Y4Z0Y RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_VBNP6JFB +BS_TA9WP4TH CDK8--SNORA68/uc_338 frameshift CDK8 NA SNORA68 uc_338 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_B7QRTN72 +BS_TA9WP4TH CDK8--SNORA9/RPL21P110 frameshift CDK8 NA SNORA9 RPL21P110 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_B7QRTN72 +BS_TBWYAFSM IGFBP5--AL139099.5 other IGFBP5 NA AL139099.5 NA TumorSuppressorGene, Oncogene NA NA NA NA STARFUSION 1 PT_625X34JX +BS_TBWYAFSM IGFBP5--RN7SL1 other IGFBP5 NA RN7SL1 NA TumorSuppressorGene, Oncogene NA NA NA NA STARFUSION 1 PT_625X34JX +BS_TBWYAFSM ROBO2--ROBO2 frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_625X34JX +BS_TDEFAPNH CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_GYJ97915 +BS_TDEFAPNH CYB5R4--CYB5R4 frameshift CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GYJ97915 +BS_TDEFAPNH FGFR1--TACC1 in-frame FGFR1 NA TACC1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_GYJ97915 +BS_TDEFAPNH FPGT-TNNI3K--FPGT-TNNI3K frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_GYJ97915 +BS_TDEFAPNH JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_GYJ97915 +BS_TDEFAPNH MYT1L--MYT1L frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_GYJ97915 +BS_TDEFAPNH ROBO2--ROBO2 frameshift ROBO2 NA ROBO2 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_GYJ97915 +BS_TDEFAPNH TACC1--FGFR1 frameshift TACC1 NA FGFR1 NA Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_GYJ97915 +BS_TDEFAPNH TNNI3K--TNNI3K frameshift TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_GYJ97915 +BS_TE0GVDNG AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_2FK75B27 +BS_TE0GVDNG ATF6--ATF6 frameshift ATF6 NA ATF6 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_2FK75B27 +BS_TG93XC55 AL050305.1/AL591501.1--DMD other AL050305.1 AL591501.1 DMD NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_DDFAZ345 +BS_TG93XC55 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DDFAZ345 +BS_TG93XC55 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DDFAZ345 +BS_TG93XC55 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_DDFAZ345 +BS_TG93XC55 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DDFAZ345 +BS_TG93XC55 FPGT-TNNI3K--FPGT-TNNI3K frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_DDFAZ345 +BS_TG93XC55 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DDFAZ345 +BS_TG93XC55 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DDFAZ345 +BS_TG93XC55 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DDFAZ345 +BS_TG93XC55 TNNI3K--TNNI3K frameshift TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_DDFAZ345 +BS_TG93XC55 TTC39B--TTC39B frameshift TTC39B NA TTC39B NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DDFAZ345 +BS_TGS109T3 CLOCK--ATP10D other CLOCK NA ATP10D NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_18QG3Z4H +BS_TGS109T3 SARS2--PBX4 in-frame SARS2 NA PBX4 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_18QG3Z4H +BS_TGS109T3 SGMS1--AC068898.1 other SGMS1 NA AC068898.1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_18QG3Z4H +BS_TGS109T3 ZNF26--FAM135B frameshift ZNF26 NA FAM135B NA TranscriptionFactor CosmicCensus NA NA NA ARRIBA 1 PT_18QG3Z4H +BS_TGS109T3 ZNF84--AC100807.1/AC087354.1 frameshift ZNF84 NA AC100807.1 AC087354.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_18QG3Z4H +BS_TGW6HC4X STAT4--AC079777.1/HMGB1P27 frameshift STAT4 NA AC079777.1 HMGB1P27 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X0FPPTMT +BS_THSPSG2Z NF2--LINC01638/AL020994.3 frameshift NF2 NA LINC01638 AL020994.3 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_M0FVZ88D +BS_THSPSG2Z POU6F2--POU6F2 frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_M0FVZ88D +BS_THSPSG2Z TFDP2--PDS5A other TFDP2 NA PDS5A NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_M0FVZ88D +BS_TJTEF70D AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_TJTEF70D DAW1--ZNF609 frameshift DAW1 NA ZNF609 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_TJTEF70D RHBDD1--LYN frameshift RHBDD1 NA LYN NA NA Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_TJTEF70D TOP2A--SMG1 frameshift TOP2A NA SMG1 NA Oncogene Kinase, Kinase NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_TJTEF70D WFS1--PLAG1 other WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_MDWPRDBT +BS_TK84K675 COL5A1--TSC22D1 frameshift COL5A1 NA TSC22D1 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_TK84K675 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_TK84K675 SFPQ--SSX2IP other SFPQ NA SSX2IP NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_TK84K675 TARSL2--ZNF609 other TARSL2 NA ZNF609 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_MDWPRDBT +BS_TK84K675 WFS1--PLAG1 other WFS1 NA PLAG1 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_MDWPRDBT +BS_TM9MH0RP EPS8--EPS8 frameshift EPS8 NA EPS8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_59D00MBQ +BS_TM9MH0RP NTRK2--CTNND2 in-frame NTRK2 NA CTNND2 NA Oncogene, Kinase CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_59D00MBQ +BS_TM9MH0RP SETD1B--GYS1 in-frame SETD1B NA GYS1 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_59D00MBQ +BS_TMTV769C PPIE--INPP4B other PPIE NA INPP4B NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_8FWP7BR3 +BS_TMTV769C ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_8FWP7BR3 +BS_TNRHHYNC EPB41L3--EPB41L3 frameshift EPB41L3 NA EPB41L3 NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_S8E3281G +BS_TNRHHYNC RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_S8E3281G +BS_TNRHHYNC WNK3--WNK3 in-frame WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_S8E3281G +BS_TQ5QHR17 ZNF556--TMPRSS9 frameshift ZNF556 NA TMPRSS9 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_M7NFAC5G +BS_TRKH2SPE CAMTA1--SMAP2 frameshift CAMTA1 NA SMAP2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RA6AGBA7 +BS_TRKH2SPE DDX6--XRRA1 in-frame DDX6 NA XRRA1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RA6AGBA7 +BS_TRKH2SPE DDX6--XRRA1 frameshift DDX6 NA XRRA1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RA6AGBA7 +BS_TRKH2SPE DIP2B--TEAD4 in-frame DIP2B NA TEAD4 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_RA6AGBA7 +BS_TRKH2SPE DNAJC6--SGIP1 other DNAJC6 NA SGIP1 NA Oncogene NA NA NA NA ARRIBA 1 PT_RA6AGBA7 +BS_TRKH2SPE FOXJ3--NFYC frameshift FOXJ3 NA NFYC NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_RA6AGBA7 +BS_TRKH2SPE NEK7--AL122019.1 other NEK7 NA AL122019.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_RA6AGBA7 +BS_TRKH2SPE NTRK3--NTRK3 frameshift NTRK3 NA NTRK3 NA TumorSuppressorGene, CosmicCensus, Oncogene, Kinase TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RA6AGBA7 +BS_TRKH2SPE PHACTR4--USH2A other PHACTR4 NA USH2A NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_RA6AGBA7 +BS_TRKH2SPE POU6F2--POU6F2 frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_RA6AGBA7 +BS_TRKH2SPE SFMBT2--BDH1 frameshift SFMBT2 NA BDH1 NA Oncogene NA NA NA NA ARRIBA 1 PT_RA6AGBA7 +BS_TRKH2SPE ZEB2--LINC01798 frameshift ZEB2 NA LINC01798 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RA6AGBA7 +BS_TRKH2SPE ZNF589--GABRA3 frameshift ZNF589 NA GABRA3 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_RA6AGBA7 +BS_TV5B86ZD AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9BZETM0M +BS_TV5B86ZD ZC3H7B--MTMR3 other ZC3H7B NA MTMR3 NA NA Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_9BZETM0M +BS_TW8DQH8J AC027097.1--ERN1/SNHG25 other AC027097.1 NA ERN1 SNHG25 NA Kinase NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_TW8DQH8J AC027097.2--ERN1/SNHG25 other AC027097.2 NA ERN1 SNHG25 NA Kinase NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_TW8DQH8J AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_TW8DQH8J ERN1--ATP8B1 frameshift ERN1 NA ATP8B1 NA Kinase Oncogene NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_TW8DQH8J WNK3--WNK3 frameshift WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_9S6WMQ92 +BS_TXZ7KHTQ ADNP2--EXOC6 in-frame ADNP2 NA EXOC6 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_VWZZTK38 +BS_TXZ7KHTQ KIT--AC098868.1/LINC02260 frameshift KIT NA AC098868.1 LINC02260 Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_VWZZTK38 +BS_TXZ7KHTQ PCDH9--TPT1-AS1 frameshift PCDH9 NA TPT1-AS1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_VWZZTK38 +BS_TXZ7KHTQ RNU6-3P--EIF4A2 other RNU6-3P NA EIF4A2 NA NA CosmicCensus, Oncogene NA NA NA STARFUSION 1 PT_VWZZTK38 +BS_TXZ7KHTQ ZNF37BP--C10orf142/CXCL12 other ZNF37BP NA C10orf142 CXCL12 NA NA NA TumorSuppressorGene NA ARRIBA 1 PT_VWZZTK38 +BS_TYAYZ9ZW AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_NV584F7Q +BS_TYAYZ9ZW FGFR1--HERC6 frameshift FGFR1 NA HERC6 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_NV584F7Q +BS_TYAYZ9ZW ZNF521--MYO18B frameshift ZNF521 NA MYO18B NA CosmicCensus, Oncogene, TranscriptionFactor TumorSuppressorGene NA NA NA ARRIBA 1 PT_NV584F7Q +BS_TZ5D0A7R ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_8SDJXNFR +BS_TZ5D0A7R C11orf95--NCOA2 frameshift C11orf95 NA NCOA2 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_8SDJXNFR +BS_TZ5D0A7R C11orf95--NCOA2 in-frame C11orf95 NA NCOA2 NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA STARFUSION 1 PT_8SDJXNFR +BS_TZ5D0A7R JAG2--TMOD2 frameshift JAG2 NA TMOD2 NA Oncogene NA NA NA NA ARRIBA 1 PT_8SDJXNFR +BS_TZ5D0A7R NCOA2--JAG2 frameshift NCOA2 NA JAG2 NA CosmicCensus, Oncogene, TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_8SDJXNFR +BS_TZ5D0A7R PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_8SDJXNFR +BS_TZVFR600 CTNNB1--LINC01572 frameshift CTNNB1 NA LINC01572 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_RFB07MZS +BS_TZVFR600 EIF3H--PVT1 frameshift EIF3H NA PVT1 NA NA Oncogene NA NA NA ARRIBA 1 PT_RFB07MZS +BS_TZVFR600 PVT1--EIF3H other PVT1 NA EIF3H NA Oncogene NA NA NA NA ARRIBA 1 PT_RFB07MZS +BS_TZVFR600 PVT1--MACROD2 other PVT1 NA MACROD2 NA Oncogene NA NA NA NA ARRIBA 1 PT_RFB07MZS +BS_TZVFR600 PVT1--MACROD2-IT1 other PVT1 NA MACROD2-IT1 NA Oncogene NA NA NA NA ARRIBA 1 PT_RFB07MZS +BS_TZVFR600 PVT1--UTP23 other PVT1 NA UTP23 NA Oncogene NA NA NA NA ARRIBA 1 PT_RFB07MZS +BS_V0Q1G94N KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_Y572BRC1 +BS_V3REENH9 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_P9RT6693 +BS_V3Z3DB4N CDK14--KLF14/AC016831.6 frameshift CDK14 NA KLF14 AC016831.6 Kinase TranscriptionFactor NA NA NA ARRIBA 1 PT_PF9EC93Q +BS_V3Z3DB4N CDK14--MKLN1 in-frame CDK14 NA MKLN1 NA Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_PF9EC93Q +BS_V3Z3DB4N CDK14--MKLN1 frameshift CDK14 NA MKLN1 NA Kinase NA NA NA NA ARRIBA, STARFUSION 2 PT_PF9EC93Q +BS_V3Z3DB4N CDK14--MKLN1 other CDK14 NA MKLN1 NA Kinase NA NA NA NA ARRIBA 1 PT_PF9EC93Q +BS_V3Z3DB4N CDK14--RNU6-1125P/RPL31P35 frameshift CDK14 NA RNU6-1125P RPL31P35 Kinase NA NA NA NA ARRIBA 1 PT_PF9EC93Q +BS_V3Z3DB4N CDK14--STEAP2-AS1 other CDK14 NA STEAP2-AS1 NA Kinase NA NA NA NA ARRIBA 1 PT_PF9EC93Q +BS_V3Z3DB4N CDK14--STEAP4/EIF4A1P13 frameshift CDK14 NA STEAP4 EIF4A1P13 Kinase NA NA NA NA ARRIBA 1 PT_PF9EC93Q +BS_V3Z3DB4N ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_PF9EC93Q +BS_V3Z3DB4N IRF2--LINC01093 other IRF2 NA LINC01093 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_PF9EC93Q +BS_V3Z3DB4N MKLN1--CDK14 frameshift MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_PF9EC93Q +BS_V3Z3DB4N MKLN1--CDK14 in-frame MKLN1 NA CDK14 NA NA Kinase NA NA TCGAFusion ARRIBA 1 PT_PF9EC93Q +BS_V3Z3DB4N RLIM--AL627224.1/FOXR2 other RLIM NA AL627224.1 FOXR2 NA NA NA TranscriptionFactor, Oncogene NA ARRIBA 1 PT_PF9EC93Q +BS_V3Z3DB4N RSF1--TENM4 frameshift RSF1 NA TENM4 NA Oncogene NA NA NA NA ARRIBA 1 PT_PF9EC93Q +BS_V3Z3DB4N SRPK2--LHFPL3 frameshift SRPK2 NA LHFPL3 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_PF9EC93Q +BS_V3Z3DB4N UBE2H--CHCHD3 other UBE2H NA CHCHD3 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_PF9EC93Q +BS_V3Z3DB4N ZNF528--HAS1 frameshift ZNF528 NA HAS1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_PF9EC93Q +BS_V4W81SFC EIF2AK4--CCDC47 in-frame EIF2AK4 NA CCDC47 NA Kinase NA NA NA NA ARRIBA 1 PT_W17NV5YG +BS_V4W81SFC RMRP--AL139099.5 other RMRP NA AL139099.5 NA Oncogene NA NA NA NA STARFUSION 1 PT_W17NV5YG +BS_V4W81SFC RMRP--RN7SL1 other RMRP NA RN7SL1 NA Oncogene NA NA NA NA STARFUSION 1 PT_W17NV5YG +BS_V72GX2AZ KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_V07ZH5JS +BS_V72H4RQS NCAM1--CADM1 in-frame NCAM1 NA CADM1 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_KN25EYMG +BS_V7BJM89K FUCA2--FGFR1OP frameshift FUCA2 NA FGFR1OP NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_94EHCMXA +BS_V7BJM89K TNR--RFWD2 other TNR NA RFWD2 NA Oncogene TumorSuppressorGene NA NA TCGAFusion ARRIBA 1 PT_94EHCMXA +BS_V89HGTET KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_N9CGVG02 +BS_V89HGTET PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_N9CGVG02 +BS_V96WVE3Z AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_H3WWDMW9 +BS_V96WVE3Z MAPK8--MIR3663HG/RPL12P26 other MAPK8 NA MIR3663HG RPL12P26 Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_H3WWDMW9 +BS_V96WVE3Z POU6F2--POU6F2 frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_H3WWDMW9 +BS_V96WVE3Z PTPRD--AL135923.2/PTPRD other PTPRD NA AL135923.2 PTPRD TumorSuppressorGene, CosmicCensus, Oncogene NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA ARRIBA 1 PT_H3WWDMW9 +BS_VA5T4KAA DLD--NRCAM frameshift DLD NA NRCAM NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_2ZTXV44P +BS_VA5T4KAA DLD--NRCAM in-frame DLD NA NRCAM NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_2ZTXV44P +BS_VAAHBH60 C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_GH27VJBD +BS_VAAHBH60 C11orf95--RELA/RN7SL309P frameshift C11orf95 NA RELA RN7SL309P NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GH27VJBD +BS_VAAHBH60 C2CD3--MACROD1 in-frame C2CD3 NA MACROD1 NA NA Oncogene NA NA NA ARRIBA 1 PT_GH27VJBD +BS_VAAHBH60 C2CD3--MACROD1/STIP1 frameshift C2CD3 NA MACROD1 STIP1 NA Oncogene NA NA NA ARRIBA 1 PT_GH27VJBD +BS_VARR255N KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_W3FSA7NH +BS_VARR255N RMRP--AL139099.5 other RMRP NA AL139099.5 NA Oncogene NA NA NA NA STARFUSION 1 PT_W3FSA7NH +BS_VARR255N RMRP--RN7SL1 other RMRP NA RN7SL1 NA Oncogene NA NA NA NA STARFUSION 1 PT_W3FSA7NH +BS_VF5XWFXD PARP11--XPC other PARP11 NA XPC NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_JNEV57VK +BS_VJ2S5DVS AC022387.1--DDR2 other AC022387.1 NA DDR2 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS AC092295.2--MDS2 other AC092295.2 NA MDS2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS BNC2--SGMS1 frameshift BNC2 NA SGMS1 NA TranscriptionFactor TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS ERCC6--FTH1P12/RNU6-246P frameshift ERCC6 NA FTH1P12 RNU6-246P Oncogene NA NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS FGF14--UBAC2 in-frame FGF14 NA UBAC2 NA Oncogene NA NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS GLI3--RALA frameshift GLI3 NA RALA NA Oncogene, TranscriptionFactor Oncogene NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS KIF21A--SNAPC3 frameshift KIF21A NA SNAPC3 NA NA Oncogene NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS NOTCH1--AGPAT2/FAM69B frameshift NOTCH1 NA AGPAT2 FAM69B TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS PCCA--FGF14 frameshift PCCA NA FGF14 NA NA Oncogene NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS PHKB--CHD9 frameshift PHKB NA CHD9 NA NA Oncogene NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS PIK3CB--CLSTN2 frameshift PIK3CB NA CLSTN2 NA CosmicCensus, Kinase NA NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS PSIP1--KIF21A other PSIP1 NA KIF21A NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS RBL2--AC002524.1/GLRA2 frameshift RBL2 NA AC002524.1 GLRA2 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS RSPRY1--SNAPC3 other RSPRY1 NA SNAPC3 NA NA Oncogene NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS SARNP--AL590824.1/FAM46A frameshift SARNP NA AL590824.1 FAM46A Oncogene NA NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS SGMS1--BNC2 other SGMS1 NA BNC2 NA TumorSuppressorGene, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS SNAPC3--KIF21A other SNAPC3 NA KIF21A NA Oncogene NA NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJ2S5DVS TNFAIP1--AC007491.1/CRNDE frameshift TNFAIP1 NA AC007491.1 CRNDE Oncogene NA NA NA NA ARRIBA 1 PT_MT27S7S4 +BS_VJAC9H58 VGLL3--CHD9 frameshift VGLL3 NA CHD9 NA NA Oncogene NA NA NA ARRIBA 1 PT_SABHZ7XX +BS_VJAC9H58 VGLL3--CHD9 in-frame VGLL3 NA CHD9 NA NA Oncogene NA NA NA ARRIBA 1 PT_SABHZ7XX +BS_VMEX27TN AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_5AF1501D +BS_VMMJYN8Z AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_WY8REZ3P +BS_VMMJYN8Z AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_WY8REZ3P +BS_VMMJYN8Z ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WY8REZ3P +BS_VMMJYN8Z KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_WY8REZ3P +BS_VMMJYN8Z KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_WY8REZ3P +BS_VMMJYN8Z KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WY8REZ3P +BS_VMMJYN8Z ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_WY8REZ3P +BS_VMQMGSJY PCNX1--DPF3 frameshift PCNX1 NA DPF3 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_63F63QY0 +BS_VMQMGSJY ZFPM2--AC027031.2 frameshift ZFPM2 NA AC027031.2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_63F63QY0 +BS_VNE0ZPBS AL050305.1/AL591501.1--DMD other AL050305.1 AL591501.1 DMD NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_F9F3E8YR +BS_VNE0ZPBS AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_F9F3E8YR +BS_VNE0ZPBS AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_F9F3E8YR +BS_VNE0ZPBS AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_F9F3E8YR +BS_VNE0ZPBS ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_F9F3E8YR +BS_VNE0ZPBS JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_F9F3E8YR +BS_VNE0ZPBS KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_F9F3E8YR +BS_VNE0ZPBS KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_F9F3E8YR +BS_VNE0ZPBS KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_F9F3E8YR +BS_VNK9XYV9 KIAA1549--KIAA1549 frameshift KIAA1549 NA KIAA1549 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_WYR1DVHX +BS_VNK9XYV9 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_WYR1DVHX +BS_VNWKNRY4 ADCK1/FXNP1--ADCK1 other ADCK1 FXNP1 ADCK1 NA Kinase Kinase NA NA NA ARRIBA 1 PT_EB0D3BXG +BS_VNWKNRY4 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_EB0D3BXG +BS_VNWKNRY4 SORBS2--AC009126.1 other SORBS2 NA AC009126.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_EB0D3BXG +BS_VP3C8WZT KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_962TCBVR +BS_VP3C8WZT WNK3--WNK3 in-frame WNK3 NA WNK3 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_962TCBVR +BS_VPBMDMQX PKN1--ARHGEF1 frameshift PKN1 NA ARHGEF1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_STRDJQ01 +BS_VPMKHW9X AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_WPYCXMDA +BS_VPMKHW9X AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_WPYCXMDA +BS_VPMKHW9X CNTN4--CNTN4 in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WPYCXMDA +BS_VPMKHW9X ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WPYCXMDA +BS_VPMKHW9X KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_WPYCXMDA +BS_VPMKHW9X KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_WPYCXMDA +BS_VPMKHW9X KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WPYCXMDA +BS_VPMKHW9X MCM9--MCM9 in-frame MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_WPYCXMDA +BS_VR7FR1NE KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_6MWPJ96F +BS_VTJ9ESSV AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_MA0J8DSN +BS_VTJ9ESSV AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_MA0J8DSN +BS_VTJ9ESSV ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_MA0J8DSN +BS_VTJ9ESSV ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_MA0J8DSN +BS_VTJ9ESSV KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_MA0J8DSN +BS_VTJ9ESSV KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_MA0J8DSN +BS_VTJ9ESSV KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_MA0J8DSN +BS_VVFBW0YH GTF2F2--PCDH17 in-frame GTF2F2 NA PCDH17 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_7QKGGMKV +BS_VVFBW0YH RRAS2--WNT9B/LINC01974 frameshift RRAS2 NA WNT9B LINC01974 Oncogene NA NA NA NA ARRIBA 1 PT_7QKGGMKV +BS_VVFBW0YH STK24--RPS10P21/SNORD37 frameshift STK24 NA RPS10P21 SNORD37 Kinase NA NA NA NA ARRIBA 1 PT_7QKGGMKV +BS_VVTHDRBD KIF26B--MYCL other KIF26B NA MYCL NA NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_Y76A7PBA +BS_VVTHDRBD OSBPL9--AL592045.1/MIXL1 frameshift OSBPL9 NA AL592045.1 MIXL1 NA NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_Y76A7PBA +BS_VW85Q4XJ KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_2YT37G8P +BS_VXHWZJDC ADIPOR2--ERC1 frameshift ADIPOR2 NA ERC1 NA NA CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_5X061J42 +BS_VXHWZJDC CLTCL1--AC245060.2/AC245060.4 frameshift CLTCL1 NA AC245060.2 AC245060.4 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_5X061J42 +BS_W1385R8Y AC008758.1--PRKACA in-frame AC008758.1 NA PRKACA NA NA CosmicCensus, Kinase NA NA NA ARRIBA 1 PT_Y585X1BS +BS_W1385R8Y ARNT2--MALL frameshift ARNT2 NA MALL NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Y585X1BS +BS_W1385R8Y CAMKK2--C22orf24 frameshift CAMKK2 NA C22orf24 NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_Y585X1BS +BS_W1385R8Y CAMKK2--YWHAH frameshift CAMKK2 NA YWHAH NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_Y585X1BS +BS_W1385R8Y LINC00322/LINC01679--TMPRSS3 other LINC00322 LINC01679 TMPRSS3 NA NA Oncogene NA NA NA ARRIBA 1 PT_Y585X1BS +BS_W1385R8Y PDE9A--CRYAA/LINC00322 frameshift PDE9A NA CRYAA LINC00322 NA Oncogene NA NA NA ARRIBA 1 PT_Y585X1BS +BS_W1385R8Y PTEN--LIPA other PTEN NA LIPA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_Y585X1BS +BS_W1385R8Y RGS2--PTEN other RGS2 NA PTEN NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA STARFUSION 1 PT_Y585X1BS +BS_W1385R8Y RGS2--PTEN in-frame RGS2 NA PTEN NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_Y585X1BS +BS_W1385R8Y RGS2--PTEN frameshift RGS2 NA PTEN NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_Y585X1BS +BS_W1385R8Y SRCAP--SRRM2 frameshift SRCAP NA SRRM2 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Y585X1BS +BS_W1385R8Y STAG2--AC083902.1 other STAG2 NA AC083902.1 NA CosmicCensus, Oncogene NA NA NA NA STARFUSION, ARRIBA 2 PT_Y585X1BS +BS_W1385R8Y STAG2--C4orf22 other STAG2 NA C4orf22 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_Y585X1BS +BS_W1385R8Y STAG2--MTTP other STAG2 NA MTTP NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_Y585X1BS +BS_W1385R8Y TMPRSS3--TRAPPC10 other TMPRSS3 NA TRAPPC10 NA Oncogene NA NA NA NA ARRIBA 1 PT_Y585X1BS +BS_W1385R8Y XAF1--E2F5 other XAF1 NA E2F5 NA TumorSuppressorGene, Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_Y585X1BS +BS_W1385R8Y ZNF564--PRKACA in-frame ZNF564 NA PRKACA NA TranscriptionFactor CosmicCensus, Kinase NA NA NA ARRIBA 1 PT_Y585X1BS +BS_W18SF91A AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_HBT0C66Y +BS_W18SF91A AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_HBT0C66Y +BS_W18SF91A CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_HBT0C66Y +BS_W18SF91A ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_HBT0C66Y +BS_W18SF91A KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_HBT0C66Y +BS_W18SF91A KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_HBT0C66Y +BS_W18SF91A KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_HBT0C66Y +BS_W18SF91A MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_HBT0C66Y +BS_W18SF91A RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_HBT0C66Y +BS_W18SF91A ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_HBT0C66Y +BS_W36RZSFA AL627309.5/FO538757.2--MUC17 other AL627309.5 FO538757.2 MUC17 NA NA Oncogene NA NA NA ARRIBA 1 PT_7TRGHZBK +BS_W36RZSFA RXRA--EPHB2 frameshift RXRA NA EPHB2 NA TranscriptionFactor Kinase, TumorSuppressorGene, Kinase NA NA NA ARRIBA 1 PT_7TRGHZBK +BS_W3R88RFP ABI1--SLX4IP frameshift ABI1 NA SLX4IP NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_2ECVKTTQ +BS_W3R88RFP AL138752.2--PSIP1 other AL138752.2 NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2ECVKTTQ +BS_W3R88RFP AL138752.2--PSIP1 in-frame AL138752.2 NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2ECVKTTQ +BS_W3R88RFP SHB--PSIP1 frameshift SHB NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2ECVKTTQ +BS_W3R88RFP SHB--PSIP1 other SHB NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2ECVKTTQ +BS_W3R88RFP SHB--PSIP1 in-frame SHB NA PSIP1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_2ECVKTTQ +BS_W4H1D4Y6 AC241585.2--PDE4DIP other AC241585.2 NA PDE4DIP NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 AHRR--AP000949.1/AP001116.1 frameshift AHRR NA AP000949.1 AP001116.1 TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 AL603840.1--MACF1 other AL603840.1 NA MACF1 NA NA Oncogene NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 AP003972.1--OPCML/AP001979.2 other AP003972.1 NA OPCML AP001979.2 NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 CCDC127--CTNND2 frameshift CCDC127 NA CTNND2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 CHST8--SOX5 other CHST8 NA SOX5 NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 CTNND2--LINC02223 frameshift CTNND2 NA LINC02223 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 CTNND2--PTPRS frameshift CTNND2 NA PTPRS NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 CXXC5--TMBIM6 other CXXC5 NA TMBIM6 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 DDR1--MRPS18B frameshift DDR1 NA MRPS18B NA Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 E2F6--PDIA6 in-frame E2F6 NA PDIA6 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 EPHB2--CSMD2 frameshift EPHB2 NA CSMD2 NA Kinase, TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 GAP43/LSAMP--LSAMP-AS1 other GAP43 LSAMP LSAMP-AS1 NA NA NA TumorSuppressorGene NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 GMEB1--AL020995.1 other GMEB1 NA AL020995.1 NA TranscriptionFactor NA NA NA NA STARFUSION 1 PT_X7HC5YCY +BS_W4H1D4Y6 GMEB1--AL020995.1 frameshift GMEB1 NA AL020995.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 HMG20A--AC016987.1 frameshift HMG20A NA AC016987.1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 HMG20A--AGBL1 frameshift HMG20A NA AGBL1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 HMG20A--ANKRD34C-AS1 other HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA STARFUSION 1 PT_X7HC5YCY +BS_W4H1D4Y6 HMG20A--ANKRD34C-AS1 frameshift HMG20A NA ANKRD34C-AS1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 IFNAR1--CTNND2 other IFNAR1 NA CTNND2 NA Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 LRRTM3--CTNNA3 frameshift LRRTM3 NA CTNNA3 NA NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 MAFF--POLR2F other MAFF NA POLR2F NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 MTAP--ADAMTSL1 frameshift MTAP NA ADAMTSL1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 PDCD6--AC122710.3/LINC02236 frameshift PDCD6 NA AC122710.3 LINC02236 Oncogene NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 PEAK1--KIAA1024/AC023968.2 other PEAK1 NA KIAA1024 AC023968.2 Kinase NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 RFX7--CYP19A1 other RFX7 NA CYP19A1 NA TranscriptionFactor Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_X7HC5YCY +BS_W4H1D4Y6 RFX7--GLDN other RFX7 NA GLDN NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 SLC12A7--PDCD6 frameshift SLC12A7 NA PDCD6 NA NA Oncogene NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 SLC6A3--AP000282.1 frameshift SLC6A3 NA AP000282.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 ST20--CEMIP other ST20 NA CEMIP NA TumorSuppressorGene NA NA NA NA STARFUSION 1 PT_X7HC5YCY +BS_W4H1D4Y6 ST20--CEMIP frameshift ST20 NA CEMIP NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 TIAM1--LINC01695 other TIAM1 NA LINC01695 NA Oncogene NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 TMBIM6--CXXC5 frameshift TMBIM6 NA CXXC5 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 TRIT1--AL603840.1 other TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA STARFUSION 1 PT_X7HC5YCY +BS_W4H1D4Y6 TRIT1--AL603840.1 frameshift TRIT1 NA AL603840.1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 URGCP--AC073176.1/UNC5B frameshift URGCP NA AC073176.1 UNC5B NA NA NA TumorSuppressorGene NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 URGCP-MRPS24--AC073176.1/UNC5B frameshift URGCP-MRPS24 NA AC073176.1 UNC5B NA NA NA TumorSuppressorGene NA ARRIBA 1 PT_X7HC5YCY +BS_W4H1D4Y6 ZNF568--LINC01343/AL513479.1 frameshift ZNF568 NA LINC01343 AL513479.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_X7HC5YCY +BS_W4HGV6E7 AC092747.1/STK38L--MED21 other AC092747.1 STK38L MED21 NA NA NA Oncogene, Kinase NA NA ARRIBA 1 PT_2C63FJAM +BS_W4HGV6E7 C6orf58--QKI frameshift C6orf58 NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_2C63FJAM +BS_W4HGV6E7 LINC01019--LINC01019/IRX1 other LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA ARRIBA 1 PT_2C63FJAM +BS_W4HGV6E7 MYO3A--MYO3A frameshift MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_2C63FJAM +BS_W4HGV6E7 PACRG--LINC00271/AL133319.1 frameshift PACRG NA LINC00271 AL133319.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_2C63FJAM +BS_W4HGV6E7 PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_2C63FJAM +BS_W4HGV6E7 QKI--C6orf58/AL592291.1 frameshift QKI NA C6orf58 AL592291.1 TumorSuppressorGene, CosmicCensus NA NA NA NA ARRIBA 1 PT_2C63FJAM +BS_W4HGV6E7 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_2C63FJAM +BS_W4HGV6E7 TP63--TP63 frameshift TP63 NA TP63 NA TumorSuppressorGene, CosmicCensus, TranscriptionFactor TumorSuppressorGene, CosmicCensus, TranscriptionFactor NA NA NA ARRIBA 1 PT_2C63FJAM +BS_W4HGV6E7 ZNF528--ZNF610/ZNF880 frameshift ZNF528 NA ZNF610 ZNF880 TranscriptionFactor TranscriptionFactor NA TranscriptionFactor NA ARRIBA 1 PT_2C63FJAM +BS_W60RQAKK ASH1L--CADM3 frameshift ASH1L NA CADM3 NA TranscriptionFactor TumorSuppressorGene NA NA NA ARRIBA 1 PT_CSZ9QA1N +BS_W60RQAKK CORO1C--API5 frameshift CORO1C NA API5 NA Oncogene NA NA NA NA ARRIBA 1 PT_CSZ9QA1N +BS_W60RQAKK CORO1C--HNRNPKP3/API5 frameshift CORO1C NA HNRNPKP3 API5 Oncogene NA NA NA NA ARRIBA 1 PT_CSZ9QA1N +BS_W60RQAKK ETV3--ASH1L frameshift ETV3 NA ASH1L NA Oncogene, TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_CSZ9QA1N +BS_W60RQAKK MPZL1--RABGAP1L frameshift MPZL1 NA RABGAP1L NA NA Oncogene NA NA NA ARRIBA 1 PT_CSZ9QA1N +BS_W60RQAKK NUMA1--UVRAG other NUMA1 NA UVRAG NA CosmicCensus, Oncogene TumorSuppressorGene NA NA NA ARRIBA 1 PT_CSZ9QA1N +BS_W60RQAKK PCDH9--DYNC2H1/AP002989.1 frameshift PCDH9 NA DYNC2H1 AP002989.1 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CSZ9QA1N +BS_W60RQAKK PCDH9--PDGFD frameshift PCDH9 NA PDGFD NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_CSZ9QA1N +BS_W60RQAKK RABGAP1L--ASH1L frameshift RABGAP1L NA ASH1L NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_CSZ9QA1N +BS_W60RQAKK UCK2--RABGAP1L frameshift UCK2 NA RABGAP1L NA NA Oncogene NA NA NA ARRIBA 1 PT_CSZ9QA1N +BS_W60RQAKK USP15--TMPO-AS1 frameshift USP15 NA TMPO-AS1 NA Oncogene NA NA NA NA ARRIBA 1 PT_CSZ9QA1N +BS_W644VEVE AC005865.2--AC007207.1/CCND2-AS1 other AC005865.2 NA AC007207.1 CCND2-AS1 NA NA NA Oncogene NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE AC005865.2--CCND2 other AC005865.2 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_XA98HG1C +BS_W644VEVE AC005865.2/LINC02417--CCND2 other AC005865.2 LINC02417 CCND2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE AC007207.1/CCND2-AS1--PARP11 other AC007207.1 CCND2-AS1 PARP11 NA NA NA Oncogene NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE B4GALNT3--CCND2 in-frame B4GALNT3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE B4GALNT3--CCND2 frameshift B4GALNT3 NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE B4GALNT3--CCND2-AS1 frameshift B4GALNT3 NA CCND2-AS1 NA NA Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--AC010145.1 frameshift CCND2 NA AC010145.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--AC010745.1/AC010745.2 frameshift CCND2 NA AC010745.1 AC010745.2 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--AC010880.1 frameshift CCND2 NA AC010880.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--AC113608.1/snoU13 frameshift CCND2 NA AC113608.1 snoU13 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--B4GALNT3 frameshift CCND2 NA B4GALNT3 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--B4GALNT3 in-frame CCND2 NA B4GALNT3 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--CRACR2A frameshift CCND2 NA CRACR2A NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--CRACR2A in-frame CCND2 NA CRACR2A NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--MYCNOS frameshift CCND2 NA MYCNOS NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--NINJ2 other CCND2 NA NINJ2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA, STARFUSION 2 PT_XA98HG1C +BS_W644VEVE CCND2--PRMT8 other CCND2 NA PRMT8 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--RN7SL104P/AC010145.1 frameshift CCND2 NA RN7SL104P AC010145.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--TSPAN9 frameshift CCND2 NA TSPAN9 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--TSPAN9 in-frame CCND2 NA TSPAN9 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--WNK1 frameshift CCND2 NA WNK1 NA CosmicCensus, Oncogene Kinase, Kinase NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--WNT5B frameshift CCND2 NA WNT5B NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2--WNT5B in-frame CCND2 NA WNT5B NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE CCND2-AS1--PRMT8 other CCND2-AS1 NA PRMT8 NA Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE EEFSEC--CCND2 other EEFSEC NA CCND2 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE ERC1--AC005842.1 frameshift ERC1 NA AC005842.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE ERC1--AC007207.1/CCND2-AS1 frameshift ERC1 NA AC007207.1 CCND2-AS1 CosmicCensus, Oncogene NA NA Oncogene NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE ERC1--AC010880.1/AC104623.1 frameshift ERC1 NA AC010880.1 AC104623.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE ERC1--AC130710.1 other ERC1 NA AC130710.1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE ERC1--CACNA1C other ERC1 NA CACNA1C NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE ERC1--CACNA1C in-frame ERC1 NA CACNA1C NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE ERC1--CCDC77 other ERC1 NA CCDC77 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE ERC1--CCND2 other ERC1 NA CCND2 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE ERC1--LINC02455/WNK1 other ERC1 NA LINC02455 WNK1 CosmicCensus, Oncogene NA NA Kinase, Kinase NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE HSPG2--AC068759.1 frameshift HSPG2 NA AC068759.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE MYCN--CCND2 frameshift MYCN NA CCND2 NA CosmicCensus, Oncogene, TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE NINJ2--CCND2-AS1 frameshift NINJ2 NA CCND2-AS1 NA NA Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE NMT1--RPS6KB1 frameshift NMT1 NA RPS6KB1 NA Oncogene Kinase NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE PARP11--AC007207.1/CCND2-AS1 frameshift PARP11 NA AC007207.1 CCND2-AS1 NA NA NA Oncogene NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE PARP11--ERC1 frameshift PARP11 NA ERC1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE RAD52--B4GALNT3 frameshift RAD52 NA B4GALNT3 NA Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE RAD52--WNT5B/MIR3649 other RAD52 NA WNT5B MIR3649 Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE TRAF3--TEX41 other TRAF3 NA TEX41 NA Oncogene NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE WNK1--AC007207.1/CCND2-AS1 frameshift WNK1 NA AC007207.1 CCND2-AS1 Kinase, Kinase NA NA Oncogene NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE WNK1--CCDC77 other WNK1 NA CCDC77 NA Kinase, Kinase NA NA NA TCGAFusion STARFUSION 1 PT_XA98HG1C +BS_W644VEVE WNK1--MYCNOS frameshift WNK1 NA MYCNOS NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W644VEVE WNK1--MYCNOS other WNK1 NA MYCNOS NA Kinase, Kinase NA NA NA NA STARFUSION 1 PT_XA98HG1C +BS_W644VEVE WNK1--RN7SL104P/AC010145.1 frameshift WNK1 NA RN7SL104P AC010145.1 Kinase, Kinase NA NA NA NA ARRIBA 1 PT_XA98HG1C +BS_W6AC5J3C USH2A--USH2A/ESRRG frameshift USH2A NA USH2A ESRRG NA NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_16EJ7BZ9 +BS_W7FP2G3F BRINP1--BRINP1 frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_GERCQ0JG +BS_W7FP2G3F RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_GERCQ0JG +BS_W7MFJZ5A AL162411.1--BNC2 other AL162411.1 NA BNC2 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_C5FKRB1P +BS_W7MFJZ5A ASPH--LRBA in-frame ASPH NA LRBA NA NA Oncogene NA NA NA ARRIBA 1 PT_C5FKRB1P +BS_W7MFJZ5A CTNNB1--CNN3 other CTNNB1 NA CNN3 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_C5FKRB1P +BS_W7MFJZ5A DDX58--GLDC frameshift DDX58 NA GLDC NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_C5FKRB1P +BS_W7MFJZ5A MLLT3--PSIP1/AL513423.1 frameshift MLLT3 NA PSIP1 AL513423.1 CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_C5FKRB1P +BS_W7MFJZ5A ZMYND19--GLIS3 frameshift ZMYND19 NA GLIS3 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_C5FKRB1P +BS_W80TJC27 BCOR--BX119917.1 other BCOR NA BX119917.1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_R6WWH1QX +BS_W80TJC27 BCOR--NHSL2 other BCOR NA NHSL2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_R6WWH1QX +BS_W80TJC27 C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_R6WWH1QX +BS_W80TJC27 CHKA--SLC35E1 other CHKA NA SLC35E1 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_R6WWH1QX +BS_W80TJC27 MEN1--CPAMD8 other MEN1 NA CPAMD8 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_R6WWH1QX +BS_W80TJC27 MYO9B--CHKA other MYO9B NA CHKA NA NA Oncogene, Kinase NA NA NA ARRIBA 1 PT_R6WWH1QX +BS_W97QQYKQ ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GKWWWJ0X +BS_W97QQYKQ JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_GKWWWJ0X +BS_W97QQYKQ KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_GKWWWJ0X +BS_W97QQYKQ PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GKWWWJ0X +BS_W9AT0MR7 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_8RB3EKNP +BS_W9AT0MR7 MAP4K3--PHLDA1 other MAP4K3 NA PHLDA1 NA Kinase NA NA NA NA ARRIBA 1 PT_8RB3EKNP +BS_W9N9844Q AC092920.1/MTND5P15--TBL1XR1 other AC092920.1 MTND5P15 TBL1XR1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_3CHB9PK5 +BS_W9N9844Q MMP16--CNBD1 frameshift MMP16 NA CNBD1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_3CHB9PK5 +BS_WAXJY4XQ GRIK2--NKAIN2 other GRIK2 NA NKAIN2 NA NA Oncogene NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_WAXJY4XQ GRIK2--NKAIN2 frameshift GRIK2 NA NKAIN2 NA NA Oncogene NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_WAXJY4XQ KLHL7--RNF216 frameshift KLHL7 NA RNF216 NA NA Oncogene NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_WAXJY4XQ VCAN--FBXL17 frameshift VCAN NA FBXL17 NA Oncogene NA NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_WCRKYV0T AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_GVDMG7KC +BS_WCRKYV0T AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_GVDMG7KC +BS_WCRKYV0T AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_GVDMG7KC +BS_WCRKYV0T CNTN4--CNTN4 in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GVDMG7KC +BS_WCRKYV0T CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_GVDMG7KC +BS_WCRKYV0T CYB5R4--CYB5R4 frameshift CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GVDMG7KC +BS_WCRKYV0T DCLK2--DCLK2 frameshift DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_GVDMG7KC +BS_WCRKYV0T ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GVDMG7KC +BS_WCRKYV0T KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_GVDMG7KC +BS_WCRKYV0T KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_GVDMG7KC +BS_WCRKYV0T KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_GVDMG7KC +BS_WCRKYV0T MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_GVDMG7KC +BS_WCRKYV0T POU6F2--POU6F2 frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_GVDMG7KC +BS_WCRKYV0T RALGDS--AL807752.7 frameshift RALGDS NA AL807752.7 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_GVDMG7KC +BS_WCRKYV0T RALGDS--LCNL1 frameshift RALGDS NA LCNL1 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_GVDMG7KC +BS_WCRKYV0T RGS7--RGS7 frameshift RGS7 NA RGS7 NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_GVDMG7KC +BS_WFD0GE5X MYO3A--MYO3A frameshift MYO3A NA MYO3A NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_WKNKNYHH +BS_WFD0GE5X RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_WKNKNYHH +BS_WG203ECV FADS2--CD74 frameshift FADS2 NA CD74 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_962TCBVR +BS_WG203ECV KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_962TCBVR +BS_WG203ECV PSAP--RGMA frameshift PSAP NA RGMA NA Oncogene NA NA NA NA ARRIBA 1 PT_962TCBVR +BS_WGK8ZMVA AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DNAJYFZT +BS_WGK8ZMVA AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DNAJYFZT +BS_WGK8ZMVA ASXL1--SNRPN frameshift ASXL1 NA SNRPN NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_DNAJYFZT +BS_WGK8ZMVA ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DNAJYFZT +BS_WGK8ZMVA KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DNAJYFZT +BS_WGK8ZMVA KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DNAJYFZT +BS_WGK8ZMVA KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DNAJYFZT +BS_WGK8ZMVA SGMS1--ARHGAP22 other SGMS1 NA ARHGAP22 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_DNAJYFZT +BS_WH5HDE0A JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_H3WWDMW9 +BS_WH5HDE0A MAPK8--KCNK18 other MAPK8 NA KCNK18 NA Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_H3WWDMW9 +BS_WH5HDE0A MAPK8--MIR3663HG/RPL12P26 other MAPK8 NA MIR3663HG RPL12P26 Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_H3WWDMW9 +BS_WH8G4VFB AC022387.1--DDR2 other AC022387.1 NA DDR2 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA ARRIBA 1 PT_R4T1V1K4 +BS_WH8G4VFB CABIN1--MIF in-frame CABIN1 NA MIF NA NA Oncogene NA NA NA ARRIBA 1 PT_R4T1V1K4 +BS_WH8G4VFB CREB3L2--TSC22D4 in-frame CREB3L2 NA TSC22D4 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_R4T1V1K4 +BS_WH8G4VFB CUX1--SSPO frameshift CUX1 NA SSPO NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_R4T1V1K4 +BS_WH8G4VFB CUX1--SSPO in-frame CUX1 NA SSPO NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_R4T1V1K4 +BS_WH8G4VFB GIGYF1--SND1/MIR129-1 frameshift GIGYF1 NA SND1 MIR129-1 NA CosmicCensus NA TumorSuppressorGene NA ARRIBA 1 PT_R4T1V1K4 +BS_WH8G4VFB KMT2C--C7orf61 frameshift KMT2C NA C7orf61 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_R4T1V1K4 +BS_WH8G4VFB KMT2C--TSC22D4 in-frame KMT2C NA TSC22D4 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_R4T1V1K4 +BS_WH8G4VFB KMT2C--TSC22D4 frameshift KMT2C NA TSC22D4 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_R4T1V1K4 +BS_WH8G4VFB TCAF1--CUX1 frameshift TCAF1 NA CUX1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_R4T1V1K4 +BS_WJ9H4NZZ GRIK2--NKAIN2 frameshift GRIK2 NA NKAIN2 NA NA Oncogene NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_WJ9H4NZZ KMT2C--PTPRS in-frame KMT2C NA PTPRS NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_8GN3TQRM +BS_WJGFDRWK EWSR1--FLI1 in-frame EWSR1 NA FLI1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_PJFTMJ6H +BS_WKESC3XN CENPF--RD3/AC105275.1/SLC30A1 frameshift CENPF NA RD3 AC105275.1 Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_WKESC3XN CUL2--LINC01724/KCNT2 other CUL2 NA LINC01724 KCNT2 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_WKESC3XN DENND1B--DPT frameshift DENND1B NA DPT NA NA Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_WKESC3XN ITGB1--KIF14 other ITGB1 NA KIF14 NA TumorSuppressorGene Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_WKESC3XN MAPKAPK2--PTCHD3/RAB18 frameshift MAPKAPK2 NA PTCHD3 RAB18 Kinase, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_WKESC3XN NRCAM--AC002383.1/RNU6-274P other NRCAM NA AC002383.1 RNU6-274P TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_WKESC3XN PTPN12--PLXNA4 frameshift PTPN12 NA PLXNA4 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_WKESC3XN PTPN12--PLXNA4 in-frame PTPN12 NA PLXNA4 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_WKESC3XN RBM34--AL391645.1 frameshift RBM34 NA AL391645.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_WKESC3XN RSF1--CFH/CFHR3 frameshift RSF1 NA CFH CFHR3 Oncogene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_WKESC3XN SMG6--AC144836.1/BHLHA9 other SMG6 NA AC144836.1 BHLHA9 Oncogene NA NA TranscriptionFactor NA ARRIBA 1 PT_1H2REHT2 +BS_WKESC3XN SOX13--LINC01717/LINC01774 other SOX13 NA LINC01717 LINC01774 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_WKESC3XN SRGAP2--KIF14 frameshift SRGAP2 NA KIF14 NA NA Oncogene NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_WKESC3XN STK32B--IFITM9P frameshift STK32B NA IFITM9P NA Kinase NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_WKESC3XN UBE2J2--HFM1/CDC7 frameshift UBE2J2 NA HFM1 CDC7 NA NA NA Kinase, Kinase NA ARRIBA 1 PT_1H2REHT2 +BS_WKESC3XN VPS53--MIS12 frameshift VPS53 NA MIS12 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_WKESC3XN ZNF827--LSM6 frameshift ZNF827 NA LSM6 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_1H2REHT2 +BS_WMEHNDSK ASAP1--NDRG1 other ASAP1 NA NDRG1 NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK EFR3A--HNF4G/RNU2-54P frameshift EFR3A NA HNF4G RNU2-54P NA TranscriptionFactor NA NA NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK ERBB4--ERBB4 frameshift ERBB4 NA ERBB4 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK MTSS1--CASC8 frameshift MTSS1 NA CASC8 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK MTSS1--CASC8/CASC11 other MTSS1 NA CASC8 CASC11 TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK MTSS1--FAM135B other MTSS1 NA FAM135B NA TumorSuppressorGene CosmicCensus NA NA NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK PVT1_1--FAM135B other PVT1_1 NA FAM135B NA NA CosmicCensus NA NA NA ARRIBA, STARFUSION 2 PT_B54PH840 +BS_WMEHNDSK PVT1_1--ZFAT other PVT1_1 NA ZFAT NA NA TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_B54PH840 +BS_WMEHNDSK PVT1--AC009446.1 other PVT1 NA AC009446.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK PVT1--FAM135B other PVT1 NA FAM135B NA Oncogene CosmicCensus NA NA NA ARRIBA, STARFUSION 2 PT_B54PH840 +BS_WMEHNDSK PVT1--LINC01111 other PVT1 NA LINC01111 NA Oncogene NA NA NA NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK PVT1--NDRG1 other PVT1 NA NDRG1 NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK PVT1--ZFAT other PVT1 NA ZFAT NA Oncogene TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_B54PH840 +BS_WMEHNDSK RNF139--NSMCE2 in-frame RNF139 NA NSMCE2 NA Oncogene NA NA NA NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK SQLE--PVT1 frameshift SQLE NA PVT1 NA NA Oncogene NA NA NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK SQLE--TRIB1/AC091114.1 frameshift SQLE NA TRIB1 AC091114.1 NA Kinase NA NA NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK ST3GAL1--PVT1 other ST3GAL1 NA PVT1 NA NA Oncogene NA NA NA ARRIBA, STARFUSION 2 PT_B54PH840 +BS_WMEHNDSK TATDN1--AC105180.1/ZFAT frameshift TATDN1 NA AC105180.1 ZFAT NA NA NA TranscriptionFactor NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK ZFAT--AC079098.1/AC013546.1 frameshift ZFAT NA AC079098.1 AC013546.1 TranscriptionFactor NA NA NA NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK ZFAT--AC105180.1/ZFAT other ZFAT NA AC105180.1 ZFAT TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK ZFAT--CASC11 other ZFAT NA CASC11 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_B54PH840 +BS_WMEHNDSK ZFAT--HNF4G/RNU2-54P other ZFAT NA HNF4G RNU2-54P TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_B54PH840 +BS_WRQHPSXQ BRINP1--BRINP1 frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_4159VCJY +BS_WRQHPSXQ PATJ--PATJ in-frame PATJ NA PATJ NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_4159VCJY +BS_WRQHPSXQ PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_4159VCJY +BS_WSQMAA33 LCOR--AKAP3 other LCOR NA AKAP3 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_92YX7KK9 +BS_WSQMAA33 OBSCN--OBSCN in-frame OBSCN NA OBSCN NA Kinase, Oncogene, Kinase Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_92YX7KK9 +BS_WSQMAA33 PHKA1--LMTK2 other PHKA1 NA LMTK2 NA NA Kinase NA NA NA ARRIBA 1 PT_92YX7KK9 +BS_WSQMAA33 SNAPC3--RPL7P33/SNAPC3 frameshift SNAPC3 NA RPL7P33 SNAPC3 Oncogene NA NA Oncogene NA ARRIBA 1 PT_92YX7KK9 +BS_WSQMAA33 TAF1--AL590762.3/AL590762.2 frameshift TAF1 NA AL590762.3 AL590762.2 Kinase NA NA NA NA ARRIBA 1 PT_92YX7KK9 +BS_WSQMAA33 TEX11--NONO in-frame TEX11 NA NONO NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_92YX7KK9 +BS_WSQMAA33 UVRAG--UVRAG frameshift UVRAG NA UVRAG NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_92YX7KK9 +BS_WVW3W6ZB PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_M1RYN7B0 +BS_WYERXS4G MAML2--AP000787.1/AP001790.1 other MAML2 NA AP000787.1 AP001790.1 CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_46F28BFH +BS_WYERXS4G MAML2--NHSL2 frameshift MAML2 NA NHSL2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_46F28BFH +BS_WYERXS4G YAP1--MAML2 in-frame YAP1 NA MAML2 NA TumorSuppressorGene, Oncogene CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_46F28BFH +BS_WYG77VVP AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DH8A0SNQ +BS_WYG77VVP AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_DH8A0SNQ +BS_WYG77VVP IGH@--PNPLA7 other IGH@ NA PNPLA7 NA Oncogene NA NA NA NA STARFUSION 1 PT_DH8A0SNQ +BS_WYG77VVP KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DH8A0SNQ +BS_WYG77VVP KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_DH8A0SNQ +BS_WYG77VVP KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_DH8A0SNQ +BS_X0F9AYEC CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_Y8HSH496 +BS_X0F9AYEC ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_Y8HSH496 +BS_X0F9AYEC MTSS1--MTSS1 frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y8HSH496 +BS_X0XXN9BK ABL2--ACBD6 frameshift ABL2 NA ACBD6 NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_Z4BF2NSB +BS_X0XXN9BK ASAP2--TRIB2/AC064875.1 frameshift ASAP2 NA TRIB2 AC064875.1 NA Kinase NA NA NA ARRIBA 1 PT_Z4BF2NSB +BS_X0XXN9BK CNNM4--BHMT other CNNM4 NA BHMT NA Oncogene NA NA NA NA ARRIBA 1 PT_Z4BF2NSB +BS_X0XXN9BK DIP2A--DUX4L2/DUX4 frameshift DIP2A NA DUX4L2 DUX4 NA NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_Z4BF2NSB +BS_X0XXN9BK FOXO3--AL356967.1/HACE1 frameshift FOXO3 NA AL356967.1 HACE1 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA TumorSuppressorGene NA ARRIBA 1 PT_Z4BF2NSB +BS_X0XXN9BK FOXO3--NPM1P10/AL356967.1 frameshift FOXO3 NA NPM1P10 AL356967.1 TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4BF2NSB +BS_X0XXN9BK OSTM1--QKI other OSTM1 NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_Z4BF2NSB +BS_X0XXN9BK PRKCE--LINC01862/AC243312.1 frameshift PRKCE NA LINC01862 AC243312.1 TumorSuppressorGene, Kinase NA NA NA NA ARRIBA 1 PT_Z4BF2NSB +BS_X0XXN9BK PTPRT--NLGN1 frameshift PTPRT NA NLGN1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_Z4BF2NSB +BS_X0XXN9BK TP73--C1orf174 other TP73 NA C1orf174 NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA NA STARFUSION, ARRIBA 2 PT_Z4BF2NSB +BS_X0XXN9BK ZNF385D--CNTN3 frameshift ZNF385D NA CNTN3 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4BF2NSB +BS_X0XXN9BK ZNF704--AC036214.3 other ZNF704 NA AC036214.3 NA TranscriptionFactor NA NA NA NA STARFUSION, ARRIBA 2 PT_Z4BF2NSB +BS_X0XXN9BK ZNF704--AC036214.3 in-frame ZNF704 NA AC036214.3 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4BF2NSB +BS_X0XXN9BK ZNF704--MRPS28 other ZNF704 NA MRPS28 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_Z4BF2NSB +BS_X16PENSA KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_50ZFWMZE +BS_X16PENSA PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_50ZFWMZE +BS_X16PENSA RFX4--RFX4 in-frame RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_50ZFWMZE +BS_X23724NJ BRINP1--BRINP1 frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_Y8RNS9JE +BS_X23724NJ CDH20--CDH20 frameshift CDH20 NA CDH20 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_Y8RNS9JE +BS_X23724NJ CLU--AC124242.1/NAT1 frameshift CLU NA AC124242.1 NAT1 TumorSuppressorGene, Oncogene NA NA Oncogene NA ARRIBA 1 PT_Y8RNS9JE +BS_X23724NJ GALK2--AC114781.4/HELQ frameshift GALK2 NA AC114781.4 HELQ Kinase NA NA NA NA ARRIBA 1 PT_Y8RNS9JE +BS_X23724NJ LINC00511--ZNF750 other LINC00511 NA ZNF750 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_Y8RNS9JE +BS_X23724NJ S100B--SLC10A2/LINC01309 frameshift S100B NA SLC10A2 LINC01309 Oncogene NA NA NA NA ARRIBA 1 PT_Y8RNS9JE +BS_X23724NJ SEPT9--SRP68 frameshift SEPT9 NA SRP68 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_Y8RNS9JE +BS_X23724NJ SEPT9--SRP68 in-frame SEPT9 NA SRP68 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_Y8RNS9JE +BS_X23724NJ VEZT--ANKS1B in-frame VEZT NA ANKS1B NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_Y8RNS9JE +BS_X2QTK3QD NF2--ADCY8 frameshift NF2 NA ADCY8 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_T2M1338J +BS_X2QTK3QD NF2--ADCY8/AC087341.1 frameshift NF2 NA ADCY8 AC087341.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_T2M1338J +BS_X2QTK3QD NSD1--SLIT3 frameshift NSD1 NA SLIT3 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_T2M1338J +BS_X2QTK3QD PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_T2M1338J +BS_X4DD4KSZ ARHGAP42--YAP1 other ARHGAP42 NA YAP1 NA NA TumorSuppressorGene, Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_A06JR0E5 +BS_X4DD4KSZ PLEKHG3--FUT8 other PLEKHG3 NA FUT8 NA NA Oncogene NA NA NA STARFUSION, ARRIBA 2 PT_A06JR0E5 +BS_X4DD4KSZ REV3L--FYN frameshift REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_A06JR0E5 +BS_X67GTEM6 ECT2L--ECT2L frameshift ECT2L NA ECT2L NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_F9G665B1 +BS_X67GTEM6 RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_F9G665B1 +BS_X9EGD530 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_YGN06RPZ +BS_XBQZYS8G BCL10--CRIM1 frameshift BCL10 NA CRIM1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_W7FK539G +BS_XBQZYS8G BCL10--FEZ2 frameshift BCL10 NA FEZ2 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_W7FK539G +BS_XBQZYS8G MELK--MELK frameshift MELK NA MELK NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_W7FK539G +BS_XF0ZX2B3 AIP--RCN1 other AIP NA RCN1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_GAM3E6M3 +BS_XF0ZX2B3 C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_GAM3E6M3 +BS_XF0ZX2B3 NEK10--NEK10 frameshift NEK10 NA NEK10 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_GAM3E6M3 +BS_XGDPK33A BCL2L1--SMDT1 frameshift BCL2L1 NA SMDT1 NA Oncogene NA NA NA NA ARRIBA 1 PT_G16VK7FR +BS_XGDPK33A NFATC1--SALL3 in-frame NFATC1 NA SALL3 NA Oncogene, TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_G16VK7FR +BS_XGDPK33A NUP160--AC023232.1/PTPRJ frameshift NUP160 NA AC023232.1 PTPRJ NA NA NA TumorSuppressorGene, Oncogene NA ARRIBA 1 PT_G16VK7FR +BS_XGSA3GQE KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_HV6C0T34 +BS_XHCYEE2S SMAD4/AC090330.1--LINC01630 other SMAD4 AC090330.1 LINC01630 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_NEB4WEAT +BS_XJTW0P8P AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_6DB7B9WV +BS_XJTW0P8P CYB5R4--CYB5R4 frameshift CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_6DB7B9WV +BS_XJTW0P8P ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_6DB7B9WV +BS_XJTW0P8P JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_6DB7B9WV +BS_XJTW0P8P MCM9--MCM9 other MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_6DB7B9WV +BS_XJTW0P8P STK31--STK31 in-frame STK31 NA STK31 NA Kinase Kinase NA NA NA ARRIBA 1 PT_6DB7B9WV +BS_XKKB4MZV KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_RV0RDER2 +BS_XZM79E42 GLIS2--ABAT other GLIS2 NA ABAT NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_2JDDX6TJ +BS_XZM79E42 LMF1--RBFOX1 other LMF1 NA RBFOX1 NA Oncogene NA NA NA NA ARRIBA 1 PT_2JDDX6TJ +BS_XZM79E42 MCF2L2--WWTR1 frameshift MCF2L2 NA WWTR1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_2JDDX6TJ +BS_XZM79E42 RIOK3--ABAT frameshift RIOK3 NA ABAT NA Kinase NA NA NA NA ARRIBA 1 PT_2JDDX6TJ +BS_XZM79E42 RIOK3--TMEM186 frameshift RIOK3 NA TMEM186 NA Kinase NA NA NA NA ARRIBA 1 PT_2JDDX6TJ +BS_XZM79E42 RIOK3--TMEM186 in-frame RIOK3 NA TMEM186 NA Kinase NA NA NA NA ARRIBA 1 PT_2JDDX6TJ +BS_XZM79E42 WWTR1--LHPP in-frame WWTR1 NA LHPP NA CosmicCensus NA NA NA NA ARRIBA 1 PT_2JDDX6TJ +BS_XZTV0J8W CDC42BPB--SETBP1 other CDC42BPB NA SETBP1 NA Kinase CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_HJMP6PH2 +BS_Y0PCBNJV KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA, STARFUSION 2 PT_S2CXXZCF +BS_Y3G1X98S ADD3--SNRPGP12/MXI1 other ADD3 NA SNRPGP12 MXI1 Oncogene NA NA TumorSuppressorGene, Oncogene, TranscriptionFactor NA ARRIBA 1 PT_7M2PGCBV +BS_Y3G1X98S BCL9--FAM189B other BCL9 NA FAM189B NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_7M2PGCBV +BS_Y3G1X98S EHMT1--UNC79 in-frame EHMT1 NA UNC79 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7M2PGCBV +BS_Y3G1X98S FOXP1--AP2M1 other FOXP1 NA AP2M1 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA, STARFUSION 2 PT_7M2PGCBV +BS_Y3G1X98S RNF216--VPS41 in-frame RNF216 NA VPS41 NA Oncogene NA NA NA NA ARRIBA 1 PT_7M2PGCBV +BS_Y3G1X98S ST6GAL1--ROPN1 in-frame ST6GAL1 NA ROPN1 NA Oncogene NA NA NA NA ARRIBA 1 PT_7M2PGCBV +BS_Y3G1X98S TPM3--PKLR in-frame TPM3 NA PKLR NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_7M2PGCBV +BS_Y3G1X98S VCL--MIR34AHG frameshift VCL NA MIR34AHG NA Oncogene NA NA NA NA ARRIBA 1 PT_7M2PGCBV +BS_Y3G1X98S ZBTB16--FXYD6 in-frame ZBTB16 NA FXYD6 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7M2PGCBV +BS_Y3G1X98S ZBTB16--FXYD6-FXYD2 frameshift ZBTB16 NA FXYD6-FXYD2 NA TumorSuppressorGene, CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7M2PGCBV +BS_Y3G1X98S ZBTB7B--UBAP2L frameshift ZBTB7B NA UBAP2L NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_7M2PGCBV +BS_Y7F9E2E9 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_ZZTQQVCT +BS_Y7F9E2E9 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZZTQQVCT +BS_Y7F9E2E9 FPGT-TNNI3K--FPGT-TNNI3K frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_ZZTQQVCT +BS_Y7F9E2E9 PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZZTQQVCT +BS_Y8D1F5WW AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_ABMAQYY2 +BS_Y8D1F5WW GK5--ATR frameshift GK5 NA ATR NA NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_ABMAQYY2 +BS_Y8D1F5WW PCDH17--FRY frameshift PCDH17 NA FRY NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_ABMAQYY2 +BS_Y8D1F5WW SNORA68/uc_338--DACH1 other SNORA68 uc_338 DACH1 NA NA TumorSuppressorGene, TranscriptionFactor NA NA NA ARRIBA 1 PT_ABMAQYY2 +BS_Y8D1F5WW ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_ABMAQYY2 +BS_YB07VF1X AUTS2--ZNF268 frameshift AUTS2 NA ZNF268 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_HFQNKP5X +BS_YB07VF1X DENND1A--TFAP4 frameshift DENND1A NA TFAP4 NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_HFQNKP5X +BS_YB07VF1X PTK2--AARD/SLC30A8 frameshift PTK2 NA AARD SLC30A8 Kinase NA NA NA NA ARRIBA 1 PT_HFQNKP5X +BS_YB07VF1X RNF213--HSPG2 frameshift RNF213 NA HSPG2 NA CosmicCensus, Oncogene Oncogene NA NA NA ARRIBA 1 PT_HFQNKP5X +BS_YB07VF1X TFAP4/GLIS2--SH3GLB2 other TFAP4 GLIS2 SH3GLB2 NA Oncogene, TranscriptionFactor NA TranscriptionFactor NA NA ARRIBA 1 PT_HFQNKP5X +BS_YB07VF1X TTF1--NUP188 other TTF1 NA NUP188 NA TumorSuppressorGene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_HFQNKP5X +BS_YB2RXRHT AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_H45M7M2T +BS_YB2RXRHT AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_H45M7M2T +BS_YB2RXRHT CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_H45M7M2T +BS_YB2RXRHT DCLK2--DCLK2 frameshift DCLK2 NA DCLK2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_H45M7M2T +BS_YB2RXRHT ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_H45M7M2T +BS_YB2RXRHT IDNK/UBQLN1--UBQLN1 other IDNK UBQLN1 UBQLN1 NA Oncogene NA NA NA NA ARRIBA 1 PT_H45M7M2T +BS_YB2RXRHT JAZF1--DPY19L2P3 frameshift JAZF1 NA DPY19L2P3 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_H45M7M2T +BS_YB2RXRHT KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_H45M7M2T +BS_YB2RXRHT KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_H45M7M2T +BS_YB2RXRHT KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_H45M7M2T +BS_YB2RXRHT MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_H45M7M2T +BS_YB2RXRHT RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_H45M7M2T +BS_YB2RXRHT SND1--LHFPL3 frameshift SND1 NA LHFPL3 NA CosmicCensus NA NA NA NA ARRIBA 1 PT_H45M7M2T +BS_YB2RXRHT TAX1BP1--BRAF in-frame TAX1BP1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_H45M7M2T +BS_YB2RXRHT TRIM24--BRAF other TRIM24 NA BRAF NA TumorSuppressorGene, CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_H45M7M2T +BS_YBJBSRHV ARHGAP35--AP2S1/ARHGAP35 frameshift ARHGAP35 NA AP2S1 ARHGAP35 TranscriptionFactor NA NA TranscriptionFactor NA ARRIBA 1 PT_9CSZBV2P +BS_YBJBSRHV KIAA1191--SOX30 frameshift KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_9CSZBV2P +BS_YBJBSRHV KIAA1191--SOX30 in-frame KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_9CSZBV2P +BS_YBJBSRHV KIAA1191--SOX30 other KIAA1191 NA SOX30 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_9CSZBV2P +BS_YBJBSRHV PALM--AC005256.1/ONECUT3 other PALM NA AC005256.1 ONECUT3 NA NA NA TranscriptionFactor NA ARRIBA 1 PT_9CSZBV2P +BS_YBJBSRHV SPRED1--NPY1R frameshift SPRED1 NA NPY1R NA NA Oncogene NA NA NA ARRIBA 1 PT_9CSZBV2P +BS_YBJBSRHV UNC79--UNC79 frameshift UNC79 NA UNC79 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_9CSZBV2P +BS_YBJBSRHV ZC4H2--AL627224.1/FOXR2 frameshift ZC4H2 NA AL627224.1 FOXR2 NA NA NA TranscriptionFactor, Oncogene NA ARRIBA 1 PT_9CSZBV2P +BS_YBJBSRHV ZC4H2--FOXR2 frameshift ZC4H2 NA FOXR2 NA NA TranscriptionFactor, Oncogene NA NA NA ARRIBA 1 PT_9CSZBV2P +BS_YDEVMD24 ZNF141--ATM frameshift ZNF141 NA ATM NA TranscriptionFactor Kinase, TumorSuppressorGene, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_NK8A49X5 +BS_YE1MAQYJ LINC01019--LINC01019/IRX1 other LINC01019 NA LINC01019 IRX1 NA NA NA TumorSuppressorGene, TranscriptionFactor NA ARRIBA 1 PT_ZZRBX5JT +BS_YEB88D32 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_N56EYD4Z +BS_YEB88D32 PRRC2B--GFI1B other PRRC2B NA GFI1B NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_N56EYD4Z +BS_YEQVW4ND ABL1--PTTG1 frameshift ABL1 NA PTTG1 NA Kinase, CosmicCensus, Oncogene, Kinase Oncogene NA NA NA ARRIBA 1 PT_NA8NZ0BN +BS_YEQVW4ND BACE2--ZNF8 frameshift BACE2 NA ZNF8 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_NA8NZ0BN +BS_YEQVW4ND ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NA8NZ0BN +BS_YEQVW4ND RASSF8--AC069208.1 other RASSF8 NA AC069208.1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_NA8NZ0BN +BS_YEQVW4ND RASSF8--SOX5-AS1 other RASSF8 NA SOX5-AS1 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_NA8NZ0BN +BS_YEQVW4ND RMRP--C1orf61 other RMRP NA C1orf61 NA Oncogene NA NA NA NA ARRIBA 1 PT_NA8NZ0BN +BS_YEQVW4ND UAP1/DDR2--UAP1 other UAP1 DDR2 UAP1 NA NA NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA ARRIBA 1 PT_NA8NZ0BN +BS_YEQVW4ND ZNF536--ARHGAP26 other ZNF536 NA ARHGAP26 NA TranscriptionFactor CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_NA8NZ0BN +BS_YETBN0RQ ASH2L--LIN54 other ASH2L NA LIN54 NA NA TranscriptionFactor NA NA NA ARRIBA 1 PT_17NG0KW3 +BS_YEW22W35 RB1--LINC01881 frameshift RB1 NA LINC01881 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_9N0SR1D7 +BS_YMAJC22S AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_ZMKMKCFQ +BS_YMAJC22S AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_ZMKMKCFQ +BS_YMAJC22S ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZMKMKCFQ +BS_YMAJC22S KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_ZMKMKCFQ +BS_YMAJC22S KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_ZMKMKCFQ +BS_YMAJC22S KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_ZMKMKCFQ +BS_YNEQJ6AH AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_NS1F6DT8 +BS_YNEQJ6AH AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_NS1F6DT8 +BS_YNEQJ6AH ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NS1F6DT8 +BS_YNEQJ6AH KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_NS1F6DT8 +BS_YNEQJ6AH KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_NS1F6DT8 +BS_YNEQJ6AH KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_NS1F6DT8 +BS_YVMEEBKC CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_DMHFS0HX +BS_YVMEEBKC KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_DMHFS0HX +BS_YY5B2XDD CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_1KEER2Q1 +BS_YY5B2XDD KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_1KEER2Q1 +BS_YZ2Z1Q6Y KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_TH18S0JQ +BS_Z0AVVB1V KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_SJEG0MKD +BS_Z1A875MW ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_D9NTSYSC +BS_Z1A875MW HOXA3--LRRC61 other HOXA3 NA LRRC61 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_D9NTSYSC +BS_Z2NWPQKF AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_YY7CRV21 +BS_Z2NWPQKF AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_YY7CRV21 +BS_Z2NWPQKF ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_YY7CRV21 +BS_Z2NWPQKF KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_YY7CRV21 +BS_Z2NWPQKF KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_YY7CRV21 +BS_Z2NWPQKF KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_YY7CRV21 +BS_Z2NWPQKF MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_YY7CRV21 +BS_Z2NWPQKF RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_YY7CRV21 +BS_Z3RCA1T9 ASH1L--BNIP3P41 frameshift ASH1L NA BNIP3P41 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_C9YDTZPA +BS_Z3RCA1T9 ASH1L--DUX4L2/DUX4 frameshift ASH1L NA DUX4L2 DUX4 TranscriptionFactor NA NA Oncogene, TranscriptionFactor NA ARRIBA 1 PT_C9YDTZPA +BS_Z3RCA1T9 MBP--QKI frameshift MBP NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_C9YDTZPA +BS_Z3RCA1T9 MBP--QKI in-frame MBP NA QKI NA NA TumorSuppressorGene, CosmicCensus NA NA NA ARRIBA 1 PT_C9YDTZPA +BS_Z3RCA1T9 MMP16--CNBD1 frameshift MMP16 NA CNBD1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_C9YDTZPA +BS_Z3RCA1T9 PVT1--CCDC26 other PVT1 NA CCDC26 NA Oncogene NA NA NA NA ARRIBA 1 PT_C9YDTZPA +BS_Z3RCA1T9 REV3L--FYN frameshift REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_C9YDTZPA +BS_Z3RCA1T9 REV3L--FYN in-frame REV3L NA FYN NA NA Kinase, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_C9YDTZPA +BS_Z3RCA1T9 TNR--RFWD2 other TNR NA RFWD2 NA Oncogene TumorSuppressorGene NA NA TCGAFusion ARRIBA 1 PT_C9YDTZPA +BS_Z45HD492 JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_T3REPTTC +BS_Z6BWR941 AL445673.1--PRRX1/MROH9 other AL445673.1 NA PRRX1 MROH9 NA CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_YJGTKDV0 +BS_Z6BWR941 CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_YJGTKDV0 +BS_Z6BWR941 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_YJGTKDV0 +BS_Z6MC4N8D ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_3PSG2DQT +BS_Z72QAZC7 SNTG2--NUMA1 other SNTG2 NA NUMA1 NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_HJA1ZYS1 +BS_Z7890YNR C11orf95--RELA in-frame C11orf95 NA RELA NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA, STARFUSION 2 PT_99S5BPE3 +BS_Z7890YNR HOXC10--TRHDE frameshift HOXC10 NA TRHDE NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_99S5BPE3 +BS_Z7890YNR RBFOX2--OPCML frameshift RBFOX2 NA OPCML NA NA TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_99S5BPE3 +BS_Z7890YNR SOX5--DUSP16 frameshift SOX5 NA DUSP16 NA Oncogene, TranscriptionFactor NA NA NA NA ARRIBA 1 PT_99S5BPE3 +BS_Z7PKVY9J AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_M0AP3Z15 +BS_Z7PKVY9J JAK2--JAK2 frameshift JAK2 NA JAK2 NA Kinase, CosmicCensus, Oncogene, Kinase Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_M0AP3Z15 +BS_Z7PKVY9J MTSS1--CLU frameshift MTSS1 NA CLU NA TumorSuppressorGene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_M0AP3Z15 +BS_Z7PKVY9J RAB31--CBLB/AC079382.1 other RAB31 NA CBLB AC079382.1 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_M0AP3Z15 +BS_Z7PKVY9J WDR82--PBRM1 other WDR82 NA PBRM1 NA Oncogene TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_M0AP3Z15 +BS_Z7Y2466H KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_9B6KWJT2 +BS_Z7Y2466H MYT1L--MYT1L in-frame MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_9B6KWJT2 +BS_Z7Y2466H PEAK1--LINGO1 frameshift PEAK1 NA LINGO1 NA Kinase NA NA NA NA ARRIBA 1 PT_9B6KWJT2 +BS_Z7Y2466H PLCE1--PIPSL/PLCE1 frameshift PLCE1 NA PIPSL PLCE1 TumorSuppressorGene NA NA TumorSuppressorGene NA ARRIBA 1 PT_9B6KWJT2 +BS_Z85M2R3N MFHAS1--PRAG1 frameshift MFHAS1 NA PRAG1 NA Oncogene Kinase NA NA NA ARRIBA 1 PT_QJ3144WH +BS_Z85M2R3N RFX4--RFX4 frameshift RFX4 NA RFX4 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_QJ3144WH +BS_ZA9XT151 BRINP1--BRINP1 frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_WP871F5S +BS_ZA9XT151 MTSS1--MTSS1 frameshift MTSS1 NA MTSS1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_WP871F5S +BS_ZA9XT151 NRXN2--NRXN2 frameshift NRXN2 NA NRXN2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_WP871F5S +BS_ZA9XT151 OPCML--OPCML in-frame OPCML NA OPCML NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_WP871F5S +BS_ZD5HN296 AC084337.2--LMO2/CAPRIN1 frameshift AC084337.2 NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG +BS_ZD5HN296 BRSK2--AL078612.2 other BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA STARFUSION 1 PT_89XRZBSG +BS_ZD5HN296 BRSK2--AL078612.2 frameshift BRSK2 NA AL078612.2 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_ZD5HN296 CD44--AC110058.1 other CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA STARFUSION 1 PT_89XRZBSG +BS_ZD5HN296 CD44--AC110058.1 frameshift CD44 NA AC110058.1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_ZD5HN296 CD44--AC124657.1/AL358944.1 frameshift CD44 NA AC124657.1 AL358944.1 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_ZD5HN296 CD44--WIZP1/MIR8054 frameshift CD44 NA WIZP1 MIR8054 TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_ZD5HN296 CDKN2A--FAM71BP1/AL353753.1 frameshift CDKN2A NA FAM71BP1 AL353753.1 TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_ZD5HN296 EXT1--AP003548.1 other EXT1 NA AP003548.1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA STARFUSION 1 PT_89XRZBSG +BS_ZD5HN296 EXT1--AP003548.1 frameshift EXT1 NA AP003548.1 NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_ZD5HN296 HIPK3--AL078612.1 frameshift HIPK3 NA AL078612.1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_ZD5HN296 HIPK3--RCN1 frameshift HIPK3 NA RCN1 NA Kinase, Kinase NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_ZD5HN296 IPO7--HIPK3 other IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA STARFUSION 1 PT_89XRZBSG +BS_ZD5HN296 IPO7--HIPK3 frameshift IPO7 NA HIPK3 NA NA Kinase, Kinase NA NA NA ARRIBA 1 PT_89XRZBSG +BS_ZD5HN296 LMO2--LINC02546 other LMO2 NA LINC02546 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_ZD5HN296 PPFIBP1--AC006206.2 frameshift PPFIBP1 NA AC006206.2 NA CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_ZD5HN296 ST5--PAMR1 other ST5 NA PAMR1 NA TumorSuppressorGene, Oncogene NA NA NA NA ARRIBA 1 PT_89XRZBSG +BS_ZD5HN296 TIMM10B--LMO2/CAPRIN1 frameshift TIMM10B NA LMO2 CAPRIN1 NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_89XRZBSG +BS_ZF6BSFNF ABR--YWHAE in-frame ABR NA YWHAE NA Oncogene CosmicCensus, Oncogene NA NA TCGAFusion ARRIBA 1 PT_NWYSD53S +BS_ZF6BSFNF DPF3--TLE1 in-frame DPF3 NA TLE1 NA TranscriptionFactor NA NA NA NA ARRIBA 1 PT_NWYSD53S +BS_ZF6BSFNF HNRNPD--LIN54 in-frame HNRNPD NA LIN54 NA Oncogene TranscriptionFactor NA NA NA ARRIBA 1 PT_NWYSD53S +BS_ZF6BSFNF LINC-PINT--EXOC4 other LINC-PINT NA EXOC4 NA TumorSuppressorGene Oncogene NA NA NA ARRIBA 1 PT_NWYSD53S +BS_ZF6BSFNF NBEA--AC023310.4/NBEAP1 frameshift NBEA NA AC023310.4 NBEAP1 CosmicCensus NA NA Oncogene NA ARRIBA 1 PT_NWYSD53S +BS_ZF6BSFNF YPEL2--PRKAR1A in-frame YPEL2 NA PRKAR1A NA NA TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_NWYSD53S +BS_ZH1FBX50 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_7JQ24F35 +BS_ZH1FBX50 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_7JQ24F35 +BS_ZH1FBX50 CYB5R4--CYB5R4 other CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7JQ24F35 +BS_ZH1FBX50 ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7JQ24F35 +BS_ZH1FBX50 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_7JQ24F35 +BS_ZH1FBX50 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_7JQ24F35 +BS_ZH1FBX50 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_7JQ24F35 +BS_ZH1FBX50 LRRK2--LRRK2 frameshift LRRK2 NA LRRK2 NA Kinase, Kinase Kinase, Kinase NA NA NA ARRIBA 1 PT_7JQ24F35 +BS_ZH1FBX50 MCM9--MCM9 in-frame MCM9 NA MCM9 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_7JQ24F35 +BS_ZHHAM3AN ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_J06X17XH +BS_ZHHAM3AN MBNL1--BRAF in-frame MBNL1 NA BRAF NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_J06X17XH +BS_ZJZXDPTP ABR--ANKS1B in-frame ABR NA ANKS1B NA Oncogene NA NA NA NA ARRIBA 1 PT_VREE80NP +BS_ZJZXDPTP AC068446.3/AC068446.1--NBEAP1 other AC068446.3 AC068446.1 NBEAP1 NA NA Oncogene NA NA NA ARRIBA 1 PT_VREE80NP +BS_ZN8136D9 STXBP1--RREB1 frameshift STXBP1 NA RREB1 NA NA Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_AYZA2WCW +BS_ZQKGJD70 CCDC144A--USP32 in-frame CCDC144A NA USP32 NA NA Oncogene NA NA NA ARRIBA 1 PT_VBG3Z18B +BS_ZQKGJD70 HGNC:18790--SRPK2 frameshift HGNC:18790 NA SRPK2 NA NA Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_VBG3Z18B +BS_ZQKGJD70 RNF115--FAM49A other RNF115 NA FAM49A NA NA Oncogene NA NA NA ARRIBA 1 PT_VBG3Z18B +BS_ZR96A4FH AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_E546ZRXA +BS_ZR96A4FH AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_E546ZRXA +BS_ZR96A4FH AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_E546ZRXA +BS_ZR96A4FH BRINP1--BRINP1 frameshift BRINP1 NA BRINP1 NA TumorSuppressorGene TumorSuppressorGene NA NA NA ARRIBA 1 PT_E546ZRXA +BS_ZR96A4FH CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_E546ZRXA +BS_ZR96A4FH CUX2--CUX2 frameshift CUX2 NA CUX2 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_E546ZRXA +BS_ZR96A4FH CYB5R4--CYB5R4 other CYB5R4 NA CYB5R4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_E546ZRXA +BS_ZR96A4FH ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_E546ZRXA +BS_ZR96A4FH FPGT-TNNI3K--FPGT-TNNI3K frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_E546ZRXA +BS_ZR96A4FH KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_E546ZRXA +BS_ZR96A4FH KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_E546ZRXA +BS_ZR96A4FH KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_E546ZRXA +BS_ZR96A4FH MYT1L--MYT1L frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_E546ZRXA +BS_ZR96A4FH POU6F2--POU6F2 frameshift POU6F2 NA POU6F2 NA TumorSuppressorGene, Oncogene, TranscriptionFactor TumorSuppressorGene, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_E546ZRXA +BS_ZR96A4FH PTPRG--PTPRG in-frame PTPRG NA PTPRG NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_E546ZRXA +BS_ZRM0W01M AC004828.1/DPF3--DPF3 other AC004828.1 DPF3 DPF3 NA NA TranscriptionFactor TranscriptionFactor NA NA ARRIBA 1 PT_EYZ25B99 +BS_ZRM0W01M AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_EYZ25B99 +BS_ZRM0W01M CSMD3--CSMD3 in-frame CSMD3 NA CSMD3 NA CosmicCensus, Oncogene CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_EYZ25B99 +BS_ZRM0W01M ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_EYZ25B99 +BS_ZRM0W01M FPGT-TNNI3K--FPGT-TNNI3K frameshift FPGT-TNNI3K NA FPGT-TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_EYZ25B99 +BS_ZRM0W01M FUT8/AL391261.1--FUT8 other FUT8 AL391261.1 FUT8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_EYZ25B99 +BS_ZRM0W01M MYT1L--MYT1L frameshift MYT1L NA MYT1L NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_EYZ25B99 +BS_ZRM0W01M NRG1-IT1--NRG1 other NRG1-IT1 NA NRG1 NA NA CosmicCensus NA NA NA ARRIBA 1 PT_EYZ25B99 +BS_ZRM0W01M PLEKHA8--PLEKHA8 in-frame PLEKHA8 NA PLEKHA8 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_EYZ25B99 +BS_ZRM0W01M PWWP2AP1--SPRY2/RNU6-61P other PWWP2AP1 NA SPRY2 RNU6-61P NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_EYZ25B99 +BS_ZRM0W01M TNNI3K--TNNI3K frameshift TNNI3K NA TNNI3K NA Kinase Kinase NA NA NA ARRIBA 1 PT_EYZ25B99 +BS_ZTWGFWTX KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_TEBD1SES +BS_ZV1P6W9C TRRAP--NRXN3 in-frame TRRAP NA NRXN3 NA Kinase, CosmicCensus, Kinase NA NA NA NA ARRIBA 1 PT_ZVYRFGEN +BS_ZV68CES9 AC068446.3/AC068446.1--NBEAP1 other AC068446.3 AC068446.1 NBEAP1 NA NA Oncogene NA NA NA ARRIBA 1 PT_F0N89D15 +BS_ZV68CES9 CLIP4/ALK--CLIP4 other CLIP4 ALK CLIP4 NA NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA ARRIBA 1 PT_F0N89D15 +BS_ZV68CES9 GNPTAB--MMP2 frameshift GNPTAB NA MMP2 NA NA Oncogene NA NA NA ARRIBA 1 PT_F0N89D15 +BS_ZV68CES9 NBEA--AC023310.4/NBEAP1 frameshift NBEA NA AC023310.4 NBEAP1 CosmicCensus NA NA Oncogene NA ARRIBA 1 PT_F0N89D15 +BS_ZV68CES9 ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_F0N89D15 +BS_ZV9Z3SY6 KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_S3FJSBJT +BS_ZVZDDW2G BCR--FERMT2 in-frame BCR NA FERMT2 NA Kinase, TumorSuppressorGene, CosmicCensus, Oncogene NA NA NA NA ARRIBA 1 PT_E3ADF4ZB +BS_ZVZDDW2G CECR2--RAD51B frameshift CECR2 NA RAD51B NA NA CosmicCensus, Oncogene NA NA NA ARRIBA 1 PT_E3ADF4ZB +BS_ZVZDDW2G MN1--PATZ1 in-frame MN1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_E3ADF4ZB +BS_ZVZDDW2G MN1--PATZ1 frameshift MN1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA ARRIBA 1 PT_E3ADF4ZB +BS_ZVZDDW2G MN1--PATZ1 other MN1 NA PATZ1 NA CosmicCensus, Oncogene CosmicCensus, Oncogene, TranscriptionFactor NA NA NA STARFUSION 1 PT_E3ADF4ZB +BS_ZVZDDW2G NUMB--TRAV7 frameshift NUMB NA TRAV7 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_E3ADF4ZB +BS_ZVZDDW2G PI4KA--MDGA2 frameshift PI4KA NA MDGA2 NA Kinase NA NA NA NA ARRIBA 1 PT_E3ADF4ZB +BS_ZVZDDW2G PRR5--MICAL3 other PRR5 NA MICAL3 NA TumorSuppressorGene NA NA NA NA ARRIBA 1 PT_E3ADF4ZB +BS_ZVZDDW2G RALGAPA1--PI4KA frameshift RALGAPA1 NA PI4KA NA NA Kinase NA NA NA ARRIBA 1 PT_E3ADF4ZB +BS_ZVZDDW2G SPTLC2--YPEL1/MAPK1 frameshift SPTLC2 NA YPEL1 MAPK1 NA NA NA CosmicCensus, Oncogene, Kinase NA ARRIBA 1 PT_E3ADF4ZB +BS_ZXYDSBM9 7SK--RMRP other 7SK NA RMRP NA NA Oncogene NA NA NA STARFUSION 1 PT_R63RHJWX +BS_ZXYDSBM9 AL390726.6--IGFBPL1/AL390726.6 other AL390726.6 NA IGFBPL1 AL390726.6 NA TumorSuppressorGene NA NA NA ARRIBA 1 PT_R63RHJWX +BS_ZXYDSBM9 AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_R63RHJWX +BS_ZXYDSBM9 AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_R63RHJWX +BS_ZXYDSBM9 CHFR--CHFR in-frame CHFR NA CHFR NA TumorSuppressorGene, Oncogene TumorSuppressorGene, Oncogene NA NA NA ARRIBA 1 PT_R63RHJWX +BS_ZXYDSBM9 FAM49A--AC010145.1 frameshift FAM49A NA AC010145.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_R63RHJWX +BS_ZXYDSBM9 FAM49A--MYCNOS frameshift FAM49A NA MYCNOS NA Oncogene NA NA NA NA ARRIBA 1 PT_R63RHJWX +BS_ZXYDSBM9 FAM49A--RN7SL104P/AC010145.1 frameshift FAM49A NA RN7SL104P AC010145.1 Oncogene NA NA NA NA ARRIBA 1 PT_R63RHJWX +BS_ZXYDSBM9 GOPC--FYN frameshift GOPC NA FYN NA CosmicCensus, Oncogene Kinase, Oncogene, Kinase NA NA NA ARRIBA 1 PT_R63RHJWX +BS_ZXYDSBM9 KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_R63RHJWX +BS_ZXYDSBM9 KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_R63RHJWX +BS_ZXYDSBM9 KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_R63RHJWX +BS_ZXYDSBM9 RMRP--AL355075.4 other RMRP NA AL355075.4 NA Oncogene NA NA NA NA STARFUSION 1 PT_R63RHJWX +BS_ZXYDSBM9 ST18--ST18 frameshift ST18 NA ST18 NA TranscriptionFactor TranscriptionFactor NA NA NA ARRIBA 1 PT_R63RHJWX +BS_ZZMYDZJW KIAA1549--BRAF in-frame KIAA1549 NA BRAF NA CosmicCensus, Oncogene Kinase, CosmicCensus, Oncogene, Kinase NA NA TCGAFusion ARRIBA 1 PT_5M8A47WW +BS_ZZPBANDD AL590132.1--KCNH1 frameshift AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_9YNQJZ5G +BS_ZZPBANDD AL590132.1--KCNH1 in-frame AL590132.1 NA KCNH1 NA NA Oncogene NA NA NA ARRIBA 1 PT_9YNQJZ5G +BS_ZZPBANDD CNTN4--CNTN4 in-frame CNTN4 NA CNTN4 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_9YNQJZ5G +BS_ZZPBANDD ERC2--ERC2 in-frame ERC2 NA ERC2 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_9YNQJZ5G +BS_ZZPBANDD KCNH1--AL590132.1 frameshift KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_9YNQJZ5G +BS_ZZPBANDD KCNH1--AL590132.1 in-frame KCNH1 NA AL590132.1 NA Oncogene NA NA NA NA ARRIBA 1 PT_9YNQJZ5G +BS_ZZPBANDD KCNH1--KCNH1 frameshift KCNH1 NA KCNH1 NA Oncogene Oncogene NA NA NA ARRIBA 1 PT_9YNQJZ5G +BS_ZZWMD6FA AC022387.1--DDR2 other AC022387.1 NA DDR2 NA NA Kinase, TumorSuppressorGene, CosmicCensus, Kinase NA NA NA ARRIBA 1 PT_RGX23JFP +BS_ZZWMD6FA ALK--SPDYA frameshift ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA ARRIBA 1 PT_RGX23JFP +BS_ZZWMD6FA ALK--SPDYA other ALK NA SPDYA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA NA STARFUSION 1 PT_RGX23JFP +BS_ZZWMD6FA FAM135B--FAM135B frameshift FAM135B NA FAM135B NA CosmicCensus CosmicCensus NA NA NA ARRIBA 1 PT_RGX23JFP +BS_ZZWMD6FA PPP1CB--ALK in-frame PPP1CB NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA 1 PT_RGX23JFP +BS_ZZWMD6FA PPP1CB--ALK other PPP1CB NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA STARFUSION 1 PT_RGX23JFP +BS_ZZWMD6FA SPDYA--ALK other SPDYA NA ALK NA NA Kinase, CosmicCensus, Oncogene, Kinase NA NA NA ARRIBA, STARFUSION 2 PT_RGX23JFP diff --git a/analyses/fusion_filtering/results/pbta-fusion-recurrent-fusion-bysample.tsv b/analyses/fusion_filtering/results/pbta-fusion-recurrent-fusion-bysample.tsv index 54673867c9..48b1bbda0a 100644 --- a/analyses/fusion_filtering/results/pbta-fusion-recurrent-fusion-bysample.tsv +++ b/analyses/fusion_filtering/results/pbta-fusion-recurrent-fusion-bysample.tsv @@ -167,7 +167,6 @@ BS_5CTVXVRX 0 0 0 1 0 BS_5JM573JC 0 0 0 1 0 BS_5K3R0F5D 0 0 0 1 0 BS_5NWDARXG 0 0 0 1 0 -BS_5P1TN10Z 0 0 0 1 0 BS_5P3CZQV8 0 0 0 1 0 BS_5PEFNDCY 0 0 1 0 0 BS_5PJCHF6V 0 0 0 1 0 @@ -201,7 +200,6 @@ BS_6NTXGQAC 0 0 0 1 0 BS_6R7SFVV2 0 0 0 1 0 BS_6T4JGBGY 0 0 0 1 0 BS_6VF6VPCG 0 0 0 1 0 -BS_6VPKXXMR 0 0 0 1 0 BS_6WP1FHTE 0 0 0 1 0 BS_6YMJ621P 0 0 0 1 0 BS_70FFPA51 0 0 0 1 0 @@ -234,7 +232,6 @@ BS_850BAHH9 0 0 0 1 0 BS_86Q14TZG 0 0 0 1 0 BS_8D0NYM46 0 0 0 1 0 BS_8F9BDWY4 0 0 0 1 0 -BS_8GW1TMV2 0 0 0 1 0 BS_8J09S6MZ 0 0 0 1 0 BS_8J3B6ZB6 0 0 1 0 0 BS_8NY9J9NQ 0 0 0 1 0 @@ -558,6 +555,7 @@ BS_M4923M40 0 0 0 1 0 BS_M4NVX721 0 0 0 1 0 BS_M4TTKPNR 0 0 1 0 0 BS_M84H3KXA 0 0 0 1 0 +BS_M85CXHDV 0 0 0 1 0 BS_M86ECPHK 0 0 0 1 0 BS_M8M56Z4Y 0 0 1 0 0 BS_M8WP5T16 0 0 0 1 0 @@ -649,7 +647,6 @@ BS_QB7YGKN1 0 0 0 1 0 BS_QB84TBA3 0 0 0 1 0 BS_QBR4WCQ2 0 0 0 1 0 BS_QC3XCE6X 0 0 0 1 0 -BS_QEYPFYHD 0 0 0 1 0 BS_QF5VVZX5 0 0 0 1 0 BS_QH82PBMB 0 0 1 0 0 BS_QKT3TJVK 0 0 0 1 0 @@ -685,6 +682,7 @@ BS_RGSMX7QD 0 0 1 0 0 BS_RHD7XPNP 0 0 0 1 0 BS_RR12T74P 0 0 0 1 0 BS_RRAEQZ97 0 0 0 1 0 +BS_RSRPX3S8 0 0 0 1 0 BS_RVSEDNJ4 0 0 1 0 0 BS_RWJZFTP9 0 0 1 0 0 BS_RX1YTZ7F 0 0 0 0 1 @@ -741,6 +739,7 @@ BS_TMTV769C 0 0 0 1 0 BS_TNRHHYNC 0 0 0 1 0 BS_TQ5QHR17 0 0 0 1 0 BS_TRKH2SPE 0 0 0 1 0 +BS_TV5B86ZD 0 0 0 1 0 BS_TW8DQH8J 0 0 0 1 0 BS_TXY8QYWA 0 0 0 1 0 BS_TXZ7KHTQ 0 0 0 1 0 @@ -869,6 +868,7 @@ BS_Z6BWR941 0 0 1 0 0 BS_Z6MC4N8D 0 0 0 1 0 BS_Z72QAZC7 0 0 0 1 0 BS_Z7G68ZS2 0 0 0 1 0 +BS_Z7PKVY9J 0 0 0 1 0 BS_Z7Y2466H 0 0 1 0 0 BS_Z85M2R3N 0 0 0 1 0 BS_Z8F3GM85 0 0 0 1 0 diff --git a/analyses/fusion_filtering/results/pbta-fusion-recurrently-fused-genes-byhistology.tsv b/analyses/fusion_filtering/results/pbta-fusion-recurrently-fused-genes-byhistology.tsv index 822edeb2a4..81b9781b72 100644 --- a/analyses/fusion_filtering/results/pbta-fusion-recurrently-fused-genes-byhistology.tsv +++ b/analyses/fusion_filtering/results/pbta-fusion-recurrently-fused-genes-byhistology.tsv @@ -1,7 +1,7 @@ Gene broad_histology count BRAF Low-grade astrocytic tumor 115 KIAA1549 Low-grade astrocytic tumor 109 -C11orf95 Ependymal tumor 27 +C11orf95 Ependymal tumor 28 RELA Ependymal tumor 25 BRAF Neuronal and mixed neuronal-glial tumor 8 MET Diffuse astrocytic and oligodendroglial tumor 7 diff --git a/analyses/fusion_filtering/results/pbta-fusion-recurrently-fused-genes-bysample.tsv b/analyses/fusion_filtering/results/pbta-fusion-recurrently-fused-genes-bysample.tsv index 34b25029ca..504a52b300 100644 --- a/analyses/fusion_filtering/results/pbta-fusion-recurrently-fused-genes-bysample.tsv +++ b/analyses/fusion_filtering/results/pbta-fusion-recurrently-fused-genes-bysample.tsv @@ -167,7 +167,6 @@ BS_5CTVXVRX 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_5JM573JC 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_5K3R0F5D 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_5NWDARXG 0 0 0 0 0 0 0 1 0 0 0 0 0 -BS_5P1TN10Z 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_5P3CZQV8 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_5PEFNDCY 1 0 0 0 0 1 0 0 0 0 0 0 0 BS_5PJCHF6V 0 0 0 0 0 0 0 1 0 0 0 0 0 @@ -201,7 +200,6 @@ BS_6NTXGQAC 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_6R7SFVV2 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_6T4JGBGY 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_6VF6VPCG 0 0 0 0 0 0 0 1 0 0 0 0 0 -BS_6VPKXXMR 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_6WP1FHTE 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_6YMJ621P 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_70FFPA51 0 0 0 0 0 0 0 1 0 0 0 0 0 @@ -234,7 +232,6 @@ BS_850BAHH9 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_86Q14TZG 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_8D0NYM46 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_8F9BDWY4 0 0 0 0 0 0 0 1 0 0 0 0 0 -BS_8GW1TMV2 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_8J09S6MZ 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_8J3B6ZB6 1 0 0 0 0 1 0 0 0 0 0 0 0 BS_8NY9J9NQ 0 0 0 0 0 0 0 1 0 0 0 0 0 @@ -558,6 +555,7 @@ BS_M4923M40 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_M4NVX721 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_M4TTKPNR 1 0 0 0 0 1 0 0 0 0 0 0 0 BS_M84H3KXA 0 0 0 0 0 0 0 1 0 0 0 0 0 +BS_M85CXHDV 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_M86ECPHK 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_M8M56Z4Y 1 0 0 0 0 1 0 0 0 0 0 0 0 BS_M8WP5T16 0 0 0 0 0 0 0 1 0 0 0 0 0 @@ -649,7 +647,6 @@ BS_QB7YGKN1 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_QB84TBA3 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_QBR4WCQ2 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_QC3XCE6X 0 0 0 0 0 0 0 1 0 0 0 0 0 -BS_QEYPFYHD 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_QF5VVZX5 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_QH82PBMB 1 0 0 0 0 1 0 0 0 0 0 0 0 BS_QKT3TJVK 0 0 0 0 0 0 0 1 0 0 0 0 0 @@ -685,6 +682,7 @@ BS_RGSMX7QD 1 0 0 0 0 1 0 0 0 0 0 0 0 BS_RHD7XPNP 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_RR12T74P 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_RRAEQZ97 0 0 0 0 0 0 0 1 0 0 0 0 0 +BS_RSRPX3S8 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_RVSEDNJ4 1 0 0 0 0 1 0 0 0 0 0 0 0 BS_RWJZFTP9 1 0 0 0 0 1 0 0 0 0 0 0 0 BS_RX1YTZ7F 0 0 0 0 1 0 0 0 0 0 0 1 0 @@ -741,12 +739,13 @@ BS_TMTV769C 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_TNRHHYNC 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_TQ5QHR17 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_TRKH2SPE 0 0 0 0 0 0 0 1 0 0 0 0 0 +BS_TV5B86ZD 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_TW8DQH8J 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_TXY8QYWA 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_TXZ7KHTQ 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_TYAYZ9ZW 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_TYKJ8G2G 0 0 0 0 0 0 0 1 0 0 0 0 0 -BS_TZ5D0A7R 0 0 0 0 0 0 0 1 0 0 0 0 0 +BS_TZ5D0A7R 0 1 0 0 0 0 0 0 0 0 0 0 0 BS_TZVFR600 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_V0Q1G94N 1 0 0 0 0 1 0 0 0 0 0 0 0 BS_V3REENH9 1 0 0 0 0 1 0 0 0 0 0 0 0 @@ -869,6 +868,7 @@ BS_Z6BWR941 1 0 0 0 0 1 0 0 0 0 0 0 0 BS_Z6MC4N8D 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_Z72QAZC7 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_Z7G68ZS2 0 0 0 0 0 0 0 1 0 0 0 0 0 +BS_Z7PKVY9J 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_Z7Y2466H 1 0 0 0 0 1 0 0 0 0 0 0 0 BS_Z85M2R3N 0 0 0 0 0 0 0 1 0 0 0 0 0 BS_Z8F3GM85 0 0 0 0 0 0 0 1 0 0 0 0 0 diff --git a/analyses/fusion_filtering/run_fusion_merged.sh b/analyses/fusion_filtering/run_fusion_merged.sh index a6d1780baa..6351431a0f 100755 --- a/analyses/fusion_filtering/run_fusion_merged.sh +++ b/analyses/fusion_filtering/run_fusion_merged.sh @@ -26,7 +26,8 @@ references_directory="analyses/fusion_filtering/references/" normal_expression_file="$references_directory/Brain_FPKM_hg38_matrix.txt.zip" # data release files to use for recurrent fusion/fused genes detection -putative_oncogenic_fusion="data/pbta-fusion-putative-oncogenic.tsv" +# TODO: once the data release gets updated to v15+, use the putative oncogenic fusion file included in the data download +putative_oncogenic_fusion="analyses/fusion_filtering/results/pbta-fusion-putative-oncogenic.tsv" histologies_file="data/pbta-histologies.tsv" independent_samples_file="data/independent-specimens.wgswxs.primary-plus.tsv" @@ -51,7 +52,7 @@ Rscript analyses/fusion_filtering/02-fusion-filtering.R --standardFusionFiles $s --outputfile scratch/standardFusionPolyaExp \ --readthroughFilter # Run Fusion general filtering for stranded -Rscript analyses/fusion_filtering/02-fusion-filtering.R --standardFusionFiles $standard_arriba_file,$stranded_starfusion_file \ +Rscript analyses/fusion_filtering/02-fusion-filtering.R --standardFusionFiles $standard_arriba_file,$standard_starfusion_file \ --expressionMatrix $stranded_expression_file \ --artifactFilter $artifact_filter \ --readingFrameFilter $reading_frame_filter \