adding annoFuse for kinase status (#816)

* adding annoFuse for kinase status * Update Dockerfile * Update Dockerfile * Update Dockerfile * Update Dockerfile * Update Dockerfile * Update Dockerfile * Update Dockerfile * Update Dockerfile * Update Dockerfile
AlexsLemonade · Oct 20, 2020 · 227db05 · 227db05
1 parent 520133a
commit 227db05
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -332,6 +332,13 @@ RUN R -e "remotes::install_github('stan-dev/rstantools', ref = 'd43bf9fb6120d40a
 # Build arguments are according to the sigfit instructions
 RUN R -e "remotes::install_github('kgori/sigfit', ref = '209776ee1d2193ad4b682b2e2472f848bd7c67a6', build_vignettes = TRUE, build_opts = c('--no-resave-data', '--no-manual'), dependencies = TRUE)"
 
+# Package for kinase domain retention for fusions
+RUN ./install_bioc.r \
+     EnsDb.Hsapiens.v86 \
+     ensembldb
+
+RUN R -e "remotes::install_github('d3b-center/annoFuse',ref = 'c6a2111b5949ca2aae3853f7f34de3d0db4ffa33', dependencies = TRUE)"
+
 
 #### Please install your dependencies immediately above this comment.
 #### Add a comment to indicate what analysis it is required for