From a59f1b34c59e0ee1a226f926306156803a3ef66a Mon Sep 17 00:00:00 2001 From: uncircLe <50541954+uncircle@users.noreply.github.com> Date: Wed, 3 Jul 2024 17:53:04 +0300 Subject: [PATCH] add introduction for data, use GN to augment data and test with baseline --- tutorials/EEG_test.ipynb | 849 +++++++++++++++++++++++++++++++++++++-- 1 file changed, 812 insertions(+), 37 deletions(-) diff --git a/tutorials/EEG_test.ipynb b/tutorials/EEG_test.ipynb index c3fb0e2..ca290af 100644 --- a/tutorials/EEG_test.ipynb +++ b/tutorials/EEG_test.ipynb @@ -1,12 +1,54 @@ { "cells": [ + { + "metadata": {}, + "cell_type": "markdown", + "source": [ + "# 0. Introduction\n", + "\n", + "data: synchronized_brainwave_dataset.csv\n", + "\n", + "row of data:\n", + "\n", + "\\#: the index of eath row\n", + "\n", + "id: participant_id, integer value in the range of 1 to 30, means 30 participants.\n", + "\n", + "\n", + "indra_time: time of all stimulus events\n", + "\n", + "browser_latency\n", + "\n", + "reading_time\n", + "\n", + "attention_esense: The Attention Meter algorithm indicates the intensity of mental “focus” or “attention.” The value ranges from 0 to 100. The attention level increases when a user focuses on a single thought or an external object, and decreases when distracted.(https://neurosky.com/biosensors/eeg-sensor/algorithms/)\n", + "\n", + "meditation_esense: The Meditation Meter algorithm indicates the level of mental “calmness” or “relaxation.” The value ranges from 0 to 100, and increases when users relax the mind and decreases when they are uneasy or stressed.(https://neurosky.com/biosensors/eeg-sensor/algorithms/)\n", + "\n", + "eeg_power: Tuple represents the magnitude of 8 commonly-recognized types of EEG frequency bands -- delta (0.5 - 2.75Hz), theta (3.5 - 6.75Hz), low-alpha (7.5 - 9.25Hz), high-alpha (10 - 11.75Hz), low-beta (13 - 16.75Hz), high-beta (18 - 29.75Hz), low-gamma (31 - 39.75Hz), and mid-gamma (41 - 49.75Hz). These values have no units and are only meaningful for comparison to the values for the other frequency bands within a sample.(https://courses.ischool.berkeley.edu/i290-shda/f14/ColorCountingChallenge/)\n", + "\n", + "raw_values: Tuple containing raw sample values acquired by the sensor\n", + "\n", + "signal_quality: A signal quality of 0 is optimal. Values over 128 indicate that the headset was placed incorrectly.\n", + "\n", + "createdAt: when data were created\n", + "\n", + "updatedAt: when data were updated\n", + "\n", + "label: Indicate what the participant is doing.\n", + "\n", + "The device only has one electrode and it is placed roughly at fp1, according to the dataset creator.(https://www.kaggle.com/datasets/berkeley-biosense/synchronized-brainwave-dataset/discussion/284896)\n" + ], + "id": "8eabc8e8f0eef50e" + }, { "cell_type": "markdown", "id": "f4666ce8cbcbde16", "metadata": {}, "source": [ "# 1. Baseline\n", - "classify for math and relax in synchronized_brainwave_dataset data" + "\n", + "In this baseline, we want to classify labels math and relax using column raw_data. We have 934 rows of data for relax and 936 rows for math. Each row has a raw_data column which is a 512 length list, this 512 length list acts as feature in our model.\n" ] }, { @@ -75,23 +117,23 @@ "id": "a380d2f85b0a7235", "metadata": { "ExecuteTime": { - "end_time": "2024-06-29T15:09:17.235969Z", - "start_time": "2024-06-29T15:09:16.506146Z" + "end_time": "2024-07-03T13:40:36.472122Z", + "start_time": "2024-07-03T13:40:35.382006Z" } }, "source": [ "df = pd.read_csv(\"../data/synchronized_brainwave_dataset.csv\")" ], "outputs": [], - "execution_count": 3 + "execution_count": 81 }, { "cell_type": "code", "id": "c4a62977f983c13e", "metadata": { "ExecuteTime": { - "end_time": "2024-06-29T15:09:17.253091Z", - "start_time": "2024-06-29T15:09:17.237400Z" + "end_time": "2024-07-03T13:40:38.819162Z", + "start_time": "2024-07-03T13:40:38.795639Z" } }, "source": [ @@ -123,45 +165,363 @@ ] } ], - "execution_count": 4 + "execution_count": 82 + }, + { + "metadata": { + "ExecuteTime": { + "end_time": "2024-07-03T13:42:58.496323Z", + "start_time": "2024-07-03T13:42:58.487262Z" + } + }, + "cell_type": "code", + "source": "# relax", + "id": "e1faafa95d9313d", + "outputs": [ + { + "data": { + "text/plain": [ + " Unnamed: 0 id indra_time browser_latency \\\n", + "13274 26880 7 2015-05-09 23:32:53.910 14 \n", + "13275 2427 11 2015-05-09 23:32:53.915 -171 \n", + "13276 24351 5 2015-05-09 23:32:54.072 1022 \n", + "13277 537 1 2015-05-09 23:32:54.153 13404 \n", + "13278 4859 13 2015-05-09 23:32:54.303 -297 \n", + "... ... .. ... ... \n", + "23263 20366 29 2015-05-09 23:44:21.136 954517 \n", + "23264 15358 23 2015-05-09 23:44:21.148 1534 \n", + "23265 15906 24 2015-05-09 23:44:21.171 -1,572 \n", + "23266 22345 30 2015-05-09 23:44:21.273 759 \n", + "23267 17775 26 2015-05-09 23:44:21.306 -1,168 \n", + "\n", + " reading_time attention_esense meditation_esense \\\n", + "13274 2015-05-09 16:32:54.000 80 61 \n", + "13275 2015-05-09 16:32:54.135 56 40 \n", + "13276 2015-05-09 16:32:53.057 13 48 \n", + "13277 2015-05-09 16:32:40.884 51 67 \n", + "13278 2015-05-09 16:32:54.779 60 66 \n", + "... ... ... ... \n", + "23263 2015-05-09 17:00:15.599 38 91 \n", + "23264 2015-05-09 16:44:19.717 56 87 \n", + "23265 2015-05-09 16:44:22.830 100 70 \n", + "23266 2015-05-09 16:44:20.605 48 81 \n", + "23267 2015-05-09 16:44:23.123 64 64 \n", + "\n", + " eeg_power \\\n", + "13274 [5044.0, 10156.0, 3281.0, 10403.0, 12393.0, 10266.0, 1949.0, 2937.0] \n", + "13275 [548188.0, 67192.0, 20298.0, 4142.0, 30576.0, 18237.0, 5603.0, 4783.0] \n", + "13276 [449571.0, 83093.0, 15379.0, 34656.0, 6750.0, 10348.0, 5315.0, 2585.0] \n", + "13277 [85497.0, 20547.0, 2723.0, 3270.0, 2522.0, 2209.0, 449.0, 393.0] \n", + "13278 [72768.0, 44080.0, 25974.0, 16079.0, 12995.0, 27132.0, 33264.0, 9121.0] \n", + "... ... \n", + "23263 [69315.0, 29092.0, 17868.0, 85907.0, 13333.0, 24188.0, 7027.0, 4696.0] \n", + "23264 [22375.0, 17940.0, 27965.0, 2261.0, 6953.0, 7502.0, 8088.0, 10833.0] \n", + "23265 [19774.0, 12690.0, 6436.0, 16572.0, 6092.0, 7105.0, 5188.0, 7603.0] 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